Citrus Sinensis ID: 018385

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
MQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPFSNRYT
cEEEEEEEEEccccEEEEEEEEEEEEEccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccccEEEEEEEccccccccEEEEEEEEEEEccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHcHHHHHccccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEccEEEEEEcccccccccccccccccccccc
ccEEEEEEEccccccEEEEEEccccEEcEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccEEEEEEEEccccccccccEEEEEEEEEEccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEccEEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccEEEEEccEEEEEEEEEEcccccccccccccccccc
mqvgltlgletqkgtLKLSLVDcgcyvkdisikldggASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLqslpkeipvddhaslnitfvdnplltsssiefDINGLFTarkkasipnyynsnlqppvfcsdqskmlGISLDEAVLNSASALYYDAEFMQwtvdkvpdqsllntagwrfiipqlyrkypnddmnlnislssppvirvaednidatVHADLIIDVlesgevipVACISLVIHGSCSVKILrnnlggsvklngftmsltwskigkLRLYLIQPVVWAVIQTVFVPyvnshlgqgfplpiihgftvksAEIICssskitvcsdvayadshnlnqifipfsnryt
mqvgltlgletqkgtlkLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADshnlnqifipfsnryt
MQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPFSNRYT
*****TLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPF*****
MQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNY****************MLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNL************
MQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPFSNRYT
MQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPF*****
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MQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPFSNRYT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query357 2.2.26 [Sep-21-2011]
Q9MAU5488 Putative BPI/LBP family p yes no 0.971 0.711 0.634 1e-132
Q8VYC2515 Putative BPI/LBP family p no no 0.935 0.648 0.410 9e-80
P18428481 Lipopolysaccharide-bindin yes no 0.854 0.634 0.255 6e-23
Q2TBI0481 Lipopolysaccharide-bindin yes no 0.837 0.621 0.240 7e-23
P17213487 Bactericidal permeability no no 0.837 0.613 0.249 8e-20
Q61805481 Lipopolysaccharide-bindin yes no 0.843 0.625 0.232 4e-19
Q6AXU0482 Bactericidal permeability yes no 0.876 0.649 0.230 7e-18
Q28739445 Bactericidal permeability no no 0.801 0.642 0.248 3e-16
Q63313481 Lipopolysaccharide-bindin no no 0.924 0.686 0.225 4e-16
P17453482 Bactericidal permeability no no 0.848 0.628 0.258 9e-16
>sp|Q9MAU5|Y1049_ARATH Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1 Back     alignment and function desciption
 Score =  473 bits (1216), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 220/347 (63%), Positives = 284/347 (81%)

Query: 1   MQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENA 60
           M++GL+LGL++ +G LKLSL +CGC+V+DI+I+L+GGASW YQGM+NAF++QI S+VE+ 
Sbjct: 140 MEIGLSLGLKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGMVNAFKDQIGSSVEST 199

Query: 61  ITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKA 120
           I KKL EG+S LDS LQSLPKEIPVDD+A LN+TF  +P+L +SSI F+I+GLFT  +  
Sbjct: 200 IAKKLTEGVSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSSITFEIDGLFTKGETN 259

Query: 121 SIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNT 180
            +   +       V C   SKMLGIS+DEAV NSA+ALYY+A+F+QW VDK+P+QSLLNT
Sbjct: 260 QVLKSFFKKSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFVQWVVDKIPEQSLLNT 319

Query: 181 AGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVA 240
           A WRFIIPQLY+KYPN DMNLNISLSSPP+++++E  + A V+ADL+I+VL++ +VIPVA
Sbjct: 320 ARWRFIIPQLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNADLVINVLDANQVIPVA 379

Query: 241 CISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPY 300
           CISL+I GS +++++ NNLGGSV L  F+MSL WS IG L L+L+QP+VW VIQTVFVPY
Sbjct: 380 CISLMIRGSGALRVMGNNLGGSVSLEDFSMSLKWSNIGNLHLHLLQPIVWTVIQTVFVPY 439

Query: 301 VNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQ 347
            N HL +GFPLPI+HGFT+++AEIICS S+ITVCSDVAY DS    Q
Sbjct: 440 ANDHLEKGFPLPIMHGFTLQNAEIICSESEITVCSDVAYLDSSQQPQ 486

