Citrus Sinensis ID: 018384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKHV
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHccccccccccccccccEEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEccccccccccccEEEccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccHHHHHHHHHHHHHHcccccccccccEEEEEEccEEEEEEccHHHcccEcHHHHHHHHHHHHHHHHcccccEEEEEccccEEEccEcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccEEEccccEEEEcccEEEEEccEEEcccHHHEccccccccHHHccccccccEEEEEEccccccHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHccEEEEEEcccc
Coil and Loop (DISEMBL)
MQRLKISNISRYFNDLRALSqhrtsssvtddlCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAwendpnigfvsmkgsgrafcaggdiVSLYHFMNQGKLEECKDFFRTLYSFIYLLGthlkphvailngvtmgggagvsipgtfrvacgktvfatpetligfhpdagasfylshlpghLGEFLALTGAKLNGAEMMACGLAThysvseklPLIEEELgklvtddpsVIEACLEKYsdlvypdknsvihridivdkcfglDTVEEIIDSLESeaslindpwcgsTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRlisgdfyevsnfqilnkhv
Flexible Loop (DISEMBL)
mqrlkisnISRYFNDLRALSQhrtsssvtddlCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKvslrsiregrfqtfdeclvREYRMSLQGVSRlisgdfyevsnfqilnkhv
Low Complexity Region (SEG)
MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKHV
Disordered region (IsUnstruct)
**********RYFNDL************TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL****
Disordered Region (DISOPRED)
************************************LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEK*************HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKHV
Disordered Region (DISEMBL)
MQRLKISNISRYFNDLRALS*********DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKHV
Disordered Region (DISPRO)
*QRLKISNISRYFNDLRALSQHR**********NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q5XF59	401	3-hydroxyisobutyryl-CoA h	yes	no	0.918	0.817	0.692	1e-126
Q8RXN4	409	3-hydroxyisobutyryl-CoA h	no	no	0.994	0.867	0.580	1e-123
Q6NMB0	378	Probable 3-hydroxyisobuty	no	no	0.901	0.851	0.490	2e-87
Q9LKJ1	378	3-hydroxyisobutyryl-CoA h	no	no	0.876	0.828	0.485	4e-85
Q1PEY5	378	Probable 3-hydroxyisobuty	no	no	0.901	0.851	0.472	4e-82
Q9SHJ8	387	3-hydroxyisobutyryl-CoA h	no	no	0.865	0.798	0.421	3e-70
Q6NVY1	386	3-hydroxyisobutyryl-CoA h	yes	no	0.887	0.821	0.398	2e-57
Q8QZS1	385	3-hydroxyisobutyryl-CoA h	yes	no	0.876	0.812	0.379	1e-56
Q5XIE6	385	3-hydroxyisobutyryl-CoA h	yes	no	0.885	0.820	0.382	7e-56
Q5ZJ60	385	3-hydroxyisobutyryl-CoA h	yes	no	0.910	0.844	0.369	2e-55

>sp|Q5XF59|HIBC4_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/328 (69%), Positives = 272/328 (82%)

Query: 28  VTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS 87
            ++DL  QVLVEG   SR AILNRP ALNAL T+MG +L KL+K WE DPNIGFV MKGS
Sbjct: 31  TSEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGS 90

Query: 88  GRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 147
           GRAFCAGGDIVSLYH   +G  +  ++FF +LYSFIYLLGT+LKPHVAILNGVTMGGG G
Sbjct: 91  GRAFCAGGDIVSLYHLRTRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTG 150

Query: 148 VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMA 207
           VSIPGTFRVA  +T+FATPET+IGFHPDAGASF LSHLPG LGE+L LTG KL+GAEM+A
Sbjct: 151 VSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLA 210

Query: 208 CGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 267
           CGLATHY  SE++P++EE+L KL+TDDPSV+E+CLEK +++ +P+K  VI RID+++KCF
Sbjct: 211 CGLATHYIRSEEVPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCF 270

Query: 268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVR 327
             DTVEEIIDSLE EAS   D WC +TLR LKE+SPLSLKV+LRSIREGR QT D+CL+R
Sbjct: 271 SHDTVEEIIDSLEIEASRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIR 330

Query: 328 EYRMSLQGVSRLISGDFYEVSNFQILNK 355
           EYRMSLQG+   +SG+F E    ++++K
Sbjct: 331 EYRMSLQGLIGPMSGNFCEGVRARLIDK 358

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1

 Score =  440 bits (1132), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/362 (58%), Positives = 280/362 (77%), Gaps = 7/362 (1%)

Query: 1   MQRLK-ISNISRYFNDLRALSQHRTSSSVTD------DLCNQVLVEGKANSRMAILNRPS 53
           MQ +K +  +S     +R++S  R  S++ +      D  +QVLVEGKA SR AILN PS
Sbjct: 1   MQTVKALRRVSEPLQWVRSVSYGRRFSALPNYSASDADFEDQVLVEGKAKSRAAILNNPS 60

Query: 54  ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113
           +LNAL+  M  +L +L+++WE +P I FV MKGSG+ FC+G D++SLYH +N+G  EE K
Sbjct: 61  SLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEESK 120

Query: 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH 173
            FF  LY F+YL GT+LKP++AI++GVTMG G G+S+PG FRVA  KTV A PE  IGFH
Sbjct: 121 LFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGFH 180

Query: 174 PDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD 233
           PDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE +GKL+TD
Sbjct: 181 PDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERIGKLLTD 240

Query: 234 DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGS 293
           DP+VIE  L +Y DLVYPD +SV+H+I+++DK FGLDTVEEII+++E+EA+   + WC  
Sbjct: 241 DPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGLDTVEEIIEAMENEAANSCNEWCKK 300

Query: 294 TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL 353
           TL+ +KEASPLSLK++L+SIREGRFQT D+CL  EYR+S+ GVS+++SGDF E    +++
Sbjct: 301 TLKQIKEASPLSLKITLQSIREGRFQTLDQCLTHEYRISICGVSKVVSGDFCEGIRARLV 360

Query: 354 NK 355
           +K
Sbjct: 361 DK 362

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NMB0|HIBC3_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1

 Score =  322 bits (826), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/322 (49%), Positives = 216/322 (67%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           +QVLVE K++ R+  LNRP  LNAL  NM ++L +LF+A+E DP++  V +KG GRAFCA
Sbjct: 5   SQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCA 64

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGD+  +   M QGK     DFFR  Y+  Y++ T+ KP V+ILNG+ MG GAGVSI G 
Sbjct: 65  GGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGR 124

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAE++ACGLATH
Sbjct: 125 FRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATH 184

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           +  S +L  +E +L K+ + DPS +   L+ Y+   +  + S  HR+D++D+CF   T+E
Sbjct: 185 FVPSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTME 244

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EII +LE E +   D W  +T+R LK++SP SLK+SLRSIREGR Q    CL REYRM  
Sbjct: 245 EIISALERETTQELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYRMVC 304

Query: 334 QGVSRLISGDFYEVSNFQILNK 355
             +   +S D  E     +++K
Sbjct: 305 HVMKGDLSKDLVEGCRAILIDK 326

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1

 Score =  315 bits (806), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 152/313 (48%), Positives = 213/313 (68%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           +QVLVE K++ R+  LNRP  LNAL+ +M ++L +LF A+E DP++  V +KG GRAFCA
Sbjct: 9   SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGD+ ++   +NQG      ++F + Y   Y++ T+ K  V+ILNG+ MGGGAGVS+ G 
Sbjct: 69  GGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           +  S +L  +E +L ++ ++DP+     L+ Y+      + S   R+D++D+CF   TVE
Sbjct: 189 FVPSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVE 248

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EII +LE EA+   D W  +T++ LK+ SP SLK+SLRSIREGR Q   +CL+REYRM  
Sbjct: 249 EIISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMVC 308

Query: 334 QGVSRLISGDFYE 346
             +   IS DF E
Sbjct: 309 HVMKGEISKDFVE 321

Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q1PEY5|HIBC2_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 2 OS=Arabidopsis thaliana GN=At2g30650 PE=2 SV=1

 Score =  305 bits (780), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 152/322 (47%), Positives = 216/322 (67%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           +QVLVE K++ R+   NRP  LNAL+ +M ++L +LF A+E DP++  V +KG GRAF A
Sbjct: 5   SQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSA 64

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGDI  +   + QGKL     +F+  Y+  Y+L T+ KP V+ILNG+ MGGGAG+S  G 
Sbjct: 65  GGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGR 124

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 125 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 184

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           +  S  L  +E EL K+ + + + I   L+ Y++  + +++S  HR+D++D+CF   TVE
Sbjct: 185 FVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVE 244

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EI  +LE E +   + W  +T++ L++ASP  LK+SLRSIREGR Q   +CL+REYRM  
Sbjct: 245 EIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVC 304

Query: 334 QGVSRLISGDFYEVSNFQILNK 355
             +   IS DF E     +++K
Sbjct: 305 HVMKGDISKDFVEGCRAVLIDK 326

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9SHJ8|HIBC8_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 OS=Arabidopsis thaliana GN=At1g06550 PE=2 SV=2

 Score =  265 bits (677), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/311 (42%), Positives = 198/311 (63%), Gaps = 2/311 (0%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V+ E K + R+  LNRP  LN ++  +  KL +  + WE D     + +KG+GRAF AGG
Sbjct: 13  VIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGG 72

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+   YH   Q   + C +    +Y   Y + T+ K  V+++NG++MGGGA + +P  F 
Sbjct: 73  DLKVFYH--GQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFS 130

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
           V   KTVFATPE   GFH D G S+  S LPGHLGEFLALTGA+LNG E++A G+ATH+ 
Sbjct: 131 VVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGMATHFV 190

Query: 216 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275
            S KL  +E  L  L + D  V+++ +E++S+ V  DK+S++++  ++++CF  ++V++I
Sbjct: 191 PSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKESVKQI 250

Query: 276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG 335
           I + E+EAS   + W    ++ LK +SP  LK+ L+SIREGR QT  +CL +E+R++L  
Sbjct: 251 IQAFEAEASKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFRLTLNI 310

Query: 336 VSRLISGDFYE 346
           + + IS D YE
Sbjct: 311 LRKTISPDMYE 321

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NVY1|HIBCH_HUMAN 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/329 (39%), Positives = 189/329 (57%), Gaps = 12/329 (3%)

Query: 22  HRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF 81
           H    S   D   +VL+E K  + +  LNRP  LNAL  NM  ++    K WE DP    
Sbjct: 24  HHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFL 83

Query: 82  VSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 140
           + +KG+G +AFCAGGDI  +     + K +    FFR  Y     +G+  KP+VA+++G+
Sbjct: 84  IIIKGAGGKAFCAGGDIRVISE-AEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGI 142

Query: 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL 200
           TMGGG G+S+ G FRVA  K +FA PET IG  PD G  ++L  L G LG FLALTG +L
Sbjct: 143 TMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRL 202

Query: 201 NGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SDLVYPDKNSVIH 258
            G ++   G+ATH+  SEKL ++EE+L  L +     I + LE Y     +  DK+ ++ 
Sbjct: 203 KGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILE 262

Query: 259 R-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGR 317
             +D ++ CF  +TVEEII++L+ + S     +    L+++ + SP SLK++LR + EG 
Sbjct: 263 EHMDKINSCFSANTVEEIIENLQQDGS----SFALEQLKVINKMSPTSLKITLRQLMEGS 318

Query: 318 FQTFDECLVREYRMSLQGVSRLISGDFYE 346
            +T  E L  EYR+S Q   R    DF+E
Sbjct: 319 SKTLQEVLTMEYRLS-QACMR--GHDFHE 344

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q8QZS1|HIBCH_MOUSE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1

 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/324 (37%), Positives = 187/324 (57%), Gaps = 11/324 (3%)

Query: 13  FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
           F     + QH   S  T+    +VL+E +    +  LNRP  LNAL+ NM  ++    K 
Sbjct: 16  FRRASVILQHLRMSMHTE--AAEVLLERRGCGGVITLNRPKFLNALSLNMIRQIYPQLKT 73

Query: 73  WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 131
           WE DP+   + +KG+G +AFCAGGDI +L     + +    +D FR  Y     + +  K
Sbjct: 74  WEQDPDTFLIIIKGAGGKAFCAGGDIKALSE-AKKARQNLTQDLFREEYILNNAIASCQK 132

Query: 132 PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 191
           P+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  L G LG 
Sbjct: 133 PYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGY 192

Query: 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYP 251
           FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE Y      
Sbjct: 193 FLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKM 252

Query: 252 DKNSVI---HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKV 308
           D++  I     +D ++ CF  +TVE+II++L  + S    P+    ++++ + SP SLK+
Sbjct: 253 DQDKSIIFEEHMDKINSCFSANTVEQIIENLRQDGS----PFAIEQMKVINKMSPTSLKI 308

Query: 309 SLRSIREGRFQTFDECLVREYRMS 332
           +LR + EG  +T  E L+ EYR++
Sbjct: 309 TLRQLMEGSSKTLQEVLIMEYRIT 332

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5XIE6|HIBCH_RAT 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2

 Score =  218 bits (554), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 193/329 (58%), Gaps = 13/329 (3%)

Query: 10  SRYFNDLRA--LSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
           SR+ +  RA  + QH   S  T+    +VL+E +  + +  LNRP  LNAL+ NM  ++ 
Sbjct: 11  SRFSSIRRASVILQHLRMSKHTE--TAEVLLERRGCAGVITLNRPKLLNALSLNMIRQIY 68

Query: 68  KLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL 126
              K WE DP+   + +KG+G +AFCAGGDI +L      G+    +D FR  Y     +
Sbjct: 69  PQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQ-TLSQDLFREEYILNNAI 127

Query: 127 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186
            +  KP+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  L 
Sbjct: 128 ASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ 187

Query: 187 GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY- 245
           G LG FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE Y 
Sbjct: 188 GKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYH 247

Query: 246 -SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASP 303
               +  DK+ +    +D ++ CF  +TVE+I+++L  + S    P+    ++++ + SP
Sbjct: 248 AKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLRQDGS----PFAMEQIKVINKMSP 303

Query: 304 LSLKVSLRSIREGRFQTFDECLVREYRMS 332
            SLK++LR + EG  +T  E L  EYR++
Sbjct: 304 TSLKITLRQLMEGSTKTLQEVLTMEYRLT 332

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 188/338 (55%), Gaps = 13/338 (3%)

Query: 13  FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
           FN L+ + QH  +   TD   + VL++ +  + +  LNRP  LNAL+  M  ++    KA
Sbjct: 15  FNRLQVILQHLKTCKHTDSAAD-VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKA 73

Query: 73  WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 131
           WE DP    + +KG+G +AFCAGGD+ ++      G     +D+FR  Y     +GT  K
Sbjct: 74  WEQDPETFLIIIKGTGEKAFCAGGDVRAIADAGKAGD-TMTRDYFREEYRLDNAIGTCKK 132

Query: 132 PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 191
           P+VA+++G+TMGGG G+S+ G FRVA  KTVFA PET IG  PD G  ++L  L G +G 
Sbjct: 133 PYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGH 192

Query: 192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYP 251
            LALTG +L G +++  G+ATH+  S KLP +E++L  L +     I   L  Y      
Sbjct: 193 LLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKI 252

Query: 252 DKNS---VIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKV 308
           D+     +   ++ ++  F  +++EEI+  L+ + S    P+    L  + + SP SLK+
Sbjct: 253 DQEKEFVLDEHMERINSIFSANSMEEIVQKLKQDGS----PFATKQLEAINKMSPTSLKL 308

Query: 309 SLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 346
           +LR +REG   +  +    EYR+S Q   R    DFYE
Sbjct: 309 TLRQLREGATMSLQDVFTMEYRLS-QACMR--GHDFYE 343

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
255541138	415	catalytic, putative [Ricinus communis] g	0.929	0.8	0.753	1e-148
224136292	415	predicted protein [Populus trichocarpa]	0.941	0.809	0.749	1e-140
356504605	407	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.901	0.791	0.726	1e-140
357512815	401	3-hydroxyisobutyryl-CoA hydrolase-like p	0.949	0.845	0.678	1e-138
225453474	405	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.988	0.871	0.658	1e-134
449442604	406	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.994	0.874	0.664	1e-133
225430480	407	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.943	0.828	0.646	1e-130
326507476	424	predicted protein [Hordeum vulgare subsp	0.952	0.801	0.646	1e-128
242035143	406	hypothetical protein SORBIDRAFT_01g02960	0.901	0.793	0.673	1e-128
223973415	406	unknown [Zea mays] gi|414867666|tpg|DAA4	0.952	0.837	0.647	1e-128

>gi|255541138|ref|XP_002511633.1| catalytic, putative [Ricinus communis] gi|223548813|gb|EEF50302.1| catalytic, putative [Ricinus communis]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 250/332 (75%), Positives = 294/332 (88%)

Query: 24  TSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVS 83
           ++S+  DDL  QVLVE KA SR AILNRPSALNALNTNMGA+L KL+K+WE +P++GFV 
Sbjct: 37  SNSTDDDDLDKQVLVESKAYSRTAILNRPSALNALNTNMGARLLKLYKSWEENPDVGFVM 96

Query: 84  MKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMG 143
           MKGSGRAFCAGGDIV+LY+ + +GKLE+CK+FFRTLY+FIY+LGT+LKPHVAIL+G+TMG
Sbjct: 97  MKGSGRAFCAGGDIVTLYNLVKKGKLEDCKEFFRTLYTFIYILGTYLKPHVAILDGITMG 156

Query: 144 GGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA 203
           GGAGVSIPGTFR+A  KTVFATPETLIGFHPDAGASF+LSHLPGHLGE+LALTG  LNG 
Sbjct: 157 GGAGVSIPGTFRIATDKTVFATPETLIGFHPDAGASFHLSHLPGHLGEYLALTGETLNGV 216

Query: 204 EMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV 263
           EM+ACGLATHYS SE+L LI+++LG+LVTDDPSVIEA LEKY DLV+PDK S +HRI+ V
Sbjct: 217 EMIACGLATHYSYSERLQLIDQQLGQLVTDDPSVIEATLEKYGDLVHPDKMSALHRIETV 276

Query: 264 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDE 323
           D+CFG DTVEEI ++LESEAS  ND +C STLR LKEASPLSLKVSLRSIREGRFQT D+
Sbjct: 277 DRCFGYDTVEEIFEALESEASGTNDAFCNSTLRRLKEASPLSLKVSLRSIREGRFQTLDQ 336

Query: 324 CLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
           CLVREYRMSLQG+S+ IS DFYE    +++++
Sbjct: 337 CLVREYRMSLQGISKQISNDFYEGVRARMVDR 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136292|ref|XP_002326825.1| predicted protein [Populus trichocarpa] gi|222835140|gb|EEE73575.1| predicted protein [Populus trichocarpa]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/339 (74%), Positives = 291/339 (85%), Gaps = 3/339 (0%)

Query: 17  RALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWEND 76
           R+LS   +S    DDL NQVLVE KANSR AILNRPSALNALNTNMGA+L KL+KAWE D
Sbjct: 36  RSLS---SSPPTEDDLDNQVLVEDKANSRSAILNRPSALNALNTNMGARLLKLYKAWEKD 92

Query: 77  PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 136
            ++GFV++KGSGRAF AGGDIV+LYH +NQGK E C++FF TLY+FIY+LGT+LKPHVAI
Sbjct: 93  SSVGFVTLKGSGRAFSAGGDIVNLYHLINQGKWEACREFFGTLYTFIYVLGTYLKPHVAI 152

Query: 137 LNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALT 196
           LNG+TMGGG G+SIPGTFR+A  KTVFATPETLIGFHPDAGASF+LSHLPGHLGE+LALT
Sbjct: 153 LNGITMGGGTGISIPGTFRLATDKTVFATPETLIGFHPDAGASFFLSHLPGHLGEYLALT 212

Query: 197 GAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSV 256
           G  LNGAEM+ACGLATHY+ SEKL L+E  LGKLVTDDPSVIE  LE+Y DLVYPDK SV
Sbjct: 213 GGTLNGAEMIACGLATHYTNSEKLHLVEHHLGKLVTDDPSVIETSLEQYGDLVYPDKMSV 272

Query: 257 IHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREG 316
           +HRI++VDKCF  DTVEEI D+LE EA+  ND W  STLR LKEASPLSLKVSLRSI+EG
Sbjct: 273 LHRIEMVDKCFSHDTVEEIFDALEREAAETNDAWFNSTLRRLKEASPLSLKVSLRSIQEG 332

Query: 317 RFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
           RFQT D+CLVREYRMSLQG+S+ ISGDF E    ++++K
Sbjct: 333 RFQTLDQCLVREYRMSLQGISKQISGDFCEGVRARMVDK 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504605|ref|XP_003521086.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Glycine max]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/322 (72%), Positives = 277/322 (86%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           NQVLVEG   SRMAILNRPSALNALNTNM A L+KL+++WE DP+IGFV +KGSGRAF A
Sbjct: 42  NQVLVEGNGFSRMAILNRPSALNALNTNMAATLHKLYRSWEEDPDIGFVMLKGSGRAFAA 101

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGDIV+LYH +N+G LE CK+FFRT YSF+YL+GT+LKPHVA+LNG+TMGGGAG+SIPGT
Sbjct: 102 GGDIVALYHLINKGNLEACKEFFRTAYSFMYLIGTYLKPHVALLNGITMGGGAGISIPGT 161

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FRVA  KT+FATPE LIGFHPDA ASFYLSHLPG LGE+LALTG KLNG EM+ACGLATH
Sbjct: 162 FRVATDKTIFATPEVLIGFHPDAAASFYLSHLPGQLGEYLALTGEKLNGVEMVACGLATH 221

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           YS S +LPLIEE+LGKLVTDDPSVIE  LE+Y ++V+ D +SV+ RI+++DKCF  DTVE
Sbjct: 222 YSSSARLPLIEEQLGKLVTDDPSVIETTLEQYGEIVHLDSSSVLQRIEVLDKCFCHDTVE 281

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EI+D++E+ AS  ND WC STL  LKEASPLSLKV+LRSIREGRFQT D+CL+REYRM+L
Sbjct: 282 EIVDAMENAASETNDAWCISTLNKLKEASPLSLKVALRSIREGRFQTLDQCLLREYRMTL 341

Query: 334 QGVSRLISGDFYEVSNFQILNK 355
           Q + R ISGDF E    ++++K
Sbjct: 342 QAIHRQISGDFCEGVRARVVDK 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512815|ref|XP_003626696.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula] gi|355520718|gb|AET01172.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/348 (67%), Positives = 283/348 (81%), Gaps = 9/348 (2%)

Query: 17  RALSQHRTSSSVTDDLCN---------QVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
           R+L   R S  +T  L N          VLVEG   SR+A+LNRPS+LNA+NTNM A+L+
Sbjct: 10  RSLLMQRNSRRLTTTLSNSVDHHLLQDNVLVEGNGYSRLALLNRPSSLNAINTNMAARLH 69

Query: 68  KLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG 127
           KL+++WE++P+IGFV +KG+GRAF AGGDIVSLY F+ QG LE CK FFRT YSFIYL+G
Sbjct: 70  KLYRSWEDNPDIGFVMLKGTGRAFAAGGDIVSLYRFIKQGNLEACKQFFRTAYSFIYLIG 129

Query: 128 THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 187
           T+LKPHVA+LNG+TMGGGAG+SIPGTFR+A  KTVFATPE LIGFHPDA ASFYLS LPG
Sbjct: 130 TYLKPHVALLNGITMGGGAGISIPGTFRLATDKTVFATPEVLIGFHPDAAASFYLSRLPG 189

Query: 188 HLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSD 247
           H+GE+LALTG KLNG EM+ACGLATHYS+  +LPLIEE+LGKLVTDDPSVIE  LE+Y D
Sbjct: 190 HIGEYLALTGEKLNGVEMVACGLATHYSLLARLPLIEEQLGKLVTDDPSVIETTLEQYGD 249

Query: 248 LVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLK 307
           LV+P  +SV+ R++I+DKCFG DTVEEI+D+LE  A    D WC STL  LKEASPLSLK
Sbjct: 250 LVHPGSSSVLQRLEILDKCFGHDTVEEIVDALEVAAGQTKDAWCISTLNRLKEASPLSLK 309

Query: 308 VSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
           VSLRSIREGRFQT D+CL+REYRM+LQ +S+ ISGDF E    ++++K
Sbjct: 310 VSLRSIREGRFQTLDQCLLREYRMTLQAISKQISGDFCEGVRARVVDK 357

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453474|ref|XP_002274299.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial [Vitis vinifera] gi|297734569|emb|CBI16620.3| unnamed protein product [Vitis vinifera]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/363 (65%), Positives = 289/363 (79%), Gaps = 10/363 (2%)

Query: 1   MQRLKISNISRYFNDLRAL---SQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRP 52
           MQ LK+  + R  + +R+    + HR  S V      +D  ++VLVEG+  SR AILNRP
Sbjct: 1   MQSLKV--LWRRRSGIRSPPFPTHHRAFSYVPNPAAANDFDSEVLVEGEGCSRTAILNRP 58

Query: 53  SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112
             LNALNT+MGA+L  L+K+WE +P+IGFV MKGSGRAFCAGGDIV LY+ +N+G++E+C
Sbjct: 59  HVLNALNTSMGARLQNLYKSWEENPDIGFVVMKGSGRAFCAGGDIVGLYNLINKGRIEDC 118

Query: 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 172
           K+FF T+YSFIYL+GT+LKP+VAIL+G+TMGGGAGVSIPG FRVA  +TVFATPETLIGF
Sbjct: 119 KEFFGTVYSFIYLVGTYLKPNVAILDGITMGGGAGVSIPGMFRVATDRTVFATPETLIGF 178

Query: 173 HPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVT 232
           H DAGASF+LSHLPG+ GE+LALTG KLNG EM+ACGLATHY+ S KLPLIEE LGKLVT
Sbjct: 179 HTDAGASFHLSHLPGYWGEYLALTGEKLNGPEMIACGLATHYAPSAKLPLIEEGLGKLVT 238

Query: 233 DDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCG 292
           DDPSVIEA LE+Y  L+ PD   ++ RI+ +DKCF   TVEEIID+LESE +   DPWC 
Sbjct: 239 DDPSVIEASLEQYGSLISPDNRGLLQRIETLDKCFSHGTVEEIIDALESETARTQDPWCS 298

Query: 293 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 352
           STL+ LKEASPLSLKV LRSIREGRFQT D+CLVREYRMS+QG+S  IS DF E    ++
Sbjct: 299 STLKRLKEASPLSLKVCLRSIREGRFQTLDQCLVREYRMSVQGISGQISNDFCEGIRARM 358

Query: 353 LNK 355
           + K
Sbjct: 359 VEK 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442604|ref|XP_004139071.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Cucumis sativus]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 294/361 (81%), Gaps = 6/361 (1%)

Query: 1   MQRLKISNISRY-FNDLRALSQHRTSSSVTD-----DLCNQVLVEGKANSRMAILNRPSA 54
           +Q LK++  +R     +R L+Q R   S+ D     D   +VLVEG+A SR AILNRPS 
Sbjct: 2   VQSLKVALFTRRSLQTIRLLTQTRNQCSLLDHSSDHDHEQEVLVEGRAWSRTAILNRPSI 61

Query: 55  LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD 114
           LNALNTNMGA+L++L+ +WE +P++GFV +KGSGRAFCAGGDIVSLYH +N+G++E CK 
Sbjct: 62  LNALNTNMGARLHELYNSWEENPDVGFVVLKGSGRAFCAGGDIVSLYHMINEGEIEHCKK 121

Query: 115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP 174
           FF TLY+FIY++GT+LKPHVAILNG+TMGGG G+SIPGTFRVA  KTVFATPETLIGFHP
Sbjct: 122 FFSTLYAFIYMVGTYLKPHVAILNGITMGGGTGISIPGTFRVATDKTVFATPETLIGFHP 181

Query: 175 DAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDD 234
           DAGASF+LSHLPG +GE+L LTG KL G EM+ACG+ATHYS S +LPLIEE LG LVTDD
Sbjct: 182 DAGASFHLSHLPGRMGEYLGLTGEKLKGEEMVACGVATHYSHSSRLPLIEEHLGNLVTDD 241

Query: 235 PSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGST 294
            S++E+ L K+ D V+ DK SV+HRI+I+DKCF  DTVEEIIDSLE E+S   DPWC ST
Sbjct: 242 ASIVESSLNKFGDRVHLDKTSVLHRIEILDKCFSHDTVEEIIDSLEIESSKTKDPWCIST 301

Query: 295 LRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN 354
           L+ LKEASPLSLKVSL+SIREGR+QT D+CL+REYRMSLQG+S+ IS DF E    ++++
Sbjct: 302 LKRLKEASPLSLKVSLKSIREGRYQTLDQCLIREYRMSLQGISKQISSDFCEGVRARLVD 361

Query: 355 K 355
           K
Sbjct: 362 K 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430480|ref|XP_002283319.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Vitis vinifera] gi|296082135|emb|CBI21140.3| unnamed protein product [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/342 (64%), Positives = 276/342 (80%), Gaps = 5/342 (1%)

Query: 19  LSQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAW 73
            S HR+ S++      DDL  QVLVEG+A SR AILNRPS LNAL   M A+L +L+++W
Sbjct: 22  FSHHRSFSALPNYARNDDLQEQVLVEGRAKSRAAILNRPSDLNALTIPMVARLKRLYESW 81

Query: 74  ENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 133
           E + ++GFV MKGSGRA C+GGD+V+L   +N+GK+EECK FF TLY F+YLLGT++KP+
Sbjct: 82  EENSDLGFVIMKGSGRALCSGGDVVALNQLINEGKVEECKKFFETLYKFVYLLGTYVKPN 141

Query: 134 VAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL 193
           VAI++G+TMGGGAG+SIP  FRV   KTVFATPET +GFHPDAGASFYLS LPG+LGE+L
Sbjct: 142 VAIVDGITMGGGAGISIPAMFRVVTDKTVFATPETQMGFHPDAGASFYLSRLPGYLGEYL 201

Query: 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK 253
           ALTG KLNG EM+ACGLATHYS++ +LPLIEE LGKL+TDDPSVIE+ LE+Y DLVYPDK
Sbjct: 202 ALTGEKLNGVEMIACGLATHYSLTARLPLIEERLGKLITDDPSVIESSLEQYGDLVYPDK 261

Query: 254 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSI 313
            SV+H+I+ +DKCF  DTVEEII++LE+EAS   D W  + L+ LKEASPLSLKV+LRSI
Sbjct: 262 RSVLHKIETIDKCFCHDTVEEIINALENEASSSYDEWSATALKKLKEASPLSLKVTLRSI 321

Query: 314 REGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
           REGRFQ  D+CL REYR+SL G+++ +S DF E    + ++K
Sbjct: 322 REGRFQPLDQCLAREYRISLVGITKWVSDDFCEGVRARFVDK 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326507476|dbj|BAK03131.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/345 (64%), Positives = 280/345 (81%), Gaps = 5/345 (1%)

Query: 11  RYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLF 70
           RY + LR      + ++      ++VLVEGKA++R ++LNRP  LNAL T MGA+LNK +
Sbjct: 41  RYLSSLRP-----SPATPAAHDSDEVLVEGKASARASVLNRPGHLNALTTTMGARLNKFY 95

Query: 71  KAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL 130
           ++WE+ P+IGFV MKGSGRAFCAGGD+V L   +N+GKL+E KDFFRTLYSFIY+LGT+L
Sbjct: 96  ESWEDSPDIGFVMMKGSGRAFCAGGDVVGLRQLINEGKLDESKDFFRTLYSFIYVLGTYL 155

Query: 131 KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG 190
           KPHVAIL+GVTMGGG GVSIPGTFRVA  +TVFATPE  IGFHPDA ASFYLSHL GH+G
Sbjct: 156 KPHVAILDGVTMGGGGGVSIPGTFRVATDRTVFATPEVHIGFHPDAAASFYLSHLTGHVG 215

Query: 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVY 250
           E+LALTG KLNG +M+A GLATHYS+S+ L L++E L KLVTDDPSVI++ L +Y DLVY
Sbjct: 216 EYLALTGEKLNGVDMLALGLATHYSMSDHLDLVDERLAKLVTDDPSVIDSSLAQYGDLVY 275

Query: 251 PDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSL 310
           PDK S++HR+ ++DKCF  +TVEEI+D+LESEA+ +N+ WC   L+ LKEASPL+LKVSL
Sbjct: 276 PDKTSIVHRLAVIDKCFSHETVEEIVDALESEAAQLNEEWCTLALKRLKEASPLALKVSL 335

Query: 311 RSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
           RSIREGR+QT DECLVREYRMS+ G+S+ +  DF E    ++++K
Sbjct: 336 RSIREGRYQTLDECLVREYRMSVNGISKPLYHDFCEGVRARLVDK 380

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242035143|ref|XP_002464966.1| hypothetical protein SORBIDRAFT_01g029600 [Sorghum bicolor] gi|241918820|gb|EER91964.1| hypothetical protein SORBIDRAFT_01g029600 [Sorghum bicolor]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/322 (67%), Positives = 269/322 (83%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           ++VLVEGKA +R A+LNRP  LNAL T MGA+LNK +++WE++P+IGFV MKGSGRAFCA
Sbjct: 41  DEVLVEGKATARAAVLNRPGYLNALTTTMGARLNKFYESWEDNPDIGFVMMKGSGRAFCA 100

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGD+V L   +++GKLEECKDFF+TLY FIY LGT+LKPH+AIL+GVTMGGG GVSIPGT
Sbjct: 101 GGDVVRLRELISEGKLEECKDFFKTLYMFIYFLGTYLKPHIAILDGVTMGGGGGVSIPGT 160

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FR+A  +TVFATPE  IGFHPDA ASFYLSHL GH+GE++ALTG KLNG +M+A GLATH
Sbjct: 161 FRIATDRTVFATPEVHIGFHPDAAASFYLSHLTGHVGEYVALTGEKLNGTDMIALGLATH 220

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           YS+S  L LI+E L KLVTDDPSVI++ L +Y D+VYPDK S++HR++++DKCF  DTVE
Sbjct: 221 YSMSGHLDLIDERLAKLVTDDPSVIDSSLAQYGDMVYPDKESIVHRLEVIDKCFSHDTVE 280

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EI+D+LESEA+  N+ WC   L+ LKEASPL+LKVSLRSIREGR+QT DECLVREYRMS+
Sbjct: 281 EIVDALESEAASSNEEWCTLALKRLKEASPLALKVSLRSIREGRYQTLDECLVREYRMSM 340

Query: 334 QGVSRLISGDFYEVSNFQILNK 355
            G+S+  S +F E    +++ K
Sbjct: 341 NGISKQFSHEFCEGVRARLVEK 362

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223973415|gb|ACN30895.1| unknown [Zea mays] gi|414867666|tpg|DAA46223.1| TPA: hypothetical protein ZEAMMB73_952637 [Zea mays]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/343 (64%), Positives = 279/343 (81%), Gaps = 3/343 (0%)

Query: 13  FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
           F  LR LS  +  ++ + D   +VLVEGK ++R A+LNRP  LNAL T MGA+LNK +++
Sbjct: 23  FGGLRPLSSLQPLNAASSD---EVLVEGKTSARAAVLNRPGYLNALTTTMGARLNKFYQS 79

Query: 73  WENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKP 132
           WE++P+IGFV MKGSGRAFCAGGD+V L+  +++GKLEECKDFF+TLY FIY LGT+LKP
Sbjct: 80  WEDNPDIGFVMMKGSGRAFCAGGDVVRLHELISEGKLEECKDFFKTLYMFIYFLGTYLKP 139

Query: 133 HVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 192
           HVAIL+G+TMGGG GVSIPGTFRVA  +TVFATPE  IGFHPDA ASFYLSHL GH+GE+
Sbjct: 140 HVAILDGITMGGGGGVSIPGTFRVATDRTVFATPEVHIGFHPDAAASFYLSHLTGHVGEY 199

Query: 193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD 252
           +ALTG KLNG +M+A GLATHY +S  L LI+E L KLVTDDPSVI++ L +Y D+VYPD
Sbjct: 200 VALTGEKLNGTDMIALGLATHYFMSGHLDLIDERLAKLVTDDPSVIDSSLAQYGDMVYPD 259

Query: 253 KNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRS 312
           K S++HR++++DKCF  DTVEEI+D+LESEA+  N+ WC   L+ LKEASPL+LKVSLRS
Sbjct: 260 KKSIVHRLEVIDKCFSHDTVEEIVDALESEAASSNEEWCILALKRLKEASPLALKVSLRS 319

Query: 313 IREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
           IREGR+QT DECLVREYRMS+ G+S+  S +F E    ++++K
Sbjct: 320 IREGRYQTLDECLVREYRMSMNGISKQFSHEFCEGVRARLVDK 362

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2116797	409	AT4G31810 [Arabidopsis thalian	0.994	0.867	0.585	1.2e-111
TAIR|locus:2054437	378	AT2G30660 [Arabidopsis thalian	0.901	0.851	0.490	1.1e-78
TAIR|locus:2152069	378	CHY1 "beta-hydroxyisobutyryl-C	0.876	0.828	0.485	7.1e-77
TAIR|locus:2054517	378	AT2G30650 [Arabidopsis thalian	0.901	0.851	0.472	7.3e-75
TAIR|locus:2009180	387	AT1G06550 [Arabidopsis thalian	0.865	0.798	0.421	2.5e-65
UNIPROTKB|Q6NVY1	386	HIBCH "3-hydroxyisobutyryl-CoA	0.946	0.875	0.385	8.6e-56
RGD|1308392	385	Hibch "3-hydroxyisobutyryl-CoA	0.941	0.872	0.372	5.5e-54
MGI|MGI:1923792	385	Hibch "3-hydroxyisobutyryl-Coe	0.949	0.880	0.370	7e-54
UNIPROTKB|Q5ZJ60	385	HIBCH "3-hydroxyisobutyryl-CoA	0.929	0.862	0.366	8.9e-54
UNIPROTKB|F1P188	385	HIBCH "3-hydroxyisobutyryl-CoA	0.929	0.862	0.366	1.1e-53

TAIR|locus:2116797 AT4G31810 [Arabidopsis thaliana (taxid:3702)]

 Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
 Identities = 212/362 (58%), Positives = 280/362 (77%)

Query:     1 MQRLK-ISNISRYFNDLRALSQHRTSS-----SVTD-DLCNQVLVEGKANSRMAILNRPS 53
             MQ +K +  +S     +R++S  R  S     S +D D  +QVLVEGKA SR AILN PS
Sbjct:     1 MQTVKALRRVSEPLQWVRSVSYGRRFSALPNYSASDADFEDQVLVEGKAKSRAAILNNPS 60

Query:    54 ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113
             +LNAL+  M  +L +L+++WE +P I FV MKGSG+ FC+G D++SLYH +N+G  EE K
Sbjct:    61 SLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEESK 120

Query:   114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH 173
              FF  LY F+YL GT+LKP++AI++GVTMG G G+S+PG FRVA  KTV A PE  IGFH
Sbjct:   121 LFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGFH 180

Query:   174 PDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD 233
             PDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE +GKL+TD
Sbjct:   181 PDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERIGKLLTD 240

Query:   234 DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGS 293
             DP+VIE  L +Y DLVYPD +SV+H+I+++DK FGLDTVEEII+++E+EA+   + WC  
Sbjct:   241 DPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGLDTVEEIIEAMENEAANSCNEWCKK 300

Query:   294 TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL 353
             TL+ +KEASPLSLK++L+SIREGRFQT D+CL  EYR+S+ GVS+++SGDF E    +++
Sbjct:   301 TLKQIKEASPLSLKITLQSIREGRFQTLDQCLTHEYRISICGVSKVVSGDFCEGIRARLV 360

Query:   354 NK 355
             +K
Sbjct:   361 DK 362

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2054437 AT2G30660 [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 158/322 (49%), Positives = 216/322 (67%)

Query:    34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
             +QVLVE K++ R+  LNRP  LNAL  NM ++L +LF+A+E DP++  V +KG GRAFCA
Sbjct:     5 SQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCA 64

Query:    94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
             GGD+  +   M QGK     DFFR  Y+  Y++ T+ KP V+ILNG+ MG GAGVSI G 
Sbjct:    65 GGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGR 124

Query:   154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
             FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAE++ACGLATH
Sbjct:   125 FRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATH 184

Query:   214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
             +  S +L  +E +L K+ + DPS +   L+ Y+   +  + S  HR+D++D+CF   T+E
Sbjct:   185 FVPSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTME 244

Query:   274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
             EII +LE E +   D W  +T+R LK++SP SLK+SLRSIREGR Q    CL REYRM  
Sbjct:   245 EIISALERETTQELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYRMVC 304

Query:   334 QGVSRLISGDFYEVSNFQILNK 355
               +   +S D  E     +++K
Sbjct:   305 HVMKGDLSKDLVEGCRAILIDK 326

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2152069 CHY1 "beta-hydroxyisobutyryl-CoA hydrolase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 152/313 (48%), Positives = 213/313 (68%)

Query:    34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
             +QVLVE K++ R+  LNRP  LNAL+ +M ++L +LF A+E DP++  V +KG GRAFCA
Sbjct:     9 SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68

Query:    94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
             GGD+ ++   +NQG      ++F + Y   Y++ T+ K  V+ILNG+ MGGGAGVS+ G 
Sbjct:    69 GGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128

Query:   154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
             FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct:   129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188

Query:   214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
             +  S +L  +E +L ++ ++DP+     L+ Y+      + S   R+D++D+CF   TVE
Sbjct:   189 FVPSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVE 248

Query:   274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
             EII +LE EA+   D W  +T++ LK+ SP SLK+SLRSIREGR Q   +CL+REYRM  
Sbjct:   249 EIISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMVC 308

Query:   334 QGVSRLISGDFYE 346
               +   IS DF E
Sbjct:   309 HVMKGEISKDFVE 321

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IGI;IDA

GO:0006574 "valine catabolic process" evidence=NAS;IMP

GO:0006635 "fatty acid beta-oxidation" evidence=TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

TAIR|locus:2054517 AT2G30650 [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 152/322 (47%), Positives = 216/322 (67%)

Query:    34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
             +QVLVE K++ R+   NRP  LNAL+ +M ++L +LF A+E DP++  V +KG GRAF A
Sbjct:     5 SQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSA 64

Query:    94 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
             GGDI  +   + QGKL     +F+  Y+  Y+L T+ KP V+ILNG+ MGGGAG+S  G 
Sbjct:    65 GGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGR 124

Query:   154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
             FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct:   125 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 184

Query:   214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
             +  S  L  +E EL K+ + + + I   L+ Y++  + +++S  HR+D++D+CF   TVE
Sbjct:   185 FVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVE 244

Query:   274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
             EI  +LE E +   + W  +T++ L++ASP  LK+SLRSIREGR Q   +CL+REYRM  
Sbjct:   245 EIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVC 304

Query:   334 QGVSRLISGDFYEVSNFQILNK 355
               +   IS DF E     +++K
Sbjct:   305 HVMKGDISKDFVEGCRAVLIDK 326

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2009180 AT1G06550 [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 131/311 (42%), Positives = 198/311 (63%)

Query:    36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
             V+ E K + R+  LNRP  LN ++  +  KL +  + WE D     + +KG+GRAF AGG
Sbjct:    13 VIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGG 72

Query:    96 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
             D+   YH   Q   + C +    +Y   Y + T+ K  V+++NG++MGGGA + +P  F 
Sbjct:    73 DLKVFYH--GQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFS 130

Query:   156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
             V   KTVFATPE   GFH D G S+  S LPGHLGEFLALTGA+LNG E++A G+ATH+ 
Sbjct:   131 VVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGMATHFV 190

Query:   216 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275
              S KL  +E  L  L + D  V+++ +E++S+ V  DK+S++++  ++++CF  ++V++I
Sbjct:   191 PSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKESVKQI 250

Query:   276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG 335
             I + E+EAS   + W    ++ LK +SP  LK+ L+SIREGR QT  +CL +E+R++L  
Sbjct:   251 IQAFEAEASKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFRLTLNI 310

Query:   336 VSRLISGDFYE 346
             + + IS D YE
Sbjct:   311 LRKTISPDMYE 321

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

UNIPROTKB|Q6NVY1 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 136/353 (38%), Positives = 200/353 (56%)

Query:     9 ISRY--FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKL 66
             +SR+  F     +  H   S  TD    +VL+E K  + +  LNRP  LNAL  NM  ++
Sbjct:    10 MSRFNAFKRTNTILHHLRMSKHTD-AAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQI 68

Query:    67 NKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 125
                 K WE DP    + +KG+G +AFCAGGDI  +     + K +    FFR  Y     
Sbjct:    69 YPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISE-AEKAKQKIAPVFFREEYMLNNA 127

Query:   126 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 185
             +G+  KP+VA+++G+TMGGG G+S+ G FRVA  K +FA PET IG  PD G  ++L  L
Sbjct:   128 VGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRL 187

Query:   186 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY 245
              G LG FLALTG +L G ++   G+ATH+  SEKL ++EE+L  L +     I + LE Y
Sbjct:   188 QGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENY 247

Query:   246 --SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEAS 302
                  +  DK+ ++   +D ++ CF  +TVEEII++L+ + S     +    L+++ + S
Sbjct:   248 HTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGS----SFALEQLKVINKMS 303

Query:   303 PLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
             P SLK++LR + EG  +T  E L  EYR+S Q   R    DF+E     +++K
Sbjct:   304 PTSLKITLRQLMEGSSKTLQEVLTMEYRLS-QACMR--GHDFHEGVRAVLIDK 353

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

RGD|1308392 Hibch "3-hydroxyisobutyryl-CoA hydrolase" [Rattus norvegicus (taxid:10116)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 131/352 (37%), Positives = 202/352 (57%)

Query:    10 SRYFNDLRA--LSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
             SR+ +  RA  + QH   S  T+    +VL+E +  + +  LNRP  LNAL+ NM  ++ 
Sbjct:    11 SRFSSIRRASVILQHLRMSKHTETA--EVLLERRGCAGVITLNRPKLLNALSLNMIRQIY 68

Query:    68 KLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL 126
                K WE DP+   + +KG+G +AFCAGGDI +L      G+    +D FR  Y     +
Sbjct:    69 PQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQTLS-QDLFREEYILNNAI 127

Query:   127 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 186
              +  KP+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  L 
Sbjct:   128 ASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ 187

Query:   187 GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY- 245
             G LG FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE Y 
Sbjct:   188 GKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYH 247

Query:   246 -SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASP 303
                 +  DK+ +    +D ++ CF  +TVE+I+++L  + S    P+    ++++ + SP
Sbjct:   248 AKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLRQDGS----PFAMEQIKVINKMSP 303

Query:   304 LSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
              SLK++LR + EG  +T  E L  EYR++ Q        DF+E     +++K
Sbjct:   304 TSLKITLRQLMEGSTKTLQEVLTMEYRLT-QACME--GHDFHEGVRAVLIDK 352

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006574 "valine catabolic process" evidence=IEA

MGI|MGI:1923792 Hibch "3-hydroxyisobutyryl-Coenzyme A hydrolase" [Mus musculus (taxid:10090)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 131/354 (37%), Positives = 202/354 (57%)

Query:     6 ISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAK 65
             +S +S  F     + QH   S  T+    +VL+E +    +  LNRP  LNAL+ NM  +
Sbjct:    10 LSRVSS-FRRASVILQHLRMSMHTE--AAEVLLERRGCGGVITLNRPKFLNALSLNMIRQ 66

Query:    66 LNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 124
             +    K WE DP+   + +KG+G +AFCAGGDI +L     + +    +D FR  Y    
Sbjct:    67 IYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSE-AKKARQNLTQDLFREEYILNN 125

Query:   125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH 184
              + +  KP+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  
Sbjct:   126 AIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPR 185

Query:   185 LPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEK 244
             L G LG FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE 
Sbjct:   186 LQGKLGYFLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLES 245

Query:   245 YSDLVYPDKN-SVI--HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA 301
             Y      D++ S+I    +D ++ CF  +TVE+II++L  + S    P+    ++++ + 
Sbjct:   246 YHAKSKMDQDKSIIFEEHMDKINSCFSANTVEQIIENLRQDGS----PFAIEQMKVINKM 301

Query:   302 SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
             SP SLK++LR + EG  +T  E L+ EYR++ Q        DF+E     +++K
Sbjct:   302 SPTSLKITLRQLMEGSSKTLQEVLIMEYRIT-QACME--GHDFHEGVRAVLIDK 352

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q5ZJ60 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 128/349 (36%), Positives = 197/349 (56%)

Query:    13 FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
             FN L+ + QH  +   TD   + VL++ +  + +  LNRP  LNAL+  M  ++    KA
Sbjct:    15 FNRLQVILQHLKTCKHTDSAAD-VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKA 73

Query:    73 WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTH 129
             WE DP    + +KG+G +AFCAGGD+ ++    + GK  +   +D+FR  Y     +GT 
Sbjct:    74 WEQDPETFLIIIKGTGEKAFCAGGDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTC 130

Query:   130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189
              KP+VA+++G+TMGGG G+S+ G FRVA  KTVFA PET IG  PD G  ++L  L G +
Sbjct:   131 KKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKI 190

Query:   190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SD 247
             G  LALTG +L G +++  G+ATH+  S KLP +E++L  L +     I   L  Y    
Sbjct:   191 GHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQT 250

Query:   248 LVYPDKNSVI-HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSL 306
              +  +K  V+   ++ ++  F  +++EEI+  L+ + S    P+    L  + + SP SL
Sbjct:   251 KIDQEKEFVLDEHMERINSIFSANSMEEIVQKLKQDGS----PFATKQLEAINKMSPTSL 306

Query:   307 KVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
             K++LR +REG   +  +    EYR+S Q   R    DFYE     +++K
Sbjct:   307 KLTLRQLREGATMSLQDVFTMEYRLS-QACMR--GHDFYEGVRAVLIDK 352

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1P188 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 128/349 (36%), Positives = 197/349 (56%)

Query:    13 FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
             FN L+ + QH  +   TD   + VL++ +  + +  LNRP  LNAL+  M  ++    KA
Sbjct:    15 FNRLQVILQHLKTCKHTDSAAD-VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKA 73

Query:    73 WENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTH 129
             WE DP    + +KG+G +AFCAGGD+ ++    + GK  +   +D+FR  Y     +GT 
Sbjct:    74 WEQDPETFLIIIKGTGEKAFCAGGDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTC 130

Query:   130 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 189
              KP+VA+++G+TMGGG G+S+ G FRVA  KTVFA PET IG  PD G  ++L  L G +
Sbjct:   131 KKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKI 190

Query:   190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SD 247
             G  LALTG +L G +++  G+ATH+  S KLP +E++L  L +     I   L  Y    
Sbjct:   191 GHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQT 250

Query:   248 LVYPDKNSVI-HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSL 306
              +  +K  V+   ++ ++  F  +++EEI+  L+ + S    P+    L  + + SP SL
Sbjct:   251 KIDQEKEFVLDEHMERINSIFSANSMEEIVHKLKQDGS----PFATKQLEAINKMSPTSL 306

Query:   307 KVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
             K++LR +REG   +  +    EYR+S Q   R    DFYE     +++K
Sbjct:   307 KLTLRQLREGATMSLQDVFTMEYRLS-QACMR--GHDFYEGVRAVLIDK 352

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5XF59	HIBC4_ARATH	3, ., 1, ., 2, ., -	0.6920	0.9187	0.8179	yes	no
Q28FR6	HIBCH_XENTR	3, ., 1, ., 2, ., 4	0.3690	0.9299	0.8623	yes	no
Q5ZJ60	HIBCH_CHICK	3, ., 1, ., 2, ., 4	0.3698	0.9103	0.8441	yes	no
Q6NVY1	HIBCH_HUMAN	3, ., 1, ., 2, ., 4	0.3981	0.8879	0.8212	yes	no
Q8QZS1	HIBCH_MOUSE	3, ., 1, ., 2, ., 4	0.3796	0.8767	0.8129	yes	no
Q5XIE6	HIBCH_RAT	3, ., 1, ., 2, ., 4	0.3829	0.8851	0.8207	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	0.766
3rd Layer	3.1.2.4	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.40.97.1	hypothetical protein (381 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_VIII0916	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)			•			•		•	0.907
	grail3.0006050201	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)			•			•		•	0.907
	estExt_fgenesh4_pg.C_LG_VI1023	SubName- Full=Putative uncharacterized protein; (380 aa)			•			•		•	0.907
	eugene3.00013051	hypothetical protein (348 aa)	•	•				•			0.900

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	0.0
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	1e-170
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	1e-123
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	1e-105
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-100
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	7e-40
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	3e-37
pfam13766	117	pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal	3e-27
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	1e-22
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	1e-20
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	1e-17
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	2e-17
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	3e-17
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	5e-17
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	6e-16
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	2e-15
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	2e-14
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	4e-14
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	8e-14
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	9e-14
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	4e-13
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	9e-13
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	2e-12
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	2e-12
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	2e-12
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	2e-12
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	4e-12
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	5e-12
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	2e-11
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	2e-11
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	3e-11
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	2e-10
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	3e-10
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	5e-10
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	9e-10
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	9e-10
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	1e-09
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	2e-09
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	3e-09
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	5e-09
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	6e-09
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	7e-09
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	4e-08
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	6e-08
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	9e-08
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	2e-07
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	5e-07
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	8e-07
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	3e-06
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	4e-06
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	4e-06
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	5e-06
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	6e-06
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	9e-06
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	9e-06
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	1e-05
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	2e-05
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	3e-05
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	9e-05
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	3e-04
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	3e-04
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	7e-04
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	8e-04
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	0.003
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	0.004

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  518 bits (1335), Expect = 0.0
 Identities = 224/354 (63%), Positives = 284/354 (80%), Gaps = 8/354 (2%)

Query: 1   MQRLK-ISNISRYFNDLR--ALSQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRP 52
           MQR+K +  ++     +R  ++S  R+ S++      DDL +QVLVEG+A SR AILNRP
Sbjct: 1   MQRVKALRRVAVPLQWVRFGSVSYGRSFSALPNYAANDDLQDQVLVEGRAKSRAAILNRP 60

Query: 53  SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC 112
           S+LNAL   M A+L +L+++WE +P+IGFV MKGSGRAFC+G D+VSLYH +N+G +EEC
Sbjct: 61  SSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120

Query: 113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 172
           K FF  LY F+YL GT+LKP+VAI++G+TMG GAG+SIPG FRV   KTVFA PE  +GF
Sbjct: 121 KLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGF 180

Query: 173 HPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVT 232
           HPDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE LGKL+T
Sbjct: 181 HPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLT 240

Query: 233 DDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCG 292
           DDP+VIE  L +Y DLVYPDK+SV+H+I+ +DKCFG DTVEEII++LE+EA+   D WC 
Sbjct: 241 DDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALENEAASSYDEWCK 300

Query: 293 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 346
             L+ +KEASPLSLKV+L+SIREGRFQT D+CL REYR+SL GVS+ +SGDF E
Sbjct: 301 KALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCE 354

Length = 407

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  480 bits (1236), Expect = e-170
 Identities = 226/327 (69%), Positives = 270/327 (82%)

Query: 29  TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG 88
            +DL  QVLVEG   SR AILNRP ALNAL T+MG +L KL+K WE DPNIGFV MKGSG
Sbjct: 32  PEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG 91

Query: 89  RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGV 148
           RAFCAGGDIVSLYH   +G  +  ++FF +LYSFIYLLGT+LKPHVAILNGVTMGGG GV
Sbjct: 92  RAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGV 151

Query: 149 SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMAC 208
           SIPGTFRVA  +T+FATPET+IGFHPDAGASF LSHLPG LGE+L LTG KL+GAEM+AC
Sbjct: 152 SIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLAC 211

Query: 209 GLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 268
           GLATHY  SE++P++EE+L KL+TDDPSV+E+CLEK +++ +P+K  VI RID+++KCF 
Sbjct: 212 GLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFS 271

Query: 269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE 328
            DTVEEIIDSLE EA    D WC +TLR LKE+SPLSLKV+LRSIREGR QT D+CL+RE
Sbjct: 272 HDTVEEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIRE 331

Query: 329 YRMSLQGVSRLISGDFYEVSNFQILNK 355
           YRMSLQG+   +SG+F E    ++++K
Sbjct: 332 YRMSLQGLIGPMSGNFCEGVRARLIDK 358

Length = 401

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  358 bits (920), Expect = e-123
 Identities = 140/311 (45%), Positives = 204/311 (65%), Gaps = 2/311 (0%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           VL E K   R+  LNRP  LN ++ ++ + L +  + WE D ++  + +KG+GRAF AGG
Sbjct: 13  VLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGG 72

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+   Y    +   + C +    +Y   Y + T+ K  VA+++G+ MGGGAG+ +P  FR
Sbjct: 73  DLKMFYD--GRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFR 130

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
           V   KTVFATPE  +GFH D G S+ LS LPGHLGE+LALTGA+LNG EM+ACGLATH+ 
Sbjct: 131 VVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEYLALTGARLNGKEMVACGLATHFV 190

Query: 216 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 275
            SEKLP +E+ L  L + D S ++  +E++S  V  D++S++++   +++CF  DTVEEI
Sbjct: 191 PSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEI 250

Query: 276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG 335
           I + ESEAS   + W   TL+ L+ +SP  LK++LRSIREGR Q+  ECL +E+R+++  
Sbjct: 251 IKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNI 310

Query: 336 VSRLISGDFYE 346
           +   +S D YE
Sbjct: 311 LRSTVSDDVYE 321

Length = 379

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score =  313 bits (804), Expect = e-105
 Identities = 154/313 (49%), Positives = 212/313 (67%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           +QVLVE K++ R+  LNRP  LNAL+ +M ++L +LF A+E DP++  V +KG GRAFCA
Sbjct: 9   SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           GGD+ ++   + QG      +FF   Y   Y++ T+ K  V+ILNG+ MGGGAGVS+ G 
Sbjct: 69  GGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188

Query: 214 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 273
           +  S +L  +E +L ++ ++DP+     L+ Y+        S  HR+D++D+CF   TVE
Sbjct: 189 FVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVE 248

Query: 274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 333
           EII +LE EA+   D W  +T++ LK+ASP SLK+SLRSIREGR Q   +CL+REYRM  
Sbjct: 249 EIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVC 308

Query: 334 QGVSRLISGDFYE 346
             +   IS DF E
Sbjct: 309 HVMKGEISKDFVE 321

Length = 381

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score =  298 bits (766), Expect = e-100
 Identities = 116/300 (38%), Positives = 171/300 (57%), Gaps = 11/300 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           LNRP ALNAL+  M   ++    AWE+D  +  V ++G+G R FCAGGDI +LY     G
Sbjct: 18  LNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAG 77

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                  FFR  Y    L+  + KP++A+++G+ MGGG G+S  G+ R+   +T  A PE
Sbjct: 78  DPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPE 137

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227
           T IGF PD G +++LS  PG LG +LALTGA+++ A+ +  GLA H+  S  LP + + L
Sbjct: 138 TGIGFFPDVGGTYFLSRAPGALGTYLALTGARISAADALYAGLADHFVPSADLPALLDAL 197

Query: 228 GKLVTDDPS-VIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLI 286
             L  D  + V++A L  ++       + +  +   +D+CF  DTVE+II +LE++    
Sbjct: 198 ISLRWDSGADVVDAALAAFA--TPAPASELAAQRAWIDECFAGDTVEDIIAALEADG--- 252

Query: 287 NDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 346
              +   T   L+  SP SLKV+L  +R  R  T +ECL RE R++L  +    S DF E
Sbjct: 253 -GEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLR---SPDFVE 308

Length = 342

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  139 bits (352), Expect = 7e-40
 Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 3/173 (1%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NAL+  M  +L       E DP++  V + G+G+AFCAG D+  L    + G 
Sbjct: 14  LNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAG- 72

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            EE + F R L   +  L    KP +A +NG  +GGG  +++    R+A     F  PE 
Sbjct: 73  -EEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEV 131

Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
            +G  P  G +  L  L G      L LTG +++  E +  GL       E+L
Sbjct: 132 KLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEEL 184

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  134 bits (338), Expect = 3e-37
 Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 5/191 (2%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE +    +  LNRP  LNALN  M  +L +     E DP++  V + G+G+AF AG 
Sbjct: 7   ILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGA 66

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+         G   E  +  +     +  L    KP +A +NG  +GGG  +++    R
Sbjct: 67  DL-KELLSPEDGNAAE--NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIR 123

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 214
           +A     F  PE  +G  P  G +  L  L G      L LTG  ++ AE +  GL    
Sbjct: 124 IAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDE- 182

Query: 215 SVSEKLPLIEE 225
            V +   L+E 
Sbjct: 183 VVPDAEELLER 193

Length = 257

>gnl|CDD|205939 pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal region

 Score =  103 bits (259), Expect = 3e-27
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 258 HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGR 317
              + +D+CF  DTVEEI+ +LE++       W   TL+ L+  SPLSLKV+L  +R GR
Sbjct: 3   EHREAIDRCFSGDTVEEILAALEADG----SEWAAKTLKTLRSGSPLSLKVTLEQLRRGR 58

Query: 318 FQTFDECLVREYRMSLQGVSRLISGDFYE 346
             +  ECL  EYR++++ ++    GDF E
Sbjct: 59  GLSLAECLRMEYRLAVRCMAH---GDFAE 84

This is the C-terminal region of enoyl-CoA hydratase. Length = 117

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 94.7 bits (236), Expect = 1e-22
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+RP A+NAL+  +  +L +  +  E DP++  + + G   AF AG DI  +        
Sbjct: 13  LDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMAA----EP 68

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           L +   F          L    KP +A +NG  +GGG  +++   +R+A     F  PE 
Sbjct: 69  LAQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEV 128

Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGL 210
            +G  P AG +  L  + G      + LTG ++   E +  GL
Sbjct: 129 KLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGL 171

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 89.5 bits (223), Expect = 1e-20
 Identities = 52/167 (31%), Positives = 71/167 (42%), Gaps = 8/167 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +NRP   NAL   M   L    +A   DP +  V + G+GRAF AGGDI     F     
Sbjct: 20  INRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKD---FPKAPP 76

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             +  D    +  F+  +    KP VA +NG  +G G  +++      A     F+ P  
Sbjct: 77  --KPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFA 134

Query: 169 LIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATH 213
            +G  PDAG S  L  L G     E + L G  L+  E +  GL   
Sbjct: 135 KLGLCPDAGGSALLPRLIGRARAAE-MLLLGEPLSAEEALRIGLVNR 180

Length = 259

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 27/223 (12%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
             V++E + +  +  +NRP ALNALN+    +L+ +    END N+  V + G+G +AF 
Sbjct: 4   KNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFV 63

Query: 93  AGGDIVSLYHFMNQGKLEECKDF-------FRTLYSFIYLLGTHLKPHVAILNGVTMGGG 145
           AG DI      M     EE + F       FR L      L    KP +A +NG  +GGG
Sbjct: 64  AGADISE----MKDLNEEEGRKFGLLGNKVFRKL----ENLD---KPVIAAINGFALGGG 112

Query: 146 AGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGA 203
             +S+    R+A  K  F  PE  +G  P  G +  L+ +  PG   E L  TG  +N  
Sbjct: 113 CELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKE-LIYTGDMINAE 171

Query: 204 EMMACGLATHYSVSEKLPLIEEELG---KLVTDDPSVIEACLE 243
           E +  GL     V E   L+EE      K+  + P  ++ C +
Sbjct: 172 EALRIGLVN--KVVEPEKLMEEAKALANKIAANAPIAVKLCKD 212

Length = 260

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 66/230 (28%), Positives = 95/230 (41%), Gaps = 51/230 (22%)

Query: 29  TDDLCNQVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
                + VL+E  A+  +A+  LNRP A NALN  +  +L + F     DP+I  + + G
Sbjct: 2   MSTATDVVLLERPADG-VALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG 60

Query: 87  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL---------KPHVAIL 137
             + F AG DI     F   G +E            +YL  T           KP +A +
Sbjct: 61  GEKVFAAGADIKE---FATAGAIE------------MYLRHTERYWEAIAQCPKPVIAAV 105

Query: 138 NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF----L 193
           NG  +GGG  +++     VA     F  PE  +G  P AG +     L   +G+F    +
Sbjct: 106 NGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGT---QRLVRAVGKFKAMRM 162

Query: 194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLE 243
           ALTG  +   E +A GL     VSE            V +D   +   LE
Sbjct: 163 ALTGCMVPAPEALAIGL-----VSE------------VVEDEQTLPRALE 195

Length = 261

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 80.2 bits (198), Expect = 3e-17
 Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 7/175 (4%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           + VE +    +  ++RP  LNALN  M  +     K    DP I  V + G GRAFC G 
Sbjct: 2   IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGA 61

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+                D   T Y  I  +    K +++ +NGVT G   G+++   F+
Sbjct: 62  DLSEF-----APDFAI--DLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFK 114

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 210
            A     F T    +G   D G +++L  L G     + + G +    E    GL
Sbjct: 115 FASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEFTAEEAERWGL 169

Length = 248

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 79.4 bits (196), Expect = 5e-17
 Identities = 63/214 (29%), Positives = 91/214 (42%), Gaps = 11/214 (5%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
           VL+E +    +  LNRP  LNALN  +  +L     A E D ++  V + G+G RAF AG
Sbjct: 5   VLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAG 64

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
            DI      +  G     +DF R   +    L    KP +A +NG+  GGG  ++     
Sbjct: 65  ADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHL 124

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG-----EFLALTGAKLNGAEMMACG 209
            +A  + +FA PE  +G  P  G +     LP   G     E L LTG   +    +  G
Sbjct: 125 AIASERALFAKPEIRLGMPPTFGGT---QRLPRLAGRKRALELL-LTGDAFSAERALEIG 180

Query: 210 LATH-YSVSEKLPLIEEELGKLVTDDPSVIEACL 242
           L        E LP       +++   P  + A L
Sbjct: 181 LVNAVVPHEELLPAARALARRIIRHSPVAVAAIL 214

Length = 260

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 25/202 (12%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE +    +  LNRP ALNALN  +  +L     A++ D  IG + + GS +AF AG 
Sbjct: 6   ILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGA 65

Query: 96  DI--VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           DI  ++   FM+  K     D+          +    KP +A + G  +GGG  +++   
Sbjct: 66  DIKEMADLSFMDVYK----GDYITNWEK----VARIRKPVIAAVAGYALGGGCELAMMCD 117

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACG 209
             +A     F  PE  +G  P  G S     L   +G+     L LTG  ++ AE    G
Sbjct: 118 IIIAADTAKFGQPEIKLGVLPGMGGS---QRLTRAVGKAKAMDLCLTGRMMDAAEAERAG 174

Query: 210 LATHYSVSEKLP---LIEEELG 228
           L     VS  +P   L++E L 
Sbjct: 175 L-----VSRVVPADKLLDEALA 191

Length = 257

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 4/196 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NA N  + A+L   F+A + D ++  V + G+G+AFCAG D+  +   M    
Sbjct: 19  LNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKK-MAGYS 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            +E +   R L   +  +    KP +A ++G    GG G+       VA    VF   E 
Sbjct: 78  DDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEV 137

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVS-EKL-PLIEEE 226
            +G  P   + + +  +         LT  + + AE +  GL  H  V  E L   ++E 
Sbjct: 138 RLGLIPATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLV-HEVVPAEALDAKVDEL 196

Query: 227 LGKLVTDDPSVIEACL 242
           L  LV + P  + A  
Sbjct: 197 LAALVANSPQAVRAGK 212

Length = 262

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 8/189 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           LNRP A NAL+  +  +L  +      + N+  V + G+G +AFCAG D+      MN+ 
Sbjct: 19  LNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAG-MNE- 76

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             E+ +     + + + ++    +P +A +NG+ +GGG  +++   FR+A         E
Sbjct: 77  --EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTE 134

Query: 168 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEE 225
           T +   P AG +  L  L   G   E L  TG +++  E    GL      +  L     
Sbjct: 135 TTLAIIPGAGGTQRLPRLIGVGRAKE-LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI 193

Query: 226 ELGKLVTDD 234
           E+ + +  +
Sbjct: 194 EIAEKIASN 202

Length = 260

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 56/180 (31%), Positives = 79/180 (43%), Gaps = 15/180 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
             VE K +  +  LNRP  +NAL+ +   +L ++F  +  DP      + G+G +AF AG
Sbjct: 6   STVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAG 65

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
            D   L      GK    +  F  L S   L     KP +A +NGV MGGG  +++    
Sbjct: 66  ND---LKEQAAGGKRGWPESGFGGLTSRFDL----DKPIIAAVNGVAMGGGFELALACDL 118

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
            VA     FA PE  +G    AG       LP  +G   A    LTG ++   E +  G 
Sbjct: 119 IVAAENATFALPEPRVGLAALAGGLH---RLPRQIGLKRAMGMILTGRRVTAREGLELGF 175

Length = 259

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 70.1 bits (172), Expect = 8e-14
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +N P   NA+   M A+L     A E DP++  + + G+G+AFCAG D+ +L      G+
Sbjct: 18  VNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTAL--GAAPGR 75

Query: 109 LEECKDFFRTLY-SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             E  D  R +Y  F+ +    L P +A +NG  +G G  +++    R+A  K +F    
Sbjct: 76  PAE--DGLRRIYDGFLAVASCPL-PTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARF 132

Query: 168 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLAT 212
             +G HP  GA++ L    G  +     L G + +    +  GLA 
Sbjct: 133 QKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178

Length = 249

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 70.1 bits (172), Expect = 9e-14
 Identities = 57/192 (29%), Positives = 78/192 (40%), Gaps = 24/192 (12%)

Query: 35  QVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFC 92
            VL E  A+S +A+  LNRP  LNA    M A++       E DP +  + + G+GR FC
Sbjct: 6   AVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFC 64

Query: 93  AGGDIVSL----------YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142
           AG D+  L             +         D ++T Y F+  L    KP +A +NG   
Sbjct: 65  AGADMGELQTIDPSDGRRDTDVRPFVGNRRPD-YQTRYHFLTALR---KPVIAAINGACA 120

Query: 143 GGGAGVSIPGTFRVACGKTVFATPET---LIGFHPDAGASFYLSHLPGHLGEF-LALTGA 198
           G G   ++    R A     F T      LI  H   G S+ L  L GH     L L+  
Sbjct: 121 GIGLTHALMCDVRFAADGAKFTTAFARRGLIAEH---GISWILPRLVGHANALDLLLSAR 177

Query: 199 KLNGAEMMACGL 210
                E +  GL
Sbjct: 178 TFYAEEALRLGL 189

Length = 272

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 55/219 (25%), Positives = 84/219 (38%), Gaps = 16/219 (7%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE     R   LNRP A NAL+  +   L       + D ++  V + G+  AFCAG 
Sbjct: 6   LLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGL 65

Query: 96  DIVSL----YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151
           D+  L      +  Q  L                     KP +  +NG  + GG  +++ 
Sbjct: 66  DLKELGGDGSAYGAQDALPNP----------SPAWPAMRKPVIGAINGAAVTGGLELALA 115

Query: 152 GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGL 210
               +A  +  FA     +G  P  G S  L    G      ++LTG  L+ A+ +  GL
Sbjct: 116 CDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGL 175

Query: 211 ATH-YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDL 248
            T      E LP        +  ++P+ + A    Y D 
Sbjct: 176 VTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDG 214

Length = 258

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 67.2 bits (164), Expect = 9e-13
 Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 5/164 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  LN+    M  +L +  +  E D +   + + G+GR FCAG D+         G 
Sbjct: 14  LNRPDKLNSFTAEMHLELREALERVERD-DARALMLTGAGRGFCAGQDLSERN--PTPGG 70

Query: 109 LEECKDFFRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             +      T Y+  +  L     P V  +NGV  G GA +++     +A     F    
Sbjct: 71  APDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAF 130

Query: 168 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGL 210
             IG  PD+G ++ L  L G      LA+ G KL+     + GL
Sbjct: 131 AKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGL 174

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 14/176 (7%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
            LNRPS  NAL+ +   +  K   + + +PN+  + + G+G  FC+G D+ +L     Q 
Sbjct: 22  NLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQS 81

Query: 108 KL-------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
                    E  +   + L   I  +    KP +A ++G  +GGG  +      R     
Sbjct: 82  SSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED 141

Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLG----EFLALTGAKLNGAEMMACGLAT 212
             F+  E  +    D G    L  LP  +G      LALTG + +G+E    GL +
Sbjct: 142 AFFSVKEVDLAITADLGT---LQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194

Length = 275

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQG 107
           L+RP A NA+   M   L   F+  + D +   V ++ S    FCAG D+      M+  
Sbjct: 10  LDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADL-KERRKMS-- 66

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATP 166
              E + F  +L S    L     P +A++ G  +GGG  +++    R+ CG+  VF  P
Sbjct: 67  -PSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRI-CGEEAVFGLP 124

Query: 167 ETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSV 216
           ET +   P AG +  L  L G    + L  TG ++   E  + GL  +Y V
Sbjct: 125 ETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLV-NYCV 174

Length = 251

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 11/215 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
            NRP   NA+   M A + K  KA + D  I      G+   F AG D+         G 
Sbjct: 21  FNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGT 80

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                 F   +  F+  L    KP V+ ++G+ +G G  + +      A  +++F TP  
Sbjct: 81  -----SFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFV 135

Query: 169 LIGFHPDAGASFYLSHLPGHLGEF--LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 226
            +   P+AG+S     L GH   F  LAL G   +       GL   + + ++   +E E
Sbjct: 136 DLALVPEAGSSLLAPRLMGHQRAFALLAL-GEGFSAEAAQEAGLI--WKIVDE-EAVEAE 191

Query: 227 LGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID 261
             K   +  +     L+   DL+   +  ++ RID
Sbjct: 192 TLKAAEELAAKPPQALQIARDLMRGPREDILARID 226

Length = 251

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 53/257 (20%), Positives = 97/257 (37%), Gaps = 10/257 (3%)

Query: 24  TSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVS 83
           ++ S       ++L E          N P+  NA++ +M   L +   A E+D  I  V 
Sbjct: 1   STMSSISSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVV 60

Query: 84  MKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVT 141
           + G+G +AF +G DI     F       E    +          L  + KP +A + G  
Sbjct: 61  LTGAGEKAFVSGADIS---QFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYC 117

Query: 142 MGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAK 199
           +GGG G+++    R+A   + F  P   +G          L  L  P    +    T  +
Sbjct: 118 IGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLF-YTARR 176

Query: 200 LNGAEMMACGLATHYSVSEKL-PLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIH 258
            + AE +  GL    + ++ L   + +    +  + P  + A     ++L+  +    + 
Sbjct: 177 FDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMA 236

Query: 259 RID-IVDKCFGLDTVEE 274
               +V  CF  +   E
Sbjct: 237 ACQALVAACFDSEDYRE 253

Length = 269

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 4/164 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+ P A NAL+ +M A   +     E DP+I  V + G+G  FCAGG++  L    N+ K
Sbjct: 18  LSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLE--NRAK 75

Query: 109 -LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                      L+ +I  +    KP +A + G   G G  +++     VA     F    
Sbjct: 76  PPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAY 135

Query: 168 TLIGFHPDAGASFYLSH-LPGHLGEFLALTGAKLNGAEMMACGL 210
             +G  PD G S++L+  LP  L   L L G  ++   + A G+
Sbjct: 136 VKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGV 179

Length = 260

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 5/165 (3%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
           +LNRP ALNAL+  M  +L +  K    + +   V ++G+GR F AGGDI  +   ++  
Sbjct: 20  MLNRPEALNALDEPMLKELLQALKEVA-ESSAHIVVLRGNGRGFSAGGDIKMM---LSSN 75

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
              +      T+   +  L T  K  ++ ++G   G G  +++   + +A      A   
Sbjct: 76  DESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNF 135

Query: 168 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLA 211
             IG  PD G  F+L    G +  + +   G KL+  E +  GL 
Sbjct: 136 IGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLI 180

Length = 260

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 7/175 (4%)

Query: 45  RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM 104
            +  LNRP A NALN  +  +L    +A   D +IG   + G+ R F AG D+      M
Sbjct: 13  LLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNE----M 68

Query: 105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
            +  L    +  R        L    KP +A +NG  +G G  +++     +A     F 
Sbjct: 69  AEKDLAATLNDPRPQL--WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFG 126

Query: 165 TPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSE 218
            PE  +G  P AG +  L    G  L   + LTG  +   +    GL +     E
Sbjct: 127 LPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE 181

Length = 255

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 52/190 (27%), Positives = 70/190 (36%), Gaps = 38/190 (20%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  +NAL+  M  +L    K  + D  I  V + G G AFCAG D+ S     +   
Sbjct: 18  LNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKS---VASSPG 74

Query: 109 LEECKDFFRTLYSFIYLLGTHLK------------------PHVAILNGVTMGGGAGVSI 150
                         + LL   L                   P +A L GV  GGG  +++
Sbjct: 75  NA------------VKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIAL 122

Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMAC 208
               R+A   T  +  E   G  PD   +  L  L       E L  T    +  E +  
Sbjct: 123 GADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARE-LTYTARVFSAEEALEL 181

Query: 209 GLATHYSVSE 218
           GL TH  VS+
Sbjct: 182 GLVTH--VSD 189

Length = 262

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 31/161 (19%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS--------- 99
           LNRP  LNA    M  +L + F A + D  +  V + G+GRAFCAG D+ +         
Sbjct: 19  LNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDA 78

Query: 100 ---LYHFMNQGKLEECKDFFR------TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSI 150
                    + + +   D  R      TL  F       LKP +A +NG  +G GA +++
Sbjct: 79  PRTPVEADEEDRADPSDDGVRDGGGRVTLRIF-----DSLKPVIAAVNGPAVGVGATMTL 133

Query: 151 PGTFRVACGKT----VFATPETLIGFHPDAGASFYLSHLPG 187
               R+A        VF       G  P+A +S++L  L G
Sbjct: 134 AMDIRLASTAARFGFVFGR----RGIVPEAASSWFLPRLVG 170

Length = 296

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 16/174 (9%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ-- 106
           LNRP   NA+N    ++L ++F+  + DP +  V + GSG+ F  G D+ ++     Q  
Sbjct: 21  LNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80

Query: 107 -----GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                    + +     L + I  +    KP +A + G  +GGG  +      R A    
Sbjct: 81  KDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADA 140

Query: 162 VFATPETLIGFHPDAGASFYLSHLP-----GHLGEFLALTGAKLNGAEMMACGL 210
            F+  E  +G   D G+   L  LP     GHL E LALTG  ++ AE    GL
Sbjct: 141 KFSVREVDLGMVADVGS---LQRLPRIIGDGHLRE-LALTGRDIDAAEAEKIGL 190

Length = 272

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 14/184 (7%)

Query: 37  LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAW---ENDPNIGFVSMKGSGRAFCA 93
           LVE + ++ +  +NRP A NAL+T M   L  +  AW   +NDP+I    + G+G AFCA
Sbjct: 8   LVEQRGHTLIVTMNRPEARNALSTEM---LRIMVDAWDRVDNDPDIRSCILTGAGGAFCA 64

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH--LKPHVAILNGVTMGGGAGVSIP 151
           G D+ +      +   +  KD          LL      KP +A + G  + GG  + + 
Sbjct: 65  GMDLKAA---TKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEI-LQ 120

Query: 152 GT-FRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACG 209
           GT  RVA     F   E      P  G++  L   +P  +   L LTG  +  AE    G
Sbjct: 121 GTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIG 180

Query: 210 LATH 213
           L  H
Sbjct: 181 LIGH 184

Length = 263

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 59.0 bits (143), Expect = 5e-10
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 31 DLCNQVLVEGKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR 89
             N +LV    N    I +NRP ALNAL   M  +L   FK  + D ++  + + GSGR
Sbjct: 6  VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGR 65

Query: 90 AFCAGGDI 97
          AFC+G D+
Sbjct: 66 AFCSGVDL 73

Length = 265

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 58.2 bits (141), Expect = 9e-10
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 26/206 (12%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSL------ 100
            L+RP A NA++      + ++F  + +DP +    + G+G + F AG D+ +       
Sbjct: 17  TLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAP 75

Query: 101 ---YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVA 157
              +       L E  D                KP +A +NG   GGG  +++   F V 
Sbjct: 76  DADFGPGGFAGLTEIFDLD--------------KPVIAAVNGYAFGGGFELALAADFIVC 121

Query: 158 CGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACGLATHYSV 216
                FA PE  +G  PD+G    L   LP  +   + +TG +++  E +  G+      
Sbjct: 122 ADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVP 181

Query: 217 SEKLPLIEEELGKLVTDDPSVIEACL 242
             +L     EL + + +   +  A L
Sbjct: 182 QAELMDRARELAQQLVNSAPLAIAAL 207

Length = 261

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 58.4 bits (142), Expect = 9e-10
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  LN+    M  +L +     E D     + + G+GR FCAG D+         G 
Sbjct: 19  LNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADR-DVTPGGA 76

Query: 109 LEECKDFFRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
           + +  +   T Y+  +  L     P +A +NGV  G GA +++     +A     F    
Sbjct: 77  MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAF 136

Query: 168 TLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 210
             IG  PD+G +++L  L G    LG  LAL G KL+  +    GL
Sbjct: 137 VKIGLVPDSGGTWFLPRLVGMARALG--LALLGEKLSAEQAEQWGL 180

Length = 262

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 14/162 (8%)

Query: 43  NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYH 102
           NS++  L++      L       +N+L   W N+     V + G   +F AG DI  +  
Sbjct: 32  NSKVNTLSK-----ELFAEFKEVMNEL---WTNEAIKSAVLISGKPGSFVAGADIQMI-- 81

Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG--K 160
                  +E     +        +    KP VA ++G  +GGG  +++   +R+A    K
Sbjct: 82  -AACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRK 140

Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLN 201
           T+   PE ++G  P AG +  L  L G      + LTG K+ 
Sbjct: 141 TLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIR 182

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 32/210 (15%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LN P A NAL++ +  +L++L    E D N+  V + G GR F AG DI     F +  +
Sbjct: 17  LNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADI---KEFTSVTE 72

Query: 109 LEECKDFFRTLYSFIYLLGTHL--------KPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
            E+         + +  LG           KP +A ++G  +GGG  +++    R A   
Sbjct: 73  AEQ--------ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES 124

Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATHYSV 216
                PE  +G  P    +     LP ++G+  A    LT   + GAE +  GL      
Sbjct: 125 AKLGLPELNLGLIPGFAGT---QRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNG-VF 180

Query: 217 SEKLPLIEEEL---GKLVTDDPSVIEACLE 243
            E+  L+++      K+    P+   A LE
Sbjct: 181 PEE-TLLDDAKKLAKKIAGKSPATTRAVLE 209

Length = 257

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 1/182 (0%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   N  N  M  ++ +  +  E DP++ F+ +  +G+ F  GGD+V +   +++  
Sbjct: 17  LNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDD 76

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           ++        +    + +    KP +  ++G   G  A +++   F +A  KT F     
Sbjct: 77  VQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV 136

Query: 169 LIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227
            +G  PDAG  F L+   G +    LA+TG  L   + +  G     + SEKL    E+L
Sbjct: 137 GVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQL 196

Query: 228 GK 229
            K
Sbjct: 197 LK 198

Length = 255

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 24/177 (13%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQ 106
             NRP+A NA+   M   L ++ +A   DP+I  V ++G+G +AF AG DI     F   
Sbjct: 22  TFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAF--- 78

Query: 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166
              E+   + R +   +  L     P +A + G  +GGGA ++     R+       ATP
Sbjct: 79  STAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRI-------ATP 131

Query: 167 ETLIGFHPDA-------GASFYLSHLPGHLG----EFLALTGAKLNGAEMMACGLAT 212
               GF P A         S   + L   LG    + +  T   L   E +A GL  
Sbjct: 132 SARFGF-PIARTLGNCLSMSNL-ARLVALLGAARVKDMLFTARLLEAEEALAAGLVN 186

Length = 262

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 56.0 bits (135), Expect = 6e-09
 Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 16/201 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ-- 106
           L+R    NA N  M  +L       ++D ++ F+ ++G GR F AG D+     +M Q  
Sbjct: 21  LSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLA----WMQQSA 76

Query: 107 -----GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                  L++     R L   +Y L     P +A++ G   GG  G+       +     
Sbjct: 77  DLDYNTNLDDA----RELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDA 132

Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGL-ATHYSVSEKL 220
            F   E  IG  P   + F +  +        ALT  + +G      GL A  Y  +E  
Sbjct: 133 QFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELE 192

Query: 221 PLIEEELGKLVTDDPSVIEAC 241
             +E  +  L+ + P  + A 
Sbjct: 193 AQVEAWIANLLLNSPQALRAS 213

Length = 265

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 12/199 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NA++  +  ++  +  A E D + G + + G+G A+ AG D+   +   +   
Sbjct: 23  LNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQP 82

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
               +   R  Y +   L  + KP +A++NG   GGG    +     +A  +  F   E 
Sbjct: 83  EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEI 142

Query: 169 LIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATHYSVSEKLPLIE--- 224
             G  P  G S  ++   GH    +  +TG    G +    GL     V+E +PL +   
Sbjct: 143 NWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGL-----VNESVPLAQLRA 197

Query: 225 ---EELGKLVTDDPSVIEA 240
              E   KL+  +P V+ A
Sbjct: 198 RTRELAAKLLEKNPVVLRA 216

Length = 275

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 31  DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRA 90
            + +Q+ +E   +  +  L+ P  +NAL+  +  +L  +F      P++  V + G+G+ 
Sbjct: 1   MMMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKV 59

Query: 91  FCAGGDIVSLYHFMNQGKLEECKDFF---RTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 147
           FCAG D+           ++   D     R      + +    KP +A +NG  +G G G
Sbjct: 60  FCAGADLKG-----RPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLG 114

Query: 148 VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMA 207
           +       VA    VF  PE  +G     G    +      L   + LTG ++  AE+  
Sbjct: 115 LVASCDIIVASENAVFGLPEIDVGLA--GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYR 172

Query: 208 CGL 210
            G+
Sbjct: 173 RGV 175

Length = 257

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 34/205 (16%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYH-----F 103
           LNRP  LN +   M  ++       E D +I  + ++G+GRAF  G D    +       
Sbjct: 20  LNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAM 79

Query: 104 MNQGKLEECKDFFRT-------LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRV 156
           M  G+ +  KDF             F+ +     KP +A ++G  +GG +  ++      
Sbjct: 80  MTDGRWDPGKDFAMVTARETGPTQKFMAIWRAS-KPVIAQVHGWCVGGASDYAL------ 132

Query: 157 ACGKTVFATPETLIGFHPDA---GA---SFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 210
            C   V A+ + +IG  P +   GA     +L  L     ++ +LTG  L G +     L
Sbjct: 133 -CADIVIASDDAVIG-TPYSRMWGAYLTGMWLYRLSLAKVKWHSLTGRPLTGVQAAEAEL 190

Query: 211 ATHYSVSEKLPL--IEEELGKLVTD 233
                ++E +P   +E  + ++ T+
Sbjct: 191 -----INEAVPFERLEARVAEVATE 210

Length = 298

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 20/183 (10%)

Query: 49  LNRPSALNALNTN-MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLY--HFMN 105
           +NRP   NAL+ N     L     A   D ++  V + G+G AF +GG++  +       
Sbjct: 18  MNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAF 77

Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLK-PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
            G   + +  +R     I L   +L+ P +A +NG  +G G  ++     R+A     FA
Sbjct: 78  GGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFA 137

Query: 165 TPETLIGFHP-DAGASFYLSHLPGHLG-----EFLALTGAKLNGAEMMACGLATHYSVSE 218
                +G  P D GA      LP  +G     E +A TG  ++ A  +  GL     VS 
Sbjct: 138 ESFVKLGLIPGDGGAWL----LPRIIGMARAAE-MAFTGDAIDAATALEWGL-----VSR 187

Query: 219 KLP 221
            +P
Sbjct: 188 VVP 190

Length = 266

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 56/198 (28%), Positives = 77/198 (38%), Gaps = 26/198 (13%)

Query: 25  SSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSM 84
            S V+ +L   V   G        LNRP+  NALN  + A L   F        +  V +
Sbjct: 1   PSLVSYELDGGVATIG--------LNRPAKRNALNDGLIAALRAAFARLPEG--VRAVVL 50

Query: 85  KGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL----YSFIYLLGTHLKPHVAILNGV 140
            G G  FCAG D+  L        +   + + R      Y  +        P +A L+G 
Sbjct: 51  HGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRV--------PVIAALHGA 102

Query: 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG--HLGEFLALTGA 198
            +GGG  ++     RVA   T FA PE   G     G S  +  L G   + + + LTG 
Sbjct: 103 VVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD-MMLTGR 161

Query: 199 KLNGAEMMACGLATHYSV 216
             +  E    GLA  Y V
Sbjct: 162 VYDAQEGERLGLA-QYLV 178

Length = 255

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN--- 105
           LNRP   NAL+  M A+L    +    D  +  V + G+G++FCAGGD+  +   M    
Sbjct: 20  LNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADR 79

Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 147
             ++EE     R L   +  L    KP +  + G   GGG G
Sbjct: 80  ATRIEEA----RRLAMMLKALNDLPKPLIGRIQGQAFGGGVG 117

Length = 262

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 51/181 (28%), Positives = 73/181 (40%), Gaps = 17/181 (9%)

Query: 36  VLVEGKANSRMAILNRPSALNALN----TNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF 91
           VLVE +    +  +NRP A NA+N      + A L++L    + DP++    + G+G  F
Sbjct: 5   VLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDEL----DADPDLSVGILTGAGGTF 60

Query: 92  CAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151
           CAG D   L  F  +G+        R             KP +A + G  + GG  +++ 
Sbjct: 61  CAGMD---LKAFA-RGERPSIPG--RGFGGLT--ERPPRKPLIAAVEGYALAGGFELALA 112

Query: 152 GTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPGHLGEFLALTGAKLNGAEMMACGL 210
               VA     F  PE   G     G    L   +P H+   LALTG  L        GL
Sbjct: 113 CDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGL 172

Query: 211 A 211
            
Sbjct: 173 V 173

Length = 254

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGD 96
          LNRP A NAL+  M A L     A   DP++  V +  +G+AFCAG D
Sbjct: 26 LNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHD 73

Length = 266

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 20/174 (11%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN-IGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
           L+ P  +NA++ +M   L +   A E+    +  + + G+GR FC G ++        QG
Sbjct: 19  LDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANL--------QG 70

Query: 108 KLEECKDF---------FRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVA 157
           +    ++            T Y  F+  L     P V  +NG   G G   ++ G   + 
Sbjct: 71  RGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILC 130

Query: 158 CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGL 210
                F      IG  PD G+++ L  L G      L+L G KL     +  GL
Sbjct: 131 ARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGL 184

Length = 266

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 10/168 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   N L     A+L  LF+      ++  V + G+G  FC+GGD+  +   + +  
Sbjct: 32  LNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMD 91

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           + E   F R     +  +    +P +A ++GV  G GA +++    R+       A   T
Sbjct: 92  MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFT 151

Query: 169 LIGFH-PDAGASFYLSHLP-----GHLGEFLALTGAKLNGAEMMACGL 210
            +G    D GA   L  LP     G   E L  TG  ++  E    G 
Sbjct: 152 RVGLAGADMGAC-AL--LPRIIGQGRASELL-YTGRSMSAEEGERWGF 195

Length = 277

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGD--IVSLYHFM 104
            +NRP   NA       ++ +       DP+IG V + G+G +AFC+GGD  +   Y ++
Sbjct: 17  TINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYI 76

Query: 105 NQGKLEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGG 145
           +   +      D  R + +         KP +A++NG  +GGG
Sbjct: 77  DDSGVHRLNVLDVQRQIRTCP-------KPVIAMVNGYAIGGG 112

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 37  LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGG 95
           +V G  N+ + IL+ P   N+  T+M   +   F+   +D ++  V     G +AFC GG
Sbjct: 32  VVPGLYNAWI-ILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGG 90

Query: 96  DIVSL--YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           +      Y+  N  +  +    F  + S I  LG   KP +  +NG+ +GGG  + +   
Sbjct: 91  NTKEYAEYYAGNPQEYRQYMRLFNDMVSAI--LGCD-KPVICRVNGMRIGGGQEIGMAAD 147

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYL 182
           F +A     F       G  P  GA+ +L
Sbjct: 148 FTIAQDLANFGQAGPKHGSAPIGGATDFL 176

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 59/212 (27%), Positives = 79/212 (37%), Gaps = 37/212 (17%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
            ++ P  +NAL +     L     A   DP+   V ++  GR F AG DI  L       
Sbjct: 16  TVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFT 74

Query: 108 KL----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
            L      C   FR +Y           P +A ++G  +GGG G+       VA     F
Sbjct: 75  ALIDANRGCFAAFRAVYE-------CAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATF 127

Query: 164 ATPETLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK 219
             PE       D GA    +HL    P HL   L  T A +  AE+   G     SV E 
Sbjct: 128 GLPEV------DRGALGAATHLQRLVPQHLMRALFFTAATITAAELHHFG-----SVEEV 176