Arabidopsis thaliana (taxid: 3702)
>sp|Q8VYC2|Y2070_ARATH Putative BPI/LBP family protein At3g20270 OS=Arabidopsis thaliana GN=At3g20270 PE=2 SV=1 Back     alignment and function description
>sp|P18428|LBP_HUMAN Lipopolysaccharide-binding protein OS=Homo sapiens GN=LBP PE=1 SV=3 Back     alignment and function description
>sp|Q2TBI0|LBP_BOVIN Lipopolysaccharide-binding protein OS=Bos taurus GN=LBP PE=2 SV=1 Back     alignment and function description
>sp|P17213|BPI_HUMAN Bactericidal permeability-increasing protein OS=Homo sapiens GN=BPI PE=1 SV=4 Back     alignment and function description
>sp|Q61805|LBP_MOUSE Lipopolysaccharide-binding protein OS=Mus musculus GN=Lbp PE=2 SV=2 Back     alignment and function description
>sp|Q6AXU0|BPI_RAT Bactericidal permeability-increasing protein OS=Rattus norvegicus GN=Bpi PE=2 SV=1 Back     alignment and function description
>sp|Q28739|BPI_RABIT Bactericidal permeability-increasing protein (Fragment) OS=Oryctolagus cuniculus GN=BPI PE=2 SV=1 Back     alignment and function description
>sp|Q63313|LBP_RAT Lipopolysaccharide-binding protein OS=Rattus norvegicus GN=Lbp PE=2 SV=1 Back     alignment and function description
>sp|P17453|BPI_BOVIN Bactericidal permeability-increasing protein OS=Bos taurus GN=BPI PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
225447199 498 PREDICTED: putative BPI/LBP family prote 0.977 0.700 0.755 1e-155
224131712 492 predicted protein [Populus trichocarpa] 0.971 0.705 0.752 1e-153
255576107417 Lipopolysaccharide-binding protein precu 0.980 0.839 0.725 1e-148
18390462 488 lipid-binding serum glycoprotein-like pr 0.971 0.711 0.634 1e-131
30679067349 lipid-binding serum glycoprotein-like pr 0.957 0.979 0.640 1e-130
21593323 488 unknown [Arabidopsis thaliana] 0.957 0.700 0.637 1e-130
297843298 501 hypothetical protein ARALYDRAFT_887673 [ 0.971 0.692 0.634 1e-129
357493077 530 hypothetical protein MTR_5g084690 [Medic 0.971 0.654 0.649 1e-129
147854318 558 hypothetical protein VITISV_009101 [Viti 0.977 0.625 0.570 1e-118
359494081 501 PREDICTED: putative BPI/LBP family prote 0.977 0.696 0.564 1e-118
>gi|225447199|ref|XP_002272020.1| PREDICTED: putative BPI/LBP family protein At3g20270 [Vitis vinifera] gi|297739241|emb|CBI28892.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/352 (75%), Positives = 311/352 (88%), Gaps = 3/352 (0%)

Query: 1   MQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENA 60
           M+VGLTLGLE ++G++KLS  DCGCYV+DISIKLDGGASWLYQG+++AFEEQI SAVE+ 
Sbjct: 141 MEVGLTLGLENREGSMKLSAKDCGCYVEDISIKLDGGASWLYQGVVDAFEEQIGSAVEST 200

Query: 61  ITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKA 120
           ITKKLKEGI KLDS LQ+LPKEIPVD+ ASLN+TFV++PLL++SSI FDINGLFT     
Sbjct: 201 ITKKLKEGIIKLDSFLQALPKEIPVDNIASLNVTFVNDPLLSNSSIGFDINGLFTRANAT 260

Query: 121 SIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNT 180
           ++P YY  N + PV C+D SKMLGISLDEAVLNSASALY++AEFMQW VDKVPDQSLLNT
Sbjct: 261 TLPKYYQ-NSRHPVSCTDPSKMLGISLDEAVLNSASALYFNAEFMQWIVDKVPDQSLLNT 319

Query: 181 AGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVA 240
           AGWRFI+PQLY+KYPNDDMN+NISLS+PPVI+++ +N+DA V+ADLIIDVLES EVIPVA
Sbjct: 320 AGWRFIVPQLYKKYPNDDMNMNISLSTPPVIKISPNNVDAIVYADLIIDVLESQEVIPVA 379

Query: 241 CISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPY 300
           CISLVIH S SVKI  NNL GSVKLN FTMSL WSKIG LR++LIQPV+W +I+TVF+PY
Sbjct: 380 CISLVIHASGSVKIAGNNLAGSVKLNDFTMSLKWSKIGNLRMFLIQPVIWTLIETVFLPY 439