Query: 220 LPLIEEEL--------GKLVTDDPSVIEACLE 243
           +P   ++L         K+   D  VI A  E
Sbjct: 177 VP--RDQLDEAALEVARKIAAKDTRVIRAAKE 206

Length = 249

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDI---VSLYHFM 104
             + P ++N  +    A L++   A +   ++  V +     AF  G DI   + L+  +
Sbjct: 21  KFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLF-AL 79

Query: 105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
              +L +   F  ++++ +  L     P VA +NG+ +GGG    +   FR+A       
Sbjct: 80  PDAELIQWLLFANSIFNKLEDLPV---PTVAAINGIALGGGCECVLATDFRIADDTAKIG 136

Query: 165 TPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204
            PET +G  P  G +  L  + G       +   K N AE
Sbjct: 137 LPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAE 176

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 47/197 (23%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
            LNRP   NA+  +   +L    +  + DP +  + + G+G+ FCAG D+ +     + G
Sbjct: 24  TLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG 83

Query: 108 KLEECKDFFRTLYS----------------------FIYLLGTHLKPHVAILNGVTMGGG 145
                    R   +                      F+ L   H KP VA ++G  + GG
Sbjct: 84  GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAH-KPTVAKVHGYCVAGG 142

Query: 146 AGVSIPGTFRVACGKTVFATPETLIGFH-------PDAGASFYLSHLPGHLG----EFLA 194
             +++           V A  +  IG+        P  G   Y       LG    + L 
Sbjct: 143 TDIAL-------HCDQVIAADDAKIGYPPTRVWGVPATGMWAY------RLGPQRAKRLL 189

Query: 195 LTGAKLNGAEMMACGLA 211
            TG  + GA+    GLA
Sbjct: 190 FTGDCITGAQAAEWGLA 206

Length = 302

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 48/167 (28%), Positives = 65/167 (38%), Gaps = 7/167 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+ P   NAL+  + A+L+   +A   DP +  V +  +G  FCAG D   L      G 
Sbjct: 21  LDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGAD---LSEAGGGGG 77

Query: 109 LEECKDFFRTLYSFIYLLGTHL---KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165
                   R       LL   +   KP +A ++G    GG G+       VA  ++ FA 
Sbjct: 78  DPYDAAVARAR-EMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFAL 136

Query: 166 PETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLAT 212
            E  IG  P   +   L  L         LTG K   AE    GL T
Sbjct: 137 TEARIGVAPAIISLTLLPRLSPRAAARYYLTGEKFGAAEAARIGLVT 183

Length = 260

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGD 96
          +LN P ALNA +  M  +L  +++  + DP++  V ++G G+AF AGGD
Sbjct: 26 VLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGD 74

Length = 268

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 45/188 (23%), Positives = 67/188 (35%), Gaps = 29/188 (15%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS------LYH 102
           LNRP A NA N  M  +L+  F+  E D  +  + + G+G+ F AG D+ S         
Sbjct: 19  LNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDP 78

Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHL------------KPHVAILNGVTMGGGAGVSI 150
             +Q          +      Y     +            KP +A + G  + GG  ++ 
Sbjct: 79  GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAW 138

Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG-----EFLALTGAKLNGAEM 205
                VA     F+ P   +G         Y +H P  LG     E L  TG +L   E 
Sbjct: 139 VCDLIVASDDAFFSDPVVRMG----IPGVEYFAH-PWELGPRKAKELL-FTGDRLTADEA 192

Query: 206 MACGLATH 213
              G+   
Sbjct: 193 HRLGMVNR 200

Length = 288

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  +N++  ++   L +       D ++  V + G+GR F +G D  S     +   
Sbjct: 25  LNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEG 84

Query: 109 LEECKDFFRT---LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
           L       R+   L   I  L    +P +A +NG  +GGG  +++    RVA     F
Sbjct: 85  LTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYF 142

Length = 276

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 22/63 (34%), Positives = 29/63 (46%)

Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
            V VE        ILNRP   NA++    A L   F+A++ D       + G+G  FCA
Sbjct: 3  MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCA 62

Query: 94 GGD 96
          G D
Sbjct: 63 GAD 65

Length = 254

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 18/123 (14%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQ 106
           ++NRP+ +NA       +L    K    D  IG + + G+G +AFC GGD  S +     
Sbjct: 16  MINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD-QSTHDGGYD 74

Query: 107 GK------LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
           G+      +EE     R +           KP +A + G  +GGG  +       +A  K
Sbjct: 75  GRGTIGLPMEELHSAIRDV----------PKPVIARVQGYAIGGGNVLVTICDLTIASEK 124

Query: 161 TVF 163
             F
Sbjct: 125 AQF 127

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
             TD +  + + EG A  ++ I NRP   NA       +L + F    +D ++G + + G
Sbjct: 63  EFTDIIYEKAVGEGIA--KITI-NRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTG 119

Query: 87  SG-RAFCAGGD 96
            G +AFC+GGD
Sbjct: 120 KGTKAFCSGGD 130

Length = 327

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 8/164 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L RP A N ++  M A L+        D  +  V +   G  F  G  +        +  
Sbjct: 16  LARPKA-NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASV-------AEHM 67

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            ++C     +L+  +  +     P +  + G  +GGG  V+  G    A        PE 
Sbjct: 68  PDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEI 127

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLAT 212
           ++G    A +      +     E L  +G  ++GAE    GLA 
Sbjct: 128 VLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLAN 171

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)

Query: 55  LNALNTNMGAKLNKLFKAWENDPNI-GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK 113
           +N L      +++++    + D +I G V + G    F AG DI  L      G+ +   
Sbjct: 23  MNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALA 82

Query: 114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC--GKTVFATPETLIG 171
              + L++ +  L   +   VA ++G  +GGG  +++    RV     KTV   PE  +G
Sbjct: 83  QQGQVLFAELEALPIPV---VAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLG 139

Query: 172 FHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGL 210
             P +G +  L  L G      + LTG +L   + +  GL
Sbjct: 140 LLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGL 179

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.82
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.8
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.66
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.56
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.55
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	99.54
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.5
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.5
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.48
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.41
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.3
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.29
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.85
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.81
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.72
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.68
PRK10949	618	protease 4; Provisional	98.66
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.55
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.51
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.47
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.44
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.43
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.42
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.36
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.32
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.32
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.32
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.28
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	98.27
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.13
PRK11778	330	putative inner membrane peptidase; Provisional	98.13
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	98.13
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	98.12
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	98.12
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	98.11
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	98.07
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.89
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.89
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.88
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.83
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.74
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.68
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.61
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.49
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	97.38
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.38
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.29
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	97.15
PRK10949	618	protease 4; Provisional	97.11
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	96.86
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.55
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	96.36
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.17
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	95.43
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	94.44
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	94.32
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	92.64
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	90.75

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2.7e-62  Score=471.40  Aligned_cols=324  Identities=69%  Similarity=1.130  Sum_probs=284.0

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      .+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++............
T Consensus        36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~  115 (401)
T PLN02157         36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI  115 (401)
T ss_pred             CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            56688999999999999999999999999999999999999999999999999999999999999988643211112223


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF  192 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~  192 (357)
                      ..++...+.+.+.|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++
T Consensus       116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~  195 (401)
T PLN02157        116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY  195 (401)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence            44555556677889999999999999999999999999999999999999999999999999999999999999966999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCH
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (357)
                      |++||++++|+||+++|||+++||++++.+..+.+.++...+|.++...|+.+.....+...........+..||+.++.
T Consensus       196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~  275 (401)
T PLN02157        196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV  275 (401)
T ss_pred             HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence            99999999999999999999999999997666666788888999999999988755333334455557889999999999


Q ss_pred             HHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       273 e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                      +++++.|+....+..++|++++++.|.+.||+|+++|.++++++...+++++++.|+++..+++....++||.|||||.|
T Consensus       276 ~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~L  355 (401)
T PLN02157        276 EEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARL  355 (401)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            99999997543334568999999999999999999999999999999999999999999988874112589999999999


Q ss_pred             ccCC
Q 018384          353 LNKH  356 (357)
Q Consensus       353 ~~r~  356 (357)
                      +||+
T Consensus       356 iDKd  359 (401)
T PLN02157        356 IDKD  359 (401)
T ss_pred             cCCC
Confidence            9986

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=4.4e-62  Score=469.65  Aligned_cols=325  Identities=66%  Similarity=1.136  Sum_probs=286.7

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ..+.|.++..+++++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++.+...........
T Consensus        40 ~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~  119 (407)
T PLN02851         40 LQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEE  119 (407)
T ss_pred             CCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999865322222244


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHH
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE  191 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~  191 (357)
                      ...++...+.+.+.|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+.
T Consensus       120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~  199 (407)
T PLN02851        120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGE  199 (407)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHH
Confidence            55667778888889999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|++||++++|+||+++||+++++|++++.++.+.+.++...++..+....+.|.....+...........|++||+.++
T Consensus       200 ~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~s  279 (407)
T PLN02851        200 YLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDT  279 (407)
T ss_pred             HHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999777777777777778888888888864322222344555789999999999


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                      +++|++.|+.......++|++++++.|.+.||+|+++|+++++++...+++++++.|+++..+++....++||.|||||.
T Consensus       280 v~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~  359 (407)
T PLN02851        280 VEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRAR  359 (407)
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            99999999975433356899999999999999999999999999999999999999999998886211279999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      |+||+
T Consensus       360 LIDKd  364 (407)
T PLN02851        360 LVDKD  364 (407)
T ss_pred             hcCCC
Confidence            99986

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=1.7e-61  Score=464.50  Aligned_cols=322  Identities=48%  Similarity=0.815  Sum_probs=281.5

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHH
Q 018384           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (357)
Q Consensus        35 ~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (357)
                      .|.++.+++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++......+.......
T Consensus        10 ~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~   89 (381)
T PLN02988         10 QVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN   89 (381)
T ss_pred             ceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence            57888899999999999999999999999999999999999999999999999999999999998753221111122233


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHH
Q 018384          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA  194 (357)
Q Consensus       115 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~  194 (357)
                      ++...+.+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+.+|+
T Consensus        90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~l~  169 (381)
T PLN02988         90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVG  169 (381)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHHHH
Confidence            44444556778899999999999999999999999999999999999999999999999999999999999998789999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  274 (357)
                      +||++++|+||+++|||+++||++++.+....++++...+|..+...++.+.................|++||+.+++++
T Consensus       170 LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~  249 (381)
T PLN02988        170 LTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEE  249 (381)
T ss_pred             HcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999988888888888889999999998865432122334445889999999999999


Q ss_pred             HHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018384          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  354 (357)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~  354 (357)
                      |++.|+....+...+|++++++.|.+.||+|+++|+++++++...++.++++.|+++..+++....++||.|||||.|+|
T Consensus       250 i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiD  329 (381)
T PLN02988        250 IISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVD  329 (381)
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcC
Confidence            99999974322356899999999999999999999999999999999999999999999988511148999999999999


Q ss_pred             CC
Q 018384          355 KH  356 (357)
Q Consensus       355 r~  356 (357)
                      |+
T Consensus       330 Kd  331 (381)
T PLN02988        330 KD  331 (381)
T ss_pred             CC
Confidence            86

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.9e-59  Score=452.23  Aligned_cols=324  Identities=44%  Similarity=0.748  Sum_probs=278.5

Q ss_pred             ccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCCh
Q 018384           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        30 ~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      ++.++.+.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++......  .
T Consensus         7 ~~~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~--~   84 (379)
T PLN02874          7 NPAEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES--D   84 (379)
T ss_pred             CCCCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc--c
Confidence            34456688999999999999999999999999999999999999999999999999999999999999987542111  1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH
Q 018384          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (357)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (357)
                      .....+....+.++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..
T Consensus        85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~  164 (379)
T PLN02874         85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHL  164 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHH
Confidence            12223334445567789999999999999999999999999999999999999999999999999999999999999966


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +.+|++||++++|+||+++|||+++||++++.+....+.++...+...++..++.+.................|.+||+.
T Consensus       165 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  244 (379)
T PLN02874        165 GEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSK  244 (379)
T ss_pred             HHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCC
Confidence            99999999999999999999999999999888766666666666777788888777654333344555568899999999


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                      ++++++++.+++..++..++|+.+++++|+++||.|++.+|++++.+...+++++++.|.......+....++||+||++
T Consensus       245 ~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~  324 (379)
T PLN02874        245 DTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIR  324 (379)
T ss_pred             CCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccc
Confidence            99999999999877766789999999999999999999999999998888999999999888766653223799999999


Q ss_pred             heeccC
Q 018384          350 FQILNK  355 (357)
Q Consensus       350 afl~~r  355 (357)
                      ||+++|
T Consensus       325 AflidK  330 (379)
T PLN02874        325 ALVIDK  330 (379)
T ss_pred             eEEEcC
Confidence            998433

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=2.6e-57  Score=432.33  Aligned_cols=312  Identities=38%  Similarity=0.652  Sum_probs=268.6

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      +.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++............
T Consensus         3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (342)
T PRK05617          3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA   82 (342)
T ss_pred             ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence            3588899999999999999999999999999999999999999999999999999 999999999987542211111111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF  192 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~  192 (357)
                      ..++.....++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++
T Consensus        83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~  162 (342)
T PRK05617         83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY  162 (342)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence            13444445678889999999999999999999999999999999999999999999999999999999999998844999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhh-cCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLV-TDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      |++||+.++|+||+++|||++++|++++.+..+.+.++- ..+...+.+.+..+....  ....+......|++||+..+
T Consensus       163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~  240 (342)
T PRK05617        163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPA--PASELAAQRAWIDECFAGDT  240 (342)
T ss_pred             HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCC--CcchhHHHHHHHHHHhCCCC
Confidence            999999999999999999999999988876544443222 334455666666654442  22367778899999999999


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                      +++|++.|++.    .++|+.+++++|+++||.+++.+|+++++....+++++++.|...+...+.   ++|++||+++|
T Consensus       241 ~~~~~~~l~~~----~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~egv~af  313 (342)
T PRK05617        241 VEDIIAALEAD----GGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLR---SPDFVEGVRAV  313 (342)
T ss_pred             HHHHHHHHHhc----cHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---CCchhhccceE
Confidence            99999999987    458999999999999999999999999998888999999999999999987   99999999999


Q ss_pred             e-cc
Q 018384          352 I-LN  354 (357)
Q Consensus       352 l-~~  354 (357)
                      + ++
T Consensus       314 l~ek  317 (342)
T PRK05617        314 LIDK  317 (342)
T ss_pred             EEcC
Confidence            7 54

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-56  Score=408.16  Aligned_cols=327  Identities=50%  Similarity=0.809  Sum_probs=301.8

Q ss_pred             CCcccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhc
Q 018384           27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMN  105 (357)
Q Consensus        27 ~~~~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~  105 (357)
                      ....+..+.|.++.++...+||||||+.+||||.+|...+.-.|..++.++.+++||+.|.| ++||+|+|+........
T Consensus        31 ~~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~  110 (401)
T KOG1684|consen   31 SVSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIK  110 (401)
T ss_pred             ccccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhh
Confidence            33445567899999999999999999999999999999999999999999999999999995 99999999998877777


Q ss_pred             cCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhc
Q 018384          106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  185 (357)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~  185 (357)
                      ++.......|+...+.+...|.++.||.||.+||..+|||++|+..--||||+|++.|.+||..+|++|+.|++++++|+
T Consensus       111 d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrl  190 (401)
T KOG1684|consen  111 DKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRL  190 (401)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhC
Confidence            77777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCH-HHHHHHHHHhhccCCCChhhHHHHHHHHH
Q 018384          186 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDP-SVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (357)
Q Consensus       186 ~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (357)
                      +|..+.||.|||.++++.||+..||.+|.||.+++...++++......+| ..+.+..+.|.....+.........+.|+
T Consensus       191 pg~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~  270 (401)
T KOG1684|consen  191 PGYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVIN  270 (401)
T ss_pred             ccHHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHH
Confidence            99779999999999999999999999999999999998888875555555 78899999999887766666777889999


Q ss_pred             HHcCCCCHHHHHHHHhccc-CCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 018384          265 KCFGLDTVEEIIDSLESEA-SLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  343 (357)
Q Consensus       265 ~~~~~~~~e~i~~~l~~~~-~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d  343 (357)
                      .||+++++|+|++.|.+.. .....+||+++++.|.+.||+|+++|.++++++..+++++++.+|+++..+.+.   +.|
T Consensus       271 ~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~---~~D  347 (401)
T KOG1684|consen  271 KCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLM---RGD  347 (401)
T ss_pred             HhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---ccc
Confidence            9999999999999875432 445669999999999999999999999999999999999999999999999887   999


Q ss_pred             hhhhhhheeccCC
Q 018384          344 FYEVSNFQILNKH  356 (357)
Q Consensus       344 ~~egi~afl~~r~  356 (357)
                      |.||+||.|+||+
T Consensus       348 F~EGvRA~LIDKd  360 (401)
T KOG1684|consen  348 FCEGVRAVLIDKD  360 (401)
T ss_pred             hhhhhhheeecCC
Confidence            9999999999996

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.8e-55  Score=403.58  Aligned_cols=253  Identities=28%  Similarity=0.370  Sum_probs=227.5

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      +.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++............
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (260)
T PRK05980          3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL   82 (260)
T ss_pred             ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence            4688999999999999999999999999999999999999999999999999999 799999999987542111111223


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  162 (260)
T PRK05980         83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL  162 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence            34555556788889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|+++|++++|+||+++|||++++|++++.+.+.                                              
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  196 (260)
T PRK05980        163 ELLLTGDAFSAERALEIGLVNAVVPHEELLPAAR----------------------------------------------  196 (260)
T ss_pred             HHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999887765433                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                           +++++|++.+|.++..+|++++.....+++++++.|...+...+.   ++|++||+++|
T Consensus       197 ---------------------~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af  252 (260)
T PRK05980        197 ---------------------ALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAG---SADLREGLAAW  252 (260)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence                                 348889999999999999999998888999999999999999887   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      +++|+
T Consensus       253 ~~kr~  257 (260)
T PRK05980        253 IERRR  257 (260)
T ss_pred             hccCC
Confidence            99986

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=1.9e-54  Score=402.06  Aligned_cols=255  Identities=22%  Similarity=0.287  Sum_probs=223.5

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      .++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++...........
T Consensus         6 ~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   85 (275)
T PRK09120          6 RWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEIL   85 (275)
T ss_pred             ccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHH
Confidence            46779999999999999999999999999999999999999999999999999999999999999998743211111111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...+....+.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  165 (275)
T PRK09120         86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA  165 (275)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence            222333456678889999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|+++|++++|+||+++|||++|||++++++.+.+                                            
T Consensus       166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~--------------------------------------------  201 (275)
T PRK09120        166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRE--------------------------------------------  201 (275)
T ss_pred             HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999888754443                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHH--HHHhhhcCCCC-Chhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRM--SLQGVSRLISG-DFYEV  347 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~--~~~~~~~~~s~-d~~eg  347 (357)
                                             ++++|+..||.+++.+|++++.....+++++++.|...  +...+.   ++ |++||
T Consensus       202 -----------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~d~~eg  255 (275)
T PRK09120        202 -----------------------LAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLD---PEGGREEG  255 (275)
T ss_pred             -----------------------HHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC---CHHHHHHH
Confidence                                   48999999999999999999998888999999887654  333454   77 89999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +++|+++|.
T Consensus       256 ~~afl~kr~  264 (275)
T PRK09120        256 LKQFLDDKS  264 (275)
T ss_pred             HHHHHhccc
Confidence            999999885

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.1e-54  Score=396.13  Aligned_cols=250  Identities=20%  Similarity=0.253  Sum_probs=225.0

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      |+..+.++++++|++||||||++ |++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++...    +..
T Consensus         1 ~~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~----~~~   75 (258)
T PRK09076          1 MMIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG----DKA   75 (258)
T ss_pred             CceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc----Chh
Confidence            34568899999999999999985 999999999999999999999999999999999 799999999987531    112


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      ....+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~  155 (258)
T PRK09076         76 VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGW  155 (258)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            2223344456678889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|+++|++++|+||+++|||++|+|++++.+.+.                                            
T Consensus       156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  191 (258)
T PRK09076        156 AKRMILCGERVDAATALRIGLVEEVVEKGEAREAAL--------------------------------------------  191 (258)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHH--------------------------------------------
Confidence            999999999999999999999999999887764333                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                             +++++|+.++|.+++.+|++++.....++++.++.|...+...+.   ++|++||++
T Consensus       192 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~  245 (258)
T PRK09076        192 -----------------------ALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFD---TEDQREGVN  245 (258)
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CchHHHHHH
Confidence                                   348999999999999999999988888899999999999988887   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      +|+++|+
T Consensus       246 af~~kr~  252 (258)
T PRK09076        246 AFLEKRA  252 (258)
T ss_pred             HHhcCCC
Confidence            9999985

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-54  Score=395.75  Aligned_cols=247  Identities=25%  Similarity=0.229  Sum_probs=222.6

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      +.|.++++++|++||||||++.|+||.+|+.+|.+++++++  +++++|||||.|++||+|+|++++....    .....
T Consensus         2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~----~~~~~   75 (255)
T PRK08150          2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERD----AGEGM   75 (255)
T ss_pred             ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhcc----chhHH
Confidence            56889999999999999999999999999999999999987  7899999999999999999999875321    11122


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHH
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (357)
                      .+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~  155 (255)
T PRK08150         76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD  155 (255)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            3344556778889999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCH
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (357)
                      |+++|++++|+||+++||||+++|++++.+.+.                                               
T Consensus       156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------------  188 (255)
T PRK08150        156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAM-----------------------------------------------  188 (255)
T ss_pred             HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999888765443                                               


Q ss_pred             HHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       273 e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                                          +++++|+.+||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|+
T Consensus       189 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~af~  245 (255)
T PRK08150        189 --------------------ELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQS---APEAKERLRAFL  245 (255)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh
Confidence                                348999999999999999999988888899999999988877776   999999999999


Q ss_pred             ccCC
Q 018384          353 LNKH  356 (357)
Q Consensus       353 ~~r~  356 (357)
                      ++|+
T Consensus       246 ~kr~  249 (255)
T PRK08150        246 EKKA  249 (255)
T ss_pred             ccCC
Confidence            9885

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-54  Score=400.16  Aligned_cols=253  Identities=23%  Similarity=0.283  Sum_probs=226.2

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhc-------c
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-------Q  106 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~-------~  106 (357)
                      +.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|.|++++.....       .
T Consensus         6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~   85 (272)
T PRK06142          6 ESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLA   85 (272)
T ss_pred             ceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccc
Confidence            568999999999999999999999999999999999999999999999999999999999999998754210       0


Q ss_pred             CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcC
Q 018384          107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (357)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (357)
                      ........+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~  165 (272)
T PRK06142         86 RPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRII  165 (272)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHh
Confidence            01122333444566788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHH
Q 018384          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (357)
Q Consensus       187 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (357)
                      |.. +++|+++|++++|+||+++|||++++|+ +++.+.+.                                       
T Consensus       166 G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~---------------------------------------  206 (272)
T PRK06142        166 GDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAH---------------------------------------  206 (272)
T ss_pred             CHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHH---------------------------------------
Confidence            999 9999999999999999999999999986 66654333                                       


Q ss_pred             HHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 018384          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  344 (357)
Q Consensus       265 ~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~  344 (357)
                                                  +++++|++.||.+++.+|++++.....+++++++.|...+...+.   ++|+
T Consensus       207 ----------------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~---~~d~  255 (272)
T PRK06142        207 ----------------------------ATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLP---SKDL  255 (272)
T ss_pred             ----------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CccH
Confidence                                        238899999999999999999988888999999999999988887   9999


Q ss_pred             hhhhhheeccCC
Q 018384          345 YEVSNFQILNKH  356 (357)
Q Consensus       345 ~egi~afl~~r~  356 (357)
                      +||+++|+++|+
T Consensus       256 ~egv~af~~kr~  267 (272)
T PRK06142        256 TEAIAAHMEKRP  267 (272)
T ss_pred             HHHHHHHhcCCC
Confidence            999999999985

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-54  Score=396.56  Aligned_cols=253  Identities=23%  Similarity=0.350  Sum_probs=227.6

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      +++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.............
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   81 (255)
T PRK07260          2 EHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLV   81 (255)
T ss_pred             CceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999875432112222223


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHH
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (357)
                      .+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~  161 (255)
T PRK07260         82 KIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATH  161 (255)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHH
Confidence            3444556788899999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCH
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (357)
                      |+++|++++|+||+++|||++++|++++.+.+..                                              
T Consensus       162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~----------------------------------------------  195 (255)
T PRK07260        162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQ----------------------------------------------  195 (255)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999998887654443                                              


Q ss_pred             HHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       273 e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                                           ++++|++.+|.+++.+|+.++.....+++++++.|...+...+.   ++|++||+++|+
T Consensus       196 ---------------------~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~  251 (255)
T PRK07260        196 ---------------------LLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAF---KEDFKEGVRAFS  251 (255)
T ss_pred             ---------------------HHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence                                 38999999999999999999998888999999999999888887   999999999999


Q ss_pred             ccCC
Q 018384          353 LNKH  356 (357)
Q Consensus       353 ~~r~  356 (357)
                      ++|+
T Consensus       252 ~kr~  255 (255)
T PRK07260        252 ERRR  255 (255)
T ss_pred             hcCC
Confidence            9985

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.9e-54  Score=396.11  Aligned_cols=247  Identities=25%  Similarity=0.330  Sum_probs=223.2

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      +.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++...    ..  ..
T Consensus         4 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~----~~--~~   77 (257)
T PRK05862          4 ETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL----SF--MD   77 (257)
T ss_pred             ceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc----ch--hH
Confidence            4588899999999999999999999999999999999999999999999999999999999999987531    11  11


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHH
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (357)
                      .+...+..++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.+
T Consensus        78 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  157 (257)
T PRK05862         78 VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMD  157 (257)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence            1222334467789999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCH
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (357)
                      |+++|++++|+||+++|||++++|++++.+.+.                                               
T Consensus       158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------------  190 (257)
T PRK05862        158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEAL-----------------------------------------------  190 (257)
T ss_pred             HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999888765433                                               


Q ss_pred             HHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       273 e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                                          +++++|++.+|.++..+|++++.....+++++++.|...+...+.   ++|++||+++|+
T Consensus       191 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~~~~e~i~af~  247 (257)
T PRK05862        191 --------------------AAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFA---TEDQKEGMAAFV  247 (257)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHh
Confidence                                238889999999999999999998888999999999999988887   999999999999


Q ss_pred             ccCC
Q 018384          353 LNKH  356 (357)
Q Consensus       353 ~~r~  356 (357)
                      ++|+
T Consensus       248 ~kr~  251 (257)
T PRK05862        248 EKRK  251 (257)
T ss_pred             ccCC
Confidence            9985

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.9e-54  Score=397.16  Aligned_cols=255  Identities=21%  Similarity=0.328  Sum_probs=225.6

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhcc--CC
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNT-NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ--GK  108 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~-~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~--~~  108 (357)
                      |.+.+.++++++|++||||||++.|++|. +|+.+|.+++++++.|+++++|||+|.|++||+|.|++++......  ..
T Consensus         1 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (266)
T PRK09245          1 MTDFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGS   80 (266)
T ss_pred             CCCceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            34568999999999999999999999995 9999999999999999999999999999999999999987542110  01


Q ss_pred             hHHH-HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcCh
Q 018384          109 LEEC-KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  187 (357)
Q Consensus       109 ~~~~-~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (357)
                      .... ..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG  160 (266)
T PRK09245         81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG  160 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence            1111 223333456778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 018384          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (357)
Q Consensus       188 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (357)
                      .. +++|+++|++++|+||+++|||++++|++++.+.+.                                         
T Consensus       161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------  199 (266)
T PRK09245        161 MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAAR-----------------------------------------  199 (266)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------------
Confidence            99 999999999999999999999999999888765433                                         


Q ss_pred             cCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018384          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (357)
Q Consensus       267 ~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~e  346 (357)
                                                +++++|++.||.+++.+|++++.....++++.++.|...+...+.   ++|++|
T Consensus       200 --------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e  250 (266)
T PRK09245        200 --------------------------ALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHH---TADHRE  250 (266)
T ss_pred             --------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHhHHH
Confidence                                      348999999999999999999988888899999999998888887   999999


Q ss_pred             hhhheeccCC
Q 018384          347 VSNFQILNKH  356 (357)
Q Consensus       347 gi~afl~~r~  356 (357)
                      |+++|+++|+
T Consensus       251 g~~af~~kr~  260 (266)
T PRK09245        251 AVDAFLEKRP  260 (266)
T ss_pred             HHHHHHcCCC
Confidence            9999999985

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=6.1e-54  Score=394.90  Aligned_cols=247  Identities=23%  Similarity=0.300  Sum_probs=223.2

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      ..+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...    +.  ..
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~--~~   75 (255)
T PRK09674          2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----DL--AA   75 (255)
T ss_pred             ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----ch--hh
Confidence            3578899999999999999999999999999999999999999999999999999999999999987431    11  11


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHH
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (357)
                      .+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~  155 (255)
T PRK09674         76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ  155 (255)
T ss_pred             hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence            1223335577889999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCH
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (357)
                      |+++|+.++|+||+++|||++++|++++.+.+.                                               
T Consensus       156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~-----------------------------------------------  188 (255)
T PRK09674        156 MVLTGESITAQQAQQAGLVSEVFPPELTLERAL-----------------------------------------------  188 (255)
T ss_pred             HHHcCCccCHHHHHHcCCCcEecChHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999887754333                                               


Q ss_pred             HHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       273 e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                                          +++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|+
T Consensus       189 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~i~af~  245 (255)
T PRK09674        189 --------------------QLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAA---TEDRHEGISAFL  245 (255)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh
Confidence                                348999999999999999999998888999999999999988887   999999999999


Q ss_pred             ccCC
Q 018384          353 LNKH  356 (357)
Q Consensus       353 ~~r~  356 (357)
                      ++|+
T Consensus       246 ~kr~  249 (255)
T PRK09674        246 EKRT  249 (255)
T ss_pred             ccCC
Confidence            9885

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-53  Score=395.74  Aligned_cols=255  Identities=21%  Similarity=0.298  Sum_probs=228.9

Q ss_pred             ccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCC
Q 018384           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK  108 (357)
Q Consensus        30 ~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~  108 (357)
                      +...+.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....  ..
T Consensus         7 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~--~~   84 (269)
T PRK06127          7 SSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR--SD   84 (269)
T ss_pred             CCCCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc--cc
Confidence            34456689999999999999999999999999999999999999999999999999998 7999999999875321  11


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      ......+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  164 (269)
T PRK06127         85 AEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGP  164 (269)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCH
Confidence            22223444555677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++|+++|++++|+||+++|||++|+|++++.+.+.+                                         
T Consensus       165 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-----------------------------------------  203 (269)
T PRK06127        165 SAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALAD-----------------------------------------  203 (269)
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHH-----------------------------------------
Confidence            9 9999999999999999999999999998887654443                                         


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                                ++++|+..||.+++.+|++++.....++++.++.|...+...+.   ++|++||
T Consensus       204 --------------------------~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~  254 (269)
T PRK06127        204 --------------------------YAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFD---SEDYREG  254 (269)
T ss_pred             --------------------------HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---ChHHHHH
Confidence                                      38899999999999999999988888899999999999888887   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +.+|+++|+
T Consensus       255 ~~af~ekr~  263 (269)
T PRK06127        255 RAAFMEKRK  263 (269)
T ss_pred             HHHHhcCCC
Confidence            999999985

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-53  Score=395.21  Aligned_cols=253  Identities=23%  Similarity=0.287  Sum_probs=223.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.+++++++ |+++++|||+|.|++||+|+|++++............
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (262)
T PRK08140          3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG   81 (262)
T ss_pred             CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence            356889999999999999999999999999999999999999 9999999999999999999999987431101111111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~  161 (262)
T PRK08140         82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL  161 (262)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence            12222234577889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|+++|++++++||+++|||++|+|++++.+.+.                                              
T Consensus       162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  195 (262)
T PRK08140        162 GLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQ----------------------------------------------  195 (262)
T ss_pred             HHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999888764333                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                           +++++|++.||.++..+|++++.....+++++++.|...+...+.   ++|++||+++|
T Consensus       196 ---------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af  251 (262)
T PRK08140        196 ---------------------QLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGR---SADYAEGVSAF  251 (262)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence                                 348999999999999999999988888999999999999888887   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      +++|+
T Consensus       252 ~~kr~  256 (262)
T PRK08140        252 LEKRA  256 (262)
T ss_pred             hcCCC
Confidence            99985

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-53  Score=395.14  Aligned_cols=253  Identities=23%  Similarity=0.264  Sum_probs=221.2

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++............
T Consensus         4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (263)
T PRK07799          4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDG   83 (263)
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhh
Confidence            35688999999999999999999999999999999999999999999999999999999999999987642110000000


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ......+..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        84 ~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  162 (263)
T PRK07799         84 SYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVAC  162 (263)
T ss_pred             hhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHH
Confidence            0001122223 347889999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|+++|++++|+||+++|||++++|++++.+.+.                                              
T Consensus       163 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  196 (263)
T PRK07799        163 DLLLTGRHITAAEAKEIGLIGHVVPDGQALDKAL----------------------------------------------  196 (263)
T ss_pred             HHHHcCCCCCHHHHHHcCCccEecCcchHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988754332                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                           +++++|++.||.+++.+|++++.....+++++++.|.+.+...+.   ++|++||+++|
T Consensus       197 ---------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~af  252 (263)
T PRK07799        197 ---------------------ELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFL---SEDAKEGPRAF  252 (263)
T ss_pred             ---------------------HHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CccHHHHHHHH
Confidence                                 348899999999999999999988888999999999999988887   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      +++|+
T Consensus       253 ~~~r~  257 (263)
T PRK07799        253 AEKRA  257 (263)
T ss_pred             HccCC
Confidence            99885

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8e-54  Score=394.07  Aligned_cols=248  Identities=21%  Similarity=0.295  Sum_probs=223.1

Q ss_pred             CceEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHH
Q 018384           34 NQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        34 ~~i~~~-~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ..+.++ .+++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++...    +...
T Consensus         6 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~~   81 (256)
T PRK06143          6 AHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL----DQAS   81 (256)
T ss_pred             ccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc----Chhh
Confidence            456666 4688999999999999999999999999999999999999999999999 799999999987532    1222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|.. +
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a  160 (256)
T PRK06143         82 AEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWART  160 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHH
Confidence            3344556677888999999999999999999999999999999999999999999999998 7888899999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|+++|++++|+||+++||||+++|++++.+.+.                                             
T Consensus       161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  195 (256)
T PRK06143        161 RWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVE---------------------------------------------  195 (256)
T ss_pred             HHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888765443                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            +++++|+.+||.++..+|++++.....+++++++.|...+...+.   ++|++||+++
T Consensus       196 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~e~~~a  250 (256)
T PRK06143        196 ----------------------RLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFL---TGEPQRHMAA  250 (256)
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence                                  348999999999999999999988888899999999999988887   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |++||+
T Consensus       251 f~ekr~  256 (256)
T PRK06143        251 FLNRKR  256 (256)
T ss_pred             HHhhcC
Confidence            999985

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=8e-54  Score=398.20  Aligned_cols=251  Identities=24%  Similarity=0.306  Sum_probs=221.8

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhcc---CC----
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ---GK----  108 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~---~~----  108 (357)
                      +..+.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++......   .+    
T Consensus        10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   89 (275)
T PLN02664         10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS   89 (275)
T ss_pred             EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence            44556899999999999999999999999999999999999999999999999999999999987542110   01    


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      ......+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  169 (275)
T PLN02664         90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY  169 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence            11222334445667888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (357)
                      . +++|++||++++|+||+++|||+++||+ +++.+.+.                                         
T Consensus       170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~-----------------------------------------  208 (275)
T PLN02664        170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVR-----------------------------------------  208 (275)
T ss_pred             HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHH-----------------------------------------
Confidence            9 9999999999999999999999999985 66654333                                         


Q ss_pred             cCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018384          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (357)
Q Consensus       267 ~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~e  346 (357)
                                                +++++|+++||.+++.+|++++.....+++++++.|...+...+.   ++|++|
T Consensus       209 --------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e  259 (275)
T PLN02664        209 --------------------------LIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLV---SDDLNE  259 (275)
T ss_pred             --------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---ChhHHH
Confidence                                      348899999999999999999988888999999999998888877   999999


Q ss_pred             hhhheeccCC
Q 018384          347 VSNFQILNKH  356 (357)
Q Consensus       347 gi~afl~~r~  356 (357)
                      |+++|+++|+
T Consensus       260 g~~af~ekr~  269 (275)
T PLN02664        260 AVSAQIQKRK  269 (275)
T ss_pred             HHHHHhccCC
Confidence            9999999985

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-53  Score=396.67  Aligned_cols=255  Identities=20%  Similarity=0.272  Sum_probs=227.1

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ....+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.......+...
T Consensus        15 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~   94 (277)
T PRK08258         15 EARHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPE   94 (277)
T ss_pred             cccceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhH
Confidence            33468899999999999999999999999999999999999999999999999999999999999998743211112222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccC-CCcHHHHHhhcChHH-
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLPGHL-  189 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~~g~~-  189 (357)
                      ...+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|.. 
T Consensus        95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~  174 (277)
T PRK08258         95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGR  174 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHH
Confidence            334445556788899999999999999999999999999999999999999999999999985 788999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|+++|++++|+||+++|||++++|++++.+.+.                                            
T Consensus       175 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  210 (277)
T PRK08258        175 ASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQ--------------------------------------------  210 (277)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999887765333                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                             +++++|++.||.+++.+|++++.....+++++++.|...+...+.   ++|++||++
T Consensus       211 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg~~  264 (277)
T PRK08258        211 -----------------------ALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQ---TEDFRRAYE  264 (277)
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CchHHHHHH
Confidence                                   348899999999999999999998888999999999999988887   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      +|+++|+
T Consensus       265 af~ekr~  271 (277)
T PRK08258        265 AFVAKRK  271 (277)
T ss_pred             HHhcCCC
Confidence            9999985

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-53  Score=394.45  Aligned_cols=251  Identities=21%  Similarity=0.318  Sum_probs=227.2

Q ss_pred             CCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCCh
Q 018384           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        32 ~~~~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      |.+.+.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...    ..
T Consensus         1 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~----~~   76 (260)
T PRK07657          1 MLQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM----NE   76 (260)
T ss_pred             CCceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC----Ch
Confidence            346788886 789999999999999999999999999999999999999999999999 599999999987531    12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH
Q 018384          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (357)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (357)
                      .....+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~  156 (260)
T PRK07657         77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG  156 (260)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH
Confidence            22334455567788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       190 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                       +++|+++|++++++||+++|||++++|++++.+.+.                                           
T Consensus       157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------  193 (260)
T PRK07657        157 RAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI-------------------------------------------  193 (260)
T ss_pred             HHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999888765443                                           


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  348 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi  348 (357)
                                              +++++|+.++|.+++.+|++++.....+++++++.|...+...+.   ++|++||+
T Consensus       194 ------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~  246 (260)
T PRK07657        194 ------------------------EIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIP---TKDRLEGL  246 (260)
T ss_pred             ------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHhHHHHH
Confidence                                    348899999999999999999988888899999999999988887   99999999


Q ss_pred             hheeccCC
Q 018384          349 NFQILNKH  356 (357)
Q Consensus       349 ~afl~~r~  356 (357)
                      ++|+++|+
T Consensus       247 ~af~~~r~  254 (260)
T PRK07657        247 QAFKEKRK  254 (260)
T ss_pred             HHHhcCCC
Confidence            99999885

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.9e-53  Score=393.74  Aligned_cols=251  Identities=20%  Similarity=0.257  Sum_probs=225.7

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ..+.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...   .....
T Consensus         9 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~   85 (266)
T PRK08139          9 EAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAA---RGLAY   85 (266)
T ss_pred             cCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcc---cchhH
Confidence            346788999999999999999999999999999999999999999999999999999999999999987531   11222


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...++..+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|++++|.. +
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A  164 (266)
T PRK08139         86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA  164 (266)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence            334455566788899999999999999999999999999999999999999999999999998765 56799999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|+++|++++|+||+++||||+|+|++++.+.+.+                                            
T Consensus       165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------  200 (266)
T PRK08139        165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVAR--------------------------------------------  200 (266)
T ss_pred             HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999998887654433                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                             ++++|++.||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++
T Consensus       201 -----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~a  254 (266)
T PRK08139        201 -----------------------LAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMM---AEDAEEGIDA  254 (266)
T ss_pred             -----------------------HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CchHHHHHHH
Confidence                                   38999999999999999999998888999999999999888887   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+++|+
T Consensus       255 f~~kr~  260 (266)
T PRK08139        255 FLEKRP  260 (266)
T ss_pred             HhcCCC
Confidence            999885

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=1.8e-53  Score=393.15  Aligned_cols=250  Identities=27%  Similarity=0.372  Sum_probs=226.3

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++...    ....
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~----~~~~   78 (260)
T PRK05809          3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL----NEEE   78 (260)
T ss_pred             cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc----ChHH
Confidence            45688999999999999999999999999999999999999999999999999999 999999999987532    1122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  158 (260)
T PRK05809         79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA  158 (260)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            223334445678889999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|+++|++++|+||+++|||++++|++++.+.+.                                             
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  193 (260)
T PRK05809        159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAK---------------------------------------------  193 (260)
T ss_pred             HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999877754333                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            +++++|+..||.+++.+|++++.....+++++++.|.+.+...+.   ++|++||+++
T Consensus       194 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~a  248 (260)
T PRK05809        194 ----------------------ALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFS---TEDQTEGMTA  248 (260)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                                  348899999999999999999998888999999999999999887   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+++|+
T Consensus       249 f~~~r~  254 (260)
T PRK05809        249 FVEKRE  254 (260)
T ss_pred             HhcCCC
Confidence            999885

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-53  Score=393.46  Aligned_cols=247  Identities=20%  Similarity=0.189  Sum_probs=218.3

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      |.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.......    ...+
T Consensus         1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~----~~~~   76 (255)
T PRK06563          1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG----GFPF   76 (255)
T ss_pred             CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc----hhhh
Confidence            467889999999999999999999999999999999999999999999999999999999999875421111    1111


Q ss_pred             HHH-HHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHH
Q 018384          116 FRT-LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (357)
Q Consensus       116 ~~~-~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (357)
                      ... ...+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus        77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  156 (255)
T PRK06563         77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY  156 (255)
T ss_pred             hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence            111 12223357889999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHH
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  273 (357)
                      ++||++++|+||+++||||+++|++++.+.+.                                                
T Consensus       157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------  188 (255)
T PRK06563        157 LLTGDEFDAQEALRLGLVQEVVPPGEQLERAI------------------------------------------------  188 (255)
T ss_pred             HHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999887754333                                                


Q ss_pred             HHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 018384          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL  353 (357)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~  353 (357)
                                         +++++|++.+|.+++.+|++++.....++.++++.|...+...+.   ++|++||+++|++
T Consensus       189 -------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~~  246 (255)
T PRK06563        189 -------------------ELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFT---SEDAKEGVQAFLE  246 (255)
T ss_pred             -------------------HHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHhc
Confidence                               348899999999999999999988888999999999999988887   9999999999999


Q ss_pred             cCC
Q 018384          354 NKH  356 (357)
Q Consensus       354 ~r~  356 (357)
                      +|+
T Consensus       247 kr~  249 (255)
T PRK06563        247 RRP  249 (255)
T ss_pred             CCC
Confidence            985

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-54  Score=384.80  Aligned_cols=246  Identities=26%  Similarity=0.307  Sum_probs=218.8

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHH
Q 018384           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (357)
Q Consensus        35 ~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (357)
                      ......+++|+.|+||||+++|+++..++.+|.+++..++.|++++++||||.|++||+|.|++++.......-  ....
T Consensus        38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~--~~~~  115 (290)
T KOG1680|consen   38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDV--SDGI  115 (290)
T ss_pred             eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccc--cccc
Confidence            34455678899999999999999999999999999999999999999999999999999999999865321100  0011


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHH
Q 018384          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (357)
Q Consensus       115 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (357)
                      +    .+.+..+.+.+||+||+|||+|+|||++|++.||+||++++|+|++|+.++|++|.+|++++|+|.+|.. |+++
T Consensus       116 ~----~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~  191 (290)
T KOG1680|consen  116 F----LRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEM  191 (290)
T ss_pred             c----cchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHH
Confidence            1    2223344479999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHH
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  273 (357)
                      ++||++++|+||+++|||++|+|.+++...+.                                                
T Consensus       192 ~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv------------------------------------------------  223 (290)
T KOG1680|consen  192 ILTGRRLGAQEAKKIGLVNKVVPSGDALGEAV------------------------------------------------  223 (290)
T ss_pred             HHhcCcccHHHHHhCCceeEeecchhHHHHHH------------------------------------------------
Confidence            99999999999999999999999988653222                                                


Q ss_pred             HHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 018384          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL  353 (357)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~  353 (357)
                                         +++.+|+++||..++..|+.++.+.+.++.+++..|...+...+.   ++|.+|||.+|.+
T Consensus       224 -------------------~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~---~~d~~Eg~~~f~~  281 (290)
T KOG1680|consen  224 -------------------KLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFA---TEDRLEGMTAFAE  281 (290)
T ss_pred             -------------------HHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhh---hHHHHHHHHHhcc
Confidence                               348999999999999999999999999999999999999999988   9999999999999


Q ss_pred             cCC
Q 018384          354 NKH  356 (357)
Q Consensus       354 ~r~  356 (357)
                      ||+
T Consensus       282 kr~  284 (290)
T KOG1680|consen  282 KRK  284 (290)
T ss_pred             cCC
Confidence            885

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=1.8e-53  Score=392.12  Aligned_cols=249  Identities=23%  Similarity=0.292  Sum_probs=221.0

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      |.++++++|++||||||++.|++|.+|+.+|.+++++++.|+ +++|||||.|++||+|+|++++.... .........+
T Consensus         1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~-~~~~~~~~~~   78 (256)
T TIGR02280         1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTP-GGAPDLGRTI   78 (256)
T ss_pred             CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhcc-ccchhHHHHH
Confidence            467889999999999999999999999999999999999999 99999999999999999999875321 1111111122


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHH
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (357)
                      ...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus        79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~  158 (256)
T TIGR02280        79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA  158 (256)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            22234567789999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  274 (357)
                      ++|++++++||+++|||++++|++++.+.+.                                                 
T Consensus       159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------  189 (256)
T TIGR02280       159 MLGEKLDARTAASWGLIWQVVDDAALMDEAQ-------------------------------------------------  189 (256)
T ss_pred             HcCCCCCHHHHHHcCCcceeeChHHHHHHHH-------------------------------------------------
Confidence            9999999999999999999999887765333                                                 


Q ss_pred             HHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018384          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  354 (357)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~  354 (357)
                                        +++++|++.||.+++.+|++++......++++++.|...+...+.   ++|++||+++|+++
T Consensus       190 ------------------~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~~k  248 (256)
T TIGR02280       190 ------------------ALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGR---SADYAEGVTAFLDK  248 (256)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHHcC
Confidence                              348899999999999999999988888899999999999988887   99999999999999


Q ss_pred             CC
Q 018384          355 KH  356 (357)
Q Consensus       355 r~  356 (357)
                      |+
T Consensus       249 r~  250 (256)
T TIGR02280       249 RN  250 (256)
T ss_pred             CC
Confidence            85

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-53  Score=392.42  Aligned_cols=249  Identities=26%  Similarity=0.354  Sum_probs=224.1

Q ss_pred             CCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        32 ~~~~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      ..+.+.++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...   ..  
T Consensus         5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~--   79 (261)
T PRK08138          5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA---GA--   79 (261)
T ss_pred             CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhcc---ch--
Confidence            345678887 788999999999999999999999999999999999999999999999999999999987531   11  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                       ...+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        80 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  158 (261)
T PRK08138         80 -IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFK  158 (261)
T ss_pred             -hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHH
Confidence             112334456678889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|+++|++++++||+++|||++++|++++.+.+.                                            
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  194 (261)
T PRK08138        159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRAL--------------------------------------------  194 (261)
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999888764333                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                             +++++|++.+|.+++.+|++++.....++++++..|.+.+...+.   ++|++||++
T Consensus       195 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~  248 (261)
T PRK08138        195 -----------------------ELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFD---SEDQKEGMD  248 (261)
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                   237888999999999999999988888999999999999988887   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      +|+++|+
T Consensus       249 af~~kr~  255 (261)
T PRK08138        249 AFLEKRK  255 (261)
T ss_pred             HHhcCCC
Confidence            9999985

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-53  Score=391.88  Aligned_cols=252  Identities=21%  Similarity=0.273  Sum_probs=227.5

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      ..+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|++++..... .......
T Consensus         3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~-~~~~~~~   81 (260)
T PRK07511          3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRA-KPPSVQA   81 (260)
T ss_pred             CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhccc-ccchhHH
Confidence            457889999999999999999999999999999999999999999999999999999999999998754211 1122333


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHH
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (357)
                      .+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        82 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~  161 (260)
T PRK07511         82 ASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATE  161 (260)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHH
Confidence            4556667888899999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCH
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (357)
                      |+++|++++++||+++|||++++|++++.+.+.                                               
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~-----------------------------------------------  194 (260)
T PRK07511        162 LLLEGKPISAERLHALGVVNRLAEPGQALAEAL-----------------------------------------------  194 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999887754332                                               


Q ss_pred             HHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       273 e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                                          +++++|++.+|.++..+|++++.....+++++++.|...+...+.   ++|++||+++|+
T Consensus       195 --------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~~f~  251 (260)
T PRK07511        195 --------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLH---HADALEGIAAFL  251 (260)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh
Confidence                                237889999999999999999998888999999999999999887   999999999999


Q ss_pred             ccCC
Q 018384          353 LNKH  356 (357)
Q Consensus       353 ~~r~  356 (357)
                      ++|+
T Consensus       252 ~~r~  255 (260)
T PRK07511        252 EKRA  255 (260)
T ss_pred             ccCC
Confidence            9985

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-53  Score=390.88  Aligned_cols=247  Identities=22%  Similarity=0.273  Sum_probs=219.0

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      |.+.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...   .....
T Consensus         1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~   77 (254)
T PRK08252          1 MSDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARG---ERPSI   77 (254)
T ss_pred             CCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcc---cchhh
Confidence            345688999999999999999999999999999999999999999999999999999999999999987531   11111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                         ....+..++  ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        78 ---~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a  152 (254)
T PRK08252         78 ---PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA  152 (254)
T ss_pred             ---hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence               111122222  1469999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|+++|++++|+||+++|||++|+|++++.+.+.                                             
T Consensus       153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  187 (254)
T PRK08252        153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAAL---------------------------------------------  187 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888764333                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            +++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++
T Consensus       188 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~eg~~a  242 (254)
T PRK08252        188 ----------------------ELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFT---SADAKEGATA  242 (254)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHH
Confidence                                  348899999999999999999988888899999999999988887   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+++|+
T Consensus       243 f~~kr~  248 (254)
T PRK08252        243 FAEKRA  248 (254)
T ss_pred             HhcCCC
Confidence            999875

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-53  Score=392.09  Aligned_cols=248  Identities=23%  Similarity=0.302  Sum_probs=224.6

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHH
Q 018384           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (357)
Q Consensus        35 ~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (357)
                      .+.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++....   .......
T Consensus         3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~~~~~   78 (257)
T PRK07658          3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVT---EAEQATE   78 (257)
T ss_pred             eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccC---chhhHHH
Confidence            67889999999999999985 9999999999999999999999999999999999999999999875321   1122233


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHH
Q 018384          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (357)
Q Consensus       115 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (357)
                      +......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus        79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  158 (257)
T PRK07658         79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM  158 (257)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence            444556788899999999999999999999999999999999999999999999999999999999999999998 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHH
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  273 (357)
                      +++|++++++||+++||||+++|++++.+.+.                                                
T Consensus       159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------  190 (257)
T PRK07658        159 MLTSEPITGAEALKWGLVNGVFPEETLLDDAK------------------------------------------------  190 (257)
T ss_pred             HHcCCCcCHHHHHHcCCcCeecChhHHHHHHH------------------------------------------------
Confidence            99999999999999999999999888764333                                                


Q ss_pred             HHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 018384          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL  353 (357)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~  353 (357)
                                         +++++|++.||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|++
T Consensus       191 -------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~af~~  248 (257)
T PRK07658        191 -------------------KLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFT---SEDAKEGVQAFLE  248 (257)
T ss_pred             -------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHc
Confidence                               348899999999999999999988888999999999999999887   9999999999999


Q ss_pred             cCC
Q 018384          354 NKH  356 (357)
Q Consensus       354 ~r~  356 (357)
                      +|+
T Consensus       249 kr~  251 (257)
T PRK07658        249 KRK  251 (257)
T ss_pred             CCC
Confidence            885

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.8e-53  Score=390.74  Aligned_cols=242  Identities=24%  Similarity=0.319  Sum_probs=220.1

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      +++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++...    .......+...+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~----~~~~~~~~~~~~   77 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM----SPSEVQKFVNSL   77 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc----ChHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999984 899999999987531    122233455556


Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcCC
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA  198 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~  198 (357)
                      ..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|++||+
T Consensus        78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~  157 (251)
T PLN02600         78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR  157 (251)
T ss_pred             HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence            6788889999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             CCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHHHHHH
Q 018384          199 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS  278 (357)
Q Consensus       199 ~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~  278 (357)
                      +++++||+++||||+++|++++.+.+.                                                     
T Consensus       158 ~~~a~eA~~~Glv~~vv~~~~~~~~a~-----------------------------------------------------  184 (251)
T PLN02600        158 RIGAREAASMGLVNYCVPAGEAYEKAL-----------------------------------------------------  184 (251)
T ss_pred             ccCHHHHHHcCCCcEeeChhHHHHHHH-----------------------------------------------------
Confidence            999999999999999999888754332                                                     


Q ss_pred             HhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018384          279 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH  356 (357)
Q Consensus       279 l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~r~  356 (357)
                                    +++++|++.||.+++.+|++++.....++++.++.|...+...+.   ++|++||+++|+++|+
T Consensus       185 --------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~ekr~  245 (251)
T PLN02600        185 --------------ELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLK---TKDRLEGLAAFAEKRK  245 (251)
T ss_pred             --------------HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhcCCC
Confidence                          348999999999999999999988888999999999999999887   9999999999999985

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.9e-53  Score=391.44  Aligned_cols=254  Identities=20%  Similarity=0.268  Sum_probs=225.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC-CceEEEEecCCCccccccChHHHHHhhccC--Ch
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP-NIGFVSMKGSGRAFCAGGDIVSLYHFMNQG--KL  109 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~-~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~--~~  109 (357)
                      ++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+ ++++|||||.|++||+|+|++++.......  ..
T Consensus         3 ~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (266)
T PRK05981          3 FKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGG   82 (266)
T ss_pred             cceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccc
Confidence            567899999999999999999999999999999999999999876 499999999999999999999875321100  00


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH
Q 018384          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (357)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (357)
                      .....+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~  162 (266)
T PRK05981         83 DAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKA  162 (266)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHH
Confidence            11223334456788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       190 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                       +++|+++|++++|+||+++|||++++|++++.+.+.                                           
T Consensus       163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~-------------------------------------------  199 (266)
T PRK05981        163 RAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAM-------------------------------------------  199 (266)
T ss_pred             HHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999888764333                                           


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  348 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi  348 (357)
                                              +++++|+..||.++..+|++++.....++.++++.|...+...+.   ++|++||+
T Consensus       200 ------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~~  252 (266)
T PRK05981        200 ------------------------KLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGK---TEDFKEGV  252 (266)
T ss_pred             ------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhc---ChhHHHHH
Confidence                                    348889999999999999999988888999999999999888887   99999999


Q ss_pred             hheeccCC
Q 018384          349 NFQILNKH  356 (357)
Q Consensus       349 ~afl~~r~  356 (357)
                      .+|+++|+
T Consensus       253 ~af~~kr~  260 (266)
T PRK05981        253 GAFLQKRP  260 (266)
T ss_pred             HHHhcCCC
Confidence            99999986

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-53  Score=390.41  Aligned_cols=252  Identities=22%  Similarity=0.309  Sum_probs=221.5

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++....... ....
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~   81 (262)
T PRK05995          3 YETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYS-DDEN   81 (262)
T ss_pred             CceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccC-chhh
Confidence            456889999999999999999999999999999999999999999999999999999999999999875321111 1111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++ +++++|.. ++
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~  160 (262)
T PRK05995         82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR  160 (262)
T ss_pred             hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence            12233456778889999999999999999999999999999999999999999999999999887754 88999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|+++|++++|+||+++|||++|+|++++.+.+.                                              
T Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  194 (262)
T PRK05995        161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVD----------------------------------------------  194 (262)
T ss_pred             HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999887765443                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHH-HHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~-l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                           +++++|++.||.+++.+|++++.....++.+. ++.|...+...+.   ++|++||+++
T Consensus       195 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~~~a  250 (262)
T PRK05995        195 ---------------------ELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRA---TEEAREGVAA  250 (262)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                                 34889999999999999999998878888888 8888888878777   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+++|+
T Consensus       251 f~~kr~  256 (262)
T PRK05995        251 FLEKRK  256 (262)
T ss_pred             HhcCCC
Confidence            999985

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.7e-53  Score=388.46  Aligned_cols=247  Identities=24%  Similarity=0.299  Sum_probs=216.9

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.....  ....
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~--~~~~   80 (259)
T PRK06494          3 LPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGK--RGWP   80 (259)
T ss_pred             CceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCc--chhh
Confidence            46788999999999999999999999999999999999999999999999999998 79999999998753211  1111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      .    ..+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        81 ~----~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a  155 (259)
T PRK06494         81 E----SGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRA  155 (259)
T ss_pred             h----HHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHH
Confidence            1    112222 334589999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|+++|++++|+||+++||||+++|++++.+.+.                                             
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  190 (259)
T PRK06494        156 MGMILTGRRVTAREGLELGFVNEVVPAGELLAAAE---------------------------------------------  190 (259)
T ss_pred             HHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999887765433                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHH--HHHHHHhhhcCCCCChhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE--YRMSLQGVSRLISGDFYEVS  348 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e--~~~~~~~~~~~~s~d~~egi  348 (357)
                                            +++++|+..||.+++.+|++++.....+++++++.|  ...+...+.   ++|++||+
T Consensus       191 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~d~~eg~  245 (259)
T PRK06494        191 ----------------------RWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRA---SQDYIEGP  245 (259)
T ss_pred             ----------------------HHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---CccHHHHH
Confidence                                  348899999999999999999988888899999998  456667776   99999999


Q ss_pred             hheeccCC
Q 018384          349 NFQILNKH  356 (357)
Q Consensus       349 ~afl~~r~  356 (357)
                      ++|+++|+
T Consensus       246 ~af~~kr~  253 (259)
T PRK06494        246 KAFAEKRP  253 (259)
T ss_pred             HHHHccCC
Confidence            99999875

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8e-53  Score=388.56  Aligned_cols=248  Identities=21%  Similarity=0.278  Sum_probs=224.8

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      +.+.++++++|++||||||++.|++|.+|+.+|.++++.+ .|+++++|||+|.|++||+|+|++++...   .......
T Consensus         6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~   81 (260)
T PRK07659          6 ESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSS---NDESKFD   81 (260)
T ss_pred             ceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhc---cCchhHH
Confidence            4689999999999999999999999999999999999999 58899999999999999999999987532   1122334


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHH
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (357)
                      .+...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        82 ~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~  161 (260)
T PRK07659         82 GVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQ  161 (260)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHH
Confidence            4556667788899999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCH
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (357)
                      |+++|++++|+||+++||||+++ ++++.+.+.                                               
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~-----------------------------------------------  193 (260)
T PRK07659        162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAK-----------------------------------------------  193 (260)
T ss_pred             HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHH-----------------------------------------------
Confidence            99999999999999999999999 677654333                                               


Q ss_pred             HHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       273 e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                                          +++++|++.||.+++.+|++++.....++++.++.|...+...+.   ++|++||+++|+
T Consensus       194 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~af~  250 (260)
T PRK07659        194 --------------------QKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQ---TADHKEGIRAFL  250 (260)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHhHHHHHHHHh
Confidence                                348899999999999999999988888999999999999988887   999999999999


Q ss_pred             ccCC
Q 018384          353 LNKH  356 (357)
Q Consensus       353 ~~r~  356 (357)
                      ++|+
T Consensus       251 ~kr~  254 (260)
T PRK07659        251 EKRL  254 (260)
T ss_pred             cCCC
Confidence            9985

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5e-53  Score=387.57  Aligned_cols=247  Identities=22%  Similarity=0.315  Sum_probs=220.9

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      |++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... .   
T Consensus         1 m~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-~---   76 (249)
T PRK05870          1 MMDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGR-P---   76 (249)
T ss_pred             CCccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhccccc-c---
Confidence            456688999999999999999999999999999999999999999999999999999999999999987542111 1   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      .......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a  156 (249)
T PRK05870         77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA  156 (249)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence            122334455667789999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||++++|+||+++|||++++  +++.+.+.                                             
T Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~---------------------------------------------  189 (249)
T PRK05870        157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAAL---------------------------------------------  189 (249)
T ss_pred             HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHH---------------------------------------------
Confidence            9999999999999999999999999  45554333                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~-~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                            +++++|++.||.+++.+|++++.... .+++++++.|...+...+.   ++|++||++
T Consensus       190 ----------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~  244 (249)
T PRK05870        190 ----------------------ELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQ---SPEFAARLA  244 (249)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhc---ChhHHHHHH
Confidence                                  34899999999999999999998877 8899999999999888887   999999999


Q ss_pred             heecc
Q 018384          350 FQILN  354 (357)
Q Consensus       350 afl~~  354 (357)
                      +|+++
T Consensus       245 af~~~  249 (249)
T PRK05870        245 AAQRR  249 (249)
T ss_pred             HHhcC
Confidence            99874

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-52  Score=387.53  Aligned_cols=252  Identities=19%  Similarity=0.243  Sum_probs=219.8

Q ss_pred             CCceEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~-~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ++.+.++++ ++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... ....
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~~   81 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTA-DRAT   81 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhccc-chhh
Confidence            456788886 68999999999999999999999999999999999999999999999999999999987532111 1111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      .......+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++ ++|.. +
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~-~vG~~~a  160 (262)
T PRK07468         82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVA-RMGEANA  160 (262)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHh-hccHHHH
Confidence            112233456678899999999999999999999999999999999999999999999999999999988654 58998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|+++|++++|+||+++|||++++|++++.+.+.                                             
T Consensus       161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~---------------------------------------------  195 (262)
T PRK07468        161 RRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVE---------------------------------------------  195 (262)
T ss_pred             HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999877754333                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            +++++|++.+|.++..+|++++......++++++.|...+...+.   ++|++||+++
T Consensus       196 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~~~a  250 (262)
T PRK07468        196 ----------------------AEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWE---TEEAREGIAA  250 (262)
T ss_pred             ----------------------HHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                                  238899999999999999999987666789999999999888887   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+++|+
T Consensus       251 f~~kr~  256 (262)
T PRK07468        251 FFDKRA  256 (262)
T ss_pred             HHcCCC
Confidence            999985

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=1.2e-52  Score=387.92  Aligned_cols=252  Identities=21%  Similarity=0.267  Sum_probs=221.1

Q ss_pred             ccCCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCC
Q 018384           30 DDLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK  108 (357)
Q Consensus        30 ~~~~~~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~  108 (357)
                      +...+.+.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... ...
T Consensus         5 ~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~   83 (265)
T PLN02888          5 TVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVF-KGD   83 (265)
T ss_pred             cCCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhc-cch
Confidence            44456788886 7899999999999999999999999999999999999999999999999999999999864321 111


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                         ..   .....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        84 ---~~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  157 (265)
T PLN02888         84 ---VK---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGA  157 (265)
T ss_pred             ---hh---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCH
Confidence               11   112345667889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++|+++|++++|+||+++|||+++||++++.+.+.                                          
T Consensus       158 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------  195 (265)
T PLN02888        158 NRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAR------------------------------------------  195 (265)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999887754333                                          


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                               +++++|++.+|.+++.+|++++.....+++++++.|...+...+. ..++|++||
T Consensus       196 -------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~-~~~~d~~e~  249 (265)
T PLN02888        196 -------------------------EVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYN-GMTKEQFQK  249 (265)
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-cCCHHHHHH
Confidence                                     348999999999999999999988888999999999887766641 138999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +++|+++|+
T Consensus       250 ~~af~ekr~  258 (265)
T PLN02888        250 MQEFIAGRS  258 (265)
T ss_pred             HHHHHhcCC
Confidence            999999985

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=7.7e-53  Score=389.44  Aligned_cols=252  Identities=21%  Similarity=0.228  Sum_probs=217.7

Q ss_pred             CCceEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~-~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ++.+.++++ ++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... +.+...
T Consensus         4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~~~   82 (265)
T PRK05674          4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSA-DLDYNT   82 (265)
T ss_pred             cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcc-cccchh
Confidence            567889885 789999999999999999999999999999999999999999999999999999999875321 101111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      .......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ ++++++|.. +
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a  161 (265)
T PRK05674         83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA  161 (265)
T ss_pred             hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence            11122345567888999999999999999999999999999999999999999999999999988765 488999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||+.++|+||+++|||++|+|++++.+.+.                                             
T Consensus       162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  196 (265)
T PRK05674        162 RRYALTAERFDGRRARELGLLAESYPAAELEAQVE---------------------------------------------  196 (265)
T ss_pred             HHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999877765433                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHH-HHHHHHHhhhcCCCCChhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVR-EYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~-e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                            +++++|+++||.+++.+|++++.....+++++++. +...+...+.   ++|++||++
T Consensus       197 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~e~~~  251 (265)
T PRK05674        197 ----------------------AWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRV---SAEGQEGLR  251 (265)
T ss_pred             ----------------------HHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                  34889999999999999999999888888888875 4456666665   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      +|+++|+
T Consensus       252 af~~kr~  258 (265)
T PRK05674        252 AFLEKRT  258 (265)
T ss_pred             HHHccCC
Confidence            9999986

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-52  Score=390.46  Aligned_cols=254  Identities=26%  Similarity=0.326  Sum_probs=222.5

Q ss_pred             CCceEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH-
Q 018384           33 CNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE-  110 (357)
Q Consensus        33 ~~~i~~~~~~-~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~-  110 (357)
                      ++.+.+++++ +|++||||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.......... 
T Consensus         4 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   83 (272)
T PRK06210          4 YDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRD   83 (272)
T ss_pred             cceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccccc
Confidence            4668899998 99999999999999999999999999999999999999999999999999999999875421100000 


Q ss_pred             -HHHHH----HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhc
Q 018384          111 -ECKDF----FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  185 (357)
Q Consensus       111 -~~~~~----~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~  185 (357)
                       ....+    ...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  163 (272)
T PRK06210         84 TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRL  163 (272)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhh
Confidence             00011    1123456678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHH
Q 018384          186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (357)
Q Consensus       186 ~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (357)
                      +|.. +++|+++|++++|+||+++||||+++|++++.+.+.                                       
T Consensus       164 ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------  204 (272)
T PRK06210        164 VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTL---------------------------------------  204 (272)
T ss_pred             hCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------
Confidence            9999 999999999999999999999999999877754333                                       


Q ss_pred             HHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhc-CchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 018384          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  343 (357)
Q Consensus       265 ~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~-~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d  343 (357)
                                                  +++++|++. +|.++..+|++++.....+++++++.|...+...+.   ++|
T Consensus       205 ----------------------------~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~  253 (272)
T PRK06210        205 ----------------------------AYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQ---RPD  253 (272)
T ss_pred             ----------------------------HHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhc---Ccc
Confidence                                        347889985 999999999999998888999999999999888887   999


Q ss_pred             hhhhhhheeccCC
Q 018384          344 FYEVSNFQILNKH  356 (357)
Q Consensus       344 ~~egi~afl~~r~  356 (357)
                      ++||+++|+++|+
T Consensus       254 ~~egi~af~~kr~  266 (272)
T PRK06210        254 FIEGVASFLEKRP  266 (272)
T ss_pred             HHHHHHHHhccCC
Confidence            9999999999985

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-52  Score=385.88  Aligned_cols=245  Identities=21%  Similarity=0.270  Sum_probs=217.6

Q ss_pred             CceEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           34 NQVLVEGKAN---SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        34 ~~i~~~~~~~---v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      +.+.++++++   |++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.....  .. 
T Consensus         3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~--~~-   79 (251)
T PRK06023          3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAM--GG-   79 (251)
T ss_pred             ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccc--cc-
Confidence            4588888774   99999999999999999999999999999999999999999999999999999998754211  11 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                        ..+...+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~  157 (251)
T PRK06023         80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR  157 (251)
T ss_pred             --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence              11223445678889999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++++++|++++++||+++|||++++|++++.+.+.                                            
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  193 (251)
T PRK06023        158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETL--------------------------------------------  193 (251)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999888765433                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                             +++++|+..||.+++.+|++++... ..+++.++.|...+...+.   ++|++||++
T Consensus       194 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~---~~~~~e~~~  246 (251)
T PRK06023        194 -----------------------KAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLK---SAEARAAFE  246 (251)
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                   3489999999999999999998763 4688999999888888887   999999999


Q ss_pred             heecc
Q 018384          350 FQILN  354 (357)
Q Consensus       350 afl~~  354 (357)
                      +|+++
T Consensus       247 af~e~  251 (251)
T PRK06023        247 AFMRR  251 (251)
T ss_pred             HHhcC
Confidence            99874

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=1.7e-52  Score=386.63  Aligned_cols=248  Identities=20%  Similarity=0.276  Sum_probs=218.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      .+.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....  .... 
T Consensus         2 ~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~--~~~~-   77 (261)
T PRK03580          2 SESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE--APDA-   77 (261)
T ss_pred             CceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC--cchh-
Confidence            446899999999999999996 5999999999999999999999999999999999 7999999999875321  1111 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                        .+.......+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        78 --~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a  155 (261)
T PRK03580         78 --DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA  155 (261)
T ss_pred             --hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence              1111223456788899999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++++++|++++|+||+++|||++++|++++.+.+..                                            
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~--------------------------------------------  191 (261)
T PRK03580        156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARE--------------------------------------------  191 (261)
T ss_pred             HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999998887654433                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHH----HHHHhhhcCCCCChhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR----MSLQGVSRLISGDFYE  346 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~----~~~~~~~~~~s~d~~e  346 (357)
                                             ++++|++.+|.+++.+|++++.....+++++++.|..    .+...+.   ++|++|
T Consensus       192 -----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~d~~e  245 (261)
T PRK03580        192 -----------------------LAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLH---SEDALE  245 (261)
T ss_pred             -----------------------HHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhc---CccHHH
Confidence                                   3889999999999999999998888899999998874    5566666   999999


Q ss_pred             hhhheeccCC
Q 018384          347 VSNFQILNKH  356 (357)
Q Consensus       347 gi~afl~~r~  356 (357)
                      |+++|+++|+
T Consensus       246 ~~~af~ekr~  255 (261)
T PRK03580        246 GPRAFAEKRD  255 (261)
T ss_pred             HHHHHhcCCC
Confidence            9999999985

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.6e-53  Score=386.47  Aligned_cols=248  Identities=23%  Similarity=0.236  Sum_probs=216.4

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      |.+.+.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++....  .  ..
T Consensus         1 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~--~--~~   76 (254)
T PRK08259          1 MSMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGR--G--NR   76 (254)
T ss_pred             CCceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhccc--c--hh
Confidence            4566899999999999999999999999999999999999999999999999999999999999999875321  1  11


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ....  ....+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|.+|++++|++++|.. +
T Consensus        77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  154 (254)
T PRK08259         77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA  154 (254)
T ss_pred             hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            1100  001112233479999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|+++|+.++|+||+++||||+|+|++++.+.+.                                             
T Consensus       155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  189 (254)
T PRK08259        155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAE---------------------------------------------  189 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988865443                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            +++++|++.||.+++.+|++++.....+++++++.|...+...+    .+|++||+++
T Consensus       190 ----------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~----~~d~~egi~a  243 (254)
T PRK08259        190 ----------------------ELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVL----AAEALEGAAR  243 (254)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH----hhHHHHHHHH
Confidence                                  34889999999999999999998888889999999988766655    4999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+++|.
T Consensus       244 f~~~~~  249 (254)
T PRK08259        244 FAAGAG  249 (254)
T ss_pred             HHhhhc
Confidence            999874

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-52  Score=386.62  Aligned_cols=249  Identities=27%  Similarity=0.365  Sum_probs=226.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ...+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++....  ...   
T Consensus         4 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~--~~~---   78 (259)
T PRK06688          4 VTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAP--PKP---   78 (259)
T ss_pred             CCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccC--cch---
Confidence            456889999999999999999899999999999999999999999999999999999999999999875421  111   


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +.
T Consensus        79 ~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~  158 (259)
T PRK06688         79 PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAA  158 (259)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHH
Confidence            23445567788899999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|+++|++++++||+++|||++++|++++.+.+.                                              
T Consensus       159 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~----------------------------------------------  192 (259)
T PRK06688        159 EMLLLGEPLSAEEALRIGLVNRVVPAAELDAEAD----------------------------------------------  192 (259)
T ss_pred             HHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999877764333                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                           +++++|++.+|.+++.+|++++.....+++++++.|...+...+.   ++|+++|+++|
T Consensus       193 ---------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~af  248 (259)
T PRK06688        193 ---------------------AQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLR---TPDFREGATAF  248 (259)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 347889999999999999999998888999999999999999887   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      +++|+
T Consensus       249 ~~~~~  253 (259)
T PRK06688        249 IEKRK  253 (259)
T ss_pred             HcCCC
Confidence            99875

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=2.1e-52  Score=384.74  Aligned_cols=246  Identities=18%  Similarity=0.192  Sum_probs=210.9

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      +.+.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...  ....   
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~--~~~~---   76 (256)
T TIGR03210         2 EDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG--YDGR---   76 (256)
T ss_pred             CceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc--ccch---
Confidence            4588899999999999999999999999999999999999999999999999999 799999999987421  1111   


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|.. |+
T Consensus        77 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~  156 (256)
T TIGR03210        77 GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR  156 (256)
T ss_pred             hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence            11223345678889999999999999999999999999999999999999999999999998888899999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|+++|++++|+||+++|||++++|++++.+.+.                                              
T Consensus       157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  190 (256)
T TIGR03210       157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQ----------------------------------------------  190 (256)
T ss_pred             HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999888765443                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTF-DECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l-~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                           +++++|++.||.+++.+|++++....... .+.  .|...+...+.   ++|++||+++
T Consensus       191 ---------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~--~~~~~~~~~~~---~~d~~e~~~a  244 (256)
T TIGR03210       191 ---------------------KWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAG--MGMYALKLYYD---TAESREGVKA  244 (256)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHcc---ChhHHHHHHH
Confidence                                 34899999999999999999987644321 112  23345555565   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+++|+
T Consensus       245 f~~kr~  250 (256)
T TIGR03210       245 FQEKRK  250 (256)
T ss_pred             HhccCC
Confidence            999986

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-52  Score=385.61  Aligned_cols=252  Identities=23%  Similarity=0.236  Sum_probs=221.7

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      |++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ......
T Consensus         1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~~~   79 (262)
T PRK07509          1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSP-GNAVKL   79 (262)
T ss_pred             CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhccc-chhhhh
Confidence            5678999999999999999999999999999999999999999999999999999999999999999875421 111111


Q ss_pred             HHH----HHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcCh
Q 018384          112 CKD----FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  187 (357)
Q Consensus       112 ~~~----~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (357)
                      ...    ....+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g  159 (262)
T PRK07509         80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR  159 (262)
T ss_pred             HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence            111    1123345667788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 018384          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (357)
Q Consensus       188 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (357)
                      .. +++|+++|++++|+||+++|||++++++  +.+.+.                                         
T Consensus       160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~a~-----------------------------------------  196 (262)
T PRK07509        160 KDVARELTYTARVFSAEEALELGLVTHVSDD--PLAAAL-----------------------------------------  196 (262)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHHHH-----------------------------------------
Confidence            99 9999999999999999999999999953  332222                                         


Q ss_pred             cCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018384          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (357)
Q Consensus       267 ~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~e  346 (357)
                                                +++++|++.+|.++..+|++++.....+++++++.|...+...+.   ++|++|
T Consensus       197 --------------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e  247 (262)
T PRK07509        197 --------------------------ALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLL---GKNQKI  247 (262)
T ss_pred             --------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHH
Confidence                                      348899999999999999999998888999999999999888887   999999


Q ss_pred             hhhheeccCC
Q 018384          347 VSNFQILNKH  356 (357)
Q Consensus       347 gi~afl~~r~  356 (357)
                      |+++|+++|+
T Consensus       248 ~~~af~ekr~  257 (262)
T PRK07509        248 AVKAQMKKRA  257 (262)
T ss_pred             HHHHHhcCCC
Confidence            9999999985

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=2.1e-52  Score=385.45  Aligned_cols=248  Identities=17%  Similarity=0.214  Sum_probs=213.8

Q ss_pred             ceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHHH
Q 018384           35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        35 ~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      .+.+++ +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ......
T Consensus         3 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~~   81 (259)
T TIGR01929         3 DIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY-IDDSGV   81 (259)
T ss_pred             eEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccc-cchhhH
Confidence            477888 899999999999999999999999999999999999999999999999 79999999987642110 011111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..  .....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        82 ~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~  159 (259)
T TIGR01929        82 HR--LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAR  159 (259)
T ss_pred             HH--HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHH
Confidence            11  1234567788999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|+++|++++|+||+++|||++|+|++++.+.+.                                              
T Consensus       160 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  193 (259)
T TIGR01929       160 EIWFLCRQYDAEQALDMGLVNTVVPLADLEKETV----------------------------------------------  193 (259)
T ss_pred             HHHHhCCccCHHHHHHcCCcccccCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999887765433                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                           +++++|++.||.+++.+|++++..... ....+..|...+...+.   ++|++||+++|
T Consensus       194 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~---~~d~~egi~af  248 (259)
T TIGR01929       194 ---------------------RWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFYM---TEEGQEGRNAF  248 (259)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhc---CccHHHHHHHH
Confidence                                 348999999999999999999876443 45555567677777776   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      +++|+
T Consensus       249 ~~kr~  253 (259)
T TIGR01929       249 LEKRQ  253 (259)
T ss_pred             hccCC
Confidence            99985

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-52  Score=384.38  Aligned_cols=249  Identities=21%  Similarity=0.316  Sum_probs=221.8

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      |++.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++....  .....
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~--~~~~~   78 (257)
T PRK06495          2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVI--KGPGD   78 (257)
T ss_pred             CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhcc--CCchh
Confidence            4567899999999999999998 59999999999999999999999999999999999999999999875421  11122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.   |+++++++++|.. +
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a  155 (257)
T PRK06495         79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT  155 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence            23334455677888999999999999999999999999999999999999999999999996   4567899999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|+++|++++|+||+++|||++++|++++.+.+.                                             
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~---------------------------------------------  190 (257)
T PRK06495        156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAM---------------------------------------------  190 (257)
T ss_pred             HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888765433                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            +++++|++.||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++
T Consensus       191 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~egi~a  245 (257)
T PRK06495        191 ----------------------EIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAK---TEDAKEAQRA  245 (257)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence                                  348999999999999999999988888999999999999988887   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+++|+
T Consensus       246 f~~kr~  251 (257)
T PRK06495        246 FLEKRP  251 (257)
T ss_pred             HhccCC
Confidence            999985

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-52  Score=388.02  Aligned_cols=255  Identities=20%  Similarity=0.265  Sum_probs=218.2

Q ss_pred             CCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccC---
Q 018384           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---  107 (357)
Q Consensus        32 ~~~~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~---  107 (357)
                      .++.+.++. +++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++.......   
T Consensus         7 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   86 (276)
T PRK05864          7 TMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLT   86 (276)
T ss_pred             CCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccccccc
Confidence            455678887 7899999999999999999999999999999999999999999999999999999999864211000   


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccC-CCcHHHHHhhcC
Q 018384          108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLP  186 (357)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~~  186 (357)
                      ...........+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~v  166 (276)
T PRK05864         87 RPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAI  166 (276)
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhh
Confidence            1111122334456677889999999999999999999999999999999999999999999999997 788999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHH
Q 018384          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  265 (357)
Q Consensus       187 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (357)
                      |.. +++|+++|++++|+||+++|||++++|++++.+.+.                                        
T Consensus       167 G~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------  206 (276)
T PRK05864        167 GSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCY----------------------------------------  206 (276)
T ss_pred             CHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHH----------------------------------------
Confidence            999 999999999999999999999999999888765433                                        


Q ss_pred             HcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcC-CHHHHHHHHHHHHH-HhhhcCCCCC
Q 018384          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMSL-QGVSRLISGD  343 (357)
Q Consensus       266 ~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~-~l~~~l~~e~~~~~-~~~~~~~s~d  343 (357)
                                                 +++++|+..||.+++.+|++++..... +++++++.|..... ..+.   ++|
T Consensus       207 ---------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~~d  256 (276)
T PRK05864        207 ---------------------------AIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLL---TAN  256 (276)
T ss_pred             ---------------------------HHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc---Chh
Confidence                                       348999999999999999999887665 78888888765322 2344   999


Q ss_pred             hhhhhhheeccCC
Q 018384          344 FYEVSNFQILNKH  356 (357)
Q Consensus       344 ~~egi~afl~~r~  356 (357)
                      ++||+++|+++|+
T Consensus       257 ~~e~~~af~~kr~  269 (276)
T PRK05864        257 FEEAVAARAEKRP  269 (276)
T ss_pred             HHHHHHHHhccCC
Confidence            9999999999985

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-52  Score=385.75  Aligned_cols=249  Identities=21%  Similarity=0.287  Sum_probs=215.5

Q ss_pred             CCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        32 ~~~~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      .++.+.+++ +++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|.|++++....  ....
T Consensus         9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~~   86 (268)
T PRK07327          9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMA--DDFE   86 (268)
T ss_pred             CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhcc--CcHH
Confidence            456788888 5789999999999999999999999999999999999999999999999999999999875421  1222


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      ....++.....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  166 (268)
T PRK07327         87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAK  166 (268)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHH
Confidence            2333445556788899999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|++||++++|+||+++|||++++|++++.+.+.                                            
T Consensus       167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  202 (268)
T PRK07327        167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKAL--------------------------------------------  202 (268)
T ss_pred             HHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999888765433                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF---QTFDECLVREYRMSLQGVSRLISGDFYE  346 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~---~~l~~~l~~e~~~~~~~~~~~~s~d~~e  346 (357)
                                             +++++|++.||.+++.+|++++....   ..+++.+..|.    ..+.   ++|++|
T Consensus       203 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~---~~d~~e  252 (268)
T PRK07327        203 -----------------------EVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFS---GPDVRE  252 (268)
T ss_pred             -----------------------HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHcc---ChhHHH
Confidence                                   34899999999999999999986522   24555555443    3444   999999


Q ss_pred             hhhheeccCC
Q 018384          347 VSNFQILNKH  356 (357)
Q Consensus       347 gi~afl~~r~  356 (357)
                      |+++|+++|+
T Consensus       253 g~~af~ekr~  262 (268)
T PRK07327        253 GLASLREKRA  262 (268)
T ss_pred             HHHHHHhcCC
Confidence            9999999985

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-52  Score=384.34  Aligned_cols=249  Identities=24%  Similarity=0.319  Sum_probs=217.5

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCCh
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      .+.+.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++....   ..
T Consensus         5 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~---~~   81 (262)
T PRK06144          5 TSTDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS---TA   81 (262)
T ss_pred             cCCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc---ch
Confidence            4456789999999999999999999999999999999999999999999999999998 7999999999875421   11


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEeccccc-ccccCCCcHHHHHhhcChH
Q 018384          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL-IGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~-~Gl~p~~g~~~~l~r~~g~  188 (357)
                      .....+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||++ +|++|++|++++|++++|.
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~  161 (262)
T PRK06144         82 EDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA  161 (262)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH
Confidence            222234445667888899999999999999999999999999999999999999999997 9999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++++++|++++|+||+++|||++|+|++++.+.+.                                          
T Consensus       162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------  199 (262)
T PRK06144        162 ARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARAD------------------------------------------  199 (262)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999887765433                                          


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                               +++++|++.||.++..+|+.++......++    .+...+...+.   ++|++||
T Consensus       200 -------------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~----~~~~~~~~~~~---~~~~~e~  247 (262)
T PRK06144        200 -------------------------ALAELLAAHAPLTLRATKEALRRLRREGLP----DGDDLIRMCYM---SEDFREG  247 (262)
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCHH----HHHHHHHHHhc---ChHHHHH
Confidence                                     348999999999999999999976555443    34456666666   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +++|+++|+
T Consensus       248 ~~af~~kr~  256 (262)
T PRK06144        248 VEAFLEKRP  256 (262)
T ss_pred             HHHHhcCCC
Confidence            999999985

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8e-52  Score=379.29  Aligned_cols=241  Identities=20%  Similarity=0.202  Sum_probs=213.5

Q ss_pred             EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHH
Q 018384           39 EGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT  118 (357)
Q Consensus        39 ~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~  118 (357)
                      +++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...   ........+...
T Consensus         7 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~---~~~~~~~~~~~~   82 (249)
T PRK07938          7 TPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT---PGFTALIDANRG   82 (249)
T ss_pred             ccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc---cchhHHHHHHHH
Confidence            457899999999998 5999999999999999999999999999999999999999999986431   111222223344


Q ss_pred             HHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcC
Q 018384          119 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG  197 (357)
Q Consensus       119 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG  197 (357)
                      ...++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++|++++|.. +++|+++|
T Consensus        83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg  159 (249)
T PRK07938         83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA  159 (249)
T ss_pred             HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence            4567888999999999999999999999999999999999999999999999985   5667899999999 99999999


Q ss_pred             CCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHHHHH
Q 018384          198 AKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIID  277 (357)
Q Consensus       198 ~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~  277 (357)
                      ++++|+||+++|||+++||++++.+.+.                                                    
T Consensus       160 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------------  187 (249)
T PRK07938        160 ATITAAELHHFGSVEEVVPRDQLDEAAL----------------------------------------------------  187 (249)
T ss_pred             CcCCHHHHHHCCCccEEeCHHHHHHHHH----------------------------------------------------
Confidence            9999999999999999999888765443                                                    


Q ss_pred             HHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018384          278 SLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH  356 (357)
Q Consensus       278 ~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~r~  356 (357)
                                     +++++|+.+||.+++.+|++++.....++++.++.|...+...+.   ++|++||+++|++||+
T Consensus       188 ---------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~ekr~  248 (249)
T PRK07938        188 ---------------EVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNL---AGVSDEHRDAFVEKRK  248 (249)
T ss_pred             ---------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CccHHHHHHHHHhcCC
Confidence                           348999999999999999999988888899999999988888887   9999999999999986

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=2.3e-52  Score=382.71  Aligned_cols=244  Identities=30%  Similarity=0.452  Sum_probs=228.5

Q ss_pred             EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHH
Q 018384           37 LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFF  116 (357)
Q Consensus        37 ~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~  116 (357)
                      .++.+|+|++|+||+|++.|++|.+++.+|.++|+.++.|+++++||++|.|++||+|.|++++...    ..+....+.
T Consensus         1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~   76 (245)
T PF00378_consen    1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF   76 (245)
T ss_dssp             EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred             CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence            4789999999999999889999999999999999999999999999999999999999999998764    345566777


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHh
Q 018384          117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL  195 (357)
Q Consensus       117 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~l  195 (357)
                      ..++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. +.++++
T Consensus        77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l  156 (245)
T PF00378_consen   77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL  156 (245)
T ss_dssp             HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             cCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHHH
Q 018384          196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI  275 (357)
Q Consensus       196 tG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i  275 (357)
                      +|++++|+||+++|||++++|++++.+.+..                                                 
T Consensus       157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~-------------------------------------------------  187 (245)
T PF00378_consen  157 TGEPISAEEALELGLVDEVVPDEELDEEALE-------------------------------------------------  187 (245)
T ss_dssp             HTCEEEHHHHHHTTSSSEEESGGGHHHHHHH-------------------------------------------------
T ss_pred             ccccchhHHHHhhcceeEEcCchhhhHHHHH-------------------------------------------------
Confidence            9999999999999999999999887654443                                                 


Q ss_pred             HHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018384          276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  354 (357)
Q Consensus       276 ~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~  354 (357)
                                        ++++++..+|.+++.+|+.+++.....+++.++.|...+...+.   ++|++||+++|+||
T Consensus       188 ------------------~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  188 ------------------LAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFK---SEDFQEGIAAFLEK  245 (245)
T ss_dssp             ------------------HHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHT---SHHHHHHHHHHHTT
T ss_pred             ------------------HHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHhCc
Confidence                              38999999999999999999999888999999999999999998   99999999999986

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=6.4e-52  Score=385.30  Aligned_cols=254  Identities=19%  Similarity=0.211  Sum_probs=222.6

Q ss_pred             cccCCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC--CccccccChHHHHHhhc
Q 018384           29 TDDLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG--RAFCAGGDIVSLYHFMN  105 (357)
Q Consensus        29 ~~~~~~~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g--~~F~~G~Dl~~~~~~~~  105 (357)
                      .|.....+.+++ +++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|  ++||+|.|++++.... 
T Consensus         6 ~~~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~-   83 (278)
T PLN03214          6 PPGATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPK-   83 (278)
T ss_pred             CCCCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccc-
Confidence            344556889998 6899999999986 6999999999999999999999999999999998  6999999999875311 


Q ss_pred             cCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccc-cCCCcHHHHHhh
Q 018384          106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF-HPDAGASFYLSH  184 (357)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl-~p~~g~~~~l~r  184 (357)
                       ........+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ +|++|++++|++
T Consensus        84 -~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~  162 (278)
T PLN03214         84 -TSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGR  162 (278)
T ss_pred             -cchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHH
Confidence             111222233333455778899999999999999999999999999999999999999999999999 599999999999


Q ss_pred             cChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHH
Q 018384          185 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV  263 (357)
Q Consensus       185 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (357)
                      ++|.. +++|+++|+.++++||+++|||++++|++++.+.+.                                      
T Consensus       163 ~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------  204 (278)
T PLN03214        163 VIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAA--------------------------------------  204 (278)
T ss_pred             hcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHH--------------------------------------
Confidence            99999 999999999999999999999999999877764333                                      


Q ss_pred             HHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 018384          264 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  343 (357)
Q Consensus       264 ~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d  343 (357)
                                                   +++++|+..+|.+++.+|+++++....+++++++.|...+...+.   ++|
T Consensus       205 -----------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d  252 (278)
T PLN03214        205 -----------------------------SAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLS---EPS  252 (278)
T ss_pred             -----------------------------HHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC---CHH
Confidence                                         348899999999999999999988888899999999998888887   999


Q ss_pred             hhhhhhheeccC
Q 018384          344 FYEVSNFQILNK  355 (357)
Q Consensus       344 ~~egi~afl~~r  355 (357)
                      ++||+++|+++.
T Consensus       253 ~~egi~aflek~  264 (278)
T PLN03214        253 IIKALGGVMERL  264 (278)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.3e-51  Score=380.15  Aligned_cols=249  Identities=29%  Similarity=0.403  Sum_probs=222.2

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      +..+.++..++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++.+..   .......
T Consensus         4 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~---~~~~~~~   80 (257)
T COG1024           4 YETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS---PEDGNAA   80 (257)
T ss_pred             CCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc---ccchhHH
Confidence            4568888999999999999999999999999999999999999999999999999999999999999864   1112222


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +.
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~  160 (257)
T COG1024          81 ENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK  160 (257)
T ss_pred             HHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence            25666677899999999999999999999999999999999999999999999999999999889999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      +|++||+.++++||+++|||++++++ +++.+.+..                                            
T Consensus       161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~--------------------------------------------  196 (257)
T COG1024         161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALE--------------------------------------------  196 (257)
T ss_pred             HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHH--------------------------------------------
Confidence            99999999999999999999999985 466544433                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                             ++++++. +|.++..+|+.++.....++++.+..|...+...+.   ++|++||+++
T Consensus       197 -----------------------~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~d~~eg~~a  249 (257)
T COG1024         197 -----------------------LARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFS---SEDFREGVRA  249 (257)
T ss_pred             -----------------------HHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhc---ChhHHHHHHH
Confidence                                   3666666 999999999999998777799999999999888666   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |++ |+
T Consensus       250 ~~~-r~  254 (257)
T COG1024         250 FLE-RK  254 (257)
T ss_pred             HHc-cC
Confidence            998 54

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-51  Score=387.31  Aligned_cols=253  Identities=22%  Similarity=0.261  Sum_probs=215.7

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccC-----
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG-----  107 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~-----  107 (357)
                      ++.+.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.......     
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (296)
T PRK08260          3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP   82 (296)
T ss_pred             cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence            356889999999999999999999999999999999999999999999999999999999999999864211000     


Q ss_pred             -------C-hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHH
Q 018384          108 -------K-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS  179 (357)
Q Consensus       108 -------~-~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~  179 (357)
                             . ......+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~  162 (296)
T PRK08260         83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS  162 (296)
T ss_pred             cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence                   0 11112233334567788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHH
Q 018384          180 FYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIH  258 (357)
Q Consensus       180 ~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (357)
                      ++|++++|.. +++|+++|++++|+||+++|||++|+|++++.+.+.                                 
T Consensus       163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------  209 (296)
T PRK08260        163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAAR---------------------------------  209 (296)
T ss_pred             hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHH---------------------------------
Confidence            9999999999 999999999999999999999999999877754333                                 


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhc-CchHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHh
Q 018384          259 RIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRF--QTFDECLVREYRMSLQG  335 (357)
Q Consensus       259 ~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~-~p~a~~~~k~~l~~~~~--~~l~~~l~~e~~~~~~~  335 (357)
                                                        +++++|+.+ +|.+++.+|++++....  ..++. ...|...+...
T Consensus       210 ----------------------------------~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~-~~~e~~~~~~~  254 (296)
T PRK08260        210 ----------------------------------ALAREIADNTSPVSVALTRQMMWRMAGADHPMEA-HRVDSRAIYSR  254 (296)
T ss_pred             ----------------------------------HHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHH-HHHHHHHHHHH
Confidence                                              348889885 99999999999997643  23443 35577777777


Q ss_pred             hhcCCCCChhhhhhheeccCC
Q 018384          336 VSRLISGDFYEVSNFQILNKH  356 (357)
Q Consensus       336 ~~~~~s~d~~egi~afl~~r~  356 (357)
                      +.   ++|++||+++|+++|+
T Consensus       255 ~~---~~d~~egi~af~~kr~  272 (296)
T PRK08260        255 GR---SGDGKEGVSSFLEKRP  272 (296)
T ss_pred             cc---ChhHHHHHHHHhcCCC
Confidence            76   9999999999999985

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=1.4e-51  Score=382.71  Aligned_cols=251  Identities=18%  Similarity=0.217  Sum_probs=216.3

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      .++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ....
T Consensus        11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~   89 (273)
T PRK07396         11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGY-VDDD   89 (273)
T ss_pred             CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccc-cchh
Confidence            356788999999999999999999999999999999999999999999999999999 69999999998642110 0111


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      ....+  ....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~  167 (273)
T PRK07396         90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK  167 (273)
T ss_pred             hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence            11111  123466788999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|+++|++++|+||+++||||+|+|++++.+.+.                                            
T Consensus       168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  203 (273)
T PRK07396        168 AREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETV--------------------------------------------  203 (273)
T ss_pred             HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999887765443                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                             +++++|++.+|.+++.+|++++.... .++...+.|...+...+.   ++|++||+.
T Consensus       204 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~---~~d~~egi~  256 (273)
T PRK07396        204 -----------------------RWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYM---TEEAQEGRN  256 (273)
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhc---ChhHHHHHH
Confidence                                   34899999999999999999987644 455555567777777776   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      +|+++|+
T Consensus       257 af~~kr~  263 (273)
T PRK07396        257 AFNEKRQ  263 (273)
T ss_pred             HHhCCCC
Confidence            9999985

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=2e-51  Score=379.21  Aligned_cols=248  Identities=18%  Similarity=0.210  Sum_probs=218.7

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecC-C-CccccccChHHHHHhhccCChH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-G-RAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~-g-~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+ +++|||||. | ++||+|+|++++....  .+  
T Consensus         3 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~--~~--   77 (261)
T PRK11423          3 MQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG--RD--   77 (261)
T ss_pred             ccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc--cc--
Confidence            457889999999999999999999999999999999999999888 999999996 3 8999999999874321  11  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                       ...+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~  156 (261)
T PRK11423         78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI  156 (261)
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence             122334456788899999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|+++|++++|+||+++||||+|+|++++++.+.                                            
T Consensus       157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  192 (261)
T PRK11423        157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTL--------------------------------------------  192 (261)
T ss_pred             HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999887765433                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc-CCH-HHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTF-DECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~-~~l-~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                             +++++|++.+|.+++.+|++++.... ..+ +.+++.|...+...+.   ++|++||
T Consensus       193 -----------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~eg  246 (261)
T PRK11423        193 -----------------------QMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYD---SEDYQEG  246 (261)
T ss_pred             -----------------------HHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhC---ChhHHHH
Confidence                                   34899999999999999999986543 344 6888888888888887   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +.+|+++|+
T Consensus       247 ~~af~~kr~  255 (261)
T PRK11423        247 MNAFLEKRK  255 (261)
T ss_pred             HHHHhccCC
Confidence            999999985

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-51  Score=374.93  Aligned_cols=241  Identities=24%  Similarity=0.315  Sum_probs=215.5

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      +.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++...    .   ...+
T Consensus         2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~----~---~~~~   74 (248)
T PRK06072          2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD----F---AIDL   74 (248)
T ss_pred             eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh----h---HHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999987431    1   1223


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHh
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL  195 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~l  195 (357)
                      ...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll  154 (248)
T PRK06072         75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV  154 (248)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence            34456678889999999999999999999999999999999999999999999999999999999999999966999999


Q ss_pred             cCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHHH
Q 018384          196 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI  275 (357)
Q Consensus       196 tG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i  275 (357)
                      +|++++|+||+++|||+++   +++.+.+.                                                  
T Consensus       155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~--------------------------------------------------  181 (248)
T PRK06072        155 LGGEFTAEEAERWGLLKIS---EDPLSDAE--------------------------------------------------  181 (248)
T ss_pred             hCCccCHHHHHHCCCcccc---chHHHHHH--------------------------------------------------
Confidence            9999999999999999963   23332222                                                  


Q ss_pred             HHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccC
Q 018384          276 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK  355 (357)
Q Consensus       276 ~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~r  355 (357)
                                       +++++|++.||.+++.+|++++.....++++.++.|...+...+.   ++|++||+++|+++|
T Consensus       182 -----------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~~kr  241 (248)
T PRK06072        182 -----------------EMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGK---TEDFKEGISSFKEKR  241 (248)
T ss_pred             -----------------HHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhC---ChhHHHHHHHHhcCC
Confidence                             348999999999999999999988888999999999999888887   999999999999998


Q ss_pred             C
Q 018384          356 H  356 (357)
Q Consensus       356 ~  356 (357)
                      +
T Consensus       242 ~  242 (248)
T PRK06072        242 E  242 (248)
T ss_pred             C
Confidence            6

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=3.3e-51  Score=375.50  Aligned_cols=241  Identities=21%  Similarity=0.263  Sum_probs=210.1

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      |.++++++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|++||+|.|+.++..       .....+
T Consensus         3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-------~~~~~~   74 (251)
T TIGR03189         3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-------DQCAAM   74 (251)
T ss_pred             EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-------hhHHHH
Confidence            678889999999999997 599999999999999999999999999999999999999999987531       111223


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHH
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (357)
                      ......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|.. +++|+
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~  153 (251)
T TIGR03189        75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLL  153 (251)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHH
Confidence            344566788899999999999999999999999999999999999999999999999987 4578999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  274 (357)
                      ++|++++|+||+++|||++++|+.+ . .+..+                                               
T Consensus       154 ltg~~~~a~eA~~~Glv~~v~~~~~-~-~a~~~-----------------------------------------------  184 (251)
T TIGR03189       154 YSGRSIDGAEGARIGLANAVAEDPE-N-AALAW-----------------------------------------------  184 (251)
T ss_pred             HcCCCCCHHHHHHCCCcceecCcHH-H-HHHHH-----------------------------------------------
Confidence            9999999999999999999997533 1 11111                                               


Q ss_pred             HHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHH-HHHHHHHHhhhcCCCCChhhhhhheec
Q 018384          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV-REYRMSLQGVSRLISGDFYEVSNFQIL  353 (357)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~-~e~~~~~~~~~~~~s~d~~egi~afl~  353 (357)
                                         ++++|+++||.+++.+|++++.....++++++. .|...+...+.   ++|++||+++|++
T Consensus       185 -------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~af~e  242 (251)
T TIGR03189       185 -------------------FDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMA---THDAVEGLNAFLE  242 (251)
T ss_pred             -------------------HHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhC---CHhHHHHHHHHHh
Confidence                               257899999999999999999888888888764 67777777776   9999999999999


Q ss_pred             cCC
Q 018384          354 NKH  356 (357)
Q Consensus       354 ~r~  356 (357)
                      +|+
T Consensus       243 kr~  245 (251)
T TIGR03189       243 KRP  245 (251)
T ss_pred             cCC
Confidence            986

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.5e-51  Score=376.47  Aligned_cols=251  Identities=22%  Similarity=0.213  Sum_probs=221.4

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ...+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... ......
T Consensus         5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~   83 (260)
T PRK07827          5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGG-DPYDAA   83 (260)
T ss_pred             CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhccc-CchhHH
Confidence            3468889999999999999999999999999999999999999999999999999999999999998754210 111112


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF  192 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~  192 (357)
                      ..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++++++..+++
T Consensus        84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~  163 (260)
T PRK07827         84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR  163 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHH
Confidence            23445567788899999999999999999999999999999999999999999999999999999999999987655999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCH
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (357)
                      |+++|++++|+||+++|||+++++  ++.+.+.                                               
T Consensus       164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~-----------------------------------------------  194 (260)
T PRK07827        164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVA-----------------------------------------------  194 (260)
T ss_pred             HHHhCCccCHHHHHHcCCcccchH--HHHHHHH-----------------------------------------------
Confidence            999999999999999999999974  3543332                                               


Q ss_pred             HHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       273 e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                                          +++++|++.||.++..+|+++++.....+++.++.|...+...+.   ++|++||+++|+
T Consensus       195 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~af~  251 (260)
T PRK07827        195 --------------------ALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFV---SDEAREGMTAFL  251 (260)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHh
Confidence                                348899999999999999999998888999999999999888887   999999999999


Q ss_pred             ccCC
Q 018384          353 LNKH  356 (357)
Q Consensus       353 ~~r~  356 (357)
                      ++|+
T Consensus       252 ~kr~  255 (260)
T PRK07827        252 QKRP  255 (260)
T ss_pred             cCCC
Confidence            9885

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.3e-50  Score=371.34  Aligned_cols=243  Identities=19%  Similarity=0.210  Sum_probs=219.9

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      |+..+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|+.++....  ...  
T Consensus         3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~--~~~--   78 (249)
T PRK07110          3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQ--TGK--   78 (249)
T ss_pred             CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhcc--chh--
Confidence            5667889999999999999999999999999999999999999999999999999999999999999875421  111  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                       ..+..  ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        79 -~~~~~--~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a  155 (249)
T PRK07110         79 -GTFTE--ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG  155 (249)
T ss_pred             -hhHhh--HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence             11221  4678889999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++++++|++++++||+++|||++|+|++++.+.+.                                             
T Consensus       156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  190 (249)
T PRK07110        156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKAL---------------------------------------------  190 (249)
T ss_pred             HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999887764333                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            +.+++|++.||.+++.+|+.++.....++++.++.|...+...+.   ++|++||+++
T Consensus       191 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~~  245 (249)
T PRK07110        191 ----------------------ELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFH---QPEVKRRIES  245 (249)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC---CHhHHHHHHH
Confidence                                  238899999999999999999999889999999999999999987   9999999987


Q ss_pred             e
Q 018384          351 Q  351 (357)
Q Consensus       351 f  351 (357)
                      .
T Consensus       246 ~  246 (249)
T PRK07110        246 L  246 (249)
T ss_pred             h
Confidence            4

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-50  Score=369.81  Aligned_cols=235  Identities=22%  Similarity=0.303  Sum_probs=210.5

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      +.++++++|++||||||++.|++|.+|+.+|.+++++++.| ++++|||||.|++||+|+|+++...         ...+
T Consensus         2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~   71 (243)
T PRK07854          2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF   71 (243)
T ss_pred             ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence            56888999999999999999999999999999999999865 8999999999999999999984211         1223


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHH
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (357)
                      ...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus        72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~  151 (243)
T PRK07854         72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML  151 (243)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence            34456678889999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  274 (357)
                      ++|++++|+||+++|||++|++   ++ .+.                                                 
T Consensus       152 ltg~~~~a~eA~~~Glv~~v~~---~~-~a~-------------------------------------------------  178 (243)
T PRK07854        152 LGAEKLTAEQALATGMANRIGT---LA-DAQ-------------------------------------------------  178 (243)
T ss_pred             HcCCCcCHHHHHHCCCcccccC---HH-HHH-------------------------------------------------
Confidence            9999999999999999999965   22 122                                                 


Q ss_pred             HHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018384          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  354 (357)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~  354 (357)
                                        +++++|++.||.++..+|++++..  .+++++++.|...+...+.   ++|++||+++|+++
T Consensus       179 ------------------~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~~k  235 (243)
T PRK07854        179 ------------------AWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWA---SQDAIEAQVARIEK  235 (243)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhc---CchHHHHHHHHhCC
Confidence                              248899999999999999999875  6799999999998888887   99999999999999


Q ss_pred             CC
Q 018384          355 KH  356 (357)
Q Consensus       355 r~  356 (357)
                      |+
T Consensus       236 r~  237 (243)
T PRK07854        236 RP  237 (243)
T ss_pred             CC
Confidence            85

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1.5e-50  Score=382.52  Aligned_cols=251  Identities=17%  Similarity=0.211  Sum_probs=213.3

Q ss_pred             CCCceEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCC
Q 018384           32 LCNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK  108 (357)
Q Consensus        32 ~~~~i~~~~--~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~  108 (357)
                      .++.|.+++  +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... ...
T Consensus        63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~-~~~  141 (327)
T PLN02921         63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG-YVG  141 (327)
T ss_pred             CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc-ccc
Confidence            466788887  589999999999999999999999999999999999999999999999 8999999999764210 011


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      ......+  ....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus       142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~  219 (327)
T PLN02921        142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ  219 (327)
T ss_pred             hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence            1111111  12346778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++|+++|+.++|+||+++|||++|+|++++.+.+.+                                         
T Consensus       220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~-----------------------------------------  258 (327)
T PLN02921        220 KKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVK-----------------------------------------  258 (327)
T ss_pred             HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHH-----------------------------------------
Confidence            9 9999999999999999999999999998887654433                                         


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                                ++++|+++||.+++.+|++++..... .....+.|...+...+.   ++|++||
T Consensus       259 --------------------------~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~---s~d~~eg  308 (327)
T PLN02921        259 --------------------------WCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYG---SEEGNEG  308 (327)
T ss_pred             --------------------------HHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                      38999999999999999999876543 33333334466666666   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +++|+++|+
T Consensus       309 i~Af~ekr~  317 (327)
T PLN02921        309 RTAYLEGRA  317 (327)
T ss_pred             HHHHhccCC
Confidence            999999985

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-50  Score=379.07  Aligned_cols=249  Identities=19%  Similarity=0.214  Sum_probs=209.9

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHH-HHH---hh-ccCC
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVS-LYH---FM-NQGK  108 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~-~~~---~~-~~~~  108 (357)
                      +.+.++++++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|+++ +..   .. ....
T Consensus         5 ~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~   84 (298)
T PRK12478          5 QTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGR   84 (298)
T ss_pred             eEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccc
Confidence            468889999999999999999999999999999999999999999999999999999999999985 211   00 0000


Q ss_pred             hHHHHHH---HH---HHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccc-cccCCCcHHHH
Q 018384          109 LEECKDF---FR---TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI-GFHPDAGASFY  181 (357)
Q Consensus       109 ~~~~~~~---~~---~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~-Gl~p~~g~~~~  181 (357)
                      ......+   ..   ....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++ |++|  ++++ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~-  161 (298)
T PRK12478         85 WDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW-  161 (298)
T ss_pred             cCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH-
Confidence            0001111   01   11235667889999999999999999999999999999999999999999997 8875  3333 


Q ss_pred             HhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHH
Q 018384          182 LSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI  260 (357)
Q Consensus       182 l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (357)
                      + +++|.. +++|++||++++|+||+++|||++|||++++++.+.+                                  
T Consensus       162 ~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~----------------------------------  206 (298)
T PRK12478        162 L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAE----------------------------------  206 (298)
T ss_pred             H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHH----------------------------------
Confidence            2 458998 9999999999999999999999999999888754443                                  


Q ss_pred             HHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHhhhcC
Q 018384          261 DIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRL  339 (357)
Q Consensus       261 ~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~-~~l~~~l~~e~~~~~~~~~~~  339 (357)
                                                       ++++|+..||.+++.+|++++.... .+++++++.|...+...+.  
T Consensus       207 ---------------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~--  251 (298)
T PRK12478        207 ---------------------------------VATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRN--  251 (298)
T ss_pred             ---------------------------------HHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc--
Confidence                                             3889999999999999999998766 4699999999999988887  


Q ss_pred             CCCChh--------hhhhheeccCC
Q 018384          340 ISGDFY--------EVSNFQILNKH  356 (357)
Q Consensus       340 ~s~d~~--------egi~afl~~r~  356 (357)
                       ++|++        ||++||++||+
T Consensus       252 -s~d~~e~~~~~~~egv~Af~ekR~  275 (298)
T PRK12478        252 -TPDALEFIRTAETQGVRAAVERRD  275 (298)
T ss_pred             -ChhHHHHHHHHHHHHHHHHHHhcC
Confidence             99997        59999999986

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.5e-50  Score=366.91  Aligned_cols=232  Identities=23%  Similarity=0.264  Sum_probs=209.5

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++....    ....
T Consensus         3 ~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~----~~~~   78 (258)
T PRK06190          3 EPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDG----SAYG   78 (258)
T ss_pred             CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhccc----chhh
Confidence            457889999999999999999999999999999999999999999999999999999999999999875321    1111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      .  ...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  156 (258)
T PRK06190         79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR  156 (258)
T ss_pred             H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence            1  22345678889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|+++|++++|+||+++|||++++|++++.+.+.                                              
T Consensus       157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  190 (258)
T PRK06190        157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRAR----------------------------------------------  190 (258)
T ss_pred             HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999888765333                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  337 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~  337 (357)
                                           +++++|+.+||.+++.+|++++.....+++++++.|...+...+.
T Consensus       191 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~  235 (258)
T PRK06190        191 ---------------------RLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNR  235 (258)
T ss_pred             ---------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHc
Confidence                                 348899999999999999999998888999999999999988886

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=9.2e-50  Score=367.05  Aligned_cols=246  Identities=16%  Similarity=0.171  Sum_probs=212.8

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.+.++++++|++|+||||++.|++|.+|+.+|.+++++++  +++++|||||.|++||+|+|++++.....  .....
T Consensus         3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~--~~~~~   78 (255)
T PRK07112          3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPD--AGRAD   78 (255)
T ss_pred             CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccc--cchhh
Confidence            456889999999999999999999999999999999999998  36999999999999999999998754211  11111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ......+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +.+|++++|.. ++
T Consensus        79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~  157 (255)
T PRK07112         79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAH  157 (255)
T ss_pred             hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHH
Confidence            11123345678889999999999999999999999999999999999999999999999999865 56799999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|+++|++++|+||+++|||++++|+++.  ...                                              
T Consensus       158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~----------------------------------------------  189 (255)
T PRK07112        158 YMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLR----------------------------------------------  189 (255)
T ss_pred             HHHHhCCcccHHHHHHcCCCceecCcHHH--HHH----------------------------------------------
Confidence            99999999999999999999999986542  111                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                           +++++|++.+|.+++.+|++++.. ...++++++.|.......+.   ++|++||+++|
T Consensus       190 ---------------------~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~af  244 (255)
T PRK07112        190 ---------------------KHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFA---DPENLRKIARY  244 (255)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHc---ChHHHHHHHHH
Confidence                                 237899999999999999999865 55789999999998888887   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      +++|+
T Consensus       245 ~~kr~  249 (255)
T PRK07112        245 VETGK  249 (255)
T ss_pred             HcCCC
Confidence            99985

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=7.4e-50  Score=375.67  Aligned_cols=253  Identities=16%  Similarity=0.181  Sum_probs=213.3

Q ss_pred             CCceEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-------CccccccChHHHHHh
Q 018384           33 CNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-------RAFCAGGDIVSLYHF  103 (357)
Q Consensus        33 ~~~i~~~~--~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-------~~F~~G~Dl~~~~~~  103 (357)
                      +..+.+++  +++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|       ++||+|+|++++...
T Consensus        22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            34588888  899999999999999999999999999999999999999999999998       599999999875321


Q ss_pred             h---ccCCh-H--HHHHHHH-HHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEe-CceEEecccccccccCC
Q 018384          104 M---NQGKL-E--ECKDFFR-TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPD  175 (357)
Q Consensus       104 ~---~~~~~-~--~~~~~~~-~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~  175 (357)
                      .   ..... .  ....... ....+...+..+||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~  181 (302)
T PRK08321        102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG  181 (302)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence            0   00000 0  0011111 12345667889999999999999999999999999999999 69999999999999999


Q ss_pred             CcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChh
Q 018384          176 AGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKN  254 (357)
Q Consensus       176 ~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (357)
                      +|++++|++++|.. +++|++||++++|+||+++|||+++||++++.+.+.                             
T Consensus       182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~-----------------------------  232 (302)
T PRK08321        182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEAL-----------------------------  232 (302)
T ss_pred             chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHH-----------------------------
Confidence            99999999999999 999999999999999999999999999888765443                             


Q ss_pred             hHHHHHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 018384          255 SVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQ  334 (357)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~  334 (357)
                                                            +++++|++.+|.+++.+|++++.... .+.+....|.+.+..
T Consensus       233 --------------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~  273 (302)
T PRK08321        233 --------------------------------------EWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRL  273 (302)
T ss_pred             --------------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHH
Confidence                                                  34899999999999999999987654 344445567777777


Q ss_pred             hhhcCCCCChhhhhhheeccCC
Q 018384          335 GVSRLISGDFYEVSNFQILNKH  356 (357)
Q Consensus       335 ~~~~~~s~d~~egi~afl~~r~  356 (357)
                      .+.   ++|++||+++|+++|+
T Consensus       274 ~~~---~~d~~egi~af~ekr~  292 (302)
T PRK08321        274 AYM---TDEAQEGRDAFLEKRD  292 (302)
T ss_pred             Hhc---CHHHHHHHHHHhccCC
Confidence            776   9999999999999985

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=7.5e-48  Score=383.46  Aligned_cols=247  Identities=15%  Similarity=0.074  Sum_probs=218.0

Q ss_pred             eEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHHc-CCCceEEEEecCCCc-cccccChHHH
Q 018384           36 VLVEGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGFVSMKGSGRA-FCAGGDIVSL  100 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~-------------Nal~~~~~~~L~~~l~~~~~-d~~v~~vvl~g~g~~-F~~G~Dl~~~  100 (357)
                      +.++++++|++||||||++.             |+||.+|+.+|.+++.+++. |+++++|||||.|+. ||+|.|++..
T Consensus       260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~  339 (546)
T TIGR03222       260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE  339 (546)
T ss_pred             EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence            34566899999999999999             99999999999999999984 599999999999987 9999999842


Q ss_pred             HHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE-ccceechh-hhhhccCCeEEE-------eCceEEeccccccc
Q 018384          101 YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL-NGVTMGGG-AGVSIPGTFRVA-------CGKTVFATPETLIG  171 (357)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v-~G~a~GgG-~~lal~~D~~ia-------~~~a~f~~pe~~~G  171 (357)
                      ..    .+...........+.++.+|..+||||||+| ||+|+||| ++|+++||+||+       +++++|++||+++|
T Consensus       340 ~~----~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lG  415 (546)
T TIGR03222       340 AH----KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFG  415 (546)
T ss_pred             cc----ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccc
Confidence            11    1111112223334567889999999999999 89999999 999999999999       89999999999999


Q ss_pred             ccCCCcHHHHHhhcC-hHH-H--HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhc
Q 018384          172 FHPDAGASFYLSHLP-GHL-G--EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSD  247 (357)
Q Consensus       172 l~p~~g~~~~l~r~~-g~~-a--~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  247 (357)
                      ++|++|++++|++++ |.. +  .++++||++++|+||+++|||++++|++++.+.+..                     
T Consensus       416 l~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~---------------------  474 (546)
T TIGR03222       416 LYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRI---------------------  474 (546)
T ss_pred             cCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHH---------------------
Confidence            999999999999998 887 7  559999999999999999999999999888654443                     


Q ss_pred             cCCCChhhHHHHHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHH-HH
Q 018384          248 LVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LV  326 (357)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~-l~  326 (357)
                                                                    ++++|++.||.+++.+|++++.....+++++ +.
T Consensus       475 ----------------------------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~  508 (546)
T TIGR03222       475 ----------------------------------------------ALEERASFSPDALTGLEANLRFAGPETMETRIFG  508 (546)
T ss_pred             ----------------------------------------------HHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHH
Confidence                                                          4899999999999999999999999999999 99


Q ss_pred             HHHHHHHHhhhcCCCCChhh---hhhheeccCC
Q 018384          327 REYRMSLQGVSRLISGDFYE---VSNFQILNKH  356 (357)
Q Consensus       327 ~e~~~~~~~~~~~~s~d~~e---gi~afl~~r~  356 (357)
                      +|...+..++.   ++|.+|   |+++|++||+
T Consensus       509 ~e~~~~~~~~~---~~d~~e~~~g~~af~ekr~  538 (546)
T TIGR03222       509 RLTAWQNWIFN---RPNAVGENGALKVYGSGKK  538 (546)
T ss_pred             HHHHHHHHHhc---CCcccchhhHHHHHccCCC
Confidence            99999999988   999999   9999999997

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=8e-48  Score=346.68  Aligned_cols=214  Identities=21%  Similarity=0.287  Sum_probs=189.0

Q ss_pred             CCCceEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhcc
Q 018384           32 LCNQVLVEGK-----ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ  106 (357)
Q Consensus        32 ~~~~i~~~~~-----~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~  106 (357)
                      |+++|.++..     ++|++|+||||++ |++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++....  
T Consensus         1 ~~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~--   77 (222)
T PRK05869          1 MNEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLS--   77 (222)
T ss_pred             CccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccC--
Confidence            4566766665     8899999999985 9999999999999999999999999999999999999999999875421  


Q ss_pred             CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcC
Q 018384          107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (357)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (357)
                        ......+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++
T Consensus        78 --~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i  155 (222)
T PRK05869         78 --AQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA  155 (222)
T ss_pred             --hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh
Confidence              112222334456788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHH
Q 018384          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  265 (357)
Q Consensus       187 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (357)
                      |.. +++++++|++++|+||+++|||++++|++++.+.+.                                        
T Consensus       156 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------  195 (222)
T PRK05869        156 GPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAA----------------------------------------  195 (222)
T ss_pred             CHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHH----------------------------------------
Confidence            999 999999999999999999999999999888765333                                        


Q ss_pred             HcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhh
Q 018384          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGR  317 (357)
Q Consensus       266 ~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~  317 (357)
                                                 +++++|+..+|.+++.+|++++...
T Consensus       196 ---------------------------~~a~~ia~~~~~a~~~~K~~~~~~~  220 (222)
T PRK05869        196 ---------------------------AWARRFLDGPPHALAAAKAGISDVY  220 (222)
T ss_pred             ---------------------------HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                                       3488999999999999999998654

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.9e-47  Score=381.83  Aligned_cols=245  Identities=15%  Similarity=0.065  Sum_probs=215.9

Q ss_pred             EEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHHc-CCCceEEEEecCC-CccccccChHHHHH
Q 018384           38 VEGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGFVSMKGSG-RAFCAGGDIVSLYH  102 (357)
Q Consensus        38 ~~~~~~v~~I~ln~p~~~-------------Nal~~~~~~~L~~~l~~~~~-d~~v~~vvl~g~g-~~F~~G~Dl~~~~~  102 (357)
                      ++++++|++||||||++.             |+||.+|+.+|.+++++++. |+++++|||||.| ++||+|+|++....
T Consensus       266 ~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~  345 (550)
T PRK08184        266 IDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAH  345 (550)
T ss_pred             EEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcc
Confidence            345689999999999988             68999999999999999986 7999999999999 59999999873211


Q ss_pred             hhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEc-cceechh-hhhhccCCeEEEe-------CceEEeccccccccc
Q 018384          103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN-GVTMGGG-AGVSIPGTFRVAC-------GKTVFATPETLIGFH  173 (357)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~-G~a~GgG-~~lal~~D~~ia~-------~~a~f~~pe~~~Gl~  173 (357)
                          .+.............++.++..+||||||+|| |+|+||| ++|+++||+||++       ++++|++||+++|++
T Consensus       346 ----~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~  421 (550)
T PRK08184        346 ----KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLY  421 (550)
T ss_pred             ----cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCC
Confidence                11111122233445678889999999999997 9999999 9999999999999       999999999999999


Q ss_pred             CCCcHHHHHhhc-ChHH-HHHH--HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccC
Q 018384          174 PDAGASFYLSHL-PGHL-GEFL--ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLV  249 (357)
Q Consensus       174 p~~g~~~~l~r~-~g~~-a~~l--~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  249 (357)
                      |++|++++|+++ +|.. ++++  +++|++++|+||+++|||++++|++++++.+..                       
T Consensus       422 p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~-----------------------  478 (550)
T PRK08184        422 PMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRI-----------------------  478 (550)
T ss_pred             CCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHH-----------------------
Confidence            999999999988 6998 8886  589999999999999999999999888754443                       


Q ss_pred             CCChhhHHHHHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHH-HHHH
Q 018384          250 YPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LVRE  328 (357)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~-l~~e  328 (357)
                                                                  ++++|+++||.+++.+|++++.....+++++ +.+|
T Consensus       479 --------------------------------------------~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e  514 (550)
T PRK08184        479 --------------------------------------------ALEERASLSPDALTGMEANLRFAGPETMETRIFGRL  514 (550)
T ss_pred             --------------------------------------------HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence                                                        3899999999999999999999999999999 9999


Q ss_pred             HHHHHHhhhcCCCCChhh---hhhheeccCC
Q 018384          329 YRMSLQGVSRLISGDFYE---VSNFQILNKH  356 (357)
Q Consensus       329 ~~~~~~~~~~~~s~d~~e---gi~afl~~r~  356 (357)
                      ...+..+++   ++|.+|   |+++|++||+
T Consensus       515 ~~~~~~~~~---~~d~~e~~~g~~af~ekr~  542 (550)
T PRK08184        515 TAWQNWIFQ---RPNAVGEKGALKVYGTGQK  542 (550)
T ss_pred             HHHHHHHhc---CCcccccchHHHHhccCCC
Confidence            999999988   999999   9999999997

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.2e-46  Score=349.73  Aligned_cols=251  Identities=16%  Similarity=0.160  Sum_probs=201.2

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHc-----CCCceEEEEecC-CCccccccChHHHHHhh
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWEN-----DPNIGFVSMKGS-GRAFCAGGDIVSLYHFM  104 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~-----d~~v~~vvl~g~-g~~F~~G~Dl~~~~~~~  104 (357)
                      ...-.|.++.+++|++|+|| |++.|+||.+|+.+|.+++++++.     |+++++|||||. |++||+|+|++++....
T Consensus        14 ~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~   92 (287)
T PRK08788         14 LSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELI   92 (287)
T ss_pred             cCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhc
Confidence            33445667778999999996 888999999999999999999998     899999999999 79999999999875321


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHh---cCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHH
Q 018384          105 NQGKLEECKDFFRTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFY  181 (357)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~~i~---~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~  181 (357)
                      ...+......+...+...+.++.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~  172 (287)
T PRK08788         93 RAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSF  172 (287)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHH
Confidence            11111111222222233333333   799999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHH
Q 018384          182 LSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI  260 (357)
Q Consensus       182 l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (357)
                      |++++|.. +++|++||+.++|+||+++|||++++|++++.+.+.+                                  
T Consensus       173 l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~----------------------------------  218 (287)
T PRK08788        173 LARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRT----------------------------------  218 (287)
T ss_pred             HHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHH----------------------------------
Confidence            99999999 9999999999999999999999999998887654433                                  


Q ss_pred             HHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCC
Q 018384          261 DIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLI  340 (357)
Q Consensus       261 ~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~  340 (357)
                                                       ++++|+.. |.++...|+..+.....++++.++.|...+....+  .
T Consensus       219 ---------------------------------~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  262 (287)
T PRK08788        219 ---------------------------------FIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQ--L  262 (287)
T ss_pred             ---------------------------------HHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhh--c
Confidence                                             37788876 77777777777766667889999988777765554  1


Q ss_pred             CCChhhhhhhee
Q 018384          341 SGDFYEVSNFQI  352 (357)
Q Consensus       341 s~d~~egi~afl  352 (357)
                      .+.-++-|..|.
T Consensus       263 ~~~~~~~~~~~~  274 (287)
T PRK08788        263 EEKDLRTMERLV  274 (287)
T ss_pred             ccccHHHHHHHH
Confidence            344455555554

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.3e-47  Score=354.62  Aligned_cols=235  Identities=21%  Similarity=0.263  Sum_probs=201.8

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhc-c-----
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-Q-----  106 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~-~-----  106 (357)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++..... .     
T Consensus         3 ~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~   82 (288)
T PRK08290          3 YEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ   82 (288)
T ss_pred             CceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccc
Confidence            4568899999999999999999999999999999999999999999999999999999999999997632110 0     


Q ss_pred             -----------CC-hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccC
Q 018384          107 -----------GK-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP  174 (357)
Q Consensus       107 -----------~~-~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p  174 (357)
                                 .. ..........+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~  161 (288)
T PRK08290         83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-P  161 (288)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-C
Confidence                       00 0011112233456777889999999999999999999999999999999999999999999998 4


Q ss_pred             CCcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCCh
Q 018384          175 DAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK  253 (357)
Q Consensus       175 ~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (357)
                      + ++++++++++|.. +++|++||+.|+|+||+++|||+++||++++.+.+.                            
T Consensus       162 ~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~----------------------------  212 (288)
T PRK08290        162 G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETL----------------------------  212 (288)
T ss_pred             c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHH----------------------------
Confidence            4 4567789999999 999999999999999999999999999887765433                            


Q ss_pred             hhHHHHHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcC-CHHHHHHHHHHHH
Q 018384          254 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMS  332 (357)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~-~l~~~l~~e~~~~  332 (357)
                                                             +++++|++.||.+++.+|++++..... +++++++.|....
T Consensus       213 ---------------------------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~  253 (288)
T PRK08290        213 ---------------------------------------ELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDLH  253 (288)
T ss_pred             ---------------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence                                                   348999999999999999999988765 6999999999998


Q ss_pred             HHhh
Q 018384          333 LQGV  336 (357)
Q Consensus       333 ~~~~  336 (357)
                      ...+
T Consensus       254 ~~~~  257 (288)
T PRK08290        254 QLGH  257 (288)
T ss_pred             HHcc
Confidence            7776

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=7.2e-47  Score=391.57  Aligned_cols=288  Identities=18%  Similarity=0.217  Sum_probs=225.9

Q ss_pred             ceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHH
Q 018384           35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        35 ~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      .+.++. +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .......
T Consensus         7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~   85 (715)
T PRK11730          7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFA-APEEELS   85 (715)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhcc-CCHHHHH
Confidence            567774 78999999999999999999999999999999999999999999999999999999998754211 1122233


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHH
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (357)
                      .+....+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. |++
T Consensus        86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~  165 (715)
T PRK11730         86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE  165 (715)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence            4555667788899999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHH-hhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG-KLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      |++||++++|+||+++||||+++|++++.+.+..++ +++..+ ........   ....+.....      +..      
T Consensus       166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~~~~~~~~---~~~~p~a~~~------~~~------  229 (715)
T PRK11730        166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGK-LDWKARRQ---PKLEPLKLSK------IEA------  229 (715)
T ss_pred             HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcC-CccccccC---cccccccccc------hhH------
Confidence            999999999999999999999999988877666664 322211 00000000   0000000000      000      


Q ss_pred             HHHHHHHHhcccCCCCCchHHHH-HHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          272 VEEIIDSLESEASLINDPWCGST-LRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~-a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                       ...+            .++++. .++...+.|.++ .++++++.+...+++++++.|.+.+..++.   |+|++||+++
T Consensus       230 -~~~~------------~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~d~~egi~a  292 (715)
T PRK11730        230 -MMSF------------TTAKGMVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKLAK---TNVARALVGI  292 (715)
T ss_pred             -HHHH------------HHHHHHHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence             0000            111111 234556666666 688899998888999999999999999997   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+++|.
T Consensus       293 F~~~~~  298 (715)
T PRK11730        293 FLNDQY  298 (715)
T ss_pred             HHHHHH
Confidence            999874

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-46  Score=339.12  Aligned_cols=225  Identities=15%  Similarity=0.121  Sum_probs=199.1

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      .+.+.++.+++|++||||||+ .|++|.+|+.+|.++++.++  +++++|||+|.|++||+|+|++++...     ....
T Consensus         2 ~~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~~   73 (229)
T PRK06213          2 SELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQAA   73 (229)
T ss_pred             cceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHhH
Confidence            456889999999999999985 79999999999999999988  457999999999999999999987531     2223


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ..+......++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|+..++++++|.. +
T Consensus        74 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a  153 (229)
T PRK06213         74 IALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF  153 (229)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence            345556677888999999999999999999999999999999999999 99999999999998888888899999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++++++|++++|+||+++||||+++|++++.+.+.                                             
T Consensus       154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  188 (229)
T PRK06213        154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQ---------------------------------------------  188 (229)
T ss_pred             HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888764333                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS  332 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~  332 (357)
                                            +++++|++.+|.++..+|++++......++++++.|.+.+
T Consensus       189 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~  228 (229)
T PRK06213        189 ----------------------AAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAEF  228 (229)
T ss_pred             ----------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence                                  3488999999999999999999888888888888887653

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-45  Score=346.69  Aligned_cols=217  Identities=20%  Similarity=0.238  Sum_probs=184.6

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccC---C
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---K  108 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~---~  108 (357)
                      .++.+.++.+++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++.......   .
T Consensus         8 ~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~   87 (302)
T PRK08272          8 NLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGG   87 (302)
T ss_pred             CCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccc
Confidence            3567899999999999999999999999999999999999999999999999999999999999999875422100   0


Q ss_pred             ----------------hHHH--HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccc
Q 018384          109 ----------------LEEC--KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI  170 (357)
Q Consensus       109 ----------------~~~~--~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~  170 (357)
                                      ....  ..+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~  167 (302)
T PRK08272         88 AYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRV  167 (302)
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhc
Confidence                            0000  1223455667888999999999999999999999999999999999999999999998


Q ss_pred             cccCCCcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccC
Q 018384          171 GFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLV  249 (357)
Q Consensus       171 Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  249 (357)
                      |.+|+.   ..+++++|.. |++|++||++++|+||+++|||++++|++++.+.+..                       
T Consensus       168 gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~-----------------------  221 (302)
T PRK08272        168 WGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTER-----------------------  221 (302)
T ss_pred             ccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHH-----------------------
Confidence            666643   3467889999 9999999999999999999999999998887654443                       


Q ss_pred             CCChhhHHHHHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc
Q 018384          250 YPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF  318 (357)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~  318 (357)
                                                                  ++++|++.||.+++.+|++++...+
T Consensus       222 --------------------------------------------la~~ia~~~~~a~~~~K~~l~~~~~  246 (302)
T PRK08272        222 --------------------------------------------LVERIAAVPVNQLAMVKLAVNSALL  246 (302)
T ss_pred             --------------------------------------------HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                                                        3788888999999999999987654

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=8.1e-45  Score=340.63  Aligned_cols=274  Identities=17%  Similarity=0.228  Sum_probs=217.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF  122 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l  122 (357)
                      +++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ........+...++.+
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-~~~~~~~~~~~~~~~l  116 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-GNPQEYRQYMRLFNDM  116 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-cChhHHHHHHHHHHHH
Confidence            556999999999999999999999999999999999999999999 79999999998754211 1122233444555678


Q ss_pred             HHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcCCCCC
Q 018384          123 IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLN  201 (357)
Q Consensus       123 ~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~  201 (357)
                      +..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++++++|++++
T Consensus       117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s  196 (360)
T TIGR03200       117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS  196 (360)
T ss_pred             HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence            8889999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHcCccceecCCCCh------------hHHHHHHHhhhcCCH---HHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 018384          202 GAEMMACGLATHYSVSEKL------------PLIEEELGKLVTDDP---SVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (357)
Q Consensus       202 a~eA~~~GLv~~vv~~~~l------------~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (357)
                      |+||+++|||++++|+.++            ++..+.+.++...++   .++++.|..+......               
T Consensus       197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~---------------  261 (360)
T TIGR03200       197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTID---------------  261 (360)
T ss_pred             HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccch---------------
Confidence            9999999999999999887            444555544444333   2455555554432110               


Q ss_pred             cCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018384          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (357)
Q Consensus       267 ~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~e  346 (357)
                           ...+-            +-..+++.+++...|..+.-+++-+|.......+..-..-...+..-+    ..+..+
T Consensus       262 -----~~~l~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  320 (360)
T TIGR03200       262 -----LSLLD------------EAVEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNM----MNEART  320 (360)
T ss_pred             -----HhHHH------------HHHHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhc----ccccch
Confidence                 00000            111235778888999999999999998776666666555555554444    468899


Q ss_pred             hhhheecc
Q 018384          347 VSNFQILN  354 (357)
Q Consensus       347 gi~afl~~  354 (357)
                      |++||-++
T Consensus       321 ~~~~~~~~  328 (360)
T TIGR03200       321 GFRAFNEG  328 (360)
T ss_pred             hhHHHhcc
Confidence            99999994

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=3.6e-46  Score=318.05  Aligned_cols=253  Identities=21%  Similarity=0.269  Sum_probs=230.0

Q ss_pred             CceEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCC
Q 018384           34 NQVLVEG----KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK  108 (357)
Q Consensus        34 ~~i~~~~----~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~  108 (357)
                      ..+.+++    +.||.+|-+|||.+.|+|+.-|+.+|.++++.+..|+.+++|+|.+.- +.||+|.||++-..+    .
T Consensus        27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M----s  102 (291)
T KOG1679|consen   27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM----S  102 (291)
T ss_pred             ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----C
Confidence            4455553    568999999999999999999999999999999999999999999985 899999999997654    4


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      ..+...|...+..++..|.++|.||||+|+|.++|||++|+++||+|+|+++++|+++|++++++|+.|++++|+|++|.
T Consensus       103 ~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~  182 (291)
T KOG1679|consen  103 PSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGV  182 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++|++||+.+++.||..+|||+++|...+-.+.+..                                         
T Consensus       183 alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~-----------------------------------------  221 (291)
T KOG1679|consen  183 ALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQ-----------------------------------------  221 (291)
T ss_pred             HHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHH-----------------------------------------
Confidence            9 9999999999999999999999999976543222111                                         


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                            -+.+++++|..+.|.+++++|..++.+.+.++..++..|..-..+.+.   +.|.-||
T Consensus       222 ----------------------kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~---t~drLeg  276 (291)
T KOG1679|consen  222 ----------------------KALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIP---TKDRLEG  276 (291)
T ss_pred             ----------------------HHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCc---HHHHHHH
Confidence                                  122568999999999999999999999999999999999998889988   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +.+|-|||+
T Consensus       277 laaf~ekr~  285 (291)
T KOG1679|consen  277 LAAFKEKRK  285 (291)
T ss_pred             HHHHHhhcC
Confidence            999999986

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=7.7e-45  Score=376.42  Aligned_cols=285  Identities=18%  Similarity=0.210  Sum_probs=222.5

Q ss_pred             CCceEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCCh
Q 018384           33 CNQVLVEG-KANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        33 ~~~i~~~~-~~~v~~I~ln~p-~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      ...+.++. +++|++|||||| ++.|+||.+|+.+|.+++++++.|+++++|||+|.+ ++||+|+|++++....   ..
T Consensus         4 ~~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~---~~   80 (708)
T PRK11154          4 ASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACK---TA   80 (708)
T ss_pred             CceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccC---CH
Confidence            34567777 689999999999 589999999999999999999999999999999975 8999999999875321   11


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc--eEEecccccccccCCCcHHHHHhhcCh
Q 018384          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPG  187 (357)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (357)
                      .....+......++.++.++||||||+|||+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG  160 (708)
T PRK11154         81 QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG  160 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcC
Confidence            222334445567888999999999999999999999999999999999996  589999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHH-hhccCCCChhhHHHHHHHHHH
Q 018384          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEK-YSDLVYPDKNSVIHRIDIVDK  265 (357)
Q Consensus       188 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  265 (357)
                      .. |++|+++|++++|+||+++||||+++|++++.+.+.++++.....+..+.  +.. +... .+              
T Consensus       161 ~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~--~~~~~~~~-~p--------------  223 (708)
T PRK11154        161 VSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLP--VRERLLEG-NP--------------  223 (708)
T ss_pred             HHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCC--chhhhccc-Cc--------------
Confidence            99 99999999999999999999999999998887666655422100000000  000 0000 00              


Q ss_pred             HcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018384          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  345 (357)
Q Consensus       266 ~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~  345 (357)
                          .....++            +++.+.+.+-.+....|+..+|++++.+...+++++++.|.+.+..++.   |+|++
T Consensus       224 ----~~~~~~~------------~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~  284 (708)
T PRK11154        224 ----LGRALLF------------KQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAM---TPESA  284 (708)
T ss_pred             ----hhHHHHH------------HHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHH
Confidence                0000011            1111122333344457999999999999888999999999999999997   99999


Q ss_pred             hhhhheeccCC
Q 018384          346 EVSNFQILNKH  356 (357)
Q Consensus       346 egi~afl~~r~  356 (357)
                      ||+++|+-+|.
T Consensus       285 ~~~~aF~~~~~  295 (708)
T PRK11154        285 ALRSIFFATTE  295 (708)
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=2.9e-44  Score=371.33  Aligned_cols=277  Identities=19%  Similarity=0.223  Sum_probs=219.1

Q ss_pred             EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEE-ecCCCccccccChHHHHHhhccCChHHHHHHH
Q 018384           39 EGKANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGFVSM-KGSGRAFCAGGDIVSLYHFMNQGKLEECKDFF  116 (357)
Q Consensus        39 ~~~~~v~~I~ln~p-~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl-~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~  116 (357)
                      +.+++|++|||||| ++.|+||.+|+.+|.+++++++.|+++++||| +|.|++||+|+|++++...   ........+.
T Consensus         6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~---~~~~~~~~~~   82 (699)
T TIGR02440         6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC---QTAGEAKALA   82 (699)
T ss_pred             EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc---CChhHHHHHH
Confidence            45689999999999 68999999999999999999999999999986 6788999999999987431   1122233444


Q ss_pred             HHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc--eEEecccccccccCCCcHHHHHhhcChHH-HHHH
Q 018384          117 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (357)
Q Consensus       117 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (357)
                      ...+.++..+.++||||||+|||+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|++++|.. +++|
T Consensus        83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~l  162 (699)
T TIGR02440        83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDM  162 (699)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHH
Confidence            55677888999999999999999999999999999999999986  79999999999999999999999999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhh--cCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLV--TDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +++|+.++|+||+++||||+++|++++.+.+..+++..  ...|....   ..+...                   +...
T Consensus       163 lltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~---~~~~~~-------------------~~~a  220 (699)
T TIGR02440       163 ILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQ---ERLLEG-------------------TPLG  220 (699)
T ss_pred             HHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccch---hhhccc-------------------Cchh
Confidence            99999999999999999999999988877666554310  00000000   000000                   0000


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                      ...+.+            ++.+.+.+-......|...+|++++.+...+++++++.|.+.+..++.   |+|+++++++|
T Consensus       221 ~~~~~~------------~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~~~~f  285 (699)
T TIGR02440       221 RALLFD------------QAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVM---TPESAALRSIF  285 (699)
T ss_pred             HHHHHH------------HHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence            011111            111223333455567888899999999999999999999999999998   99999999999


Q ss_pred             eccC
Q 018384          352 ILNK  355 (357)
Q Consensus       352 l~~r  355 (357)
                      +-++
T Consensus       286 ~~~~  289 (699)
T TIGR02440       286 FATT  289 (699)
T ss_pred             HHHH
Confidence            8654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-45  Score=316.80  Aligned_cols=255  Identities=21%  Similarity=0.307  Sum_probs=221.9

Q ss_pred             CCceEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhc---c
Q 018384           33 CNQVLVEG---KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN---Q  106 (357)
Q Consensus        33 ~~~i~~~~---~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~---~  106 (357)
                      +..+.+.+   +..|..+.||||.|.|++|..|+.|+.++++.+..||++++|||+|+|++||+|+|+..+.....   +
T Consensus        18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~   97 (292)
T KOG1681|consen   18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE   97 (292)
T ss_pred             cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence            44444543   45699999999999999999999999999999999999999999999999999999876543211   1


Q ss_pred             C-----ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHH
Q 018384          107 G-----KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFY  181 (357)
Q Consensus       107 ~-----~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~  181 (357)
                      +     ......++...++..+..|.+||||||++|+|+|+|+|+.|..+||+|+|+++|.|+.-|+.+|+..+.|...+
T Consensus        98 ~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~R  177 (292)
T KOG1681|consen   98 GDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNR  177 (292)
T ss_pred             cchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhh
Confidence            1     12345566777888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcChHH--HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHH
Q 018384          182 LSHLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR  259 (357)
Q Consensus       182 l~r~~g~~--a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (357)
                      ||..+|.+  ++++.+|++.++|.||++.|||.+|+|+.+-. ....+                                
T Consensus       178 lpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~~l--------------------------------  224 (292)
T KOG1681|consen  178 LPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNGAL--------------------------------  224 (292)
T ss_pred             hhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-HhhhH--------------------------------
Confidence            99999965  99999999999999999999999999864322 11111                                


Q ss_pred             HHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcC
Q 018384          260 IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRL  339 (357)
Q Consensus       260 ~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~  339 (357)
                                                       .+|..|+..+|.+++.||+.++.+++.+.++.|.+=.......+.  
T Consensus       225 ---------------------------------~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~--  269 (292)
T KOG1681|consen  225 ---------------------------------PMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLL--  269 (292)
T ss_pred             ---------------------------------HHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHH--
Confidence                                             358899999999999999999999999999999988888777776  


Q ss_pred             CCCChhhhhhheeccCC
Q 018384          340 ISGDFYEVSNFQILNKH  356 (357)
Q Consensus       340 ~s~d~~egi~afl~~r~  356 (357)
                       |+|+.+.+.|.++|++
T Consensus       270 -s~Dl~~av~a~m~k~k  285 (292)
T KOG1681|consen  270 -SDDLVKAVMAQMEKLK  285 (292)
T ss_pred             -HHHHHHHHHHHhhcCC
Confidence             9999999999998764

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=6.1e-43  Score=361.62  Aligned_cols=288  Identities=16%  Similarity=0.212  Sum_probs=221.9

Q ss_pred             ceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHH
Q 018384           35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        35 ~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      .+.++. +++|++|+||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++..... .......
T Consensus         7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~   85 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFA-LPDAELI   85 (714)
T ss_pred             eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhccc-CCHHHHH
Confidence            567774 78999999999999999999999999999999999999999999999999999999998754211 1122233


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHH
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (357)
                      .+....+.++.+|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. |++
T Consensus        86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~  165 (714)
T TIGR02437        86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE  165 (714)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence            4455567788899999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhh-hcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKL-VTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      |+++|++++|+||+++||||+++|++++.+.+..+++. ....+. .....       .+......  ...+..++..  
T Consensus       166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~-~~~~~-------~~~~~~~~--~~~~~~~~~~--  233 (714)
T TIGR02437       166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLD-WKAKR-------QPKLEPLK--LSKIEAMMSF--  233 (714)
T ss_pred             HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCc-ccccC-------CCCccccc--ccchHHHHHH--
Confidence            99999999999999999999999988887766655322 111000 00000       00000000  0000111000  


Q ss_pred             HHHHHHHHhcccCCCCCchHHH-HHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          272 VEEIIDSLESEASLINDPWCGS-TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~-~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                       +++.+ ..++-..+-| +...+.+.+..+...+++++++.|.+.|..++.   |++.+.++..
T Consensus       234 -----------------~~~~~~~~~~~~~~~p-ap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~---s~~a~~l~~~  292 (714)
T TIGR02437       234 -----------------TTAKGMVAQVAGPHYP-APMTAVKTIEKAARFGRDKALEIEAKGFVKLAK---TSEAKALIGL  292 (714)
T ss_pred             -----------------HHHHHHHHHhhcCCCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                             11112 2223333333 444466788888888999999999999999998   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+.+|.
T Consensus       293 ff~~r~  298 (714)
T TIGR02437       293 FLNDQY  298 (714)
T ss_pred             HhhhHh
Confidence            998764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=1.6e-42  Score=359.30  Aligned_cols=299  Identities=16%  Similarity=0.153  Sum_probs=216.4

Q ss_pred             CCceEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEE-EEecCCCccccccChHHHHHhhccCChH
Q 018384           33 CNQVLVEGKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFV-SMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~v-vl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      ++.+.++++++|++||||||+ +.|+||.+|+.+|.+++++++.|+++++| |+||.|++||+|+|++++...   ....
T Consensus        12 ~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~---~~~~   88 (737)
T TIGR02441        12 RTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAAC---KTAQ   88 (737)
T ss_pred             CCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhcc---CChH
Confidence            356888999999999999998 58999999999999999999999999965 679999999999999988531   1223


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc--eEEecccccccccCCCcHHHHHhhcChH
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      ....+....+.++.++.++||||||+|||+|+|||++|+++||+||++++  ++|++||+++|++|++|++++|+|++|.
T Consensus        89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~  168 (737)
T TIGR02441        89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGV  168 (737)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCH
Confidence            33445556677889999999999999999999999999999999999987  5899999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCC--CC---hhHH-HHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHH
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVS--EK---LPLI-EEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~--~~---l~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (357)
                      . |++|+++|++++|+||+++||||+|+|+  ++   +++. .+.+.+.+......+...+...+........ ...   
T Consensus       169 ~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~-~~~---  244 (737)
T TIGR02441       169 PAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHK-ITQ---  244 (737)
T ss_pred             HHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCc-cch---
Confidence            8 9999999999999999999999999986  22   2111 1111111111111111111001100000000 000   


Q ss_pred             HHHHHcCC-CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCC
Q 018384          262 IVDKCFGL-DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLI  340 (357)
Q Consensus       262 ~~~~~~~~-~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~  340 (357)
                         ...+. .....+++...            +.+.+-.+....+...+.+.+..+...+++++++.|.+.|..++.   
T Consensus       245 ---~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~---  306 (737)
T TIGR02441       245 ---YVMTNPFVRQQVYKTAE------------DKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSM---  306 (737)
T ss_pred             ---hhcccchhHHHHHHHHH------------HHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---
Confidence               00000 00111111111            112222333244555577888888888999999999999999998   


Q ss_pred             CCChhhhhhheeccCC
Q 018384          341 SGDFYEVSNFQILNKH  356 (357)
Q Consensus       341 s~d~~egi~afl~~r~  356 (357)
                      |+..+.-+..|+-+|.
T Consensus       307 s~~a~al~~~f~~~~~  322 (737)
T TIGR02441       307 TFESKALIGLFHGQTD  322 (737)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999876653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=1.7e-42  Score=315.51  Aligned_cols=185  Identities=16%  Similarity=0.150  Sum_probs=157.3

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCce-EEEEecCCCccccccChHHHHHhhccCChHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG-FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~-~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (357)
                      +.++++++|++|+||||++ |+||.+|+.+|.+++++++.|++++ +||++|.|++||+|+|++++...  .........
T Consensus         2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~   78 (239)
T PLN02267          2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL   78 (239)
T ss_pred             ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence            5678899999999999985 9999999999999999999998865 88889999999999999986421  111222233


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEe-CceEEecccccccccCCCcHHHHHhhcChHH-H-H
Q 018384          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G-E  191 (357)
Q Consensus       115 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a-~  191 (357)
                      +...+..++.++.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++.++++++|.. + +
T Consensus        79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~  158 (239)
T PLN02267         79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR  158 (239)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence            44556678889999999999999999999999999999999998 5689999999999974444578899999987 7 6


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCC-CChhHH
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVS-EKLPLI  223 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~  223 (357)
                      +|+++|++++|+||+++|||++++|+ +++.+.
T Consensus       159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~  191 (239)
T PLN02267        159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEA  191 (239)
T ss_pred             HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHH
Confidence            89999999999999999999999985 466543

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-42  Score=305.80  Aligned_cols=254  Identities=22%  Similarity=0.285  Sum_probs=228.2

Q ss_pred             CCceEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln-~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      +..+.++++|++.+|.+| ||++.|+++.+++.++..+|..+..|+++..++++|.|++||+|.|+..+.....++..+.
T Consensus         6 ~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~   85 (266)
T KOG0016|consen    6 YREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEE   85 (266)
T ss_pred             ccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccccc
Confidence            567889999999999999 9999999999999999999999999999999999999999999999998876543332222


Q ss_pred             H---HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          112 C---KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       112 ~---~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      .   .++...+...+..+..+|||+||.|||+++|.|..+...||+++|.|+++|..|+.++|..|++|+++.+|+++|.
T Consensus        86 ~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~  165 (266)
T KOG0016|consen   86 SDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGS  165 (266)
T ss_pred             chhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhch
Confidence            2   2333444457788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . |.+|++.|++++|+||.+.|||+++++.+.+.+.+.                                          
T Consensus       166 ~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~------------------------------------------  203 (266)
T KOG0016|consen  166 ASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVL------------------------------------------  203 (266)
T ss_pred             hhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999988764322                                          


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                               +.++++++.+|.+++..|++++......+..+.+.|.+.....|.   ++|+-+.
T Consensus       204 -------------------------~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~---s~e~~~~  255 (266)
T KOG0016|consen  204 -------------------------KKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWV---SAECLAR  255 (266)
T ss_pred             -------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcc---ChHHHHH
Confidence                                     237889999999999999999999999999999999999999998   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      ++.|+.++.
T Consensus       256 ~~~~~~~~~  264 (266)
T KOG0016|consen  256 FKQYLSKKR  264 (266)
T ss_pred             HHHHhcccc
Confidence            999988753

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=9e-40  Score=289.03  Aligned_cols=190  Identities=33%  Similarity=0.513  Sum_probs=173.6

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      +.++++++|++|+||+|++.|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|+|+.++......  ......+
T Consensus         1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~--~~~~~~~   78 (195)
T cd06558           1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDA--GEEARAF   78 (195)
T ss_pred             CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccccc--chhHHHH
Confidence            46788899999999999989999999999999999999999999999999999999999999998654211  1135567


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHH
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (357)
                      ...++.++..+..+||||||++||+|+|+|+.++++||+||++++++|++||+++|++|++|++++|++++|.. +.+++
T Consensus        79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~  158 (195)
T cd06558          79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL  158 (195)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence            78888999999999999999999999999999999999999999999999999999999999999999999988 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL  227 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l  227 (357)
                      ++|++++++||+++|||+++++.+++.+.+..+
T Consensus       159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~  191 (195)
T cd06558         159 LTGRRISAEEALELGLVDEVVPDEELLAAALEL  191 (195)
T ss_pred             HcCCccCHHHHHHcCCCCeecChhHHHHHHHHH
Confidence            999999999999999999999988876655444

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=5.1e-41  Score=286.97  Aligned_cols=252  Identities=19%  Similarity=0.275  Sum_probs=202.6

Q ss_pred             CCCceEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecC--C-CccccccChHHHHHhhccC
Q 018384           32 LCNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--G-RAFCAGGDIVSLYHFMNQG  107 (357)
Q Consensus        32 ~~~~i~~~~~-~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~--g-~~F~~G~Dl~~~~~~~~~~  107 (357)
                      .++.|++++. ++|+.|+||||+.+|++.+....||.++|..+..|++|.+|||||.  | ++||+|+|-+.-.....-.
T Consensus        16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~   95 (282)
T COG0447          16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYV   95 (282)
T ss_pred             CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCcc
Confidence            4677899988 9999999999999999999999999999999999999999999985  5 7999999976533210000


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcCh
Q 018384          108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  187 (357)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (357)
                      +.+....+  ..-.+-+.|..+||||||.|+|+++|||-.|-+.||+.||+++|+|+....++|-+-++.++..|.|++|
T Consensus        96 ~d~~~~rL--nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG  173 (282)
T COG0447          96 DDDGIPRL--NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG  173 (282)
T ss_pred             CCccCccc--chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence            01111111  1234556788999999999999999999999999999999999999999999999988778888999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 018384          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (357)
Q Consensus       188 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (357)
                      .. |+++.+.++.++|+||+++|+||.|||-++|++...                                         
T Consensus       174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v-----------------------------------------  212 (282)
T COG0447         174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETV-----------------------------------------  212 (282)
T ss_pred             hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHH-----------------------------------------
Confidence            99 999999999999999999999999999999875332                                         


Q ss_pred             cCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018384          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (357)
Q Consensus       267 ~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~e  346 (357)
                                            +|    ++.|.++||.+++..|..+|..-+ ++. ++. |+..-..++. -.+++.+|
T Consensus       213 ----------------------~W----~~E~l~kSP~AlR~LK~Afnad~D-Gla-G~q-~~ag~at~L~-YmTdEa~E  262 (282)
T COG0447         213 ----------------------QW----AREMLAKSPTALRMLKAAFNADCD-GLA-GLQ-ELAGNATLLY-YMTDEAQE  262 (282)
T ss_pred             ----------------------HH----HHHHHhcChHHHHHHHHHhcCCCc-hhh-HHH-HhcccceEEE-Eechhhhh
Confidence                                  33    788899999999999999885432 221 111 2211111110 12899999


Q ss_pred             hhhheeccCC
Q 018384          347 VSNFQILNKH  356 (357)
Q Consensus       347 gi~afl~~r~  356 (357)
                      |-.||++||+
T Consensus       263 Gr~AF~eKR~  272 (282)
T COG0447         263 GRDAFLEKRK  272 (282)
T ss_pred             hHHHHhhccC
Confidence            9999999996

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.6e-39  Score=323.86  Aligned_cols=198  Identities=14%  Similarity=0.157  Sum_probs=166.9

Q ss_pred             cccCCCceEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHH-cCCCceEEEEecC-CCccccccC
Q 018384           29 TDDLCNQVLVEGKANSRMAILNRPS----------ALNALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGS-GRAFCAGGD   96 (357)
Q Consensus        29 ~~~~~~~i~~~~~~~v~~I~ln~p~----------~~Nal~~~~~~~L~~~l~~~~-~d~~v~~vvl~g~-g~~F~~G~D   96 (357)
                      .|+.++++.++++++|++||||||+          +.|++|.+|+.+|.+++++++ .|+++++|||||. |++||+|+|
T Consensus         6 ~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~D   85 (546)
T TIGR03222         6 EPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGAN   85 (546)
T ss_pred             CCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcC
Confidence            3445678999999999999999975          899999999999999999999 7899999999997 589999999


Q ss_pred             hHHHHHhhccCChHHHHHHH-HHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc--eEEeccccc-ccc
Q 018384           97 IVSLYHFMNQGKLEECKDFF-RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGF  172 (357)
Q Consensus        97 l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl  172 (357)
                      ++++...... .......+. .....+...+.++||||||+|||+|+|||++|+++||+||++++  ++|++||++ +|+
T Consensus        86 L~~~~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl  164 (546)
T TIGR03222        86 IFMLGLSTHA-WKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV  164 (546)
T ss_pred             HHHHhccccc-hhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc
Confidence            9987431110 011111111 11233555677899999999999999999999999999999986  799999997 999


Q ss_pred             cCCCcHHHHHh--hcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 018384          173 HPDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL  227 (357)
Q Consensus       173 ~p~~g~~~~l~--r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l  227 (357)
                      +|++|+..+++  +++|.. |++|+++|++++|+||+++|||+++||++++.+.+.++
T Consensus       165 ~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~l  222 (546)
T TIGR03222       165 LPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAER  222 (546)
T ss_pred             CCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHH
Confidence            99999998887  689998 99999999999999999999999999998887665555

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-38  Score=268.93  Aligned_cols=249  Identities=19%  Similarity=0.215  Sum_probs=215.0

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      ....++.+++|..|+||+|++.|.|+.+|+.+|.+.|....++.++|+|||+..|+.||+|.||+++.+.   ...+...
T Consensus        32 ~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e---~g~d~ha  108 (287)
T KOG1682|consen   32 DLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNE---PGSDIHA  108 (287)
T ss_pred             cccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcC---ccchHHH
Confidence            4456677899999999999999999999999999999998888899999999999999999999998752   3344556


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHH
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  192 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~  192 (357)
                      ..+....+++.-|.++|+|||+-|||.+..+|+.|..+||++||+++++|..|...+|++...-+. .|.|.++.. +.+
T Consensus       109 evFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~  187 (287)
T KOG1682|consen  109 EVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAY  187 (287)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHH
Confidence            677778889999999999999999999999999999999999999999999999999997554333 378889988 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCH
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  272 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (357)
                      |++||.+|+++||+..|||+++||+++++...+.                                              
T Consensus       188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~----------------------------------------------  221 (287)
T KOG1682|consen  188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEE----------------------------------------------  221 (287)
T ss_pred             HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999998743332                                              


Q ss_pred             HHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       273 e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                                           +...|-..|...+.+-|+.+......+..+++....+....-++   -.|.+|||.+|+
T Consensus       222 ---------------------i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~q---l~d~kegiasf~  277 (287)
T KOG1682|consen  222 ---------------------ITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQ---LGDTKEGIASFF  277 (287)
T ss_pred             ---------------------HHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc---ccchHHHHHHHh
Confidence                                 36677777788888899999888777777777766666555554   899999999999


Q ss_pred             ccCC
Q 018384          353 LNKH  356 (357)
Q Consensus       353 ~~r~  356 (357)
                      +||-
T Consensus       278 ~krp  281 (287)
T KOG1682|consen  278 EKRP  281 (287)
T ss_pred             ccCC
Confidence            9983

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2.9e-38  Score=315.80  Aligned_cols=196  Identities=14%  Similarity=0.168  Sum_probs=164.5

Q ss_pred             cCCCceEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHH-cCCCceEEEEecCC-CccccccChH
Q 018384           31 DLCNQVLVEGKANSRMAILNRP-------S---ALNALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGSG-RAFCAGGDIV   98 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p-------~---~~Nal~~~~~~~L~~~l~~~~-~d~~v~~vvl~g~g-~~F~~G~Dl~   98 (357)
                      ..++.+.++++++|++||||||       +   +.|+||.+|+.+|.+++++++ .|+++++|||||.+ ++||+|+|++
T Consensus        12 ~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~   91 (550)
T PRK08184         12 SQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIF   91 (550)
T ss_pred             CCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHH
Confidence            3467799999999999999965       3   899999999999999999999 78999999999985 8999999999


Q ss_pred             HHHHhhccCChHHHHHHHHH-HHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc--eEEeccccc-ccccC
Q 018384           99 SLYHFMNQGKLEECKDFFRT-LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGFHP  174 (357)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~p  174 (357)
                      .+...... .......+... ...+...+.++||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|++|
T Consensus        92 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P  170 (550)
T PRK08184         92 MLGGSSHA-WKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLP  170 (550)
T ss_pred             hHhccccc-hhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCC
Confidence            87432110 00111111111 122445677899999999999999999999999999999987  899999997 99999


Q ss_pred             CCcHHHHHh--hcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 018384          175 DAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL  227 (357)
Q Consensus       175 ~~g~~~~l~--r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l  227 (357)
                      ++|++++++  +++|.. +.+|++||+.++|+||+++|||++++|++++.+.+.++
T Consensus       171 ~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~  226 (550)
T PRK08184        171 GTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAER  226 (550)
T ss_pred             CcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHH
Confidence            999999998  779998 99999999999999999999999999998887655544

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.82  E-value=4.6e-20  Score=160.69  Aligned_cols=141  Identities=16%  Similarity=0.105  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 018384           61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  140 (357)
Q Consensus        61 ~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~  140 (357)
                      -.+.+|.++++++..|+++++|||++    +|.|+|+....                .+..++..+..++|||||+++|.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G~   81 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGGN   81 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECCc
Confidence            35789999999999999999999997    68898876421                22345666778999999999999


Q ss_pred             eechhhhhhccCCeEEEeCceEEecccccccccCCCcHHH--------HHhhcCh--HH-HHHHHhcCCCCCHHHHHHcC
Q 018384          141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF--------YLSHLPG--HL-GEFLALTGAKLNGAEMMACG  209 (357)
Q Consensus       141 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~l~r~~g--~~-a~~l~ltG~~i~a~eA~~~G  209 (357)
                      |.|+|+.|+++||+++++++++|+.+.+..+..+......        .+++..|  .. ..+++..|..++|++|++.|
T Consensus        82 a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~G  161 (177)
T cd07014          82 AASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANG  161 (177)
T ss_pred             hhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcC
Confidence            9999999999999999999999999987766433222222        3444445  55 78888999999999999999


Q ss_pred             ccceecCCCChh
Q 018384          210 LATHYSVSEKLP  221 (357)
Q Consensus       210 Lv~~vv~~~~l~  221 (357)
                      |||++.+.+++.
T Consensus       162 LVD~v~~~~e~~  173 (177)
T cd07014         162 LVDSLGSFDDAV  173 (177)
T ss_pred             CcccCCCHHHHH
Confidence            999999866653

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.80  E-value=3.3e-19  Score=156.49  Aligned_cols=148  Identities=13%  Similarity=0.080  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHH
Q 018384           45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  124 (357)
Q Consensus        45 ~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (357)
                      ++|.++.     .++..+...+.+.|+.+..|+ ++.|+|.=.    |.|+++..-                   ..++.
T Consensus         2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~-------------------~~i~~   52 (187)
T cd07020           2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDST-------------------REIVQ   52 (187)
T ss_pred             EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHH-------------------HHHHH
Confidence            5666653     366777889999999998765 777777622    445554321                   12445


Q ss_pred             HHhcCCCcEEEEEc---cceechhhhhhccCCeEEEeCceEEecccccccccCCC--------------cHHHHHhhcCh
Q 018384          125 LLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDA--------------GASFYLSHLPG  187 (357)
Q Consensus       125 ~i~~~~kPvIa~v~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~--------------g~~~~l~r~~g  187 (357)
                      .+..+||||||+|+   |+|.|||+.|+++||++|++++++|+.+++..+..+..              +....+++..|
T Consensus        53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G  132 (187)
T cd07020          53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG  132 (187)
T ss_pred             HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            56789999999999   99999999999999999999999999999985544432              23456788888


Q ss_pred             H--H-HHHHHhcCCCCCHHHHHHcCccceecCCC-Chh
Q 018384          188 H--L-GEFLALTGAKLNGAEMMACGLATHYSVSE-KLP  221 (357)
Q Consensus       188 ~--~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~-~l~  221 (357)
                      .  . +.+++++|+.++++||+++||||++++++ ++.
T Consensus       133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~  170 (187)
T cd07020         133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELL  170 (187)
T ss_pred             CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHH
Confidence            6  5 88999999999999999999999999875 443

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.66  E-value=2.7e-16  Score=140.65  Aligned_cols=103  Identities=17%  Similarity=0.203  Sum_probs=81.5

Q ss_pred             CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHH
Q 018384           43 NSRMAILNRP--SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (357)
Q Consensus        43 ~v~~I~ln~p--~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (357)
                      +|++|.++-|  +..+..+.-++.+|.++|+.+..||++++|||+    .||.|+|+..+..                +.
T Consensus         1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~----------------~~   60 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV----------------IR   60 (211)
T ss_pred             CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH----------------HH
Confidence            3555555533  122333455689999999999999999999998    6999999876421                12


Q ss_pred             HHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEec
Q 018384          121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT  165 (357)
Q Consensus       121 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~  165 (357)
                      ..+..+..++|||||+++|.|.|+|+.|+++||++++++++.|+.
T Consensus        61 ~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs  105 (211)
T cd07019          61 AELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS  105 (211)
T ss_pred             HHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence            345667788999999999999999999999999999999988863

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.56  E-value=3e-14  Score=122.03  Aligned_cols=134  Identities=14%  Similarity=0.130  Sum_probs=103.5

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 018384           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (357)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v  137 (357)
                      ++..++.+|.+.|+.++.|+++++|+|..    .|.|+|+...                   ..+...+..++||||+.+
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~   64 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-------------------MNIVDALQASRKPVIAYV   64 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence            55688999999999999999999999986    4777776432                   123445667889999999


Q ss_pred             ccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHH------HH----Hhh---------cChHH-HHHHHhcC
Q 018384          138 NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS------FY----LSH---------LPGHL-GEFLALTG  197 (357)
Q Consensus       138 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~------~~----l~r---------~~g~~-a~~l~ltG  197 (357)
                      +|.|.++|+.|+++||.|++.+++.|++..+..+.....+-.      ..    ..+         ..... ..+++..|
T Consensus        65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~  144 (161)
T cd00394          65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD  144 (161)
T ss_pred             CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence            999999999999999999999999999998876654322000      01    111         12223 46677889


Q ss_pred             CCCCHHHHHHcCcccee
Q 018384          198 AKLNGAEMMACGLATHY  214 (357)
Q Consensus       198 ~~i~a~eA~~~GLv~~v  214 (357)
                      ..++++||++.||||++
T Consensus       145 ~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         145 LVLTAQEALEYGLVDAL  161 (161)
T ss_pred             cEEcHHHHHHcCCcCcC
Confidence            99999999999999985

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.55  E-value=5e-14  Score=126.32  Aligned_cols=96  Identities=19%  Similarity=0.154  Sum_probs=74.1

Q ss_pred             cCCCCCCC-CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhc
Q 018384           50 NRPSALNA-LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGT  128 (357)
Q Consensus        50 n~p~~~Na-l~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  128 (357)
                      ++|...|+ ++..++.+|.++|+.++.|+++++|||+.    +|.|+++...                ..+...+..+..
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~~~l~~~~~   72 (214)
T cd07022          13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELADAIRAARA   72 (214)
T ss_pred             CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHHHHHHHHhc
Confidence            34444454 45789999999999999999999999975    5667665432                112223333334


Q ss_pred             CCCcEEEEEccceechhhhhhccCCeEEEeCceEEecc
Q 018384          129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP  166 (357)
Q Consensus       129 ~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~p  166 (357)
                       +|||||+++|.|.|+|+.|+++||++++++++.|+..
T Consensus        73 -~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i  109 (214)
T cd07022          73 -GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI  109 (214)
T ss_pred             -CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence             6999999999999999999999999999999987654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=99.54  E-value=1.5e-14  Score=117.05  Aligned_cols=91  Identities=40%  Similarity=0.717  Sum_probs=82.1

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhc
Q 018384          259 RIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSR  338 (357)
Q Consensus       259 ~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~  338 (357)
                      ....|++||+.+++++|++.|+.    ...+|+.++++.|.++||+|+++|.++++++...+++++++.|+++..+++. 
T Consensus         5 ~~~~I~~~F~~~s~~eI~~~L~~----~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~-   79 (118)
T PF13766_consen    5 HLEAIDRCFSADSVEEIIEALEA----DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMR-   79 (118)
T ss_dssp             CHHHHHHHTTSSSHHHHHHHHHH----HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHc----cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc-
Confidence            45689999999999999999998    3679999999999999999999999999999999999999999999999998 


Q ss_pred             CCCCChhhhhhheeccCC
Q 018384          339 LISGDFYEVSNFQILNKH  356 (357)
Q Consensus       339 ~~s~d~~egi~afl~~r~  356 (357)
                        .+||.|||||.|+||+
T Consensus        80 --~~DF~EGVRA~LIDKd   95 (118)
T PF13766_consen   80 --HPDFAEGVRALLIDKD   95 (118)
T ss_dssp             --CSCHHHHHHHHTTS--
T ss_pred             --cchHHHHHHHHHhcCC
Confidence              8999999999999985

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.50  E-value=1.2e-13  Score=123.28  Aligned_cols=153  Identities=18%  Similarity=0.136  Sum_probs=107.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |++|.++.+=...  .+.++.+|.++|+.+..|+++++|+|++    +|.|+|+....                .+...+
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~----------------~i~~~i   59 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE----------------EIYREI   59 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH----------------HHHHHH
Confidence            5666666432101  3689999999999999999999999998    58898886421                123345


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccc------------cccccCCCc--------------
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDAG--------------  177 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~g--------------  177 (357)
                      ..+..++|||||+++|.|.|+|+.|+++||.+++++.+.|+..-+            ++|+-+..-              
T Consensus        60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~  139 (208)
T cd07023          60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP  139 (208)
T ss_pred             HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence            667778999999999999999999999999999999998764322            123322111              


Q ss_pred             H----HHHHhhcCh-----------------HHHHHHHhcCCCCCHHHHHHcCccceecCCC
Q 018384          178 A----SFYLSHLPG-----------------HLGEFLALTGAKLNGAEMMACGLATHYSVSE  218 (357)
Q Consensus       178 ~----~~~l~r~~g-----------------~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~  218 (357)
                      .    ...+..++.                 .....-++.|..+++++|++.||||++...+
T Consensus       140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~  201 (208)
T cd07023         140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLD  201 (208)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHH
Confidence            0    011111111                 1112235688999999999999999997533

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.50  E-value=1.6e-13  Score=139.69  Aligned_cols=170  Identities=17%  Similarity=0.220  Sum_probs=120.2

Q ss_pred             EeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHH
Q 018384           40 GKANSRMAILNRPS--ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR  117 (357)
Q Consensus        40 ~~~~v~~I~ln~p~--~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~  117 (357)
                      .++.|++|+++.+-  ..|..+......+.+.|+.+..|+++++|||+-.    |.|++....                +
T Consensus       306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------------e  365 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------------E  365 (584)
T ss_pred             CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------------H
Confidence            46789999998763  2344444456678889999999999999999965    223322110                1


Q ss_pred             HHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEE------eccc------ccccccCCCcHHHHHhh-
Q 018384          118 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF------ATPE------TLIGFHPDAGASFYLSH-  184 (357)
Q Consensus       118 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f------~~pe------~~~Gl~p~~g~~~~l~r-  184 (357)
                      .+.+.+..+...+||||+.++|.|.+||+.++++||.+++++.+.+      +.+.      .++|+.|+...+..+.. 
T Consensus       366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~  445 (584)
T TIGR00705       366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV  445 (584)
T ss_pred             HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence            1122334455678999999999999999999999999999999876      5553      57898887665543332 


Q ss_pred             ---------------------------c------ChHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhh
Q 018384          185 ---------------------------L------PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLV  231 (357)
Q Consensus       185 ---------------------------~------~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~  231 (357)
                                                 .      +.....+.+.+|+.++++||+++||||++-   .++++.+..++++
T Consensus       446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~~~Ai~~a~~la  522 (584)
T TIGR00705       446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GLDEAVAKAAKLA  522 (584)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CHHHHHHHHHHHc
Confidence                                       2      222256678899999999999999999994   4554444444443


Q ss_pred             c
Q 018384          232 T  232 (357)
Q Consensus       232 ~  232 (357)
                      .
T Consensus       523 ~  523 (584)
T TIGR00705       523 H  523 (584)
T ss_pred             C
Confidence            3

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.48  E-value=1.7e-13  Score=117.36  Aligned_cols=128  Identities=15%  Similarity=0.168  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 018384           61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  140 (357)
Q Consensus        61 ~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~  140 (357)
                      .+...+.+.|+.+..+..+ .+.|.+.|+...+|                         ..++..|..+|+|||+.++|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~~-------------------------~~i~~~i~~~~~pvi~~v~g~   68 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFAG-------------------------LAIYNALKRHKGKVTVKIDGL   68 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHHH-------------------------HHHHHHHHhcCCCEEEEEcch
Confidence            4667888888888876333 44455544332221                         234556777899999999999


Q ss_pred             eechhhhhhccCCeEEEeCceEEecccccccccCCCcH---------------HHHHhhcCh--HH-HHHHHhcCCCCCH
Q 018384          141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA---------------SFYLSHLPG--HL-GEFLALTGAKLNG  202 (357)
Q Consensus       141 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~r~~g--~~-a~~l~ltG~~i~a  202 (357)
                      |.|+|+.++++||+|++++++.|+++....|..+....               ...+.+..|  .. ...++.++..+++
T Consensus        69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a  148 (160)
T cd07016          69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA  148 (160)
T ss_pred             HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence            99999999999999999999999998877665443221               223666677  45 6777777788999


Q ss_pred             HHHHHcCcccee
Q 018384          203 AEMMACGLATHY  214 (357)
Q Consensus       203 ~eA~~~GLv~~v  214 (357)
                      +||+++||||+|
T Consensus       149 ~eA~~~GliD~v  160 (160)
T cd07016         149 QEAVELGFADEI  160 (160)
T ss_pred             HHHHHcCCCCcC
Confidence            999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.41  E-value=2.1e-12  Score=115.16  Aligned_cols=148  Identities=17%  Similarity=0.163  Sum_probs=102.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |++|+++.+=.      ....+|.++|+.+..|+++++|||++.    |.|+++...                   ..+.
T Consensus         2 v~vi~i~g~i~------~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------------~~l~   52 (207)
T TIGR00706         2 IAILPVSGAIA------VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------------EEIY   52 (207)
T ss_pred             EEEEEEEEEEe------cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------------HHHH
Confidence            56666664421      335789999999999999999999984    778776532                   1233


Q ss_pred             HHHhcCC--CcEEEEEccceechhhhhhccCCeEEEeCceEEeccccc------------ccccCC------------C-
Q 018384          124 YLLGTHL--KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD------------A-  176 (357)
Q Consensus       124 ~~i~~~~--kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~------------~-  176 (357)
                      ..|..++  |||||+++|.|.|+|+.|+++||.+++++++.|+...+.            +|+-+.            . 
T Consensus        53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~  132 (207)
T TIGR00706        53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT  132 (207)
T ss_pred             HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence            3445555  999999999999999999999999999999887653332            233210            0 


Q ss_pred             -cHH----HHHh-----------------hcChHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 018384          177 -GAS----FYLS-----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (357)
Q Consensus       177 -g~~----~~l~-----------------r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l  220 (357)
                       ..+    ..+.                 |-+.....+-++.|+.+++++|++.||||++...+++
T Consensus       133 ~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~  198 (207)
T TIGR00706       133 RELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDA  198 (207)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHH
Confidence             000    0111                 2222221223468999999999999999999765554

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.30  E-value=2.4e-11  Score=105.46  Aligned_cols=140  Identities=16%  Similarity=0.238  Sum_probs=100.5

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHH
Q 018384           45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  124 (357)
Q Consensus        45 ~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (357)
                      .+|.++.     .+++.....|.+.|+++.+++ ++.|+|.=.    |.|+++..                   ...++.
T Consensus         2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~-------------------~~~I~~   52 (178)
T cd07021           2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS-------------------ALEIVD   52 (178)
T ss_pred             EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH-------------------HHHHHH
Confidence            4566653     366778888999999999886 667766543    44554432                   123556


Q ss_pred             HHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcH--------HHH------HhhcChH--
Q 018384          125 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA--------SFY------LSHLPGH--  188 (357)
Q Consensus       125 ~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~------l~r~~g~--  188 (357)
                      .|..+++|||+.|+|.|.++|+.++++||++++++++.|+.+++-    +..|.        ...      +.+.-|+  
T Consensus        53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~  128 (178)
T cd07021          53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDP  128 (178)
T ss_pred             HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence            677899999999999999999999999999999999999998543    33322        111      1222232  


Q ss_pred             H-HHHHHhcC-------------CCCCHHHHHHcCccceecCC
Q 018384          189 L-GEFLALTG-------------AKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       189 ~-a~~l~ltG-------------~~i~a~eA~~~GLv~~vv~~  217 (357)
                      . +..|+-..             -.++++||++.|++|.++++
T Consensus       129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~  171 (178)
T cd07021         129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS  171 (178)
T ss_pred             HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence            2 45555444             27999999999999999864

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.29  E-value=1.5e-11  Score=110.90  Aligned_cols=143  Identities=12%  Similarity=-0.001  Sum_probs=101.7

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .-+..++.+|.+.|+++..|+++++|||+..+..| ++.++.++                   ...+..+...+|||||.
T Consensus        25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------------~~~i~~~~~~~kpVia~   84 (222)
T cd07018          25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------------RQALERFRASGKPVIAY   84 (222)
T ss_pred             CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------HHHHHHHHHhCCeEEEE
Confidence            34567789999999999999999999999988777 55555544                   22334455679999999


Q ss_pred             EccceechhhhhhccCCeEEEeCceEEeccccc------------ccccCC---------CcHHHH-----------Hh-
Q 018384          137 LNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD---------AGASFY-----------LS-  183 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~~~~-----------l~-  183 (357)
                      ++| |.+||+.|+++||.+++.+.+.|+..-+.            +|+-+.         .+..+.           +. 
T Consensus        85 ~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~  163 (222)
T cd07018          85 ADG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQA  163 (222)
T ss_pred             eCC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHH
Confidence            998 88999999999999999999998885432            222111         111110           01 


Q ss_pred             ----------------hcChHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 018384          184 ----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (357)
Q Consensus       184 ----------------r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l  220 (357)
                                      |-+.....+-+..|..+++++|++.||||++...+++
T Consensus       164 ~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~  216 (222)
T cd07018         164 LLDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDEL  216 (222)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHH
Confidence                            1111221222356999999999999999999865544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.85  E-value=4.1e-08  Score=84.53  Aligned_cols=144  Identities=10%  Similarity=0.194  Sum_probs=102.6

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHH
Q 018384           45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  124 (357)
Q Consensus        45 ~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (357)
                      .+|.++.     .+++.+..-|.+.++.++.| ..+.|+|.=.    |.|+.+...                   ..++.
T Consensus         2 ~vi~i~G-----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-------------------~~I~~   52 (172)
T cd07015           2 YVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-------------------GNIVQ   52 (172)
T ss_pred             EEEEEee-----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-------------------HHHHH
Confidence            4455542     36677888889999998876 4677777643    555554321                   12345


Q ss_pred             HHhcCCCcEEEEEc---cceechhhhhhccCCeEEEeCceEEecccccccccCC----C-c---HHHHH------hhcCh
Q 018384          125 LLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD----A-G---ASFYL------SHLPG  187 (357)
Q Consensus       125 ~i~~~~kPvIa~v~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~----~-g---~~~~l------~r~~g  187 (357)
                      .|...++||++.|+   |.|..+|..++++||.+++.+++.++...+-.|..+.    . .   ....+      .+.-|
T Consensus        53 ~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~G  132 (172)
T cd07015          53 RIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESG  132 (172)
T ss_pred             HHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHC
Confidence            56678999999999   9999999999999999999999999988875443220    0 0   01111      12223


Q ss_pred             H--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 018384          188 H--L-GEFLALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       188 ~--~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      +  . +..++-....++++||+++|++|.++++
T Consensus       133 r~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~  165 (172)
T cd07015         133 RNATIAEEFITKDLSLTPEEALKYGVIEVVARD  165 (172)
T ss_pred             cCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence            2  2 6777888889999999999999999865

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.81  E-value=1.8e-09  Score=101.11  Aligned_cols=175  Identities=20%  Similarity=0.062  Sum_probs=140.4

Q ss_pred             EEEEeC--CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHHHH
Q 018384           37 LVEGKA--NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        37 ~~~~~~--~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      .++..|  ++..+.|+ |+ .|..|.++..+|..-++.+..+..+++..+|+.. +.|++|.|..+....    ......
T Consensus        58 L~~~~Dy~~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg----~h~fsp  131 (380)
T KOG1683|consen   58 LVETLDYTGFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVG----MHFFSP  131 (380)
T ss_pred             ccccccccccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcc----ccccCH
Confidence            444444  67778888 65 5999999999999999999999989999999988 999999999987653    233444


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechh--hhhhccCCeEEEe--CceEEecccccccccCCCcHHHHHhhcChHH
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGG--AGVSIPGTFRVAC--GKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG--~~lal~~D~~ia~--~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (357)
                      .++-++.+++....+++.|+.+++||++--||  +.++.||+|++..  ..-..+..+...++..+..-.-.+....|..
T Consensus       132 a~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~  211 (380)
T KOG1683|consen  132 AHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFR  211 (380)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCcc
Confidence            55667788999999999999999999998888  8899999999998  4555578888888533322333344456666


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCC
Q 018384          190 -GEFLALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       190 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                       +..-+--|.-++..||++-|+++++.|.
T Consensus       212 ~g~~~L~d~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  212 VGERALADGVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             ccHHHHhhccCccHHHHHhhccchhccch
Confidence             5666678899999999999999999985

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.72  E-value=1.3e-07  Score=80.94  Aligned_cols=132  Identities=13%  Similarity=0.088  Sum_probs=89.8

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 018384           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (357)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v  137 (357)
                      ++..+..++...|..++.++..+.|+|.=+    |.|+++..                   ...++..|...++||++.+
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------~~~i~~~i~~~~~~v~~~~   65 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-------------------GMAIYDTIKFIKADVVTII   65 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCceEEE
Confidence            567888999999999998877676666543    44554422                   1234555667889999999


Q ss_pred             ccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcHH--H---------------HHhhcCh--HH-HHHHHh
Q 018384          138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS--F---------------YLSHLPG--HL-GEFLAL  195 (357)
Q Consensus       138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~--~---------------~l~r~~g--~~-a~~l~l  195 (357)
                      .|.|.++|..++++||  .|++.+++.|.+....-|..  +...  .               .+.+.-|  .. ...++-
T Consensus        66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~--g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~  143 (162)
T cd07013          66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTL--GDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE  143 (162)
T ss_pred             EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence            9999999999999999  68888888887654332211  1111  0               1111122  12 344556


Q ss_pred             cCCCCCHHHHHHcCcccee
Q 018384          196 TGAKLNGAEMMACGLATHY  214 (357)
Q Consensus       196 tG~~i~a~eA~~~GLv~~v  214 (357)
                      .+..++|+||+++||||++
T Consensus       144 ~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         144 RDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             CCccccHHHHHHcCCCCcC
Confidence            6666799999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.68  E-value=1.5e-07  Score=83.49  Aligned_cols=136  Identities=15%  Similarity=0.083  Sum_probs=87.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      ..++.++...+...|..++.++..+.|.|.=.    |.|+|+..-                   ..++..|...+.|+++
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t   94 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTAG-------------------LAIYDTMQFIKPDVST   94 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHHH-------------------HHHHHHHHhcCCCEEE
Confidence            34778899999999998886543333333221    334443221                   1234456667889999


Q ss_pred             EEccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcHH------------------HHHhhcChH--H-HHH
Q 018384          136 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS------------------FYLSHLPGH--L-GEF  192 (357)
Q Consensus       136 ~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~~g~--~-a~~  192 (357)
                      .+.|.|.++|..++++++  .|++.+++.|++....-|.   .|..                  ..+...-|.  . ...
T Consensus        95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~  171 (200)
T PRK00277         95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK  171 (200)
T ss_pred             EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999998743  5777666666665443221   1111                  112222332  2 455


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCC
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      ++-.+..++|+||+++||||+|++.
T Consensus       172 ~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        172 DTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HhhCCccccHHHHHHcCCccEEeec
Confidence            6667888999999999999999965

>PRK10949 protease 4; Provisional

Probab=98.66  E-value=3.3e-07  Score=93.85  Aligned_cols=153  Identities=16%  Similarity=0.202  Sum_probs=98.6

Q ss_pred             eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           41 KANSRMAILNRP-----SALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        41 ~~~v~~I~ln~p-----~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      .+.|++|.++.+     ...+.++.   ..+.+.|+.+..|+++|+|||.-.    |.|+....            .   
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a------------s---  382 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA------------S---  382 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH------------H---
Confidence            467888887632     12233444   467778999999999999999976    33332211            1   


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccc------------cccccCCCcHH----
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDAGAS----  179 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~g~~----  179 (357)
                       +.+.+.+..+....||||+.+.|.|..||+-++++||.+++.+.+..+.-.+            ++|+-+....+    
T Consensus       383 -e~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~  461 (618)
T PRK10949        383 -EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLA  461 (618)
T ss_pred             -HHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccC
Confidence             1122233444567899999999999999999999999999999765443221            23432221100    


Q ss_pred             -------------HHHh-----------------hcChHHHHHHHhcCCCCCHHHHHHcCccceecC
Q 018384          180 -------------FYLS-----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSV  216 (357)
Q Consensus       180 -------------~~l~-----------------r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~  216 (357)
                                   ..+.                 |-+.....+-+..|+.|++++|++.||||++-.
T Consensus       462 ~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~  528 (618)
T PRK10949        462 DVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGD  528 (618)
T ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCC
Confidence                         0111                 111222122356899999999999999999965

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.55  E-value=6.2e-07  Score=79.88  Aligned_cols=137  Identities=14%  Similarity=0.050  Sum_probs=95.2