Query: 301 VNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHNLNQIFIPF 352
           VN HLG+GFPLPIIHGFT+++AEIICS SKITVCS+VAY D  NLNQ  +PF
Sbjct: 440 VNVHLGKGFPLPIIHGFTLQNAEIICSYSKITVCSNVAYEDPQNLNQ--LPF 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224131712|ref|XP_002321159.1| predicted protein [Populus trichocarpa] gi|222861932|gb|EEE99474.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576107|ref|XP_002528948.1| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis] gi|223531594|gb|EEF33422.1| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18390462|ref|NP_563724.1| lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana] gi|75264940|sp|Q9MAU5.1|Y1049_ARATH RecName: Full=Putative BPI/LBP family protein At1g04970; Flags: Precursor gi|7211993|gb|AAF40464.1|AC004809_22 ESTs gb|T76367 and gb|AA404955 come from this gene [Arabidopsis thaliana] gi|28393732|gb|AAO42277.1| unknown protein [Arabidopsis thaliana] gi|28973365|gb|AAO64007.1| unknown protein [Arabidopsis thaliana] gi|332189650|gb|AEE27771.1| lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30679067|ref|NP_849593.1| lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana] gi|332189651|gb|AEE27772.1| lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593323|gb|AAM65272.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297843298|ref|XP_002889530.1| hypothetical protein ARALYDRAFT_887673 [Arabidopsis lyrata subsp. lyrata] gi|297335372|gb|EFH65789.1| hypothetical protein ARALYDRAFT_887673 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357493077|ref|XP_003616827.1| hypothetical protein MTR_5g084690 [Medicago truncatula] gi|355518162|gb|AES99785.1| hypothetical protein MTR_5g084690 [Medicago truncatula] Back     alignment and taxonomy information
>gi|147854318|emb|CAN83425.1| hypothetical protein VITISV_009101 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359494081|ref|XP_002277143.2| PREDICTED: putative BPI/LBP family protein At3g20270-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
TAIR|locus:2010592488 AT1G04970 [Arabidopsis thalian 0.957 0.700 0.640 4.6e-121
TAIR|locus:2092334722 AT3G20270 [Arabidopsis thalian 0.932 0.461 0.411 1.7e-73
ZFIN|ZDB-GENE-070912-360472 si:dkey-11f4.4 "si:dkey-11f4.4 0.949 0.718 0.233 8e-27
UNIPROTKB|F1MNN7481 LBP "Lipopolysaccharide-bindin 0.865 0.642 0.241 4.5e-26
UNIPROTKB|P18428481 LBP "Lipopolysaccharide-bindin 0.865 0.642 0.249 4.5e-26
UNIPROTKB|Q2TBI0481 LBP "Lipopolysaccharide-bindin 0.865 0.642 0.238 2.1e-25
UNIPROTKB|F1NXX9361 BPI "Uncharacterized protein" 0.929 0.919 0.224 1.6e-24
UNIPROTKB|I3L5U6481 LBP "Uncharacterized protein" 0.868 0.644 0.245 1.7e-24
UNIPROTKB|I3LFA0483 BPI "Uncharacterized protein" 0.857 0.633 0.265 2.2e-24
UNIPROTKB|F1MQ17440 BPI "Bactericidal permeability 0.843 0.684 0.260 2.8e-24
TAIR|locus:2010592 AT1G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 219/342 (64%), Positives = 283/342 (82%)

Query:     1 MQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENA 60
             M++GL+LGL++ +G LKLSL +CGC+V+DI+I+L+GGASW YQGM+NAF++QI S+VE+ 
Sbjct:   140 MEIGLSLGLKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGMVNAFKDQIGSSVEST 199

Query:    61 ITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKA 120
             I KKL EG+S LDS LQSLPKEIPVDD+A LN+TF  +P+L +SSI F+I+GLFT  +  
Sbjct:   200 IAKKLTEGVSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSSITFEIDGLFTKGETN 259

Query:   121 SIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNT 180
              +   +       V C   SKMLGIS+DEAV NSA+ALYY+A+F+QW VDK+P+QSLLNT
Sbjct:   260 QVLKSFFKKSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFVQWVVDKIPEQSLLNT 319

Query:   181 AGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVA 240
             A WRFIIPQLY+KYPN DMNLNISLSSPP+++++E  + A V+ADL+I+VL++ +VIPVA
Sbjct:   320 ARWRFIIPQLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNADLVINVLDANQVIPVA 379

Query:   241 CISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPY 300
             CISL+I GS +++++ NNLGGSV L  F+MSL WS IG L L+L+QP+VW VIQTVFVPY
Sbjct:   380 CISLMIRGSGALRVMGNNLGGSVSLEDFSMSLKWSNIGNLHLHLLQPIVWTVIQTVFVPY 439

Query:   301 VNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAYADS 342
              N HL +GFPLPI+HGFT+++AEIICS S+ITVCSDVAY DS
Sbjct:   440 ANDHLEKGFPLPIMHGFTLQNAEIICSESEITVCSDVAYLDS 481
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008289 "lipid binding" evidence=IEA;ISS
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2092334 AT3G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-360 si:dkey-11f4.4 "si:dkey-11f4.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNN7 LBP "Lipopolysaccharide-binding protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P18428 LBP "Lipopolysaccharide-binding protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBI0 LBP "Lipopolysaccharide-binding protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXX9 BPI "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3L5U6 LBP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LFA0 BPI "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQ17 BPI "Bactericidal permeability-increasing protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9MAU5Y1049_ARATHNo assigned EC number0.63400.97190.7110yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025982001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (498 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
cd00026200 cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bac 5e-53
cd00264208 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal pe 2e-23
smart00329202 smart00329, BPI2, BPI/LBP/CETP C-terminal domain 3e-22
pfam02886238 pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family 5e-22
cd00025223 cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bac 1e-19
cd00264208 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal pe 5e-09
pfam01273163 pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family, 2e-05
>gnl|CDD|237993 cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information 
 Score =  173 bits (441), Expect = 5e-53
 Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 3/199 (1%)

Query: 142 MLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQSLLNTAGWRFIIPQLYRKYPNDDM 199
           M+ +++ E V NSA+ +Y+ A  +   +  D  P +S L T+ +   IP+L +KYPN   
Sbjct: 1   MVYLAVSEHVFNSAALVYFQAGALNLLLTDDMPPSKSRLTTSIFGIFIPELAKKYPNMPQ 60

Query: 200 NLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEV-IPVACISLVIHGSCSVKILRNN 258
            L IS+SSPP + ++E         D+ I          P+  + +    S  + + +  
Sbjct: 61  QLKISVSSPPHLVLSEGGATLAQQLDVEIFATLPDSQLRPLFRLGVDTSSSAQLSVSKKK 120

Query: 259 LGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFT 318
           L GS+ L+ F + L  S IG     L+Q ++  +++   +P VN  L +GFPLP+   FT
Sbjct: 121 LIGSLNLDRFLLELKSSNIGSFIPELLQAILTTILEITVLPNVNDKLRRGFPLPLPKNFT 180

Query: 319 VKSAEIICSSSKITVCSDV 337
           +  AEI      + + +DV
Sbjct: 181 LYDAEIQVHKDFLLLGADV 199

; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide. Length = 200
>gnl|CDD|238164 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>gnl|CDD|128624 smart00329, BPI2, BPI/LBP/CETP C-terminal domain Back     alignment and domain information
>gnl|CDD|202449 pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family, C-terminal domain Back     alignment and domain information
>gnl|CDD|237992 cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>gnl|CDD|238164 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>gnl|CDD|216404 pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 357
KOG4160492 consensus BPI/LBP/CETP family protein [Defense mec 100.0
PF02886238 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-termina 100.0
smart00329202 BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal 100.0
cd00026200 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal 100.0
smart00328225 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal 99.9
cd00025223 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal 99.89
cd00264208 BPI BPI/LBP/CETP domain; Bactericidal permeability 99.89
PF01273164 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal 99.39
cd00264208 BPI BPI/LBP/CETP domain; Bactericidal permeability 99.29
PF14613164 DUF4449: Protein of unknown function (DUF4449) 93.27
smart00700225 JHBP Juvenile hormone binding protein domains in i 86.29
PF06585248 JHBP: Haemolymph juvenile hormone binding protein 80.41
>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-52  Score=414.66  Aligned_cols=340  Identities=30%  Similarity=0.481  Sum_probs=306.2

Q ss_pred             CeeeeEEEee-C-CCCcEEEEeeeceeeeccEEEEEcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 018385            1 MQVGLTLGLE-T-QKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQ   77 (357)
Q Consensus         1 ~~~~~~~~l~-~-~~G~p~v~~~~C~~~i~~~~v~~~gg~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i-~~ln~~L~   77 (357)
                      |+..+.+.+. + .+|+|.++...|++.++++++++++-.+|+++.|.+.+++.||+.++.++|+.+.+.+ .++|.+++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~C~~~~~~l~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~  215 (492)
T KOG4160|consen  136 MDIQINLSLGSDIGDGKPAVSDSSCSAAISDLHVQMGSLASWLIQLFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQ  215 (492)
T ss_pred             ceEEEeeeeeccCCCCcceeeeecceeEeeeeEeecCCCcHHHHHHHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhc
Confidence            3445555555 4 7899999999999999999999885599999999999999999999999999999999 58999999


Q ss_pred             cCcccccccceEEEEEeecCCCeeecceeeeeeeeEEEc-CCCCCCCCCCCCCCCCCC-CCCCCCCeEEEEechhHHHHH
Q 018385           78 SLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTA-RKKASIPNYYNSNLQPPV-FCSDQSKMLGISLDEAVLNSA  155 (357)
Q Consensus        78 ~lp~~~~~~~~~~ldysl~~~P~it~~~i~~~l~G~~~~-~~~~~~~p~~~~~~p~~~-~~~~~~~M~~i~lS~y~~NS~  155 (357)
                      ++|+..++|+.+.+||+++++|.+|+++++++++|++++ .++...+    +..|... .++++++|+++++|||++||+
T Consensus       216 ~~~~~~~~d~~~~Idysl~~~P~~t~~~i~l~~~G~i~~~~~~~~~~----~~~p~~~~~~~~~~~Mi~i~vSe~v~nSl  291 (492)
T KOG4160|consen  216 TLPVSISVDSNAGIDYSLLGPPAITSSYIELDLKGEIFYSLGQVTPP----FPLPIVSPTPLSNSRMIYIYVSEYVFNSL  291 (492)
T ss_pred             cCCcceecccccceeeEeccCCceecceEEEeeeeeEEeccCCCCCc----ccCCcccccCCCCCceEEEEEhhhhhhHH
Confidence            999999999999999999999999999999999999999 5554433    3333332 334468999999999999999