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .++..+..++...|..++.++..+.|.|.=.    |.|+++..-                   ..++..|..++.||++.
T Consensus        43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t~   99 (207)
T PRK12553         43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-------------------DAIYDTIQFIRPDVQTV   99 (207)
T ss_pred             eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhcCCCcEEE
Confidence            4788999999999999986543343333322    444444321                   12445566778899999


Q ss_pred             EccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcHH------------------HHHhhcChH--H-HHHH
Q 018384          137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS------------------FYLSHLPGH--L-GEFL  193 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~~g~--~-a~~l  193 (357)
                      +.|.|.+.|.-++++||  .|++.+++.|.+.....+- +..|-.                  ..+.+.-|.  . ..++
T Consensus       100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~-~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~  178 (207)
T PRK12553        100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGG-GIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD  178 (207)
T ss_pred             EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999  5999999999887765310 112211                  112222332  2 4556


Q ss_pred             HhcCCCCCHHHHHHcCccceecCC
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      +-.+..++|+||+++||||+|+++
T Consensus       179 ~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        179 TDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HhcCccccHHHHHHcCCccEEcCc
Confidence            678899999999999999999964

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.51  E-value=1.6e-05  Score=72.83  Aligned_cols=139  Identities=17%  Similarity=0.112  Sum_probs=94.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      ...++++-.+...+.++.+++. .+-+|-|.-.++++. |.+-.+             ......+.+.+..+...++|+|
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE~-------------~G~~~~ia~~~~~~s~~~VP~I  140 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAEE-------------RGQGEAIARNLMEMSDLKVPII  140 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence            4678899999999999888765 356666655444443 332110             1123344556677788999999


Q ss_pred             EEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccce
Q 018384          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH  213 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~  213 (357)
                      +.|-|.|.|||......||++++.+++.|+.-      .|.++....+...--.. +.+.+    .+++.++.+.|+||+
T Consensus       141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~------~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~  210 (256)
T PRK12319        141 AIIIGEGGSGGALALAVADQVWMLENTMYAVL------SPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDK  210 (256)
T ss_pred             EEEeCCcCcHHHHHhhcCCEEEEecCceEEEc------CHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcE
Confidence            99999999998888889999999998877642      34443333332221112 33333    779999999999999


Q ss_pred             ecCCC
Q 018384          214 YSVSE  218 (357)
Q Consensus       214 vv~~~  218 (357)
                      |+|+.
T Consensus       211 ii~e~  215 (256)
T PRK12319        211 VIPEH  215 (256)
T ss_pred             ecCCC
Confidence            99754

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.47  E-value=6.9e-07  Score=77.28  Aligned_cols=132  Identities=17%  Similarity=0.096  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 018384           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (357)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v  137 (357)
                      ++.+...++...+..+..++..+.|+|.=.    |.|+|+..-                   ..++..+...+.|+++.+
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-------------------~~i~~~l~~~~~~v~t~~   74 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPPVSTIC   74 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence            677888999999999988765454444332    444444321                   123344556789999999


Q ss_pred             ccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcHHHH-----------------HhhcChH--H-HHHHHh
Q 018384          138 NGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGH--L-GEFLAL  195 (357)
Q Consensus       138 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~r~~g~--~-a~~l~l  195 (357)
                      .|.|.++|.-+++++|  .|++.+++.|.+.+...+..-.  ....                 +....|.  . ...++-
T Consensus        75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~  152 (171)
T cd07017          75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD  152 (171)
T ss_pred             EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            9999999999999999  7999999999998876554222  1110                 1111121  2 355566


Q ss_pred             cCCCCCHHHHHHcCcccee
Q 018384          196 TGAKLNGAEMMACGLATHY  214 (357)
Q Consensus       196 tG~~i~a~eA~~~GLv~~v  214 (357)
                      .+..++++||+++||||+|
T Consensus       153 ~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         153 RDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             CCccccHHHHHHcCCCccC
Confidence            8888999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.44  E-value=1.1e-05  Score=75.68  Aligned_cols=140  Identities=13%  Similarity=0.055  Sum_probs=94.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      ...++++-++...+.++.++... +-+|-|--.+++++ |.+-.+             ......+.+.+..+....+|+|
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I  196 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII  196 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence            45788999999999999888653 55565554444443 322111             1122334455666788999999


Q ss_pred             EEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCHHHHHHcCcccee
Q 018384          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY  214 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v  214 (357)
                      ++|-|.|.|||.-....||++++.+++.|+.-      .|.++++..+... .. +.+ +.....++|+++++.|+||+|
T Consensus       197 sVViGeggsGGAlal~~aD~V~m~e~a~~sVi------sPEg~a~Il~~d~-~~-a~~-aA~~~~ita~dL~~~giiD~i  267 (322)
T CHL00198        197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTVA------TPEACAAILWKDS-KK-SLD-AAEALKITSEDLKVLGIIDEI  267 (322)
T ss_pred             EEEeCcccHHHHHhhhcCCeEEEeCCeEEEec------CHHHHHHHHhcch-hh-HHH-HHHHcCCCHHHHHhCCCCeEe
Confidence            99999998888655556999999999887742      3555444443322 21 222 234468999999999999999


Q ss_pred             cCCC
Q 018384          215 SVSE  218 (357)
Q Consensus       215 v~~~  218 (357)
                      +|..
T Consensus       268 i~Ep  271 (322)
T CHL00198        268 IPEP  271 (322)
T ss_pred             ccCC
Confidence            9753

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.43  E-value=2.5e-06  Score=75.32  Aligned_cols=137  Identities=14%  Similarity=0.089  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 018384           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (357)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v  137 (357)
                      ++..+...+...|..++..+..+.|.|.=.    |.|+++..-                   ..++..|...+.||++.+
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~ag-------------------~aI~d~i~~~~~~V~t~v   88 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDAG-------------------FAIFNMIRFVKPKVFTIG   88 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhCCCCEEEEE
Confidence            667888888888888876232343333322    444444321                   124455667899999999


Q ss_pred             ccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcHH---------------HHHhhcChH--H-HHHHHhcC
Q 018384          138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLALTG  197 (357)
Q Consensus       138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~r~~g~--~-a~~l~ltG  197 (357)
                      .|.|.+.|.-++++||-  |++.+++.|.+-...-|+.....-.               ..+...-|.  . ...++-..
T Consensus        89 ~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d  168 (197)
T PRK14512         89 VGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRD  168 (197)
T ss_pred             EeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcC
Confidence            99999999999999985  8999998887665543321111000               001112222  1 34555566


Q ss_pred             CCCCHHHHHHcCccceecCC
Q 018384          198 AKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       198 ~~i~a~eA~~~GLv~~vv~~  217 (357)
                      ..++|+||+++||||+|++.
T Consensus       169 ~~lta~EA~~yGliD~I~~~  188 (197)
T PRK14512        169 FWLDSSSAVKYGLVFEVVET  188 (197)
T ss_pred             cccCHHHHHHcCCccEeecC
Confidence            78999999999999999975

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.42  E-value=1.4e-06  Score=76.12  Aligned_cols=135  Identities=16%  Similarity=0.171  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCce--EEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           58 LNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~--~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      +|.++...+...|..++.++..+  .|.|.      |.|+|+...                   ..++..|..++.|+++
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN------SpGG~v~~g-------------------~~i~~~i~~~~~~v~t   79 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIYIN------SPGGDVDAG-------------------LAIYDAIRSSKAPVTT   79 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE------ECEBCHHHH-------------------HHHHHHHHHSSSEEEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEEEc------CCCCccHHH-------------------HHHHHHHHhcCCCeEE
Confidence            78899999998888774332222  33344      455555331                   2345567788999999


Q ss_pred             EEccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcHHH----HH-----------hhcCh--HH-HHHHHh
Q 018384          136 ILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF----YL-----------SHLPG--HL-GEFLAL  195 (357)
Q Consensus       136 ~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~----~l-----------~r~~g--~~-a~~l~l  195 (357)
                      .+.|.|.+.|..++++||.  |++.+++.|.+.+...+......-..    .+           ....|  .. ..+++-
T Consensus        80 ~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~  159 (182)
T PF00574_consen   80 VVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMD  159 (182)
T ss_dssp             EEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCS
T ss_pred             EEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence            9999999999999999999  89999999999988766533111100    01           01111  11 344455


Q ss_pred             cCCCCCHHHHHHcCccceecCC
Q 018384          196 TGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       196 tG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      ...-++++||+++||||+|+.+
T Consensus       160 ~~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  160 RDTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             STEEEEHHHHHHHTSSSEEESS
T ss_pred             CCccccHHHHHHcCCCCEeccC
Confidence            5566899999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.36  E-value=1.9e-05  Score=75.97  Aligned_cols=137  Identities=15%  Similarity=0.078  Sum_probs=92.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      ..++++-++...+.++.++... +-+|-|.-.++++ .|.+..+             ......+...+..+....+|+|+
T Consensus       200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpGA~-pG~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS  264 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPGAY-AGIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA  264 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-CCHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence            4688999999999999888653 5556555443333 2222111             11234455567778899999999


Q ss_pred             EEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCcccee
Q 018384          136 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHY  214 (357)
Q Consensus       136 ~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~v  214 (357)
                      .|-|.+.+||.....+||++++.+++.++.-      .|.++++..+....-.. +.+    ...++++++++.|+||+|
T Consensus       265 VViGeGgSGGAlalg~aD~VlMle~A~ysVi------sPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~I  334 (431)
T PLN03230        265 TVIGEGGSGGALAIGCGNRMLMMENAVYYVA------SPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEI  334 (431)
T ss_pred             EEeCCCCcHHHHHhhcCCEEEEecCCEEEec------CHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEe
Confidence            9999996666554457899999999876542      35454554443332222 333    338999999999999999


Q ss_pred             cCC
Q 018384          215 SVS  217 (357)
Q Consensus       215 v~~  217 (357)
                      +|.
T Consensus       335 I~E  337 (431)
T PLN03230        335 VPE  337 (431)
T ss_pred             ccC
Confidence            975

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.32  E-value=2.9e-05  Score=72.83  Aligned_cols=139  Identities=12%  Similarity=0.074  Sum_probs=92.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      ...++++-.+...+.++.++.- .+-+|-|.-.+++++ |.+..+             ......+.+.+..+....+|+|
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~I  193 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVI  193 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEE
Confidence            4578899999999999888765 356666654444433 322111             1123345556677788999999


Q ss_pred             EEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccce
Q 018384          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH  213 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~  213 (357)
                      ++|-|.|.|||..-...||++++.+++.++.      +.|.++++..+...--.. +.+    -..+++.++++.|+||+
T Consensus       194 sVViGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~iD~  263 (316)
T TIGR00513       194 CTVIGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGLIDS  263 (316)
T ss_pred             EEEecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCCCeE
Confidence            9999999777775555699999999987763      234444444333211111 333    25678999999999999


Q ss_pred             ecCCC
Q 018384          214 YSVSE  218 (357)
Q Consensus       214 vv~~~  218 (357)
                      |+|..
T Consensus       264 II~ep  268 (316)
T TIGR00513       264 IIPEP  268 (316)
T ss_pred             eccCC
Confidence            99753

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.32  E-value=2.3e-05  Score=79.98  Aligned_cols=139  Identities=13%  Similarity=0.022  Sum_probs=94.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      ..+++++-++...+.++.++... +-+|-|-=.+++++ |.+...             ......+.+.+..+....+|+|
T Consensus       220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDTpGA~p-G~~AEe-------------~Gq~~aIArnl~amasl~VP~I  284 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYA-DLKSEE-------------LGQGEAIAHNLRTMFGLKVPIV  284 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CchhHH-------------HhHHHHHHHHHHHHhCCCCCEE
Confidence            45788998999999988887653 55555554444443 322221             1223445566777889999999


Q ss_pred             EEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCHHHHHHcCcccee
Q 018384          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY  214 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v  214 (357)
                      ++|-|.|.|||.-....||++++.+++.|+.      +.|.++++..+...--..  + +.....++|++++++|+||+|
T Consensus       285 SVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~~A~--e-AAe~lkiTa~dL~~lGiiD~I  355 (762)
T PLN03229        285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKAAP--K-AAEKLRITAQELCRLQIADGI  355 (762)
T ss_pred             EEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcccHH--H-HHHHcCCCHHHHHhCCCCeee
Confidence            9999999888877777799999999887653      234444444333322112  1 234468999999999999999


Q ss_pred             cCC
Q 018384          215 SVS  217 (357)
Q Consensus       215 v~~  217 (357)
                      +|.
T Consensus       356 IpE  358 (762)
T PLN03229        356 IPE  358 (762)
T ss_pred             ccC
Confidence            985

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.32  E-value=6.2e-06  Score=72.87  Aligned_cols=137  Identities=13%  Similarity=0.076  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .+|.++..++...|-.++.++..+-|.|.=+    |.|+|+..-                   ..++..+...+.||...
T Consensus        38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~g-------------------~aIyd~m~~~~~~V~Tv   94 (200)
T CHL00028         38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVISG-------------------LAIYDTMQFVKPDVHTI   94 (200)
T ss_pred             eecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhhH-------------------HHHHHHHHhcCCCEEEE
Confidence            4889999999999999875443343332211    334443221                   22455677789999999


Q ss_pred             EccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcH-HH-----------------HHhhcChH--H-HHHH
Q 018384          137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGA-SF-----------------YLSHLPGH--L-GEFL  193 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~-~~-----------------~l~r~~g~--~-a~~l  193 (357)
                      +.|.|.+.|.-|++++|  -|++.+++.|.+.....|+.  .|- +.                 .+...-|.  . ..++
T Consensus        95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~  172 (200)
T CHL00028         95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISED  172 (200)
T ss_pred             EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999999999  69999999999887765521  121 11                 11111222  1 3455


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCC
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVSE  218 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~~  218 (357)
                      +-....++|+||+++||||+|+++.
T Consensus       173 ~~r~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        173 MERDVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             hhcCccCCHHHHHHcCCCcEEeecC
Confidence            5667779999999999999998653

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.28  E-value=3e-05  Score=72.80  Aligned_cols=140  Identities=11%  Similarity=0.061  Sum_probs=94.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      ...++++-.+...+.++.++.- .+-+|-|.-.+++++ |.+-.+             ......+.+++..+....+|+|
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I  193 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII  193 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence            4578899999999998888764 466666665544444 432211             1123445566777889999999


Q ss_pred             EEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCHHHHHHcCcccee
Q 018384          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY  214 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v  214 (357)
                      +.|-|.|.|||..-...||++++.+++.|+       +.++-|++..|.+-... +.+. -....+++.++++.|+||+|
T Consensus       194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~~-a~~a-ae~~~ita~~l~~~g~iD~I  264 (319)
T PRK05724        194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDASK-APEA-AEAMKITAQDLKELGIIDEI  264 (319)
T ss_pred             EEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCchh-HHHH-HHHcCCCHHHHHHCCCceEe
Confidence            999999988777555569999999888765       33333444444333222 2222 12456899999999999999


Q ss_pred             cCCC
Q 018384          215 SVSE  218 (357)
Q Consensus       215 v~~~  218 (357)
                      +|..
T Consensus       265 I~Ep  268 (319)
T PRK05724        265 IPEP  268 (319)
T ss_pred             ccCC
Confidence            9753

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=98.27  E-value=1.3e-05  Score=70.60  Aligned_cols=137  Identities=15%  Similarity=0.040  Sum_probs=89.7

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .++..+...+...|..++.++..+.|+|.=.    |.|+|+..-                   ..++..+...+.||...
T Consensus        34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~g-------------------~~I~d~l~~~~~~v~t~   90 (191)
T TIGR00493        34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITAG-------------------LAIYDTMQFIKPDVSTI   90 (191)
T ss_pred             EEChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEE
Confidence            3667788888888888886554444443322    345554321                   12344455667778888


Q ss_pred             EccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcHH---------------HHHhhcChH--H-HHHHHhc
Q 018384          137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLALT  196 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~r~~g~--~-a~~l~lt  196 (357)
                      +.|.|.+.|..+++++|  .|++.+++.|.+.+...|......-.               ..+.+.-|.  . ..+++-.
T Consensus        91 ~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~  170 (191)
T TIGR00493        91 CIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER  170 (191)
T ss_pred             EEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence            88999999998888765  69999999999876654432111111               012222332  2 4556677


Q ss_pred             CCCCCHHHHHHcCccceecC
Q 018384          197 GAKLNGAEMMACGLATHYSV  216 (357)
Q Consensus       197 G~~i~a~eA~~~GLv~~vv~  216 (357)
                      +..++|+||+++||||+|+.
T Consensus       171 ~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       171 DFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             CccCcHHHHHHcCCccEEec
Confidence            88899999999999999975

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.13  E-value=2e-05  Score=74.81  Aligned_cols=86  Identities=19%  Similarity=0.295  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccce
Q 018384           62 MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVT  141 (357)
Q Consensus        62 ~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a  141 (357)
                      ..+.+.+.|+.+..|+++++|+|.=.    |.|+....-                ..+++.++++..-. ||++.+++.|
T Consensus        81 ~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as----------------~~i~~~l~~l~~~~-PV~v~v~~~A  139 (317)
T COG0616          81 GGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVAS----------------ELIARALKRLRAKK-PVVVSVGGYA  139 (317)
T ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhHH----------------HHHHHHHHHHhhcC-CEEEEECCee
Confidence            35566677888999999999999754    445433211                12233344444444 9999999999


Q ss_pred             echhhhhhccCCeEEEeCceEEecccc
Q 018384          142 MGGGAGVSIPGTFRVACGKTVFATPET  168 (357)
Q Consensus       142 ~GgG~~lal~~D~~ia~~~a~f~~pe~  168 (357)
                      ..||+.++++||.+||++.+..|---+
T Consensus       140 ASGGY~IA~aAd~I~a~p~si~GSIGV  166 (317)
T COG0616         140 ASGGYYIALAADKIVADPSSITGSIGV  166 (317)
T ss_pred             cchhhhhhccCCEEEecCCceeeecee
Confidence            999999999999999999887664433

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.13  E-value=2.3e-05  Score=74.07  Aligned_cols=156  Identities=12%  Similarity=0.062  Sum_probs=92.6

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHH
Q 018384           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (357)
Q Consensus        41 ~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (357)
                      ++.|++|.++.+=..+ -...+-+++...+..+..+   .+|||.-.    |.|+.+.....                ..
T Consensus        89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~~----------------a~  144 (330)
T PRK11778         89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYGL----------------AA  144 (330)
T ss_pred             CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHHH----------------HH
Confidence            4678888888653211 1223445555555554433   46777654    33333221100                00


Q ss_pred             HHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEeccccc------------ccccCC---------CcH-
Q 018384          121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD---------AGA-  178 (357)
Q Consensus       121 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~-  178 (357)
                      ..+.++....||+|+.+++.|..||+.++++||-+++.+.+.++...+-            +|+-+.         .+. 
T Consensus       145 ~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~p  224 (330)
T PRK11778        145 SQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTL  224 (330)
T ss_pred             HHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCC
Confidence            1133455678999999999999999999999999999998876654332            222100         000 


Q ss_pred             ----H----HHHhhcCh---------------HHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 018384          179 ----S----FYLSHLPG---------------HLGEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (357)
Q Consensus       179 ----~----~~l~r~~g---------------~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l  220 (357)
                          +    ..+...+.               ..-.+-+.+|+.+++++|++.||||++...+++
T Consensus       225 f~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~  289 (330)
T PRK11778        225 FGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY  289 (330)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence                0    00111111               011223568999999999999999999765554

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.13  E-value=3.7e-05  Score=67.90  Aligned_cols=137  Identities=12%  Similarity=0.093  Sum_probs=93.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCce--EEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH  133 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~--~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  133 (357)
                      ..++.++-..+...|-.++.++.-+  -|.|-+      .|+|+..-                   ..++..+...+-||
T Consensus        34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INS------pGG~v~~G-------------------laIyd~m~~~~~~V   88 (201)
T PRK14513         34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINC------PGGEVYAG-------------------LAIYDTMRYIKAPV   88 (201)
T ss_pred             CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEEC------CCCchhhH-------------------HHHHHHHHhcCCCE
Confidence            3588888888888888887543222  233344      34443221                   22455667788899


Q ss_pred             EEEEccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcHHHH-----------------HhhcChH--H-HH
Q 018384          134 VAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGH--L-GE  191 (357)
Q Consensus       134 Ia~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------l~r~~g~--~-a~  191 (357)
                      ...+.|.|.+.|..|++++|-  |++.+++.+.+.....|+.  +.....                 +.+.-|.  . -.
T Consensus        89 ~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~  166 (201)
T PRK14513         89 STICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLL  166 (201)
T ss_pred             EEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            999999999999999999996  8999999998877765541  112211                 1122232  1 34


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEK  219 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~  219 (357)
                      +++-....++|+||+++||||+|+++..
T Consensus       167 ~~~~rd~~msa~EA~eyGliD~I~~~~~  194 (201)
T PRK14513        167 RDMERDYFMSPEEAKAYGLIDSVIEPTR  194 (201)
T ss_pred             HHhccCcccCHHHHHHcCCCcEEeccCC
Confidence            4455666799999999999999997644

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=98.12  E-value=0.00019  Score=66.20  Aligned_cols=157  Identities=12%  Similarity=0.078  Sum_probs=97.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC----CceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDP----NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~----~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      |+++-.+..=..-+++...-..+..+++.+.+|.    .+.+|.|.-.|     |..+.+-..        ....+.+ +
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg~~--------~L~~~a~-i  126 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEANA--------GLIAIAE-I  126 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhhHH--------HHHHHHH-H
Confidence            5555555544667899888999999999987622    23466665543     333322110        1111111 1


Q ss_pred             HHHHHHHhcCCCcEEEEEccc--eechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH--H-HHHHH
Q 018384          120 YSFIYLLGTHLKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLA  194 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~--~-a~~l~  194 (357)
                      ...+..+... +|+|+.+-|+  |+||+..++.+||++|+++++.+++.           +...+....|.  . ..+-.
T Consensus       127 ~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~  194 (274)
T TIGR03133       127 MRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA  194 (274)
T ss_pred             HHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhc
Confidence            1222233344 9999999999  89999999999999999998877663           12223333342  2 44444


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL  227 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l  227 (357)
                      |.-+.+.++.....|++|.+++++. +++..++
T Consensus       195 l~~~~lGG~~~~~sG~~D~~v~dd~-~a~~~~~  226 (274)
T TIGR03133       195 LVWRTTGGKHRFLSGDADVLVEDDV-DAFRAAV  226 (274)
T ss_pred             ccccccchHhHhhcccceEEeCCHH-HHHHHHH
Confidence            5556677778888999999998644 3344433

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=98.12  E-value=0.00048  Score=62.48  Aligned_cols=156  Identities=13%  Similarity=0.029  Sum_probs=93.9

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-HcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAW-ENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~-~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      +|.-..|.=|+|..  .++.+-...+...+... +.+..+-+|.|.=.++ |-.|..             .+.......+
T Consensus        30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~-------------aE~~G~~~a~   93 (238)
T TIGR03134        30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRR-------------EELLGINQAL   93 (238)
T ss_pred             CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHH-------------HHHHHHHHHH
Confidence            44445555566652  78888888888888885 5556777666654422 222221             1112222333


Q ss_pred             HHHHHHHh---cCCCcEEEEEccceechhh-hhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHh
Q 018384          120 YSFIYLLG---THLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL  195 (357)
Q Consensus       120 ~~l~~~i~---~~~kPvIa~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~l  195 (357)
                      .+++..+.   ..+.|+|+.|-|.++|||+ .+.+.+|.+++.+++.+       +..++-+++..+.+-... +.++.-
T Consensus        94 A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i-------~vm~~e~aa~I~~~~~~~-~~e~a~  165 (238)
T TIGR03134        94 AHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMV-------HVMDLESMARVTKRSVEE-LEALAK  165 (238)
T ss_pred             HHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEE-------EecCHHHHHHHHccCHhH-HHHHHH
Confidence            33444444   5569999999999999886 44445888877766654       455555555544443332 222211


Q ss_pred             c--CCCCCHHHHHHcCccceecCCCCh
Q 018384          196 T--GAKLNGAEMMACGLATHYSVSEKL  220 (357)
Q Consensus       196 t--G~~i~a~eA~~~GLv~~vv~~~~l  220 (357)
                      +  -...+.+.+.++|+||+|+++.+-
T Consensus       166 ~~~~~a~~~~~~~~~G~vd~vi~~~~~  192 (238)
T TIGR03134       166 SSPVFAPGIENFVKLGGVHALLDVADA  192 (238)
T ss_pred             hhhhhccCHHHHHhCCCccEEeCCCCc
Confidence            1  123567789999999999987664

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.11  E-value=3.6e-05  Score=68.83  Aligned_cols=137  Identities=11%  Similarity=0.046  Sum_probs=90.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCce--EEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH  133 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~--~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  133 (357)
                      ..+|..+...+...|..++..+.-+  .|.|-+.|+...+|                         ..++..+...+-||
T Consensus        61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG-------------------------laIyd~m~~~~~~V  115 (221)
T PRK14514         61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG-------------------------LGIYDTMQFISSDV  115 (221)
T ss_pred             CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH-------------------------HHHHHHHHhcCCCE
Confidence            3477788888888777776432212  23334444333222                         12445667788999


Q ss_pred             EEEEccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcHHH---------------HHhhcChH--H-HHHH
Q 018384          134 VAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGH--L-GEFL  193 (357)
Q Consensus       134 Ia~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~r~~g~--~-a~~l  193 (357)
                      .+.+.|.|.+.|..|++++|.  |++.+++.|.+-...-|......-..               .+.+.-|.  . ..++
T Consensus       116 ~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~  195 (221)
T PRK14514        116 ATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWAD  195 (221)
T ss_pred             EEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            999999999999999999996  89999999888776544321111000               01122232  1 3455


Q ss_pred             HhcCCCCCHHHHHHcCccceecCC
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      +-....++|+||+++||||+|++.
T Consensus       196 ~~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        196 SDRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             hhcCccCCHHHHHHcCCccEEeec
Confidence            666778999999999999999864

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.07  E-value=6.8e-05  Score=66.05  Aligned_cols=139  Identities=12%  Similarity=0.033  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .+|.++..++...|..++.++..+-+.+.=+    |.|+|+..-                   ..++..+...+.||+..
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~aIyd~m~~~~~~V~t~   89 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYDG-------------------LGIFDTMQHVKPDVHTV   89 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhhH-------------------HHHHHHHHhcCCCEEEE
Confidence            4889999999999999885443333333221    344444321                   12455566788899999


Q ss_pred             EccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcHHH---------------HHhhcChH--H-HHHHHhc
Q 018384          137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGH--L-GEFLALT  196 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~r~~g~--~-a~~l~lt  196 (357)
                      +.|.|.+.|..|++++|-  |++.+++.|.+....-|..-...-..               .+.+.-|.  . ..+++-.
T Consensus        90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r  169 (196)
T PRK12551         90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR  169 (196)
T ss_pred             EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence            999999999999999985  88999999888776533211110000               01112232  1 3445556


Q ss_pred             CCCCCHHHHHHcCccceecCCC
Q 018384          197 GAKLNGAEMMACGLATHYSVSE  218 (357)
Q Consensus       197 G~~i~a~eA~~~GLv~~vv~~~  218 (357)
                      ...++|+||+++||||+|++..
T Consensus       170 d~~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        170 DFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             CcCCCHHHHHHcCCCcEEeccC
Confidence            6679999999999999999764

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.89  E-value=0.00017  Score=65.65  Aligned_cols=98  Identities=15%  Similarity=0.150  Sum_probs=77.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      .+.++.+...++.++++....+..+ .++|.      +.|+++..                   ..++...+..++.|++
T Consensus        69 ~~~I~i~dse~v~raI~~~~~~~~I-dLii~------TpGG~v~A-------------------A~~I~~~l~~~~~~v~  122 (285)
T PF01972_consen   69 YRYIDIDDSEFVLRAIREAPKDKPI-DLIIH------TPGGLVDA-------------------AEQIARALREHPAKVT  122 (285)
T ss_pred             ceeEcHhhHHHHHHHHHhcCCCCce-EEEEE------CCCCcHHH-------------------HHHHHHHHHhCCCCEE
Confidence            3678899999999999988776554 33343      34554432                   1234556778999999


Q ss_pred             EEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcH
Q 018384          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA  178 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~  178 (357)
                      +.|++.|+.+|.-++++||-+++.+++.+|--+.++|-.|..+.
T Consensus       123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si  166 (285)
T PF01972_consen  123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI  166 (285)
T ss_pred             EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence            99999999999999999999999999999999999998886543

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.89  E-value=0.00027  Score=66.04  Aligned_cols=150  Identities=13%  Similarity=0.100  Sum_probs=91.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC----CceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDP----NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~----~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      |+++-.+..=..-+++......+..+++.+.++.    -+.+|.|.-.|+     ..+.+-.        .....+. .+
T Consensus        70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG-----aRlqEg~--------~~L~~~a-~i  135 (301)
T PRK07189         70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG-----VRLQEAN--------AGLAAIA-EI  135 (301)
T ss_pred             EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC-----cCccchH--------HHHHHHH-HH
Confidence            5555555555678899999999999999998765    155666665443     3332210        0011111 11


Q ss_pred             HHHHHHHhcCCCcEEEEEccc--eechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH--H-HHHHH
Q 018384          120 YSFIYLLGTHLKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLA  194 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~--~-a~~l~  194 (357)
                      ...+..+... +|+|+.+-|+  |+||+...+.+||++|+++++.+++.           +...+....|.  . ..+-.
T Consensus       136 ~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~  203 (301)
T PRK07189        136 MRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA  203 (301)
T ss_pred             HHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhc
Confidence            2222233344 9999999999  99999999999999999998877663           11112222231  1 23323


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCC
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEK  219 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~  219 (357)
                      +..+.+.+......|.+|.+++++.
T Consensus       204 ~vw~~lGG~h~~~sG~~D~~v~dd~  228 (301)
T PRK07189        204 LVWRTTGGKHRYLSGLADALVDDDV  228 (301)
T ss_pred             ccccccCcceeeecccceEEeCCHH
Confidence            3222333344556999999998654

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.88  E-value=0.00072  Score=63.21  Aligned_cols=153  Identities=13%  Similarity=0.104  Sum_probs=97.2

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHH
Q 018384           40 GKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT  118 (357)
Q Consensus        40 ~~~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~  118 (357)
                      .+|.-..|.-|++. ...+++....+.+.++++.+... .+-+|.|.-.|+     ..+.+       + ....... ..
T Consensus       118 I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqE-------g-i~sL~~~-ak  182 (292)
T PRK05654        118 IEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQE-------G-LLSLMQM-AK  182 (292)
T ss_pred             ECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhh-------h-hhHHHhH-HH
Confidence            44544445555554 67899999999999999998866 477788876553     32221       0 0001111 12


Q ss_pred             HHHHHHHHhcCCCcEEEEEccceechhh-hhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcC
Q 018384          119 LYSFIYLLGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTG  197 (357)
Q Consensus       119 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG  197 (357)
                      ....+.++....+|.|+++-|+|+||+. .+++.+|++|+.+++.+++-..+           .+...++.   ++  .-
T Consensus       183 ~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e---~l--pe  246 (292)
T PRK05654        183 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE---KL--PE  246 (292)
T ss_pred             HHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh---hh--hh
Confidence            2233344566789999999999999965 46778999999988877763221           11112221   11  11


Q ss_pred             CCCCHHHHHHcCccceecCCCChhHH
Q 018384          198 AKLNGAEMMACGLATHYSVSEKLPLI  223 (357)
Q Consensus       198 ~~i~a~eA~~~GLv~~vv~~~~l~~~  223 (357)
                      +.=+++-+.+.|+||.|+++.++...
T Consensus       247 ~~~~ae~~~~~G~vD~Vv~~~e~r~~  272 (292)
T PRK05654        247 GFQRAEFLLEHGAIDMIVHRRELRDT  272 (292)
T ss_pred             hhcCHHHHHhCCCCcEEECHHHHHHH
Confidence            12256777899999999999887653

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.83  E-value=0.0006  Score=63.48  Aligned_cols=152  Identities=12%  Similarity=0.110  Sum_probs=96.3

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHH
Q 018384           40 GKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT  118 (357)
Q Consensus        40 ~~~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~  118 (357)
                      .+|.-..|.-+++. ..-+++....+.+..+++.+.+. .+-+|.|...|++     -+.+       + ......+ ..
T Consensus       117 I~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqE-------g-~~sL~~~-ak  181 (285)
T TIGR00515       117 LYGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQE-------A-LLSLMQM-AK  181 (285)
T ss_pred             ECCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----cccc-------c-hhHHHhH-HH
Confidence            34543334444443 67799999999999999998765 4677888765543     2211       1 0111111 12


Q ss_pred             HHHHHHHHhcCCCcEEEEEccceechhh-hhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcC
Q 018384          119 LYSFIYLLGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTG  197 (357)
Q Consensus       119 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG  197 (357)
                      ....+.++....+|.|+++-|+|.||+. .+++.+|++|+.+++.+++...+           .+...+|..     +.-
T Consensus       182 ~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~-----lpe  245 (285)
T TIGR00515       182 TSAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREK-----LPE  245 (285)
T ss_pred             HHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCc-----cch
Confidence            2223345566789999999999999965 46679999999999888774322           122222211     111


Q ss_pred             CCCCHHHHHHcCccceecCCCChhH
Q 018384          198 AKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       198 ~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                      +.=+++-+.+.|+||.|+++.++..
T Consensus       246 ~~q~ae~~~~~G~vD~iv~~~~~r~  270 (285)
T TIGR00515       246 GFQTSEFLLEHGAIDMIVHRPEMKK  270 (285)
T ss_pred             hcCCHHHHHhCCCCcEEECcHHHHH
Confidence            1225566788999999999988765

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.74  E-value=2.8e-05  Score=66.01  Aligned_cols=94  Identities=17%  Similarity=0.108  Sum_probs=58.3

Q ss_pred             hcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEeccccc------------ccc---------cCCCc-----HH-
Q 018384          127 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGF---------HPDAG-----AS-  179 (357)
Q Consensus       127 ~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl---------~p~~g-----~~-  179 (357)
                      ....|||||.++|.+..+|+-|+.+||-+++.+.+.++..-+.            +|+         ....+     .+ 
T Consensus         3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~   82 (154)
T PF01343_consen    3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE   82 (154)
T ss_dssp             HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred             cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence            4678999999999999999999999999999998876664332            222         11111     11 


Q ss_pred             ---HHHhhc-----------------ChHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 018384          180 ---FYLSHL-----------------PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (357)
Q Consensus       180 ---~~l~r~-----------------~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l  220 (357)
                         ..+.+.                 +.....+-+..|..+++++|++.||||++-..+++
T Consensus        83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~  143 (154)
T PF01343_consen   83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEA  143 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHH
Confidence               111111                 11111222579999999999999999999754444

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.68  E-value=0.00036  Score=71.66  Aligned_cols=86  Identities=13%  Similarity=-0.065  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 018384           61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  140 (357)
Q Consensus        61 ~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~  140 (357)
                      -.+.++.+.|+.+..|+.|++|||.-.+   +.|.++..+                +.+.+.+..+....|||||..++.
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~  136 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNY  136 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEccc
Confidence            3577999999999999999999999752   224333221                112233444556789999998877


Q ss_pred             eechhhhhhccCCeEEEeCceEEecc
Q 018384          141 TMGGGAGVSIPGTFRVACGKTVFATP  166 (357)
Q Consensus       141 a~GgG~~lal~~D~~ia~~~a~f~~p  166 (357)
                      + -+|+-|+.+||-+++.+.+.+++.
T Consensus       137 ~-s~~YylAs~AD~I~~~p~G~v~~~  161 (584)
T TIGR00705       137 S-QGQYYLASFADEIILNPMGSVDLH  161 (584)
T ss_pred             c-chhhhhhhhCCEEEECCCceEEee
Confidence            5 678999999999999998777553

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.61  E-value=0.0011  Score=61.52  Aligned_cols=149  Identities=13%  Similarity=0.134  Sum_probs=91.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |+++-++-.=..-++....-+.+..+++.+.... +-+|+++..|+     +.+.+-.        .....+.+ ....+
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SGG-----ARmQEg~--------~sL~qmak-~saa~  199 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASGG-----ARMQEGS--------LSLMQMAK-ISSAL  199 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCCC-----ccccccc--------hhhhhhHH-HHHHH
Confidence            4545555444678899999999999999987654 67777776543     3332210        00111111 11112


Q ss_pred             HH-HhcCCCcEEEEEccceechhhhh-hccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCC
Q 018384          124 YL-LGTHLKPHVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLN  201 (357)
Q Consensus       124 ~~-i~~~~kPvIa~v~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~  201 (357)
                      .. ...-.+|.|+++.|+|.||+... +++||++|+.+++.+++.-.+           .+...+|..     +.-.-=+
T Consensus       200 ~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge~-----lpe~fq~  263 (296)
T CHL00174        200 YDYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNKT-----VPEGSQA  263 (296)
T ss_pred             HHHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCCc-----CCccccc
Confidence            22 22467999999999999998755 777999999888876654211           111111211     1111124


Q ss_pred             HHHHHHcCccceecCCCChhHH
Q 018384          202 GAEMMACGLATHYSVSEKLPLI  223 (357)
Q Consensus       202 a~eA~~~GLv~~vv~~~~l~~~  223 (357)
                      ++-.++.|+||.+|+..++.+.
T Consensus       264 ae~l~~~G~vD~iV~r~~lr~~  285 (296)
T CHL00174        264 AEYLFDKGLFDLIVPRNLLKGV  285 (296)
T ss_pred             HHHHHhCcCceEEEcHHHHHHH
Confidence            6667899999999998887643

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.49  E-value=0.0011  Score=58.06  Aligned_cols=97  Identities=15%  Similarity=0.025  Sum_probs=64.9

Q ss_pred             HHHHHhcCCCcEEEEEccceechhhhhhccCCeE--EEeCceEEecccccccccCCCcHHHH--Hh--------------
Q 018384          122 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR--VACGKTVFATPETLIGFHPDAGASFY--LS--------------  183 (357)
Q Consensus       122 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~--ia~~~a~f~~pe~~~Gl~p~~g~~~~--l~--------------  183 (357)
                      ++..+...+.||...|-|.+...|..|++++|..  ++.+++++......-|+ -+. ++-.  -.              
T Consensus        77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~-~G~-a~Di~i~A~ei~~~~~~l~~i~  154 (200)
T COG0740          77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGA-QGQ-ASDIEIHAREILKIKERLNRIY  154 (200)
T ss_pred             HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccC-ccC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455677899999999999999999999999885  88888877766555222 111 1110  00              


Q ss_pred             -hcChHH---HHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 018384          184 -HLPGHL---GEFLALTGAKLNGAEMMACGLATHYSVSEKL  220 (357)
Q Consensus       184 -r~~g~~---a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l  220 (357)
                       ..-|..   -....-....++|+||+++||||+|.+..+.
T Consensus       155 a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~  195 (200)
T COG0740         155 AEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA  195 (200)
T ss_pred             HHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence             011111   1223335556999999999999999876543

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=97.38  E-value=0.0034  Score=56.22  Aligned_cols=143  Identities=15%  Similarity=0.098  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCce--EEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~--~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      ..+.++...+...|-.++.++..+  -+-|-+.|+...+|-=+...                .....++..+...+-||.
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v----------------~~glaIyD~m~~ik~~V~  111 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE----------------TEAFAICDTMRYIKPPVH  111 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc----------------ccHHHHHHHHHhcCCCeE
Confidence            344558888888887776543222  34556666555555111100                011234556667788899


Q ss_pred             EEEccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcHHHHHh------------------hcChHH---HH
Q 018384          135 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFYLS------------------HLPGHL---GE  191 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------r~~g~~---a~  191 (357)
                      ..+-|.|.+.+..|++++|-  |++.++++|.+.....|..   |.+.=+.                  +.-|..   -.
T Consensus       112 Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~  188 (222)
T PRK12552        112 TICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLS  188 (222)
T ss_pred             EEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999995  8999999998877664431   2221111                  111211   12


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSE  218 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~  218 (357)
                      +++-....++|+||+++||||+|+.+.
T Consensus       189 ~d~~rd~wmsA~EA~eyGliD~Ii~~~  215 (222)
T PRK12552        189 KDTDRMFYLTPQEAKEYGLIDRVLESR  215 (222)
T ss_pred             HHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence            333444569999999999999999653

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.38  E-value=0.007  Score=61.20  Aligned_cols=159  Identities=16%  Similarity=0.122  Sum_probs=100.0

Q ss_pred             CCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHH
Q 018384           42 ANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (357)
Q Consensus        42 ~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (357)
                      |.-..|.-|+|. ...+++++..+...+.++.+.+. .+-+|.|.-.++ |..|.+-.             .........
T Consensus       314 G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E-------------~~g~~~~~a  378 (512)
T TIGR01117       314 GQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQE-------------YGGIIRHGA  378 (512)
T ss_pred             CEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHH-------------HHHHHHHHH
Confidence            333334445554 44579999999999999988764 466777665544 55543211             122334455


Q ss_pred             HHHHHHhcCCCcEEEEEccceechhhhhhc----cCCeEEEeCceEEecccccccccCCCcHHHHH-hhcCh----HH-H
Q 018384          121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPG----HL-G  190 (357)
Q Consensus       121 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l-~r~~g----~~-a  190 (357)
                      +++.++....+|.|+.|-|.+.|||+.-..    .+|++++.+++.++.       .++-++...+ .+.+.    .. +
T Consensus       379 ~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~  451 (512)
T TIGR01117       379 KVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAAT  451 (512)
T ss_pred             HHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHH
Confidence            677888889999999999999888654443    289988888776654       3333333222 22111    01 1


Q ss_pred             HH--H-HhcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          191 EF--L-ALTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       191 ~~--l-~ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                      ..  + -..-+.-++..+.+.|+||.|+++.+...
T Consensus       452 ~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~  486 (512)
T TIGR01117       452 RKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRP  486 (512)
T ss_pred             HHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHH
Confidence            11  1 11223447888999999999999988764

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0048  Score=59.99  Aligned_cols=148  Identities=11%  Similarity=0.154  Sum_probs=106.2

Q ss_pred             EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           40 GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        40 ~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      -++.|.+|.++     +.+++.+.+.+.+.++.++++.. .+|||.=+    .-|                   .+.+.+
T Consensus        24 ~~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ld----TPG-------------------Gl~~sm   74 (436)
T COG1030          24 AEKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELD----TPG-------------------GLLDSM   74 (436)
T ss_pred             cCCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEec----CCC-------------------chHHHH
Confidence            34567788886     56999999999999999997763 34444321    001                   123445


Q ss_pred             HHHHHHHhcCCCcEEEEEc---cceechhhhhhccCCeEEEeCceEEecccccccc---cCCCc-HHHH------HhhcC
Q 018384          120 YSFIYLLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF---HPDAG-ASFY------LSHLP  186 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl---~p~~g-~~~~------l~r~~  186 (357)
                      .++.++|.+.|.||+..+.   +.|..+|.-++++||+..+++.+.++-...-.+-   .+... ....      +.+.-
T Consensus        75 ~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~  154 (436)
T COG1030          75 RQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEER  154 (436)
T ss_pred             HHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHc
Confidence            6688899999999988885   4699999999999999999999998876554332   11111 1111      12222


Q ss_pred             hH--H-HHHHHhcCCCCCHHHHHHcCccceecC
Q 018384          187 GH--L-GEFLALTGAKLNGAEMMACGLATHYSV  216 (357)
Q Consensus       187 g~--~-a~~l~ltG~~i~a~eA~~~GLv~~vv~  216 (357)
                      |+  . |.+++-....++++||++.|++|-+..
T Consensus       155 gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~  187 (436)
T COG1030         155 GRNPTWAERFVTENLSLTAEEALRQGVIDLIAR  187 (436)
T ss_pred             CCChHHHHHHhhhccCCChhHHHhcCccccccC
Confidence            32  3 788999999999999999999998875

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=97.15  E-value=0.012  Score=59.32  Aligned_cols=139  Identities=14%  Similarity=0.171  Sum_probs=91.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCcccccc--ChHHHHHhhccCChHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG--DIVSLYHFMNQGKLEECKDFFRTLYS  121 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~--Dl~~~~~~~~~~~~~~~~~~~~~~~~  121 (357)
                      |.++-.+..-...+++......+..+++.+..+. +-+|.|.-     |.|.  ++.+-..        ....+.. +..
T Consensus        59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~--------~l~~~g~-i~~  123 (493)
T PF01039_consen   59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVE--------SLMGMGR-IFR  123 (493)
T ss_dssp             EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHH--------HHHHHHH-HHH
T ss_pred             EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhh--------hhhhhHH-HHH
Confidence            4444444444678899999999999999998764 55666654     3444  4433221        1111222 222


Q ss_pred             HHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCC
Q 018384          122 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL  200 (357)
Q Consensus       122 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i  200 (357)
                      -...+.. .+|+|+++.|+|.|||..++..||++|+.++ +.+++.                    |+...+ ..+|+.+
T Consensus       124 ~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~vv~-~~~Ge~~  181 (493)
T PF01039_consen  124 AIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRVVE-SATGEEV  181 (493)
T ss_dssp             HHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHHHH-HHHSSCT
T ss_pred             HHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec--------------------cccccc-cccCccc
Confidence            2334455 9999999999999999999999999999997 776643                    112111 2457888


Q ss_pred             CHHHH-------HHcCccceecCCCC
Q 018384          201 NGAEM-------MACGLATHYSVSEK  219 (357)
Q Consensus       201 ~a~eA-------~~~GLv~~vv~~~~  219 (357)
                      +.++.       ...|.+|.++++++
T Consensus       182 ~~~~lgG~~~h~~~sG~~d~v~~de~  207 (493)
T PF01039_consen  182 DSEELGGADVHAAKSGVVDYVVDDEE  207 (493)
T ss_dssp             SHHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred             cchhhhhhhhhcccCCCceEEEechH
Confidence            87764       46899999998653

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK10949 protease 4; Provisional

Probab=97.11  E-value=0.0046  Score=63.80  Aligned_cols=86  Identities=15%  Similarity=0.029  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 018384           61 NMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  140 (357)
Q Consensus        61 ~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~  140 (357)
                      -.+.++.++|+.+..|+.|++|||.-.+.   .|..+..+                ..+...+..+....|||||.-+..
T Consensus        95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~----------------~eI~~ai~~fk~sGKpVvA~~~~~  155 (618)
T PRK10949         95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM----------------QYIGKALREFRDSGKPVYAVGDSY  155 (618)
T ss_pred             ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH----------------HHHHHHHHHHHHhCCeEEEEecCc
Confidence            34568999999999999999999998631   12222111                112233444556789999964444


Q ss_pred             eechhhhhhccCCeEEEeCceEEecc
Q 018384          141 TMGGGAGVSIPGTFRVACGKTVFATP  166 (357)
Q Consensus       141 a~GgG~~lal~~D~~ia~~~a~f~~p  166 (357)
                       --+++-|+.+||-+++.+.+.+++.
T Consensus       156 -~s~~YyLASaAD~I~l~P~G~v~~~  180 (618)
T PRK10949        156 -SQGQYYLASFANKIYLSPQGVVDLH  180 (618)
T ss_pred             -cchhhhhhhhCCEEEECCCceEEEe
Confidence             4578999999999999998776543

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=96.86  E-value=0.0013  Score=60.19  Aligned_cols=89  Identities=13%  Similarity=0.121  Sum_probs=65.3

Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCC
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAK  199 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~  199 (357)
                      .+-+..+.++++|+||.|=|---+||.-=...+|.+++-++++|+.      +.|.++++.++..--  .+.+ +.....
T Consensus       178 A~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~~--ka~e-AAe~mk  248 (317)
T COG0825         178 ARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDAS--KAKE-AAEAMK  248 (317)
T ss_pred             HHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcChh--hhHH-HHHHcC
Confidence            3445567889999999999987666654455589999999999984      467776665543322  2222 234468


Q ss_pred             CCHHHHHHcCccceecCC
Q 018384          200 LNGAEMMACGLATHYSVS  217 (357)
Q Consensus       200 i~a~eA~~~GLv~~vv~~  217 (357)
                      |+|++.+++|+||.|+|.
T Consensus       249 ita~dLk~lgiID~II~E  266 (317)
T COG0825         249 ITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             CCHHHHHhCCCcceeccC
Confidence            999999999999999975

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.55  E-value=0.062  Score=54.97  Aligned_cols=143  Identities=14%  Similarity=0.094  Sum_probs=86.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |.++-.+..=+..+++....+.+..+++.+.+.. +-+|.|.-.|+.+-.+ ....+.         ....+ ..+....
T Consensus       131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGarl~~-q~e~~~---------~~~~~-g~if~~~  198 (569)
T PLN02820        131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGANLPR-QAEVFP---------DRDHF-GRIFYNQ  198 (569)
T ss_pred             EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCCcc-cccccc---------hHhHH-HHHHHHH
Confidence            3333333333678999999999999999988664 5677776554443211 000000         00011 1111122


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a  202 (357)
                      ..+....+|.|+++-|+|.|||.....+||++|++++ +.+.+.                    |+...+ ..+|+.+++
T Consensus       199 ~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~-~~~Ge~v~~  257 (569)
T PLN02820        199 ARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVK-AATGEEVSA  257 (569)
T ss_pred             HHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHH-hhcCcccCH
Confidence            2345567999999999999999999999999999874 444431                    111111 145566666


Q ss_pred             HHHH-------HcCccceecCCCC
Q 018384          203 AEMM-------ACGLATHYSVSEK  219 (357)
Q Consensus       203 ~eA~-------~~GLv~~vv~~~~  219 (357)
                      ++.-       .-|.++.++++|.
T Consensus       258 eeLGGa~~h~~~sGv~d~~~~de~  281 (569)
T PLN02820        258 EDLGGADVHCKVSGVSDHFAQDEL  281 (569)
T ss_pred             HHhCCHHHhcccccccccccCchH
Confidence            6552       4788888877543

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=96.36  E-value=0.15  Score=46.57  Aligned_cols=148  Identities=14%  Similarity=0.158  Sum_probs=96.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |+...++-.=-..+|..-.-..+..+++.+-.+. +.+|+++.+|     |.-..+-.        -...+ .......+
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSG-----GARMQEg~--------lSLMQ-MaktsaAl  188 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASG-----GARMQEGI--------LSLMQ-MAKTSAAL  188 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCc-----chhHhHHH--------HHHHH-HHHHHHHH
Confidence            4445555433456788888899999999988664 7889888754     33332210        00011 12233455


Q ss_pred             HHHhcCCCcEEEEEccceechh-hhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGG-AGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a  202 (357)
                      .++.....|.|+.+.++..||= ..+++..|+.||.++|.+||...++       .-+.+...++.        | -=++
T Consensus       189 ~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LPe--------g-fQ~a  252 (294)
T COG0777         189 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLPE--------G-FQTA  252 (294)
T ss_pred             HHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-------hhhhhcccCCc--------c-hhhH
Confidence            6677889999999999999884 6899999999999888777653321       11111111111        1 1256


Q ss_pred             HHHHHcCccceecCCCChhH
Q 018384          203 AEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       203 ~eA~~~GLv~~vv~~~~l~~  222 (357)
                      +-.++.|+||.||+..++..
T Consensus       253 EfLlehG~iD~iv~R~elr~  272 (294)
T COG0777         253 EFLLEHGMIDMIVHRDELRT  272 (294)
T ss_pred             HHHHHcCCceeeecHHHHHH
Confidence            77889999999999877654

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.17  E-value=0.1  Score=52.81  Aligned_cols=138  Identities=15%  Similarity=0.175  Sum_probs=83.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |+++-.+-.=+.-+++....+.+..+++.+.++. +-+|.|.-.|+.     .+.+-..        ....+.+.+... 
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGa-----rm~eg~~--------~l~~~~~~~~~~-  148 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGA-----RIQEAVD--------ALKGYGDIFYRN-  148 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCC-----Cccccch--------hhhhHHHHHHHH-
Confidence            4444434333678899999999999999998765 566666654433     2211000        001111111111 


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCce-EEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a  202 (357)
                       ....-.+|.|+++.|+|.||+.....+||++|+++++ .+++.           +...+..          .+|+.+++
T Consensus       149 -~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~vv~~----------~~Ge~v~~  206 (512)
T TIGR01117       149 -TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQVIKT----------VTGEEVTA  206 (512)
T ss_pred             -HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------ChHHHHh----------hcCcccch
Confidence             1123459999999999999998887899999999964 34431           1111111          34555555


Q ss_pred             HHH-------HHcCccceecCCC
Q 018384          203 AEM-------MACGLATHYSVSE  218 (357)
Q Consensus       203 ~eA-------~~~GLv~~vv~~~  218 (357)
                      ++.       ..-|.+|.+++++
T Consensus       207 e~lGGa~~h~~~sGv~d~~~~de  229 (512)
T TIGR01117       207 EQLGGAMAHNSVSGVAHFIAEDD  229 (512)
T ss_pred             hhcchHHHhccccceeEEecCCh
Confidence            554       2589999998754

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=95.43  E-value=0.13  Score=51.88  Aligned_cols=159  Identities=17%  Similarity=0.180  Sum_probs=93.8

Q ss_pred             CCEEEEEEcCCCCC-CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHH
Q 018384           42 ANSRMAILNRPSAL-NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (357)
Q Consensus        42 ~~v~~I~ln~p~~~-Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (357)
                      |.-.-|.-|+|... -+++++-.....+.++..+. -++-+|.|.-. ..|..|-+             .+.........
T Consensus       293 G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~-------------~E~~g~~~~ga  357 (493)
T PF01039_consen  293 GRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPE-------------AERAGIIRAGA  357 (493)
T ss_dssp             TEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHH-------------HHHTTHHHHHH
T ss_pred             CcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccch-------------hhhcchHHHHH
Confidence            33344555666422 27999999999999998886 45777777643 33444432             12223445566


Q ss_pred             HHHHHHhcCCCcEEEEEccceechhhhhhccC----CeEEEeCceEEecccccccccCCCcHHHHHhhcC-------h--
Q 018384          121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG----TFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-------G--  187 (357)
Q Consensus       121 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~----D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~-------g--  187 (357)
                      +++.++..+++|+|..|-|.++|||.......    |+++|.+++.++       +.++-++...+.+.-       |  
T Consensus       358 ~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~  430 (493)
T PF01039_consen  358 RLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGAD  430 (493)
T ss_dssp             HHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHS
T ss_pred             HHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccch
Confidence            78889999999999999999999887555545    777777666665       443333333332211       0  


Q ss_pred             HHH---HHHH-hcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          188 HLG---EFLA-LTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       188 ~~a---~~l~-ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                      ..+   ..+- ..-..-++..+...|++|.++++.+...
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~  469 (493)
T PF01039_consen  431 PEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRK  469 (493)
T ss_dssp             HHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHH
T ss_pred             hHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHH
Confidence            000   0110 0111247889999999999999888764

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=94.44  E-value=1.4  Score=45.27  Aligned_cols=144  Identities=13%  Similarity=0.065  Sum_probs=92.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      -.++.+-.....+.++..+. -++-+|-|.-.++ |..|.+-..             ....+...+++.++....+|.|+
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~-------------~G~~~~~a~l~~A~a~~~VP~is  444 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEA-------------SGIAKAGAKMVMAVACAKVPKIT  444 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHH-------------hhHHHHHHHHHHHHHhCCCCEEE
Confidence            45888888888888888775 4566666654422 555543221             23455667788889999999999


Q ss_pred             EEccceechhhhhhc----cCCeEEEeCceEEecccccccccCCCcHHHHHhhc-C------------hHH-H-HH-H-H
Q 018384          136 ILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-P------------GHL-G-EF-L-A  194 (357)
Q Consensus       136 ~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~------------g~~-a-~~-l-~  194 (357)
                      +|=|.++|+|..-.+    ..|++++.+++       .+|..++-++.-.+.+. +            -.. + .+ + -
T Consensus       445 vi~g~a~G~g~~aM~g~~~~~d~~~awp~A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  517 (569)
T PLN02820        445 IIVGGSFGAGNYGMCGRAYSPNFLFMWPNA-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVE  517 (569)
T ss_pred             EEECCcchHHHHHhcCcCCCCCEEEECCCC-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHH
Confidence            999999998765444    45666666555       55555555555444431 1            100 0 00 0 1


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChh
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLP  221 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~  221 (357)
                      ..-+..++-.|-+.|+||.|+++.+-.
T Consensus       518 ~~~~~~~p~~aa~~~~vD~VIdP~dTR  544 (569)
T PLN02820        518 AYEREANPYYSTARLWDDGVIDPADTR  544 (569)
T ss_pred             HHHHhCCHHHHHHcCCcCcccCHHHHH
Confidence            112245677788999999999886654

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=0.19  Score=45.42  Aligned_cols=132  Identities=14%  Similarity=0.091  Sum_probs=73.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      -.++.++-+.+..-|-.++.+++-|-+.+.=+    |.|+++..-                   ..++..+..++-||-.
T Consensus        99 ~~Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vtag-------------------lAIYDtMq~ik~~V~T  155 (275)
T KOG0840|consen   99 QPIDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPDVST  155 (275)
T ss_pred             CcCcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccchh-------------------hhHHHHHHhhCCCcee
Confidence            34788888888888888887666665555433    334333210                   1133344455556555


Q ss_pred             EEccceechhhhhhccCCeEEEeCceEEeccccccccc-CCCcHHHHHhhcChHHHHHH------------HhcC-----
Q 018384          136 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH-PDAGASFYLSHLPGHLGEFL------------ALTG-----  197 (357)
Q Consensus       136 ~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~-p~~g~~~~l~r~~g~~a~~l------------~ltG-----  197 (357)
                      .+=|.|.+-|.-|..+     .+.+-++++|..++=+. |.+|..-- ..=+-.+|+++            --||     
T Consensus       156 ic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gq-a~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~  229 (275)
T KOG0840|consen  156 ICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQ-ATDIVIQAKELMRIKEYLNEIYAKHTGQPLEV  229 (275)
T ss_pred             eehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCcc-chHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            5567777666544433     24566677777776663 33321100 00000001111            1244     


Q ss_pred             --------CCCCHHHHHHcCccceecC
Q 018384          198 --------AKLNGAEMMACGLATHYSV  216 (357)
Q Consensus       198 --------~~i~a~eA~~~GLv~~vv~  216 (357)
                              +.++|+||++.||||+|++
T Consensus       230 i~~d~dRd~fmsa~EA~eyGliD~v~~  256 (275)
T KOG0840|consen  230 IEKDMDRDRFMSAEEAKEYGLIDKVID  256 (275)
T ss_pred             HHhhhcccccCCHHHHHHhcchhhhhc
Confidence                    4589999999999999985

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=92.64  E-value=0.53  Score=47.34  Aligned_cols=102  Identities=11%  Similarity=0.018  Sum_probs=64.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      +.++--+.+-+.-++.+-....+..+.+.+.++..-.+.+..|      .|..+.+=..        ....+ ..+..-.
T Consensus        93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~ds------gGari~~~v~--------~l~g~-g~iF~~~  157 (526)
T COG4799          93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDS------GGARIQEGVP--------SLAGY-GRIFYRN  157 (526)
T ss_pred             EEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcc------cccccccCcc--------ccccc-hHHHHHH
Confidence            3333334455788888888888888888888765434444443      3333322110        00111 1111112


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCce
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT  161 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a  161 (357)
                      .++... +|.|++|-|.|.|||.-+...||++|+.++.
T Consensus       158 a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         158 ARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             HHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence            233444 9999999999999999999999999999984

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=90.75  E-value=0.47  Score=46.60  Aligned_cols=59  Identities=14%  Similarity=0.095  Sum_probs=47.5

Q ss_pred             HHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe---eccC
Q 018384          293 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ---ILNK  355 (357)
Q Consensus       293 ~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af---l~~r  355 (357)
                      +.+++++..+|.++..+|+.++.. .......+..|...+...+.   ++|++|++++|   +++|
T Consensus       228 ~~~~~i~~~~p~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~---~~d~~ei~~al~~~~~kr  289 (401)
T PLN02157        228 EQLKKLLTDDPSVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFS---HDTVEEIIDSLEIEAGRR  289 (401)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhc---CCCHHHHHHHHHhhhccc
Confidence            457788888999999999999865 23466777778888878776   99999999999   6544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	357
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		3e-55
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		3e-38
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		4e-29
3ju1_A	407	Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F		4e-24
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		4e-16
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		2e-14
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		2e-14
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		2e-14
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		3e-14
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		3e-14
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		3e-14
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		5e-14
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		8e-14
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		1e-13
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		4e-13
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		2e-12
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		8e-12
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		8e-12
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		1e-11
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		2e-11
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		3e-11
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		1e-10
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		1e-10
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-10
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		1e-10
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		2e-09
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		4e-09
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		7e-09
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		1e-08
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		2e-08
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		2e-08
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		3e-08
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		3e-08
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		8e-08
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-07
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-07
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		3e-07
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		3e-07
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		8e-07
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		1e-06
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		1e-06
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		1e-06
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		2e-06
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		3e-06
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		3e-06
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		3e-06
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		3e-06
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		5e-06
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		5e-06
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		6e-06
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		7e-06
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-05
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		8e-05
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		8e-05
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		1e-04
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		2e-04
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		3e-04
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		3e-04
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		4e-04

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score =  212 bits (539), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/320 (39%), Positives = 182/320 (56%), Gaps = 12/320 (3%)
Query: 31  DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-R 89
           D   +VL+  K  + +  LNRP  LNAL  N   ++    K WE DP    + +KG+G +
Sbjct: 3   DAAEEVLLGKKGCTGVITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGK 62
Query: 90  AFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVS 149
           AFCAGGDI  +     + K +    FFR  Y     +G+  KP+VA+++G+T GGG G+S
Sbjct: 63  AFCAGGDIRVISE-AEKAKQKIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGLS 121
Query: 150 IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACG 209
           + G FRVA  K +FA PET IG  PD G  ++L  L G LG FLALTG +L G ++   G
Sbjct: 122 VHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAG 181
Query: 210 LATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SDLVYPDKNSVIHR-IDIVDKC 266
           +ATH+  SEKL  +EE+L  L +     I + LE Y     +  DK+ ++    D ++ C
Sbjct: 182 IATHFVDSEKLAXLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHXDKINSC 241
Query: 267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV 326
           F  +TVEEII++L+ + S     +    L+++ + SP SLK++LR + EG  +T  E L 
Sbjct: 242 FSANTVEEIIENLQQDGS----SFALEQLKVINKXSPTSLKITLRQLXEGSSKTLQEVLT 297
Query: 327 REYRMSLQGVSRLISGDFYE 346
            EYR+S Q   R    DF+E
Sbjct: 298 XEYRLS-QACXR--GHDFHE 314

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 171/324 (52%), Gaps = 18/324 (5%)
Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
             VLV  +    +  LNRP A+N+L   M   + +   AWEND ++  V + G+G R  C
Sbjct: 9   EDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLC 68
Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
           AGGD+V++YH   +    E + F+   Y     +G + KP+V+I++G+ MGGG GV   G
Sbjct: 69  AGGDVVAIYHSA-KADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHG 127
Query: 153 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLAT 212
             RV    T  A PE  IGF PD G ++ LS  PG LG   ALTGA  +GA+ +  G A 
Sbjct: 128 NVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGKLGLHAALTGAPFSGADAIVMGFAD 187
Query: 213 HYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 272
           HY   +K+    +E  + V  D   ++A L  ++    P  + +  +   +D+C+  DTV
Sbjct: 188 HYVPHDKI----DEFTRAVIADG--VDAALAAHAQ--EPPASPLAEQRSWIDECYTGDTV 239
Query: 273 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIRE-GRFQTFDECLVREYRM 331
            +II +L +     + P  G    L+   SP++L V+L S+R   + Q+ ++ L +EYR+
Sbjct: 240 ADIIAALRAH----DAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRV 295
Query: 332 SLQGVSRLISGDFYEVSNFQILNK 355
           S    + L S D  E    Q+++K
Sbjct: 296 S---CASLKSHDLVEGIRAQLVDK 316

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 150/336 (44%), Gaps = 35/336 (10%)
Query: 26  SSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMK 85
            S +D L  +V   G+       L+RP+ALNAL      +++   + W  DP +  V + 
Sbjct: 21  QSXSDVLIRKVRRAGRIT-----LSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVID 75
Query: 86  GSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
             G RAFCAGGDI  L+     G     +DF+R  Y     +    KP V++  G T GG
Sbjct: 76  AEGPRAFCAGGDIAELHGRGVAGDHAFGQDFWRVEYRXNDRIAAFPKPIVSLXQGFTXGG 135
Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 204
           G G+      R+    +  + PE  IG  PD G +  L+  PG +G +L LTGA+    +
Sbjct: 136 GVGLGCHARHRIVGETSQISXPECAIGLVPDVGGTHLLARAPGRIGVWLGLTGARXGPGD 195
Query: 205 MMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI---- 260
            +  G A  + V E              D P +I A LE   DL  PD  +   R+    
Sbjct: 196 AIFAGFADRF-VPE-------------ADWPDLI-AALEG-GDLALPDHAAPEGRLPVLQ 239
Query: 261 DIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSI-REGRFQ 319
           D +D+ F   T+ EI   LE+     + P     L+ L+ +SPL+L  +L  + R G   
Sbjct: 240 DEIDRLFA-GTLAEIPARLEA----TDTPLAAEALKALRRSSPLALAATLEILQRLGPSA 294
Query: 320 TFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 355
              E L  EYR + +   +    DF E     I++K
Sbjct: 295 GIREALDLEYRFTYRAQGQ---ADFLEGIRAAIIDK 327

>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 142/316 (44%), Gaps = 25/316 (7%)
Query: 46  MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYH-- 102
           +  LN   ALNAL+ +           W+ DP I  V + GSG +AFCAGGD+ +LYH  
Sbjct: 54  VVTLNVEKALNALDLDXVRAXTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHAS 113
Query: 103 FMNQGKLEE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
              +G++ E  K FF   Y   YLL T+ KP +   +G+  GGG G+    + +V    +
Sbjct: 114 VAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVXGGGLGLXAGASHKVVTETS 173
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLP 221
             A PE  IG +PD G S++L+  PG  G FL LT    N A+    GLA HY   +   
Sbjct: 174 RIAXPEVTIGLYPDVGGSYFLNRXPGKXGLFLGLTAYHXNAADACYVGLADHYLNRDDKE 233
Query: 222 LIEEELGKL-VTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLE 280
           L  +    L  +D P++    L+          N + +++DI      L   +E ID L 
Sbjct: 234 LXFDAXATLDWSDSPALNHQRLDTXI-------NELSNQVDIPKGDSVLAESQEXIDRLX 286
Query: 281 S---------EASLIND-PWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR 330
           +          ++L  D  W           SP+S  ++    + G   +  +C   E  
Sbjct: 287 AGSLTDIVTRXSTLSTDEAWLSKACATXLAGSPISWHLAYIQTQLGTKLSLAQCFKWELT 346
Query: 331 MSLQGVSRLISGDFYE 346
           +S+   ++   GDF E
Sbjct: 347 VSVNVCAK---GDFCE 359

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 40  GKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIV 98
           GK N+   I LNRP ALNAL   +  +LN+  K +E DP +G + + G  +AF AG DI 
Sbjct: 38  GKNNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIK 97
Query: 99  SLYHFMNQGKLEECKDFFRTLYSFIYL-----LGTHLKPHVAILNGVTMGGGAGVSIPGT 153
            + +             F+  YS  +L     L    KP +A +NG   GGG  +++   
Sbjct: 98  EMQNLS-----------FQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCD 146
Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLAT 212
              A  K  FA PE LIG  P AG +  L+   G  L   + LTG +++  +    GL +
Sbjct: 147 IIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVS 206
Query: 213 HYSVSEKLPLIEEEL 227
                E   L+EE +
Sbjct: 207 KICPVE--TLVEEAI 219

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 29/190 (15%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL   +  +LN+  + +E DP +G + + G  +AF AG DI  + +      
Sbjct: 20  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 75
Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                  F+  YS  +L  +H        KP +A +NG  +GGG  +++      A  K 
Sbjct: 76  -------FQDCYSGKFL--SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 126
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
            F  PE L+G  P AG +  L+   G  L   + LTG +++  +    GL     VS+  
Sbjct: 127 QFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL-----VSKIF 181
Query: 221 P---LIEEEL 227
           P   L+EE +
Sbjct: 182 PVETLVEEAI 191

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 29/190 (15%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL   +  +LN+  + +E DP +G + + G  +AF AG DI  + +      
Sbjct: 22  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 77
Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                  F+  YS  +L  +H        KP +A +NG  +GGG  +++      A  K 
Sbjct: 78  -------FQDCYSGKFL--SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 128
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
            F  PE L+G  P AG +  L+   G  L   + LTG +++  +    GL     VS+  
Sbjct: 129 QFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL-----VSKIF 183
Query: 221 P---LIEEEL 227
           P   L+EE +
Sbjct: 184 PVETLVEEAI 193

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 29/190 (15%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL   +  +LN+  + +E DP +G + + G  +AF AG DI  + +      
Sbjct: 23  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 78
Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                  F+  YS  +L  +H        KP +A +NG  +GGG  +++      A  K 
Sbjct: 79  -------FQDCYSGKFL--SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 129
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
            F  PE L+G  P AG +  L+   G  L   + LTG +++  +    GL     VS+  
Sbjct: 130 QFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL-----VSKIF 184
Query: 221 P---LIEEEL 227
           P   L+EE +
Sbjct: 185 PVETLVEEAI 194

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 79/165 (47%), Gaps = 8/165 (4%)
Query: 39  EGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIV 98
           E K       LNRP  LNA    M A++ K  K    DPN+  V + G+GRAFCAG D+ 
Sbjct: 8   EVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLS 67
Query: 99  SLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTFRVA 157
            +   M+ G      D  R+ Y+ +     HL KP VA +NG   G G  +++   FR+ 
Sbjct: 68  GVTEEMDHG------DVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLL 121
Query: 158 CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLN 201
             K  FA     +G  PDAG  +YL  L G      LA+ G K+ 
Sbjct: 122 SEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVT 166

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG + + GS +AF AG 
Sbjct: 7   ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 66
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           DI  +             DFF T       L     P +A + G  +GGG  +++     
Sbjct: 67  DIKEMADLTFADAF--TADFFATWGK----LAAVRTPTIAAVAGYALGGGCELAMMCDVL 120
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 214
           +A     F  PE  +G  P  G S  L+   G      L LTG  ++ AE    GL +  
Sbjct: 121 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 180
Query: 215 SVSEKL 220
             ++ L
Sbjct: 181 VPADDL 186

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG + + GS +AF AG 
Sbjct: 6   ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 65
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           DI  +             DFF T       L     P +A + G  +GGG  +++     
Sbjct: 66  DIKEMADLTFADAF--TADFFATWGK----LAAVRTPTIAAVAGYALGGGCELAMMCDVL 119
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 214
           +A     F  PE  +G  P  G S  L+   G      L LTG  ++ AE    GL +  
Sbjct: 120 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 179
Query: 215 SVSEKL 220
             ++ L
Sbjct: 180 VPADDL 185

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG + + GS +AF AG 
Sbjct: 27  ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 86
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           DI  +             DFF T       L     P +A + G  +GGG  +++     
Sbjct: 87  DIKEMADLTFADAF--TADFFATWGK----LAAVRTPTIAAVAGYALGGGCELAMMCDVL 140
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 214
           +A     F  PE  +G  P  G S  L+   G      L LTG  ++ AE    GL +  
Sbjct: 141 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 200
Query: 215 SVSEKL 220
             ++ L
Sbjct: 201 VPADDL 206

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 26/221 (11%)
Query: 25  SSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSM 84
           + ++T+      +VE + N  +  ++RP A NA+N  +   +    +  + DP +  V +
Sbjct: 6   AETLTEVTRQAAVVERRGNVALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVI 65
Query: 85  KGSG-RAFCAGGDIVSLYHFMNQGKLEECK-DFFRTLYSFIYLLGTHLKPHVAILNGVTM 142
            G+G ++FCAG D+ ++    N    E  +  F   ++ FI       KP +A +NG  +
Sbjct: 66  TGAGDKSFCAGADLKAISRGENLYHAEHPEWGFAGYVHHFID------KPTIAAVNGTAL 119
Query: 143 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLN 201
           GGG+ +++     +AC    F  PE   G    AG  F +   LP  +   L LTG  + 
Sbjct: 120 GGGSELALASDLVIACESASFGLPEVKRGLIAGAGGVFRIVEQLPRKVALELVLTGEPMT 179
Query: 202 GAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACL 242
            ++ +  GL     ++E +P            D +V+EA L
Sbjct: 180 ASDALRWGL-----INEVVP------------DGTVVEAAL 203

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 87/193 (45%), Gaps = 8/193 (4%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           VL E +    +  LNRP  LNA+   +   L    K  E D  +  + + G+GRAF AG 
Sbjct: 2   VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQ 61
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D   L  F ++    + +   R     +  L    KP V  +NGV  G G  +++ G  R
Sbjct: 62  D---LTEFGDRKP--DYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLR 116
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATHY 214
           +A     F T    IG  PD+G SF L  L G    + L L   +L+  E +A GL    
Sbjct: 117 LAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRV 176
Query: 215 SVSEKLPLIEEEL 227
             +EK  L+EE L
Sbjct: 177 VPAEK--LMEEAL 187

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 19/211 (9%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L RP  LNAL+  M A++    +A++ +  +  + + G GRAF AG DI  +    +  +
Sbjct: 20  LARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAK-DDPIR 78
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           LE    F    +  + ++ T   P +A +NG+ +GGG  +++     VA     F  PE 
Sbjct: 79  LEWLNQF--ADWDRLSIVKT---PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEV 133
Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 226
            +G  P AG +  L+ L  P    E+L  TGA+++  E    G+     VS +L L+EE 
Sbjct: 134 NLGVMPGAGGTQRLTKLIGPKRALEWL-WTGARMSAKEAEQLGIVNRV-VSPEL-LMEET 190
Query: 227 L---GKLVTDDP---SVIEACLEKYSDLVYP 251
           +   G+L    P    +I+  ++K  D  YP
Sbjct: 191 MRLAGRLAEQPPLALRLIKEAVQKAVD--YP 219

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 20/233 (8%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+RP ALNALN  + A++    + ++ D  IG + + GS RAF AG DI  +        
Sbjct: 25  LDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQA 84
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            E      R L S    L    KP VA + G  +GGG  +++     +A     F  PE 
Sbjct: 85  RE------RNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEI 138
Query: 169 LIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATH-----------YSV 216
            +G  P  G +  L+   G      L LTG  L   E    GL +             +V
Sbjct: 139 TLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAV 198
Query: 217 SEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 269
           ++++  +    G+ V D  ++ EA     S  +  ++++     D  D+  G+
Sbjct: 199 AQRIARMSRPAGRAVKD--AINEAFERPLSAGMRYERDAFYAMFDTHDQTEGM 249

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 3/197 (1%)
Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
           +Q +   S+  D+  ++ V      R+  LNRP +LN++N ++   L +L++   +DP  
Sbjct: 14  AQTQGPGSMVYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTA 73
Query: 80  GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 139
               + G+GRAF AGGD   L        L       R     +  +     P VA +NG
Sbjct: 74  RAAVITGAGRAFSAGGDFGYLKELSADADLR--AKTIRDGREIVLGMARCRIPVVAAVNG 131
Query: 140 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGF-HPDAGASFYLSHLPGHLGEFLALTGA 198
             +G G  +               A P   +G    D G   +  H+   L +  ALTG 
Sbjct: 132 PAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGT 191
Query: 199 KLNGAEMMACGLATHYS 215
           +++    +  GLA H +
Sbjct: 192 RISAQRAVELGLANHVA 208

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+TD      L E + N  +  +NRP A NA+N  +   +    +  ++DP +  V + G
Sbjct: 4   SMTD--APGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTG 61
Query: 87  SG-RAFCAGGDIVSLYHFMNQGKLEECK-DFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
           +G ++FCAG D+ ++    N    +  +  F   +  FI       KP +A +NG  +GG
Sbjct: 62  AGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFID------KPTIAAVNGTALGG 115
Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHLGEFLALTGAKLNGA 203
           G  +++     VA  +  F  PE   G    AG  F ++  LP  +   L LTG  L+ A
Sbjct: 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAA 175
Query: 204 EMMACGL 210
                GL
Sbjct: 176 AARDWGL 182

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+TD      L E + N  +  +NRP A NA+N  +   +    +  ++DP +  V + G
Sbjct: 4   SMTD--APGALAERRGNVMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTG 61
Query: 87  SG-RAFCAGGDIVSLYHFMNQGKLEECK-DFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
           +G ++FCAG D+ ++    N    +  +  F   +  FI       KP +A +NG  +GG
Sbjct: 62  AGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFID------KPTIAAVNGTALGG 115
Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHLGEFLALTGAKLNGA 203
           G  +++     VA  +  F  PE   G    AG  F ++  LP  +   L LTG  L+ A
Sbjct: 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAA 175
Query: 204 EMMACGL 210
                GL
Sbjct: 176 AARDWGL 182

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 6/178 (3%)
Query: 45  RMAILNRPSALNALNTNM-GAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHF 103
           R   LNRP ALNA N  +  A    L  A  +DP +  V + GSGR F AG D+  +   
Sbjct: 17  RTLTLNRPEALNAFNEALYDATAQALLDA-ADDPQVAVVLLTGSGRGFSAGTDLAEMQAR 75
Query: 104 MNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
           +      E K  FR L   I  L    KP +  +NG+ +G GA +               
Sbjct: 76  ITDPNFSEGKFGFRGL---IKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARL 132
Query: 164 ATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
             P T +G  P+A +S+ L  L G     +L ++   ++  E +  GL       E+L
Sbjct: 133 KCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEEL 190

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 11/190 (5%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+RP  LNA++T M  +L+   +  E D ++  V + G+GRAFC+GGD   L      G 
Sbjct: 21  LDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGD---LTGGDTAGA 77
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            +      R + S         KP +A ++G  +G G  +++     VA   + F    T
Sbjct: 78  ADAANRVVRAITSLP-------KPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFT 130
Query: 169 LIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227
            +G  PD GAS  L  L G      +A+T  K++ A     G+ +H + +++   +  ++
Sbjct: 131 RVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDV 190
Query: 228 GKLVTDDPSV 237
            + V+  P++
Sbjct: 191 LRSVSGGPTL 200

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 4/182 (2%)
Query: 33  CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFC 92
             ++LVE      +  +NRP   NAL+TNM ++    +   ++D  I    + G+G A+C
Sbjct: 8   ARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYC 67
Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
            GGD+   +  +  G          T+   + L  T  KP +A +NG  +GGG  +    
Sbjct: 68  VGGDLSDGW-MVRDGSAPPLDPA--TIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQT 124
Query: 153 TFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHLGEFLALTGAKLNGAEMMACGLA 211
             RV+     F  PE   G  P AG+   L   +P      + LTG  L   E    GL 
Sbjct: 125 DIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLV 184
Query: 212 TH 213
            H
Sbjct: 185 GH 186

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL-ALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 3/209 (1%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 214 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 241
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWE---NDPNIGFVSMKGSGRAFC 92
            LVE + ++ +  +NRPS  NAL+  M   +  + +AW+   NDP+I    + G+G  FC
Sbjct: 22  ALVEQRGHTLIVTMNRPSRRNALSGEM---MQIMVEAWDRVDNDPDIRCCILTGAGGYFC 78
Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL-GTHL-KPHVAILNGVTMGGGAGVSI 150
           AG D   L     +   +  KD          LL G  L KP +A + G  + GG  +  
Sbjct: 79  AGMD---LKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQ 135
Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACG 209
               RVA     F   E     +P  G++  L   +P  +   L LTG  +  AE    G
Sbjct: 136 GTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMG 195
Query: 210 LATH 213
           L  H
Sbjct: 196 LVGH 199

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 15/169 (8%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP+A NALN  +  +L    +A   D +I    + G+ R F AG D+  +        
Sbjct: 20  LNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAE------ 73
Query: 109 LEECKDFFRTLYSFIYLLGTHL----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
               KD   TL      L   L    KP +A +NG  +G G  +++     VA     F 
Sbjct: 74  ----KDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFG 129
Query: 165 TPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLAT 212
            PE  +G  P AG +  L    G  L   + L+G  +   +    GL +
Sbjct: 130 LPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVS 178

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 9/152 (5%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+  D  + +  E   ++    LNRP ALNAL+ +M  +L   +   END  +  + + G
Sbjct: 4   SMPVDSFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTG 63
Query: 87  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF------IYLLGTHLKPHVAILNGV 140
           +GRAFC+G D+  +      GK+   + +  T   +           T  KP +  +NG+
Sbjct: 64  TGRAFCSGADVKEI---PEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGI 120
Query: 141 TMGGGAGVSIPGTFRVACGKTVFATPETLIGF 172
             G G          +A  +  F  P   IG 
Sbjct: 121 CCGAGMDWVTTTDIVIASEQATFFDPHVSIGL 152

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 1/175 (0%)
Query: 41  KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSL 100
           K +  +  LN P   N L+      L +     E DP +  V + G G+AF AG D+  L
Sbjct: 6   KGHVAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFL 65
Query: 101 YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
                 G  E  +    +L    + + T+ KP VA +NG  + GGAG+++     V   +
Sbjct: 66  ERVTELGAEENYRHSL-SLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEE 124
Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 215
                 E  IGF     +   +  +     + L LTG  +   E  A GL    +
Sbjct: 125 ARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIA 179

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
            NRP   NA+NT    ++ +  KA   D +I  V + G+G  + +G D+ +       G 
Sbjct: 41  FNRPKKKNAINTEXYHEIXRALKAASKDDSIITV-LTGNGDYYSSGNDLTNFTDIPPGGV 99
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRV--ACGKTVFATP 166
            E+ K+    L  F+       KP +A++NG  +  G  V++ G F    A  +  F TP
Sbjct: 100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAV--GISVTLLGLFDAVYASDRATFHTP 157
Query: 167 ETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 213
            + +G  P+  +S+    +  P    E L + G KL   E  A GL T 
Sbjct: 158 FSHLGQSPEGCSSYTFPKIXSPAKATEXL-IFGKKLTAGEACAQGLVTE 205

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 98/252 (38%), Gaps = 30/252 (11%)
Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
           +Q +   S+TD++   +L   +   R   LNRP A NAL+  +  +        E D ++
Sbjct: 14  AQTQGPGSMTDEI---LLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDV 70
Query: 80  GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 139
             V + G+   FCAG D   L        L +    +  L           KP +  +NG
Sbjct: 71  DVVIITGADPVFCAGLD---LKELGGSSALPDISPRWPALT----------KPVIGAING 117
Query: 140 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGA 198
             + GG  +++     +A     FA     +G  P  G S  L    G  L   ++LTG 
Sbjct: 118 AAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGD 177
Query: 199 KLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI 257
            L+ A+ +  GL T     ++L      +   +V ++ + + A L  Y            
Sbjct: 178 YLSAADALRAGLVTEVVPHDQLLGAARAVAASIVGNNQNAVRALLTSY------------ 225
Query: 258 HRIDIVDKCFGL 269
           HRID      GL
Sbjct: 226 HRIDDAQTSAGL 237

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 13/210 (6%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           LNR    N+L+  +  +L  +      + N   V + G+G +AFCAG D+       N+ 
Sbjct: 24  LNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKE-RAGXNEE 82
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
           ++       RT    +  L    +P +A +NG+ +GGG  +S+   FR+A         E
Sbjct: 83  QVRHAVSXIRTTXEXVEQLP---QPVIAAINGIALGGGTELSLACDFRIAAESASLGLTE 139
Query: 168 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATH----YSVSEKLPL 222
           T +   P AG +  L  L G    + L  TG +++  E    GL       + + EK   
Sbjct: 140 TTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIE 199
Query: 223 IEEELGKLVTDDPSVIEACLEKYSDLVYPD 252
           I E   K+ ++ P  +    E  S+ +  D
Sbjct: 200 IAE---KIASNGPIAVRLAKEAISNGIQVD 226

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 30/245 (12%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+TD++   +L   +   R   LNRP A NAL+  +  +        E D ++  V + G
Sbjct: 4   SMTDEI---LLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITG 60
Query: 87  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGA 146
           +   FCAG D   L        L +    +  L           KP +  +NG  + GG 
Sbjct: 61  ADPVFCAGLD---LKELGGSSALPDISPRWPALT----------KPVIGAINGAAVTGGL 107
Query: 147 GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEM 205
            +++     +A     FA     +G  P  G S  L    G  L   ++LTG  L+ A+ 
Sbjct: 108 ELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADA 167
Query: 206 MACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD 264
           +  GL T     ++L    + +   +V ++ + + A L  Y            HRID   
Sbjct: 168 LRAGLVTEVVPHDQLLGAAQAVAASIVGNNQNAVRALLASY------------HRIDDAQ 215
Query: 265 KCFGL 269
              GL
Sbjct: 216 TSAGL 220

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 15/177 (8%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP+  NA+N     ++ + F     D +   V + G+G+ F AG D++ +   + Q K
Sbjct: 46  LNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLMDMASDILQPK 105
Query: 109 LEEC-------KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
            ++        +D          ++    KP +A ++G  +GGG  +      R      
Sbjct: 106 GDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDA 165
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEF-----LALTGAKLNGAEMMACGLATH 213
            F   E  +G   D G    L  LP  +G       LA T  K+   E +  GL + 
Sbjct: 166 FFQVKEVDVGLAADVGT---LQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSR 219

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+ PS  N+    +G +L   ++  ++DP +  + + G+  AFC+G  I +        +
Sbjct: 22  LHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPR 81
Query: 109 LEECKDFFRT-LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                DF  + +    + L T   P +A +NG  +G G  +++    R+   +  +A P+
Sbjct: 82  ---NPDFSASPVQPAAFELRT---PVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQ 135
Query: 168 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLA 211
              G  PDA A + L  L G  +   L LTGA  +    +  GLA
Sbjct: 136 VRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLA 180

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 9/182 (4%)
Query: 46  MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN 105
           +  LNRP  +NA+  ++     ++     +D ++  V + G+G+ FC+G D  S     +
Sbjct: 36  LVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPH 95
Query: 106 QGKLEECKDFFRT---LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTV 162
            G L +     R+   L   I  L    +P +A +NG  +GGG  +++    RVA     
Sbjct: 96  IGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAY 155
Query: 163 FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATHYSVSE 218
           F       G         YL  LP  +G   A    LTG  ++  E    GL +    SE
Sbjct: 156 FRAAGINNGLTASELGLSYL--LPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASE 213
Query: 219 KL 220
            L
Sbjct: 214 SL 215

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 11/169 (6%)
Query: 46  MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN 105
           +A LN   A NA ++ +   + +L    E D NI  V + G GR F AG DI        
Sbjct: 18  VATLNHAPA-NAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTE 76
Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165
             +  E     +  +  +       KP +A ++G  +GGG   +     R A        
Sbjct: 77  AKQATELAQLGQVTFERVEKCS---KPVIAAIHGAALGGGLEFAXSCHXRFATESAKLGL 133
Query: 166 PETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
           PE  +G  P    +     LP ++G+  A    LT   + GAE +  GL
Sbjct: 134 PELTLGLIPGFAGT---QRLPRYVGKAKACEXXLTSTPITGAEALKWGL 179

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 9/193 (4%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  LN+ N  M A+L +  K  E D  I  + + G+GR FCAG D+    +  N   
Sbjct: 30  LNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDL----NDRNVDP 85
Query: 109 LEECKDFFRTLYSFIYLLGTHL----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
                D   ++  F   L   L    KP +  +NGV  G GA +++ G   +A     F 
Sbjct: 86  TGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFV 145
Query: 165 TPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHYSVSEKLPLI 223
              + +G  PD G ++ L  + G      LAL G +L+  +    G+       E L   
Sbjct: 146 MAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADT 205
Query: 224 EEELGKLVTDDPS 236
            ++L + +   P+
Sbjct: 206 AQQLARHLATQPT 218

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 27/228 (11%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LV+     R   LNRP + NAL+  + +   +     +ND ++  V + G+   FCAG 
Sbjct: 11  LLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGL 70
Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+  L      G   E  D                KP +  +NG  + GG  +++     
Sbjct: 71  DLKEL------GDTTELPDISPKWPDMT-------KPVIGAINGAAVTGGLELALYCDIL 117
Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATHY 214
           +A     FA     +G  P  G S  L    G  L   ++LTG  L+  + +  GL T  
Sbjct: 118 IASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEV 177
Query: 215 SVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID 261
              + L      +   +V ++   + A L+ Y            HRID
Sbjct: 178 VAHDDLLTAARRVAASIVGNNQKAVRALLDSY------------HRID 213

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 15/177 (8%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NA+N     +L + F+    D +   V + G+G+ F +G D++ +   + Q  
Sbjct: 19  LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78
Query: 109 LEEC-------KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
            ++        +D          ++    KP +A ++G  +GGG  +      R      
Sbjct: 79  GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138
Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEF-----LALTGAKLNGAEMMACGLATH 213
            F   E  +G   D G    L  LP  +G       L  T  K+   E +  GL + 
Sbjct: 139 FFQVKEVDVGLAADVGT---LQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSR 192

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 75/195 (38%), Gaps = 24/195 (12%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+  DL   V VE        I+NRP A NA+N    A L   F  ++ D +     + G
Sbjct: 4   SMVSDL---VQVERNGPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCG 60
Query: 87  SGRAFCAGGDI-------VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 139
           +G  FCAG D+        +  H    G +   +                 KP +A ++G
Sbjct: 61  NGGTFCAGADLKAFGTAEANAVHRTGPGPMGPSRMMLS-------------KPVIAAVSG 107
Query: 140 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGA 198
             + GG  +++    RVA    VF       G     G +  L  L GH     + LTG 
Sbjct: 108 YAVAGGLELALWCDLRVAEQDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGR 167
Query: 199 KLNGAEMMACGLATH 213
            +   E +A GLA  
Sbjct: 168 AVQADEALAIGLANR 182

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 2/164 (1%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRA-FCAGGDIVSLYHFMNQG 107
           L+ P   N L+  +G  L +  +A  N+ +I  + ++   RA F +G  +  L    +  
Sbjct: 19  LDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQ 78
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                ++    L   +  + T  K  VA++NG   GGG  + +    R+A  +  F    
Sbjct: 79  SDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENF 138
Query: 168 TLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGL 210
             +G  PD GAS++L  + G+     L L G      E +  GL
Sbjct: 139 HKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGL 182

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQG 107
           +NRP   NA      A++   F    +D N+  + + G G  AFC+GGD     H    G
Sbjct: 28  INRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG 87
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
           + +  +     L   I ++    KP +A++ G  +GGG  +++     +A    +F    
Sbjct: 88  EDQIPRLNVLDLQRLIRIIP---KPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTG 144
Query: 168 TLIGFHPDAGASFYLSHLPGH 188
             +G       S YL+ + GH
Sbjct: 145 PKVGSFDAGYGSGYLARIVGH 165

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 52  PSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111
           P   NAL+     ++       E D ++G V + G+  AFCAG  +  +   +++G +  
Sbjct: 21  PRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIP--LDKG-VAG 77
Query: 112 CKDFFRT----LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
            +D FR      +  I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 168 TLIGFHPDAGASFYLSHLPG 187
             IG   D   S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVG 157

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP A NAL+  M A L + F     D ++  V +  SG+AFCAG       H + + +
Sbjct: 41  LNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAG-------HDLKEMR 93
Query: 109 LEECKDFFRTLYS----FIYLLGTHLKPHVAILNGVTMGGG 145
            E  ++++  L++     +  +     P +A ++G+    G
Sbjct: 94  AEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAG 134

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 52  PSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111
           P   NAL+     ++       E D ++G V + G+  AFCAG  +  +   +++G +  
Sbjct: 21  PRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIP--LDKG-VAG 77
Query: 112 CKDFFRT----LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
            +D FR      +  I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 168 TLIGFHPDAGASFYLSHLPG 187
             IG   D   S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVG 157

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           +NRP   NA       ++   F    +D NIG + + G+G +AFC+GGD     H    G
Sbjct: 27  INRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGDQKVRGHGGYVG 86
Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
           + E  +     L   I ++    KP +A++ G  +GGG  + +     +A    +F    
Sbjct: 87  EDEIPRLNVLDLQRLIRVI---PKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTG 143
Query: 168 TLIGFHPDAGASFYLSHLPGH 188
             +G       + YL+ + GH
Sbjct: 144 PKVGSFDGGYGAGYLARIVGH 164

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 12/189 (6%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LN P   NAL+T + ++L++  +   +DP +  V +  +G  FCAG D   L    + G 
Sbjct: 26  LNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGAD---LSEAGSGGS 82
Query: 109 LEECKDF----FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
                D      R + + +  +     P +A ++G    GG G+       VA  ++ FA
Sbjct: 83  PSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFA 142
Query: 165 TPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIE 224
             E  IG  P   +   L  L         LTG K +       GL T    +E L   +
Sbjct: 143 LTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARRAEEIGLITM--AAEDL---D 197
Query: 225 EELGKLVTD 233
             + +LVTD
Sbjct: 198 AAIDQLVTD 206