Q ss_pred             HHHHHhcCcceEEe-c-cCCCCC--Ccchhh--HhhhcHHHHhhCCCCceEEEEeeCCCCeEEEEeCcEEEEEEEEEEEE
Q 018385          156 SALYYDAEFMQWTV-D-KVPDQS--LLNTAG--WRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIID  229 (357)
Q Consensus       156 l~~~~~~g~l~~~v-~-~iP~~~--~L~Ts~--~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~v~~~~~v~~~  229 (357)
                      ++++|++|.+++.+ + +.|.++  .++|+.  +|+++|+++++|||+++++++++.+||.+.|++++..+...+.+.++
T Consensus       292 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~g~~lp~l~~~~Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~  371 (492)
T KOG4160|consen  292 LLHAYQAGLLKLLIDSDKPPVDSLKLLTTSGFCIGDLLPELAEQYPNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVF  371 (492)
T ss_pred             HHHHHHhCceeEEEcCcCCCcccccccccceeechhhhHHHHHHCCCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEE
Confidence            99999999999999 3 344434  456664  67799999999999999999999999999999999999999999886


Q ss_pred             E-eCCCceeeEEEEEEEEEEEEEEEEEccEEEEEEEeceEEEEEeeecCCccccccHHHHHHHHHHHhhHHHHHhhccCC
Q 018385          230 V-LESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQG  308 (357)
Q Consensus       230 v-~~~~~~~~~~~l~~~~~~~~~~~v~~~~l~~~~~~~~~~l~l~~S~iG~~~~~~L~~~i~~~l~~~~~P~lN~~L~~G  308 (357)
                      + .++++.++++++++++++.++++++++++.|++++.+++++.++|++|.++.+.++.+++.+.+.++.|.+|++|++|
T Consensus       372 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~s~~~~i~~~~l~~~~~~~~~~~l~p~~n~~L~~G  451 (492)
T KOG4160|consen  372 VVPPSSTNQPLFTLTVDANVSATLSLSGNKLIGNLSLNKFKIEVKFSNIGGISLDSLQALLSTLSKSVLQPLVNSKLRKG  451 (492)
T ss_pred             EecCCcccceeEEEEEEEEEEEEEEEeeeeEEEEEEEeeeEEEEeecccCCccHHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence            5 566678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCeeEeeeEEEEEcCEEEEEeeeeEcCccC
Q 018385          309 FPLPIIHGFTVKSAEIICSSSKITVCSDVAYADSHN  344 (357)
Q Consensus       309 ~pLP~~~~~~l~n~~i~~~~~~l~i~~D~~~~~~~~  344 (357)
                      ||||.+.++++.|+++.+++|+|++++||.|.+...
T Consensus       452 ~~lp~~~~~~~~~~~i~~~~~~L~l~~D~~~~~~~~  487 (492)
T KOG4160|consen  452 FPLPIPDGFKLINPEISIVDGFLLLSADFLYKRTLL  487 (492)
T ss_pred             ccccccccceeecceEEEecCeEEEeccccchhhhh
Confidence            999999999999999999999999999999998844

>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins Back     alignment and domain information
>smart00329 BPI2 BPI/LBP/CETP C-terminal domain Back     alignment and domain information
>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain Back     alignment and domain information
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins Back     alignment and domain information
>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria Back     alignment and domain information
>PF14613 DUF4449: Protein of unknown function (DUF4449) Back     alignment and domain information
>smart00700 JHBP Juvenile hormone binding protein domains in insects Back     alignment and domain information
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
1bp1_A456 Crystal Structure Of Bpi, The Human Bactericidal Pe 2e-21
1ewf_A456 The 1.7 Angstrom Crystal Structure Of Bpi Length = 6e-21
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal Permeability-Increasing Protein Length = 456 Back     alignment and structure 
Iteration: 1

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 149/321 (46%), Gaps = 22/321 (6%)
Query: 5   LTLGLETQKGTLKLSLVDCGCYVKDISIKL-DGGASWLYQGMINAFEEQIVSAVENAITK 63
           L LG     G   ++   C  ++  + + +      WL    I  F ++I SA+ N +  
Sbjct: 117 LKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWL----IQLFHKKIESALRNKMNS 172
Query: 64  KLKEGI-----SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARK 118
           ++ E +     SKL    Q+LP    +D  A +N   V  P  T+ +++  + G F +  
Sbjct: 173 QVCEKVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSEN 232
Query: 119 KASIPNYYNSNLQPPV--FCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPD 174
             + P +      PPV  F +   +M+ + L +   N+A  +Y +A  ++ T+  D +P 
Sbjct: 233 HHNPPPF-----APPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPK 287
Query: 175 QS--LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADL-IIDVL 231
           +S   L T  +   +P++ +K+PN  + +++S S+PP + V    +      D+    VL
Sbjct: 288 ESKFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVL 347
Query: 232 ESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWA 291
            +  +  +  I +   GS  V    N L G +KL+   + L  S IG   + L+Q ++  
Sbjct: 348 PNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNY 407
Query: 292 VIQTVFVPYVNSHLGQGFPLP 312
           ++  + +P VN  L +GFPLP
Sbjct: 408 IVPILVLPRVNEKLQKGFPLP 428
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi Length = 456 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
1ewf_A456 BPI, bactericidal/permeability-increasing protein; 5e-69
2obd_A476 Cholesteryl ester transfer protein; lipid transfer 5e-67
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A* Length = 456 Back     alignment and structure
 Score =  222 bits (567), Expect = 5e-69
 Identities = 76/346 (21%), Positives = 153/346 (44%), Gaps = 10/346 (2%)

Query: 1   MQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGG-ASWLYQGMINAFEEQIVSAVEN 59
           +   L LG     G   ++   C  ++  + + +      WL Q      E  + + + +
Sbjct: 113 ISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNS 172

Query: 60  AITKKLKEGI-SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARK 118
            + +K+   + S+L    Q+LP    +D  A +N   V  P  T+ +++  + G F +  
Sbjct: 173 QVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSEN 232

Query: 119 KASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS 176
             + P +         F +   +M+ + L +   N+A  +Y +A  ++ T+  D +P +S
Sbjct: 233 HHNPPPFAPP---VMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKES 289

Query: 177 --LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADL-IIDVLES 233
              L T  +   +P++ +K+PN  + +++S S+PP + V    +      D+    VL +
Sbjct: 290 KFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPN 349

Query: 234 GEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVI 293
             +  +  I +   GS  V    N L G +KL+   + L  S IG   + L+Q ++  ++
Sbjct: 350 SALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIV 409

Query: 294 QTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAY 339
             + +P VN  L +GFPLP      + +  +    + +   +DV Y
Sbjct: 410 PILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVY 455
>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens} Length = 476 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
1ewf_A456 BPI, bactericidal/permeability-increasing protein; 100.0
2obd_A476 Cholesteryl ester transfer protein; lipid transfer 100.0
3uv1_A196 DER F 7 allergen; super-roll; 2.00A {Dermatophagoi 97.12
3h4z_A568 Maltose-binding periplasmic protein fused with Al 93.86
3e8t_A220 Takeout 1, takeout-like protein 1; transport prote 81.13
>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A* Back     alignment and structure
Probab=100.00  E-value=2e-65  Score=509.06  Aligned_cols=332  Identities=22%  Similarity=0.399  Sum_probs=311.2

Q ss_pred             eEEEee-CC-CCcEEEEeeeceeeeccEEEEEcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCc
Q 018385            5 LTLGLE-TQ-KGTLKLSLVDCGCYVKDISIKLDGG-ASWLYQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLP   80 (357)
Q Consensus         5 ~~~~l~-~~-~G~p~v~~~~C~~~i~~~~v~~~gg-~s~l~n~f~~~~~~~i~~~l~~~ic~~i~~~i-~~ln~~L~~lp   80 (357)
                      .++.+. |. +|+|+++..+|++++++++++++|+ ++|++|.|.+.+++.|++.+++++|+.|.+.+ +++|+.|+++|
T Consensus       115 ~~~~l~~~~~~G~~~v~~~~C~~~~~~~~i~~~g~~~~~l~n~f~~~i~~~i~~~l~~~iC~~i~~~v~~~ln~~L~~lp  194 (456)
T 1ewf_A          115 ADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLP  194 (456)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEECCEEEEECSCGGGHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSC
T ss_pred             EEEEEeecCCCCceEEEEecCceEeceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            334444 66 9999999999999999999999999 99999999999999999999999999999977 67999999999


Q ss_pred             ccccccceEEEEEeecCCCeeecceeeeeeeeEEEcCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEechhHHHHHHHHHH
Q 018385           81 KEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYY  160 (357)
Q Consensus        81 ~~~~~~~~~~ldysl~~~P~it~~~i~~~l~G~~~~~~~~~~~p~~~~~~p~~~~~~~~~~M~~i~lS~y~~NS~l~~~~  160 (357)
                      +..++|+.+.+||+++++|.+|+++|+++++|+|++.++...+   |+.|++...+++.++|+++++|||++||++++||
T Consensus       195 ~~~~id~~~~idysl~~~P~it~~~i~~~l~G~~~~~~~~~~~---p~~p~~~~~p~~~~~m~~~~ls~~~~nS~l~~~~  271 (456)
T 1ewf_A          195 VMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNPP---PFAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQ  271 (456)
T ss_dssp             SEEECSSSCEEECCBSSCCEECSSEEEEEECCEEECSSCCCCC---SSCCCCCCCCCCCSSSEEEEEEHHHHHHHHHHHH
T ss_pred             ceeecCceEEEEEEeecCCcccccEEEEEEEEEEEeCCCCCCC---CCCCCCcCCCCCCCcEEEEEecHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887666   4444333345566899999999999999999999