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 9/166 (5%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM---N 105
           +NRP A NAL   +   + K     + + ++  V ++G+   F AG D+     F+   N
Sbjct: 20  INRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPN 79
Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165
            G   +   F   L S   L     KP +  + GV +G G  + +      A    +F  
Sbjct: 80  AGPAGQVPPFV-LLKSAARL----SKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQI 134
Query: 166 PETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGL 210
           P   +G  P+ GAS  L    G H    L  T  K N    +  GL
Sbjct: 135 PFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGL 180

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 52  PSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE 111
           P   NAL+     ++       E D ++G V + G+  AFCAG  +  +   +++G +  
Sbjct: 21  PRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIP--LDKG-VAG 77
Query: 112 CKDFFRT----LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
            +D FR         I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 168 TLIGFHPDAGASFYLSHLPG 187
             IG   D   S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVG 157

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 16/234 (6%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L RP   NALN+ +  +L +  +    D +   + + G G AFCAG D+ S   F     
Sbjct: 36  LQRPERRNALNSQLVEELTQAIRK-AGDGSARAIVLTGQGTAFCAGADL-SGDAF----- 88
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                D+   L      +     P V  +NG  +G G  +++    RV      F  P +
Sbjct: 89  ---AADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTS 145
Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 227
             G   D  +   LS L GH     + L+  KL     +  G+A              E+
Sbjct: 146 KYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEI 205
Query: 228 GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG-LDTVEEIIDSLE 280
            +L    P  I+      +D    ++    H+ ++ DK +G  D +E  +  +E
Sbjct: 206 ARLA---PLAIQHAKRVLNDDGAIEEAWPAHK-ELFDKAWGSQDVIEAQVARME 255

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 11/167 (6%)
Query: 32  LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF 91
           + ++VL+E +    +  +NRP A NA+N  +   L       ++  ++    + G+G  F
Sbjct: 5   MADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNF 64
Query: 92  CAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151
           CAG D+ +      +  L E    F  +           KP +A + G  + GG  + + 
Sbjct: 65  CAGMDLKAFVS--GEAVLSERGLGFTNV--------PPRKPIIAAVEGFALAGGTELVLS 114
Query: 152 GTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTG 197
               VA     F  PE   G    AG    L + +P  +   LALTG
Sbjct: 115 CDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTG 161

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 9/167 (5%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NALN  + A L        +   I  V + G G  F AG D+  L        
Sbjct: 31  LNRPKKRNALNDGLMAALKDCLTDIPD--QIRAVVIHGIGDHFSAGLDLSELRERDATEG 88
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           L   + + R      Y       P +A L G  +GGG  ++     RVA     +A PE 
Sbjct: 89  LVHSQTWHRVFDKIQYCR----VPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEG 144
Query: 169 LIGFHPDAGASFYLSHLPG--HLGEFLALTGAKLNGAEMMACGLATH 213
             G     G S  L  L G   + + + LTG   + AE +  G + +
Sbjct: 145 SRGIFVGGGGSVRLPRLIGVARMADMM-LTGRVYSAAEGVVHGFSQY 190

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 11/202 (5%)
Query: 40  GKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIV 98
           G A+S   I LNRP A NA N  +  +L+  +     D  +  + ++ +G+ F AG D+ 
Sbjct: 28  GVADSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDLR 87
Query: 99  SLYHFMNQGKLE-ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVA 157
                  +  LE   +   R    +        KP +A + G  + GG  +  P    +A
Sbjct: 88  GGGEVPEKISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLILA 147
Query: 158 CGKTVFATPETLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATH 213
               +F+ P  L+G     G   Y  H     P    E L  TG  L   E    G+   
Sbjct: 148 SDDALFSDPVALMGI----GGVEYHGHTWELGPRKAKEIL-FTGRALTAEEAERTGMVNR 202
Query: 214 YSVSEKLPLIEEELGKLVTDDP 235
               ++L     EL + +   P
Sbjct: 203 VVARDELDAQTRELAEQIATMP 224

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP A NA N  +  +L+  +     D ++  + ++ +G+ F AG D+       ++  
Sbjct: 35  LNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLT 94
Query: 109 LE-----ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
           LE     E + +    YS  +      KP +A + G  + GG  +  P    +A    +F
Sbjct: 95  LEFIYAHESRRYLE--YSLRWR--NVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALF 150
Query: 164 ATPETLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK 219
           + P  L+    D G   Y  H     P    E L  TG  +   E+   G+       ++
Sbjct: 151 SDPVVLM----DIGGVEYHGHTWELGPRKAKEIL-FTGRAMTAEEVAQTGMVNRVVPRDR 205
Query: 220 L 220
           L
Sbjct: 206 L 206

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
Query: 45  RMAILNRPSALNALNTNMGAKLNK--LFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYH 102
           R  +L+ P   N L+  M   L    L  A  ND  +  +S +G    F +G D+  L  
Sbjct: 44  RNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP--VFSSGHDLKELTE 101
Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTV 162
              QG+ +   + F+T    +  +  H  P +A++NG+    G  +       VA  K+ 
Sbjct: 102 --EQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSS 158
Query: 163 FATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 210
           FATP   +G             +P  +   +  TG  ++  E +  GL
Sbjct: 159 FATPGVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGL 206

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 16/189 (8%)
Query: 26  SSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMK 85
           S +  D   +VLVE +    +  +NRP A N++N  +   L       + D  +    + 
Sbjct: 7   SELNGDTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILT 66
Query: 86  GSGRAFCAGGDIVSLYHFMN---QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142
           G+G +FCAG D+ +     N   +G+               +      KP +A + G  +
Sbjct: 67  GAGGSFCAGMDLKAFARGENVVVEGR------------GLGFTERPPAKPLIAAVEGYAL 114
Query: 143 GGGAGVSIPGTFRVACGKTVFATPET-LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLN 201
            GG  +++     VA   + F  PE          G       +P  +   LALTG  L+
Sbjct: 115 AGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLS 174
Query: 202 GAEMMACGL 210
                A G+
Sbjct: 175 AERAHALGM 183

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 1/165 (0%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +NR S  NA +  +  ++     +  ND N+  + +K +G+ F AG D+  +    N  +
Sbjct: 19  MNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTE 78
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            E  +D    L + +Y +    KP +A++ G   GGGAG++      +A     F   E 
Sbjct: 79  EENLEDSL-VLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEV 137
Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 213
            +G  P   + + +  +     + L ++    +     +  L  H
Sbjct: 138 KLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQH 182

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L RP  LNAL     A L  L         +  + + G GR FC+GGD+  +        
Sbjct: 32  LARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSXD 91
Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                DF R     +  +     P +A L+GV  G GA +++   FRVA   T FA   T
Sbjct: 92  TARLLDFNRXTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFT 151
Query: 169 LIGFH-PDAGASFYLSHLP--GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEE 225
            +G    D GA++ L  +   GH    L L G  +   E    GL +  +   +      
Sbjct: 152 RVGLSGGDXGAAYLLPRVVGLGHATRLLXL-GDTVRAPEAERIGLISELTEEGRADEAAR 210
Query: 226 ELGKLVTDDPSVIEA 240
            L + + D P++  A
Sbjct: 211 TLARRLADGPALAHA 225

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-136
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	1e-130
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	3e-31
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	7e-31
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	8e-31
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	3e-30
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	3e-30
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	5e-30
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	7e-30
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	8e-30
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	3e-29
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	4e-29
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	5e-29
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	6e-29
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	8e-29
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	1e-28
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	1e-28
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	1e-27
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	2e-27
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	1e-26
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	5e-26
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	1e-25
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	1e-25
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	2e-25
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	3e-25
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	5e-25
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	7e-25
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	8e-25
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	8e-25
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	2e-24
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	2e-24
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	2e-24
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	6e-24
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	7e-24
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	8e-24
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	1e-23
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	1e-23
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	1e-23
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	2e-23
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	2e-23
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	3e-23
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	5e-23
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	8e-23
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	1e-22
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	1e-22
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	1e-22
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	2e-22
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	2e-22
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	3e-22
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	6e-22
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	1e-21
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	1e-21
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	2e-21
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	3e-21
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	4e-21
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	9e-21
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	2e-20
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	3e-20
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	6e-20
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	2e-19
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	2e-19
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	3e-19
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	6e-19
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	8e-19
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	1e-18
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	3e-18
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	6e-18
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	1e-17
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	2e-17
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	8e-15
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	1e-14
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	1e-12
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score =  390 bits (1004), Expect = e-136
 Identities = 123/320 (38%), Positives = 181/320 (56%), Gaps = 12/320 (3%)

Query: 31  DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-R 89
           D   +VL+  K  + +  LNRP  LNAL  NM  ++    K WE DP    + +KG+G +
Sbjct: 3   DAAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62

Query: 90  AFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVS 149
           AFCAGGDI  +       + +    FFR  Y     +G+  KP+VA+++G+TMGGG G+S
Sbjct: 63  AFCAGGDIRVISEAEKAKQ-KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLS 121

Query: 150 IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACG 209
           + G FRVA  K +FA PET IG  PD G  ++L  L G LG FLALTG +L G ++   G
Sbjct: 122 VHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAG 181

Query: 210 LATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNS---VIHRIDIVDKC 266
           +ATH+  SEKL ++EE+L  L +     I + LE Y      D++    +   +D ++ C
Sbjct: 182 IATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSC 241

Query: 267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV 326
           F  +TVEEII++L+ +       +    L+++ + SP SLK++LR + EG  +T  E L 
Sbjct: 242 FSANTVEEIIENLQQDG----SSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLT 297

Query: 327 REYRMSLQGVSRLISGDFYE 346
            EYR+S   +      DF+E
Sbjct: 298 MEYRLSQACMRG---HDFHE 314

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score =  377 bits (970), Expect = e-130
 Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 18/343 (5%)

Query: 16  LRALSQHRTSSSVTDDLCNQVLVEGKANS-RMAILNRPSALNALNTNMGAKLNKLFKAWE 74
           +  L      S  T ++  Q L         +  LN   ALNAL+ +M   +      W+
Sbjct: 23  MTNLVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWK 82

Query: 75  NDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK---LEECKDFFRTLYSFIYLLGTHL 130
            DP I  V + GSG +AFCAGGD+ +LYH     K    E  K FF   Y   YLL T+ 
Sbjct: 83  KDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYG 142

Query: 131 KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG 190
           KP +   +G+ MGGG G+    + +V    +  A PE  IG +PD G S++L+ +PG +G
Sbjct: 143 KPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPGKMG 202

Query: 191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDP-----SVIEACLEKY 245
            FL LT   +N A+    GLA HY   +   L+ + +  L   D        ++  + + 
Sbjct: 203 LFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINEL 262

Query: 246 S-DLVYPDKNSVI-HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASP 303
           S  +  P  +SV+    +++D+     ++ +I+  + + ++  ++ W       +   SP
Sbjct: 263 SNQVDIPKGDSVLAESQEMIDRLMA-GSLTDIVTRMSTLST--DEAWLSKACATMLAGSP 319

Query: 304 LSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 346
           +S  ++    + G   +  +C   E  +S+   ++   GDF E
Sbjct: 320 ISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAK---GDFCE 359

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  116 bits (294), Expect = 7e-31
 Identities = 60/168 (35%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP  LNA    M A++ K  K    DPN+  V + G+GRAFCAG D+  +   M+ G 
Sbjct: 18  LNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGD 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           +      +  +   ++ L    KP VA +NG   G G  +++   FR+   K  FA    
Sbjct: 78  VLR--SRYAPMMKALHHLE---KPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFI 132

Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
            +G  PDAG  +YL  L G    L   LA+ G K+   E  A GLAT 
Sbjct: 133 HVGLVPDAGHLYYLPRLVGRAKALE--LAVLGEKVTAEEAAALGLATK 178

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  116 bits (294), Expect = 8e-31
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 12/171 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +  P   NAL+     ++       E D ++G V + G+  AFCAG  +           
Sbjct: 18  IKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLRE---IPLDKG 74

Query: 109 LEECKDFFRTLYSFIYLLGTHL----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 164
           +   +D FR    + + +   +    +P +A +NGV  GGG G+S+     +      F 
Sbjct: 75  VAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFV 134

Query: 165 TPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLAT 212
                IG   D   S+ L+ + G    +   L LT   L   E    GL +
Sbjct: 135 CAWHTIGIGNDTATSYSLARIVGMRRAME--LMLTNRTLYPEEAKDWGLVS 183

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  115 bits (291), Expect = 3e-30
 Identities = 34/196 (17%), Positives = 57/196 (29%), Gaps = 13/196 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L  P  LNAL       L +L +  + + ++ F  ++ SGR F +G D   +        
Sbjct: 24  LINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDT 83

Query: 109 LEECKD-------FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
            +   +       F             H K  +  LNG  +G  A +        +    
Sbjct: 84  NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK 143

Query: 162 V-FATPETLIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSE 218
           V    P   +G   + G +  L    G     E   +         M   G  +      
Sbjct: 144 VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYE-CLMFNKPFKYDIMCENGFISK--NFN 200

Query: 219 KLPLIEEELGKLVTDD 234
                 E     V ++
Sbjct: 201 MPSSNAEAFNAKVLEE 216

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  114 bits (289), Expect = 3e-30
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 15/168 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+RP  LNA++T M  +L+   +  E D ++  V + G+GRAFC+GGD+         G 
Sbjct: 21  LDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTG---GDTAGA 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            +      R + S         KP +A ++G  +G G  +++     VA   + F    T
Sbjct: 78  ADAANRVVRAITSL-------PKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFT 130

Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
            +G  PD GAS  L  L G        +A+T  K++ A     G+ +H
Sbjct: 131 RVGLMPDGGASALLPLLIGRARTSR--MAMTAEKISAATAFEWGMISH 176

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  114 bits (288), Expect = 5e-30
 Identities = 42/168 (25%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNA N  +     +      +DP +  V + GSGR F AG D+        +  
Sbjct: 21  LNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAE---MQARIT 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                +        I  L    KP +  +NG+ +G GA +                 P T
Sbjct: 78  DPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFT 137

Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
            +G  P+A +S+ L  L G        L ++   ++  E +  GL   
Sbjct: 138 SLGVAPEAASSYLLPQLVGRQNAAW--LLMSSEWIDAEEALRMGLVWR 183

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  114 bits (287), Expect = 7e-30
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 6/169 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRA-FCAGGDIVSLYHFMNQG 107
           L+ P   N L+  +G  L +  +A  N+ +I  + ++   RA F +G  +  L    +  
Sbjct: 19  LDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQ 78

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                ++    L   +  + T  K  VA++NG   GGG  + +    R+A  +  F    
Sbjct: 79  SDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENF 138

Query: 168 TLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
             +G  PD GAS++L  + G+   +   L L G      E +  GL   
Sbjct: 139 HKMGISPDLGASYFLPRIIGYEQTMN--LLLEGKLFTSEEALRLGLIQE 185

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  114 bits (288), Expect = 8e-30
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 4/167 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
            NRP   NA+NT M  ++ +  KA   D +I  V + G+G  + +G D+ +       G 
Sbjct: 41  FNRPKKKNAINTEMYHEIMRALKAASKDDSIITV-LTGNGDYYSSGNDLTNFTDIPPGGV 99

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            E+ K+    L  F+       KP +A++NG  +G    +        A  +  F TP +
Sbjct: 100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFS 159

Query: 169 LIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATH 213
            +G  P+  +S+    +       E + + G KL   E  A GL T 
Sbjct: 160 HLGQSPEGCSSYTFPKIMSPAKATE-MLIFGKKLTAGEACAQGLVTE 205

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  112 bits (283), Expect = 3e-29
 Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +NRP A NAL   +   + K     + + ++  V ++G+   F AG D+     FM   +
Sbjct: 20  INRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKD---FMGFVQ 76

Query: 109 LEECKDFFRTLY-SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                   +      +       KP +  + GV +G G  + +      A    +F  P 
Sbjct: 77  NPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPF 136

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATH 213
             +G  P+ GAS  L    G+     L  T  K N    +  GL   
Sbjct: 137 VSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNE 183

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  111 bits (281), Expect = 4e-29
 Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +   S+ N  + ++   L   F     +     V + G G  F +G        F+ +  
Sbjct: 18  MKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASK----EFLIRKT 73

Query: 109 LEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166
             E +  D    +            P +A + G + GGG  + +   F V   ++V+AT 
Sbjct: 74  RGEVEVLDLSGLILDC-------EIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATN 126

Query: 167 ETLIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACGLATH 213
               GF P    S  L      LG      +  TG    G E+   G+   
Sbjct: 127 FMKYGFTPVGATSLILREK---LGSELAQEMIYTGENYRGKELAERGIPFP 174

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  112 bits (282), Expect = 5e-29
 Identities = 48/169 (28%), Positives = 68/169 (40%), Gaps = 6/169 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L RP  LNAL     A L  L         +  + + G GR FC+GGD+  +        
Sbjct: 32  LARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMD 91

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                DF R     +  +     P +A L+GV  G GA +++   FRVA   T FA   T
Sbjct: 92  TARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFT 151

Query: 169 LIGFHP-DAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
            +G    D GA++ L  + G        L + G  +   E    GL + 
Sbjct: 152 RVGLSGGDMGAAYLLPRVVGLGHATR--LLMLGDTVRAPEAERIGLISE 198

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  112 bits (282), Expect = 6e-29
 Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 7/182 (3%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           ++V+ K +    I    R +  NALNT +  ++     +   D     V    +G  FC 
Sbjct: 25  IVVK-KEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCC 82

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           G D       +   +     +   T+ +F+       KP V  +NG  +G GA +     
Sbjct: 83  GLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 142

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLA 211
              A  K  F TP T  G  PD  +S     + G     E + + G KL   E  A GL 
Sbjct: 143 LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANE-MLIAGRKLTAREACAKGLV 201

Query: 212 TH 213
           + 
Sbjct: 202 SQ 203

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  111 bits (279), Expect = 8e-29
 Identities = 40/183 (21%), Positives = 65/183 (35%), Gaps = 9/183 (4%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           ++V  K +    I    + S  N+LN  +  ++         D     V +   G  FC 
Sbjct: 7   IVVR-KQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCC 64

Query: 94  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 153
           G D +     +   +  E       + +F+       KP +  +NG  +G GA +     
Sbjct: 65  GLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCD 124

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 210
              A  K  F TP T  G  PD  ++     + G        + L+G KL   E    GL
Sbjct: 125 VVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANE--MLLSGRKLTAQEACGKGL 182

Query: 211 ATH 213
            + 
Sbjct: 183 VSQ 185

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  111 bits (280), Expect = 1e-28
 Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 11/205 (5%)

Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
           +Q +   S+  D+  ++ V      R+  LNRP +LN++N ++   L +L++   +DP  
Sbjct: 14  AQTQGPGSMVYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTA 73

Query: 80  GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILN 138
               + G+GRAF AGGD     +        + +         I L       P VA +N
Sbjct: 74  RAAVITGAGRAFSAGGDFG---YLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVN 130

Query: 139 GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLAL 195
           G  +G G  +               A P   +G     G                   AL
Sbjct: 131 GPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE--YAL 188

Query: 196 TGAKLNGAEMMACGLATHYSVSEKL 220
           TG +++    +  GLA H  V++  
Sbjct: 189 TGTRISAQRAVELGLANH--VADDP 211

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  112 bits (281), Expect = 1e-28
 Identities = 48/186 (25%), Positives = 64/186 (34%), Gaps = 10/186 (5%)

Query: 36  VLVEGKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAG 94
           VL E        I  NR   LNA   ++ A         E DP I  + + G GR FCAG
Sbjct: 31  VLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAG 90

Query: 95  GDIVSLYHFMNQGKL---EECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSI 150
             + S        K     +  +    +        T L KP +A +NG  +G G   ++
Sbjct: 91  AYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQAL 150

Query: 151 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMA 207
               R A     FA      G   + G S+ L  L      L   L L+G      E   
Sbjct: 151 MCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALD--LLLSGRTFLAEEAAQ 208

Query: 208 CGLATH 213
            GL   
Sbjct: 209 LGLVKE 214

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  108 bits (272), Expect = 1e-27
 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 8/168 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+ P  LN++   M   L  ++   + DP++  V ++G G+AF +GG    +      G 
Sbjct: 29  LDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDE--TIGD 85

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            E      R     +  L    KP V+ + G  +G G  V++     VA          T
Sbjct: 86  YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHT 145

Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
            +G      A+     L G          LT   L+G E    GL + 
Sbjct: 146 KLGVAAGDHAAICWPLLVGMAKAKY--YLLTCETLSGEEAERIGLVST 191

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  107 bits (269), Expect = 2e-27
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+ PS  N+    +G +L   ++  ++DP +  + + G+  AFC+G  I +        +
Sbjct: 22  LHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPR 81

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             +       +    + L     P +A +NG  +G G  +++    R+   +  +A P+ 
Sbjct: 82  NPD--FSASPVQPAAFELR---TPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQV 136

Query: 169 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 213
             G  PDA A + L  L G        L LTGA  +    +  GLA  
Sbjct: 137 RFGVAPDALAHWTLPRLVGTAVAAE--LLLTGASFSAQRAVETGLANR 182

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  105 bits (265), Expect = 1e-26
 Identities = 34/181 (18%), Positives = 55/181 (30%), Gaps = 7/181 (3%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +         + I  R   LNA+   +   L ++++  E    +  V ++G G  F AGG
Sbjct: 12  LAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGG 71

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
               +     +   E     F      +       +P VA +  V +G G  +++     
Sbjct: 72  SFGLIEEM--RASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIA 129

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLAT 212
           V    T        +G      A      L G          L    L G E    GL  
Sbjct: 130 VVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKY--HLLLNEPLTGEEAERLGLVA 187

Query: 213 H 213
            
Sbjct: 188 L 188

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  103 bits (260), Expect = 5e-26
 Identities = 41/197 (20%), Positives = 68/197 (34%), Gaps = 12/197 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
            +RP A N +N  +  +  ++    E    +  V ++G    FC G D   +Y  M +G 
Sbjct: 22  FHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRG- 79

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             +       LY     L T     ++ + G    GG G        +A     F+  E 
Sbjct: 80  -RKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSEL 138

Query: 169 LIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACGLATHYSVSEKLPLIE 224
           L G +P     F    L   +G      + L    ++  E    GL      +E   L+ 
Sbjct: 139 LFGLYPACVLPF----LIRRIGRQKAHYMTLMTKPISVQEASEWGLI-DAFDAESDVLLR 193

Query: 225 EELGKLVTDDPSVIEAC 241
           + L +L   +   I   
Sbjct: 194 KHLLRLRRLNKKGIAHY 210

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  103 bits (260), Expect = 1e-25
 Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 9/169 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSL--YHFMNQ 106
           LNRP  +NA+  ++     ++     +D ++  V + G+G+ FC+G D  S      +  
Sbjct: 39  LNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGG 98

Query: 107 GKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 165
                       L   + L    + +P +A +NG  +GGG  +++    RVA     F  
Sbjct: 99  LTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRA 158

Query: 166 PETLIGFHP-DAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 210
                G    + G S+ L    G        + LTG  ++  E    GL
Sbjct: 159 AGINNGLTASELGLSYLLPRAIGTSRASD--IMLTGRDVDADEAERIGL 205

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  102 bits (257), Expect = 1e-25
 Identities = 37/183 (20%), Positives = 61/183 (33%), Gaps = 12/183 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
           V  E     R+  L+ P+  N  +  +   +         D ++  V + G   R+F AG
Sbjct: 2   VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAG 61

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           GD   +        +EE  D    LY  +  +    KP +A ++G  +G G   ++    
Sbjct: 62  GDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVN---KPTIAAVDGYAIGMGFQFALMFDQ 118

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
           R+      F  PE   G     GA+     L    G             L+    +   L
Sbjct: 119 RLMASTANFVMPELKHGIGCSVGAAI----LGFTHGFSTMQEIIYQCQSLDAPRCVDYRL 174

Query: 211 ATH 213
              
Sbjct: 175 VNQ 177

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  102 bits (256), Expect = 2e-25
 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 20/182 (10%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LV+     R   LNRP + NAL+  + +   +     +ND ++  V + G+   FCAG 
Sbjct: 11  LLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGL 70

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+       +  +L +    +  +           KP +  +NG  + GG  +++     
Sbjct: 71  DLKE---LGDTTELPDISPKWPDMT----------KPVIGAINGAAVTGGLELALYCDIL 117

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
           +A     FA     +G  P  G S  L      +G  LA    LTG  L+  + +  GL 
Sbjct: 118 IASENAKFADTHARVGLMPTWGLSVRLPQK---VGVGLARRMSLTGDYLSAQDALRAGLV 174

Query: 212 TH 213
           T 
Sbjct: 175 TE 176

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  101 bits (254), Expect = 3e-25
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 7/167 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           ++         +    +L   F     D     V + G+G +FC   D  S     N G 
Sbjct: 31  VHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTS----FNLGT 86

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPE 167
             +  +        +  L +   P +A +NG  +     + +     +A     F   P 
Sbjct: 87  PHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGP-VTNAPEIPVMSDIVLAAESATFQDGPH 145

Query: 168 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213
              G  P  GA     H+ G   G +  LTG +L+    +  G    
Sbjct: 146 FPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNE 192

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  101 bits (253), Expect = 5e-25
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 10/169 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP+  NA +  M  +L      +E D ++    + G G  F AG D+ S+   +  G 
Sbjct: 24  LNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA 83

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
               +            L    KP +  ++G  +  G  +++     +A     FA  E 
Sbjct: 84  SLTPEGGINPWQVDGRQLS---KPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEV 140

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
             G +P  GA+      P   G   A    LT    +  E    G+   
Sbjct: 141 NRGIYPFGGATI---RFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQE 186

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  100 bits (252), Expect = 7e-25
 Identities = 27/167 (16%), Positives = 46/167 (27%), Gaps = 6/167 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           ++   +          +    F     D +   V + GSG A+ A  D        +   
Sbjct: 39  MHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFP---SLGDVTN 95

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPE 167
             E    +      +  L     P ++ +NG  +       +     +A   TVF   P 
Sbjct: 96  PREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHSE-YILTTDIILASENTVFQDMPH 154

Query: 168 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 213
              G  P  G         G   G +   T  KL   +     +   
Sbjct: 155 LNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHE 201

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  100 bits (252), Expect = 8e-25
 Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 9/194 (4%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G + + G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATH 213
            +   +  F   E   G  P    S  ++   GH       +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGL--- 187

Query: 214 YSVSEKLPLIEEEL 227
             V+E +PL   +L
Sbjct: 188 --VNESVPL--AQL 197

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  100 bits (252), Expect = 8e-25
 Identities = 43/197 (21%), Positives = 70/197 (35%), Gaps = 15/197 (7%)

Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
               T  + T    + + +          L RP   NALN+ +  +L +  +    D + 
Sbjct: 7   HHMGTLEAQTQGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRK-AGDGSA 65

Query: 80  GFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 139
             + + G G AFCAG D+             +  D    L+  +        P V  +NG
Sbjct: 66  RAIVLTGQGTAFCAGADLSG----DAFA--ADYPDRLIELHKAMDASP---MPVVGAING 116

Query: 140 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALT 196
             +G G  +++    RV      F  P +  G   D  +   LS L GH       + L+
Sbjct: 117 PAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA--MLLS 174

Query: 197 GAKLNGAEMMACGLATH 213
             KL     +  G+A  
Sbjct: 175 AEKLTAEIALHTGMANR 191

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 99.2 bits (248), Expect = 2e-24
 Identities = 39/167 (23%), Positives = 59/167 (35%), Gaps = 9/167 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           ++    +N L   M   LN+   A + D N+G + + G+ R F  G D+      +  G+
Sbjct: 20  MDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDL----KVLTSGE 73

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            +   D  R  +   Y L ++ KP V    G  +  GA +   G  RVA         E 
Sbjct: 74  AKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEV 133

Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 213
            IG      A   L     P    +  A       G   +A G    
Sbjct: 134 AIGMTIPYAAMEVLKLRLTPSAYQQ-AAGLAKTFFGETALAAGFIDE 179

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 99.1 bits (248), Expect = 2e-24
 Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LN P   N L+  M   L +     E DP +  V + G G+AF AG D+  L   + +  
Sbjct: 14  LNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER-VTELG 72

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            EE      +L    + + T+ KP VA +NG  + GGAG+++     V   +      E 
Sbjct: 73  AEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEV 132

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
            IGF   A  S  L      +GE  A    LTG  +   E  A GL   
Sbjct: 133 KIGFVA-ALVSVILVRA---VGEKAAKDLLLTGRLVEAREAKALGLVNR 177

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 99.2 bits (248), Expect = 2e-24
 Identities = 39/183 (21%), Positives = 61/183 (33%), Gaps = 12/183 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V  E + +  +  L+R    NA ++ M A L      +E         +   G  F AG 
Sbjct: 14  VTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGL 73

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
           D++     +          +         ++     KP V  + G     G  + +    
Sbjct: 74  DLME----LAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADI 129

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
            VA   T FA  E L G  P  G++      P   G   A    LTG + +  E +   L
Sbjct: 130 AVAARGTRFAHLEVLRGIPPLGGSTV---RFPRAAGWTDAMRYILTGDEFDADEALRMRL 186

Query: 211 ATH 213
            T 
Sbjct: 187 LTE 189

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 98.0 bits (245), Expect = 6e-24
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 15/183 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +    +    +  L RP  LNAL+  M A++    +A++ +  +  + + G GRAF AG 
Sbjct: 7   IAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGA 66

Query: 96  DIVSLYHFMNQGKLEECKDF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
           DI      M +      +       +  + ++     P +A +NG+ +GGG  +++    
Sbjct: 67  DIQE----MAKDDPIRLEWLNQFADWDRLSIVK---TPMIAAVNGLALGGGFELALSCDL 119

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
            VA     F  PE  +G  P AG +  L+ L   +G   A     TGA+++  E    G+
Sbjct: 120 IVASSAAEFGFPEVNLGVMPGAGGTQRLTKL---IGPKRALEWLWTGARMSAKEAEQLGI 176

Query: 211 ATH 213
              
Sbjct: 177 VNR 179

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 98.1 bits (245), Expect = 7e-24
 Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 7/166 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDI--VSLYHFMNQ 106
           L R  A + L+  M A L+   +    D ++  + + G GR FCAG D+  +  +     
Sbjct: 22  LGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPD 80

Query: 107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 166
                  D F    + +  L    KP +A++ G+    G  +        A     F  P
Sbjct: 81  EGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLP 140

Query: 167 ETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
               G      A   +S +     + E +ALTGA  +    +A GL
Sbjct: 141 GVQNGGFCTTPAV-AVSRVIGRRAVTE-MALTGATYDADWALAAGL 184

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 98.0 bits (245), Expect = 8e-24
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 5/167 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +NR S  NA +  +  ++     +  ND N+  + +K +G+ F AG D+  +    N  +
Sbjct: 19  MNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTE 78

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            EE  +    L + +Y +    KP +A++ G   GGGAG++      +A     F   E 
Sbjct: 79  -EENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEV 137

Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 213
            +G  P A  S Y+            L ++    +     +  L  H
Sbjct: 138 KLGLIP-AVISPYVVRAIGERAAKM-LFMSAEVFDATRAYSLNLVQH 182

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 97.6 bits (244), Expect = 1e-23
 Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 16/203 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDI--------VSL 100
           LN P   NAL+T + ++L++  +   +DP +  V +  +G  FCAG D+         S 
Sbjct: 26  LNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSS 85

Query: 101 YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 160
            + M   +  E     R +            P +A ++G    GG G+       VA  +
Sbjct: 86  AYDMAVERAREMAALMRAIVES-------RLPVIAAIDGHVRAGGFGLVGACDIAVAGPR 138

Query: 161 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 220
           + FA  E  IG  P   +   L  L         LTG K +       GL    +  +  
Sbjct: 139 SSFALTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARRAEEIGLI-TMAAEDLD 197

Query: 221 PLIEEELGKLVTDDPSVIEACLE 243
             I++ +  +    P  + A   
Sbjct: 198 AAIDQLVTDVGRGSPQGLAASKA 220

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 97.2 bits (243), Expect = 1e-23
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 15/185 (8%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
           + V+      +    LNR    N+L+  +  +L  +      + N   V + G+G +AFC
Sbjct: 10  ISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFC 68

Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
           AG D+            E+ +     + + + ++    +P +A +NG+ +GGG  +S+  
Sbjct: 69  AGADLKE----RAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLAC 124

Query: 153 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMAC 208
            FR+A         ET +   P AG +  L  L   +G   A     TG +++  E    
Sbjct: 125 DFRIAAESASLGLTETTLAIIPGAGGTQRLPRL---IGVGRAKELIYTGRRISAQEAKEY 181

Query: 209 GLATH 213
           GL   
Sbjct: 182 GLVEF 186

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 97.6 bits (244), Expect = 1e-23
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 14/203 (6%)

Query: 18  ALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP 77
           +++ + + +    +     LVE + ++ +  +NRPS  NAL+  M   + + +   +NDP
Sbjct: 4   SMAPNTSETPANGESGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDP 63

Query: 78  NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTHL-KPHV 134
           +I    + G+G  FCAG D+ +      +    +      +        L G  L KP +
Sbjct: 64  DIRCCILTGAGGYFCAGMDLKA----ATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLI 119

Query: 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 194
           A + G  + GG  +      RVA     F   E     +P  G++     L   +   +A
Sbjct: 120 AAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAV---RLVRQIPYTVA 176

Query: 195 ----LTGAKLNGAEMMACGLATH 213
               LTG  +  AE    GL  H
Sbjct: 177 CDLLLTGRHITAAEAKEMGLVGH 199

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 97.2 bits (243), Expect = 2e-23
 Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 16/187 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NA+N     +L + F+    D +   V + G+G+ F +G D++ +   + Q  
Sbjct: 19  LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78

Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
            ++       L   I              KP +A ++G  +GGG  +      R      
Sbjct: 79  GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138

Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLG---EFLALTGAKLNGAEMMACGLATHYSVSE 218
            F   E  +G   D G    L  + G+     E L  T  K+   E +  GL     VS 
Sbjct: 139 FFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNE-LTFTARKMMADEALDSGL-----VSR 192

Query: 219 KLPLIEE 225
             P  + 
Sbjct: 193 VFPDKDV 199

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 96.9 bits (242), Expect = 2e-23
 Identities = 48/193 (24%), Positives = 73/193 (37%), Gaps = 17/193 (8%)

Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG 86
           S+++++   V VE        ILNRP A NA++    A L   F  ++ DP      + G
Sbjct: 4   SMSEEMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWG 63

Query: 87  SGRAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
               FCAG D+      M   +  E           S + L     KP +A ++G  + G
Sbjct: 64  DNGTFCAGADL----KAMGTDRGNELHPHGPGPMGPSRLRL----SKPVIAAISGHAVAG 115

Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKL 200
           G  +++    RV     V        G     G +     LP  +G   A    LTG  +
Sbjct: 116 GIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTI---RLPRLIGHSRAMDLILTGRPV 172

Query: 201 NGAEMMACGLATH 213
           +  E +  GL   
Sbjct: 173 HANEALDIGLVNR 185

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 96.5 bits (241), Expect = 3e-23
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 13/182 (7%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG + + GS +AF AG 
Sbjct: 27  ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 86

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           DI       +    +     F   +  +  +     P +A + G  +GGG  +++     
Sbjct: 87  DIKE---MADLTFADAFTADFFATWGKLAAVR---TPTIAAVAGYALGGGCELAMMCDVL 140

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
           +A     F  PE  +G  P  G S  L+     +G+  A    LTG  ++ AE    GL 
Sbjct: 141 IAADTAKFGQPEIKLGVLPGMGGSQRLTRA---IGKAKAMDLILTGRTMDAAEAERSGLV 197

Query: 212 TH 213
           + 
Sbjct: 198 SR 199

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 96.2 bits (240), Expect = 5e-23
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
            LNRP A NAL+  M A L + F     D ++  V +  SG+AFCAG D+  +     + 
Sbjct: 40  TLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEM---RAEP 96

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             E  +  F      +  +     P +A ++G+    G  +       VA     FA   
Sbjct: 97  SREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSG 156

Query: 168 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
             +G          LS         E + +TG  ++  +    GL
Sbjct: 157 INVGLFCSTPGV-ALSRNVGRKAAFE-MLVTGEFVSADDAKGLGL 199

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 94.9 bits (237), Expect = 8e-23
 Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 18/183 (9%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           VLVE +    +  +NRP A N++N  +   L       + D  +    + G+G +FCAG 
Sbjct: 17  VLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGM 76

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
           D+ +      +G      +        +        KP +A + G  + GG  +++    
Sbjct: 77  DLKA----FARG------ENVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDL 126

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
            VA   + F  PE   G     G       LP  +   +A    LTG  L+     A G+
Sbjct: 127 IVAARDSAFGIPEVKRGLVAGGGGLL---RLPERIPYAIAMELALTGDNLSAERAHALGM 183

Query: 211 ATH 213
              
Sbjct: 184 VNV 186

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 94.6 bits (236), Expect = 1e-22
 Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 12/198 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L+RP   NAL+  +   L     A   +  +  +   G+GR F AG D            
Sbjct: 22  LSRPEKRNALSAELVEALIDGVDAAHRE-QVPLLVFAGAGRNFSAGFDF----TDYETQS 76

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             +       +   +  +       +A+ +G   G G  +     +R    +  F  P  
Sbjct: 77  EGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGL 136

Query: 169 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH-YSVSEKLPLIEE 225
             G       +     +         +  +    +  E    G      + ++   LI+ 
Sbjct: 137 KFGLVL---GTRRFRDIVGADQALS-ILGSARAFDADEARRIGFVRDCAAQAQWPALIDA 192

Query: 226 ELGKLVTDDPSVIEACLE 243
                   DP+       
Sbjct: 193 AAEAATALDPATRATLHR 210

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 96.0 bits (239), Expect = 1e-22
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 18/193 (9%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR---- 89
           +      +        NRP   NA   +   +L ++       P++G V + G+G     
Sbjct: 57  ITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKD 116

Query: 90  ---AFCAGGDI---VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL----KPHVAILNG 139
              AFC+GGD        +    G   +  D  R     I  +   +    K  + ++NG
Sbjct: 117 GGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNG 176

Query: 140 VTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTG 197
              GGG  + +     +A  +   F   +  +G       S YL+   G      +   G
Sbjct: 177 WAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLG 236

Query: 198 AKLNGAEMMACGL 210
                 +M   G 
Sbjct: 237 RTYTAEQMHQMGA 249

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 94.5 bits (236), Expect = 1e-22
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 12/170 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           +NR    N+L+ N+   L+K   A ++D  +  + ++      FCAG D+        + 
Sbjct: 27  INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADL----KERAKM 82

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
              E   F   + + I  +     P +A ++G+ +GGG  +++    RVA         E
Sbjct: 83  SSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVE 142

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
           T +   P  G +  L      +G  LA     +   L+G E  A GL +H
Sbjct: 143 TKLAIIPGGGGTQRLPRA---IGMSLAKELIFSARVLDGKEAKAVGLISH 189

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 95.6 bits (238), Expect = 2e-22
 Identities = 37/193 (19%), Positives = 61/193 (31%), Gaps = 32/193 (16%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG- 107
            NRP   NA+  +   +L+ L +  + DP++  + + G G  FCAG D+ +     +   
Sbjct: 50  FNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAG 109

Query: 108 -------------------------KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 142
                                                      L    KP V  ++G  +
Sbjct: 110 GGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCV 169

Query: 143 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKL 200
            GG  +++     +A        P   +   P AG     +H          L  TG  +
Sbjct: 170 AGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKR-LLFTGDCI 225

Query: 201 NGAEMMACGLATH 213
            GA+    GLA  
Sbjct: 226 TGAQAAEWGLAVE 238

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 93.7 bits (234), Expect = 2e-22
 Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 12/183 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           +LVE      +  +NRP   NAL+TNM ++    +   ++D  I    + G+G A+C GG
Sbjct: 11  LLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGG 70

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
           D+          +                LL   L KP +A +NG  +GGG  +      
Sbjct: 71  DLSD----GWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDI 126

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
           RV+     F  PE   G  P AG+   L      +    A    LTG  L   E    GL
Sbjct: 127 RVSDEHATFGLPEVQRGLVPGAGSMVRLKRQ---IPYTKAMEMILTGEPLTAFEAYHFGL 183

Query: 211 ATH 213
             H
Sbjct: 184 VGH 186

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 93.4 bits (233), Expect = 3e-22
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 13/169 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL   +  +LN+  + +E DP +G + + G  +AF AG DI       N+  
Sbjct: 22  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKE---MQNRTF 78

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
            +     F + +  I  +    KP +A +NG  +GGG  +++      A  K  F  PE 
Sbjct: 79  QDCYSGKFLSHWDHITRIK---KPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEI 135

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
           L+G  P AG +  L+     +G+ LA    LTG +++  +    GL + 
Sbjct: 136 LLGTIPGAGGTQRLTRA---VGKSLAMEMVLTGDRISAQDAKQAGLVSK 181

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 92.6 bits (231), Expect = 6e-22
 Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 18/185 (9%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA 93
           +         + +  L+RP ALNALN  + A++    + ++ D  IG + + GS RAF A
Sbjct: 11  IATSRPVA-GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAA 69

Query: 94  GGDIVSLYHFMNQGKLEECKDF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
           G DI      M      + ++    + +  +  +    KP VA + G  +GGG  +++  
Sbjct: 70  GADIAE----MVTLTPHQARERNLLSGWDSLTQVR---KPIVAAVAGYALGGGCELAMLC 122

Query: 153 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMAC 208
              +A     F  PE  +G  P  G +  L+     +G+  A    LTG  L   E    
Sbjct: 123 DLVIAADTARFGQPEITLGILPGLGGTQRLTRA---VGKAKAMDLCLTGRSLTAEEAERV 179

Query: 209 GLATH 213
           GL + 
Sbjct: 180 GLVSR 184

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 91.9 bits (229), Expect = 1e-21
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP A NA N  +  +L+  +     D ++  + ++ +G+ F AG D+           
Sbjct: 35  LNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRG----GGPVP 90

Query: 109 LEECKDFFRTLYSFIYLLGTHL-----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 163
            +   +F     S  YL  +       KP +A + G  + GG  +  P    +A    +F
Sbjct: 91  DKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALF 150

Query: 164 ATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
           + P  L+            +     LG   A     TG  +   E+   G+   
Sbjct: 151 SDPVVLMDI--GGVEYHGHTWE---LGPRKAKEILFTGRAMTAEEVAQTGMVNR 199

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 91.4 bits (228), Expect = 1e-21
 Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 19/183 (10%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           VL+E +    +  +NRP A NA+N  +   L       ++  ++    + G+G  FCAG 
Sbjct: 9   VLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGM 68

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 154
           D+ +       G+              +        KP +A + G  + GG  + +    
Sbjct: 69  DLKA----FVSGEAVLS-------ERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDL 117

Query: 155 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
            VA     F  PE   G    AG       LP  +   +A    LTG      +    G 
Sbjct: 118 VVAGRSAKFGIPEVKRGLVAGAGGLL---RLPNRIPYQVAMELALTGESFTAEDAAKYGF 174

Query: 211 ATH 213
              
Sbjct: 175 INR 177

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 91.0 bits (227), Expect = 2e-21
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 11/182 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           + V  + +  +A LN   A NA+++ +   + +L    E D NI  V + G GR F AG 
Sbjct: 8   LSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGA 66

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           DI          +  E     +  +  +       KP +A ++G  +GGG   ++    R
Sbjct: 67  DIKEFTSVTEAKQATELAQLGQVTFERVEKCS---KPVIAAIHGAALGGGLEFAMSCHMR 123

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
            A        PE  +G  P    +  L      +G+  A    LT   + GAE +  GL 
Sbjct: 124 FATESAKLGLPELTLGLIPGFAGTQRLPRY---VGKAKACEMMLTSTPITGAEALKWGLV 180

Query: 212 TH 213
             
Sbjct: 181 NG 182

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 91.1 bits (227), Expect = 3e-21
 Identities = 40/178 (22%), Positives = 65/178 (36%), Gaps = 21/178 (11%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL+ +M  +L   +   END  +  + + G+GRAFC+G D+      + +  
Sbjct: 26  LNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKE----IPEDG 81

Query: 109 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
               +  + + Y                 KP +  +NG+  G G          +A  + 
Sbjct: 82  KVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQA 141

Query: 162 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAK--LNGAEMMACGLATH 213
            F  P   IG             +   L   +A    L G    ++       GL + 
Sbjct: 142 TFFDPHVSIGLVAGRELVR----VSRVLPRSIALRMALMGKHERMSAQRAYELGLISE 195

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 90.7 bits (226), Expect = 4e-21
 Identities = 45/169 (26%), Positives = 64/169 (37%), Gaps = 13/169 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NALN  + A L       +    I  V + G G  F AG D+      + +  
Sbjct: 31  LNRPKKRNALNDGLMAALKDCLT--DIPDQIRAVVIHGIGDHFSAGLDLSE----LRERD 84

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             E     +T +     +     P +A L G  +GGG  ++     RVA     +A PE 
Sbjct: 85  ATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEG 144

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
             G     G S  L  L   +G        LTG   + AE +  G + +
Sbjct: 145 SRGIFVGGGGSVRLPRL---IGVARMADMMLTGRVYSAAEGVVHGFSQY 190

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 89.5 bits (223), Expect = 9e-21
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 15/184 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
            L E + N  +  +NRP A NA+N  +   +    +  ++DP +  V + G+G ++FCAG
Sbjct: 11  ALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAG 70

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGT 153
            D+ +    + + +     D     + F   +   + KP +A +NG  +GGG  +++   
Sbjct: 71  ADLKA----IARRENLYHPDHPE--WGFAGYVRHFIDKPTIAAVNGTALGGGTELALASD 124

Query: 154 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACG 209
             VA  +  F  PE   G    AG  F    +   L   +A    LTG  L+ A     G
Sbjct: 125 LVVADERAQFGLPEVKRGLIAAAGGVFR---IAEQLPRKVAMRLLLTGEPLSAAAARDWG 181

Query: 210 LATH 213
           L   
Sbjct: 182 LINE 185

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 7/187 (3%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
                    R  +L+ P   N L+  M   L        +  ++  + +   G  F +G 
Sbjct: 35  TSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGH 94

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+  L     +   +   + F+T    +  +  H  P +A++NG+    G  +       
Sbjct: 95  DLKEL---TEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIA 151

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 213
           VA  K+ FATP   +G          L+         E +  TG  ++  E +  GL + 
Sbjct: 152 VASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALE-MLFTGEPISAQEALLHGLLSK 209

Query: 214 YSVSEKL 220
                +L
Sbjct: 210 VVPEAEL 216

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 88.4 bits (220), Expect = 3e-20
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 11/170 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG 107
           +NRP   NA      A++   F    +D N+  + + G G  AFC+GGD     H    G
Sbjct: 28  INRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG 87

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
           + +  +     L   I ++    KP +A++ G  +GGG  +++     +A    +F    
Sbjct: 88  EDQIPRLNVLDLQRLIRIIP---KPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTG 144

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
             +G       S YL+ +   +G   A        + N  E +  GL   
Sbjct: 145 PKVGSFDAGYGSGYLARI---VGHKKAREIWYLCRQYNAQEALDMGLVNT 191

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 87.2 bits (217), Expect = 6e-20
 Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 12/182 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           V V         +++RP   NA+   +  ++           +IG V + G    F AG 
Sbjct: 26  VSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGD 84

Query: 96  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 155
           D+      +      E     R     I  +    KP VA + G  +G G  +++   +R
Sbjct: 85  DMPE----LRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWR 140

Query: 156 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 211
           V+     F   E L G  P  G    L+ +   +G   A     +G   +  E +A GL 
Sbjct: 141 VSGDNVKFGATEILAGLIPGGGGMGRLTRV---VGSSRAKELVFSGRFFDAEEALALGLI 197

Query: 212 TH 213
             
Sbjct: 198 DD 199

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 85.6 bits (213), Expect = 2e-19
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 19/186 (10%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG--RAFCA 93
           V V       +   N    LNAL+      L +          I  + ++     + F A
Sbjct: 6   VNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP-EIRCIILRAPSGSKVFSA 64

Query: 94  GGDIVSLYHFMNQGKLEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 151
           G DI    H +  G  +     D  R +   I       KP ++++ G   GG   + + 
Sbjct: 65  GHDI----HELPSGGRDPLSYDDPLRQITRMIQKFP---KPIISMVEGSVWGGAFEMIMS 117

Query: 152 GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMA 207
               +A   + F+     +G   +      L+      G  +      T + +     +A
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRD---AGFHIVKELIFTASPITAQRALA 174

Query: 208 CGLATH 213
            G+  H
Sbjct: 175 VGILNH 180

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 17/188 (9%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
           + V  +      IL+ P  +N +   M  +L  +     +D ++  +    +    F A 
Sbjct: 11  LRVSSEHGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAH 69

Query: 95  GDIVSL----YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSI 150
            D+                    + F+ +   I       +  +  L G   GGGA    
Sbjct: 70  VDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQP---QVTIVKLAGKARGGGAEFVA 126

Query: 151 PGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEM 205
                 A          E L+G  P  G + YL      +G   A    LT    +    
Sbjct: 127 AADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGR---VGRNRALEVVLTADLFDAETA 183

Query: 206 MACGLATH 213
            + G    
Sbjct: 184 ASYGWINR 191

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 87.2 bits (216), Expect = 3e-19
 Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 29/203 (14%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-------- 87
           V +E +       + R   LNA +      +         DP +    ++G         
Sbjct: 169 VHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYR 228

Query: 88  -GRAFCAGGDI-------VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-----KPHV 134
             R F AG ++       +SL  F+ + +L       R + +     G        KP V
Sbjct: 229 GKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWV 288

Query: 135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 194
           A ++G  +GGGA + +     +A     F+ P    G  P A        L    G  ++
Sbjct: 289 AAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLR----LGRFAGPRVS 344

Query: 195 ----LTGAKLNGAEMMACGLATH 213
               L G ++   E  A  L   
Sbjct: 345 RQVILEGRRIWAKEPEARLLVDE 367

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 85.2 bits (211), Expect = 6e-19
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 19/219 (8%)

Query: 11  RYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALN----ALNTNMGAKL 66
            +  D  ++S  +           +++ E + +     ++   A+N      +T +   +
Sbjct: 9   HHSQDPNSMSAVQPFIRTNIGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDI 68

Query: 67  NKLFKA-----WENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS 121
                               V +      F  GGD+      + +G      D+ +    
Sbjct: 69  TGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVR 128

Query: 122 FIYLLGTHL---KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA 178
            ++     L      +A++ G  +GGG   ++     +A    +   PE L    P  GA
Sbjct: 129 GVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGA 188

Query: 179 SFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 213
               S +   +   LA    L G   +  +++  GL   
Sbjct: 189 Y---SFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDR 224

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 83.4 bits (207), Expect = 8e-19
 Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 12/165 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LN    +NA++ ++    N      E D  I  V + G       G D+      M    
Sbjct: 21  LNNG-KVNAISPDVIIAFNAALDQAEKDRAI--VIVTGQPGILSGGYDL----KVM-TSS 72

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPE 167
            E   +      +    + +H  P +    G  +  GA + +   +R+   G       E
Sbjct: 73  AEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNE 132

Query: 168 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 210
             IG                         +     +    MA G 
Sbjct: 133 VQIGMTMHHAGIELARDRLRKSAFNR-SVINAEMFDPEGAMAAGF 176

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 83.0 bits (206), Expect = 1e-18
 Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 11/184 (5%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
           VLVE  A + +A+     P  +N+L+     +L    +  END +   V +       F 
Sbjct: 5   VLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 63

Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 152
           AG D+      M          +++ +      L       V+ +NG    GG  V++  
Sbjct: 64  AGLDLT----EMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTC 119

Query: 153 TFRVACGKTVFAT--PETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACG 209
            +R+      +     ET +G          L +  GH   E     G     AE +  G
Sbjct: 120 DYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVG 179

Query: 210 LATH 213
           +   
Sbjct: 180 IVDQ 183

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 37/187 (19%), Positives = 55/187 (29%), Gaps = 17/187 (9%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
           +          A  N P  +N +   +   L  L +   +      V    +    F   
Sbjct: 10  IKARLDGTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPH 68

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYL---LGTHLKPHVAILNGVTMGGGAGVSIP 151
            D+      + +   E  K       S   L   L       +A L G   G G+   + 
Sbjct: 69  VDMT----KVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLA 124

Query: 152 GTFRVA-CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMM 206
              R A     +   PE  IG  P AGA  +L+ L   LG   A    LT +  +     
Sbjct: 125 CDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRL---LGRGRALEAVLTSSDFDADLAE 181

Query: 207 ACGLATH 213
             G    
Sbjct: 182 RYGWVNR 188

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 81.5 bits (202), Expect = 6e-18
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 16/172 (9%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG------RAFCAGGDIVSLYH 102
           +NRP   NA       +L   F     D  IG V + G+G       AFC+GGD      
Sbjct: 25  INRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSV--- 81

Query: 103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTV 162
               G +++       +     L+ +  K  +A++ G  +GGG  + +     +A    +
Sbjct: 82  RGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAI 141

Query: 163 FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 210
           F      +G       S YL+ +   +G+  A        + +  E    G+
Sbjct: 142 FGQTGPKVGSFDGGFGSSYLARI---VGQKKAREIWYLCRQYSAQEAERMGM 190

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFC 92
           +  E K+   +A   +NRP   NA       ++ +       D NIG + + G+G +AFC
Sbjct: 29  IRYE-KSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFC 87

Query: 93  AGGDI--------VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
           +GGD               ++   + + +   RT            KP VA++ G ++GG
Sbjct: 88  SGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCP----------KPVVAMVAGYSIGG 137

Query: 145 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKL 200
           G  + +     +A    +F      +G       + Y++ +   +G+  A        + 
Sbjct: 138 GHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARI---VGQKKAREIWFLCRQY 194

Query: 201 NGAEMMACGLATH 213
           +  + +  GL   
Sbjct: 195 DAKQALDMGLVNT 207

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 80.2 bits (199), Expect = 2e-17
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 14/184 (7%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAG 94
           + V  +       L+   + N+ +     + N        DP+I  V +     + F AG
Sbjct: 11  LTVFKEDGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAG 69

Query: 95  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 154
            DI    +F+          F       +  +    + ++A L G T+GGG  +++    
Sbjct: 70  ADI----NFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDL 125

Query: 155 RVACGKTV-FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACG 209
           R    +      PE  +G     G +  L+ L   +G   A    +TG  +   E +  G
Sbjct: 126 RFMGDEAGKIGLPEVSLGVLAGTGGTQRLARL---IGYSRALDMNITGETITPQEALEIG 182

Query: 210 LATH 213
           L   
Sbjct: 183 LVNR 186

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 74.6 bits (183), Expect = 8e-15
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 11/215 (5%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWEND-PNIGFVSMKGSG-RAFCAGGDIVSLYHFMN 105
                  LN+ +  +  +L+   +    + P +  V +     R FC+G +I  L    +
Sbjct: 45  RDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTH 104

Query: 106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC--GKTVF 163
             K+  CK    T               +A +NG   GGG  +++            +  
Sbjct: 105 AWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSV 164

Query: 164 ATPE-TLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATH-YSVS 217
           + PE  L+G  P  G    ++            F       + G    A  L       +
Sbjct: 165 SLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFC-TVVEGVRGERAKAWRLVDEVVKPN 223

Query: 218 EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD 252
           +    I+    +L         A     + +   D
Sbjct: 224 QFDQAIQARALELAAQSDRPAHAQGVPLTRIERTD 258

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L  P   N+L+ ++   L   ++   +  ++  + + G+   F  G DI      M +G 
Sbjct: 23  LINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGE-MQKGN 80

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
           ++E K  + ++     LL    KP VA ++G+ +GGG  +++    R++        PE 
Sbjct: 81  VKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPEL 140

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLAL----TGAKLNGAEMMACGL 210
            +G  P  G +  L  L   +G   AL    T   +   E  + GL
Sbjct: 141 QLGVIPGFGGTQRLPRL---VGLTKALEMILTSKPVKAEEGHSLGL 183

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 26/206 (12%)

Query: 9   ISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNK 68
              + +    L    +  +    L + + +          L  P   NA++  +  ++  
Sbjct: 4   SHHHHHHSSGLVPRGSHMAEYLRLPHSLAM--------IRLCNPPV-NAVSPTVIREVRN 54

Query: 69  LFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGT 128
             +   +D  +  + + G+   FCAG DI     F                      +  
Sbjct: 55  GLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG---LALGSLVDE-------IQR 104

Query: 129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 188
           + KP +A + GV +GGG  +++   +R+A  K     PE  +G  P A  +  L  +   
Sbjct: 105 YQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRV--- 161

Query: 189 LGEFLAL----TGAKLNGAEMMACGL 210
           +G  +AL    +G  L+  E +  G+
Sbjct: 162 VGVPVALDLITSGKYLSADEALRLGI 187

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 8/159 (5%)

Query: 56  NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 115
           N  N     +L +   A + D ++  V +      F  G DI            E     
Sbjct: 30  NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAEL-IAG 88

Query: 116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD 175
                           P VA +NG+ +GGG  + +   FRV         PE  +G +P 
Sbjct: 89  NLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPG 148

Query: 176 AGASFYLSHLPGHLGEFLAL----TGAKLNGAEMMACGL 210
            G +  L  L   +G   A+    +G +    + +    
Sbjct: 149 FGGTVRLPRL---IGVDNAVEWIASGKENRAEDALKVSA 184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 6e-11
 Identities = 69/397 (17%), Positives = 107/397 (26%), Gaps = 122/397 (30%)

Query: 1   MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNT 60
           M  +K             + Q        D L N   V  K N     ++R      L  
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQR-------DRLYNDNQVFAKYN-----VSRLQPYLKLRQ 142

Query: 61  NMGAKLNKLFKAWENDPNIGFVSMKGSGR-----AFCAGGDIVSLYHF----MNQGKLEE 111
                L +L        N+    + GSG+       C    +     F    +N      
Sbjct: 143 ----ALLEL----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 112 CKDFFRTLYSFIYLLGTHL---------------------------KPHVA---ILNGVT 141
            +     L   +Y +  +                            KP+     +L  V 
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV- 253

Query: 142 MGGGAGVSIPGTFRVACGKTVFAT-------------------PETLIGFHPDAGASF-- 180
                       F ++C K +  T                       +   PD   S   
Sbjct: 254 ----QNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 181 -YLSHLPGHLGEFLALTGAKLNG---AEMMACGLAT-----HYSVSEKLPLIEEELGKLV 231
            YL   P  L     LT         AE +  GLAT     H +  +   +IE  L  L 
Sbjct: 309 KYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL- 366

Query: 232 TDDPSVIEACLEKYSDL-VYPDKNSVIHRIDIVDKCFGL-------DTVEEIIDSLESEA 283
             +P+        +  L V+P   S      I      L         V  +++ L    
Sbjct: 367 --EPAEYRKM---FDRLSVFPP--SA----HIPTILLSLIWFDVIKSDVMVVVNKLHK-Y 414

Query: 284 SLINDPWCGSTLRL----LKEASPLSLKVSL-RSIRE 315
           SL+      ST+ +    L+    L  + +L RSI +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 5e-09
 Identities = 50/393 (12%), Positives = 117/393 (29%), Gaps = 108/393 (27%)

Query: 24  TSSSVTDDLCNQVLVEGKANSRM-----AILNRPSALNALNTNMGAKLNK----LFKAWE 74
             S ++ +  + +++   A S        +L++      +   +   L      L    +
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIK 99

Query: 75  ---NDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 131
                P++                 + + Y+        + +   + L          L+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLE--------LR 148

Query: 132 PHVAI-LNGVTMGGGAGVSIPGTFRVACGKTVFATPETL----IGFHPDAGASFYLS--- 183
           P   + ++G  + G              GKT  A  +      +    D    F+L+   
Sbjct: 149 PAKNVLIDG--VLG-------------SGKTWVAL-DVCLSYKVQCKMDFKI-FWLNLKN 191

Query: 184 -HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPL--IEEELGK----------- 229
            + P  + E L     +++         + H S + KL +  I+ EL +           
Sbjct: 192 CNSPETVLEMLQKLLYQIDP---NWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 230 LVTDD---PSVIEA----CLEKYSDLVYPDKNSVIHR-IDIVDKCFGLDT----VEEIID 277
           LV  +        A    C           K  +  R   + D      T    ++    
Sbjct: 248 LVLLNVQNAKAWNAFNLSC-----------KILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 278 SL---ESEASLINDPWCGSTLRLL-KEA---SPLSLKVSLRSIREG--RFQTFDECLVRE 328
           +L   E ++ L+   +     + L +E    +P  L +   SIR+G   +  +      +
Sbjct: 297 TLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 329 YRMSLQ-GVSRLISGDF---YEVSNFQILNKHV 357
               ++  ++ L   ++   ++     +     
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFD--RLSVFPPSA 385

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.85
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.83
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.81
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.61
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.6
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.56
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.53
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.05
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.73
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.69
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.68
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.59
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.54
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.49
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	98.19
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	98.07
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	98.0
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.94
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.75
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.65
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.58
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.5
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.45
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.29
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.14
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.1
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.85
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.84
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.5
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.47
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	96.41
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	96.35
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.26
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	94.68
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	92.27
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	91.56
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	90.3
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	90.08
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	87.54
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	87.36
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	85.27
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	84.55
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	83.72
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	83.15
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	81.86
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	80.52

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.3e-62  Score=469.97  Aligned_cols=311  Identities=33%  Similarity=0.578  Sum_probs=271.0

Q ss_pred             ccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCC
Q 018384           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK  108 (357)
Q Consensus        30 ~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~  108 (357)
                      ....+.|.++++|+|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... .+
T Consensus         5 t~~~e~vl~e~~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~-~~   83 (353)
T 4hdt_A            5 TAKNEDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAK-AD   83 (353)
T ss_dssp             ---CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHH-TT
T ss_pred             cCCCCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccc-hh
Confidence            34567899999999999999999999999999999999999999999999999999999 79999999999875432 23


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      ......++...+.++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g~  163 (353)
T 4hdt_A           84 GAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGK  163 (353)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSSTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhhH
Confidence            44556677778889999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             HHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          189 LGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       189 ~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                      .+++|++||++|+|+||+++||||+|||++++++.+++++..      .+......+..  ......+......|+++|+
T Consensus       164 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~------~~~~~l~~~~~--~~~~~~l~~~~~~i~~~f~  235 (353)
T 4hdt_A          164 LGLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIAD------GVDAALAAHAQ--EPPASPLAEQRSWIDECYT  235 (353)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHH------CHHHHHHHHCB--CCCCCHHHHTHHHHHHHTT
T ss_pred             HHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHh------chhHHHHHhcc--cCCccchHHHHHHHHHHhC
Confidence            599999999999999999999999999999998877766321      12222233322  2333456667889999999


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~-~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                      .+++++|++.|+..    ..+|+.++++.|+++||.|++.+|++++++... +++++++.|.+++..++.   ++||+||
T Consensus       236 ~~~~~~i~~~L~~~----~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~---s~D~~EG  308 (353)
T 4hdt_A          236 GDTVADIIAALRAH----DAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLK---SHDLVEG  308 (353)
T ss_dssp             CSSHHHHHHHHHHH----CSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             CCCHHHHHHHHHhc----ccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhC---CchHHHH
Confidence            99999999999975    568999999999999999999999999998775 899999999999999997   9999999


Q ss_pred             hhhee--ccCC
Q 018384          348 SNFQI--LNKH  356 (357)
Q Consensus       348 i~afl--~~r~  356 (357)
                      ++|||  +||+
T Consensus       309 vrAfl~dekR~  319 (353)
T 4hdt_A          309 IRAQLVDKDRN  319 (353)
T ss_dssp             HHHHHC----C
T ss_pred             HhhhhhCcCCC
Confidence            99999  6664

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=1.3e-60  Score=458.44  Aligned_cols=315  Identities=38%  Similarity=0.641  Sum_probs=278.1

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      .++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.| ++||+|+|++++........ .
T Consensus         4 ~~~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~-~   82 (363)
T 3bpt_A            4 AAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQ-K   82 (363)
T ss_dssp             CCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSC-C
T ss_pred             CCcceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhccccc-H
Confidence            345688999999999999999999999999999999999999999999999999998 99999999998765321111 1


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHH
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG  190 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a  190 (357)
                      ....++...+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a  162 (363)
T 3bpt_A           83 IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLG  162 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHHHH
Confidence            12234444567788999999999999999999999999999999999999999999999999999999999999999779


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCC---CChhhHHHHHHHHHHHc
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVY---PDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  267 (357)
                      ++|++||++|+|+||+++|||++|+|++++.+..+.++++...++..+...++.+.....   +....+......|++||
T Consensus       163 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f  242 (363)
T 3bpt_A          163 YFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCF  242 (363)
T ss_dssp             HHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHT
T ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHh
Confidence            999999999999999999999999999998876777777777789999999988875332   11233445578999999


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                      +.++.+++++.+++.    ..+|+.+++++|+++||.|++.+|++++++...+++++++.|...+...+.   ++|++||
T Consensus       243 ~~~~~~ei~~al~~~----~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~---s~D~~EG  315 (363)
T 3bpt_A          243 SANTVEEIIENLQQD----GSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMR---GHDFHEG  315 (363)
T ss_dssp             TSSSHHHHHHHHHHH----CCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SSHHHHH
T ss_pred             CCCCHHHHHHHHhcc----ChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---CccHHhh
Confidence            999999999999875    468999999999999999999999999999989999999999999999887   9999999


Q ss_pred             hhhee-cc
Q 018384          348 SNFQI-LN  354 (357)
Q Consensus       348 i~afl-~~  354 (357)
                      ++||+ +|
T Consensus       316 v~Afl~eK  323 (363)
T 3bpt_A          316 VRAVLIDK  323 (363)
T ss_dssp             HHHHTTSC
T ss_pred             hhheeeCC
Confidence            99999 45

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=7.4e-61  Score=464.99  Aligned_cols=319  Identities=28%  Similarity=0.505  Sum_probs=274.5

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccC--
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQG--  107 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~--  107 (357)
                      .+++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.| ++||+|+|++++.......  
T Consensus        39 v~~~~v~~~~~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~  118 (407)
T 3ju1_A           39 VVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKG  118 (407)
T ss_dssp             EEEEEEECTTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTS
T ss_pred             cccceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccc
Confidence            4566788889999999999999999999999999999999999999999999999999 8999999999986542111  


Q ss_pred             -ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcC
Q 018384          108 -KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (357)
Q Consensus       108 -~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (357)
                       .......++...+.++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus       119 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~  198 (407)
T 3ju1_A          119 QVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMP  198 (407)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhh
Confidence             2334556667777899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCC-H----HHHHHHHHHhhccC--CCChhhHHHH
Q 018384          187 GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDD-P----SVIEACLEKYSDLV--YPDKNSVIHR  259 (357)
Q Consensus       187 g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~-~----~~~~~~~~~~~~~~--~~~~~~~~~~  259 (357)
                      |..+++|++||++|+|+||+++|||++|||++++.+..+.|.++.... +    ..+....+.+....  ......+...
T Consensus       199 g~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~  278 (407)
T 3ju1_A          199 GKMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAES  278 (407)
T ss_dssp             TTHHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHT
T ss_pred             HHHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHH
Confidence            933999999999999999999999999999999987777765543322 1    11333333332221  2334456677


Q ss_pred             HHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcC
Q 018384          260 IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRL  339 (357)
Q Consensus       260 ~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~  339 (357)
                      ...|++||+ +++++|++.|++...  .++|+++++++|+++||.|++.+|++++++...+++++++.|.+.+...+.  
T Consensus       279 ~~~I~~~f~-~sv~~i~~~L~~~~~--~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~--  353 (407)
T 3ju1_A          279 QEMIDRLMA-GSLTDIVTRMSTLST--DEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCA--  353 (407)
T ss_dssp             HHHHHHHTC-SCHHHHHHHHHHCCC--SCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhc-CCHHHHHHHHHhccc--ccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC--
Confidence            889999999 999999999987432  469999999999999999999999999999999999999999999999998  


Q ss_pred             CCCChhhhhhheeccC
Q 018384          340 ISGDFYEVSNFQILNK  355 (357)
Q Consensus       340 ~s~d~~egi~afl~~r  355 (357)
                       ++||+||++||+++|
T Consensus       354 -s~D~~EGvrAflidK  368 (407)
T 3ju1_A          354 -KGDFCEGVRALLIDK  368 (407)
T ss_dssp             -HSSHHHHHHHHTTSC
T ss_pred             -CHHHHHHHHHHHhcC
Confidence             999999999999544

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=7.5e-61  Score=443.64  Aligned_cols=258  Identities=24%  Similarity=0.318  Sum_probs=227.2

Q ss_pred             cccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCC
Q 018384           29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK  108 (357)
Q Consensus        29 ~~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~  108 (357)
                      ...|++.|.++++|+|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++........
T Consensus        10 ~GsM~e~il~~~~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~   89 (274)
T 4fzw_C           10 HGSMMEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPA   89 (274)
T ss_dssp             ------CEEEEEETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------C
T ss_pred             cccccccEEEEEECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccc
Confidence            34688899999999999999999999999999999999999999999999999999999999999999998754332223


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      .+....+.+.++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus        90 ~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  169 (274)
T 4fzw_C           90 PDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGR  169 (274)
T ss_dssp             CCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhH
Confidence            33344555566778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . |++|++||++|+|+||+++|||++|||++++.+.+..                                         
T Consensus       170 ~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~-----------------------------------------  208 (274)
T 4fzw_C          170 ARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQ-----------------------------------------  208 (274)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHH-----------------------------------------
Confidence            9 9999999999999999999999999999888754443                                         


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                                ++++|+.+||.+++.+|++++.....+++++++.|...+...+.   |+|++||
T Consensus       209 --------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~Eg  259 (274)
T 4fzw_C          209 --------------------------LARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAGR---SADYREG  259 (274)
T ss_dssp             --------------------------HHHHHTTSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT---SHHHHHH
T ss_pred             --------------------------HHHHHHcCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                      48999999999999999999999999999999999999988887   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      ++||++||+
T Consensus       260 v~AF~eKR~  268 (274)
T 4fzw_C          260 VSAFLAKRS  268 (274)
T ss_dssp             HHHHHC-CC
T ss_pred             HHHHhCCCC
Confidence            999999986

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=2e-60  Score=436.82  Aligned_cols=246  Identities=26%  Similarity=0.316  Sum_probs=229.0

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      |.++++|+|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.|++||+|.|++++...     ......+
T Consensus         2 vl~E~~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-----~~~~~~~   76 (254)
T 3hrx_A            2 VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDR-----KPDYEAH   76 (254)
T ss_dssp             EEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTS-----CCCHHHH
T ss_pred             eEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhccc-----chhhHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999987542     1223345


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHH
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (357)
                      ...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. |++|+
T Consensus        77 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll  156 (254)
T 3hrx_A           77 LRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL  156 (254)
T ss_dssp             THHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHh
Confidence            56677889999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  274 (357)
                      +||++|+|+||+++||||+|||++++.+.+..                                                
T Consensus       157 ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~------------------------------------------------  188 (254)
T 3hrx_A          157 LLSPRLSAEEALALGLVHRVVPAEKLMEEALS------------------------------------------------  188 (254)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEECGGGHHHHHHH------------------------------------------------
T ss_pred             hcCcccCHHHHHHCCCeEEecCcHHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999988754443                                                


Q ss_pred             HHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018384          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  354 (357)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~  354 (357)
                                         ++++|+.+||.+++.+|++++.....+++++++.|...+...+.   |+|++||++||++|
T Consensus       189 -------------------~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~Eg~~AF~eK  246 (254)
T 3hrx_A          189 -------------------LAKELAQGPTRAYALTKKLLLETYRLSLTEALALEAVLQGQAGQ---TQDHEEGVRAFREK  246 (254)
T ss_dssp             -------------------HHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHHHTT
T ss_pred             -------------------HHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhCC
Confidence                               48999999999999999999999999999999999999999987   99999999999999


Q ss_pred             CC
Q 018384          355 KH  356 (357)
Q Consensus       355 r~  356 (357)
                      |+
T Consensus       247 R~  248 (254)
T 3hrx_A          247 RP  248 (254)
T ss_dssp             SC
T ss_pred             CC
Confidence            96

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=7.5e-60  Score=433.43  Aligned_cols=246  Identities=22%  Similarity=0.289  Sum_probs=227.4

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHH
Q 018384           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (357)
Q Consensus        35 ~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (357)
                      .+.++++|+|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...      .....
T Consensus         6 ~l~ve~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~------~~~~~   79 (258)
T 4fzw_A            6 ELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEK------DLAAT   79 (258)
T ss_dssp             EEEEEEETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTC------CHHHH
T ss_pred             cEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccc------hhhhH
Confidence            488999999999999999999999999999999999999999999999999999999999999987531      11222


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHH
Q 018384          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (357)
Q Consensus       115 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (357)
                      +......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++|
T Consensus        80 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l  159 (258)
T 4fzw_A           80 LNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKM  159 (258)
T ss_dssp             HTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             HHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHH
Confidence            333456788899999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHH
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  273 (357)
                      ++||++|+|+||+++|||++|+|++++.+.+..                                               
T Consensus       160 lltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~-----------------------------------------------  192 (258)
T 4fzw_A          160 VLSGESITAQQAQQAGLVSDVFPSDLTLEYALQ-----------------------------------------------  192 (258)
T ss_dssp             HHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHH-----------------------------------------------
T ss_pred             HHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999998754443                                               


Q ss_pred             HHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 018384          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL  353 (357)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~  353 (357)
                                          ++++|+++||.+++.+|+++++....+++++++.|.+.+...+.   |+|++||++||++
T Consensus       193 --------------------~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~Eg~~AF~e  249 (258)
T 4fzw_A          193 --------------------LASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAA---TEDRHEGISAFLQ  249 (258)
T ss_dssp             --------------------HHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHHHT
T ss_pred             --------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhC
Confidence                                48999999999999999999999999999999999999999987   9999999999999


Q ss_pred             cCC
Q 018384          354 NKH  356 (357)
Q Consensus       354 ~r~  356 (357)
                      ||+
T Consensus       250 KR~  252 (258)
T 4fzw_A          250 KRT  252 (258)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            986

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=9.3e-58  Score=424.41  Aligned_cols=256  Identities=21%  Similarity=0.253  Sum_probs=235.7

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      +.++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++..........
T Consensus        14 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   93 (279)
T 3g64_A           14 PEWRHLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTA   93 (279)
T ss_dssp             SCCSSEEEEEETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhh
Confidence            45778999999999999999999999999999999999999999999999999999999999999999887654333333


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEeccccccccc-CCCcHHHHHhhcChHH
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH-PDAGASFYLSHLPGHL  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~-p~~g~~~~l~r~~g~~  189 (357)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++|++++|++++|..
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~  173 (279)
T 3g64_A           94 RLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG  173 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence            344556667788999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       190 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                       +++|++||++|+|+||+++||||+|+|++++.+.+..                                          
T Consensus       174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~------------------------------------------  211 (279)
T 3g64_A          174 HATRLLMLGDTVRAPEAERIGLISELTEEGRADEAART------------------------------------------  211 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHH------------------------------------------
T ss_pred             HHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHH------------------------------------------
Confidence             9999999999999999999999999999998764443                                          


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  348 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi  348 (357)
                                               ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+
T Consensus       212 -------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg~  263 (279)
T 3g64_A          212 -------------------------LARRLADGPALAHAQTKALLTAELDMPLAAAVELDASTQALLMT---GEDYAEFH  263 (279)
T ss_dssp             -------------------------HHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT---SHHHHHHH
T ss_pred             -------------------------HHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHH
Confidence                                     48999999999999999999999989999999999999999887   99999999


Q ss_pred             hheeccCC
Q 018384          349 NFQILNKH  356 (357)
Q Consensus       349 ~afl~~r~  356 (357)
                      +||++||+
T Consensus       264 ~af~ekr~  271 (279)
T 3g64_A          264 AAFTEKRP  271 (279)
T ss_dssp             HHHHTTSC
T ss_pred             HHHhcCCC
Confidence            99999986

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=9.7e-58  Score=420.23  Aligned_cols=252  Identities=21%  Similarity=0.274  Sum_probs=230.6

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      +|++.+.++++++|++||||||++ |+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...   ....
T Consensus         3 ~m~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~   78 (261)
T 3pea_A            3 AMLKFLSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSV---TEAK   78 (261)
T ss_dssp             -CCSSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTT---CCHH
T ss_pred             ccccceEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhc---Cchh
Confidence            567889999999999999999998 999999999999999999999999999999999999999999987542   1222


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      ....+....+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  158 (261)
T 3pea_A           79 QATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAK  158 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence            3334445556788899999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|++||++++|+||+++||||+|+|++++.+.+..                                           
T Consensus       159 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~-------------------------------------------  195 (261)
T 3pea_A          159 ACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLK-------------------------------------------  195 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHH-------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999999888654443                                           


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                              ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||++
T Consensus       196 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  248 (261)
T 3pea_A          196 ------------------------VAKQIAGKSPATARAVLELLQTTKSSHYYEGVQREAQIFGEVFT---SEDGREGVA  248 (261)
T ss_dssp             ------------------------HHHHHHTSCHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---SHHHHHHHH
T ss_pred             ------------------------HHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                    38899999999999999999998888899999999999999998   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      +|++||+
T Consensus       249 af~ekr~  255 (261)
T 3pea_A          249 AFLEKRK  255 (261)
T ss_dssp             HHHTTSC
T ss_pred             HHHcCCC
Confidence            9999986

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=7.1e-58  Score=423.49  Aligned_cols=248  Identities=22%  Similarity=0.185  Sum_probs=228.5

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++++  |+++++|||||.|++||+|+|++++..    ......
T Consensus        15 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~~~~~   88 (275)
T 3hin_A           15 PSTLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRE----RDATEG   88 (275)
T ss_dssp             GGGEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCC----CCHHHH
T ss_pred             CCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhc----cChhhH
Confidence            46799999999999999999999999999999999999998  678999999999999999999998753    223333


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. |+
T Consensus        89 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  168 (275)
T 3hin_A           89 LVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMA  168 (275)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHH
Confidence            44556677888999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|++||++|+|+||+++||||+|||++++.+.+.                                              
T Consensus       169 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  202 (275)
T 3hin_A          169 DMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKAL----------------------------------------------  202 (275)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999999875444                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                           +++++|+++||.+++.+|+++++....+++++++.|...+...+.   ++|++||+++|
T Consensus       203 ---------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~AF  258 (275)
T 3hin_A          203 ---------------------ELGNRVAQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVAQS---DQEAKTRIRAF  258 (275)
T ss_dssp             ---------------------HHHHHHTTSCHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHH---SHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 348999999999999999999999999999999999999988887   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      ++||+
T Consensus       259 ~ekR~  263 (275)
T 3hin_A          259 LDHKT  263 (275)
T ss_dssp             HHHHH
T ss_pred             HcCCC
Confidence            99984

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=3e-57  Score=417.86  Aligned_cols=250  Identities=21%  Similarity=0.307  Sum_probs=232.6

Q ss_pred             CCceEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChH
Q 018384           33 CNQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        33 ~~~i~~~-~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      ++.|.++ .+++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++...    ...
T Consensus         7 ~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~   82 (265)
T 3kqf_A            7 LQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGM----NEE   82 (265)
T ss_dssp             CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTC----CHH
T ss_pred             CCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhcc----CHH
Confidence            4679999 8999999999999999999999999999999999999999999999999 999999999987542    334


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      ....+....+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  162 (265)
T 3kqf_A           83 QVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR  162 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence            4556667778899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|++||++++|+||+++||||+|+|++++.+.+..                                           
T Consensus       163 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~-------------------------------------------  199 (265)
T 3kqf_A          163 AKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIE-------------------------------------------  199 (265)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHH-------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999998888654443                                           


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                              ++++|+.+||.+++.+|++++.....+++++++.|...+...+.   ++|++||++
T Consensus       200 ------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  252 (265)
T 3kqf_A          200 ------------------------IAEKIASNGPIAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIH---TKDRLEGLQ  252 (265)
T ss_dssp             ------------------------HHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---CHHHHHHHH
T ss_pred             ------------------------HHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                    48899999999999999999999999999999999999999987   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      +|++||+
T Consensus       253 af~ekr~  259 (265)
T 3kqf_A          253 AFKEKRT  259 (265)
T ss_dssp             HHHTTSC
T ss_pred             HHHcCCC
Confidence            9999986

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=4.9e-57  Score=416.80  Aligned_cols=252  Identities=19%  Similarity=0.251  Sum_probs=229.2

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... ......
T Consensus         3 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~   81 (268)
T 3i47_A            3 LSDLLYEIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMAN-FTEEEN   81 (268)
T ss_dssp             CCSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHT-CCHHHH
T ss_pred             CCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhcccc-ccHHHH
Confidence            4679999999999999999999999999999999999999999999999999999999999999999865321 223333


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|.. |+
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~  160 (268)
T 3i47_A           82 LEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAAK  160 (268)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHHH
Confidence            3445567788999999999999999999999999999999999999999999999999999999888 789999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|++||++|+|+||+++|||++|+|++++.+.+..                                             
T Consensus       161 ~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~---------------------------------------------  195 (268)
T 3i47_A          161 MLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLK---------------------------------------------  195 (268)
T ss_dssp             HHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHH---------------------------------------------
T ss_pred             HHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888754443                                             


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHH-HHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDE-CLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~-~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            ++++|+++||.+++.+|++++.....++++ .++.|...+...+.   ++|++||++|
T Consensus       196 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~---s~d~~eg~~A  250 (268)
T 3i47_A          196 ----------------------YASQISNNAPEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRV---SDEGQEGLKA  250 (268)
T ss_dssp             ----------------------HHHHHHTSCHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH---SHHHHHHHHH
T ss_pred             ----------------------HHHHHHcCCHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                                  489999999999999999999998888888 78999999988888   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |++||+
T Consensus       251 F~ekR~  256 (268)
T 3i47_A          251 FLNKEI  256 (268)
T ss_dssp             HHHTCC
T ss_pred             HHcCCC
Confidence            999986

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=6.4e-57  Score=420.55  Aligned_cols=257  Identities=20%  Similarity=0.267  Sum_probs=226.8

Q ss_pred             ccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCC-
Q 018384           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK-  108 (357)
Q Consensus        30 ~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~-  108 (357)
                      +.|+..+.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++........ 
T Consensus        20 ~~m~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~   99 (290)
T 3sll_A           20 GSMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGL   99 (290)
T ss_dssp             ---CCEEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTC
T ss_pred             CCCCeEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccc
Confidence            3466789999999999999999999999999999999999999999999999999999999999999998754321111 


Q ss_pred             --hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCC-CcHHHHHhhc
Q 018384          109 --LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD-AGASFYLSHL  185 (357)
Q Consensus       109 --~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~-~g~~~~l~r~  185 (357)
                        ......+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +|++++|+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~  179 (290)
T 3sll_A          100 TQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRA  179 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHH
Confidence              1224456667788999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             ChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHH
Q 018384          186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (357)
Q Consensus       186 ~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (357)
                      +|.. +++|++||++|+|+||+++||||+|+|++++.+.+.                                       
T Consensus       180 vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~---------------------------------------  220 (290)
T 3sll_A          180 IGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECY---------------------------------------  220 (290)
T ss_dssp             HCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHH---------------------------------------
T ss_pred             hCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHH---------------------------------------
Confidence            9998 999999999999999999999999999988865443                                       


Q ss_pred             HHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHhh-hcCCCC
Q 018384          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGV-SRLISG  342 (357)
Q Consensus       265 ~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~-~~l~~~l~~e~~~~~~~~-~~~~s~  342 (357)
                                                  +++++|+..||.+++.+|++++.... .+++++++.|...+...+ .   ++
T Consensus       221 ----------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~---s~  269 (290)
T 3sll_A          221 ----------------------------AIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLL---TD  269 (290)
T ss_dssp             ----------------------------HHHHHHHHSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH---CC
T ss_pred             ----------------------------HHHHHHHcCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhc---CH
Confidence                                        34899999999999999999999988 899999999999999888 8   99


Q ss_pred             ChhhhhhheeccCC
Q 018384          343 DFYEVSNFQILNKH  356 (357)
Q Consensus       343 d~~egi~afl~~r~  356 (357)
                      |++||++||++||+
T Consensus       270 d~~eg~~AFlekR~  283 (290)
T 3sll_A          270 NFEEATAARKEKRP  283 (290)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHcCCC
Confidence            99999999999986

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1.1e-57  Score=418.94  Aligned_cols=253  Identities=20%  Similarity=0.252  Sum_probs=190.3

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      ..+..|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++......... 
T Consensus         3 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-   81 (256)
T 3qmj_A            3 GSMVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNF-   81 (256)
T ss_dssp             ---CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSC-
T ss_pred             CCcceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhH-
Confidence            3456799999999999999999999999999999999999999999999999999999999999999998654322110 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                        ..+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        82 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  159 (256)
T 3qmj_A           82 --SEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQN  159 (256)
T ss_dssp             --CCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHH
Confidence              11123346678889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|++||++++|+||+++||||+|+|++++.+.+..                                           
T Consensus       160 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~-------------------------------------------  196 (256)
T 3qmj_A          160 AAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARR-------------------------------------------  196 (256)
T ss_dssp             HHHHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHH-------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999999888754443                                           


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                              ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||++
T Consensus       197 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  249 (256)
T 3qmj_A          197 ------------------------HAEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAELMG---AQANAAALA  249 (256)
T ss_dssp             ------------------------HHHHHHTSCHHHHHHHHHHHHCC---------------------------------
T ss_pred             ------------------------HHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                    38999999999999999999999888999999999999988887   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      +|++||+
T Consensus       250 af~ekr~  256 (256)
T 3qmj_A          250 DFTDRRR  256 (256)
T ss_dssp             -------
T ss_pred             HHHccCC
Confidence            9999985

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=7.9e-57  Score=412.78  Aligned_cols=245  Identities=24%  Similarity=0.333  Sum_probs=226.2

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      .++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|.|++++..      .  
T Consensus         4 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~------~--   75 (255)
T 3p5m_A            4 SMNGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDT------A--   75 (255)
T ss_dssp             CBTTEEEEEETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CH------H--
T ss_pred             CCceEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcc------h--
Confidence            34569999999999999999999999999999999999999999999999999999999999999998742      1  


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                        .+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        76 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  153 (255)
T 3p5m_A           76 --GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRART  153 (255)
T ss_dssp             --HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence              3455567788999999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||++++|+||+++||||+|+|++++.+.+..                                            
T Consensus       154 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------  189 (255)
T 3p5m_A          154 SRMAMTAEKISAATAFEWGMISHITSADEYESVLTD--------------------------------------------  189 (255)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHH--------------------------------------------
T ss_pred             HHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999998765443                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                             ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++
T Consensus       190 -----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~a  243 (255)
T 3p5m_A          190 -----------------------VLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALVE---TADFREGARA  243 (255)
T ss_dssp             -----------------------HHHHHHTSCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTT---SHHHHHHHHH
T ss_pred             -----------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                   38899999999999999999999889999999999999999987   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |++||+
T Consensus       244 f~ekr~  249 (255)
T 3p5m_A          244 FRERRT  249 (255)
T ss_dssp             HHTTSC
T ss_pred             HHcCCC
Confidence            999986

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=1.2e-56  Score=415.74  Aligned_cols=252  Identities=20%  Similarity=0.272  Sum_probs=230.8

Q ss_pred             ccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCCh
Q 018384           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        30 ~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      ..+++.+.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....  .+.
T Consensus        24 ~~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~  101 (276)
T 3rrv_A           24 YDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELS--ADA  101 (276)
T ss_dssp             CCCCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHH--HCH
T ss_pred             CCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcc--cch
Confidence            345678999999999999999999999999999999999999999999999999999999999999999886532  123


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH
Q 018384          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (357)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (357)
                      .....+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  181 (276)
T 3rrv_A          102 DLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLL  181 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHH
Confidence            34445666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       190 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                       +++|++||++|+|+||+++||||+|+  +++.+.+.                                           
T Consensus       182 ~A~ellltG~~i~A~eA~~~GLv~~vv--~~l~~~a~-------------------------------------------  216 (276)
T 3rrv_A          182 LAKEYALTGTRISAQRAVELGLANHVA--DDPVAEAI-------------------------------------------  216 (276)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHH-------------------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHH-------------------------------------------
Confidence             99999999999999999999999999  67765443                                           


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  348 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi  348 (357)
                                              +++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+
T Consensus       217 ------------------------~~A~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~  269 (276)
T 3rrv_A          217 ------------------------ACAKKILELPQQAVESTKRVLNIHLERAVLASLDYALSAESQSFV---TEDFRSIV  269 (276)
T ss_dssp             ------------------------HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SHHHHHHH
T ss_pred             ------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhC---CHHHHHHH
Confidence                                    348999999999999999999998888899999999999988887   99999999


Q ss_pred             hheeccC
Q 018384          349 NFQILNK  355 (357)
Q Consensus       349 ~afl~~r  355 (357)
                      +||++||
T Consensus       270 ~AF~ekR  276 (276)
T 3rrv_A          270 TKLADKN  276 (276)
T ss_dssp             HHHHCCC
T ss_pred             HHHHcCC
Confidence            9999987

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=7.9e-57  Score=414.61  Aligned_cols=254  Identities=19%  Similarity=0.259  Sum_probs=228.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCcc-ccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAF-CAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F-~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|+.| |+|+|++++...........
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~   82 (263)
T 3lke_A            3 LSYVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVR   82 (263)
T ss_dssp             CCSEEEEECSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHH
T ss_pred             CcEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHH
Confidence            46799999999999999999989999999999999999999999999999999999999 99999999865211123444


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A  162 (263)
T 3lke_A           83 LREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQT  162 (263)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHH
Confidence            556677778899999999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecC-CCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSV-SEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      ++|++||++++|+||+++|||++|+| ++++.+.+.                                            
T Consensus       163 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~--------------------------------------------  198 (263)
T 3lke_A          163 MNLLLEGKLFTSEEALRLGLIQEICENKQELQERVK--------------------------------------------  198 (263)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHH--------------------------------------------
Confidence            99999999999999999999999999 777765443                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                             +++++|++.||.+++.+|++++.....+++++++.|...+...+.   ++|++||++
T Consensus       199 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~e~~~  252 (263)
T 3lke_A          199 -----------------------NYLKAVSEGYVPAIAATKKLLKGKAAEELKQQLEQETEELVALFK---QTEIKKRLE  252 (263)
T ss_dssp             -----------------------HHHHHHHTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT---SHHHHHHHH
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                   348999999999999999999999888899999999999999887   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      +|+++++
T Consensus       253 ~~~~~~~  259 (263)
T 3lke_A          253 ALVEGHH  259 (263)
T ss_dssp             HC-----
T ss_pred             hhhccCC
Confidence            9999875

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=7.7e-57  Score=418.04  Aligned_cols=256  Identities=24%  Similarity=0.269  Sum_probs=214.7

Q ss_pred             CCcccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhcc
Q 018384           27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ  106 (357)
Q Consensus        27 ~~~~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~  106 (357)
                      ++.+...+.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++......
T Consensus        13 p~~~~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~   92 (278)
T 4f47_A           13 PANGESGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPG   92 (278)
T ss_dssp             ------CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC--------------
T ss_pred             CCCCCCCCceEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchh
Confidence            34445667899999999999999999999999999999999999999999999999999999999999999987653211


Q ss_pred             CChHHHHHHHHHHHHHHHHHh---cCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHh
Q 018384          107 GKLEECKDFFRTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS  183 (357)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~i~---~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  183 (357)
                         .... .......++..+.   ++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+
T Consensus        93 ---~~~~-~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~  168 (278)
T 4f47_A           93 ---DSFK-DGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLV  168 (278)
T ss_dssp             ------------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHH
T ss_pred             ---hhHH-HHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHH
Confidence               1111 0012233445566   99999999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHH
Q 018384          184 HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDI  262 (357)
Q Consensus       184 r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (357)
                      +++|.. +++|++||++++|+||+++||||+|+|++++.+.+..                                    
T Consensus       169 r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~------------------------------------  212 (278)
T 4f47_A          169 RQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALE------------------------------------  212 (278)
T ss_dssp             HHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHH------------------------------------
T ss_pred             HHhCHHHHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHH------------------------------------
Confidence            999999 9999999999999999999999999999998754443                                    


Q ss_pred             HHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCC
Q 018384          263 VDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISG  342 (357)
Q Consensus       263 ~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~  342 (357)
                                                     ++++|+..+|.+++.+|++++.....+++++++.|...+...+.   ++
T Consensus       213 -------------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~  258 (278)
T 4f47_A          213 -------------------------------IAEIIAANGPLAVQAILRTIRETEGMHENEAFKIDTRIGIEVFL---SD  258 (278)
T ss_dssp             -------------------------------HHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGG---SS
T ss_pred             -------------------------------HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CH
Confidence                                           48999999999999999999999988999999999999988887   99


Q ss_pred             ChhhhhhheeccCC
Q 018384          343 DFYEVSNFQILNKH  356 (357)
Q Consensus       343 d~~egi~afl~~r~  356 (357)
                      |++||++||++||+
T Consensus       259 d~~eg~~Af~ekr~  272 (278)
T 4f47_A          259 DAKEGPQAFAQKRK  272 (278)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999999986

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=1.7e-56  Score=412.98  Aligned_cols=250  Identities=20%  Similarity=0.277  Sum_probs=219.9

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      +++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...........
T Consensus         3 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (266)
T 3fdu_A            3 LHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGP   82 (266)
T ss_dssp             CCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSC
T ss_pred             CCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhh
Confidence            34679999999999999999999999999999999999999999999999999999999999999999863211111100


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                        .+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        83 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  160 (266)
T 3fdu_A           83 --AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKA  160 (266)
T ss_dssp             --GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHH
Confidence              1223445678889999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||+.++|+||+++||||+|+|  ++.+.+.                                             
T Consensus       161 ~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~---------------------------------------------  193 (266)
T 3fdu_A          161 AELLFTAKKFNAETALQAGLVNEIVE--DAYATAQ---------------------------------------------  193 (266)
T ss_dssp             HHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHH---------------------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHH---------------------------------------------
Confidence            99999999999999999999999998  6654333                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            +++++|+.+||.+++.+|++++... .+++++++.|...+...+.   ++|++||++|
T Consensus       194 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~---s~d~~eg~~a  247 (266)
T 3fdu_A          194 ----------------------ATAQHLTALPLASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQ---SPEMLEAVQA  247 (266)
T ss_dssp             ----------------------HHHHHHHTSCHHHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHT---CHHHHHHHHH
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  3489999999999999999999875 5799999999999999987   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |++||+
T Consensus       248 F~ekR~  253 (266)
T 3fdu_A          248 FMQKRQ  253 (266)
T ss_dssp             HC----
T ss_pred             HHcCCC
Confidence            999986

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=1.3e-56  Score=415.59  Aligned_cols=248  Identities=25%  Similarity=0.371  Sum_probs=225.3

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...    .... 
T Consensus        24 ~~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~-   98 (278)
T 3h81_A           24 YETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADL----TFAD-   98 (278)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTC----CHHH-
T ss_pred             CCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhcc----Chhh-
Confidence            46799999999999999999999999999999999999999999999999999999999999999998642    1111 


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                       .+.......+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        99 -~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~  177 (278)
T 3h81_A           99 -AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAM  177 (278)
T ss_dssp             -HHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence             1222222236788999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|++||++++|+||+++|||++|+|++++.+.+.                                              
T Consensus       178 ~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  211 (278)
T 3h81_A          178 DLILTGRTMDAAEAERSGLVSRVVPADDLLTEAR----------------------------------------------  211 (278)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH----------------------------------------------
T ss_pred             HHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988765433                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                           +++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||++||
T Consensus       212 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~AF  267 (278)
T 3h81_A          212 ---------------------ATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFA---TEDQSEGMAAF  267 (278)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTT---SHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 348999999999999999999999999999999999999999887   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      ++||+
T Consensus       268 ~ekR~  272 (278)
T 3h81_A          268 IEKRA  272 (278)
T ss_dssp             HTTSC
T ss_pred             HcCCC
Confidence            99986

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.1e-56  Score=413.45  Aligned_cols=248  Identities=23%  Similarity=0.277  Sum_probs=227.0

Q ss_pred             CCceEEEEeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGKAN-SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~~~-v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ++.|.++++++ |++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...    ....
T Consensus         8 ~~~i~~~~~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~   83 (263)
T 3moy_A            8 YTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTL----TPHQ   83 (263)
T ss_dssp             CSSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTC----CHHH
T ss_pred             CCeEEEEEeCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhcc----Cchh
Confidence            46799999998 999999999999999999999999999999999999999999999999999999987542    1111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                        .+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        84 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A  161 (263)
T 3moy_A           84 --ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKA  161 (263)
T ss_dssp             --HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHH
Confidence              2233445678889999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||++++|+||+++||||+|+|++++.+.+.                                             
T Consensus       162 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  196 (263)
T 3moy_A          162 MDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEAL---------------------------------------------  196 (263)
T ss_dssp             HHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988865443                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            +++++|+.+||.+++.+|++++.....+++++++.|...+...+.   ++|++||++|
T Consensus       197 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~A  251 (263)
T 3moy_A          197 ----------------------AVAQRIARMSRPAGRAVKDAINEAFERPLSAGMRYERDAFYAMFD---THDQTEGMTA  251 (263)
T ss_dssp             ----------------------HHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTT---SHHHHHHHHH
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  348899999999999999999999999999999999999999887   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |++||+
T Consensus       252 F~ekR~  257 (263)
T 3moy_A          252 FLEKRT  257 (263)
T ss_dssp             HHTTSC
T ss_pred             HHhCCC
Confidence            999986

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=2.3e-56  Score=413.00  Aligned_cols=253  Identities=20%  Similarity=0.236  Sum_probs=226.7

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhc-cCChHHH
Q 018384           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-QGKLEEC  112 (357)
Q Consensus        34 ~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~-~~~~~~~  112 (357)
                      +.+.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++..... .+.....
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (269)
T 1nzy_A            3 EAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHF   82 (269)
T ss_dssp             SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHH
Confidence            568899999999999999999999999999999999999999999999999999999999999998643100 0001111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  162 (269)
T 1nzy_A           83 RIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAM  162 (269)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHH
Confidence            23445567888899999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|++||++++|+||+++||||+|+|++++.+.+.                                              
T Consensus       163 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  196 (269)
T 1nzy_A          163 ELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAW----------------------------------------------  196 (269)
T ss_dssp             HHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999877754333                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                           +++++|++.||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|
T Consensus       197 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~egi~af  252 (269)
T 1nzy_A          197 ---------------------KVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVT---HPHFMPCLTRF  252 (269)
T ss_dssp             ---------------------HHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH---STTHHHHHHHH
T ss_pred             ---------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence                                 348899999999999999999998888999999999999999988   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      ++||+
T Consensus       253 ~ekr~  257 (269)
T 1nzy_A          253 LDGHR  257 (269)
T ss_dssp             HTTCC
T ss_pred             HhcCC
Confidence            99885

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=4e-56  Score=412.65  Aligned_cols=256  Identities=21%  Similarity=0.294  Sum_probs=209.2

Q ss_pred             ccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCCh
Q 018384           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        30 ~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      ...++.+.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.........
T Consensus         5 ~~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~   84 (276)
T 2j5i_A            5 EGRWKTVKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPE   84 (276)
T ss_dssp             TTCCSSEEEEEETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCT
T ss_pred             cCCCceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchh
Confidence            34566789999999999999999999999999999999999999999999999999999999999999987542211111


Q ss_pred             HHHHHHHHHHHHH-HHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          110 EECKDFFRTLYSF-IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       110 ~~~~~~~~~~~~l-~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      .....+......+ +..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  164 (276)
T 2j5i_A           85 ILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGH  164 (276)
T ss_dssp             THHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCH
Confidence            1122222223343 667889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++|++||++++|+||+++|||++|+|++++.+.+.                                          
T Consensus       165 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------  202 (276)
T 2j5i_A          165 RQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI------------------------------------------  202 (276)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHH------------------------------------------
T ss_pred             HHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHH------------------------------------------
Confidence            8 999999999999999999999999999877765443                                          


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHh--hhcCCCC-Ch
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG--VSRLISG-DF  344 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~--~~~~~s~-d~  344 (357)
                                               +++++|+++||.+++.+|++++.....+++++++.|...+...  +.   ++ |+
T Consensus       203 -------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---s~~d~  254 (276)
T 2j5i_A          203 -------------------------ELARNLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLD---TEGGR  254 (276)
T ss_dssp             -------------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC--------
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC---ChHHH
Confidence                                     3489999999999999999999998889999999888876554  44   88 99


Q ss_pred             hhhhhheeccC
Q 018384          345 YEVSNFQILNK  355 (357)
Q Consensus       345 ~egi~afl~~r  355 (357)
                      +||++||++||
T Consensus       255 ~eg~~AF~ekr  265 (276)
T 2j5i_A          255 EQGMKQFLDDK  265 (276)
T ss_dssp             -----------
T ss_pred             HHHHHHHHhcc
Confidence            99999999998

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=4.1e-56  Score=408.71  Aligned_cols=249  Identities=29%  Similarity=0.371  Sum_probs=222.1

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.+.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++....   .....
T Consensus         2 m~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~~~~~   78 (257)
T 2ej5_A            2 YETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEM---DHGDV   78 (257)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC----------CHHHH
T ss_pred             CCceEEEeECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhcc---chhHH
Confidence            367899999999999999999999999999999999999999999999999999999999999999875421   11111


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ...  .++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        79 ~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  156 (257)
T 2ej5_A           79 LRS--RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKAL  156 (257)
T ss_dssp             HHH--THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             HHH--HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHH
Confidence            111  256778899999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|++||++++|+||+++||||+|+|++++.+.+..                                             
T Consensus       157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~---------------------------------------------  191 (257)
T 2ej5_A          157 ELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQ---------------------------------------------  191 (257)
T ss_dssp             HHHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHH---------------------------------------------
T ss_pred             HHHHhCCccCHHHHHHcCCcceecChhHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999998887654433                                             


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                            ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|
T Consensus       192 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af  246 (257)
T 2ej5_A          192 ----------------------FAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGL---TSDHREGVKAF  246 (257)
T ss_dssp             ----------------------HHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH---SHHHHHHHHHH
T ss_pred             ----------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---ChHHHHHHHHH
Confidence                                  38899999999999999999999888999999999999999888   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      ++||+
T Consensus       247 ~ekr~  251 (257)
T 2ej5_A          247 FEKRK  251 (257)
T ss_dssp             TTTCC
T ss_pred             hcCCC
Confidence            99885

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=6.7e-56  Score=412.67  Aligned_cols=248  Identities=18%  Similarity=0.214  Sum_probs=230.7

Q ss_pred             ceEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           35 QVLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        35 ~i~~~~~--~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      .|.++++  ++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..   .......
T Consensus        25 ~v~~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~---~~~~~~~  101 (286)
T 3myb_A           25 PLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRA---EPSREYY  101 (286)
T ss_dssp             CSEEEEECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHS---SCCHHHH
T ss_pred             eEEEEEecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhc---cccHHHH
Confidence            3899999  9999999999999999999999999999999999999999999999999999999999864   2234455


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ ++|++++|++++|.. ++
T Consensus       102 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~  180 (286)
T 3myb_A          102 EKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAF  180 (286)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHH
Confidence            6677778889999999999999999999999999999999999999999999999999999 788999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|++||++++|+||+++||||+|+|++++.+.+..                                             
T Consensus       181 ~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~---------------------------------------------  215 (286)
T 3myb_A          181 EMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEA---------------------------------------------  215 (286)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHH---------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888754443                                             


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                            ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|
T Consensus       216 ----------------------~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~egi~aF  270 (286)
T 3myb_A          216 ----------------------MVSKIVAKPRAAVAMGKALFYRQIETDIESAYADAGTTMACNMM---DPSALEGVSAF  270 (286)
T ss_dssp             ----------------------HHHHHHHSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH---SHHHHHHHHHH
T ss_pred             ----------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                  38899999999999999999999889999999999999999998   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      ++||+
T Consensus       271 lekr~  275 (286)
T 3myb_A          271 LEKRR  275 (286)
T ss_dssp             HTTSC
T ss_pred             HccCC
Confidence            99986

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=4.2e-57  Score=422.94  Aligned_cols=260  Identities=21%  Similarity=0.203  Sum_probs=186.2

Q ss_pred             CCcccCCCceEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHh--
Q 018384           27 SVTDDLCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHF--  103 (357)
Q Consensus        27 ~~~~~~~~~i~~~~~~-~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~--  103 (357)
                      +...+.++.|.+++++ +|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...  
T Consensus        22 m~~~~~~~~v~~~~~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~  101 (298)
T 3qre_A           22 MSAADAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAG  101 (298)
T ss_dssp             ------CCSEEEEECTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC----------
T ss_pred             cCCCCCCCeEEEEEeCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccc
Confidence            3333456889999999 9999999999999999999999999999999999999999999999999999999987541  


Q ss_pred             hccCCh--HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHH
Q 018384          104 MNQGKL--EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFY  181 (357)
Q Consensus       104 ~~~~~~--~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~  181 (357)
                      ......  .....+....+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~  181 (298)
T 3qre_A          102 YDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWI  181 (298)
T ss_dssp             -------------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHH
Confidence            101000  011122223345677889999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHH
Q 018384          182 LSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI  260 (357)
Q Consensus       182 l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (357)
                      |+|++|.. |++|++||++|+|+||+++|||++|+|++++.+.+.+                                  
T Consensus       182 L~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~----------------------------------  227 (298)
T 3qre_A          182 LPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALE----------------------------------  227 (298)
T ss_dssp             HHHHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHH----------------------------------
T ss_pred             HHHhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHH----------------------------------
Confidence            99999999 9999999999999999999999999999888754443                                  


Q ss_pred             HHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhc-CchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcC
Q 018384          261 DIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRL  339 (357)
Q Consensus       261 ~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~-~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~  339 (357)
                                                       ++++|+.+ ||.+++.+|++++.....+++++++.|...+...+.  
T Consensus       228 ---------------------------------~A~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~--  272 (298)
T 3qre_A          228 ---------------------------------YAEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHAEVLLREAMP--  272 (298)
T ss_dssp             ---------------------------------HHHHHHHHSCHHHHHHHHHHHHGGGGC--------------------
T ss_pred             ---------------------------------HHHHHHccCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC--
Confidence                                             38899998 999999999999999999999999999998888887  


Q ss_pred             CCCChhhhhhheeccCC
Q 018384          340 ISGDFYEVSNFQILNKH  356 (357)
Q Consensus       340 ~s~d~~egi~afl~~r~  356 (357)
                       ++|++||++||++||+
T Consensus       273 -s~d~~Egv~AF~ekR~  288 (298)
T 3qre_A          273 -RPDVIEGIVSFLEKRP  288 (298)
T ss_dssp             -----------------
T ss_pred             -CHHHHHHHHHHHcCCC
Confidence             9999999999999986

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=4.6e-57  Score=415.62  Aligned_cols=248  Identities=21%  Similarity=0.212  Sum_probs=207.7

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      .++..|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..........
T Consensus         8 ~~m~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   87 (262)
T 3r9q_A            8 EMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHP   87 (262)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCT
T ss_pred             ccCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHH
Confidence            44567999999999999999999999999999999999999999999999999999999999999999875432110000


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                            .....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        88 ------~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  161 (262)
T 3r9q_A           88 ------HGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSR  161 (262)
T ss_dssp             ------TSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHH
T ss_pred             ------hhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHH
Confidence                  0011233456689999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|++||++++|+||+++|||++|+|++++.+.+..                                           
T Consensus       162 A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~-------------------------------------------  198 (262)
T 3r9q_A          162 AMDLILTGRPVHANEALDIGLVNRVVARGQAREAAET-------------------------------------------  198 (262)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHH-------------------------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHcCCccEecChhHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999999998764443                                           


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                              ++++|++.||.+++.+|++++.....+++++++.|.. +...+.   + |++||++
T Consensus       199 ------------------------~a~~la~~~~~a~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~---s-d~~Eg~~  249 (262)
T 3r9q_A          199 ------------------------LAAEIAAFPQQCVRADRDSAIAQWGMAEEAALDNEFG-SIERVA---T-EALEGAG  249 (262)
T ss_dssp             ------------------------HHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHH---C--------
T ss_pred             ------------------------HHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhc---c-HHHHHHH
Confidence                                    4899999999999999999999999999999999999 888887   8 9999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      ||++||+
T Consensus       250 AF~ekr~  256 (262)
T 3r9q_A          250 RFAAGEG  256 (262)
T ss_dssp             -------
T ss_pred             HHHcCCC
Confidence            9999986

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=7.4e-56  Score=413.18  Aligned_cols=258  Identities=21%  Similarity=0.242  Sum_probs=224.2

Q ss_pred             CcccCCCceEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhcc
Q 018384           28 VTDDLCNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ  106 (357)
Q Consensus        28 ~~~~~~~~i~~~~~~~v~~I~ln-~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~  106 (357)
                      .....++.|.++++++|++|||| ||++.|+||.+|+.+|.+++++++.|+. ++|||||.|++||+|+|++++......
T Consensus        17 ~~~~~~~~v~~~~~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~   95 (291)
T 2fbm_A           17 RGSSTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRN   95 (291)
T ss_dssp             ----CCSSEEEEECSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHH
T ss_pred             CCCCCcceEEEEEeCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccc
Confidence            34566778999999999999999 6999999999999999999999999875 999999999999999999987542211


Q ss_pred             CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcC
Q 018384          107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (357)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (357)
                      ........+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~v  175 (291)
T 2fbm_A           96 NRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMM  175 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHH
Confidence            11122233445566788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHH
Q 018384          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  265 (357)
Q Consensus       187 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (357)
                      |.. |++|++||++++|+||+++|||++|+|++++.+.+..                                       
T Consensus       176 G~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~---------------------------------------  216 (291)
T 2fbm_A          176 GKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMI---------------------------------------  216 (291)
T ss_dssp             CHHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHH---------------------------------------
T ss_pred             hHHHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHH---------------------------------------
Confidence            998 9999999999999999999999999999998754443                                       


Q ss_pred             HcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018384          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  345 (357)
Q Consensus       266 ~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~  345 (357)
                                                  ++++|++.||.+++.+|++++.....+++++++.|...+...+.   ++|++
T Consensus       217 ----------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~  265 (291)
T 2fbm_A          217 ----------------------------QIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWS---SAQGI  265 (291)
T ss_dssp             ----------------------------HHHHHTTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHT---SHHHH
T ss_pred             ----------------------------HHHHHHhCCHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhc---CHHHH
Confidence                                        38899999999999999999988877899999999999988887   99999


Q ss_pred             hhhhhe-eccCC
Q 018384          346 EVSNFQ-ILNKH  356 (357)
Q Consensus       346 egi~af-l~~r~  356 (357)
                      ||++|| ++||+
T Consensus       266 eg~~Af~~ekR~  277 (291)
T 2fbm_A          266 ESMLKIPLLGYK  277 (291)
T ss_dssp             HHHHTC------
T ss_pred             HHHHHHHhcCCC
Confidence            999999 99875

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=8e-56  Score=407.69  Aligned_cols=253  Identities=19%  Similarity=0.240  Sum_probs=226.3

Q ss_pred             CCceEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln-~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ++.+.++++++|++|||| ||++.|+||.+|+.+|.+++++++.|+. ++|||||.|++||+|+|++++...........
T Consensus         4 ~~~i~~~~~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (261)
T 2gtr_A            4 YRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRE   82 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEESSSCSBCEECHHHHHHHHHHCHHHH
T ss_pred             cceEEEEEeCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecCCCccccccCchhhhhccccchhhH
Confidence            456889999999999999 6999999999999999999999999874 99999999999999999998754221111122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  162 (261)
T 2gtr_A           83 STKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASA  162 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHH
Confidence            334445567788899999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||++++|+||+++|||++|+|++++.+.+..                                            
T Consensus       163 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------  198 (261)
T 2gtr_A          163 NEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMV--------------------------------------------  198 (261)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHH--------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999998888654433                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                             ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++
T Consensus       199 -----------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a  252 (261)
T 2gtr_A          199 -----------------------RIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWG---SAQGMDSMLK  252 (261)
T ss_dssp             -----------------------HHHHHHTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH---STTTTHHHHH
T ss_pred             -----------------------HHHHHHhCCHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                   38899999999999999999988877899999999999998888   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |++||+
T Consensus       253 f~ekr~  258 (261)
T 2gtr_A          253 YLQRKI  258 (261)
T ss_dssp             HHHHHH
T ss_pred             HHccCC
Confidence            999874

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.9e-55  Score=405.99  Aligned_cols=250  Identities=18%  Similarity=0.176  Sum_probs=227.8

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEec-CCCccccccChHHHHHhhccCCh
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SGRAFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g-~g~~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      ..++.+.++++++|++|||||| +.|+||.+|+.+|.+++++++.|+++++||||| .|++||+|+|++++..    .. 
T Consensus         6 ~~~~~i~~~~~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~----~~-   79 (265)
T 2ppy_A            6 TKKQYLTVFKEDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS----AD-   79 (265)
T ss_dssp             EECSSEEEEEETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT----SC-
T ss_pred             CCCCeEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc----cc-
Confidence            3466799999999999999999 899999999999999999999999999999999 8999999999998753    11 


Q ss_pred             HHHHHHHHHH-HHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCce-EEecccccccccCCCcHHHHHhhcCh
Q 018384          110 EECKDFFRTL-YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPG  187 (357)
Q Consensus       110 ~~~~~~~~~~-~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (357)
                      .....+...+ +.++.++.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++|++|++|++++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG  159 (265)
T 2ppy_A           80 PRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIG  159 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhC
Confidence            1223344445 678889999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 018384          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (357)
Q Consensus       188 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (357)
                      .. +++|++||++++|+||+++||||+|+|++++.+.+..                                        
T Consensus       160 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~----------------------------------------  199 (265)
T 2ppy_A          160 YSRALDMNITGETITPQEALEIGLVNRVFPQAETRERTRE----------------------------------------  199 (265)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHH----------------------------------------
T ss_pred             HHHHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHH----------------------------------------
Confidence            98 9999999999999999999999999998888654433                                        


Q ss_pred             cCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018384          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (357)
Q Consensus       267 ~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~e  346 (357)
                                                 ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++|
T Consensus       200 ---------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~e  249 (265)
T 2ppy_A          200 ---------------------------YARKLANSATYAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFR---SEDAKE  249 (265)
T ss_dssp             ---------------------------HHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHHHHH
T ss_pred             ---------------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHH
Confidence                                       38899999999999999999999888999999999999998887   999999


Q ss_pred             hhhheeccCC
Q 018384          347 VSNFQILNKH  356 (357)
Q Consensus       347 gi~afl~~r~  356 (357)
                      |+++|++||+
T Consensus       250 gi~af~ekr~  259 (265)
T 2ppy_A          250 GLSAFLEKRQ  259 (265)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHcCCC
Confidence            9999999985

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=9.3e-56  Score=410.36  Aligned_cols=252  Identities=19%  Similarity=0.246  Sum_probs=225.0

Q ss_pred             CCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccC---C
Q 018384           33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG---K  108 (357)
Q Consensus        33 ~~~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~---~  108 (357)
                      ++.+.+++ +++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.......   +
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence            45688887 5789999999999999999999999999999999999999999999999999999999876531111   1


Q ss_pred             h----HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhh
Q 018384          109 L----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH  184 (357)
Q Consensus       109 ~----~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r  184 (357)
                      .    .....+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r  161 (275)
T 1dci_A           82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK  161 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHH
Confidence            1    112233445667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChH-H-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHH
Q 018384          185 LPGH-L-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (357)
Q Consensus       185 ~~g~-~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (357)
                      ++|. . +++|++||++++|+||+++||||+|+|+ +++.+.+.                                    
T Consensus       162 ~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~------------------------------------  205 (275)
T 1dci_A          162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAF------------------------------------  205 (275)
T ss_dssp             TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHH------------------------------------
T ss_pred             HhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHH------------------------------------
Confidence            9998 8 9999999999999999999999999998 67654333                                    


Q ss_pred             HHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCC
Q 018384          262 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  341 (357)
Q Consensus       262 ~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s  341 (357)
                                                     +++++|+++||.+++.+|++++.....+++++++.|...+...+.   +
T Consensus       206 -------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s  251 (275)
T 1dci_A          206 -------------------------------ALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ---T  251 (275)
T ss_dssp             -------------------------------HHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS---S
T ss_pred             -------------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---C
Confidence                                           348999999999999999999999888999999999999888887   9


Q ss_pred             CChhhhhhheecc
Q 018384          342 GDFYEVSNFQILN  354 (357)
Q Consensus       342 ~d~~egi~afl~~  354 (357)
                      +|++||++||++|
T Consensus       252 ~d~~eg~~af~ek  264 (275)
T 1dci_A          252 QDIIKSVQAAMEK  264 (275)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999998

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1e-56  Score=416.55  Aligned_cols=256  Identities=20%  Similarity=0.259  Sum_probs=221.8

Q ss_pred             ccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhc--cC
Q 018384           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN--QG  107 (357)
Q Consensus        30 ~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~--~~  107 (357)
                      .+|++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.....  ..
T Consensus         7 ~~m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (274)
T 3tlf_A            7 VDSFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYE   86 (274)
T ss_dssp             -CCCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC-------------
T ss_pred             CCcCCceEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccc
Confidence            3467789999999999999999999999999999999999999999999999999999999999999998765321  00


Q ss_pred             -ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcC
Q 018384          108 -KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (357)
Q Consensus       108 -~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (357)
                       ........+..++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| +|++++|++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~v  165 (274)
T 3tlf_A           87 RPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVL  165 (274)
T ss_dssp             -CTTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTS
T ss_pred             cchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHh
Confidence             0000011111234566778999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             hHH-HHHHHhcCC--CCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHH
Q 018384          187 GHL-GEFLALTGA--KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV  263 (357)
Q Consensus       187 g~~-a~~l~ltG~--~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (357)
                      |.. +++|++||+  +|+|+||+++|||++|+|++++.+.+.                                      
T Consensus       166 G~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------  207 (274)
T 3tlf_A          166 PRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAH--------------------------------------  207 (274)
T ss_dssp             CHHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHH--------------------------------------
T ss_pred             CHHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHH--------------------------------------
Confidence            999 999999999  999999999999999999988865443                                      


Q ss_pred             HHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 018384          264 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  343 (357)
Q Consensus       264 ~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d  343 (357)
                                                   +++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|
T Consensus       208 -----------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d  255 (274)
T 3tlf_A          208 -----------------------------EIADIVNSNAPLAVRGTRLAILKGLNVPLHEAEILAETFRERVLR---TED  255 (274)
T ss_dssp             -----------------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHH
T ss_pred             -----------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHH
Confidence                                         348999999999999999999999989999999999999999987   999


Q ss_pred             hhhhhhheeccCC
Q 018384          344 FYEVSNFQILNKH  356 (357)
Q Consensus       344 ~~egi~afl~~r~  356 (357)
                      ++||++||++||+
T Consensus       256 ~~eg~~af~ekr~  268 (274)
T 3tlf_A          256 AAEGPRAFVEKRQ  268 (274)
T ss_dssp             HHHHHHHHHTTSC
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999999986

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=7.3e-56  Score=408.70  Aligned_cols=247  Identities=23%  Similarity=0.263  Sum_probs=219.3

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++ ...   .  . ..
T Consensus         8 ~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~---~--~-~~   80 (265)
T 3rsi_A            8 ARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW---M--V-RD   80 (265)
T ss_dssp             -CCEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------
T ss_pred             CCcEEEEEECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc---c--c-ch
Confidence            567999999999999999999999999999999999999999999999999999999999999998 211   1  1 11


Q ss_pred             HHHHHHHHH-HHHHH-h--cCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          113 KDFFRTLYS-FIYLL-G--THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       113 ~~~~~~~~~-l~~~i-~--~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      ..+....+. ++..+ .  ++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  160 (265)
T 3rsi_A           81 GSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPY  160 (265)
T ss_dssp             ----CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCH
T ss_pred             HHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence            122222345 77888 8  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++|++||++++|+||+++||||+|+|++++.+.+..                                         
T Consensus       161 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~-----------------------------------------  199 (265)
T 3rsi_A          161 TKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARS-----------------------------------------  199 (265)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHH-----------------------------------------
Confidence            9 9999999999999999999999999999998754443                                         


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                                ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||
T Consensus       200 --------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg  250 (265)
T 3rsi_A          200 --------------------------LADRIVRNGPLAVRNAKEAIVRSGWLAEEDARAIEARLTRPVIT---SADAREG  250 (265)
T ss_dssp             --------------------------HHHHHHTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             --------------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                      48999999999999999999999988999999999999999997   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      ++||++||+
T Consensus       251 ~~af~ekr~  259 (265)
T 3rsi_A          251 LAAFKEKRE  259 (265)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHcCCC
Confidence            999999986

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=9.4e-56  Score=410.83  Aligned_cols=255  Identities=21%  Similarity=0.250  Sum_probs=215.7

Q ss_pred             ccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCCh
Q 018384           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        30 ~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      +..++.+.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++ +|||||.|++||+|+|++++..... ...
T Consensus        22 ~~~~~~i~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~-~~~   99 (280)
T 2f6q_A           22 SMGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPP-GGV   99 (280)
T ss_dssp             EEECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCT-THH
T ss_pred             cCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCc-chh
Confidence            33566799999999999999999999999999999999999999999999 9999999999999999998753210 111


Q ss_pred             HH-HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          110 EE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       110 ~~-~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      .. ...+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  179 (280)
T 2f6q_A          100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSP  179 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCH
Confidence            11 12233456678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++|++||++++|+||+++|||++|+|++++.+.+..                                         
T Consensus       180 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~-----------------------------------------  218 (280)
T 2f6q_A          180 AKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWT-----------------------------------------  218 (280)
T ss_dssp             HHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHH-----------------------------------------
Confidence            8 9999999999999999999999999999988654433                                         


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                                ++++|+..||.+++.+|++++.....+++++++.|.+.+...+.   ++|++||
T Consensus       219 --------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg  269 (280)
T 2f6q_A          219 --------------------------RLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWL---SDECTNA  269 (280)
T ss_dssp             --------------------------HHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHT---SHHHHC-
T ss_pred             --------------------------HHHHHHhCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                      38899999999999999999988877899999999999998887   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +++|++||+
T Consensus       270 ~~af~ekR~  278 (280)
T 2f6q_A          270 VVNFLSRKS  278 (280)
T ss_dssp             ---------
T ss_pred             HHHHHccCC
Confidence            999999985

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.4e-56  Score=413.58  Aligned_cols=250  Identities=17%  Similarity=0.138  Sum_probs=225.0

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.+.++++++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.|+.||+|+|++++..........  
T Consensus         8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~--   85 (265)
T 3swx_A            8 YETLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASL--   85 (265)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCC--
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHH--
Confidence            467999999999999999999999999999999999999999999999999999999999999999986543211110  


Q ss_pred             HHHHHHHHHHHHHH-hcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          113 KDFFRTLYSFIYLL-GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       113 ~~~~~~~~~l~~~i-~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                        +......++..+ .++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        86 --~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  163 (265)
T 3swx_A           86 --TPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNA  163 (265)
T ss_dssp             --CCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHH
Confidence              111122345567 899999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||++++|+||+++||||+|+|++++.+.+..                                            
T Consensus       164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------  199 (265)
T 3swx_A          164 MRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIA--------------------------------------------  199 (265)
T ss_dssp             HHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHH--------------------------------------------
T ss_pred             HHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999998754443                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                             ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||++|
T Consensus       200 -----------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a  253 (265)
T 3swx_A          200 -----------------------IAQTIARQAPLGVQATLRNARLAVREGDAAAEEQLVPTVRELFT---SEDATLGVQA  253 (265)
T ss_dssp             -----------------------HHHHHHHSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred             -----------------------HHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                   38999999999999999999999888999999999999999997   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |++||+
T Consensus       254 f~ekr~  259 (265)
T 3swx_A          254 FLSRTT  259 (265)
T ss_dssp             HHTTCC
T ss_pred             HhcCCC
Confidence            999986

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=1.8e-55  Score=404.69  Aligned_cols=248  Identities=23%  Similarity=0.283  Sum_probs=224.5

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      +..+.++.+++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...    ... .
T Consensus         4 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~-~   78 (258)
T 2pbp_A            4 FVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKD----DPI-R   78 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTC----CHH-H
T ss_pred             cceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc----cch-h
Confidence            34688899999999999999999999999999999999999999999999999999999999999987532    111 1


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+...+ .++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        79 ~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  157 (258)
T 2pbp_A           79 LEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRAL  157 (258)
T ss_dssp             HHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             HHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHH
Confidence            2222223 567788999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|++||+.++|+||+++||||+|+|++++.+.+..                                             
T Consensus       158 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~---------------------------------------------  192 (258)
T 2pbp_A          158 EWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMR---------------------------------------------  192 (258)
T ss_dssp             HHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHH---------------------------------------------
T ss_pred             HHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999998887654432                                             


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                            ++++|+..||.+++.+|++++.....+++++++.|.+.+...+.   ++|++||+++|
T Consensus       193 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af  247 (258)
T 2pbp_A          193 ----------------------LAGRLAEQPPLALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFA---SEDQKEGMAAF  247 (258)
T ss_dssp             ----------------------HHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT---SHHHHHHHHHH
T ss_pred             ----------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                  38899999999999999999999888999999999999998887   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      ++||+
T Consensus       248 ~ekr~  252 (258)
T 2pbp_A          248 LEKRK  252 (258)
T ss_dssp             HTTSC
T ss_pred             HccCC
Confidence            99985

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=1.4e-55  Score=403.67  Aligned_cols=247  Identities=15%  Similarity=0.201  Sum_probs=205.2

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEec-CCCccccccChHHHHHhhccCChHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g-~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (357)
                      +.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++||||| .|++||+|+|++++....   .......
T Consensus         2 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~---~~~~~~~   78 (250)
T 2a7k_A            2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLS---RSEDIEE   78 (250)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC----CHHHHHH
T ss_pred             eEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcC---chhhHHH
Confidence            678889999999999999999999999999999999999999999999999 899999999999875421   1122134


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHH
Q 018384          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (357)
Q Consensus       115 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (357)
                      +...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|.. +++|
T Consensus        79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l  157 (250)
T 2a7k_A           79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEI  157 (250)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHH
Confidence            44556788899999999999999999999999999999999999999999999999999999999 999999998 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHH
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  273 (357)
                      ++||++++|+||+++||||+|+|++++.+.+.                                                
T Consensus       158 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------------  189 (250)
T 2a7k_A          158 IYQCQSLDAPRCVDYRLVNQVVESSALLDAAI------------------------------------------------  189 (250)
T ss_dssp             HHHCCCBCHHHHHHHTCCSEEECHHHHHHHHH------------------------------------------------
T ss_pred             HHcCCcccHHHHHHcCCcceecCHHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999877754333                                                


Q ss_pred             HHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 018384          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL  353 (357)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~  353 (357)
                                         +++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|++
T Consensus       190 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af~e  247 (250)
T 2a7k_A          190 -------------------TQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQ---ARDAQGHFKNVLG  247 (250)
T ss_dssp             -------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             -------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHh
Confidence                               348899999999999999999998877899999999998888877   9999999999999


Q ss_pred             cCC
Q 018384          354 NKH  356 (357)
Q Consensus       354 ~r~  356 (357)
                      ||+
T Consensus       248 kr~  250 (250)
T 2a7k_A          248 KKY  250 (250)
T ss_dssp             ---
T ss_pred             cCC
Confidence            984

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=2.2e-55  Score=406.03  Aligned_cols=252  Identities=21%  Similarity=0.204  Sum_probs=221.6

Q ss_pred             CCCceEEE----EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccC
Q 018384           32 LCNQVLVE----GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG  107 (357)
Q Consensus        32 ~~~~i~~~----~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~  107 (357)
                      |.+.+.++    .+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.......
T Consensus         5 m~~~v~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~   84 (267)
T 3oc7_A            5 MDALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPS   84 (267)
T ss_dssp             CCSSEEEECHHHHSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------
T ss_pred             cccccCCCCccceeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCch
Confidence            44678888    89999999999999999999999999999999999999999999999999999999999875211111


Q ss_pred             C-hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcC
Q 018384          108 K-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (357)
Q Consensus       108 ~-~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (357)
                      . ......+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+ ++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~v  163 (267)
T 3oc7_A           85 SAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KL  163 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TS
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-Hh
Confidence            1 111234566778889999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHH
Q 018384          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  265 (357)
Q Consensus       187 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (357)
                      |.. +++|++||++++|+||+++||||+|  ++++.+.+.                                        
T Consensus       164 G~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~----------------------------------------  201 (267)
T 3oc7_A          164 SARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAID----------------------------------------  201 (267)
T ss_dssp             CHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHH----------------------------------------
T ss_pred             CHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHH----------------------------------------
Confidence            998 9999999999999999999999999  677765443                                        


Q ss_pred             HcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018384          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  345 (357)
Q Consensus       266 ~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~  345 (357)
                                                 +++++|++.||.+++.+|++++.....+++++++.|...+...+.   ++|++
T Consensus       202 ---------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~  251 (267)
T 3oc7_A          202 ---------------------------QLVTDVGRGSPQGLAASKALTTAAVLERFDRDAERLAEESARLFV---SDEAR  251 (267)
T ss_dssp             ---------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SHHHH
T ss_pred             ---------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHH
Confidence                                       348999999999999999999999888999999999999999997   99999


Q ss_pred             hhhhheeccCC
Q 018384          346 EVSNFQILNKH  356 (357)
Q Consensus       346 egi~afl~~r~  356 (357)
                      ||+++|++||+
T Consensus       252 eg~~af~ekr~  262 (267)
T 3oc7_A          252 EGMLAFLEKRS  262 (267)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999986

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=5.1e-57  Score=416.29  Aligned_cols=251  Identities=21%  Similarity=0.289  Sum_probs=225.0

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      .|++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++..........
T Consensus         4 ~m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   83 (265)
T 3qxz_A            4 SMVTELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNP   83 (265)
T ss_dssp             --CCEEEEEEETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSS
T ss_pred             CccceEEEEEECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999875432111111


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                          ++.. +.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        84 ----~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (265)
T 3qxz_A           84 ----DFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAV  158 (265)
T ss_dssp             ----CCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHH
T ss_pred             ----HHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence                1112 4566788999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|++||++++|+||+++||||+|+|++++.+.+.                                            
T Consensus       159 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  194 (265)
T 3qxz_A          159 AAELLLTGASFSAQRAVETGLANRCLPAGKVLGAAL--------------------------------------------  194 (265)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999877764433                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhc-CchHHHHHHHHHHhhhcCCHHHH--HHHHHHHHHHhhhcCCCCChhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDEC--LVREYRMSLQGVSRLISGDFYE  346 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~-~p~a~~~~k~~l~~~~~~~l~~~--l~~e~~~~~~~~~~~~s~d~~e  346 (357)
                                             +++++|+.+ ||.+++.+|++++.....+++++  ++.|...+...+.   ++|++|
T Consensus       195 -----------------------~~a~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~---s~d~~e  248 (265)
T 3qxz_A          195 -----------------------RMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHLRLMG---SQDAAE  248 (265)
T ss_dssp             -----------------------HHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT---STHHHH
T ss_pred             -----------------------HHHHHHHccCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhC---ChHHHH
Confidence                                   348999999 99999999999999988889999  9999999999987   999999


Q ss_pred             hhhheeccCC
Q 018384          347 VSNFQILNKH  356 (357)
Q Consensus       347 gi~afl~~r~  356 (357)
                      |++||++||+
T Consensus       249 gi~Af~ekr~  258 (265)
T 3qxz_A          249 GPRAFIDGRP  258 (265)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHcCCC
Confidence            9999999986

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=7.3e-56  Score=406.44  Aligned_cols=245  Identities=20%  Similarity=0.268  Sum_probs=222.2

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      |++.+.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.....  ... 
T Consensus         5 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~~-   81 (256)
T 3trr_A            5 MADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEA--VLS-   81 (256)
T ss_dssp             CCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCC--CEE-
T ss_pred             CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccc--hhh-
Confidence            45679999999999999999999999999999999999999999999999999999999999999999865211  110 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...+     . +..+ .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        82 ~~~~-----~-~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  154 (256)
T 3trr_A           82 ERGL-----G-FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA  154 (256)
T ss_dssp             TTEE-----T-TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred             hhhh-----h-HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence            0001     1 1234 89999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||++++|+||+++||||+|+|++++.+.+.                                             
T Consensus       155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  189 (256)
T 3trr_A          155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTAL---------------------------------------------  189 (256)
T ss_dssp             HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHH---------------------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999999875444                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                            +++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||++|
T Consensus       190 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~a  244 (256)
T 3trr_A          190 ----------------------ELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFV---SEDAKEGAKA  244 (256)
T ss_dssp             ----------------------HHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  348999999999999999999999999999999999999999998   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |++||+
T Consensus       245 f~ekr~  250 (256)
T 3trr_A          245 FAEKRA  250 (256)
T ss_dssp             HHTTSC
T ss_pred             HhcCCC
Confidence            999986

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=2e-55  Score=409.62  Aligned_cols=250  Identities=16%  Similarity=0.173  Sum_probs=227.7

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      +..+.++++++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...   ......
T Consensus        32 ~~~v~~~~~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~---~~~~~~  108 (287)
T 2vx2_A           32 PRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEE---QGRDYH  108 (287)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGG---GCHHHH
T ss_pred             CcceEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcc---cchhHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999886432   122333


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++ |++++|.. ++
T Consensus       109 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~  187 (287)
T 2vx2_A          109 AEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVAL  187 (287)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHH
Confidence            44556677888999999999999999999999999999999999999999999999999999999999 99999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|++||++|+|+||+++|||++|||++++.+.+..                                             
T Consensus       188 ~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~---------------------------------------------  222 (287)
T 2vx2_A          188 EMLFTGEPISAQEALLHGLLSKVVPEAELQEETMR---------------------------------------------  222 (287)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHH---------------------------------------------
T ss_pred             HHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999998888654443                                             


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                            ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|
T Consensus       223 ----------------------~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~egi~af  277 (287)
T 2vx2_A          223 ----------------------IARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLA---LRDGQEGITAF  277 (287)
T ss_dssp             ----------------------HHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHH
T ss_pred             ----------------------HHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                  38899999999999999999998888999999999999998887   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      ++||+
T Consensus       278 ~ekr~  282 (287)
T 2vx2_A          278 LQKRK  282 (287)
T ss_dssp             HTTSC
T ss_pred             HcCCC
Confidence            99885

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=4.4e-56  Score=409.89  Aligned_cols=250  Identities=22%  Similarity=0.282  Sum_probs=215.5

Q ss_pred             CCcccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhcc
Q 018384           27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ  106 (357)
Q Consensus        27 ~~~~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~  106 (357)
                      ....++++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|.|++++......
T Consensus         8 ~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~   87 (265)
T 3qxi_A            8 ELNGDTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENV   87 (265)
T ss_dssp             -------CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCC
T ss_pred             cccCCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchh
Confidence            34455778899999999999999999999999999999999999999999999999999999999999999987543211


Q ss_pred             CChHHHHHHHHHHHHH-HHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhc
Q 018384          107 GKLEECKDFFRTLYSF-IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  185 (357)
Q Consensus       107 ~~~~~~~~~~~~~~~l-~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~  185 (357)
                        ....       ..+ +..+.. ||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus        88 --~~~~-------~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  157 (265)
T 3qxi_A           88 --VVEG-------RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPER  157 (265)
T ss_dssp             --EETT-------TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHH
T ss_pred             --hhhh-------hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHH
Confidence              0000       011 233344 99999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHH
Q 018384          186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (357)
Q Consensus       186 ~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (357)
                      +|.. +++|++||++|+|+||+++||||+|+|++++.+.+..                                      
T Consensus       158 vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------  199 (265)
T 3qxi_A          158 IPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIA--------------------------------------  199 (265)
T ss_dssp             SCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHH--------------------------------------
T ss_pred             hCHHHHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHH--------------------------------------
Confidence            9999 9999999999999999999999999999998754443                                      


Q ss_pred             HHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 018384          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  344 (357)
Q Consensus       265 ~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~  344 (357)
                                                   ++++|++.||.+++.+|++++.....+++++++.|...+...+.   ++|+
T Consensus       200 -----------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~  247 (265)
T 3qxi_A          200 -----------------------------LAEKITANGPLAVAATKRIITESRGWSLDTRFAQQMKILFPIFT---SNDA  247 (265)
T ss_dssp             -----------------------------HHHHHHTSCHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHH---CHHH
T ss_pred             -----------------------------HHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHH
Confidence                                         48999999999999999999999989999999999999999998   9999


Q ss_pred             hhhhhheeccCC
Q 018384          345 YEVSNFQILNKH  356 (357)
Q Consensus       345 ~egi~afl~~r~  356 (357)
                      +||++||++||+
T Consensus       248 ~eg~~af~ekr~  259 (265)
T 3qxi_A          248 KEGAIAFAEKRP  259 (265)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999986

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=4.4e-55  Score=401.05  Aligned_cols=248  Identities=24%  Similarity=0.261  Sum_probs=222.5

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      +.++ +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... ........
T Consensus         2 i~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~~~~   79 (253)
T 1uiy_A            2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTEL-GAEENYRH   79 (253)
T ss_dssp             EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTS-CHHHHHHH
T ss_pred             EEEE-eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccC-CchhHHHH
Confidence            5678 899999999999999999999999999999999999999999999999999999999987643100 11111111


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHH
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (357)
                      ...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +++|++++|.. +++|+
T Consensus        80 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~  158 (253)
T 1uiy_A           80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLL  158 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHH
Confidence            11256788899999999999999999999999999999999999999999999999999999 99999999998 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  274 (357)
                      +||++++|+||+++||||+|+|++++.+.+..                                                
T Consensus       159 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------------  190 (253)
T 1uiy_A          159 LTGRLVEAREAKALGLVNRIAPPGKALEEAKA------------------------------------------------  190 (253)
T ss_dssp             HHCCEEEHHHHHHHTSCSEEECTTCHHHHHHH------------------------------------------------
T ss_pred             HhCCccCHHHHHHCCCcceecChhHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999988754443                                                


Q ss_pred             HHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018384          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  354 (357)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~  354 (357)
                                         ++++|++.||.+++.+|++++.....+++++++.|.+.+...+.   ++|++||+++|++|
T Consensus       191 -------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af~~k  248 (253)
T 1uiy_A          191 -------------------LAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRE---TGDLAEGIRAFFEK  248 (253)
T ss_dssp             -------------------HHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGG---CHHHHHHHHHHHTT
T ss_pred             -------------------HHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhCc
Confidence                               38899999999999999999999888999999999999999887   99999999999998


Q ss_pred             CC
Q 018384          355 KH  356 (357)
Q Consensus       355 r~  356 (357)
                      |+
T Consensus       249 r~  250 (253)
T 1uiy_A          249 RP  250 (253)
T ss_dssp             SC
T ss_pred             CC
Confidence            85

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.7e-56  Score=410.05  Aligned_cols=247  Identities=21%  Similarity=0.200  Sum_probs=193.6

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      .++.+.++++++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.|+.||+|+|++++.........  
T Consensus        10 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~--   87 (258)
T 3lao_A           10 GPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGF--   87 (258)
T ss_dssp             SSCCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBC--
T ss_pred             CCCeEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhH--
Confidence            567799999999999999999999999999999999999999999999999999999999999999998654221111  


Q ss_pred             HHHHHHHHHHHHHHH-hcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          112 CKDFFRTLYSFIYLL-GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i-~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                        .+...+..++.++ .++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        88 --~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  165 (258)
T 3lao_A           88 --RYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTD  165 (258)
T ss_dssp             --CCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHH
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence              1112223445677 899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|++||++++|+||+++|||++|+|++++.+.+..                                           
T Consensus       166 A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-------------------------------------------  202 (258)
T 3lao_A          166 AMRYILTGDEFDADEALRMRLLTEVVEPGEELARALE-------------------------------------------  202 (258)
T ss_dssp             HHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHH-------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999999998754443                                           


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                              ++++|+++||.+++.+|++++.....+++++++.|...+...+.   ++|++||++
T Consensus       203 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~  255 (258)
T 3lao_A          203 ------------------------YAERIARAAPLAVRAALQSAFQGRDEGDDAALSRVNESLAALIG---SEDVREGVL  255 (258)
T ss_dssp             ------------------------HHHHHHHSCHHHHHHHHHHHHHHTC-------------------------------
T ss_pred             ------------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                    38999999999999999999999888999999999999999887   999999999


Q ss_pred             hee
Q 018384          350 FQI  352 (357)
Q Consensus       350 afl  352 (357)
                      ||+
T Consensus       256 AF~  258 (258)
T 3lao_A          256 AMV  258 (258)
T ss_dssp             ---
T ss_pred             hhC
Confidence            996

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=4.2e-55  Score=403.44  Aligned_cols=250  Identities=17%  Similarity=0.179  Sum_probs=225.5

Q ss_pred             CCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ++.+.+++ +++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++ +..... ...+.
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~-~~~~~   85 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMR-ASHEA   85 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHH-HCHHH
T ss_pred             CCeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccc-cchHH
Confidence            34688999 9999999999999 99999999999999999999999999999999999999999999 654211 01122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  165 (264)
T 1wz8_A           86 LLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKA  165 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHH
Confidence            223445667888999999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||++++|+||+++||||+|+|++++.+.+..                                            
T Consensus       166 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------  201 (264)
T 1wz8_A          166 KYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALE--------------------------------------------  201 (264)
T ss_dssp             HHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHH--------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999998887654443                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                             ++++|+..||.+++.+|++++..... ++++++.|...+...+.   ++|++||+++
T Consensus       202 -----------------------~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~---s~d~~eg~~a  254 (264)
T 1wz8_A          202 -----------------------VAERLAQGPKEALHHTKHALNHWYRS-FLPHFELSLALEFLGFS---GKELEEGLKA  254 (264)
T ss_dssp             -----------------------HHHHHHTSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGG---SHHHHHHHHH
T ss_pred             -----------------------HHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence                                   38899999999999999999998888 99999999999988887   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |++||+
T Consensus       255 f~ekr~  260 (264)
T 1wz8_A          255 LKEKRP  260 (264)
T ss_dssp             HHTTSC
T ss_pred             HHccCC
Confidence            999986

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1.2e-55  Score=407.41  Aligned_cols=249  Identities=23%  Similarity=0.303  Sum_probs=220.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++...........
T Consensus         8 ~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   87 (267)
T 3r9t_A            8 APGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDH   87 (267)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTC
T ss_pred             CCcEEEEEECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHH
Confidence            35689999999999999999999999999999999999999999999999999999 69999999999865321111100


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                       ..+.   ...+ ...++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        88 -~~~~---~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  162 (267)
T 3r9t_A           88 -PEWG---FAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVA  162 (267)
T ss_dssp             -GGGC---GGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHH
T ss_pred             -HhHH---HHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHH
Confidence             0010   0111 22489999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||++|+|+||+++||||+|+|++++.+.+..                                            
T Consensus       163 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------  198 (267)
T 3r9t_A          163 MRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALA--------------------------------------------  198 (267)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHH--------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999998754443                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHH---HHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRS---IREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~---l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                             ++++|+.+||.+++.+|++   ++.....+++++++.|...+...+.   ++|++||
T Consensus       199 -----------------------~a~~la~~~p~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg  252 (267)
T 3r9t_A          199 -----------------------LASAITVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLK---SEDAKEG  252 (267)
T ss_dssp             -----------------------HHHHHHTSCHHHHHHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTT---SSHHHHH
T ss_pred             -----------------------HHHHHHhCChHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                   4899999999999999999   9888888999999999999999887   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      ++||++||+
T Consensus       253 ~~AF~ekR~  261 (267)
T 3r9t_A          253 PRAFAEKRE  261 (267)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHcCCC
Confidence            999999986

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=3e-55  Score=405.82  Aligned_cols=250  Identities=20%  Similarity=0.279  Sum_probs=220.9

Q ss_pred             ccCCCceEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCC
Q 018384           30 DDLCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK  108 (357)
Q Consensus        30 ~~~~~~i~~~~~~-~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~  108 (357)
                      ++.++.|.+++++ +|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....  .+
T Consensus         9 ~~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~   85 (272)
T 3qk8_A            9 YQDFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETI--GD   85 (272)
T ss_dssp             GGGCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHH--HC
T ss_pred             CCCCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccc--cc
Confidence            3456789999986 89999999999 99999999999999999999999999999999999999999999986532  12


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      ......+....+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  165 (272)
T 3qk8_A           86 YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGM  165 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence            23334556667788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++|++||++++|+||+++||||+|+|++++.+.+..                                         
T Consensus       166 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~-----------------------------------------  204 (272)
T 3qk8_A          166 AKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATR-----------------------------------------  204 (272)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHH-----------------------------------------
Confidence            9 9999999999999999999999999999888654443                                         


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHhhhcCCCCCh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF---QTFDECLVREYRMSLQGVSRLISGDF  344 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~---~~l~~~l~~e~~~~~~~~~~~~s~d~  344 (357)
                                                ++++|+..||.+++.+|++++....   ..+++.++.|    ...+.   ++|+
T Consensus       205 --------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~---s~d~  251 (272)
T 3qk8_A          205 --------------------------LAENLAQGAQNAIRWTKRSLNHWYRMFGPTFETSLGLE----FLGFT---GPDV  251 (272)
T ss_dssp             --------------------------HHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHTT---SSHH
T ss_pred             --------------------------HHHHHHcCCHHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHhC---CHHH
Confidence                                      4899999999999999999997654   3455555555    34555   9999


Q ss_pred             hhhhhheeccCC
Q 018384          345 YEVSNFQILNKH  356 (357)
Q Consensus       345 ~egi~afl~~r~  356 (357)
                      +||++||++||+
T Consensus       252 ~eg~~Af~ekR~  263 (272)
T 3qk8_A          252 QEGLAAHRQKRP  263 (272)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999986

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=5.3e-56  Score=413.34  Aligned_cols=252  Identities=15%  Similarity=0.175  Sum_probs=220.9

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCC-
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGK-  108 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~-  108 (357)
                      +.++.|.++++++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++........ 
T Consensus         6 ~~~~~i~~~~~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~   84 (287)
T 3gkb_A            6 DAYSTLRVSSEHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQEL   84 (287)
T ss_dssp             -CCSSEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchh
Confidence            34678999999999999999998 7999999999999999999999999999999998 89999999998753210000 


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeC-ceEEecccccccccCCCcHHHHHhhcCh
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPG  187 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g  187 (357)
                      ......+...++.++.++.++||||||+|||+|+|||++|+++||+||+++ +++|++||+++|++|++|++++|++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG  164 (287)
T 3gkb_A           85 AASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVG  164 (287)
T ss_dssp             HHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhC
Confidence            000011123346678889999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 018384          188 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (357)
Q Consensus       188 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (357)
                      .. |++|++||++|+|+||+++||||+|+|++++.+.+.                                         
T Consensus       165 ~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~-----------------------------------------  203 (287)
T 3gkb_A          165 RNRALEVVLTADLFDAETAASYGWINRALPADELDEYVD-----------------------------------------  203 (287)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHH-----------------------------------------
Confidence            99 999999999999999999999999999887765443                                         


Q ss_pred             cCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018384          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (357)
Q Consensus       267 ~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~e  346 (357)
                                                +++++|++.||.+++.+|++++..   .+.++++.|...+...+.   ++|++|
T Consensus       204 --------------------------~lA~~la~~~p~a~~~~K~~l~~~---~~~~~l~~e~~~~~~~~~---s~d~~e  251 (287)
T 3gkb_A          204 --------------------------RVARNIAALPDGVIEAAKRSLPAD---DLKEGLLGENDAWAATFS---LPAAQQ  251 (287)
T ss_dssp             --------------------------HHHHHHHTSCTTHHHHHHHHSCCC---CCHHHHHHHHHHHHHHHT---SHHHHH
T ss_pred             --------------------------HHHHHHHcCCHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhC---CHHHHH
Confidence                                      348999999999999999999874   356999999999999887   999999


Q ss_pred             hhhheeccCC
Q 018384          347 VSNFQILNKH  356 (357)
Q Consensus       347 gi~afl~~r~  356 (357)
                      |++||++||+
T Consensus       252 g~~AF~ekr~  261 (287)
T 3gkb_A          252 LISGGLKDGA  261 (287)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHhcCC
Confidence            9999999985

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=4.5e-55  Score=402.34  Aligned_cols=249  Identities=23%  Similarity=0.327  Sum_probs=222.4

Q ss_pred             CCCceEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCC
Q 018384           32 LCNQVLVEG---KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK  108 (357)
Q Consensus        32 ~~~~i~~~~---~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~  108 (357)
                      +++.+.++.   .++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...    .
T Consensus         2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~   77 (260)
T 1mj3_A            2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR----T   77 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC----C
T ss_pred             CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcc----c
Confidence            345677887   789999999999999999999999999999999999999999999999999999999986431    1


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      ..  ..+...+...+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        78 ~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  155 (260)
T 1mj3_A           78 FQ--DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGK  155 (260)
T ss_dssp             HH--HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCH
T ss_pred             ch--HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence            11  1111222234567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++|++||++++|+||+++||||+|+|++++.+.+.                                          
T Consensus       156 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------  193 (260)
T 1mj3_A          156 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAI------------------------------------------  193 (260)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHH------------------------------------------
Confidence            8 999999999999999999999999999988865433                                          


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                               +++++|+.+||.+++.+|++++.....+++++++.|...+...+.   ++|++||
T Consensus       194 -------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg  245 (260)
T 1mj3_A          194 -------------------------QCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFA---TDDRREG  245 (260)
T ss_dssp             -------------------------HHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGG---SHHHHHH
T ss_pred             -------------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                     348899999999999999999999888999999999999999887   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +++|++||+
T Consensus       246 i~af~~kr~  254 (260)
T 1mj3_A          246 MSAFVEKRK  254 (260)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHcCCC
Confidence            999999885

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=1.2e-54  Score=399.96  Aligned_cols=249  Identities=18%  Similarity=0.205  Sum_probs=210.5

Q ss_pred             CceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhh--ccCChH
Q 018384           34 NQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM--NQGKLE  110 (357)
Q Consensus        34 ~~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~--~~~~~~  110 (357)
                      +.+.++. +++|++||||||++ |+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....  ......
T Consensus         6 ~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   84 (263)
T 3l3s_A            6 DGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRA   84 (263)
T ss_dssp             --CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHH
T ss_pred             cceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHH
Confidence            4455555 88999999999999 9999999999999999999999999999999999999999999875421  112344


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ ++|++++|++++|.. 
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~  163 (263)
T 3l3s_A           85 FVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRRA  163 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCHHH
Confidence            455667778889999999999999999999999999999999999999999999999999999 567899999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|++||++++|+||+++|||++|+|++++.+.+.                                            
T Consensus       164 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  199 (263)
T 3l3s_A          164 VTEMALTGATYDADWALAAGLINRILPEAALATHVA--------------------------------------------  199 (263)
T ss_dssp             HHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999877765443                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                             +++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||++
T Consensus       200 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~Eg~~  253 (263)
T 3l3s_A          200 -----------------------DLAGALAARNQAPLRRGLETLNRHLELPLEQAYALATPVMVEHFM---DPGRRHLDW  253 (263)
T ss_dssp             -----------------------HHHHHHHSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC------------
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                   348999999999999999999999999999999999999999997   999999999


Q ss_pred             heecc
Q 018384          350 FQILN  354 (357)
Q Consensus       350 afl~~  354 (357)
                      ||.+.
T Consensus       254 Af~~~  258 (263)
T 3l3s_A          254 IDEGH  258 (263)
T ss_dssp             -----
T ss_pred             Hhhcc
Confidence            99864

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=8.6e-55  Score=402.92  Aligned_cols=246  Identities=20%  Similarity=0.240  Sum_probs=222.0

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      +++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...    .......+...+
T Consensus        19 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~~~~~~~~~~   94 (272)
T 1hzd_A           19 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM----SSSEVGPFVSKI   94 (272)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS----CHHHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc----ChHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999998 799999999987532    222334455566


Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcCC
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA  198 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~  198 (357)
                      +.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|++||+
T Consensus        95 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~  174 (272)
T 1hzd_A           95 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR  174 (272)
T ss_dssp             HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCC
Confidence            7888999999999999999999999999999999999999999999999999999999999999999998 999999999


Q ss_pred             CCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHHHHHH
Q 018384          199 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS  278 (357)
Q Consensus       199 ~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~  278 (357)
                      +++|+||+++||||+|+|++++.+...                                                     
T Consensus       175 ~~~a~eA~~~GLv~~vv~~~~l~~~~~-----------------------------------------------------  201 (272)
T 1hzd_A          175 VLDGKEAKAVGLISHVLEQNQEGDAAY-----------------------------------------------------  201 (272)
T ss_dssp             EEEHHHHHHHTSCSEEECCCTTSCHHH-----------------------------------------------------
T ss_pred             cCCHHHHHHCCCcceecChhhhhHHHH-----------------------------------------------------
Confidence            999999999999999999988753211                                                     


Q ss_pred             HhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018384          279 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH  356 (357)
Q Consensus       279 l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~r~  356 (357)
                                +++.+++++|+.+||.+++.+|++++.+...+++++++.|...+...+.   ++|++||+++|++||+
T Consensus       202 ----------~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~egi~af~ekr~  266 (272)
T 1hzd_A          202 ----------RKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIP---TKDRLEGLLAFKEKRP  266 (272)
T ss_dssp             ----------HHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTT---CHHHHHHHHHHTTTSC
T ss_pred             ----------HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhcCCC
Confidence                      1223457889999999999999999999888999999999999888887   9999999999999985

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=2.8e-55  Score=402.30  Aligned_cols=244  Identities=21%  Similarity=0.255  Sum_probs=204.3

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.+.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...         
T Consensus         8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~---------   78 (256)
T 3pe8_A            8 SPVLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT---------   78 (256)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC------------
T ss_pred             CCcEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhh---------
Confidence            45789999999999999999999999999999999999999999999999999999999999999886531         


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                          ..+..+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        79 ----~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  154 (256)
T 3pe8_A           79 ----TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLAR  154 (256)
T ss_dssp             ----------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             ----HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHH
Confidence                1112334678899999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|+++|++++|+||+++||||+|+|++++.+.+..                                             
T Consensus       155 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~---------------------------------------------  189 (256)
T 3pe8_A          155 RMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARR---------------------------------------------  189 (256)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHH---------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888754443                                             


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                            ++++|+..||.+++.+|++++.....+++++++.|...+...+....++|++|++++|
T Consensus       190 ----------------------~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~af  247 (256)
T 3pe8_A          190 ----------------------VAASIVGNNQKAVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASV  247 (256)
T ss_dssp             ----------------------HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             ----------------------HHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence                                  3899999999999999999999988899999999999977665444588999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      ++||+
T Consensus       248 lek~k  252 (256)
T 3pe8_A          248 IERGR  252 (256)
T ss_dssp             -----
T ss_pred             HhccC
Confidence            99986

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=1.1e-54  Score=404.83  Aligned_cols=255  Identities=16%  Similarity=0.205  Sum_probs=215.4

Q ss_pred             cccCCCceEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhcc
Q 018384           29 TDDLCNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQ  106 (357)
Q Consensus        29 ~~~~~~~i~~~~~-~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~  106 (357)
                      .+..++.|.++++ ++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... 
T Consensus        22 ~~~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~-  100 (289)
T 3t89_A           22 CSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGG-  100 (289)
T ss_dssp             CCTTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC--------
T ss_pred             cCCCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhcccc-
Confidence            3445678999999 99999999999999999999999999999999999999999999999 59999999998743210 


Q ss_pred             CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcC
Q 018384          107 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  186 (357)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~  186 (357)
                       .......+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++
T Consensus       101 -~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~v  179 (289)
T 3t89_A          101 -YKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIV  179 (289)
T ss_dssp             ----------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHH
T ss_pred             -chhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhc
Confidence             0111111222345678889999999999999999999999999999999999999999999999888887899999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHH
Q 018384          187 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  265 (357)
Q Consensus       187 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (357)
                      |.. |++|++||++|+|+||+++|||++|+|++++.+.+..                                       
T Consensus       180 G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~---------------------------------------  220 (289)
T 3t89_A          180 GQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVR---------------------------------------  220 (289)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHH---------------------------------------
T ss_pred             CHHHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHH---------------------------------------
Confidence            999 9999999999999999999999999999888754443                                       


Q ss_pred             HcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018384          266 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  345 (357)
Q Consensus       266 ~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~  345 (357)
                                                  ++++|+.+||.+++.+|++++.... ...+..+.|.+.+...+.   ++|++
T Consensus       221 ----------------------------~A~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~---s~d~~  268 (289)
T 3t89_A          221 ----------------------------WCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYM---TEEGQ  268 (289)
T ss_dssp             ----------------------------HHHHHHTSCHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTT---SSTTT
T ss_pred             ----------------------------HHHHHHcCCHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHhc---CHHHH
Confidence                                        4899999999999999999998754 234444566666666676   99999


Q ss_pred             hhhhheeccCC
Q 018384          346 EVSNFQILNKH  356 (357)
Q Consensus       346 egi~afl~~r~  356 (357)
                      ||++||++||+
T Consensus       269 Eg~~AF~ekR~  279 (289)
T 3t89_A          269 EGRNAFNQKRQ  279 (289)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHhcCCC
Confidence            99999999986

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=2e-54  Score=398.99  Aligned_cols=247  Identities=16%  Similarity=0.210  Sum_probs=216.5

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.+++++++.| ++++|||||.|++||+|+|++++........  ..
T Consensus         6 ~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--~~   82 (267)
T 3hp0_A            6 YQTIKVRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGR--KQ   82 (267)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTC--CS
T ss_pred             CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChH--HH
Confidence            46799999999999999999999999999999999999999986 5999999999999999999999865321111  11


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +++|++++|.. |+
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~  161 (267)
T 3hp0_A           83 ASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKAH  161 (267)
T ss_dssp             CCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHHHH
Confidence            12234456778889999999999999999999999999999999999999999999999999886 67899999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +|++||++++|+||+++|||++|+|+.+.  ...                                              
T Consensus       162 ellltg~~i~A~eA~~~GLV~~vv~~~~~--~~~----------------------------------------------  193 (267)
T 3hp0_A          162 YMTLMTKPISVQEASEWGLIDAFDAESDV--LLR----------------------------------------------  193 (267)
T ss_dssp             HHHHHCCCBCHHHHHHHTSSSCBCSCTTH--HHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCcceecCCHHH--HHH----------------------------------------------
Confidence            99999999999999999999999986442  122                                              


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  351 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~af  351 (357)
                                           +++++|+++||.+++.+|++++... ..++++++.|.+.+...+.   ++|++||++||
T Consensus       194 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~---s~d~~Eg~~AF  248 (267)
T 3hp0_A          194 ---------------------KHLLRLRRLNKKGIAHYKQFMSSLD-HQVSRAKATALTANQDMFS---DPQNQMGIIRY  248 (267)
T ss_dssp             ---------------------HHHHHHTTSCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTT---STTHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 2378999999999999999999864 4578888889888888887   99999999999


Q ss_pred             eccCC
Q 018384          352 ILNKH  356 (357)
Q Consensus       352 l~~r~  356 (357)
                      ++||+
T Consensus       249 ~ekr~  253 (267)
T 3hp0_A          249 VETGQ  253 (267)
T ss_dssp             TTSCC
T ss_pred             HhcCC
Confidence            99997

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=9.2e-55  Score=403.00  Aligned_cols=251  Identities=17%  Similarity=0.179  Sum_probs=214.0

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEec-----CC-CccccccChHHHHHhhc
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-----SG-RAFCAGGDIVSLYHFMN  105 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g-----~g-~~F~~G~Dl~~~~~~~~  105 (357)
                      .++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||     .| ++||+|+|++++.... 
T Consensus         8 ~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~-   86 (275)
T 4eml_A            8 HYDDILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGG-   86 (275)
T ss_dssp             ECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-------
T ss_pred             CCceEEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhccc-
Confidence            4567999999999999999999999999999999999999999999999999999     88 6999999999875411 


Q ss_pred             cCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhc
Q 018384          106 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  185 (357)
Q Consensus       106 ~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~  185 (357)
                        ..............++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus        87 --~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~  164 (275)
T 4eml_A           87 --YIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARI  164 (275)
T ss_dssp             ----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHH
T ss_pred             --ccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHH
Confidence              000000111124567788999999999999999999999999999999999999999999999999988889999999


Q ss_pred             ChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHH
Q 018384          186 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  264 (357)
Q Consensus       186 ~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (357)
                      +|.. |++|++||++++|+||+++|||++|+|++++.+.+..                                      
T Consensus       165 vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------  206 (275)
T 4eml_A          165 VGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQ--------------------------------------  206 (275)
T ss_dssp             HCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHH--------------------------------------
T ss_pred             hHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHH--------------------------------------
Confidence            9999 9999999999999999999999999999888754443                                      


Q ss_pred             HHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 018384          265 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  344 (357)
Q Consensus       265 ~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~  344 (357)
                                                   ++++|+++||.+++.+|++++.... ......+.|.+.+...+.   |+|+
T Consensus       207 -----------------------------~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~---s~d~  253 (275)
T 4eml_A          207 -----------------------------WAKEILSKSPLAIRCLKAAFNADCD-GQAGLQELAGNATLLYYM---TEEG  253 (275)
T ss_dssp             -----------------------------HHHHHHTSCHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHT---SHHH
T ss_pred             -----------------------------HHHHHHhCCHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHhc---CHHH
Confidence                                         4899999999999999999998754 244444566666667776   9999


Q ss_pred             hhhhhheeccCC
Q 018384          345 YEVSNFQILNKH  356 (357)
Q Consensus       345 ~egi~afl~~r~  356 (357)
                      +||++||++||+
T Consensus       254 ~eg~~AF~ekR~  265 (275)
T 4eml_A          254 SEGKQAFLEKRP  265 (275)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999986

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=5.6e-55  Score=401.34  Aligned_cols=248  Identities=20%  Similarity=0.276  Sum_probs=209.9

Q ss_pred             CCCCCCcccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHH
Q 018384           23 RTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYH  102 (357)
Q Consensus        23 ~~~~~~~~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~  102 (357)
                      .++..+.+.++..|.++++++|++||||||++.|+||.+|+.+|.+++++++.| ++++|||||.|++||+|+|++... 
T Consensus        10 ~~~~~~~~~~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~-   87 (264)
T 3he2_A           10 GTLEAQTQGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA-   87 (264)
T ss_dssp             ------------CEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT-
T ss_pred             cccccccCCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch-
Confidence            344566677788899999999999999999999999999999999999999988 999999999999999999997311 


Q ss_pred             hhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHH
Q 018384          103 FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYL  182 (357)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l  182 (357)
                           ..   ..+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|
T Consensus        88 -----~~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L  159 (264)
T 3he2_A           88 -----FA---ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRL  159 (264)
T ss_dssp             -----TG---GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHH
T ss_pred             -----hh---HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHH
Confidence                 11   1234455678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHH
Q 018384          183 SHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (357)
Q Consensus       183 ~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (357)
                      ++++|.. +++|++||++|+|+||+++||||+|++   +. .+.                                    
T Consensus       160 ~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~~---~~-~a~------------------------------------  199 (264)
T 3he2_A          160 SSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT---LA-DAQ------------------------------------  199 (264)
T ss_dssp             HHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC---HH-HHH------------------------------------
T ss_pred             HHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEec---HH-HHH------------------------------------
Confidence            9999999 999999999999999999999999986   22 122                                    


Q ss_pred             HHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCC
Q 018384          262 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  341 (357)
Q Consensus       262 ~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s  341 (357)
                                                     +++++|++.||.+++.+|++++..  .+++++++.|...+...+.   +
T Consensus       200 -------------------------------~~A~~la~~~p~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~---s  243 (264)
T 3he2_A          200 -------------------------------AWAAEIARLAPLAIQHAKRVLNDD--GAIEEAWPAHKELFDKAWG---S  243 (264)
T ss_dssp             -------------------------------HHHHHHHTSCHHHHHHHHHHHHTS--SCSCCCCHHHHHHHHHHHT---S
T ss_pred             -------------------------------HHHHHHHcCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhC---C
Confidence                                           348899999999999999999986  3466777888888888887   9


Q ss_pred             CChhhhhhheeccCC
Q 018384          342 GDFYEVSNFQILNKH  356 (357)
Q Consensus       342 ~d~~egi~afl~~r~  356 (357)
                      +|++||++||++||+
T Consensus       244 ~d~~Eg~~AF~ekR~  258 (264)
T 3he2_A          244 QDVIEAQVARMEKRP  258 (264)
T ss_dssp             HHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhcCCC
Confidence            999999999999986

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=1.7e-54  Score=401.21  Aligned_cols=251  Identities=19%  Similarity=0.215  Sum_probs=217.1

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCC-ccccccChHHHHHhhccCCh
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      ..++.+.++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|+ +||+|+|++++...... ..
T Consensus        10 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~-~~   88 (273)
T 2uzf_A           10 REYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYV-GE   88 (273)
T ss_dssp             BCCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC---------CC
T ss_pred             CCCceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccc-hh
Confidence            34567899999999999999999999999999999999999999999999999999998 99999999987431100 00


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH
Q 018384          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (357)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (357)
                      ....  ...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        89 ~~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  166 (273)
T 2uzf_A           89 DQIP--RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK  166 (273)
T ss_dssp             SSSC--CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHH
T ss_pred             hhHH--HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHH
Confidence            0000  00134566788899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       190 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                       +++|++||+.++|+||+++||||+|+|++++.+.+..                                          
T Consensus       167 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~------------------------------------------  204 (273)
T 2uzf_A          167 KAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQ------------------------------------------  204 (273)
T ss_dssp             HHHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHH------------------------------------------
T ss_pred             HHHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHH------------------------------------------
Confidence             9999999999999999999999999998888654433                                          


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHH-HHHHHhhhcCCCCChhhh
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREY-RMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~-~~~~~~~~~~~s~d~~eg  347 (357)
                                               ++++|++.||.+++.+|++++  ...+++++++.|. ..+...+.   ++|++||
T Consensus       205 -------------------------~a~~la~~~~~a~~~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~---s~d~~eg  254 (273)
T 2uzf_A          205 -------------------------WCKEIMKHSPTALRFLKAAMN--ADTDGLAGLQQMAGDATLLYYT---TDEAKEG  254 (273)
T ss_dssp             -------------------------HHHHHTTSCHHHHHHHHHHHH--HHHSHHHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             -------------------------HHHHHHhCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHhc---ChHHHHH
Confidence                                     388999999999999999998  3457899999998 88888887   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +++|++||+
T Consensus       255 i~af~ekr~  263 (273)
T 2uzf_A          255 RDAFKEKRD  263 (273)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHhcCC
Confidence            999999985

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=5e-55  Score=402.38  Aligned_cols=248  Identities=19%  Similarity=0.193  Sum_probs=221.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEec-CC-CccccccChHHHHHhhccCChH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKG-SG-RAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g-~g-~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      ++.+.++++++|++||||||++.|+||.+|+.+|.+++++++.|+ +++||||| .| ++||+|+|++++...... .. 
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~-~~-   79 (261)
T 1ef8_A            3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRD-PL-   79 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----C-TT-
T ss_pred             cceEEEEEeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCch-hH-
Confidence            467899999999999999999999999999999999999999999 99999999 99 999999999886542111 11 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                         .+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        80 ---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  156 (261)
T 1ef8_A           80 ---SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI  156 (261)
T ss_dssp             ---CTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred             ---HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHH
Confidence               1112346678889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|++||+.++|+||+++||||+|+|++++.+.+.                                            
T Consensus       157 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  192 (261)
T 1ef8_A          157 VKELIFTASPITAQRALAVGILNHVVEVEELEDFTL--------------------------------------------  192 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999877754333                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHH--HhhhcCCCCChhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL--QGVSRLISGDFYEV  347 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~--~~~~~~~s~d~~eg  347 (357)
                                             +++++|+..||.+++.+|++++.....+++++++.|...+.  ..+.   ++|++||
T Consensus       193 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---s~d~~eg  246 (261)
T 1ef8_A          193 -----------------------QMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYD---SEDYQEG  246 (261)
T ss_dssp             -----------------------HHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhc---CHHHHHH
Confidence                                   23889999999999999999999888889999999999988  8887   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +++|++||+
T Consensus       247 ~~af~ekr~  255 (261)
T 1ef8_A          247 MNAFLEKRK  255 (261)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHccCC
Confidence            999999985

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=1.7e-54  Score=410.10  Aligned_cols=253  Identities=15%  Similarity=0.183  Sum_probs=190.0

Q ss_pred             CCceEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCC-------ccccccChHHHHHh
Q 018384           33 CNQVLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-------AFCAGGDIVSLYHF  103 (357)
Q Consensus        33 ~~~i~~~~~--~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~-------~F~~G~Dl~~~~~~  103 (357)
                      ++.|.++++  ++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|+       +||+|+|++++...
T Consensus        54 ~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~  133 (334)
T 3t8b_A           54 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS  133 (334)
T ss_dssp             CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred             CceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence            567899986  999999999999999999999999999999999999999999999995       89999999876421


Q ss_pred             hc---cCC----hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEe-CceEEecccccccccCC
Q 018384          104 MN---QGK----LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPD  175 (357)
Q Consensus       104 ~~---~~~----~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~  175 (357)
                      ..   ...    ..........+..++..|.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~  213 (334)
T 3t8b_A          134 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDG  213 (334)
T ss_dssp             --------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSC
T ss_pred             cccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCc
Confidence            10   000    00111112234567788999999999999999999999999999999999 99999999999999999


Q ss_pred             CcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChh
Q 018384          176 AGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKN  254 (357)
Q Consensus       176 ~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (357)
                      +|++++|+|++|.. |++|++||++|+|+||+++|||++|||++++.+.+.+                            
T Consensus       214 ~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~----------------------------  265 (334)
T 3t8b_A          214 GYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQ----------------------------  265 (334)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHH----------------------------
T ss_pred             ccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHH----------------------------
Confidence            99999999999999 9999999999999999999999999999888754443                            


Q ss_pred             hHHHHHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 018384          255 SVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQ  334 (357)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~  334 (357)
                                                             ++++|+.+||.+++.+|++++.... .+.+.+..|.+.+..
T Consensus       266 ---------------------------------------~A~~ia~~~p~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~  305 (334)
T 3t8b_A          266 ---------------------------------------WAAEINAKSPQAQRMLKFAFNLLDD-GLVGQQLFAGEATRL  305 (334)
T ss_dssp             ---------------------------------------HHHHHHTSCHHHHHHHHHHHHHTCC-CC-------------
T ss_pred             ---------------------------------------HHHHHHhCCHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHH
Confidence                                                   3899999999999999999998754 455556667676666


Q ss_pred             hhhcCCCCChhhhhhheeccCC
Q 018384          335 GVSRLISGDFYEVSNFQILNKH  356 (357)
Q Consensus       335 ~~~~~~s~d~~egi~afl~~r~  356 (357)
                      .+.   ++|++||++||++||+
T Consensus       306 ~~~---s~d~~Eg~~AFleKR~  324 (334)
T 3t8b_A          306 AYM---TDEAVEGRDAFLQKRP  324 (334)
T ss_dssp             ----------------------
T ss_pred             Hhc---CHHHHHHHHHHHcCCC
Confidence            666   9999999999999986

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=2.6e-54  Score=397.29  Aligned_cols=247  Identities=15%  Similarity=0.140  Sum_probs=218.5

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecC-CCccccccChHHHHHhhccCChHHHH
Q 018384           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-GRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        35 ~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      .+.++.+++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||. |++||+|+|++++...    +.....
T Consensus         6 ~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~----~~~~~~   80 (260)
T 1sg4_A            6 LVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGR----SPAHYA   80 (260)
T ss_dssp             EEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSC----CHHHHH
T ss_pred             EEEEEecCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhcc----CHHHHH
Confidence            3566778999999999997 799999999999999999999999999999999 6999999999986421    223334


Q ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEe--CceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          114 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC--GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~--~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      .+...++.++.++.++||||||+|||+|+|||++|+++||+||++  ++++|++||+++|++|++|++++|++++|.. +
T Consensus        81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  160 (260)
T 1sg4_A           81 GYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA  160 (260)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHH
Confidence            455667788899999999999999999999999999999999999  8999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      ++|++||++++|+||+++||||+|+|++++.+.+..                                            
T Consensus       161 ~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------  196 (260)
T 1sg4_A          161 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALS--------------------------------------------  196 (260)
T ss_dssp             HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHH--------------------------------------------
T ss_pred             HHHHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999998888654433                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                             ++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++
T Consensus       197 -----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a  250 (260)
T 1sg4_A          197 -----------------------AIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFIS---KDSIQKSLQM  250 (260)
T ss_dssp             -----------------------HHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT---SHHHHHHHTC
T ss_pred             -----------------------HHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                   38899999999999999999988877889999999999999887   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+++|+
T Consensus       251 f~ekr~  256 (260)
T 1sg4_A          251 YLERLK  256 (260)
T ss_dssp             ------
T ss_pred             HHHhhc
Confidence            999985

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=2.4e-54  Score=402.57  Aligned_cols=250  Identities=15%  Similarity=0.109  Sum_probs=221.6

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCC-ccccccChHHHHHhhccCCh
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      ..++.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|+ +||+|+|++++....... .
T Consensus         5 ~~~~~v~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~-~   82 (289)
T 3h0u_A            5 ASYETIKARLDGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEA-A   82 (289)
T ss_dssp             CCCSSEEEEEETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHH-H
T ss_pred             CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcch-h
Confidence            45678999999999999999998 79999999999999999999999999999999995 556677999876531100 0


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCCCcHHHHHhhcChH
Q 018384          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                      .....+...++.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|.
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  162 (289)
T 3h0u_A           83 KAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGR  162 (289)
T ss_dssp             TTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCH
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCH
Confidence            000022334567888999999999999999999999999999999999998 9999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . |++|++||++|+|+||+++|||++|+|++++.+.+.                                          
T Consensus       163 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~------------------------------------------  200 (289)
T 3h0u_A          163 GRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVA------------------------------------------  200 (289)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999887765443                                          


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                               +++++|++.||.+++.+|++++.... +++++++.|...+...+.   ++|++||
T Consensus       201 -------------------------~lA~~la~~~p~a~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~---s~d~~eg  251 (289)
T 3h0u_A          201 -------------------------GIAARMSGFPRDALIAAKSAINAISL-PAPAEVRADAALFQQLVR---GEKVQQR  251 (289)
T ss_dssp             -------------------------HHHHHHHTSCHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTT---SHHHHHH
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                     34899999999999999999999887 899999999999999887   9999999


Q ss_pred             hhheec
Q 018384          348 SNFQIL  353 (357)
Q Consensus       348 i~afl~  353 (357)
                      ++||++
T Consensus       252 i~AFle  257 (289)
T 3h0u_A          252 TAELFK  257 (289)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999998

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=6.7e-53  Score=390.35  Aligned_cols=236  Identities=21%  Similarity=0.259  Sum_probs=216.5

Q ss_pred             ccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCCh
Q 018384           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL  109 (357)
Q Consensus        30 ~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~  109 (357)
                      ..|++.|.++++++|++||||||++ |+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...    ..
T Consensus        20 ~~m~~~v~~~~~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----~~   94 (277)
T 4di1_A           20 GSMNEFVSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTL----NA   94 (277)
T ss_dssp             ---CCSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTC----CH
T ss_pred             CCCCceEEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCccccccc----Ch
Confidence            4566789999999999999999998 999999999999999999999999999999999999999999998642    23


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH
Q 018384          110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (357)
Q Consensus       110 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (357)
                      .....+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~  174 (277)
T 4di1_A           95 PEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSS  174 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHH
Confidence            44455666778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       190 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                       +++|++||++|+|+||+++||||+|+|++++.+.+..                                          
T Consensus       175 ~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~------------------------------------------  212 (277)
T 4di1_A          175 RAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVA------------------------------------------  212 (277)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHH------------------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHH------------------------------------------
Confidence             9999999999999999999999999999888654443                                          


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  337 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~  337 (357)
                                               ++++|+..||.+++.+|++++.....+++++++.|...+...+.
T Consensus       213 -------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~  256 (277)
T 4di1_A          213 -------------------------WARRYLECPPRALAAAKAVINDVFELEATERAAAERRRYVELFA  256 (277)
T ss_dssp             -------------------------HHHTTTTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTS
T ss_pred             -------------------------HHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence                                     38899999999999999999999999999999999999988876

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=1.5e-53  Score=388.38  Aligned_cols=239  Identities=18%  Similarity=0.221  Sum_probs=215.9

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHH
Q 018384           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKD  114 (357)
Q Consensus        35 ~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (357)
                      ...++++++|++||||||++.|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++..... ...     
T Consensus         4 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~-----   77 (243)
T 2q35_A            4 VQLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTR-GEV-----   77 (243)
T ss_dssp             EEEEEEETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHT-TCC-----
T ss_pred             eEEEEeeCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccc-hhh-----
Confidence            45678899999999999999999999999999999999999999999999999999999999998754321 111     


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHH
Q 018384          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (357)
Q Consensus       115 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (357)
                         ..+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus        78 ---~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  154 (243)
T 2q35_A           78 ---EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEM  154 (243)
T ss_dssp             ---CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             ---HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHH
Confidence               113466788999999999999999999999999999999999999999999999999999999999999998 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHH
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  273 (357)
                      ++||++++|+||+++||||+++|++++.+.+.                                                
T Consensus       155 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------------  186 (243)
T 2q35_A          155 IYTGENYRGKELAERGIPFPVVSRQDVLNYAQ------------------------------------------------  186 (243)
T ss_dssp             HHHCCCEEHHHHHHTTCSSCEECHHHHHHHHH------------------------------------------------
T ss_pred             HHcCCCCCHHHHHHcCCCCEecChhHHHHHHH------------------------------------------------
Confidence            99999999999999999999999877764433                                                


Q ss_pred             HHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                                         +++++|+..||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|.
T Consensus       187 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a~~  243 (243)
T 2q35_A          187 -------------------QLGQKIAKSPRLSLVALKQHLSADIKAKFPEAIKKELEIHQVTFN---QPEIASRIQQEF  243 (243)
T ss_dssp             -------------------HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---STTHHHHHHTTC
T ss_pred             -------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhC---CHHHHHHHhhcC
Confidence                               348899999999999999999998877899999999999988887   999999999874

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=1.9e-52  Score=383.48  Aligned_cols=236  Identities=14%  Similarity=0.160  Sum_probs=207.9

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      |.++++++|++||||||++.|++|.+|+.+|.++++.++. +++++|||||.|++||+|+|++++...    ........
T Consensus         9 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~~~~~   83 (254)
T 3isa_A            9 LAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQ----SEGDLLLR   83 (254)
T ss_dssp             EEEEECSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTS----CHHHHHHH
T ss_pred             EEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhcc----CchhHHHH
Confidence            8999999999999999999999999999999999999987 589999999999999999999987532    22222333


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHH
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (357)
                      +..++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|   ++++|++++|.. +++|+
T Consensus        84 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~  160 (254)
T 3isa_A           84 MVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSIL  160 (254)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHH
Confidence            44567788999999999999999999999999999999999999999999999999998   378999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  274 (357)
                      +||++++|+||+++||||+|+|++++.+.+..                                                
T Consensus       161 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~------------------------------------------------  192 (254)
T 3isa_A          161 GSARAFDADEARRIGFVRDCAAQAQWPALIDA------------------------------------------------  192 (254)
T ss_dssp             TTTCEEEHHHHHHTTSSSEECCGGGHHHHHHH------------------------------------------------
T ss_pred             HhCCCCcHHHHHHCCCccEEeChhHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999888765443                                                


Q ss_pred             HHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018384          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  354 (357)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~  354 (357)
                                         +++++++.||.+++.+|++++.       +.++.|...+...+.   ++|++||+++|++|
T Consensus       193 -------------------~a~~la~~~~~a~~~~K~~l~~-------~~~~~e~~~~~~~~~---s~d~~egi~af~ek  243 (254)
T 3isa_A          193 -------------------AAEAATALDPATRATLHRVLRD-------DHDDADLAALARSAA---QPGFKARIRDYLAQ  243 (254)
T ss_dssp             -------------------HHHHHTTSCHHHHHHHHHHHSC-------CCHHHHHHHHHHHHH---STTHHHHHHHHHHC
T ss_pred             -------------------HHHHHHcCCHHHHHHHHHHHhh-------hhHHHHHHHHHHHhC---CHHHHHHHHHHHhc
Confidence                               3889999999999999999843       233457777777787   99999999999999


Q ss_pred             CC
Q 018384          355 KH  356 (357)
Q Consensus       355 r~  356 (357)
                      |+
T Consensus       244 r~  245 (254)
T 3isa_A          244 PA  245 (254)
T ss_dssp             --
T ss_pred             CC
Confidence            86

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=6.1e-52  Score=385.46  Aligned_cols=255  Identities=15%  Similarity=0.086  Sum_probs=207.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCC---h
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK---L  109 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~---~  109 (357)
                      ++.+.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++........   .
T Consensus         8 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~   87 (280)
T 1pjh_A            8 NEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP   87 (280)
T ss_dssp             BTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCS
T ss_pred             CCceEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchh
Confidence            4679999999999999999999999999999999999999999999999999999999999999998753211110   0


Q ss_pred             H----HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEe-CceEEecccccccccCCCcHHHHHhh
Q 018384          110 E----ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSH  184 (357)
Q Consensus       110 ~----~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r  184 (357)
                      .    ....++...+.++..+.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|++|++++|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r  167 (280)
T 1pjh_A           88 SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPL  167 (280)
T ss_dssp             SHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHH
Confidence            1    111223334577889999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             cChHH-HHHHHhcCCCCCHHHHHHcCccceecCCC-----ChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHH
Q 018384          185 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSE-----KLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIH  258 (357)
Q Consensus       185 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~-----~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (357)
                      ++|.. |++|++||++|+|+||+++|||++|+|++     ++.+.+.                                 
T Consensus       168 ~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~---------------------------------  214 (280)
T 1pjh_A          168 KFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVL---------------------------------  214 (280)
T ss_dssp             HHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHH---------------------------------
T ss_pred             HhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHH---------------------------------
Confidence            99998 99999999999999999999999999986     3432110                                 


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhc
Q 018384          259 RIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSR  338 (357)
Q Consensus       259 ~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~  338 (357)
                                                       .+++++|+..||.+++.+|++++......++.....|.......+. 
T Consensus       215 ---------------------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~d~~e~~~af~-  260 (280)
T 1pjh_A          215 ---------------------------------EELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWV-  260 (280)
T ss_dssp             ---------------------------------HHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ---------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHh-
Confidence                                             0248899999999999999999987655566555555555555554 


Q ss_pred             CCCCChhhhhhheeccCC
Q 018384          339 LISGDFYEVSNFQILNKH  356 (357)
Q Consensus       339 ~~s~d~~egi~afl~~r~  356 (357)
                        +++..|+.++|+++|+
T Consensus       261 --~kr~~e~~~~f~~~~~  276 (280)
T 1pjh_A          261 --DGEPLKRFRQLGSKQR  276 (280)
T ss_dssp             --HTHHHHHHTC------
T ss_pred             --CCccHHHHHHHHhccc
Confidence              5666667777776653

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=7e-52  Score=380.97  Aligned_cols=246  Identities=16%  Similarity=0.126  Sum_probs=214.8

Q ss_pred             CCCcccCCCceEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhh
Q 018384           26 SSVTDDLCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFM  104 (357)
Q Consensus        26 ~~~~~~~~~~i~~~~~~-~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~  104 (357)
                      .......++.+.+++++ +|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++... 
T Consensus        15 ~~~~~~~~~~i~~~~~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~-   93 (263)
T 2j5g_A           15 QPEYFTKYENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDV-   93 (263)
T ss_dssp             CCGGGGSCTTEEEEECTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCT-
T ss_pred             cccccCCCCeEEEEEcCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhcc-
Confidence            34455567789999999 9999999999999999999999999999999999999999999999999999999986431 


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEec-ccccccccCCCcHHHHHh
Q 018384          105 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT-PETLIGFHPDAGASFYLS  183 (357)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~l~  183 (357)
                        .+......+...+..++.++.++||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++|+
T Consensus        94 --~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~  170 (263)
T 2j5g_A           94 --TNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWP  170 (263)
T ss_dssp             --TSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHH
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHH
Confidence              122223334455667888999999999999999999 5999999999999999999999 999999999999999999


Q ss_pred             hcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHH
Q 018384          184 HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDI  262 (357)
Q Consensus       184 r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (357)
                      +++|.. +++|++||++++|+||+++|||++|+|++++.+.+..                                    
T Consensus       171 r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~------------------------------------  214 (263)
T 2j5g_A          171 LALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWE------------------------------------  214 (263)
T ss_dssp             HHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHH------------------------------------
T ss_pred             HHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHH------------------------------------
Confidence            999998 9999999999999999999999999998888654433                                    


Q ss_pred             HHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCC
Q 018384          263 VDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISG  342 (357)
Q Consensus       263 ~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~  342 (357)
                                                     ++++|+..||.+++.+|++++.....+++++++.|.             
T Consensus       215 -------------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~-------------  250 (263)
T 2j5g_A          215 -------------------------------IARTLAKQPTLNLRYTRVALTQRLKRLVNEGIGYGL-------------  250 (263)
T ss_dssp             -------------------------------HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             -------------------------------HHHHHHhCCHHHHHHHHHHHHhhhhccHHHHHHHHH-------------
Confidence                                           388999999999999999999877666776665543             


Q ss_pred             ChhhhhhheeccCC
Q 018384          343 DFYEVSNFQILNKH  356 (357)
Q Consensus       343 d~~egi~afl~~r~  356 (357)
                       ..|||+||+.+|.
T Consensus       251 -~~eg~~af~~~~~  263 (263)
T 2j5g_A          251 -ALEGITATDLRNT  263 (263)
T ss_dssp             -HHHHHHHHHTTC-
T ss_pred             -HHhhHHHHHhccC
Confidence             4699999998873

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=2e-51  Score=371.99  Aligned_cols=228  Identities=20%  Similarity=0.170  Sum_probs=205.8

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      |++.+.++++++|++||||||+ .|++|.+|+.+|.+++++++.| ++++|||||.|++||+|+|++++...    +...
T Consensus         3 M~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~   76 (233)
T 3r6h_A            3 MSGPVTYTHDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSG----EAKP   76 (233)
T ss_dssp             --CCEEEEEETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC-------CHH
T ss_pred             CCCceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhcc----ChHH
Confidence            4567999999999999999995 7999999999999999999987 58999999999999999999998642    2334


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...+....+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a  156 (233)
T 3r6h_A           77 AIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAY  156 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHH
Confidence            456667778899999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      +++++||++++|+||+++|||++|+|++++.+.+.+                                            
T Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~--------------------------------------------  192 (233)
T 3r6h_A          157 QQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEE--------------------------------------------  192 (233)
T ss_dssp             HHHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHH--------------------------------------------
T ss_pred             HHHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999888754443                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS  332 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~  332 (357)
                                             ++++|++.||.+++.+|+++++....+++++++.|...+
T Consensus       193 -----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          193 -----------------------AAREFAGLNQQAHNATKLRARAEALKAIRAGIDGIEAEF  231 (233)
T ss_dssp             -----------------------HHHHHHTSCHHHHHHHHHHTTHHHHHHHHHHHHTSHHHH
T ss_pred             -----------------------HHHHHHcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence                                   389999999999999999999998889999999887765

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=1.2e-50  Score=380.47  Aligned_cols=252  Identities=13%  Similarity=0.160  Sum_probs=217.8

Q ss_pred             CCCceEE--EEeCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHHc-----CCCceEEEEecCCCccccccChHHH
Q 018384           32 LCNQVLV--EGKANSRMAILNRPSA----LNALNTNMGAKLNKLFKAWEN-----DPNIGFVSMKGSGRAFCAGGDIVSL  100 (357)
Q Consensus        32 ~~~~i~~--~~~~~v~~I~ln~p~~----~Nal~~~~~~~L~~~l~~~~~-----d~~v~~vvl~g~g~~F~~G~Dl~~~  100 (357)
                      .++.+.+  +++++|++||||||+|    +|+||.+|+.+|.++|++++.     |+++++|||||.|++||+|+|++++
T Consensus        28 ~y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~  107 (305)
T 3m6n_A           28 IGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALF  107 (305)
T ss_dssp             -CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHH
T ss_pred             CCceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHH
Confidence            3555555  6679999999999998    559999999999999999987     5899999999999999999999998


Q ss_pred             HHhhccCChHHHHHHHHHHHHHHHHH---hcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCc
Q 018384          101 YHFMNQGKLEECKDFFRTLYSFIYLL---GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAG  177 (357)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~i---~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g  177 (357)
                      ..............+...+...+..+   ..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g  187 (305)
T 3m6n_A          108 CQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG  187 (305)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred             HhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence            75432233333444444444455444   568999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhH
Q 018384          178 ASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSV  256 (357)
Q Consensus       178 ~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (357)
                      ++++|++++|.. +++|++||++|+|+||+++|||++|+|++++.+.+..+                             
T Consensus       188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------  238 (305)
T 3m6n_A          188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQV-----------------------------  238 (305)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHH-----------------------------
T ss_pred             HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHH-----------------------------
Confidence            999999999999 99999999999999999999999999999987654433                             


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhh
Q 018384          257 IHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGV  336 (357)
Q Consensus       257 ~~~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~  336 (357)
                                                            +++|++ +|.+++.+|++++.....+++++++.|...+...+
T Consensus       239 --------------------------------------a~~la~-~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~  279 (305)
T 3m6n_A          239 --------------------------------------IRESKR-TPHAWAAMQQVREMTTAVPLEEMMRITEIWVDTAM  279 (305)
T ss_dssp             --------------------------------------HHHHTT-CHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHT
T ss_pred             --------------------------------------HHHHhh-ChHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Confidence                                                  788886 89999999999999999999999999999999999


Q ss_pred             hcCCCCChhhhhhheecc
Q 018384          337 SRLISGDFYEVSNFQILN  354 (357)
Q Consensus       337 ~~~~s~d~~egi~afl~~  354 (357)
                      .   ++|....+.+.+..
T Consensus       280 ~---s~d~~~~~m~~l~~  294 (305)
T 3m6n_A          280 Q---LGEKSLRTMDRLVR  294 (305)
T ss_dssp             T---CCHHHHHHHHHHHH
T ss_pred             c---CchHHHHHHHHHHH
Confidence            8   99998887766543

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=6.7e-51  Score=368.34  Aligned_cols=226  Identities=15%  Similarity=0.146  Sum_probs=205.2

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      |++.+.++++++|++||||||+ .|++|.+|+.+|.+++++++.|+  ++|||||.|++||+|+|++++..     ....
T Consensus         4 M~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~--~~vvltg~g~~F~aG~Dl~~~~~-----~~~~   75 (232)
T 3ot6_A            4 MSDLVSYHLDDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDR--AIVIVTGQPGILSGGYDLKVMTS-----SAEA   75 (232)
T ss_dssp             HHHHEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHTT--CEEEEECBTEEEECCBCHHHHHH-----CHHH
T ss_pred             cccceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCC--CEEEEECCCCCccCCcCHHHHhh-----ChHH
Confidence            3457899999999999999996 69999999999999999999874  89999999999999999999864     1333


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      ...+....+.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|+++++++++|.. 
T Consensus        76 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~  155 (232)
T 3ot6_A           76 AINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSA  155 (232)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHH
Confidence            4556677788999999999999999999999999999999999999998 89999999999998888888999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      ++++++||++++|+||+++|||++|+|++++.+.+.+                                           
T Consensus       156 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~-------------------------------------------  192 (232)
T 3ot6_A          156 FNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALA-------------------------------------------  192 (232)
T ss_dssp             HHHHHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHH-------------------------------------------
T ss_pred             HHHHHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999999998765443                                           


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS  332 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~  332 (357)
                                              ++++|++.||.+++.+|++++.....+++++++.|.+.+
T Consensus       193 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          193 ------------------------VAAQLKKINMNAHKKTKLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             ------------------------HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ------------------------HHHHHHcCCHHHHHHHHHHHHHHhHhHHHHHHHHHHHhc
Confidence                                    389999999999999999999998889999999998753

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=7.7e-51  Score=386.34  Aligned_cols=253  Identities=18%  Similarity=0.182  Sum_probs=205.2

Q ss_pred             CCcccCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhcc
Q 018384           27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ  106 (357)
Q Consensus        27 ~~~~~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~  106 (357)
                      +..+..++.|.++++++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++......
T Consensus        28 ~~~~~~~~~i~~e~~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~  107 (333)
T 3njd_A           28 PVDFDNLKTMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSS  107 (333)
T ss_dssp             -CCTTSCSSEEEEEETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC----------
T ss_pred             CCCCCCCCeEEEEEECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhcccc
Confidence            33445678899999999999999999999999999999999999999999999999999999999999999987543211


Q ss_pred             CC--------------------------hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc
Q 018384          107 GK--------------------------LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK  160 (357)
Q Consensus       107 ~~--------------------------~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~  160 (357)
                      ..                          ......+...+..++..|.++||||||+|||+|+|||++|+++||+||++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~  187 (333)
T 3njd_A          108 AGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAAD  187 (333)
T ss_dssp             -----CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTT
T ss_pred             cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCC
Confidence            00                          0012244556677888999999999999999999999999999999999999


Q ss_pred             eEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHH
Q 018384          161 TVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIE  239 (357)
Q Consensus       161 a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~  239 (357)
                      ++|++||+++|++|++|   +|++++|.. |++|++||+.|+|+||+++||||+|||++++.+.+..             
T Consensus       188 a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~-------------  251 (333)
T 3njd_A          188 AKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTER-------------  251 (333)
T ss_dssp             CEEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHH-------------
T ss_pred             CeeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHH-------------
Confidence            99999999999999886   478999999 9999999999999999999999999999888754443             


Q ss_pred             HHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcC
Q 018384          240 ACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ  319 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~  319 (357)
                                                                            ++++|+..||.+++.+|++++.....
T Consensus       252 ------------------------------------------------------lA~~ia~~~~~al~~~K~~l~~~~~~  277 (333)
T 3njd_A          252 ------------------------------------------------------LVERIAAMPVNQLIMAKLACNTALLN  277 (333)
T ss_dssp             ------------------------------------------------------HHHHHHTSCHHHHHHHHHHHHHHHHT
T ss_pred             ------------------------------------------------------HHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence                                                                  38999999999999999999988653


Q ss_pred             -CHHHH--HHH----------HHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018384          320 -TFDEC--LVR----------EYRMSLQGVSRLISGDFYEVSNFQILNKH  356 (357)
Q Consensus       320 -~l~~~--l~~----------e~~~~~~~~~~~~s~d~~egi~afl~~r~  356 (357)
                       ++...  +..          |...|...       ...||+++|++||+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~e~~~f~~~-------~~~~g~~a~~ekR~  320 (333)
T 3njd_A          278 QGVATSQMVSTVFDGIARHTPEGHAFVAT-------AREHGFREAVRRRD  320 (333)
T ss_dssp             TTHHHHHHHHHHHHHHHTTSHHHHHHHHH-------HHHHCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhcChHHHHHHHH-------hhhHHHHHHHHhcC
Confidence             45443  211          22222221       23799999998875

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=5.1e-50  Score=372.10  Aligned_cols=247  Identities=17%  Similarity=0.210  Sum_probs=203.3

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      .+++.+.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..........
T Consensus        17 ~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~   96 (279)
T 3t3w_A           17 RTEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLE   96 (279)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHH
T ss_pred             ccCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999876532111111


Q ss_pred             -HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH
Q 018384          111 -ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  189 (357)
Q Consensus       111 -~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (357)
                       ........+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ ++++..+ ++++|..
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~-~~~~~~~-~~~vG~~  174 (279)
T 3t3w_A           97 FIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIG-GVEYHGH-TWELGPR  174 (279)
T ss_dssp             HHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCS-SCSSCCH-HHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCC-CchHHHH-HhhcCHH
Confidence             122223445667889999999999999999999999999999999999999999999999994 4444443 8999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       190 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                       +++|++||++++|+||+++|||++|+|++++.+.+.+                                          
T Consensus       175 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~------------------------------------------  212 (279)
T 3t3w_A          175 KAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRA------------------------------------------  212 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHH------------------------------------------
T ss_pred             HHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHH------------------------------------------
Confidence             9999999999999999999999999999888754443                                          


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~-~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                               ++++|++.||.+++.+|++++.... .+++++++.++......-.   +.+.++|
T Consensus       213 -------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  264 (279)
T 3t3w_A          213 -------------------------LAGEIAKMPPFALRQAKRAVNQTLDVQGFYAAIQSVFDIHQTGHG---NAMSVSG  264 (279)
T ss_dssp             -------------------------HHHHHHTSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH---HHHHHTS
T ss_pred             -------------------------HHHHHHcCCHHHHHHHHHHHHHhhhcccHHHHHHHHhhHHHHHHH---HHHHhcC
Confidence                                     3889999999999999999998865 4799999888777544433   3444444


Q ss_pred             hh
Q 018384          348 SN  349 (357)
Q Consensus       348 i~  349 (357)
                      +.
T Consensus       265 ~~  266 (279)
T 3t3w_A          265 WP  266 (279)
T ss_dssp             SC
T ss_pred             Cc
Confidence            44

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=5e-50  Score=389.16  Aligned_cols=249  Identities=18%  Similarity=0.133  Sum_probs=201.9

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecC--------C-CccccccChHHHHHh
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--------G-RAFCAGGDIVSLYHF  103 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~--------g-~~F~~G~Dl~~~~~~  103 (357)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++|++++.|+++++|||||.        | ++||+|+|++++...
T Consensus       166 ~~~v~~e~~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~  245 (440)
T 2np9_A          166 MEAVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG  245 (440)
T ss_dssp             CSSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred             CceEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence            4578999999999999999999999999999999999999999999999999994        6 899999999987542


Q ss_pred             hccCChHHHHHHHHHHHHHHHHH------------hcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEeccccccc
Q 018384          104 MNQGKLEECKDFFRTLYSFIYLL------------GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIG  171 (357)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~i------------~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G  171 (357)
                      ...............+..++..+            .++||||||+|||+|+|||++|+++||+||++++++|++||+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lG  325 (440)
T 2np9_A          246 GISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEG  325 (440)
T ss_dssp             CCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTC
T ss_pred             CcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccC
Confidence            11111100111112233444443            479999999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCC
Q 018384          172 FHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVY  250 (357)
Q Consensus       172 l~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  250 (357)
                      ++|++| +++|++++|.. +++|++||+.|+|+||+++||||+|||++++.+.+..+                       
T Consensus       326 l~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~-----------------------  381 (440)
T 2np9_A          326 IIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERS-----------------------  381 (440)
T ss_dssp             CCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHH-----------------------
T ss_pred             cCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHH-----------------------
Confidence            999887 68999999999 99999999999999999999999999987765433222                       


Q ss_pred             CChhhHHHHHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHH---HHHHH
Q 018384          251 PDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFD---ECLVR  327 (357)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~---~~l~~  327 (357)
                                                                  +++|   ++.++..+|++++.... +++   +.++.
T Consensus       382 --------------------------------------------A~~l---a~~Av~~~K~~l~~~~~-~~~~~~~~l~~  413 (440)
T 2np9_A          382 --------------------------------------------LTRL---DGDAVLANRRMLNLADE-SPDGFRAYMAE  413 (440)
T ss_dssp             --------------------------------------------HHTT---CSHHHHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             --------------------------------------------HHHh---CHHHHHHHHHHHHhhhc-chhHHHHHHHH
Confidence                                                        3333   56899999999998754 444   55566


Q ss_pred             HHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018384          328 EYRMSLQGVSRLISGDFYEVSNFQILNKH  356 (357)
Q Consensus       328 e~~~~~~~~~~~~s~d~~egi~afl~~r~  356 (357)
                      |...+...+.   ++|++||+++|++||+
T Consensus       414 e~~~~~~~~~---s~D~~Egv~AFleKR~  439 (440)
T 2np9_A          414 FALMQALRLY---GHDVIDKVGRFGGRPP  439 (440)
T ss_dssp             HHHHHHHHHT---CHHHHHHHHTCC----
T ss_pred             HHHHHHHHhc---CHHHHHHHHHHHhCCC
Confidence            6666766676   9999999999999986

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1.4e-49  Score=364.70  Aligned_cols=227  Identities=16%  Similarity=0.220  Sum_probs=201.9

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..    .+....
T Consensus        15 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~~~~~   90 (257)
T 1szo_A           15 YENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL----GTPHDW   90 (257)
T ss_dssp             CTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCC----SSHHHH
T ss_pred             CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhc----CCHHHH
Confidence            3568999999999999999999999999999999999999999999999999999999999999988642    122223


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEec-ccccccccCCCcHHHHHhhcChHH-H
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT-PETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ..+....+.++.++.++||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++|++++|.. +
T Consensus        91 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A  169 (257)
T 1szo_A           91 DEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRG  169 (257)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence            334455667888999999999999999999 5999999999999999999999 999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      +++++||++++|+||+++||||+|+|++++.+.+.                                             
T Consensus       170 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  204 (257)
T 1szo_A          170 RYFLLTGQELDARTALDYGAVNEVLSEQELLPRAW---------------------------------------------  204 (257)
T ss_dssp             HHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999877754333                                             


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRM  331 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~  331 (357)
                                            +++++|+..||.+++.+|++++.....+++++++.|...
T Consensus       205 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~~~~~  243 (257)
T 1szo_A          205 ----------------------ELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLGLAH  243 (257)
T ss_dssp             ----------------------HHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence                                  348899999999999999999988777888888776543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=9.1e-49  Score=404.52  Aligned_cols=271  Identities=18%  Similarity=0.243  Sum_probs=220.2

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      ..++.+|+|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++....   ...     
T Consensus        23 ~~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~---~~~-----   93 (742)
T 3zwc_A           23 EYLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFT---PGL-----   93 (742)
T ss_dssp             EEEECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSC---SCS-----
T ss_pred             eEEEeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccC---hhH-----
Confidence            345678999999999997 79999999999999999999999999999999999999999999875431   111     


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHH
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (357)
                        .+..++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. |++|+
T Consensus        94 --~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~  171 (742)
T 3zwc_A           94 --ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLI  171 (742)
T ss_dssp             --HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHH
T ss_pred             --HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHH
Confidence              234577889999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  274 (357)
                      +||++++|+||+++||||+|+|++.+++..+...+++..++......+...    . .                ......
T Consensus       172 ltG~~i~a~eA~~~GLv~~vv~~d~~~~A~~~A~~ia~~~~~~~~~~~~~~----~-~----------------~~~~~~  230 (742)
T 3zwc_A          172 TSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKPV----P-S----------------LPNMDS  230 (742)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEESSCHHHHHHHHHHHHTTSCSGGGCGGGSCC----C-C----------------CTTHHH
T ss_pred             HcCCchhHHHHHHcCCccEecCchhhHHHHHHHHHHhcCCchhhhhhcccc----c-c----------------cchhhh
Confidence            999999999999999999999987665433333455555544322111100    0 0                000111


Q ss_pred             HHHHHhcccCCCCCchHHHHHHHHH--hcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018384          275 IIDSLESEASLINDPWCGSTLRLLK--EASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  352 (357)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~l~--~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl  352 (357)
                      ..               .....++.  ...+.+...+++.++.+...+++++++.|.+.|..++.   |++.++++++|+
T Consensus       231 ~~---------------~~~~~~~~k~~~~~~A~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~---s~~~k~~~~aFf  292 (742)
T 3zwc_A          231 VF---------------AEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRA---SGQAKALQYAFF  292 (742)
T ss_dssp             HH---------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHHH
T ss_pred             hH---------------HHHHHHHhhhccchhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence            10               01112222  23456888899999999999999999999999999998   999999999999


Q ss_pred             ccCC
Q 018384          353 LNKH  356 (357)
Q Consensus       353 ~~r~  356 (357)
                      .+|+
T Consensus       293 ~~r~  296 (742)
T 3zwc_A          293 AEKS  296 (742)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8874

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=2.1e-46  Score=388.15  Aligned_cols=288  Identities=14%  Similarity=0.109  Sum_probs=229.1

Q ss_pred             CceEEE-EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCC-ccccccChHHHHHhhccCChH
Q 018384           34 NQVLVE-GKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        34 ~~i~~~-~~~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      ..+.++ .+++|++||||||+ +.|+||.+|+.+|.+++++++.|+++++||||| |+ +||+|+|++++..... ....
T Consensus         6 ~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~-~~~~   83 (715)
T 1wdk_A            6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFK-LPDA   83 (715)
T ss_dssp             SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTT-SCHH
T ss_pred             CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhccc-CCHH
Confidence            457888 78899999999998 899999999999999999999999999999999 86 9999999998865311 1222


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. 
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~  163 (715)
T 1wdk_A           84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN  163 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHH
Confidence            3334455677888999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHH-hhhcCC-HHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG-KLVTDD-PSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      |++|++||++++|+||+++||||+|+|++++.+.+.+++ +++... |.....   .......... ...          
T Consensus       164 A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~---~~~~~p~~~~-~~~----------  229 (715)
T 1wdk_A          164 AVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKR---QPKLEKLKLN-AIE----------  229 (715)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHH---GGGGSCCSCC-HHH----------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhc---ccccCccccC-chh----------
Confidence            999999999999999999999999999888887666663 333321 211110   0000000000 000          


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                          ....+            ..+++.+.+-......+...+|++++.+...+++++++.|.+.+..++.   |+|++||
T Consensus       230 ----~~~~~------------~~~k~~~~~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~---s~~~~~~  290 (715)
T 1wdk_A          230 ----QMMAF------------ETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAK---TSASNCL  290 (715)
T ss_dssp             ----HHHHH------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             ----HHHHH------------HHHHHHHHHhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---chhHHHH
Confidence                00000            0111223444455566888899999999999999999999999999998   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      +.+|+++|+
T Consensus       291 ~~aF~~kr~  299 (715)
T 1wdk_A          291 IGLFLNDQE  299 (715)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhhhh
Confidence            999999874

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=7.7e-47  Score=391.75  Aligned_cols=282  Identities=19%  Similarity=0.246  Sum_probs=220.9

Q ss_pred             CceEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCC-ccccccChHHHHHhhccCChHH
Q 018384           34 NQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGR-AFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        34 ~~i~~~-~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~-~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ..+.++ .+++|++|||||| +.|+||.+|+.+|.+++++++.|+++++||||| |+ +||+|+|++++.... ......
T Consensus         7 ~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~-~~~~~~   83 (725)
T 2wtb_A            7 GKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQ-KGNVKE   83 (725)
T ss_dssp             CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC-------------C
T ss_pred             CeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhccc-chhhhh
Confidence            457888 7789999999999 799999999999999999999999999999999 86 999999999875321 000000


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ...+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. |
T Consensus        84 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A  163 (725)
T 2wtb_A           84 PKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKA  163 (725)
T ss_dssp             CSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHH
Confidence            011223445667788999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHH-hhhcCC-HH--HHHHHHHHhhccCCCChhhHHHHHHHHHHH
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG-KLVTDD-PS--VIEACLEKYSDLVYPDKNSVIHRIDIVDKC  266 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (357)
                      ++|++||++++|+||+++||||+|+|++++.+.+.+++ +++... |.  ++.     +.. ..+.              
T Consensus       164 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~-----~~~-~~~~--------------  223 (725)
T 2wtb_A          164 LEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVS-----KTD-KLPP--------------  223 (725)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGG-----CCT-TSCC--------------
T ss_pred             HHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhh-----hcc-ccCc--------------
Confidence            99999999999999999999999999999887665553 222220 11  010     000 0000              


Q ss_pred             cCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018384          267 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  346 (357)
Q Consensus       267 ~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~e  346 (357)
                           .....+.+         +|+.+.+.+..+.. .+...+|++++.+...+++++++.|.+.+..++.   |+|++|
T Consensus       224 -----~~~~~~~~---------~~a~~~~~~~~~g~-pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~---s~~~~~  285 (725)
T 2wtb_A          224 -----LGEAREIL---------TFAKAQTLKRAPNM-KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVK---LDTTKG  285 (725)
T ss_dssp             -----HHHHHHHH---------HHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             -----cchHHHHH---------HHHHHHHHHhccCC-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---chhHHH
Confidence                 00000000         35555677777774 4667799999999999999999999999999987   999999


Q ss_pred             hhhheeccCC
Q 018384          347 VSNFQILNKH  356 (357)
Q Consensus       347 gi~afl~~r~  356 (357)
                      |+.+|+++|+
T Consensus       286 ~~~aF~~kr~  295 (725)
T 2wtb_A          286 LIHVFFSQRG  295 (725)
T ss_dssp             HHHHHHHHHG
T ss_pred             HHHHhhhhhh
Confidence            9999999875

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=3.1e-43  Score=344.58  Aligned_cols=194  Identities=14%  Similarity=0.160  Sum_probs=173.3

Q ss_pred             ccCCCceEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHHcC-CCceEEEEec-CCCccccccCh
Q 018384           30 DDLCNQVLVEGKANSRMAILNRPS----------ALNALNTNMGAKLNKLFKAWEND-PNIGFVSMKG-SGRAFCAGGDI   97 (357)
Q Consensus        30 ~~~~~~i~~~~~~~v~~I~ln~p~----------~~Nal~~~~~~~L~~~l~~~~~d-~~v~~vvl~g-~g~~F~~G~Dl   97 (357)
                      +..+..+.++++++|++|+||||+          +.|+||.+|+.+|.+++++++.| +++++||||| .|++||+|+|+
T Consensus        17 p~~~~~v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL   96 (556)
T 2w3p_A           17 PSQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANI   96 (556)
T ss_dssp             GGGCSSEEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECH
T ss_pred             CCcCceEEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCH
Confidence            345677999999999999999998          89999999999999999999999 9999999999 88999999999


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHHHHHH----hcCCCcEEEEEccceechhhhhhccCCeEEEeCc--eEEeccccc-c
Q 018384           98 VSLYHFMNQGKLEECKDFFRTLYSFIYLL----GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-I  170 (357)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i----~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~  170 (357)
                      +++....    ......+...++.++..+    .++||||||+|||+|+|||++|+++||+||++++  ++|++||++ +
T Consensus        97 ~el~~~~----~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~L  172 (556)
T 2w3p_A           97 FMLGLST----HAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLL  172 (556)
T ss_dssp             HHHHHSC----HHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHH
T ss_pred             HHHhhcc----cHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEeccccccc
Confidence            9876421    122233445566777888    9999999999999999999999999999999999  999999999 9


Q ss_pred             cccCCCcHHHHHh--hcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 018384          171 GFHPDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL  227 (357)
Q Consensus       171 Gl~p~~g~~~~l~--r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l  227 (357)
                      |++|++|++++|+  |++|.. |++|+++|+.++|+||+++||||+|+|++++.+.+..+
T Consensus       173 GL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~l  232 (556)
T 2w3p_A          173 GVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQAR  232 (556)
T ss_dssp             SSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHH
Confidence            9999999999999  999998 99999999999999999999999999987776544433

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.85  E-value=3.9e-22  Score=202.41  Aligned_cols=168  Identities=17%  Similarity=0.173  Sum_probs=136.2

Q ss_pred             EeCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHH
Q 018384           40 GKANSRMAILNRPSALNA--LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR  117 (357)
Q Consensus        40 ~~~~v~~I~ln~p~~~Na--l~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~  117 (357)
                      .+++|++|++|+|...|+  ++..+..+|.++|+++..|+++++|||++.+    .|+|+...                .
T Consensus       299 ~~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~----------------~  358 (593)
T 3bf0_A          299 TGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTAS----------------E  358 (593)
T ss_dssp             CSCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHH----------------H
T ss_pred             CCCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHH----------------H
Confidence            457899999999988888  6889999999999999999999999999974    57787542                1


Q ss_pred             HHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccc------------cccccCCC---------
Q 018384          118 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDA---------  176 (357)
Q Consensus       118 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~---------  176 (357)
                      .++..+.++..++|||||+|+|.|.|||+.|+++||++||++++.|+.+++            ++|+.|+.         
T Consensus       359 ~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~  438 (593)
T 3bf0_A          359 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV  438 (593)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCC
T ss_pred             HHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeeccccccc
Confidence            233455677789999999999999999999999999999999999999985            58887643         


Q ss_pred             ----cHH---------------HHHhhcChHH------HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 018384          177 ----GAS---------------FYLSHLPGHL------GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL  227 (357)
Q Consensus       177 ----g~~---------------~~l~r~~g~~------a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l  227 (357)
                          +.+               ..+.+.++..      +.+++++|+.|+|+||+++||||++++.+++.+.+..+
T Consensus       439 ~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~  514 (593)
T 3bf0_A          439 SITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAEL  514 (593)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHH
Confidence                222               3344444431      57889999999999999999999999876665444433

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.83  E-value=3.6e-20  Score=167.69  Aligned_cols=162  Identities=12%  Similarity=0.058  Sum_probs=122.1

Q ss_pred             eCCEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHH
Q 018384           41 KANSRMAILNRPSALNALNTN-------MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECK  113 (357)
Q Consensus        41 ~~~v~~I~ln~p~~~Nal~~~-------~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~  113 (357)
                      +++|++|+++.+=..+.-...       .+.+|.++|+.+..|+++++|||++.    |.|+|+....            
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence            467899999876422210111       35899999999999999999999997    6788876431            


Q ss_pred             HHHHHHHHHHHHHhc-CCCcEEEEEccceechhhhhhccCCeEEEeCceEEecc---------------------ccccc
Q 018384          114 DFFRTLYSFIYLLGT-HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP---------------------ETLIG  171 (357)
Q Consensus       114 ~~~~~~~~l~~~i~~-~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~p---------------------e~~~G  171 (357)
                          .+...+..+.. ++|||||+++|.|.|||+.|+++||++|+++++.|+.+                     +++.|
T Consensus        66 ----~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G  141 (240)
T 3rst_A           66 ----EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSG  141 (240)
T ss_dssp             ----HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESS
T ss_pred             ----HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecc
Confidence                22345556666 89999999999999999999999999999999999999                     55667


Q ss_pred             ccCCCcHH--------------------------HHHhhcChHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          172 FHPDAGAS--------------------------FYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       172 l~p~~g~~--------------------------~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                      -.+..+..                          ..-.|.+.....+.+++|+.+++++|+++||||++.+.+++.+
T Consensus       142 ~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~~a~~A~~~GLVD~i~~~~~~~~  218 (240)
T 3rst_A          142 AHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTIT  218 (240)
T ss_dssp             TTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEEEHHHHHHTTSSSEECCHHHHHH
T ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHH
Confidence            66665522                          1223444444334478999999999999999999998665543

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.81  E-value=1.5e-19  Score=161.52  Aligned_cols=147  Identities=12%  Similarity=0.192  Sum_probs=123.6

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHH
Q 018384           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (357)
Q Consensus        41 ~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (357)
                      .+.|++|+++     ++++..+...|.+.|+.++.+ ++++|+|+..    |.|+|+...                   .
T Consensus         7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~-------------------~   57 (230)
T 3viv_A            7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM-------------------M   57 (230)
T ss_dssp             CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH-------------------H
T ss_pred             CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH-------------------H
Confidence            3569999998     579999999999999999864 5999999986    778876532                   2


Q ss_pred             HHHHHHhcCCCcEEEEE---ccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHH---------------HHH
Q 018384          121 SFIYLLGTHLKPHVAIL---NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS---------------FYL  182 (357)
Q Consensus       121 ~l~~~i~~~~kPvIa~v---~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l  182 (357)
                      .++..|..+++|||++|   +|.|.|+|+.|+++||++++.+++.|+.+++..+. |..|.+               ..+
T Consensus        58 ~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~l  136 (230)
T 3viv_A           58 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSL  136 (230)
T ss_dssp             HHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHH
Confidence            35566778999999999   99999999999999999999999999999987643 444432               246


Q ss_pred             hhcChH--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 018384          183 SHLPGH--L-GEFLALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       183 ~r~~g~--~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      ++..|.  . +.+++.++..++|+||+++||||+|+++
T Consensus       137 a~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          137 AQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             HHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             HHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence            677774  4 8999999999999999999999999975

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.61  E-value=3.8e-15  Score=132.46  Aligned_cols=139  Identities=11%  Similarity=0.093  Sum_probs=107.0

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .++.++..++...|..++.|+.++.|+|.-    .|.|+++..-                   ..++..|..+++||++.
T Consensus        53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I----nSPGG~v~ag-------------------~~I~~~i~~~~~pV~t~  109 (218)
T 1y7o_A           53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYV----NTPGGSVSAG-------------------LAIVDTMNFIKADVQTI  109 (218)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE----EECCBCHHHH-------------------HHHHHHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEE----ECcCCCHHHH-------------------HHHHHHHHhcCCCEEEE
Confidence            388999999999999999887778777764    4555554321                   12445567789999999


Q ss_pred             EccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcH------------------HHHHhhcChH--H-HHHH
Q 018384          137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGA------------------SFYLSHLPGH--L-GEFL  193 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~------------------~~~l~r~~g~--~-a~~l  193 (357)
                      ++|.|.++|+.|+++||.  |++.+++.|++++.. |..|..|.                  ...+++..|.  . +.++
T Consensus       110 v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~  188 (218)
T 1y7o_A          110 VMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD  188 (218)
T ss_dssp             EEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             EccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999  999999999999987 43343333                  2445666564  3 7778


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCC
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVSEK  219 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~~~  219 (357)
                      +.+|..++|+||+++||||+|+++++
T Consensus       189 ~~~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          189 AERDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             HHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             HhCCCEEcHHHHHHCCCCcEEcCcCC
Confidence            89999999999999999999998765

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.60  E-value=2.2e-15  Score=140.08  Aligned_cols=150  Identities=15%  Similarity=0.151  Sum_probs=116.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |.++..+..-..|+++..+..++.++++.+.++ .+.+|+|++.|     |+|+.+...        ..    ..+..++
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~--------~l----~~~~~i~  181 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALM--------SL----MQMAKTS  181 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHH--------HH----HHHHHHH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHH--------HH----HHHHHHH
Confidence            555556655578999999999999999999988 79999999976     778754321        11    2223444


Q ss_pred             HHH---hcCCCcEEEEEccceechh-hhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCC
Q 018384          124 YLL---GTHLKPHVAILNGVTMGGG-AGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAK  199 (357)
Q Consensus       124 ~~i---~~~~kPvIa~v~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~  199 (357)
                      .++   ...++|+|++|+|+|+||| +.++++||++|+.++|.|++.           +...+++.+|..     ++++.
T Consensus       182 ~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~-----l~~~~  245 (304)
T 2f9y_B          182 AALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK-----LPPGF  245 (304)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC-----CCTTT
T ss_pred             HHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc-----CCccc
Confidence            444   4559999999999999999 788999999999999999987           344556666642     56889


Q ss_pred             CCHHHHHHcCccceecCCCChhHHHHHH
Q 018384          200 LNGAEMMACGLATHYSVSEKLPLIEEEL  227 (357)
Q Consensus       200 i~a~eA~~~GLv~~vv~~~~l~~~~~~l  227 (357)
                      .+++++.++|+||.|++++++.+....+
T Consensus       246 ~~Ae~~~~~Glvd~Vv~~~el~~~l~~l  273 (304)
T 2f9y_B          246 QRSEFLIEKGAIDMIVRRPEMRLKLASI  273 (304)
T ss_dssp             TBHHHHGGGTCCSEECCHHHHHHHHHHH
T ss_pred             CCHHHHHhcCCccEEeCcHHHHHHHHHH
Confidence            9999999999999999887665544444

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.56  E-value=5.4e-14  Score=131.96  Aligned_cols=152  Identities=12%  Similarity=0.079  Sum_probs=110.3

Q ss_pred             eCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           41 KANSRMAILNRPS---------ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        41 ~~~v~~I~ln~p~---------~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      +|.-..|.-|++.         ..++++++......+.++.+++.. +-+|.|.-.++++. |.+...            
T Consensus       115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~Ga~~-g~~ae~------------  180 (327)
T 2f9i_A          115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTKGAYP-GKAAEE------------  180 (327)
T ss_dssp             TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-CHHHHH------------
T ss_pred             CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCCc-chhhhh------------
Confidence            4545556666664         347899999999999999988765 45666655443332 221111            


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                       ......+..++..+..+++|+|++|+|.|.|||+.++++||++||++++.|++      +.|.++++.++.+..+.. +
T Consensus       181 -~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A  253 (327)
T 2f9i_A          181 -RGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIA  253 (327)
T ss_dssp             -TTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHH
T ss_pred             -hhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHH
Confidence             01123345567788999999999999999999999999999999999999885      345555555544444434 6


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      .++    +.++|++|+++|+||+|+|.
T Consensus       254 ~e~----~~itA~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          254 AET----MKITAHDIKQLGIIDDVISE  276 (327)
T ss_dssp             HHH----HTCBHHHHHHTTSSSEEECC
T ss_pred             HHH----cCCCHHHHHHcCCceEEecC
Confidence            665    78999999999999999984

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.53  E-value=1.1e-13  Score=130.39  Aligned_cols=138  Identities=12%  Similarity=0.019  Sum_probs=107.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      .++++++......+.++.+++.. +-+|.|.-.++++. |.....             ......+..++..+..+++|+|
T Consensus       152 ~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~Ga~~-g~~aE~-------------~g~~~~~a~~l~al~~~~vPvI  216 (339)
T 2f9y_A          152 FGMPAPEGYRKALRLMQMAERFK-MPIITFIDTPGAYP-GVGAEE-------------RGQSEAIARNLREMSRLGVPVV  216 (339)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-SHHHHH-------------TTHHHHHHHHHHHHHTCSSCEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCcc-chHHHH-------------HHHHHHHHHHHHHHHhCCCCEE
Confidence            47899999999999999888764 55666655443332 221111             0122344556778899999999


Q ss_pred             EEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccce
Q 018384          135 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH  213 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~  213 (357)
                      ++|+|.|.|||+.++++||++|+.++++|++      +.|.+++++++++..+.. +.++    ..++|++|+++|+||+
T Consensus       217 avV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~  286 (339)
T 2f9y_A          217 CTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDS  286 (339)
T ss_dssp             EEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSC
T ss_pred             EEEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeE
Confidence            9999999999999999999999999999996      467777777777776666 7776    6799999999999999


Q ss_pred             ecCC
Q 018384          214 YSVS  217 (357)
Q Consensus       214 vv~~  217 (357)
                      |+|.
T Consensus       287 VV~e  290 (339)
T 2f9y_A          287 IIPE  290 (339)
T ss_dssp             CCCC
T ss_pred             EecC
Confidence            9984

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.05  E-value=1.8e-09  Score=95.10  Aligned_cols=135  Identities=16%  Similarity=0.098  Sum_probs=96.5

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .++..+...+...|..++.++.++.|+|.=.    |.|+++..                   ...++..|..+++||++.
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~In----SPGG~v~a-------------------~~~I~~~i~~~~~pV~~~   91 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYIN----SPGGSISA-------------------GMAIYDTMVLAPCDIATY   91 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHCSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEE
Confidence            3678899999999999987766676666532    44444321                   123455667789999999


Q ss_pred             EccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcHH------------------HHHhhcCh--HH-HHHH
Q 018384          137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS------------------FYLSHLPG--HL-GEFL  193 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~~g--~~-a~~l  193 (357)
                      +.|.|.++|..++++||.  |++.+++.++.....-|.   .|..                  ..+.+..|  .. ..++
T Consensus        92 v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~  168 (208)
T 2cby_A           92 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEAD  168 (208)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             ECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            999999999999999999  999999999987765332   1110                  11222222  22 4557


Q ss_pred             HhcCCCCCHHHHHHcCccceecCC
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      +..|..++++||+++||||++.+.
T Consensus       169 ~~~~~~~ta~eA~e~GLvD~i~~~  192 (208)
T 2cby_A          169 SDRDRWFTAAEALEYGFVDHIITR  192 (208)
T ss_dssp             HHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             HhCCcEEcHHHHHHcCCCcEecCc
Confidence            789999999999999999999864

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.73  E-value=1.6e-07  Score=82.00  Aligned_cols=140  Identities=15%  Similarity=0.074  Sum_probs=95.9

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .++..+...+...|..++.++..+.|+|.=+    |.|+++..-                   ..++..|...++||++.
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~~~-------------------~~I~~~i~~~~~~V~t~   91 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYIN----SPGGSVTAG-------------------FAIYDTIQHIKPDVQTI   91 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHHH-------------------HHHHHHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEe----CCCCCHHHH-------------------HHHHHHHHHhcCCcEEE
Confidence            4888999999999999987665665555432    344443221                   22445566789999999


Q ss_pred             EccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcHH----HH-----------HhhcCh--HH-HHHHHhc
Q 018384          137 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS----FY-----------LSHLPG--HL-GEFLALT  196 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~----~~-----------l~r~~g--~~-a~~l~lt  196 (357)
                      +.|.|.++|..++++||  .|++.+++.|.+....-|..-..--.    ..           +.+.-|  .. ...++-.
T Consensus        92 ~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~  171 (203)
T 3qwd_A           92 CIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDR  171 (203)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTS
T ss_pred             EeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhc
Confidence            99999999999999999  69999999998866543321100000    00           111112  12 4455556


Q ss_pred             CCCCCHHHHHHcCccceecCCCC
Q 018384          197 GAKLNGAEMMACGLATHYSVSEK  219 (357)
Q Consensus       197 G~~i~a~eA~~~GLv~~vv~~~~  219 (357)
                      ...++|+||+++||||+|+++..
T Consensus       172 d~~lta~EA~e~GliD~I~~~~~  194 (203)
T 3qwd_A          172 DNFLTAEEAKEYGLIDEVMVPET  194 (203)
T ss_dssp             CCCEEHHHHHHHTSCSEECCCCC
T ss_pred             CceecHHHHHHcCCcCEecCCcc
Confidence            67799999999999999997653

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.69  E-value=5.7e-08  Score=84.44  Aligned_cols=135  Identities=16%  Similarity=0.072  Sum_probs=93.8

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .++..+...+...|..++.++..+.|+|.=.    |.|+++..-                   ..++..|...++||++.
T Consensus        34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~a~-------------------~~I~~~i~~~~~pV~~~   90 (193)
T 1yg6_A           34 QVEDHMANLIVAQMLFLEAENPEKDIYLYIN----SPGGVITAG-------------------MSIYDTMQFIKPDVSTI   90 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHHH-------------------HHHHHHHHHSSSCEEEE
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CcCCCHHHH-------------------HHHHHHHHhcCCCEEEE
Confidence            3788899999999999887666676666533    444444221                   22445566788999999


Q ss_pred             EccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcHH-H-----------------HHhhcCh--HH-HHHH
Q 018384          137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS-F-----------------YLSHLPG--HL-GEFL  193 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~-~-----------------~l~r~~g--~~-a~~l  193 (357)
                      +.|.|..+|.-++++||.  |++.+++.++......|..   |.. -                 .+.+..|  .. ...+
T Consensus        91 v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~---G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~  167 (193)
T 1yg6_A           91 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD  167 (193)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEecccccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999  9999999988766553321   110 0                 0111112  12 3344


Q ss_pred             HhcCCCCCHHHHHHcCccceecCC
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      +-.+..++++||+++||||++.++
T Consensus       168 ~~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          168 TERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             TSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             hcCCeEEcHHHHHHcCCCCEecCC
Confidence            434556799999999999999865

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.68  E-value=2.6e-07  Score=81.50  Aligned_cols=138  Identities=14%  Similarity=0.066  Sum_probs=91.4

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .++..+...+...|..++.++. +.|+|.=.    |.|+++..-                   ..++..|...++||++.
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~IN----SPGGsv~a~-------------------~~I~~~i~~~~~pV~t~  102 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYIN----SPGGSINEG-------------------LAILDIFNYIKSDIQTI  102 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEE----ECCBCHHHH-------------------HHHHHHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEE
Confidence            3678888999999998876554 65555432    344443221                   22445566788999999


Q ss_pred             EccceechhhhhhccCCe--EEEeCceEEecccccccccC---CCcH----HHHH--------hhcCh--HH-HHHHHhc
Q 018384          137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHP---DAGA----SFYL--------SHLPG--HL-GEFLALT  196 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p---~~g~----~~~l--------~r~~g--~~-a~~l~lt  196 (357)
                      +.|.|..+|.-++++||.  |++.+++.+++.....|...   +...    ...+        .+..|  .. ...++-.
T Consensus       103 v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~  182 (215)
T 2f6i_A          103 SFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR  182 (215)
T ss_dssp             EEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             EeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhC
Confidence            999999999999999999  99999999987765433210   1100    0000        11111  12 3344444


Q ss_pred             CCCCCHHHHHHcCccceecCCC
Q 018384          197 GAKLNGAEMMACGLATHYSVSE  218 (357)
Q Consensus       197 G~~i~a~eA~~~GLv~~vv~~~  218 (357)
                      +..++++||+++||||++.++.
T Consensus       183 ~~~lta~eA~e~GLiD~I~~~~  204 (215)
T 2f6i_A          183 DYYMNALEAKQYGIIDEVIETK  204 (215)
T ss_dssp             TCEECHHHHHHHTSCSEECCCS
T ss_pred             CeecCHHHHHHCCCCCEecCCc
Confidence            4557999999999999998654

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.59  E-value=4.3e-07  Score=82.68  Aligned_cols=135  Identities=13%  Similarity=0.055  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 018384           58 LNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  137 (357)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v  137 (357)
                      ++.++...+...|..++.++..+.|+|.=+    |-|+++..-                   ..++..|...++||++.+
T Consensus        91 I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN----SPGGsV~ag-------------------~aIyd~I~~~k~pV~t~v  147 (277)
T 1tg6_A           91 IDDSVASLVIAQLLFLQSESNKKPIHMYIN----SPGGVVTAG-------------------LAIYDTMQYILNPICTWC  147 (277)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHHH-------------------HHHHHHHHHSCSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence            788899999999988866444566666532    344443221                   124445667889999999


Q ss_pred             ccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcH-HHH-----------------HhhcCh--HH-HHHHH
Q 018384          138 NGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGA-SFY-----------------LSHLPG--HL-GEFLA  194 (357)
Q Consensus       138 ~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~-~~~-----------------l~r~~g--~~-a~~l~  194 (357)
                      .|.|..+|.-++++||.  |++.+++.++.....-|.   .|- .-.                 +.+..|  .. ...++
T Consensus       148 ~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~---~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~  224 (277)
T 1tg6_A          148 VGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA---RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM  224 (277)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             ccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccc---cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999999  999999998876654332   111 100                 111111  12 34444


Q ss_pred             hcCCCCCHHHHHHcCccceecCCC
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSE  218 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~  218 (357)
                      -.+..++++||+++||||++.+..
T Consensus       225 drd~~lta~EAle~GLID~I~~~~  248 (277)
T 1tg6_A          225 ERDRYMSPMEAQEFGILDKVLVHP  248 (277)
T ss_dssp             SSCEEECHHHHHHHTSCSEECSSC
T ss_pred             hcCcccCHHHHHHCCCCCEecCcc
Confidence            445667999999999999999653

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.54  E-value=1.7e-07  Score=81.72  Aligned_cols=135  Identities=16%  Similarity=0.056  Sum_probs=92.7

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  136 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~  136 (357)
                      .++..+...+...|..++.++..+.|+|.=.    |.|+++..-                   ..++..+...++||++.
T Consensus        38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~~-------------------~~I~~~i~~~~~~v~t~   94 (201)
T 3p2l_A           38 EVNDHSANLVIAQLLFLESEDPDKDIYFYIN----SPGGMVTAG-------------------MGVYDTMQFIKPDVSTI   94 (201)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHHH-------------------HHHHHHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHHhCCCeEEE
Confidence            4788999999999999887655565555432    444443221                   22445566788999999


Q ss_pred             EccceechhhhhhccCCe--EEEeCceEEecccccccccCCCcHHH----------HH--------hhcCh--HH-HHHH
Q 018384          137 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF----------YL--------SHLPG--HL-GEFL  193 (357)
Q Consensus       137 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~----------~l--------~r~~g--~~-a~~l  193 (357)
                      +.|.|.++|.-++++||.  |++.+++.+.+....-|.   .|-..          .+        .+..|  .. ...+
T Consensus        95 ~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~  171 (201)
T 3p2l_A           95 CIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKD  171 (201)
T ss_dssp             EEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EcCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            999999999999999998  999999999887665332   11110          01        11112  12 3344


Q ss_pred             HhcCCCCCHHHHHHcCccceecCC
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      +-....++|+||+++||||+|+++
T Consensus       172 ~~~~~~lta~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          172 TDRDNFMMADEAKAYGLIDHVIES  195 (201)
T ss_dssp             TSSCEEEEHHHHHHHTSCSEECCC
T ss_pred             hhcCeeecHHHHHHcCCccEecCC
Confidence            434445799999999999999865

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.49  E-value=9e-06  Score=80.14  Aligned_cols=200  Identities=12%  Similarity=0.091  Sum_probs=145.2

Q ss_pred             EEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHH-cCCCceEEEEecCCCccccccChHHHHH--
Q 018384           39 EGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWE-NDPNIGFVSMKGSGRAFCAGGDIVSLYH--  102 (357)
Q Consensus        39 ~~~~~v~~I~ln~p~~~-------------Nal~~~~~~~L~~~l~~~~-~d~~v~~vvl~g~g~~F~~G~Dl~~~~~--  102 (357)
                      .+..+++.++...|...             +.....|..||.+++..+. +++++...++...|+.       ..+..  
T Consensus       273 ~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~-------~~~~~~~  345 (556)
T 2w3p_A          273 DRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA-------RHLLAAD  345 (556)
T ss_dssp             ETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH-------HHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH-------HHHhhhH
Confidence            34457888898876531             3334568889977776665 5678999988877643       22211  


Q ss_pred             -h-hccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEc-cceechh-hhhhccCCeEEEeC-------ceEEeccccccc
Q 018384          103 -F-MNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN-GVTMGGG-AGVSIPGTFRVACG-------KTVFATPETLIG  171 (357)
Q Consensus       103 -~-~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~-G~a~GgG-~~lal~~D~~ia~~-------~a~f~~pe~~~G  171 (357)
                       . ....+...+.+....+.+.+.++.-...-++|.|. |.|+.|- ++|+++||..++-+       .+.+.+.+.++|
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (556)
T 2w3p_A          346 ASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFG  425 (556)
T ss_dssp             HHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGT
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccC
Confidence             0 01223445556666677788888889999999996 8998775 69999999999853       478999999999


Q ss_pred             ccCCCcHHHHHhhcC-hHH-H--HHHHhcCCCCCHHHHHHcCccceecCCCChhHHH-HHHHhhhcCCHHHHHHHHHHh
Q 018384          172 FHPDAGASFYLSHLP-GHL-G--EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIE-EELGKLVTDDPSVIEACLEKY  245 (357)
Q Consensus       172 l~p~~g~~~~l~r~~-g~~-a--~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~  245 (357)
                      ..|..-+..+|.++. |.. .  .--...|+++++++|.++|||+...++-++++.. -.+.+.++.+|+++-..-..+
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (556)
T 2w3p_A          426 LYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALTGLEANL  504 (556)
T ss_dssp             TSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             cccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcchhccchhhc
Confidence            999887777777654 322 1  1224569999999999999999998887887654 445899999999986544433

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=98.19  E-value=1.4e-05  Score=69.48  Aligned_cols=143  Identities=10%  Similarity=0.074  Sum_probs=91.0

Q ss_pred             CCCHHHHHHHHHHHHHHHcCCCce--EEEEecCCCcc----ccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCC
Q 018384           57 ALNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAF----CAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL  130 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~v~--~vvl~g~g~~F----~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  130 (357)
                      .++.++...+...|..++.++..+  .|.|-+.|..-    -.-+|+..                   ...++..|...+
T Consensus        36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~a-------------------glaIyd~m~~~~   96 (205)
T 4gm2_A           36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITD-------------------VISIVDVINYIS   96 (205)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHH-------------------HHHHHHHHHHSS
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHH-------------------HHHHHHHHHhcC
Confidence            488999999999999887543223  33344444110    00022211                   123455667789


Q ss_pred             CcEEEEEccceechhhhhhccCC--eEEEeCceEEecccccccc-cCCC-cHH------HHHh--------hcChH--H-
Q 018384          131 KPHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGF-HPDA-GAS------FYLS--------HLPGH--L-  189 (357)
Q Consensus       131 kPvIa~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl-~p~~-g~~------~~l~--------r~~g~--~-  189 (357)
                      .||...+-|.|.+.|..|++++|  .|++.+++.+.+-....|. .-.. -..      ..+.        +.-|.  . 
T Consensus        97 ~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~  176 (205)
T 4gm2_A           97 SDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNV  176 (205)
T ss_dssp             SCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred             CCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            99999999999999999999999  5999999998877665443 1100 000      0011        11111  1 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSE  218 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~  218 (357)
                      ..+++-....++|+||+++||||+|++.|
T Consensus       177 I~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          177 ISNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence            23444455669999999999999999754

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=98.07  E-value=1.6e-05  Score=80.58  Aligned_cols=87  Identities=14%  Similarity=-0.025  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHcCCCceEEEEecCCCccccc-cChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 018384           62 MGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAG-GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  140 (357)
Q Consensus        62 ~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G-~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~  140 (357)
                      ...++.+.|+.+..|+.++.|+|.-.    |.| +++...                ..+++.+..+....|||||.+++ 
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~----------------~~I~~~i~~~k~~gkpvva~~~~-  129 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSM----------------QYIGKALKEFRDSGKPVYAVGEN-  129 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHH----------------HHHHHHHHHHHHTTCCEEEEESC-
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHH----------------HHHHHHHHHHHhcCCeEEEEEcc-
Confidence            46778889999999999999999875    444 555432                12233444555567999999876 


Q ss_pred             eechhhhhhccCCeEEEeCceEEeccccc
Q 018384          141 TMGGGAGVSIPGTFRVACGKTVFATPETL  169 (357)
Q Consensus       141 a~GgG~~lal~~D~~ia~~~a~f~~pe~~  169 (357)
                      +..+|+-|+++||-+++.+.+.++...+.
T Consensus       130 aas~~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          130 YSQGQYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             EEHHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             chhHHHHHHHhCCEEEECCCceEEEeccc
Confidence            66788999999999999999988887664

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=98.00  E-value=0.00024  Score=65.09  Aligned_cols=151  Identities=9%  Similarity=0.071  Sum_probs=95.6

Q ss_pred             eCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KAN-SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~-v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      +|. |.++..|..-..-+++....+.+.++++.+.+.. +-+|.|.-.|++     -..+-        .... .....+
T Consensus       119 ~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsgGa-----r~qEG--------i~sl-~q~aki  183 (285)
T 2f9i_B          119 DGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASGGA-----RMQEG--------IISL-MQMGKT  183 (285)
T ss_dssp             TTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEECSC-----CGGGH--------HHHH-HHHHHH
T ss_pred             CCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCc-----chhhh--------hhhH-hHHHHH
Confidence            444 4444443333557899999999999999988764 677877765443     22110        0000 111233


Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhh-hccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCC
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA  198 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~  198 (357)
                      ...+.++....+|.|+.+-|+|.||+... ++.+|++++.+++.+++-..       -+....+.+-+.         -.
T Consensus       184 ~~~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP-------~vi~~~~~~~~~---------e~  247 (285)
T 2f9i_B          184 SVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGR-------RVIEQTINEKLP---------DD  247 (285)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH-------HHHHHHHTSCCC---------TT
T ss_pred             HHHHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCH-------HHHHHHhcccch---------Hh
Confidence            34556667789999999999999998544 88999999998887765321       111222222111         01


Q ss_pred             CCCHHHHHHcCccceecCCCChhH
Q 018384          199 KLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       199 ~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                      --+++.+.+.|+||.|++++++.+
T Consensus       248 ~~~Ae~~~~~G~iD~Iv~~~e~r~  271 (285)
T 2f9i_B          248 FQTAEFLLEHGQLDKVVHRNDMRQ  271 (285)
T ss_dssp             TTBHHHHHHTTCCSEECCGGGHHH
T ss_pred             HhhHHHHHhcCCccEEeChHHHHH
Confidence            124777889999999999876543

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.94  E-value=1.7e-05  Score=79.54  Aligned_cols=155  Identities=11%  Similarity=0.022  Sum_probs=102.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |.++-.+..-...++.+...+.+..+++.+.+.. +-+|.|.-     |+|..+.+-.......  ....+    +..-.
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~d-----SgGArlqe~~~~l~~~--~~~g~----i~~~~  174 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYPNR--RGGGT----PFFRN  174 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSSST--TSTTH----HHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEe-----CCCCCccccchhcccc--ccHHH----HHHHH
Confidence            4455555544667899999999999999988764 56777765     4555554422211100  00011    12223


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEeccccc--ccccCCCcHHHHHhhcChHH-HHHHH-hcCC
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETL--IGFHPDAGASFYLSHLPGHL-GEFLA-LTGA  198 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~--~Gl~p~~g~~~~l~r~~g~~-a~~l~-ltG~  198 (357)
                      ..+....+|+|++|.|+|.|||... ..||++|+.++ +.+++.-..  -++.|        --.++.. |.+++ .+|+
T Consensus       175 ~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~--------~~~~d~~~A~el~~~tge  245 (587)
T 1pix_A          175 AELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNP--------KGHVDLEYANEIADMVDR  245 (587)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCS--------SSSCCHHHHHHHHHHHHT
T ss_pred             HHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhcc--------ccccchhHHHHHHHHhCC
Confidence            4566788999999999999999999 88999988774 888773221  11111        0125667 88888 8999


Q ss_pred             CCCHHH-----H--HHcCccceecCCCC
Q 018384          199 KLNGAE-----M--MACGLATHYSVSEK  219 (357)
Q Consensus       199 ~i~a~e-----A--~~~GLv~~vv~~~~  219 (357)
                      .+++++     .  .+.|++|.++++++
T Consensus       246 ~v~~e~lgga~~h~~~~GvvD~vv~~e~  273 (587)
T 1pix_A          246 TGKTEPPGAVDIHYTETGFMREVYASEE  273 (587)
T ss_dssp             TCCCCCSSBHHHHTTTSCCSCEEESSHH
T ss_pred             ccChhhcccHHHHHhhcCceeEecCCHH
Confidence            887665     2  36999999998765

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.75  E-value=0.00067  Score=67.18  Aligned_cols=141  Identities=17%  Similarity=0.163  Sum_probs=93.8

Q ss_pred             eCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KAN-SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~-v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      +|. |.++..+-.-..-++.....+.+..+++.+.+. .+-+|.|.-+|     |..+.+-        ......+.+.+
T Consensus        95 ~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSg-----GaRmqEg--------~~~l~~~~~i~  160 (530)
T 3iav_A           95 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG-----GARIQEG--------VASLGAYGEIF  160 (530)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SBCGGGT--------HHHHHHHHHHH
T ss_pred             CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhhh--------hhhHHHHHHHH
Confidence            444 344444444467899999999999999999876 46677777644     3333221        11111222222


Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCC
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA  198 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~  198 (357)
                      ..+ .++.. .+|+|+++.|+|.|||.....+||++|++++ +.+++.                    |+...+ ..+|+
T Consensus       161 ~~~-~~~s~-~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~-~~~ge  217 (530)
T 3iav_A          161 RRN-THASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK-TVTGE  217 (530)
T ss_dssp             HHH-HHTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH-HHHCC
T ss_pred             HHH-HHHcC-CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH-HHhCC
Confidence            222 22222 3999999999999999988889999999885 777763                    222111 25788


Q ss_pred             CCCHHHH-------HHcCccceecCCC
Q 018384          199 KLNGAEM-------MACGLATHYSVSE  218 (357)
Q Consensus       199 ~i~a~eA-------~~~GLv~~vv~~~  218 (357)
                      .+++++.       ...|++|.+++++
T Consensus       218 ~v~~e~LGGa~~h~~~sGv~d~va~de  244 (530)
T 3iav_A          218 DVGFEELGGARTHNSTSGVAHHMAGDE  244 (530)
T ss_dssp             CCCHHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             cCChhhcchHHHHHhccCceeEEecCh
Confidence            8998876       6899999999875

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.65  E-value=0.00084  Score=66.44  Aligned_cols=139  Identities=12%  Similarity=0.133  Sum_probs=92.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |.++..+..-..-++.....+.+..+++.+.+.. +-+|.|.-+|     |..+.+-        ......+.+.+....
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSG-----GARmqeg--------~~sl~~~~~i~~~~~  172 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNG-APVIGINDSG-----GARIQEG--------VDSLAGYGEVFQRNI  172 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC-----CBCGGGT--------HHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHcC-CCEEEEeCCC-----ccccCcc--------cchhhhHHHHHHHHH
Confidence            4444444444678999999999999999988654 5677777643     4433321        111111111112211


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a  202 (357)
                       .+ .-.+|+|+++.|+|.|||......||++|+.++ +.+++.                    |+...+ ..+|+.+++
T Consensus       173 -~~-s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~-~~~ge~v~~  229 (531)
T 3n6r_B          173 -MA-SGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVK-TVTNEQVSA  229 (531)
T ss_dssp             -HT-TTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH-HHHCCCCCH
T ss_pred             -HH-hCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHH-HHhCCccCh
Confidence             12 245999999999999999988888999999985 665541                    222111 257899999


Q ss_pred             HHH-------HHcCccceecCCCC
Q 018384          203 AEM-------MACGLATHYSVSEK  219 (357)
Q Consensus       203 ~eA-------~~~GLv~~vv~~~~  219 (357)
                      ++.       .+.|++|.++++++
T Consensus       230 E~LGGa~~h~~~sG~~d~v~~~e~  253 (531)
T 3n6r_B          230 EELGGATTHTRKSSVADAAFENDV  253 (531)
T ss_dssp             HHHHBHHHHHHTTSCCSEEESSHH
T ss_pred             hhcchHHHHhhccCcceEEeCCHH
Confidence            998       89999999998743

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.58  E-value=0.0014  Score=64.97  Aligned_cols=138  Identities=14%  Similarity=0.144  Sum_probs=91.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |.++..+-.=..-++.....+.+..+++.+.++ .+-+|.|.-     |.|..+.+-..        ....+.+.+..+.
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~--------sl~~~~~i~~~~~  162 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGID--------SLSGYGKMFFANV  162 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHH--------HHHHHHHHHHHHH
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHH--------HHHHHHHHHHHHH
Confidence            444444444467899999999999999998875 466777776     55555543211        1112222222222


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  203 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~  203 (357)
                       .+ .-.+|.|+++.|+|.||+......||++|+.+++.+++.                    |+...+ ..+|+.++.+
T Consensus       163 -~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~-~~~ge~~~~e  219 (523)
T 1on3_A          163 -KL-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIK-SVTGEDVTAD  219 (523)
T ss_dssp             -HH-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHH-HHHCCCCCHH
T ss_pred             -Hh-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHH-HHhCCcCChH
Confidence             22 345999999999999999998899999999999877665                    222111 1457777754


Q ss_pred             -----HHH--HcCccceecCCC
Q 018384          204 -----EMM--ACGLATHYSVSE  218 (357)
Q Consensus       204 -----eA~--~~GLv~~vv~~~  218 (357)
                           +.+  +.|++|.+++++
T Consensus       220 ~lggae~h~~~~G~vd~vv~d~  241 (523)
T 1on3_A          220 ELGGAEAHMAISGNIHFVAEDD  241 (523)
T ss_dssp             HHHSHHHHHHTTCCCSEEESSH
T ss_pred             hcccHHHHhhccCceEEEeCCH
Confidence                 322  699999999864

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.50  E-value=0.0025  Score=63.15  Aligned_cols=138  Identities=12%  Similarity=0.089  Sum_probs=90.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |.++..+-.=..-++.....+.+..+++.+.+. .+-+|.|..     |.|..+.+-..        ....+.+.+..+.
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~~--------sl~~~~~i~~~~~  158 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGAL--------SLEGYGAVFKMNV  158 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHH--------HHHHHHHHHHHHH
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHHH--------HHHHHHHHHHHHH
Confidence            444444443367799999999999999998875 467788876     45555543111        1112222222222


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-e-EEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCC
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-T-VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLN  201 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a-~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~  201 (357)
                       .+ .-.+|.|+++.|+|.||+......||++|+.++ + .+++.                    |+...+ ..+|+.++
T Consensus       159 -~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a--------------------GP~vI~-~~~ge~~~  215 (522)
T 1x0u_A          159 -MA-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT--------------------GPEITK-VVLGEEVS  215 (522)
T ss_dssp             -HH-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESS--------------------CHHHHH-HTTCCCCC
T ss_pred             -Hh-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEec--------------------CHHHHH-HHhCCcCC
Confidence             22 345999999999999999988899999999987 7 66652                    222111 14667777


Q ss_pred             HH-----HHH--HcCccceecCCC
Q 018384          202 GA-----EMM--ACGLATHYSVSE  218 (357)
Q Consensus       202 a~-----eA~--~~GLv~~vv~~~  218 (357)
                      .+     +.+  +.|++|.+++++
T Consensus       216 ~e~lggae~~~~~~G~~d~vv~~~  239 (522)
T 1x0u_A          216 FQDLGGAVVHATKSGVVHFMVDSE  239 (522)
T ss_dssp             HHHHHBHHHHHHTTCCCSEEESCH
T ss_pred             hhhcchHHHHhhcCceeEEEeCCH
Confidence            54     222  699999999864

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.45  E-value=0.0025  Score=63.39  Aligned_cols=138  Identities=16%  Similarity=0.145  Sum_probs=90.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |.++-.+-.=..-++.....+.+..+++.+.++ .+-+|.|.-     |.|..+.+-.        .....+.+.+..+.
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~--------~sl~~~~~i~~~~~  175 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGV--------VSLGLYSRIFRNNI  175 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTT--------HHHHHHHHHHHHHH
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHH--------HHHHHHHHHHHHHH
Confidence            444444443367799999999999999998875 467787776     4455554311        11112222222222


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a  202 (357)
                       .+ .-.+|.|+++.|+|.||+......||++|+.++ +.+++.                    |+...+ ..+|+.++.
T Consensus       176 -~~-s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~-~~~ge~v~~  232 (548)
T 2bzr_A          176 -LA-SGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIK-TVTGEEVTM  232 (548)
T ss_dssp             -HT-TTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH-HHHCCCCCH
T ss_pred             -Hh-cCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHH-HHhCCcCCh
Confidence             22 344999999999999999988889999999986 777654                    222111 145777776


Q ss_pred             H-----H--HHHcCccceecCCC
Q 018384          203 A-----E--MMACGLATHYSVSE  218 (357)
Q Consensus       203 ~-----e--A~~~GLv~~vv~~~  218 (357)
                      +     +  +.+.|++|.+++++
T Consensus       233 e~lggae~h~~~sG~~d~vv~d~  255 (548)
T 2bzr_A          233 EELGGAHTHMAKSGTAHYAASGE  255 (548)
T ss_dssp             HHHHBHHHHHHTSSCCSEEESSH
T ss_pred             HhcccHHHHhhccCceeEEeCCH
Confidence            4     2  22699999999854

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.29  E-value=0.0011  Score=65.72  Aligned_cols=154  Identities=14%  Similarity=0.111  Sum_probs=95.0

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 018384           47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  125 (357)
Q Consensus        47 I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  125 (357)
                      |.-|+|. ...+++++....+.+.++.+.+. .+-+|.|.-.++ |..|.+-.             .........+++..
T Consensus       329 via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~G-~~~G~~~E-------------~~G~~~~~Ak~l~~  393 (522)
T 1x0u_A          329 IVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTPG-YVPGTDQE-------------YKGIIRHGAKMLYA  393 (522)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCSHHHH-------------HTTHHHHHHHHHHH
T ss_pred             EEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCCC-CCCchHHH-------------HHHHHHHHHHHHHH
Confidence            3444443 34589999999999999988754 467777765432 22222111             11122344556777


Q ss_pred             HhcCCCcEEEEEccceechhhhhhcc----CCeEEEeCceEEecccccccccCCCcHHHHHhhc-ChH-----H-HHHHH
Q 018384          126 LGTHLKPHVAILNGVTMGGGAGVSIP----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH-----L-GEFLA  194 (357)
Q Consensus       126 i~~~~kPvIa~v~G~a~GgG~~lal~----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g~-----~-a~~l~  194 (357)
                      +....+|.|+.|-|.|.|||+.....    +|++++.+++.+++-       .+-|+...+.+. +..     . ..++.
T Consensus       394 ~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~-------gpegaa~Il~r~~i~~~~d~~~~~~~l~  466 (522)
T 1x0u_A          394 FAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVT-------GPEGAVRILYRKEIQQASNPDDVLKQRI  466 (522)
T ss_dssp             HHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTSSSSSSSSSSSSSSHHHH
T ss_pred             HHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEec-------CHHHHHHHHhhhhhhcccCHHHHHHHHH
Confidence            88899999999999999998754444    999999888777653       222222222222 110     0 00111


Q ss_pred             --hcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          195 --LTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       195 --ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                        +.-..-++..+.+.|+||.|+++.++..
T Consensus       467 ~~y~~~~~~~~~~~~~G~iD~II~p~~tR~  496 (522)
T 1x0u_A          467 AEYRKLFANPYWAAEKGLVDDVIEPKDTRR  496 (522)
T ss_dssp             HHHHHHHSSSHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHhcCCHHHHHhcCCCcEeECHHHHHH
Confidence              0001135678999999999999876653

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.14  E-value=0.0065  Score=60.26  Aligned_cols=138  Identities=15%  Similarity=0.148  Sum_probs=87.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |.++-.+-.-+.-++.....+.+..+++.+.+.. +-+|.|.-+|     |..+.+-..        ....+.+.+....
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dSg-----GAR~qeg~~--------~l~g~~~~~~~~~  165 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDSG-----GARIQEGVD--------ALAGYGEIFLRNT  165 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC-----SBCGGGTHH--------HHHHHHHHHHHHH
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHcC-CCEEEEECCC-----CCCccchhH--------HHHHHHHHHHHHH
Confidence            4444444333677999999999999999888753 5667776544     333322110        1111222222222


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a  202 (357)
                        ......|+|+++.|+|.|||......||++|+.++ +.+++                    .|+...+. .+|+.++.
T Consensus       166 --~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~--------------------aGP~vi~~-~~ge~v~~  222 (527)
T 1vrg_A          166 --LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFI--------------------TGPNVIKA-VTGEEISQ  222 (527)
T ss_dssp             --HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHHH-HHCCCCCH
T ss_pred             --HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEe--------------------cCHHHHHH-HhCCCCCc
Confidence              22456999999999999999988889999999987 65433                    12221111 45677765


Q ss_pred             H-----HHH--HcCccceecCCC
Q 018384          203 A-----EMM--ACGLATHYSVSE  218 (357)
Q Consensus       203 ~-----eA~--~~GLv~~vv~~~  218 (357)
                      +     +..  +.|++|.+++++
T Consensus       223 e~lggae~~~~~~G~vd~vv~d~  245 (527)
T 1vrg_A          223 EDLGGAMVHNQKSGNAHFLADND  245 (527)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSH
T ss_pred             cccccHHHHhhcccceEEEecCH
Confidence            3     222  699999999864

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.10  E-value=0.0045  Score=61.55  Aligned_cols=142  Identities=15%  Similarity=0.121  Sum_probs=93.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCcccc-ccChHHHHHhhccCChHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCA-GGDIVSLYHFMNQGKLEECKDFFRTLYSF  122 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~-G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l  122 (357)
                      |.++..+..-+.-++.+...+.+..+++.+.+. .+-+|.|.-+|++... +.+.  +..   ....   .+.    ..-
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSgGARl~~q~~~--~~~---~~~~---~~i----~~~  189 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSGGANLPRQDEV--FPD---REHF---GRI----FFN  189 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCCBCGGGGGGT--SSS---TTST---THH----HHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCCCCccee--ecc---cccH---HHH----HHH
Confidence            444444444467789999999999999999876 3667777765544421 1110  000   0000   111    112


Q ss_pred             HHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeC-ceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCC
Q 018384          123 IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLN  201 (357)
Q Consensus       123 ~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~  201 (357)
                      ...+....+|+|++|.|+|.|||......||++|+.+ ++.+.+                    -|+...+ ..+|+.++
T Consensus       190 ~~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~--------------------aGP~vik-~~~ge~~~  248 (555)
T 3u9r_B          190 QANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFL--------------------AGPPLVK-AATGEVVS  248 (555)
T ss_dssp             HHHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBS--------------------SCHHHHH-HHHCCCCC
T ss_pred             HHHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEE--------------------ccHHHHH-HHhcCccC
Confidence            2344557899999999999999999999999998876 343332                    1222111 26889999


Q ss_pred             HHHH-------HHcCccceecCCCC
Q 018384          202 GAEM-------MACGLATHYSVSEK  219 (357)
Q Consensus       202 a~eA-------~~~GLv~~vv~~~~  219 (357)
                      +++.       ...|++|.++++++
T Consensus       249 ~e~LGGa~~h~~~sGv~d~v~~de~  273 (555)
T 3u9r_B          249 AEELGGADVHCKVSGVADHYAEDDD  273 (555)
T ss_dssp             HHHHHBHHHHHHTTCSCSEEESSHH
T ss_pred             hhhccchhhhhhccCceeEEeCCHH
Confidence            9998       78999999998655

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.85  E-value=0.0079  Score=59.63  Aligned_cols=155  Identities=13%  Similarity=0.096  Sum_probs=94.7

Q ss_pred             EEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           45 RMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        45 ~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      ..|.=|+|. ....++++-.....+.++.+++. .+-+|.|.-. ..|..|.+-..             ........+++
T Consensus       332 V~via~~~~~~~G~~~~~~~~Kaar~i~~a~~~-~~Plv~lvDt-pG~~~G~~~E~-------------~g~~~~~A~~~  396 (527)
T 1vrg_A          332 VGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEH-------------GGIIRHGAKLL  396 (527)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHHHHHH
T ss_pred             EEEEEEcCcccCCCCCHHHHHHHHHHHHHHhhc-CCCeEEEecC-CCCcCchhhHH-------------hHHHHHHHHHH
Confidence            334444544 33579999999999999888653 4566666543 23444432211             11233444577


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhcc----CCeEEEeCceEEecccccccccCCCcHHHHHhhcC-h----HH-H-HH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIP----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-G----HL-G-EF  192 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~-g----~~-a-~~  192 (357)
                      ..+....+|+|+.|-|.|.|||+.-...    +|++++.+++.++       +.++-|+...+.+.- .    .. . .+
T Consensus       397 ~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~  469 (527)
T 1vrg_A          397 YAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRK  469 (527)
T ss_dssp             HHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHH
T ss_pred             HHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHH
Confidence            7788899999999999999888754433    8988777776665       433334433333211 1    11 1 11


Q ss_pred             HH--hcCCCCCHHHHHHcCccceecCCCChh
Q 018384          193 LA--LTGAKLNGAEMMACGLATHYSVSEKLP  221 (357)
Q Consensus       193 l~--ltG~~i~a~eA~~~GLv~~vv~~~~l~  221 (357)
                      +.  +.-..-++..+.+.|+||.|+++.+..
T Consensus       470 ~~~~y~~~~~~p~~~~~~g~iD~II~p~~tR  500 (527)
T 1vrg_A          470 LIEEYKQQFANPYIAASRGYVDMVIDPRETR  500 (527)
T ss_dssp             HHHHHHHHTSSHHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHhhCCHHHHHHcCCCCeeeCHHHHH
Confidence            21  111235678899999999999986654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.84  E-value=0.0085  Score=59.36  Aligned_cols=155  Identities=15%  Similarity=0.049  Sum_probs=95.9

Q ss_pred             EEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           45 RMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        45 ~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      ..|.=|+|. ....++++-.....+.++.+++. .+-+|.|.-. ..|..|.+-..             ........+++
T Consensus       328 Vgvian~~~~~~G~~~~~~a~Kaar~i~~~~~~-~iPlv~lvDt-pGf~~G~~~E~-------------~Gi~~~~A~~l  392 (523)
T 1on3_A          328 VGIVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEY-------------GGIIRHGAKML  392 (523)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHHHHHH
T ss_pred             EEEEEecCCccCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeC-CCcCcchHHHH-------------hhHHHHHHHHH
Confidence            334445554 23479999999999999888653 4566655543 33555543221             12234455677


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhcc----CCeEEEeCceEEecccccccccCCCcHHHHHhhc-Ch----HH-H-HH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIP----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PG----HL-G-EF  192 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g----~~-a-~~  192 (357)
                      ..+....+|+|+.|-|.+.|||+.-...    +|++++.+++.++       +.++-|+...+.+. +.    .. . .+
T Consensus       393 ~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~  465 (523)
T 1on3_A          393 YAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAE  465 (523)
T ss_dssp             HHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHH
T ss_pred             HHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHH
Confidence            7888899999999999999988755544    7887777666665       44333444333322 11    11 1 11


Q ss_pred             HHh--cCCCCCHHHHHHcCccceecCCCChh
Q 018384          193 LAL--TGAKLNGAEMMACGLATHYSVSEKLP  221 (357)
Q Consensus       193 l~l--tG~~i~a~eA~~~GLv~~vv~~~~l~  221 (357)
                      +.-  .-..-++..+.+.|+||.|+++.+..
T Consensus       466 ~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR  496 (523)
T 1on3_A          466 KIEEYQNAFNTPYVAAARGQVDDVIDPADTR  496 (523)
T ss_dssp             HHHHHHHHHSSHHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHhhCCHHHHHhcCCCCEeeCHHHHH
Confidence            211  11124668899999999999986654

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.50  E-value=0.019  Score=57.09  Aligned_cols=155  Identities=16%  Similarity=0.146  Sum_probs=94.3

Q ss_pred             EEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHH
Q 018384           46 MAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  124 (357)
Q Consensus        46 ~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (357)
                      .|.=|+|. ....++++-.....+.++.+++. .+-+|.|.-. ..|..|.+-.+             ........+++.
T Consensus       350 gvian~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~Gf~~G~~~E~-------------~Gi~~~ga~~l~  414 (548)
T 2bzr_A          350 GIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEY-------------NGIIRRGAKLLY  414 (548)
T ss_dssp             EEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHHHHHHH
T ss_pred             EEEEECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-cCCCCChHHHH-------------hhHHHHHHHHHH
Confidence            34444544 33589999999999999888754 4556655433 33555543221             112233455677


Q ss_pred             HHhcCCCcEEEEEccceechhhhhhc----cCCeEEEeCceEEecccccccccCCCcHHHHHhhc-ChH------H-H--
Q 018384          125 LLGTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH------L-G--  190 (357)
Q Consensus       125 ~i~~~~kPvIa~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g~------~-a--  190 (357)
                      .+....+|+|+.|-|.|.|||+.-..    .+|++++.+++.++.       .++-|+...+.+. +..      . +  
T Consensus       415 a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V-------mgpegaa~Il~r~~~~~~~~~g~~~~~~  487 (548)
T 2bzr_A          415 AYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDIDKL  487 (548)
T ss_dssp             HHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTCCC----------CHHH
T ss_pred             HHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe-------cCHHHHHHHHhhhHHhhhhcccccHHHH
Confidence            78889999999999999998875443    389988887776653       3333344333332 110      1 1  


Q ss_pred             -HHHHh--cCCCCCHHHHHHcCccceecCCCChhH
Q 018384          191 -EFLAL--TGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       191 -~~l~l--tG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                       .++.-  .-..-++..+.+.|+||.|+++.+...
T Consensus       488 ~~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~  522 (548)
T 2bzr_A          488 RLRLQQEYEDTLVNPYVAAERGYVGAVIPPSHTRG  522 (548)
T ss_dssp             HHHHHHHHHHHHSBSHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHHhhCCHHHHHhcCCCceeeCHHHHHH
Confidence             11111  001134577999999999999866543

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.47  E-value=0.023  Score=56.87  Aligned_cols=161  Identities=13%  Similarity=0.021  Sum_probs=93.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |.++-.+..-+.-++.+...+.+..+++.+.+.. +-+|.|.-+|+++..  +-.....     ......+.+    .-.
T Consensus       108 V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dSgGArl~--~qe~~~~-----~l~~~g~if----~~~  175 (588)
T 3gf3_A          108 VYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNCSGVEFP--NQDKVYP-----NRRGGGTPF----FRN  175 (588)
T ss_dssp             EEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECCCCBCGG--GHHHHSS-----STTSTTHHH----HHH
T ss_pred             EEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcCCCcCcc--ccccccc-----chhhHHHHH----HHH
Confidence            3444444433667899999999999999988654 667777765554441  0011100     000000111    112


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccc--cccCCCcHHHHHhhcC---hHH-HHHHHhcC
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI--GFHPDAGASFYLSHLP---GHL-GEFLALTG  197 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~--Gl~p~~g~~~~l~r~~---g~~-a~~l~ltG  197 (357)
                      ..+....+|+|+++-|.|.|||.-.++++|++++.+++.+++.-..+  |+.|.+  . +.+.-+   ... ..+-..+.
T Consensus       176 ~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g--~-~~~~~~~~~~~~~~ge~~vs~  252 (588)
T 3gf3_A          176 SELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG--Y-IDDEAAEQIIAAQIENSKLKV  252 (588)
T ss_dssp             HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc--c-ccccchhhhhhhhccccccCh
Confidence            33455689999999999999988668888998999888888754331  211111  0 011111   111 11212467


Q ss_pred             CCCCHHHHH--HcCccceecCCCC
Q 018384          198 AKLNGAEMM--ACGLATHYSVSEK  219 (357)
Q Consensus       198 ~~i~a~eA~--~~GLv~~vv~~~~  219 (357)
                      +.+.+.+..  ..|++|.++++|+
T Consensus       253 eeLGGa~~h~~~sGv~d~~a~de~  276 (588)
T 3gf3_A          253 PAPGSVPIHYDETGFFREVYQNDL  276 (588)
T ss_dssp             CCTTBHHHHTTTSCCSCEEESSHH
T ss_pred             hhccchhhhccccccceEEeCCHH
Confidence            777777776  5999999998654

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=96.41  E-value=0.081  Score=53.00  Aligned_cols=144  Identities=15%  Similarity=0.097  Sum_probs=94.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      ...++++-.....+.++.++. .++-+|.|.-. ..|..|.+-.             .........+++..+..+.+|+|
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt-pGf~~G~~~E-------------~~Gi~~~gA~~~~a~a~a~vP~i  448 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TGIDVGNDAE-------------KAELLGLGQSLIYSIQTSHIPQF  448 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCCCEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC-CCCCCcHHHH-------------HHHHHHHHHHHHHHHHhCCCCEE
Confidence            357999999999999987664 45677777654 3455554221             12234556678889999999999


Q ss_pred             EEEccceechhhhhhcc-----C--CeEEEeCceEEecccccccccCCCcHHHHHhhcC-hH----------H-H--HHH
Q 018384          135 AILNGVTMGGGAGVSIP-----G--TFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-GH----------L-G--EFL  193 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~-----~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~-g~----------~-a--~~l  193 (357)
                      +.|-|.+.|||+ ++++     +  |++++.+++.++       +.++-|....+.+.- ..          . +  .++
T Consensus       449 tvI~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~  520 (587)
T 1pix_A          449 EITLRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNL  520 (587)
T ss_dssp             EEECSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             EEEcCCCccHHH-HHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHH
Confidence            999999998885 4444     4  888777777766       333333333333211 10          0 0  001


Q ss_pred             H--hcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          194 A--LTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       194 ~--ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                      .  +. +..++..|.+.|+||.|+++.+...
T Consensus       521 ~~~y~-~~~~p~~aa~~g~iD~VI~p~~tR~  550 (587)
T 1pix_A          521 IQAFY-TKSRPKVCAELGLVDEIVDMNKIRG  550 (587)
T ss_dssp             HHHHH-HTTSHHHHHHHTSSSEECCTTTHHH
T ss_pred             HHHHH-HhCCHHHHHhcCCCccccCHHHHHH
Confidence            0  11 1478899999999999999877654

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=96.35  E-value=0.092  Score=51.93  Aligned_cols=158  Identities=15%  Similarity=0.165  Sum_probs=99.2

Q ss_pred             CCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHH
Q 018384           42 ANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (357)
Q Consensus        42 ~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (357)
                      |.-..|.=|+|. ....++++......+.++.+++. .+-+|.|.-..+ |..|.+-.             .........
T Consensus       331 G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtpG-f~~G~~~E-------------~~gi~~~~A  395 (530)
T 3iav_A          331 GRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVPG-FLPGVDQE-------------HDGIIRRGA  395 (530)
T ss_dssp             TEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCCHHHH-------------HTTHHHHHH
T ss_pred             CEEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCCC-CCccHHHH-------------HhhHHHHHH
Confidence            333445555654 23589999999999999877754 466776654432 65554322             123345566


Q ss_pred             HHHHHHhcCCCcEEEEEccceechhhhhhcc-----CCeEEEeCceEEecccccccccCCCcHHHHHhhc-Ch------H
Q 018384          121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIP-----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PG------H  188 (357)
Q Consensus       121 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~-----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g------~  188 (357)
                      +++..+....+|+|+.|-|.++|||+ ++++     +|++++.+++.++.       .++-|+...+.+. +.      .
T Consensus       396 k~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~  467 (530)
T 3iav_A          396 KLIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAE  467 (530)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCH
T ss_pred             HHHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHH
Confidence            78888999999999999999998776 4443     79988888776664       3333333333221 10      0


Q ss_pred             H-HHHHH--hcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          189 L-GEFLA--LTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       189 ~-a~~l~--ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                      . -.++.  +.-+.-++..|.+.|+||.|+++.+...
T Consensus       468 ~~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~  504 (530)
T 3iav_A          468 ATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRR  504 (530)
T ss_dssp             HHHHHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHhcCCCCcccCHHHHHH
Confidence            0 11111  1111236677889999999999877653

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.26  E-value=0.035  Score=54.86  Aligned_cols=157  Identities=14%  Similarity=0.128  Sum_probs=97.4

Q ss_pred             CCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHH
Q 018384           42 ANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  120 (357)
Q Consensus        42 ~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~  120 (357)
                      |.-..|.=|+|. ....++++......+.++.+++. ++-+|.|.-.. .|..|.+-.             .........
T Consensus       337 G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDtp-Gf~~G~~~E-------------~~Gi~~~gA  401 (531)
T 3n6r_B          337 GRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDVP-GFLPGTSQE-------------YGGVIKHGA  401 (531)
T ss_dssp             TEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-SBCCSHHHH-------------HTTHHHHHH
T ss_pred             CEEEEEEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCCC-CCCCCHHHH-------------HhhHHHHHH
Confidence            333344455554 23579999999999999877654 46666665432 344443221             122345556


Q ss_pred             HHHHHHhcCCCcEEEEEccceechhhhhhcc----CCeEEEeCceEEecccccccccCCCcHHHHHhh-cCh----H--H
Q 018384          121 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIP----GTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPG----H--L  189 (357)
Q Consensus       121 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~~g----~--~  189 (357)
                      +++..+....+|+|+.|-|.++|||+.-...    +|++++.+++.++.       .++-|+...+.+ -+.    .  .
T Consensus       402 k~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V-------m~pegaa~Il~r~~~~~~~~~~~~  474 (531)
T 3n6r_B          402 KLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV-------MGAKGATEIIHRGDLGDPEKIAQH  474 (531)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHCCTTTTSTTHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec-------CCHHHHHHHHhcccccchhHHHHH
Confidence            7888899999999999999999988744433    89988887776653       333333333322 121    1  1


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                      ..++  .-+.-++..|.+.|+||.|+++.+-..
T Consensus       475 ~~~y--~~~~~~p~~aa~~~~vD~vIdP~~TR~  505 (531)
T 3n6r_B          475 TADY--EERFANPFVASERGFVDEVIQPRSTRK  505 (531)
T ss_dssp             HHHH--HHHHSSSHHHHHHTSSSEECCGGGHHH
T ss_pred             HHHH--HHHhcCHHHHHhcCccCcccCHHHHHH
Confidence            1111  111235567889999999999877653

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=94.68  E-value=0.36  Score=48.26  Aligned_cols=141  Identities=13%  Similarity=0.160  Sum_probs=90.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      ..++++-...-.+.++..++. ++-+|.|.-. ..|..|.+-.             .....+...+++.++..+.+|+|+
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDt-pGf~~G~~aE-------------~~Gi~~~gAk~l~a~a~a~VP~it  451 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDT-TGIDVGDEAE-------------KAELLGLGQSLIYSIENSKLPSLE  451 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHH-------------HTTHHHHHHHHHHHHHHHCSCEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecC-CCCCCCHHHH-------------HHHHHHHHHHHHHHHHhCCCCEEE
Confidence            468999999999999888764 4677776644 3455554322             122345556788899999999999


Q ss_pred             EEccceechhhhhhccC-------CeEEEeCceEEecccccccccCCCcHHHHHh-hcC------h-----------HHH
Q 018384          136 ILNGVTMGGGAGVSIPG-------TFRVACGKTVFATPETLIGFHPDAGASFYLS-HLP------G-----------HLG  190 (357)
Q Consensus       136 ~v~G~a~GgG~~lal~~-------D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-r~~------g-----------~~a  190 (357)
                      .|-|.+.|||. +++++       |++++.+++.++       +.++-|+...+. +.+      |           ...
T Consensus       452 vI~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~s-------Vm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (588)
T 3gf3_A          452 ITIRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYY-------VMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI  523 (588)
T ss_dssp             EESSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred             EEcCCccHHHH-HHhcccccCCccceEEECCCceEE-------eCCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHH
Confidence            99999988776 44443       266666666655       443333333332 211      1           001


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                      .++-   +..++-.|-+.|+||.|+++.+...
T Consensus       524 ~~y~---~~~~p~~aA~r~~vD~VIdP~~TR~  552 (588)
T 3gf3_A          524 QMYT---DKSRPKYCTEKGMVDEIVDMTEVRP  552 (588)
T ss_dssp             HHHH---HTTSHHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHH---HhCCHHHHHhcCCCCeeeCHHHHHH
Confidence            1111   1247888899999999999877654

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=92.27  E-value=0.73  Score=45.72  Aligned_cols=95  Identities=12%  Similarity=0.100  Sum_probs=67.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      ..++++......+.++.+++. .+-+|.|.-.+ .|..|.+-..             ....+...+++..+....+|+|+
T Consensus       366 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp-Gf~~G~~~E~-------------~Gi~~~gAk~~~a~~~a~vP~it  430 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQR-GIPLLFLQNIT-GFMVGQKYEA-------------GGIAKHGAKLVTAVACARVPKFT  430 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC-CBCCSHHHHH-------------TTHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CccCHHHHHHHHHHHHHHhcC-CCCEEEEecCc-CCCCCHHHHH-------------HHHHHHHHHHHHHHHhCCCCEEE
Confidence            579999999999988887753 46777776543 3444432211             12234456678889999999999


Q ss_pred             EEccceechhhhhh----ccCCeEEEeCceEEec
Q 018384          136 ILNGVTMGGGAGVS----IPGTFRVACGKTVFAT  165 (357)
Q Consensus       136 ~v~G~a~GgG~~la----l~~D~~ia~~~a~f~~  165 (357)
                      .|-|.++|||..-.    +.+|++++.+++.++.
T Consensus       431 vi~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~V  464 (555)
T 3u9r_B          431 VLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGV  464 (555)
T ss_dssp             EEEEEEETTHHHHTTCGGGCCSEEEECTTCEEES
T ss_pred             EEeCCccchhhHhhcCccCCCCeEEEcCCcEEEc
Confidence            99999998875433    2479988877777764

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=91.56  E-value=0.11  Score=53.08  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=32.0

Q ss_pred             CCCcEEEEEccceechhhhhhccCCeEEEeCceEE
Q 018384          129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF  163 (357)
Q Consensus       129 ~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f  163 (357)
                      ...|+|++|.|+|.|||.-+...||++|+.+++.+
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~i  279 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPI  279 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCE
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceE
Confidence            57899999999999999999999999999998643

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=90.30  E-value=0.18  Score=51.98  Aligned_cols=37  Identities=11%  Similarity=0.075  Sum_probs=33.5

Q ss_pred             CCCcEEEEEccceechhhhhhccCCeEEEeCceEEec
Q 018384          129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT  165 (357)
Q Consensus       129 ~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~  165 (357)
                      ..+|+|+.|.|.|.|||..++..||++|+.+++.+.+
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~l  294 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIIL  294 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEES
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEe
Confidence            4699999999999999999999999999999876554

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=90.08  E-value=2  Score=43.94  Aligned_cols=94  Identities=14%  Similarity=0.146  Sum_probs=65.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      ..++++-.....+.++.+++..++-+|.|.-. ..|..|.+-.             .........+++.++..+.+|+|+
T Consensus       447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDt-pGf~~G~~aE-------------~~Gi~k~gAkll~A~a~a~VP~it  512 (758)
T 3k8x_A          447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRDM-------------FNEVLKYGSFIVDALVDYKQPIII  512 (758)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTSCCCEEECCCC-CEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCEEEEecC-CCCCCCHHHH-------------HccHHHHHHHHHHHHHhCCCCEEE
Confidence            47899999999999998887345666666543 4566665322             122345556788899999999999


Q ss_pred             EEc--cceechhhhhhcc----CCe--EEEeCceEEe
Q 018384          136 ILN--GVTMGGGAGVSIP----GTF--RVACGKTVFA  164 (357)
Q Consensus       136 ~v~--G~a~GgG~~lal~----~D~--~ia~~~a~f~  164 (357)
                      .|-  |.+.||++ ++++    +|+  ++|.+++.++
T Consensus       513 VI~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~is  548 (758)
T 3k8x_A          513 YIPPTGELRGGSW-VVVDPTINADQMEMYADVNARAG  548 (758)
T ss_dssp             EECTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEE
T ss_pred             EEecCCccchHHH-HHhCcccCCCHHHHhcCCCCEEE
Confidence            998  99988777 5554    555  6555555544

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=87.54  E-value=5  Score=41.36  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=65.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      ..++++-.....+.++.++. ..+-+|.|.-. ..|..|.+-.             .........+++.++..+.+|+|+
T Consensus       462 G~l~~~~a~KaarfI~~cd~-f~iPlv~LvDt-pGf~~G~~aE-------------~~Gi~~~gAkll~A~a~a~VP~it  526 (793)
T 2x24_A          462 QVWFPDSAYKTAQAIKDFNR-EKLPLMIFANW-RGFSGGMKDM-------------YDQVLKFGAYIVDGLRKYRQPVLI  526 (793)
T ss_dssp             TEECHHHHHHHHHHHHHHHT-TTCCEEEECCB-CEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CcccHHHHHHHHHHHHHhcc-CCCCEEEEecC-CCCCCCHHHH-------------HhhHHHHHHHHHHHHHhcCCCEEE
Confidence            47999999999999999875 45666666543 4566654321             122345566788899999999999


Q ss_pred             EE--ccceechhhhhh---ccCCe--EEEeCceEEec
Q 018384          136 IL--NGVTMGGGAGVS---IPGTF--RVACGKTVFAT  165 (357)
Q Consensus       136 ~v--~G~a~GgG~~la---l~~D~--~ia~~~a~f~~  165 (357)
                      .|  .|.+.||++.+.   +..|+  ++|.+++.++.
T Consensus       527 vI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V  563 (793)
T 2x24_A          527 YIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRASV  563 (793)
T ss_dssp             EECTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred             EEecCCcccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence            99  898877665433   34566  56666665553

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=87.36  E-value=0.49  Score=42.47  Aligned_cols=93  Identities=13%  Similarity=-0.013  Sum_probs=58.2

Q ss_pred             HhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHH
Q 018384          182 LSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI  260 (357)
Q Consensus       182 l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (357)
                      ..+.+... |.++-+-.+.++..+..    +.      +   .++   +++..+|.++...|+.++..............
T Consensus       166 tg~~i~A~eA~~~GLV~~vv~~~~~~----~~------~---~a~---~la~~~p~a~~~~K~~l~~~~~~~~~~~~~e~  229 (267)
T 3hp0_A          166 MTKPISVQEASEWGLIDAFDAESDVL----LR------K---HLL---RLRRLNKKGIAHYKQFMSSLDHQVSRAKATAL  229 (267)
T ss_dssp             HCCCBCHHHHHHHTSSSCBCSCTTHH----HH------H---HHH---HHTTSCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHCCCcceecCCHHHH----HH------H---HHH---HHHhCCHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            34566666 89998888888653332    11      1   233   34567899999999988765432222233445


Q ss_pred             HHHHHHc-CCCCHHHHHHHHhcccCCCCCch
Q 018384          261 DIVDKCF-GLDTVEEIIDSLESEASLINDPW  290 (357)
Q Consensus       261 ~~~~~~~-~~~~~e~i~~~l~~~~~~~~~~~  290 (357)
                      ..+..++ +.+..|++.+|+||+.|.+.+.|
T Consensus       230 ~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~~~  260 (267)
T 3hp0_A          230 TANQDMFSDPQNQMGIIRYVETGQFPWEDQE  260 (267)
T ss_dssp             HHHHHHTTSTTHHHHHHHHTTSCCC------
T ss_pred             HHHHHHhCCHHHHHHHHHHHhcCCCCCCCCC
Confidence            5677788 57888899999999999876654

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=85.27  E-value=0.82  Score=42.80  Aligned_cols=61  Identities=15%  Similarity=0.143  Sum_probs=43.9

Q ss_pred             HhhhcCCHHHHHHHHHHhhccCCC--ChhhHHHHHHHHHHHc-CCCCHHHHHHHH--hcccCCCCC
Q 018384          228 GKLVTDDPSVIEACLEKYSDLVYP--DKNSVIHRIDIVDKCF-GLDTVEEIIDSL--ESEASLIND  288 (357)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~e~i~~~l--~~~~~~~~~  288 (357)
                      ..+...+|.+++..|+.+++....  ....+..+..++..++ +.|..|++.++|  |||.|++.+
T Consensus       259 ~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~p  324 (353)
T 4hdt_A          259 DLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRP  324 (353)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCSS
T ss_pred             HHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCCC
Confidence            457789999999999998765542  2444566677888888 568888888999  999887653

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=84.55  E-value=0.9  Score=40.46  Aligned_cols=92  Identities=8%  Similarity=0.020  Sum_probs=66.5

Q ss_pred             hhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCC-hhhHHHHH
Q 018384          183 SHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD-KNSVIHRI  260 (357)
Q Consensus       183 ~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  260 (357)
                      .+.+... |.++-+-.+.++.++..+           ...+.+..+   +..+|.++...|+.++...... ......+.
T Consensus       163 g~~i~a~eA~~~GLv~~vv~~~~l~~-----------~a~~~a~~l---a~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~  228 (258)
T 4fzw_A          163 GESITAQQAQQAGLVSDVFPSDLTLE-----------YALQLASKM---ARHSPLALQAAKQALRQSQEVALQAGLAQER  228 (258)
T ss_dssp             CCCEEHHHHHHHTSCSEEECTTTHHH-----------HHHHHHHHH---TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCcCcHHHHHHCCCeeEEeCchHHHH-----------HHHHHHHHH---HhCCHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            4566666 899988888888776653           233455555   5678999999999887665533 34455566


Q ss_pred             HHHHHHc-CCCCHHHHHHHHhcccCCCCC
Q 018384          261 DIVDKCF-GLDTVEEIIDSLESEASLIND  288 (357)
Q Consensus       261 ~~~~~~~-~~~~~e~i~~~l~~~~~~~~~  288 (357)
                      ..+..++ +.+..|++.+|+|||.|++.+
T Consensus       229 ~~~~~~~~s~d~~Eg~~AF~eKR~P~f~G  257 (258)
T 4fzw_A          229 QLFTLLAATEDRHEGISAFLQKRTPDFKG  257 (258)
T ss_dssp             HHHHHHHTSHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence            7788888 567788899999999887754

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=83.72  E-value=0.95  Score=40.13  Aligned_cols=93  Identities=11%  Similarity=0.009  Sum_probs=66.2

Q ss_pred             HhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCC-hhhHHHH
Q 018384          182 LSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD-KNSVIHR  259 (357)
Q Consensus       182 l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  259 (357)
                      ..+.+... |.++-+-.+.++.+++.+           ...+.+..+   +..+|.++...|+.++...... ......+
T Consensus       158 tg~~i~A~eA~~~GLv~~vv~~~~l~~-----------~a~~~a~~l---a~~~~~a~~~~K~~~~~~~~~~~~~~l~~e  223 (254)
T 3hrx_A          158 LSPRLSAEEALALGLVHRVVPAEKLME-----------EALSLAKEL---AQGPTRAYALTKKLLLETYRLSLTEALALE  223 (254)
T ss_dssp             HCCCEEHHHHHHHTSCSEEECGGGHHH-----------HHHHHHHHH---HTSCHHHHHHHHHHHHHGGGSCHHHHHHHH
T ss_pred             cCcccCHHHHHHCCCeEEecCcHHHHH-----------HHHHHHHHh---hccchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34566666 899999888888877653           233455555   4678889998888887665433 3344555


Q ss_pred             HHHHHHHc-CCCCHHHHHHHHhcccCCCCC
Q 018384          260 IDIVDKCF-GLDTVEEIIDSLESEASLIND  288 (357)
Q Consensus       260 ~~~~~~~~-~~~~~e~i~~~l~~~~~~~~~  288 (357)
                      ...+..++ +.+..|++.+|+|||.|++.+
T Consensus       224 ~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~G  253 (254)
T 3hrx_A          224 AVLQGQAGQTQDHEEGVRAFREKRPPRFQG  253 (254)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHhCCCCCCCCC
Confidence            66777788 578888999999999887654

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=83.15  E-value=1.6  Score=41.61  Aligned_cols=61  Identities=7%  Similarity=-0.038  Sum_probs=46.0

Q ss_pred             HhhhcCCHHHHHHHHHHhhccCCCC-hhhHHHHHHHHHHHc-CCCCHHHHHHHH-hc-ccCCCCC
Q 018384          228 GKLVTDDPSVIEACLEKYSDLVYPD-KNSVIHRIDIVDKCF-GLDTVEEIIDSL-ES-EASLIND  288 (357)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~e~i~~~l-~~-~~~~~~~  288 (357)
                      .++...+|.+++..|+.++...... ...+..+......++ +.+..|++.+++ +| +.|++.+
T Consensus       312 ~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGvrAflidKdr~P~w~~  376 (407)
T 3ju1_A          312 ATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDFCEGVRALLIDKDKQPKWQF  376 (407)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTSCCCCCCCSS
T ss_pred             HHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCcCCCCCC
Confidence            5678899999999999998766543 334555667777888 578888888998 77 8776544

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=81.86  E-value=1.3  Score=39.76  Aligned_cols=92  Identities=7%  Similarity=-0.047  Sum_probs=64.5

Q ss_pred             hhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCC-hhhHHHHH
Q 018384          183 SHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD-KNSVIHRI  260 (357)
Q Consensus       183 ~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  260 (357)
                      .+.+... |.++-|-.+.++.++..+           ...+.++.+   +..+|.++...|+.++...... ......+.
T Consensus       179 g~~i~A~eA~~~GLv~~vv~~~~l~~-----------~a~~~a~~l---a~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~  244 (274)
T 4fzw_C          179 GNQLSAEQAHEWGMIWQVVDDETLAD-----------TAQQLARHL---ATQPTFGLGLIKQAINSAETNTLDTQLDLER  244 (274)
T ss_dssp             CCCEEHHHHHHTTSSSEEECGGGHHH-----------HHHHHHHHH---TTSCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             CCcCCHHHHHHCCCceEEeChHHHHH-----------HHHHHHHHH---HcCCHHHHHHHHHHHHHhhhCCHHHHHHHHH
Confidence            4556666 888888888888777653           234455655   5678999999999887665543 33344556


Q ss_pred             HHHHHHc-CCCCHHHHHHHHhcccCCCCC
Q 018384          261 DIVDKCF-GLDTVEEIIDSLESEASLIND  288 (357)
Q Consensus       261 ~~~~~~~-~~~~~e~i~~~l~~~~~~~~~  288 (357)
                      ..+..++ +.+..|++.+|+|||.|++..
T Consensus       245 ~~~~~~~~s~d~~Egv~AF~eKR~P~f~G  273 (274)
T 4fzw_C          245 DYQRLAGRSADYREGVSAFLAKRSPQFTG  273 (274)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHC-CCCCCCC
T ss_pred             HHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence            6777777 577888899999999887754

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=80.52  E-value=1.7  Score=38.86  Aligned_cols=87  Identities=13%  Similarity=0.077  Sum_probs=58.7

Q ss_pred             hhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHH
Q 018384          183 SHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (357)
Q Consensus       183 ~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (357)
                      .+.+... |.++-|-.+...-++|.+               .++.   ++..+|.++...|+.++.... ..........
T Consensus       175 G~~i~A~eA~~~GLV~~v~~~~~a~~---------------~A~~---la~~~p~a~~~~K~~l~~~~~-~~~~~~~e~~  235 (264)
T 3he2_A          175 AEKLTAEIALHTGMANRIGTLADAQA---------------WAAE---IARLAPLAIQHAKRVLNDDGA-IEEAWPAHKE  235 (264)
T ss_dssp             CCCEEHHHHHHHTSCSEECCHHHHHH---------------HHHH---HHTSCHHHHHHHHHHHHTSSC-SCCCCHHHHH
T ss_pred             CCCccHHHHHHCCCeEEEecHHHHHH---------------HHHH---HHcCCHHHHHHHHHHHHccCC-HHHHHHHHHH
Confidence            3556656 888877777765444332               3333   356789999999998887632 2233444556


Q ss_pred             HHHHHc-CCCCHHHHHHHHhcccCCCCC
Q 018384          262 IVDKCF-GLDTVEEIIDSLESEASLIND  288 (357)
Q Consensus       262 ~~~~~~-~~~~~e~i~~~l~~~~~~~~~  288 (357)
                      .+..+| +.+..|++.+|+||+.|.+.+
T Consensus       236 ~~~~~~~s~d~~Eg~~AF~ekR~P~f~g  263 (264)
T 3he2_A          236 LFDKAWGSQDVIEAQVARMEKRPPKFQG  263 (264)
T ss_dssp             HHHHHHTSHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHhcCCCCCCCC
Confidence            677777 567889999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	357
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	9e-28
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	1e-18
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	5e-15
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	5e-14
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	2e-13
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	6e-12
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	1e-10
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	7e-10
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	1e-08
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	7e-07
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	9e-07
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	1e-05
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	2e-05
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	6e-05
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	3e-04

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  107 bits (268), Expect = 9e-28
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 7/162 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP ALNAL   +  +LN+  + +E DP +G + + G  +AF AG DI  + +      
Sbjct: 22  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
                 +     S    +    KP +A +NG  +GGG  +++      A  K  F  PE 
Sbjct: 78  --FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEI 135

Query: 169 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACG 209
           L+G  P AG +  L+   G  L   + LTG +++  +    G
Sbjct: 136 LLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 177

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 82.1 bits (201), Expect = 1e-18
 Identities = 47/167 (28%), Positives = 68/167 (40%), Gaps = 1/167 (0%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
            LN P   N L+  M   L +     E DP +  V + G G+AF AG D+  L      G
Sbjct: 13  FLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELG 72

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             EE      +L    + + T+ KP VA +NG  + GGAG+++     V   +      E
Sbjct: 73  A-EENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTE 131

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214
             IGF     +   +  +     + L LTG  +   E  A GL    
Sbjct: 132 VKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.1 bits (175), Expect = 5e-15
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 7/147 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           LNRP   NA+N     +L + F+    D +   V + G+G+ F +G D++ +   + Q  
Sbjct: 19  LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78

Query: 109 L-------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
                      +D          ++    KP +A ++G  +GGG  +      R      
Sbjct: 79  GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138

Query: 162 VFATPETLIGFHPDAGASFYLSHLPGH 188
            F   E  +G   D G    L  + G+
Sbjct: 139 FFQVKEVDVGLAADVGTLQRLPKVIGN 165

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (167), Expect = 5e-14
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 3/170 (1%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           +NR    N+L+ N+   L+K   A ++D  +  + ++         G          +  
Sbjct: 21  INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGAD---LKERAKMS 77

Query: 109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 168
             E   F   + + I  +     P +A ++G+ +GGG  +++    RVA         ET
Sbjct: 78  SSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVET 137

Query: 169 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSE 218
            +   P  G +  L    G       +  A++   +         + + +
Sbjct: 138 KLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 187

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 2e-13
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
           + NRP   NA+NT M  ++ +  KA   D +I  V + G+G  + +G D+ +       G
Sbjct: 17  MFNRPKKKNAINTEMYHEIMRALKAASKDDSIITV-LTGNGDYYSSGNDLTNFTDIPPGG 75

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             E+ K+    L  F+       KP +A++NG  +G    +        A  +  F TP 
Sbjct: 76  VEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPF 135

Query: 168 TLIGFHPDAGASFYLSH 184
           + +G  P+  +S+    
Sbjct: 136 SHLGQSPEGCSSYTFPK 152

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 63.2 bits (152), Expect = 6e-12
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 14/109 (12%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN--- 105
            NRP   NA   +   +L ++       P++G V + G+G +   GG             
Sbjct: 35  FNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRG 94

Query: 106 -----------QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMG 143
                         ++  +     +     L+    K  + ++NG   G
Sbjct: 95  RSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAG 143

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.3 bits (142), Expect = 1e-10
 Identities = 26/181 (14%), Positives = 46/181 (25%), Gaps = 9/181 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK 108
           L  P  LNAL       L +L +  + + ++ F  ++ SGR F +G D   +        
Sbjct: 20  LINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDT 79

Query: 109 LEECK-------DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 161
            +          +F             H K  +  LNG  +G  A +        +    
Sbjct: 80  NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK 139

Query: 162 VFATPETLIGFHPD--AGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK 219
           V+                          +      +         M   G  +       
Sbjct: 140 VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPS 199

Query: 220 L 220
            
Sbjct: 200 S 200

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 56.7 bits (135), Expect = 7e-10
 Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 1/141 (0%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-QG 107
           +  P   NAL+     ++       E D ++G V + G+  AFCAG  +  +       G
Sbjct: 18  IKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAG 77

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
             +  +      +  I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137

Query: 168 TLIGFHPDAGASFYLSHLPGH 188
             IG   D   S+ L+ + G 
Sbjct: 138 HTIGIGNDTATSYSLARIVGM 158

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 46/281 (16%), Positives = 86/281 (30%), Gaps = 28/281 (9%)

Query: 50  NRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKL 109
            +  ++N  N     +L +   A + D ++  V +      F  G DI            
Sbjct: 24  LKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDA 83

Query: 110 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL 169
           E                     P VA +NG+ +GGG  + +   FRV         PE  
Sbjct: 84  ELI-AGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVK 142

Query: 170 IGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGK 229
           +G +P  G +  L  L G                +     +A+      +  L    +  
Sbjct: 143 LGIYPGFGGTVRLPRLIGV---------------DNAVEWIASGKENRAEDALKVSAVDA 187

Query: 230 LVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDP 289
           +VT D  +  A L+     +  + +    R   ++K                E  +  + 
Sbjct: 188 VVTAD-KLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAI----------EQMMAFET 236

Query: 290 WCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR 330
             G          P  ++  +++I++      D+ L  E  
Sbjct: 237 AKGFVAGQAGPNYPAPVEA-IKTIQKAANFGRDKALEVEAA 276

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 7e-07
 Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 1/167 (0%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
           +  R +  NALNT +  ++     +   D +   +         C       + H  N  
Sbjct: 17  LSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDR 76

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 167
                 +   T+ +F+       KP V  +NG  +G GA +        A  K  F TP 
Sbjct: 77  N-TASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPY 135

Query: 168 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 214
           T  G  PD  +S     + G       L   +   A           
Sbjct: 136 TTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 182

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 9e-07
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 35  QVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFC 92
           +VLVE  A + +A+     P  +N+L+     +L    +  END +   V +        
Sbjct: 3   RVLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVF 61

Query: 93  AGGDIVSLYHFMNQGKLEECKDFFRTLY 120
           + G  ++     +           + L+
Sbjct: 62  SAGLDLTEMCGRSPAHYAGYWKAVQELW 89

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 7/58 (12%), Positives = 20/58 (34%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106
           L+ P+  N  +  +   +         D ++  V + G      + G   +    +++
Sbjct: 15  LDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSR 72

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 13/82 (15%), Positives = 24/82 (29%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGG 95
           + +E      +  ++         +    +L   F     D     V + G+G +FC   
Sbjct: 15  IRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEI 74

Query: 96  DIVSLYHFMNQGKLEECKDFFR 117
           D  S          E   +  R
Sbjct: 75  DFTSFNLGTPHDWDEIIFEGQR 96

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG 107
           I  R   LNA+   +   L ++++  E    +  V ++G G  F AGG    +       
Sbjct: 23  ITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASH 82

Query: 108 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 144
           +       F      +       +P VA +  V +G 
Sbjct: 83  E--ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGA 117

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 9/58 (15%), Positives = 15/58 (25%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQ 106
            N    LNAL+      L +             +    SG    + G  +       +
Sbjct: 19  FNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGR 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	98.3
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	98.29
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	98.19
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	98.04
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	98.0
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.86
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.7
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.66
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.45
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.44
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.31
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.15
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.69
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.65
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.49
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.23
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	95.71
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	93.82
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	92.97
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	87.7
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	86.88
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	80.73
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	80.35

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-56  Score=409.73  Aligned_cols=253  Identities=21%  Similarity=0.237  Sum_probs=233.5

Q ss_pred             CCceEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHH
Q 018384           33 CNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln-~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      ++.|.++++++|++|++| ||++.|++|.+|+.+|.++++.++.|+ +++|||||.|++||+|+|++++...........
T Consensus         1 y~~i~v~~~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d~-~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   79 (258)
T d2fw2a1           1 YRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTA   79 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSS-CSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHH
T ss_pred             CceEEEEEECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCccccccccccchhhhcccccccch
Confidence            467999999999999997 799999999999999999999999874 699999999999999999999876544444444


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-H
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  190 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a  190 (357)
                      ..++...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        80 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a  159 (258)
T d2fw2a1          80 SLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASA  159 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred             hhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcccc
Confidence            566777888999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCC
Q 018384          191 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  270 (357)
Q Consensus       191 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      .+|+++|++++|+||+++||||+|||++++.+.+..                                            
T Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~--------------------------------------------  195 (258)
T d2fw2a1         160 NEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMI--------------------------------------------  195 (258)
T ss_dssp             HHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHH--------------------------------------------
T ss_pred             chhhccCcccccccccccccccccccccccccccch--------------------------------------------
Confidence            999999999999999999999999999998754443                                            


Q ss_pred             CHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018384          271 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  350 (357)
Q Consensus       271 ~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~a  350 (357)
                                             ++++|++.||.+++.+|++++.....+++++++.|.+.+...+.   ++|++||++|
T Consensus       196 -----------------------~a~~i~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~Egi~a  249 (258)
T d2fw2a1         196 -----------------------QIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWS---SAQGIESMLK  249 (258)
T ss_dssp             -----------------------HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred             -----------------------hhhhhhhhhHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                   38899999999999999999999888999999999999999998   9999999999


Q ss_pred             eeccCC
Q 018384          351 QILNKH  356 (357)
Q Consensus       351 fl~~r~  356 (357)
                      |+|||+
T Consensus       250 f~EKR~  255 (258)
T d2fw2a1         250 YVENKI  255 (258)
T ss_dssp             HHHSSC
T ss_pred             HhCCCC
Confidence            999986

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2e-56  Score=409.46  Aligned_cols=249  Identities=24%  Similarity=0.316  Sum_probs=227.3

Q ss_pred             CCCceEEEEe---CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCC
Q 018384           32 LCNQVLVEGK---ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK  108 (357)
Q Consensus        32 ~~~~i~~~~~---~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~  108 (357)
                      .++.|.++++   ++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...    .
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~----~   77 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR----T   77 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC----C
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhcc----c
Confidence            4678999987   48999999999999999999999999999999999999999999999999999999987532    1


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChH
Q 018384          109 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  188 (357)
Q Consensus       109 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~  188 (357)
                        ....+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        78 --~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~  155 (260)
T d1mj3a_          78 --FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGK  155 (260)
T ss_dssp             --HHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCH
T ss_pred             --hhhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCH
Confidence              112334455667788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHc
Q 018384          189 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  267 (357)
Q Consensus       189 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      . +++|+++|++++++||+++|||++|++++++.+...                                          
T Consensus       156 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~------------------------------------------  193 (260)
T d1mj3a_         156 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAI------------------------------------------  193 (260)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCcccCchhhccCCCceeeecccccccccc------------------------------------------
Confidence            8 999999999999999999999999999999865433                                          


Q ss_pred             CCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          268 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       268 ~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                               +.+.+++..+|.+++.+|++++.....+++++++.|.+.+...+.   ++|++||
T Consensus       194 -------------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~---s~d~~eg  245 (260)
T d1mj3a_         194 -------------------------QCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFA---TDDRREG  245 (260)
T ss_dssp             -------------------------HHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGG---SHHHHHH
T ss_pred             -------------------------cccccccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                     338899999999999999999999999999999999999999998   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      ++||++||+
T Consensus       246 i~aFleKR~  254 (260)
T d1mj3a_         246 MSAFVEKRK  254 (260)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHhCCCC
Confidence            999999986

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=2.9e-55  Score=403.76  Aligned_cols=255  Identities=20%  Similarity=0.239  Sum_probs=231.4

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhc-cCChH
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMN-QGKLE  110 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~-~~~~~  110 (357)
                      |++.|.++++|+|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|+.++..... ....+
T Consensus         1 my~~i~~~i~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           1 MYEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            78899999999999999999999999999999999999999999999999999999999999999998743110 01112


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|.. 
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~  160 (269)
T d1nzya_          81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRR  160 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhh
Confidence            2333445567889999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      ++++++||+.|+|+||+++||||+|+|++++.+.+..                                           
T Consensus       161 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~-------------------------------------------  197 (269)
T d1nzya_         161 AMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWK-------------------------------------------  197 (269)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHH-------------------------------------------
T ss_pred             hhhccccccccchhHHHHcCCccccccccccccchhh-------------------------------------------
Confidence            9999999999999999999999999998887654433                                           


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                              ++++|++.||.+++.+|+.+++....+++++++.|.+.+...+.   ++|++|||+
T Consensus       198 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~e~v~  250 (269)
T d1nzya_         198 ------------------------VARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVT---HPHFMPCLT  250 (269)
T ss_dssp             ------------------------HHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH---STTHHHHHH
T ss_pred             ------------------------hhhhhhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                    38899999999999999999999999999999999999999998   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      +|++||+
T Consensus       251 aflekrk  257 (269)
T d1nzya_         251 RFLDGHR  257 (269)
T ss_dssp             HHHTTCC
T ss_pred             HHHCCCC
Confidence            9999986

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.7e-55  Score=400.97  Aligned_cols=251  Identities=16%  Similarity=0.164  Sum_probs=228.1

Q ss_pred             CCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        32 ~~~~i~~~~-~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      .++.+.++. ++||++|+| ||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++....  ...+
T Consensus         7 ~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~--~~~~   83 (263)
T d1wz8a1           7 RYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMR--ASHE   83 (263)
T ss_dssp             HCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHH--HCHH
T ss_pred             CCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhc--cccc
Confidence            467788887 678999999 798999999999999999999999999999999999999999999999986542  2345


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      ....+......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~  163 (263)
T d1wz8a1          84 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAK  163 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHH
T ss_pred             ccccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            5566777788899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++|+++|++++|+||+++|||++|+|++++.+.+.                                            
T Consensus       164 a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  199 (263)
T d1wz8a1         164 AKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKAL--------------------------------------------  199 (263)
T ss_dssp             HHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHH--------------------------------------------
T ss_pred             hhhhcccccccchhHHHhcCCcccccchhhhhHHHH--------------------------------------------
Confidence            999999999999999999999999999988865433                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  349 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~  349 (357)
                                             +++++|+++||.+++.+|+++++.....+ +.++.|...+...+.   ++|++||++
T Consensus       200 -----------------------~~a~~la~~~~~al~~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~---s~d~~Egi~  252 (263)
T d1wz8a1         200 -----------------------EVAERLAQGPKEALHHTKHALNHWYRSFL-PHFELSLALEFLGFS---GKELEEGLK  252 (263)
T ss_dssp             -----------------------HHHHHHHTSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHGGG---SHHHHHHHH
T ss_pred             -----------------------HHHHHhhccHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHcc---CHHHHHHHH
Confidence                                   34899999999999999999998877555 458889988888887   999999999


Q ss_pred             heeccCC
Q 018384          350 FQILNKH  356 (357)
Q Consensus       350 afl~~r~  356 (357)
                      ||++||+
T Consensus       253 Af~eKR~  259 (263)
T d1wz8a1         253 ALKEKRP  259 (263)
T ss_dssp             HHHTTSC
T ss_pred             HHhCCCC
Confidence            9999996

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.2e-54  Score=393.21  Aligned_cols=248  Identities=24%  Similarity=0.260  Sum_probs=226.1

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDF  115 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~  115 (357)
                      |.++ +|+|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|+.||+|+|++.+.... .........+
T Consensus         2 v~ie-~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~-~~~~~~~~~~   79 (253)
T d1uiya_           2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVT-ELGAEENYRH   79 (253)
T ss_dssp             EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHT-TSCHHHHHHH
T ss_pred             EEEe-eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhcc-ccCcccccch
Confidence            4455 3779999999999999999999999999999999999999999999999999999999876543 2344555666


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHH
Q 018384          116 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  194 (357)
Q Consensus       116 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~  194 (357)
                      ....+.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++|. |++++|++++|.. +++|+
T Consensus        80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~  158 (253)
T d1uiya_          80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLL  158 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHH
T ss_pred             hhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHh
Confidence            677788999999999999999999999999999999999999999999999999998875 6688899999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHH
Q 018384          195 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  274 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  274 (357)
                      +||++++++||+++|||++|+|++++.+.+.                                                 
T Consensus       159 l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~-------------------------------------------------  189 (253)
T d1uiya_         159 LTGRLVEAREAKALGLVNRIAPPGKALEEAK-------------------------------------------------  189 (253)
T ss_dssp             HHCCEEEHHHHHHHTSCSEEECTTCHHHHHH-------------------------------------------------
T ss_pred             hcCcCCCHHHHHHhCCCcccccccccchhHH-------------------------------------------------
Confidence            9999999999999999999999999865433                                                 


Q ss_pred             HHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018384          275 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  354 (357)
Q Consensus       275 i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~  354 (357)
                                        ++++++++.+|.++..+|++++.....+++++++.|...+...+.   ++|++||++||++|
T Consensus       190 ------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~egi~af~eK  248 (253)
T d1uiya_         190 ------------------ALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRE---TGDLAEGIRAFFEK  248 (253)
T ss_dssp             ------------------HHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGG---CHHHHHHHHHHHTT
T ss_pred             ------------------HHHHhhcccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhCC
Confidence                              348899999999999999999999999999999999999999988   99999999999999


Q ss_pred             CC
Q 018384          355 KH  356 (357)
Q Consensus       355 r~  356 (357)
                      |+
T Consensus       249 R~  250 (253)
T d1uiya_         249 RP  250 (253)
T ss_dssp             SC
T ss_pred             CC
Confidence            97

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-53  Score=394.44  Aligned_cols=254  Identities=19%  Similarity=0.247  Sum_probs=226.0

Q ss_pred             CCceEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCC---
Q 018384           33 CNQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGK---  108 (357)
Q Consensus        33 ~~~i~~~-~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~---  108 (357)
                      |+.+.++ .+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|+.++........   
T Consensus         2 y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~   81 (275)
T d1dcia_           2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhccccccccc
Confidence            5678775 478899999999999999999999999999999999999999999999999999999998876433221   


Q ss_pred             h----HHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhh
Q 018384          109 L----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH  184 (357)
Q Consensus       109 ~----~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r  184 (357)
                      .    .....+...++.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~  161 (275)
T d1dcia_          82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK  161 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred             ccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccccc
Confidence            1    122344555678888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHH--HHHHHhcCCCCCHHHHHHcCccceecCCCCh-hHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHH
Q 018384          185 LPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSEKL-PLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (357)
Q Consensus       185 ~~g~~--a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (357)
                      ++|..  +.+++++|+.++++||+++|||++|+|+++. .....                                    
T Consensus       162 ~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~------------------------------------  205 (275)
T d1dcia_         162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAF------------------------------------  205 (275)
T ss_dssp             TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHH------------------------------------
T ss_pred             ccccccccccccccccccchhhhccCCCceeeeehhhhhhhccc------------------------------------
Confidence            99954  5689999999999999999999999987654 22211                                    


Q ss_pred             HHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCC
Q 018384          262 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  341 (357)
Q Consensus       262 ~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s  341 (357)
                                                     +++++|++.+|.+++.+|+.++.+...+++++++.|.+.+...+.   +
T Consensus       206 -------------------------------~~a~~i~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~  251 (275)
T d1dcia_         206 -------------------------------ALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ---T  251 (275)
T ss_dssp             -------------------------------HHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS---S
T ss_pred             -------------------------------ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---C
Confidence                                           348899999999999999999999999999999999999999987   9


Q ss_pred             CChhhhhhheeccCC
Q 018384          342 GDFYEVSNFQILNKH  356 (357)
Q Consensus       342 ~d~~egi~afl~~r~  356 (357)
                      +|++|||+||+|||+
T Consensus       252 ~d~~Egi~AfleKR~  266 (275)
T d1dcia_         252 QDIIKSVQAAMEKKD  266 (275)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999999996

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-54  Score=397.30  Aligned_cols=246  Identities=20%  Similarity=0.240  Sum_probs=226.3

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      ++||++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++.+...    .......+...+
T Consensus        13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~----~~~~~~~~~~~~   88 (266)
T d1hzda_          13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM----SSSEVGPFVSKI   88 (266)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS----CHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccc----cchhhhhhhhHH
Confidence            467999999999999999999999999999999999999999999998 689999999987542    344556677788


Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcCC
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA  198 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~  198 (357)
                      +.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|++||+
T Consensus        89 ~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~  168 (266)
T d1hzda_          89 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR  168 (266)
T ss_dssp             HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCC
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             CCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHHHHHHH
Q 018384          199 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS  278 (357)
Q Consensus       199 ~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~  278 (357)
                      .++|++|+++||||+|||++++.+...                                                     
T Consensus       169 ~~~a~eA~~~Glv~~vv~~~~l~~~~~-----------------------------------------------------  195 (266)
T d1hzda_         169 VLDGKEAKAVGLISHVLEQNQEGDAAY-----------------------------------------------------  195 (266)
T ss_dssp             EEEHHHHHHHTSCSEEECCCTTSCHHH-----------------------------------------------------
T ss_pred             ccCHHHhhcccccccccChhhhhhHHH-----------------------------------------------------
Confidence            999999999999999999998764322                                                     


Q ss_pred             HhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018384          279 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH  356 (357)
Q Consensus       279 l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi~afl~~r~  356 (357)
                                +++.+++++|+..||.+++.+|++++++...+++++++.|...+...+.   ++|++||++||++||+
T Consensus       196 ----------~~a~~~a~~i~~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~Eg~~AF~eKR~  260 (266)
T d1hzda_         196 ----------RKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIP---TKDRLEGLLAFKEKRP  260 (266)
T ss_dssp             ----------HHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTT---CHHHHHHHHHHTTTSC
T ss_pred             ----------HHHHHHHHhcccCChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhCCCC
Confidence                      2344568899999999999999999999999999999999999999887   9999999999999996

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.7e-54  Score=391.83  Aligned_cols=248  Identities=18%  Similarity=0.199  Sum_probs=215.4

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecC--CCccccccChHHHHHhhccCChH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS--GRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~--g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      ++.|.++++|+|++||||||++.|+||.+|+.+|.++|++++ ++++++|||+|.  |++||+|+|++++.....+  . 
T Consensus         3 ~~~i~~~~~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~--~-   78 (261)
T d1ef8a_           3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRD--P-   78 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----C--T-
T ss_pred             CCEEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCcc--c-
Confidence            578999999999999999999999999999999999999997 457999999986  4799999999987653211  1 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                        ..+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        79 --~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~  156 (261)
T d1ef8a_          79 --LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI  156 (261)
T ss_dssp             --TCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred             --cccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccc
Confidence              12334456788899999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  269 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      +++++++|+.++|+||+++||||+++|++++.+.+.                                            
T Consensus       157 a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~--------------------------------------------  192 (261)
T d1ef8a_         157 VKELIFTASPITAQRALAVGILNHVVEVEELEDFTL--------------------------------------------  192 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHH--------------------------------------------
T ss_pred             cccccccCceEcHHHHHHcCCcceeeechhhhhhhH--------------------------------------------
Confidence            999999999999999999999999999887764333                                            


Q ss_pred             CCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHhhhcCCCCChhhh
Q 018384          270 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTF--DECLVREYRMSLQGVSRLISGDFYEV  347 (357)
Q Consensus       270 ~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l--~~~l~~e~~~~~~~~~~~~s~d~~eg  347 (357)
                                             +++++|+..||.+++.+|++++...+..+  ...++.+...+...+.   |+|++||
T Consensus       193 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---s~D~~Eg  246 (261)
T d1ef8a_         193 -----------------------QMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYD---SEDYQEG  246 (261)
T ss_dssp             -----------------------HHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             -----------------------HHHHHHHhcCcHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                   34899999999999999999998765543  4455555666667776   9999999


Q ss_pred             hhheeccCC
Q 018384          348 SNFQILNKH  356 (357)
Q Consensus       348 i~afl~~r~  356 (357)
                      ++||++||+
T Consensus       247 i~AfleKR~  255 (261)
T d1ef8a_         247 MNAFLEKRK  255 (261)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHhCCCC
Confidence            999999996

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-52  Score=378.57  Aligned_cols=242  Identities=21%  Similarity=0.267  Sum_probs=216.4

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHH
Q 018384           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEEC  112 (357)
Q Consensus        33 ~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~  112 (357)
                      ++.|.++++|+|++||||||++.|++|.+|+.+|.++++.++.|+.+ +||++|.|++||+|+|++++............
T Consensus         2 ~~~i~~~~~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   80 (245)
T d2f6qa1           2 FETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKA   80 (245)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHH
T ss_pred             cceEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhccccccccccc
Confidence            57899999999999999999999999999999999999999999887 89999999999999999998653322222333


Q ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HH
Q 018384          113 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  191 (357)
Q Consensus       113 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~  191 (357)
                      ..+.....+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        81 ~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~  160 (245)
T d2f6qa1          81 KNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT  160 (245)
T ss_dssp             HHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             chhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhh
Confidence            44555667889999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  271 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      +++++|+.++|+||+++||||+|+|++++.+.+..                                             
T Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~---------------------------------------------  195 (245)
T d2f6qa1         161 EMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWT---------------------------------------------  195 (245)
T ss_dssp             HHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHH---------------------------------------------
T ss_pred             hhcccccccccccccccccccccCCcchHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999998764443                                             


Q ss_pred             HHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018384          272 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  345 (357)
Q Consensus       272 ~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~  345 (357)
                                            ++++|++.||.+++.+|++++......++++++.|...+...+.   |+|++
T Consensus       196 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~  244 (245)
T d2f6qa1         196 ----------------------RLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWL---SDECT  244 (245)
T ss_dssp             ----------------------HHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHT---SHHHH
T ss_pred             ----------------------HHHHHHcCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhc---CcccC
Confidence                                  38899999999999999999998888899999999999999997   88876

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=2.3e-51  Score=384.54  Aligned_cols=291  Identities=14%  Similarity=0.129  Sum_probs=231.6

Q ss_pred             CCceEEEE-eCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           33 CNQVLVEG-KANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        33 ~~~i~~~~-~~~v~~I~ln-~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      .+.+.++. ++||++|+|| +|++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...... ...
T Consensus         5 ~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~   83 (310)
T d1wdka4           5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKL-PDA   83 (310)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTS-CHH
T ss_pred             CceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccc-cch
Confidence            45677776 6789999998 79899999999999999999999999999999999999999999999998764322 223


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-  189 (357)
                      .........+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~  163 (310)
T d1wdka4          84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN  163 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             hhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhh
Confidence            3334444567889999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          190 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       190 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                      +.+++++|++++++||+++||||+|+|++++.+.+..+ .++++.++.... ............                
T Consensus       164 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~-~~~~~~~~~~~~----------------  226 (310)
T d1wdka4         164 AVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKA-KRQPKLEKLKLN----------------  226 (310)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHH-HHGGGGSCCSCC----------------
T ss_pred             hhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhh-hhhhhccccccc----------------
Confidence            99999999999999999999999999999998877766 344444333222 111111111110                


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  348 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi  348 (357)
                        ..+....+-         .+. ....+.......+...+.+.+..+...+++++|+.|.+.|..++.   |++.++++
T Consensus       227 --~~~~~~~~~---------~~~-~~~~~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~---t~~a~~~i  291 (310)
T d1wdka4         227 --AIEQMMAFE---------TAK-GFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAK---TSASNCLI  291 (310)
T ss_dssp             --HHHHHHHHH---------HHH-HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT---SHHHHHHH
T ss_pred             --chhhhHHHH---------Hhh-hhhhhhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhC---CHHHHHHH
Confidence              011111000         011 112333333444555678899999999999999999999999998   99999999


Q ss_pred             hheeccCC
Q 018384          349 NFQILNKH  356 (357)
Q Consensus       349 ~afl~~r~  356 (357)
                      ++|+++|.
T Consensus       292 ~aF~~kr~  299 (310)
T d1wdka4         292 GLFLNDQE  299 (310)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhhhh
Confidence            99998874

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9.1e-51  Score=378.77  Aligned_cols=253  Identities=15%  Similarity=0.187  Sum_probs=206.2

Q ss_pred             CCceEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecC-------CCccccccChHHHHHh
Q 018384           33 CNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGS-------GRAFCAGGDIVSLYHF  103 (357)
Q Consensus        33 ~~~i~~~~--~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~-------g~~F~~G~Dl~~~~~~  103 (357)
                      +..|++++  +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.       |+.||+|.|+......
T Consensus        17 ~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~   96 (297)
T d1q52a_          17 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS   96 (297)
T ss_dssp             CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC--------
T ss_pred             CcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhccc
Confidence            34577765  58999999999999999999999999999999999999999999998       4567777888765322


Q ss_pred             hcc-------CChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCC
Q 018384          104 MNQ-------GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPD  175 (357)
Q Consensus       104 ~~~-------~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~  175 (357)
                      ...       ...+........+..++..|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p~  176 (297)
T d1q52a_          97 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDG  176 (297)
T ss_dssp             ---------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCC
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccccc
Confidence            110       011112223334667888999999999999999999999999999999999875 579999999999999


Q ss_pred             CcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChh
Q 018384          176 AGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKN  254 (357)
Q Consensus       176 ~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (357)
                      +|++++|+|++|.. ++++++||+.++|+||+++|||++|+|++++.+.+..                            
T Consensus       177 ~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~----------------------------  228 (297)
T d1q52a_         177 GYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQ----------------------------  228 (297)
T ss_dssp             STTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHH----------------------------
T ss_pred             cccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHH----------------------------
Confidence            99999999999999 9999999999999999999999999999988754443                            


Q ss_pred             hHHHHHHHHHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 018384          255 SVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQ  334 (357)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~  334 (357)
                                                             +++++++.||.+++.+|++++... ..+.+....|.+.+..
T Consensus       229 ---------------------------------------~a~~l~~~~~~a~~~~K~~~~~~~-~~~~~~~~~~~~~~~~  268 (297)
T d1q52a_         229 ---------------------------------------WAAEINAKSPQAQRMLKFAFNLLD-DGLVGQQLFAGEATRL  268 (297)
T ss_dssp             ---------------------------------------HHHHHHTSCHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------HhhhhccCCHHHHHHHHHHHHHhh-cChHHHHHHHHHHHHH
Confidence                                                   389999999999999999998754 4555555567777767


Q ss_pred             hhhcCCCCChhhhhhheeccCC
Q 018384          335 GVSRLISGDFYEVSNFQILNKH  356 (357)
Q Consensus       335 ~~~~~~s~d~~egi~afl~~r~  356 (357)
                      .+.   ++|++||++||++||+
T Consensus       269 ~~~---s~d~~Egv~AF~eKR~  287 (297)
T d1q52a_         269 AYM---TDEAVEGRDAFLQKRP  287 (297)
T ss_dssp             HHT---SHHHHHHHHHHHTTSC
T ss_pred             Hhc---CHHHHHHHHHHhCCCC
Confidence            776   9999999999999986

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=1.3e-49  Score=357.67  Aligned_cols=225  Identities=16%  Similarity=0.231  Sum_probs=201.2

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHHHHH
Q 018384           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEECKD  114 (357)
Q Consensus        36 i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~  114 (357)
                      +..+.+|+|++||||||++.|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|.|++++....   ..+....
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~---~~~~~~~   78 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLS---RSEDIEE   78 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC----CHHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccc---ccccccc
Confidence            34567889999999999999999999999999999999999999999999987 8999999999986532   3445566


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHH
Q 018384          115 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  193 (357)
Q Consensus       115 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l  193 (357)
                      +...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+ .+|++++|.. ++++
T Consensus        79 ~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l  157 (230)
T d2a7ka1          79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEI  157 (230)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHH
T ss_pred             chhhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-ccccccccccccccc
Confidence            7778888999999999999999999999999999999999999999999999999999988765 5799999998 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcCCCCHH
Q 018384          194 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  273 (357)
Q Consensus       194 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  273 (357)
                      +++|++++|+||+++||||+|+|++++.+.+.                                                
T Consensus       158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------  189 (230)
T d2a7ka1         158 IYQCQSLDAPRCVDYRLVNQVVESSALLDAAI------------------------------------------------  189 (230)
T ss_dssp             HHHCCCBCHHHHHHHTCCSEEECHHHHHHHHH------------------------------------------------
T ss_pred             ccccccchHHHHHHhhhcccCCChHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999877764333                                                


Q ss_pred             HHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 018384          274 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRM  331 (357)
Q Consensus       274 ~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~  331 (357)
                                         +++++|++.||.+++.+|+++++.....+++.++.|..+
T Consensus       190 -------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~a~  228 (230)
T d2a7ka1         190 -------------------TQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAV  228 (230)
T ss_dssp             -------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHcCCHHHHHHHHHHHHHHHhccHHHHHHHHHHh
Confidence                               348899999999999999999998887888888776543

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=5e-50  Score=364.48  Aligned_cols=240  Identities=16%  Similarity=0.174  Sum_probs=217.0

Q ss_pred             ceEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCC-CccccccChHHHHHhhccCChHH
Q 018384           35 QVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSG-RAFCAGGDIVSLYHFMNQGKLEE  111 (357)
Q Consensus        35 ~i~~~~--~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~  111 (357)
                      .+.++.  .+||++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..    .....
T Consensus         3 ~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~----~~~~~   77 (249)
T d1sg4a1           3 RVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG----RSPAH   77 (249)
T ss_dssp             SEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS----CCHHH
T ss_pred             cEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccc----ccccc
Confidence            455555  4779999999997 6999999999999999999999999999999998 57999999998743    34556


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEE--ecccccccccCCCcHHHHHhhcChHH
Q 018384          112 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF--ATPETLIGFHPDAGASFYLSHLPGHL  189 (357)
Q Consensus       112 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f--~~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (357)
                      ...+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|  ++||+++|++|++|++++|++++|..
T Consensus        78 ~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~  157 (249)
T d1sg4a1          78 YAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHR  157 (249)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHH
T ss_pred             ccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccc
Confidence            6777888889999999999999999999999999999999999999999876  78999999999999999999999998


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       190 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                       +++++++|+++++++|+++|||++++|++++.+.+..                                          
T Consensus       158 ~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~------------------------------------------  195 (249)
T d1sg4a1         158 AAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALS------------------------------------------  195 (249)
T ss_dssp             HHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHH------------------------------------------
T ss_pred             cccccccccccccHHHHHhhccccccCChHHHHHHHHH------------------------------------------
Confidence             9999999999999999999999999998888754443                                          


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  348 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~s~d~~egi  348 (357)
                                               +++++++.||.+++.+|+++++.....+.+.++.|.+.+...+.   +++++|+|
T Consensus       196 -------------------------~a~~l~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~---~e~~~~~l  247 (249)
T d1sg4a1         196 -------------------------AIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFIS---KDSIQKSL  247 (249)
T ss_dssp             -------------------------HHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT---SHHHHHHH
T ss_pred             -------------------------HHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---CHHHHHhc
Confidence                                     38899999999999999999998888899999999999988886   88888887


Q ss_pred             h
Q 018384          349 N  349 (357)
Q Consensus       349 ~  349 (357)
                      +
T Consensus       248 e  248 (249)
T d1sg4a1         248 Q  248 (249)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-49  Score=362.51  Aligned_cols=245  Identities=15%  Similarity=0.094  Sum_probs=208.8

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccC----
Q 018384           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQG----  107 (357)
Q Consensus        32 ~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~----  107 (357)
                      +.+.|.++++|+|++||||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++.......    
T Consensus         3 ~~e~i~~~~~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   82 (266)
T d1pjha_           3 QNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY   82 (266)
T ss_dssp             CBTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred             CCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccc
Confidence            4678999999999999999999999999999999999999999999999999999999999999999986532211    


Q ss_pred             ---ChHHHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeC-ceEEecccccccccCCCcHHHHHh
Q 018384          108 ---KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLS  183 (357)
Q Consensus       108 ---~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~  183 (357)
                         .......+......++..+.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~  162 (266)
T d1pjha_          83 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLP  162 (266)
T ss_dssp             SSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccc
Confidence               1223445666777889999999999999999999999999999999999965 689999999999999999999999


Q ss_pred             hcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHH
Q 018384          184 HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDI  262 (357)
Q Consensus       184 r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (357)
                      |++|.. +.+|++||+.++|+||+++|||++|+++++....  .+.                                  
T Consensus       163 r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~--~~~----------------------------------  206 (266)
T d1pjha_         163 LKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAE--AFN----------------------------------  206 (266)
T ss_dssp             HHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHH--HHH----------------------------------
T ss_pred             cccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHH--HHH----------------------------------
Confidence            999999 9999999999999999999999999988776531  110                                  


Q ss_pred             HHHHcCCCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q 018384          263 VDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  337 (357)
Q Consensus       263 ~~~~~~~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~~~~~~~~~  337 (357)
                                               .+.+.+++.++...++.++..+|++++......++.++..|.......+.
T Consensus       207 -------------------------~~~~~~l~~~~~~~~~~s~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~f~  256 (266)
T d1pjha_         207 -------------------------AKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWV  256 (266)
T ss_dssp             -------------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence                                     01223457788889999999999999988777788877777766655543

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=7.4e-48  Score=350.00  Aligned_cols=227  Identities=16%  Similarity=0.219  Sum_probs=203.8

Q ss_pred             cCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChH
Q 018384           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLE  110 (357)
Q Consensus        31 ~~~~~i~~~~~~~v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~  110 (357)
                      ..++.|.++++|+|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++..    ....
T Consensus        10 ~~y~~i~~~~~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~----~~~~   85 (249)
T d1szoa_          10 QKYENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL----GTPH   85 (249)
T ss_dssp             TSCTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCC----SSHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhc----cccc
Confidence            468889999999999999999999999999999999999999999999999999999999999999998743    3455


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEe-cccccccccCCCcHHHHHhhcChHH
Q 018384          111 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPETLIGFHPDAGASFYLSHLPGHL  189 (357)
Q Consensus       111 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~-~pe~~~Gl~p~~g~~~~l~r~~g~~  189 (357)
                      ....+...++.++..+.++||||||++||+|.| |++|+++||+||++++++|. +||+++|++|++|++++|+|++|..
T Consensus        86 ~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~  164 (249)
T d1szoa_          86 DWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSN  164 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHH
T ss_pred             chhhhhhhhhhhhhhcccCcccceeeecccccc-ccccccccccccccCCcEEEEeeccccccccccccccccccccCcc
Confidence            666777788899999999999999999998855 77899999999999999995 7999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHcC
Q 018384          190 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  268 (357)
Q Consensus       190 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (357)
                       +++|+++|++++++||+++||||+|+|++++.+.+.                                           
T Consensus       165 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------  201 (249)
T d1szoa_         165 RGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAW-------------------------------------------  201 (249)
T ss_dssp             HHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHH-------------------------------------------
T ss_pred             ceeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999887764333                                           


Q ss_pred             CCCHHHHHHHHhcccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHH
Q 018384          269 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREY  329 (357)
Q Consensus       269 ~~~~e~i~~~l~~~~~~~~~~~a~~~a~~l~~~~p~a~~~~k~~l~~~~~~~l~~~l~~e~  329 (357)
                                              +++++|++.||.+++.+|+++++.....++..++.+.
T Consensus       202 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~e~~l~~~l  238 (249)
T d1szoa_         202 ------------------------ELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLGL  238 (249)
T ss_dssp             ------------------------HHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             ------------------------HHHHHHHcCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence                                    3489999999999999999999877666666665543

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.4e-06  Score=72.82  Aligned_cols=132  Identities=16%  Similarity=0.108  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHHHHcCCCce--EEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           58 LNTNMGAKLNKLFKAWENDPNIG--FVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~--~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      +|.++...+...+..++.++..+  .|.|.+.      |+|+..-                   ..++..|..++.||+.
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~------GG~v~~g-------------------~~i~d~i~~~~~~v~t   79 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIYLYINSP------GGVITAG-------------------MSIYDTMQFIKPDVST   79 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC------CBCHHHH-------------------HHHHHHHHHSSSCEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceEEEEeCC------CccHHHH-------------------HHHHHHHHhCCCCEEE
Confidence            67888888888887776432212  3444544      4554321                   2245567788999999


Q ss_pred             EEccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcHHHHHh------------------hcCh--HH-HHH
Q 018384          136 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFYLS------------------HLPG--HL-GEF  192 (357)
Q Consensus       136 ~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------r~~g--~~-a~~  192 (357)
                      .+.|.|.+.|..+.+++|  .|++.++++|.+-+...|..   |...-+.                  +..|  .. ...
T Consensus        80 v~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~  156 (183)
T d1yg6a1          80 ICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIER  156 (183)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999998  79999999999988876653   2211111                  0111  11 233


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCC
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      ++-.-..++|+||+++||||+|++.
T Consensus       157 ~~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         157 DTERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             HTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HhccCccccHHHHHHcCCCcEEecc
Confidence            3333445799999999999999964

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.29  E-value=3e-06  Score=70.56  Aligned_cols=134  Identities=16%  Similarity=0.123  Sum_probs=86.8

Q ss_pred             CCHHHHHHHHHHHHHHHcC---CCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           58 LNTNMGAKLNKLFKAWEND---PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d---~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      +|.++..++...|..++.+   +.+. +.|.+      .|+|+...                   ..++..+..++.||.
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS------~GG~v~~g-------------------l~i~d~i~~~~~~v~   75 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDIS-LYINS------PGGSISAG-------------------MAIYDTMVLAPCDIA   75 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEE------CCBCHHHH-------------------HHHHHHHHHCSSCEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEE-EEeeC------CCCCHHHH-------------------HHHHHHHHhhcccee
Confidence            7888888888877655432   2333 44454      44444321                   124455667899999


Q ss_pred             EEEccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcHHH----HH-----------hhcCh--HH-HHHHH
Q 018384          135 AILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASF----YL-----------SHLPG--HL-GEFLA  194 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~----~l-----------~r~~g--~~-a~~l~  194 (357)
                      ..+.|.|.+.|..+.+++|  .|++.++++|.+.+...|+.-...-..    .+           .+..|  .. -..++
T Consensus        76 t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~  155 (179)
T d2cbya1          76 TYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS  155 (179)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             eehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Confidence            9999999999999999999  899999999999887655521111000    00           01111  11 23445


Q ss_pred             hcCCCCCHHHHHHcCccceecCC
Q 018384          195 LTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       195 ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      -....++|+||+++||||+|+..
T Consensus       156 ~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         156 DRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HTTCEEEHHHHHHHTSCSEECSC
T ss_pred             cCCceecHHHHHHcCCCcEEecC
Confidence            56777999999999999999864

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.19  E-value=7.1e-06  Score=68.96  Aligned_cols=135  Identities=13%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             CCCHHHHHHHHHHHHHHHc-CC--CceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcE
Q 018384           57 ALNTNMGAKLNKLFKAWEN-DP--NIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH  133 (357)
Q Consensus        57 al~~~~~~~L~~~l~~~~~-d~--~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPv  133 (357)
                      .+|.++...+...|..++. |+  .+ -+.|.+.|+...+|                         ..++..+..++.||
T Consensus        32 ~I~~~~~~~~~~~l~~l~~~~~~~~I-~l~InS~GG~v~~g-------------------------lai~d~i~~~~~~v   85 (192)
T d1y7oa1          32 PVEDNMANSVIAQLLFLDAQDSTKDI-YLYVNTPGGSVSAG-------------------------LAIVDTMNFIKADV   85 (192)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCE-EEEEEECCBCHHHH-------------------------HHHHHHHHHSSSCE
T ss_pred             EEchHHHHHHHHHHHHhhhhcccCce-eeeecCCCCCHHHH-------------------------HHHHHHHHhcCcce
Confidence            3788888888887776653 22  33 34456554433333                         12455677789999


Q ss_pred             EEEEccceechhhhhhcc--CCeEEEeCceEEecccccccccCCCcHHH------HHh-----------hcCh--HH-HH
Q 018384          134 VAILNGVTMGGGAGVSIP--GTFRVACGKTVFATPETLIGFHPDAGASF------YLS-----------HLPG--HL-GE  191 (357)
Q Consensus       134 Ia~v~G~a~GgG~~lal~--~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~------~l~-----------r~~g--~~-a~  191 (357)
                      ...+.|.|.+.|..++++  +|.|++.+++.|.+-....|.........      .+.           ...|  .. ..
T Consensus        86 ~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~  165 (192)
T d1y7oa1          86 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVH  165 (192)
T ss_dssp             EEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             EEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999999999888776  67999999999999988877643211110      011           1111  11 24


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCC
Q 018384          192 FLALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       192 ~l~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      +.+-....++|+||+++||||+|+..
T Consensus       166 ~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         166 ADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HhhcCCceecHHHHHHcCCCcEEecC
Confidence            44556777999999999999999864

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.04  E-value=4.8e-05  Score=63.54  Aligned_cols=131  Identities=14%  Similarity=0.083  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHHHHHHHHcC--CCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           58 LNTNMGAKLNKLFKAWEND--PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d--~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      +|.++..++...|..++..  +.+. |.|.      |.|+|+...                   ..++..+..++.||..
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~-l~IN------S~GG~v~~g-------------------~ai~d~i~~~~~~v~t   80 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIK-IYIN------SPGGSINEG-------------------LAILDIFNYIKSDIQT   80 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEE-EEEE------ECCBCHHHH-------------------HHHHHHHHHSSSCEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeE-EEEe------CchhhhhHH-------------------HHHHHHHHhhCCceEE
Confidence            7888888888888777542  2343 3344      445555332                   1244556678999999


Q ss_pred             EEccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcHHHHH------------------hhcChH--H-HHH
Q 018384          136 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFYL------------------SHLPGH--L-GEF  192 (357)
Q Consensus       136 ~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~~g~--~-a~~  192 (357)
                      .+.|.|.+.|..+++++|  .|++.++++|.+.....|..   |...-+                  .+..|.  . -..
T Consensus        81 v~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~  157 (190)
T d2f6ia1          81 ISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEK  157 (190)
T ss_dssp             EEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            999999999999999988  69999999999999877753   211111                  111111  1 223


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCC
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      .+-....++|+||+++||||+|++.
T Consensus       158 ~~~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         158 DSDRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             hccCCeeecHHHHHHcCCCcEEccc
Confidence            3344556999999999999999964

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.00  E-value=2.6e-05  Score=65.38  Aligned_cols=132  Identities=13%  Similarity=0.066  Sum_probs=89.0

Q ss_pred             CCHHHHHHHHHHHHHHHcC---CCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           58 LNTNMGAKLNKLFKAWEND---PNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d---~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      +|.++...+...+..++..   ..+. +.|.+.|+.+.+|.                         .++..+..++.||.
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~GG~v~~g~-------------------------~i~d~i~~~~~~V~   88 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGGVVTAGL-------------------------AIYDTMQYILNPIC   88 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECCBCHHHHH-------------------------HHHHHHHHSCSCEE
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEE-EEeecCcccHHHHH-------------------------HHHHHHHhhcCceE
Confidence            6788888888777666532   2343 44465554433332                         24556777899999


Q ss_pred             EEEccceechhhhhhccCC--eEEEeCceEEecccccccccCCCcHHHHH---------h--------hcCh--HH-HHH
Q 018384          135 AILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFYL---------S--------HLPG--HL-GEF  192 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l---------~--------r~~g--~~-a~~  192 (357)
                      ..+.|.|.+.|..+.+++|  .|++.++++|.+-....|..-  -....-         .        ...|  .. ...
T Consensus        89 tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G--~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~  166 (193)
T d1tg6a1          89 TWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARG--QATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIES  166 (193)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            9999999999999999999  599999999999888766531  111110         0        0011  11 233


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCC
Q 018384          193 LALTGAKLNGAEMMACGLATHYSVS  217 (357)
Q Consensus       193 l~ltG~~i~a~eA~~~GLv~~vv~~  217 (357)
                      ++-....++|+||+++||||+|+..
T Consensus       167 ~~~rD~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         167 AMERDRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             HHSSCEEECHHHHHHHTSCSEECSS
T ss_pred             HhccCccCCHHHHHHcCCCCEEccC
Confidence            3334445999999999999999853

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=5.5e-05  Score=67.86  Aligned_cols=137  Identities=12%  Similarity=0.010  Sum_probs=97.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      ..++++-++.-.+.++.++.- .+-+|-|--.+++++ |.+-.             .......+.+.+..+..+++|+|+
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtpG~~~-g~~~E-------------~~g~~~~~a~~~~~~~~~~vP~i~  194 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAYP-GVGAE-------------ERGQSEAIARNLREMSRLGVPVVC  194 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-SHHHH-------------HTTHHHHHHHHHHHHHTCSSCEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHc-CcceEEEEecCcccC-Ccccc-------------cccHHHHHHHHHHHHHhCCCceEE
Confidence            468899999988888888765 355665554333332 22211             122234556677889999999999


Q ss_pred             EEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCcccee
Q 018384          136 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHY  214 (357)
Q Consensus       136 ~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~v  214 (357)
                      .|-|-+.|||.-....+|.+++.++++++.      +.|.++++..+...--.. +.+.    ..+++++.+++|+||+|
T Consensus       195 vv~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeI  264 (316)
T d2f9ya1         195 TVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSI  264 (316)
T ss_dssp             EEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCC
T ss_pred             EEEhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhc
Confidence            999999999998888999999999999983      256665555544333222 3332    35799999999999999


Q ss_pred             cCC
Q 018384          215 SVS  217 (357)
Q Consensus       215 v~~  217 (357)
                      +|.
T Consensus       265 I~E  267 (316)
T d2f9ya1         265 IPE  267 (316)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            965

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.70  E-value=0.0006  Score=59.22  Aligned_cols=140  Identities=13%  Similarity=0.143  Sum_probs=89.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |.++-.|-.=+.-+++......+..+.+.+..+. +-+|.+.-     |+|..+.+-.        .....+...+..+ 
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~-----sgG~r~~eg~--------~~l~~~~~~~~~~-  155 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYD-----SGGARIQEGI--------DSLSGYGKMFFAN-  155 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTH--------HHHHHHHHHHHHH-
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhcC-CCeEEEEe-----cCCCcccccc--------eeccccceehHHH-
Confidence            4444444444778999999999999999988764 45555543     3444443211        1111111222222 


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  203 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~  203 (357)
                      ..+. -.+|+|+++.|+|+||+.....+||++|+++++.+++.-.               +++     + ..+|+.++.+
T Consensus       156 ~~ls-~~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP---------------~vV-----e-~~~ge~~~~e  213 (253)
T d1on3a1         156 VKLS-GVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGP---------------QVI-----K-SVTGEDVTAD  213 (253)
T ss_dssp             HHHT-TTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCH---------------HHH-----H-HHHCCCCCHH
T ss_pred             HHHh-ccceEEEEEecCcccceeeccchhhheeccccceEEecCc---------------chh-----h-hhhCCcCChH
Confidence            2333 3599999999999999999999999999998777664311               111     1 1356767665


Q ss_pred             HH-------HHcCccceecCCCCh
Q 018384          204 EM-------MACGLATHYSVSEKL  220 (357)
Q Consensus       204 eA-------~~~GLv~~vv~~~~l  220 (357)
                      |.       ...|.||.++++++.
T Consensus       214 elGga~~h~~~sG~iD~v~~~e~~  237 (253)
T d1on3a1         214 ELGGAEAHMAISGNIHFVAEDDDA  237 (253)
T ss_dssp             HHHSHHHHHHTTCCCSEEESSHHH
T ss_pred             hccCHHHhhhccccceEEECCHHH
Confidence            43       457999999987654

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=0.00026  Score=62.01  Aligned_cols=141  Identities=12%  Similarity=0.150  Sum_probs=88.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |+++-.|-.=..-+++....+.+..+.+.+.++. +-.|.++-     |.|..+.+-.        ..... ........
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~-----sgG~r~~e~~--------~sl~~-~~~~~~~~  162 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDN-CPLICFSA-----SGGARMQEAL--------MSLMQ-MAKTSAAL  162 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEE-----ESSBCGGGTH--------HHHHH-HHHHHHHH
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHcC-CCeEEEec-----CCCccccccc--------chhhc-chhHHHHH
Confidence            4444555444778999999999999999888654 55666654     4444443211        11111 12222233


Q ss_pred             HHHhcCCCcEEEEEccceechhh-hhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCC--
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL--  200 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i--  200 (357)
                      ..+....+|+|+++.|+|.||+. .+++++|++++.+.+.+++.-.               +++-      ..+|+.+  
T Consensus       163 ~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP---------------~vve------~~~ge~~~e  221 (263)
T d2f9yb1         163 AKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGP---------------RVIE------QTVREKLPP  221 (263)
T ss_dssp             HHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH---------------HHHH------HHHTSCCCT
T ss_pred             HHHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCH---------------HHHh------hhcCCcCCh
Confidence            44556779999999999999876 5788888888888877665311               1111      1234433  


Q ss_pred             ---CHHHHHHcCccceecCCCCh
Q 018384          201 ---NGAEMMACGLATHYSVSEKL  220 (357)
Q Consensus       201 ---~a~eA~~~GLv~~vv~~~~l  220 (357)
                         +++-..+.|+||.++++++.
T Consensus       222 ~~g~a~~~~~~G~iD~vv~~ee~  244 (263)
T d2f9yb1         222 GFQRSEFLIEKGAIDMIVRRPEM  244 (263)
T ss_dssp             TTTBHHHHGGGTCCSEECCHHHH
T ss_pred             hhccHHHHHhCCCCCEEECCHHH
Confidence               34444578999999976554

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=0.0015  Score=56.59  Aligned_cols=138  Identities=14%  Similarity=0.155  Sum_probs=87.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHH
Q 018384           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  123 (357)
Q Consensus        44 v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  123 (357)
                      |+++..|-.-..-+++......+..+.+.+.+.. +-+|.|..     |+|..+.+-..        ....... +....
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~d-----sgG~r~~e~~~--------~l~~~~~-~~~~~  152 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGIND-----SGGARIQEGVD--------ALAGYGE-IFLRN  152 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHH--------HHHHHHH-HHHHH
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCcccccccc--------ccccchH-HHHHH
Confidence            4444444444678899999999999988887654 45666554     34444433111        1111111 11111


Q ss_pred             HHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCc-eEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCCCH
Q 018384          124 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG  202 (357)
Q Consensus       124 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a  202 (357)
                      . ...-.+|+|+++.|+|.||+.....+||++|+.++ +.+.       +.             |+...+ ..+|+.++.
T Consensus       153 ~-~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~-------~a-------------Gp~vv~-~~~ge~~~~  210 (251)
T d1vrga1         153 T-LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMF-------IT-------------GPNVIK-AVTGEEISQ  210 (251)
T ss_dssp             H-HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCB-------SS-------------CHHHHH-HHHCCCCCH
T ss_pred             H-HHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEE-------ec-------------Cchhhh-hhcCCcCCh
Confidence            2 23457999999999999999999999999998764 3322       21             111111 267888998


Q ss_pred             HHH-------HHcCccceecCCC
Q 018384          203 AEM-------MACGLATHYSVSE  218 (357)
Q Consensus       203 ~eA-------~~~GLv~~vv~~~  218 (357)
                      ++.       .+.|++|.+++++
T Consensus       211 eelGga~~h~~~sG~~D~v~~de  233 (251)
T d1vrga1         211 EDLGGAMVHNQKSGNAHFLADND  233 (251)
T ss_dssp             HHHHBHHHHHHTSCCCSEEESSH
T ss_pred             HHccchhhhhhccccceEEECCH
Confidence            875       4679999999864

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.44  E-value=0.0026  Score=55.14  Aligned_cols=142  Identities=16%  Similarity=0.146  Sum_probs=90.7

Q ss_pred             EeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHH
Q 018384           40 GKAN-SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT  118 (357)
Q Consensus        40 ~~~~-v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~  118 (357)
                      +++. |.++-.|..=+.-+++....+.+..+.+.+..+. +-.|.|.-.|+     ..+.+-..        .... ...
T Consensus        85 I~G~~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~dsgG-----arm~e~~~--------~~~~-~~~  149 (258)
T d1xnya1          85 VDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSGG-----ARIQEGVA--------SLGA-YGE  149 (258)
T ss_dssp             ETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCCS-----BCGGGTHH--------HHHH-HHH
T ss_pred             ECCEEEEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecCCC-----cccCcccc--------cccc-hhH
Confidence            3443 4555555545778999999999999999988764 56777776443     33332111        0011 111


Q ss_pred             HHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeC-ceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcC
Q 018384          119 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTG  197 (357)
Q Consensus       119 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG  197 (357)
                      +...... ....+|+|+++.|+|.||+.....+||++|+.+ .+.+++.                    |+...+ ..+|
T Consensus       150 ~~~~~~~-~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~a--------------------GP~vv~-~~~g  207 (258)
T d1xnya1         150 IFRRNTH-ASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK-TVTG  207 (258)
T ss_dssp             HHHHHHH-TTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH-HHHC
T ss_pred             HHHHHHH-HcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEec--------------------CHHHHH-HHhc
Confidence            1222222 234699999999999999999998899988776 4444432                    111111 3578


Q ss_pred             CCCCHHHH-------HHcCccceecCCC
Q 018384          198 AKLNGAEM-------MACGLATHYSVSE  218 (357)
Q Consensus       198 ~~i~a~eA-------~~~GLv~~vv~~~  218 (357)
                      +.++.+|+       ..-|++|.+++++
T Consensus       208 e~i~~eelgga~~h~~~sG~~d~v~~de  235 (258)
T d1xnya1         208 EDVGFEELGGARTHNSTSGVAHHMAGDE  235 (258)
T ss_dssp             CCCCHHHHHBHHHHHHTSSCCSEEESSH
T ss_pred             CccChHHhccHHHHHhcCCeeEEEeCCH
Confidence            88888875       4569999999754

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=0.0026  Score=55.19  Aligned_cols=142  Identities=14%  Similarity=0.141  Sum_probs=89.6

Q ss_pred             EeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHH
Q 018384           40 GKAN-SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRT  118 (357)
Q Consensus        40 ~~~~-v~~I~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~  118 (357)
                      +++. |.++-.+-.-+.-+++....+.+..+.+.+.++. +-+|.|.-.     +|..+.+-..        ..... ..
T Consensus        86 I~G~~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~ds-----gGar~~eg~~--------~~~~~-~~  150 (258)
T d2a7sa1          86 IDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGINDG-----AGARIQEGVV--------SLGLY-SR  150 (258)
T ss_dssp             SSSSEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC-----CSBCGGGCTH--------HHHHH-HH
T ss_pred             eccceEEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEecc-----CCcccccccc--------cccch-hh
Confidence            3444 5555555555778999999999999999988765 556666543     3333332100        00111 11


Q ss_pred             HHHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeC-ceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcC
Q 018384          119 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTG  197 (357)
Q Consensus       119 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG  197 (357)
                      +.... ......+|+|+++.|+|.||+......||++|+.+ .+.+.+.                    |+...+ ..+|
T Consensus       151 ~~~~~-~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a--------------------GP~vV~-~~~g  208 (258)
T d2a7sa1         151 IFRNN-ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIK-TVTG  208 (258)
T ss_dssp             HHHHH-HHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS--------------------CHHHHH-HHHC
T ss_pred             HHHHH-HHHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEcc--------------------ChhHHH-HhcC
Confidence            11111 22345699999999999999999999999998865 4443322                    112111 2578


Q ss_pred             CCCCHHHH-------HHcCccceecCCC
Q 018384          198 AKLNGAEM-------MACGLATHYSVSE  218 (357)
Q Consensus       198 ~~i~a~eA-------~~~GLv~~vv~~~  218 (357)
                      +.++.+|.       .+.|.+|.+++++
T Consensus       209 e~~~~eeLGga~~h~~~sG~~D~v~~de  236 (258)
T d2a7sa1         209 EEVTMEELGGAHTHMAKSGTAHYAASGE  236 (258)
T ss_dssp             CCCCHHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             CccChhhccCHhHhhhhccccceEeCCH
Confidence            88887764       4579999999854

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.15  E-value=0.00082  Score=59.41  Aligned_cols=164  Identities=13%  Similarity=0.075  Sum_probs=90.8

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      ++.-..|.-|.+. +.-++++...+.+..+++.+.+.. +-+|.|.-.     .|..+..-.....  ........+   
T Consensus       102 ~G~~v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~ds-----~Ga~~~~~~e~~~--~~~~~g~~~---  170 (287)
T d1pixa2         102 NGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNC-----SGVKFDEQEKVYP--NRRGGGTPF---  170 (287)
T ss_dssp             TTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECC-----CEECGGGHHHHSS--STTSTTHHH---
T ss_pred             ccceEEEEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEecC-----CcccCCcchhhcc--chhhHHHHH---
Confidence            3433334444444 567899999999999988887654 566666553     3444432111100  000001111   


Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccc--cccccCCCcHHHHHhhcChHH-HHHHHhc
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET--LIGFHPDAGASFYLSHLPGHL-GEFLALT  196 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~--~~Gl~p~~g~~~~l~r~~g~~-a~~l~lt  196 (357)
                      . -...+....+|+|++|-|.|.|||.-.+++||++++.+++.+.+.-.  --+..+..+........+... ..  -.+
T Consensus       171 ~-~~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge--~~~  247 (287)
T d1pixa2         171 F-RNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDR--TGK  247 (287)
T ss_dssp             H-HHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHT--TCC
T ss_pred             H-HHHHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhcc--ccc
Confidence            1 12335567899999999999999988888888888899887766322  222222222111111111111 00  123


Q ss_pred             CCCCCHHHH--HHcCccceecCCC
Q 018384          197 GAKLNGAEM--MACGLATHYSVSE  218 (357)
Q Consensus       197 G~~i~a~eA--~~~GLv~~vv~~~  218 (357)
                      -+.+.+.+.  ..-|.+|.+++++
T Consensus       248 ~eeLGGa~~H~~~sG~~d~v~~~e  271 (287)
T d1pixa2         248 TEPPGAVDIHYTETGFMREVYASE  271 (287)
T ss_dssp             CCCSSBHHHHTTTSCCSCEEESSH
T ss_pred             ccccccHHHhhhhcccceeecCCH
Confidence            344444443  3579999999764

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.69  E-value=0.014  Score=50.64  Aligned_cols=160  Identities=15%  Similarity=0.158  Sum_probs=101.1

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      +|...-|.-|+|. ....++++-.....+.++..+.. ++-+|.|.-. ..|..|.+-.             ........
T Consensus        68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pGf~~G~~~E-------------~~g~~~~g  132 (271)
T d2a7sa2          68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQE-------------YNGIIRRG  132 (271)
T ss_dssp             SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HHCHHHHH
T ss_pred             CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hhhhhhccHH-------------HhhHHHHH
Confidence            4444445556665 23589999999999999888764 4677777653 3455554322             12234556


Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhhh----ccCCeEEEeCceEEecccccccccCCCcHHHHHhh-cChHH-----
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPGHL-----  189 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~~g~~-----  189 (357)
                      .+++.++..+.+|.|+.|=|.++|+|....    +.+|++++.+++.++.       .++-|+...+.+ .+...     
T Consensus       133 a~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mgpegaa~v~~~~~l~~~~~~~~  205 (271)
T d2a7sa2         133 AKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGE  205 (271)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTTTTTTGGGTSSC
T ss_pred             HHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cCHHHHHHHHHHHhhhhhhhccc
Confidence            678899999999999999999999875432    3468887777776654       322333332222 22110     


Q ss_pred             -------HHHHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          190 -------GEFLALTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       190 -------a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                             ....-.....-++-.+.+.|++|.|+++.+...
T Consensus       206 ~~~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~  245 (271)
T d2a7sa2         206 DIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRG  245 (271)
T ss_dssp             CTTSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHH
Confidence                   011112233346677888999999999877653

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.65  E-value=0.013  Score=50.62  Aligned_cols=160  Identities=13%  Similarity=0.087  Sum_probs=99.4

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      .|...-|.-|+|. ...+++++-.....+.++..+.. ++-.|.|.-. ..|..|.+-.             .....+..
T Consensus        65 ~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E-------------~~g~~~~g  129 (264)
T d1vrga2          65 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQE-------------HGGIIRHG  129 (264)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHH
T ss_pred             cCceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHH-------------HHhHHHHH
Confidence            3444444456655 34579999999999999888764 4666666543 3355554322             12234556


Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhhhc----cCCeEEEeCceEEecccccccccCCCcHHHHHhh-cCh----H-H
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPG----H-L  189 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~~g----~-~  189 (357)
                      .+++.++..+.+|.|+.|=|.++|+|..-..    .+|++++.+++.++.       ..+-++...+.+ .+-    . .
T Consensus       130 a~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~  202 (264)
T d1vrga2         130 AKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEE  202 (264)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHH
T ss_pred             HHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHH
Confidence            7788999999999999999999998763322    488888777766654       322333332222 110    0 0


Q ss_pred             -HHHH--HhcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          190 -GEFL--ALTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       190 -a~~l--~ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                       ...+  .+.-+.-++-.+.+.|++|.|+++.+...
T Consensus       203 ~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~  238 (264)
T d1vrga2         203 TRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRK  238 (264)
T ss_dssp             HHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHH
Confidence             0000  01112236778889999999998877653

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.49  E-value=0.0097  Score=51.52  Aligned_cols=158  Identities=15%  Similarity=0.133  Sum_probs=98.8

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      +|.-.-|.-|+|. ...+++++-.....+.++..+.. ++-+|.|.-. ..|..|.+-.             .....+..
T Consensus        63 ~G~~vgvia~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~-pGf~~G~~~E-------------~~g~~~~g  127 (263)
T d1xnya2          63 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PGFLPGVDQE-------------HDGIIRRG  127 (263)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHH
T ss_pred             ccceEEEEecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc-cccccchhHH-------------HHhHHHHH
Confidence            3443334455554 34689999999999999888865 3666666543 3355554322             12234556


Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhhhc----cCCeEEEeCceEEecccccccccCCCcHHHHHhhcCh--------
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG--------  187 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g--------  187 (357)
                      .+++.++.++.+|.|+.|-|.++|+|.....    ..|++++.+++.++.-       ++-|+...+.+.-.        
T Consensus       128 a~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm-------~pe~aa~il~~~~~~~a~~~~~  200 (263)
T d1xnya2         128 AKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVM-------GAQGAVNILHRRTIADAGDDAE  200 (263)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTHHHHHSCCTTCS
T ss_pred             HHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhcc-------CHHHHHHHHHHHHHhhhccchH
Confidence            7788999999999999999999998765433    3688887777766643       33333333322110        


Q ss_pred             ---HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 018384          188 ---HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       188 ---~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                         .. ..+.  .-...++..+...|.+|.|+++.+...
T Consensus       201 ~~~~~~~~~~--~~~~~~p~~aA~~g~iD~VIdP~dTR~  237 (263)
T d1xnya2         201 ATRARLIQEY--EDALLNPYTAAERGYVDAVIMPSDTRR  237 (263)
T ss_dssp             SSHHHHHHHH--HHHHSSSHHHHHHTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHH--HHHhcCHHHHHHcccCCcccCHHHHHH
Confidence               01 1111  011234667888999999999877653

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.23  E-value=0.024  Score=48.99  Aligned_cols=159  Identities=15%  Similarity=0.083  Sum_probs=98.1

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHH
Q 018384           41 KANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  119 (357)
Q Consensus        41 ~~~v~~I~ln~p~-~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~  119 (357)
                      .|...-|.=|+|. ...+++++-.....+.++..+.- ++-+|.|.-. ..|..|-+-.             .....+..
T Consensus        65 ~G~~vgvian~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E-------------~~g~i~~g  129 (264)
T d1on3a2          65 NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQE-------------YGGIIRHG  129 (264)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHH
T ss_pred             ecceEEEEeccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHHH-------------HHHHHHHH
Confidence            3433334445554 45689999999999988888764 4667766543 3455554322             12245566


Q ss_pred             HHHHHHHhcCCCcEEEEEccceechhhhhhc----cCCeEEEeCceEEecccccccccCCCcHHHHHhhc-Ch----HHH
Q 018384          120 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PG----HLG  190 (357)
Q Consensus       120 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g----~~a  190 (357)
                      .+++.++.++.+|.|+.|=|.++|+|..-..    .+|++++.+++.++       ..++-|+...+.+. +.    ...
T Consensus       130 a~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~  202 (264)
T d1on3a2         130 AKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDA  202 (264)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHH
T ss_pred             HHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhh
Confidence            7788999999999999999999998764443    35677666665554       44333443333221 10    000


Q ss_pred             --HH-H-HhcCCCCCHHHHHHcCccceecCCCChh
Q 018384          191 --EF-L-ALTGAKLNGAEMMACGLATHYSVSEKLP  221 (357)
Q Consensus       191 --~~-l-~ltG~~i~a~eA~~~GLv~~vv~~~~l~  221 (357)
                        .+ + -..-+.-++-.+.+.|.+|.|+++.+..
T Consensus       203 ~~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR  237 (264)
T d1on3a2         203 MRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTR  237 (264)
T ss_dssp             HHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHH
T ss_pred             hhHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHH
Confidence              00 0 1111123567788899999999887754

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=95.71  E-value=0.13  Score=45.04  Aligned_cols=148  Identities=16%  Similarity=0.050  Sum_probs=90.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEE
Q 018384           55 LNALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  134 (357)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI  134 (357)
                      .-+++++-.....+.++.+++. .+-+|.|.-. ..|-.|-+-.             .....+...+++.++.++.+|.|
T Consensus        96 ~G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pGf~~g~~~E-------------~~g~~r~ga~~~~a~~~~~VP~i  160 (299)
T d1pixa3          96 GGKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAE-------------KAELLGLGQSLIYSIQTSHIPQF  160 (299)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCCCEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CCcccchHHH-------------hhhHHHHHHHHHHHHHhhcceeE
Confidence            4578999999999999988865 3666666543 3355553321             12234555678888999999999


Q ss_pred             EEEccceechhhhhhcc----CCeEEEeCceEEecccccccccCCCcHHHHHh-hcChHH-----------H--HHHHh-
Q 018384          135 AILNGVTMGGGAGVSIP----GTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHL-----------G--EFLAL-  195 (357)
Q Consensus       135 a~v~G~a~GgG~~lal~----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-r~~g~~-----------a--~~l~l-  195 (357)
                      +.|=|.++|+|......    .|++++     +..|..++|+.++-++...+. +.+...           .  .++.- 
T Consensus       161 svi~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~  235 (299)
T d1pixa3         161 EITLRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA  235 (299)
T ss_dssp             EEECSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             EEEecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            99999999988543332    343321     223445556554444443332 222110           0  01100 


Q ss_pred             cCCCCCHHHHHHcCccceecCCCChhH
Q 018384          196 TGAKLNGAEMMACGLATHYSVSEKLPL  222 (357)
Q Consensus       196 tG~~i~a~eA~~~GLv~~vv~~~~l~~  222 (357)
                      .-+.-++..+.+.|+||.|+++.+...
T Consensus       236 ~~~~~sp~~aAs~~~iD~IIDP~dTR~  262 (299)
T d1pixa3         236 FYTKSRPKVCAELGLVDEIVDMNKIRG  262 (299)
T ss_dssp             HHHTTSHHHHHHHTSSSEECCTTTHHH
T ss_pred             HHHhcCHHHHHHhCCcCeeECHHHHHH
Confidence            012347778889999999999888654

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.82  E-value=0.018  Score=51.29  Aligned_cols=69  Identities=13%  Similarity=0.156  Sum_probs=50.1

Q ss_pred             CCCcEEEEEccceechhhhhhccCCeEEEeCceEEecccccccccCCCcHHHHHhhcChHHHHHHHhcCCCC--CH----
Q 018384          129 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL--NG----  202 (357)
Q Consensus       129 ~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i--~a----  202 (357)
                      -.+|+|++|.|.|+|+|.-++..||++|+.+++.+.+.           +...+..          .+|+.+  +.    
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt-----------Gp~~l~~----------~lG~eVy~s~~eLG  297 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT-----------GAPAINK----------MLGREVYTSNLQLG  297 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS-----------CHHHHHH----------HSSSCCCSCTHHHH
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee-----------CHHHHHH----------hcCccccCChhHhC
Confidence            46999999999999999999999999999998765543           1111222          345544  32    


Q ss_pred             --HHHHHcCccceecCCC
Q 018384          203 --AEMMACGLATHYSVSE  218 (357)
Q Consensus       203 --~eA~~~GLv~~vv~~~  218 (357)
                        +-..+-|.++.++++|
T Consensus       298 G~~i~~~nGv~h~~a~dd  315 (333)
T d1uyra1         298 GTQIMYNNGVSHLTAVDD  315 (333)
T ss_dssp             SHHHHHHHTSSSEEESSH
T ss_pred             CHhHHhhCCCceEEeCCH
Confidence              2335789999999854

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.97  E-value=0.16  Score=45.90  Aligned_cols=108  Identities=14%  Similarity=0.135  Sum_probs=66.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEEecCCCccccccChHHHHHhhccCChHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 018384           56 NALNTNMGAKLNKLFKAWENDPNIGFVSMKGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  135 (357)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa  135 (357)
                      -.+.++-...-.+.+..+....++-+|+|.-. ..|+.|-+-..             ....+....++.++.++.+|+|.
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~-pGF~~G~~~E~-------------~gilr~GA~iv~A~~~~~vP~i~  173 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRDMF-------------NEVLKYGSFIVDALVDYKQPIII  173 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCC-CCBCC-------------------CTHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeecC-CcccCcHHHHH-------------HHHHHHHHHHHHHHHhcCCCEEE
Confidence            46778888888888887776556777766543 66887764211             12334456688899999999999


Q ss_pred             EE--ccceechhhhhhc---cCCeEEEeCceEEecccccccccCCCcHHHHH
Q 018384          136 IL--NGVTMGGGAGVSI---PGTFRVACGKTVFATPETLIGFHPDAGASFYL  182 (357)
Q Consensus       136 ~v--~G~a~GgG~~lal---~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l  182 (357)
                      .|  .|.+.||++.+.-   ..|..     ..|+.|..+.|+.++-|+.-.+
T Consensus       174 vI~~~g~~~GGa~vv~~~~~~~~~~-----~~yAwP~a~~gVm~pEGav~I~  220 (404)
T d1uyra2         174 YIPPTGELRGGSWVVVDPTINADQM-----EMYADVNARAGVLEPQGMVGIK  220 (404)
T ss_dssp             EECTTCEEEHHHHHTTCGGGGTTTE-----EEEEETTCEEESSCHHHHHHHH
T ss_pred             EEeCCcccchhhhhcccCccCCccc-----eEEECCccccccCChhhhhhhe
Confidence            99  6777776654432   12221     1345555566666555555444

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.2  Score=42.66  Aligned_cols=95  Identities=8%  Similarity=0.054  Sum_probs=66.0

Q ss_pred             hhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HhhhcCCHHHHHHHHHHhhccCCCC-hhhHHHH
Q 018384          183 SHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPD-KNSVIHR  259 (357)
Q Consensus       183 ~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  259 (357)
                      .+.+... |.++-+--+.++.++.           .+.+.+.+..+ .+++..+|.+++..|+.++...... .......
T Consensus       167 g~~~~a~eA~~~Glv~~vv~~~~l-----------~~~~~~~a~~~a~~i~~~~p~a~~~~K~~l~~~~~~~~~~~l~~e  235 (266)
T d1hzda_         167 ARVLDGKEAKAVGLISHVLEQNQE-----------GDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIE  235 (266)
T ss_dssp             TCEEEHHHHHHHTSCSEEECCCTT-----------SCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             CCccCHHHhhcccccccccChhhh-----------hhHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3455556 8888887777766542           12344445445 6778899999999999987655433 3344455


Q ss_pred             HHHHHHHc-CCCCHHHHHHHHhcccCCCCC
Q 018384          260 IDIVDKCF-GLDTVEEIIDSLESEASLIND  288 (357)
Q Consensus       260 ~~~~~~~~-~~~~~e~i~~~l~~~~~~~~~  288 (357)
                      ...+..++ +.+..|++.+|+|||.|++..
T Consensus       236 ~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~G  265 (266)
T d1hzda_         236 EACYAQTIPTKDRLEGLLAFKEKRPPRYKG  265 (266)
T ss_dssp             HHHHHTTTTCHHHHHHHHHHTTTSCCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHhCCCCCCCCC
Confidence            66777888 567888899999999887654

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=86.88  E-value=0.23  Score=42.21  Aligned_cols=90  Identities=11%  Similarity=0.023  Sum_probs=62.7

Q ss_pred             hhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHH
Q 018384          183 SHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (357)
Q Consensus       183 ~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (357)
                      .+.+... |.++-+-.+.++.+++.+           ...+.++.+   +..+|.++...|+.++...............
T Consensus       171 g~~i~a~eA~~~Glv~~vv~~~~l~~-----------~a~~~a~~l---a~~~~~al~~~K~~l~~~~~~~~~~~~~e~~  236 (263)
T d1wz8a1         171 NEPLTGEEAERLGLVALAVEDEKVYE-----------KALEVAERL---AQGPKEALHHTKHALNHWYRSFLPHFELSLA  236 (263)
T ss_dssp             TCCEEHHHHHHHTSSSEEECGGGHHH-----------HHHHHHHHH---HTSCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             ccccchhHHHhcCCcccccchhhhhH-----------HHHHHHHHh---hccHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            3445555 888888888888777553           233455544   4678999999998887654444444555566


Q ss_pred             HHHHHc-CCCCHHHHHHHHhcccCCC
Q 018384          262 IVDKCF-GLDTVEEIIDSLESEASLI  286 (357)
Q Consensus       262 ~~~~~~-~~~~~e~i~~~l~~~~~~~  286 (357)
                      .+..+| +.+..|++.+|+|||.|++
T Consensus       237 ~~~~~~~s~d~~Egi~Af~eKR~P~f  262 (263)
T d1wz8a1         237 LEFLGFSGKELEEGLKALKEKRPPEF  262 (263)
T ss_dssp             HHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHccCHHHHHHHHHHhCCCCCCC
Confidence            666777 6788889999999998765

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.73  E-value=0.36  Score=40.84  Aligned_cols=88  Identities=10%  Similarity=0.101  Sum_probs=57.4

Q ss_pred             cChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCC-CChhhHHHHHHH
Q 018384          185 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVY-PDKNSVIHRIDI  262 (357)
Q Consensus       185 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  262 (357)
                      .+... |.++-+-.+.++.++..+           +..+.+..+   +..+|.++...|+.++.... +.......+...
T Consensus       168 ~~~a~eA~~~Glv~~vv~~~~l~~-----------~a~~~a~~i---~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~  233 (258)
T d2fw2a1         168 KLTAREACAKGLVSQVFLTGTFTQ-----------EVMIQIKEL---ASYNAIVLEECKALVRCNIKLELEQANERECEV  233 (258)
T ss_dssp             EEEHHHHHHTTSCSEEECSTTHHH-----------HHHHHHHHH---TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccc-----------ccchhhhhh---hhhhHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            34444 777777777777665432           233455554   46788888888887765432 222334445667


Q ss_pred             HHHHc-CCCCHHHHHHHHhcccCCC
Q 018384          263 VDKCF-GLDTVEEIIDSLESEASLI  286 (357)
Q Consensus       263 ~~~~~-~~~~~e~i~~~l~~~~~~~  286 (357)
                      +.++| +.+..|++.+++|||.|++
T Consensus       234 ~~~~~~s~d~~Egi~af~EKR~p~f  258 (258)
T d2fw2a1         234 LRKIWSSAQGIESMLKYVENKIDEF  258 (258)
T ss_dssp             HHHHHTSHHHHHHHHHHHHSSCCCC
T ss_pred             HHHHhCCHHHHHHHHHHhCCCCCCC
Confidence            88888 5788889999999998754

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.35  E-value=0.59  Score=40.24  Aligned_cols=91  Identities=10%  Similarity=-0.075  Sum_probs=59.9

Q ss_pred             hhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccCCCChhhHHHHHH
Q 018384          183 SHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  261 (357)
Q Consensus       183 ~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (357)
                      .+.+... |.++-+--+.++.++..+           ...+.++.+   +..+|.+++..|+.++...............
T Consensus       199 g~~~~a~eA~~~Glv~~vv~~~el~~-----------~~~~~a~~l---~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~  264 (297)
T d1q52a_         199 GRTYTAEQMHQMGAVNAVAEHAELET-----------VGLQWAAEI---NAKSPQAQRMLKFAFNLLDDGLVGQQLFAGE  264 (297)
T ss_dssp             CCEECHHHHHHHTSCSEEECGGGHHH-----------HHHHHHHHH---HTSCHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             ccccchHhhhhhccccccCchHHhhH-----------HHHHHhhhh---ccCCHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence            3455556 899988888888877652           233445555   4568888888888776543322222223345


Q ss_pred             HHHHHc-CCCCHHHHHHHHhcccCCCC
Q 018384          262 IVDKCF-GLDTVEEIIDSLESEASLIN  287 (357)
Q Consensus       262 ~~~~~~-~~~~~e~i~~~l~~~~~~~~  287 (357)
                      .+..++ +.+..|++.+|+|||.|++.
T Consensus       265 ~~~~~~~s~d~~Egv~AF~eKR~P~f~  291 (297)
T d1q52a_         265 ATRLAYMTDEAVEGRDAFLQKRPPDWS  291 (297)
T ss_dssp             HHHHHHTSHHHHHHHHHHHTTSCCCCT
T ss_pred             HHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence            566677 45677889999999988653