Q ss_pred             hcCcceEEe--ccCCCCC--CcchhhHhhhcHHHHhhCCCCceEEEEeeCCCCeEEEEeCcEEEEEEEEEEEEEe-CCCc
Q 018385          161 DAEFMQWTV--DKVPDQS--LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVL-ESGE  235 (357)
Q Consensus       161 ~~g~l~~~v--~~iP~~~--~L~Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~v~~~~~v~~~v~-~~~~  235 (357)
                      ++|.|++++  +++|+.+  +|||+|+|.++|+++++|||+++.+++++.+||.++++++++++.+.+.+++++. ++++
T Consensus       272 ~~g~l~~~it~~~ip~~~~~~L~T~~~~~~iP~l~~~yP~~~l~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~~~~~~~~  351 (456)
T 1ewf_A          272 EAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSA  351 (456)
T ss_dssp             HTTCSEEEEEGGGSCTTCSCCSBHHHHHTTSSSHHHHSTTCBEEEEEECSSCCEEEEETTEEEEECEEEEEEEEECTTSC
T ss_pred             hCCcceEEechhhCCCcCCCeeeehhhhhhchHHHHhCCCCeEEEEEEeCCCCEEEEecCCEEEEEEEEEEEEEECCCCc
Confidence            999999998  6899865  8999999999999999999999999999999999999999999999999999874 6778


Q ss_pred             eeeEEEEEEEEEEEEEEEEEccEEEEEEEeceEEEEEeeecCCccccccHHHHHHHHHHHhhHHHHHhhccCCccCCCCC
Q 018385          236 VIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIH  315 (357)
Q Consensus       236 ~~~~~~l~~~~~~~~~~~v~~~~l~~~~~~~~~~l~l~~S~iG~~~~~~L~~~i~~~l~~~~~P~lN~~L~~G~pLP~~~  315 (357)
                      ..++|++++++++++++++.++++.|+++++++++++++|++|.++++.|+.+++.+++.+++|.+|++|++|||||.++
T Consensus       352 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~l~~~~l~l~~S~iG~~~~~~l~~~l~~~l~~~~~P~~N~~L~~G~pLP~~~  431 (456)
T 1ewf_A          352 LASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPA  431 (456)
T ss_dssp             EEEEEEEEEECCEEEEEEECSSEEEEEEEECCCEEEEEEESSCCCCGGGGHHHHHHHHHHHTHHHHHHHHHHCEECCCCT
T ss_pred             eeeEEEEEEEEEEEEEEEEECCEEEEEEEecceEEEEEecccCCcCHHHHHHHHHHHHHHhhHHHHHHHHcCCeecCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEeeeEEEEEcCEEEEEeeeeE
Q 018385          316 GFTVKSAEIICSSSKITVCSDVAY  339 (357)
Q Consensus       316 ~~~l~n~~i~~~~~~l~i~~D~~~  339 (357)
                      ++++.|+++.+++||+++++|++|
T Consensus       432 ~~~~~n~~i~~~~~~l~i~~d~~~  455 (456)
T 1ewf_A          432 RVQLYNVVLQPHQNFLLFGADVVY  455 (456)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ceEEEccEEEEECCEEEEEeccee
Confidence            999999999999999999999998
>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens} Back     alignment and structure
>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae} Back     alignment and structure
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} Back     alignment and structure
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 357
d1ewfa2239 d.83.1.1 (A:218-456) Bactericidal permeability-inc 5e-62
d1ewfa1217 d.83.1.1 (A:1-217) Bactericidal permeability-incre 1e-21
>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 239 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  196 bits (500), Expect = 5e-62
 Identities = 55/240 (22%), Positives = 111/240 (46%), Gaps = 8/240 (3%)

Query: 105 SIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEF 164
           +++  + G F +    + P +         F +   +M+ + L +   N+A  +Y +A  
Sbjct: 2   TLDVQMKGEFYSENHHNPPPF---APPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGV 58

Query: 165 MQWTV--DKVPDQS--LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDA 220
           ++ T+  D +P +S   L T  +   +P++ +K+PN  + +++S S+PP + V    +  
Sbjct: 59  LKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTF 118

Query: 221 TVHADL-IIDVLESGEVIPVACISLVIHGSCSVKILRNNLGGSVKLNGFTMSLTWSKIGK 279
               D+    VL +  +  +  I +   GS  V    N L G +KL+   + L  S IG 
Sbjct: 119 YPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGP 178

Query: 280 LRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVAY 339
             + L+Q ++  ++  + +P VN  L +GFPLP      + +  +    + +   +DV Y
Sbjct: 179 FPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVY 238
>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 217 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
d1ewfa2239 Bactericidal permeability-increasing protein, BPI 100.0
d1ewfa1217 Bactericidal permeability-increasing protein, BPI 99.84
>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-51  Score=368.67  Aligned_cols=234  Identities=23%  Similarity=0.394  Sum_probs=220.1

Q ss_pred             ceeeeeeeeEEEcCCCCCCCCCCCCCCCCCCCCCCCCCeEEEEechhHHHHHHHHHHhcCcceEEe--ccCCCCC--Ccc
Q 018385          104 SSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLN  179 (357)
Q Consensus       104 ~~i~~~l~G~~~~~~~~~~~p~~~~~~p~~~~~~~~~~M~~i~lS~y~~NS~l~~~~~~g~l~~~v--~~iP~~~--~L~  179 (357)
                      +++++++||+||+.+++..+   |+.+++...++++++|+++|+|||++||++|+||++|.|++++  +++|+.+  .||
T Consensus         1 ~sl~~~~kG~f~~~~~~~~~---pf~~~~~~~p~~~~~M~~~~isey~~nS~~~~~~~ag~l~~~it~~~ip~~~~~~l~   77 (239)
T d1ewfa2           1 ETLDVQMKGEFYSENHHNPP---PFAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLT   77 (239)
T ss_dssp             SEEEEEECCEEECSSCCCCC---SSCCCCCCCCCCCSSSEEEEEEHHHHHHHHHHHHHTTCSEEEEEGGGSCTTCSCCSB
T ss_pred             CccccceeEEEEeCCCCCCC---CCCCCCcCCCCCCCcEEEEEEcHHHHHHHHHHHHHCCCeEEEEChhhccccccCccc
Confidence            57999999999999998877   5555444456667899999999999999999999999999999  6899986  799


Q ss_pred             hhhHhhhcHHHHhhCCCCceEEEEeeCCCCeEEEEeCcEEEEEEEEEEEEE-eCCCceeeEEEEEEEEEEEEEEEEEccE
Q 018385          180 TAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDV-LESGEVIPVACISLVIHGSCSVKILRNN  258 (357)
Q Consensus       180 Ts~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~v~~~~~v~~~v-~~~~~~~~~~~l~~~~~~~~~~~v~~~~  258 (357)
                      |+|+|.++|+++++|||+++.+++++++||.++++++++++.+.+.+++++ .++++..+++++++++++++++++.+++
T Consensus        78 T~~~~~liP~l~~~ypn~~l~l~i~~~~~P~v~i~~~~~~v~~~~~v~~~~~~~~~~~~~l~~l~~~~~~~~~~~v~~~k  157 (239)
T d1ewfa2          78 TKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNR  157 (239)
T ss_dssp             HHHHHTTSSSHHHHSTTCBEEEEEECSSCCEEEEETTEEEEECEEEEEEEEECTTSCEEEEEEEEEECCEEEEEEECSSE
T ss_pred             HHHHHHHhHHHHHHCCCCcEEEEEEeCCCCEEEEecCcEEEEEEEEEEEEEeCCCCceeEEEEEEEEEEEEEEEEEeCCE
Confidence            999999999999999999999999999999999999999999999999975 6677889999999999999999999999


Q ss_pred             EEEEEEeceEEEEEeeecCCccccccHHHHHHHHHHHhhHHHHHhhccCCccCCCCCCeeEeeeEEEEEcCEEEEEeeee
Q 018385          259 LGGSVKLNGFTMSLTWSKIGKLRLYLIQPVVWAVIQTVFVPYVNSHLGQGFPLPIIHGFTVKSAEIICSSSKITVCSDVA  338 (357)
Q Consensus       259 l~~~~~~~~~~l~l~~S~iG~~~~~~L~~~i~~~l~~~~~P~lN~~L~~G~pLP~~~~~~l~n~~i~~~~~~l~i~~D~~  338 (357)
                      +++++++.++++++.+|.+|.++++.|+.+++.+++.+++|.+|++|++|+|||.+++++++|+++.+++|||.+++|++
T Consensus       158 l~~~l~l~~~~l~l~~S~vG~~~~~~l~~~l~~~l~~~~lP~lN~~L~~GipLP~~~~~~~~n~~i~~~~~~l~i~~D~~  237 (239)
T d1ewfa2         158 LVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVV  237 (239)
T ss_dssp             EEEEEEECCCEEEEEEESSCCCCGGGGHHHHHHHHHHHTHHHHHHHHHHCEECCCCTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEecceEEEEeecccCcccHHHHHHHHHHHHHHhhHHHHHHHhcCCeeCCCCCceeEECCEEEEECCEEEEEeccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ec
Q 018385          339 YA  340 (357)
Q Consensus       339 ~~  340 (357)
                      |+
T Consensus       238 ~~  239 (239)
T d1ewfa2         238 YK  239 (239)
T ss_dssp             EC
T ss_pred             eC
Confidence            85
>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure