Citrus Sinensis ID: 018402


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MSGIYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYPTDTLLVGQSLRVGRVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILYYTFPISYNGLKSLTLKSSPGKMHELTLVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEEERFTLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTSVSRCWIAFDLKTLTKEPDSPIVGFIKVSNK
ccccccccEEEEEEcccccccccEEEEEEEcccccccEEEEcccccccccccEEEEcccccEEEEccccccccEEEEcccccccccccccccccccEEEEEEcccccccccccEEEEEEccccEEEEEcccccccEEEEcccccccccEEEEccccccEEEEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEcccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEcccccccccccEEEccccccHHHHHHHHHHccccEEEEEcccccEEEEccccccEEEccccccEEEEEEccc
cccccccEEEEEEEccccccccccEEEEEEEEccccEEEEEEcccccccccHHHHHcccccEEEEEcccccccEEEEEcccccccccccccccccccHEEEccccccccccccEEEEEccccccEEEEEccccEEEEEEccccccccEEEccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEEccccEEEEEEEEEEEEEccccccEEEEEEccccccccccccccccHHHcccccEEcccccccccccccccccccccEEccEccccccccEEEEEcccccccccEEEEcccccccHHHHHHHHHHccccEEEEEcccccEEEEEccHHHHHHHccccccEEEEEEcc
msgiyndpfqlgfynttpNAFTLALRLgikkqepvFRWVWeanrgkpvrenavfslgadgnlvlaeadgtvgnfiwqsfdyptdtllvgqslrvgRVTKLVSRLSvkenvdgphsfvmepKRLAFYyksssaprpilyytfpisynglksltlksspgkmheltlvdssgdngfifdrpkydstiSFLRLGIDGNLRVFTYsqevdwlpeeerftlfgkdfrgsnarnwdsecqmpercgklgvcednqcvacptekgligwsnkcepaqanfcgtkhfhyykLESVRHYMCTYnfydgigditiedcgkrcssncrcvgyfydtsvsrcWIAFdlktltkepdspivgfikvsnk
msgiyndpfqlgFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYPTDTLLVGQSLRVGRVTKLVsrlsvkenvdgphsfvmepKRLAFYYKSSSAPRPILYYTFPISYNGLKSLTLKSSPGKMHELTLVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEEERFTLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTSVSRCWIAFDLktltkepdspivgfikvsnk
MSGIYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYPTDTLLVGQSLRVGRVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILYYTFPISYNGLKSLTLKSSPGKMHELTLVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEEERFTLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTSVSRCWIAFDLKTLTKEPDSPIVGFIKVSNK
***IYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYPTDTLLVGQSLRVGRVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILYYTFPISYNGLKSLTLK*******ELTLVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEEERFTLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTSVSRCWIAFDLKTLTKEPDSPIVGFI*****
**GIYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYPTDTLLVGQSLRVGRVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILYYTFPISYNGLKSLTLKSSPGKMHELTLVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEEERFTLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTSVSRCWIAFDLKTLTKEPDSPIVGFIKVSN*
MSGIYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYPTDTLLVGQSLRVGRVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILYYTFPISYNGLKSLTLKSSPGKMHELTLVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEEERFTLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTSVSRCWIAFDLKTLTKEPDSPIVGFIKVSNK
***IYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYPTDTLLVGQSLRVGRVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILYYTFPISYNGLKSLTLKSSPGKMHELTLVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEEERFTLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTSVSRCWIAFDLKTLTKEPDSPIVGFIKVSNK
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MSGIYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYPTDTLLVGQSLRVGRVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILYYTFPISYNGLKSLTLKSSPGKMHELTLVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEEERFTLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTSVSRCWIAFDLKTLTKEPDSPIVGFIKVSNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query356 2.2.26 [Sep-21-2011]
Q39688389 Epidermis-specific secret N/A no 0.786 0.719 0.464 8e-74
O65238 872 G-type lectin S-receptor- no no 0.800 0.326 0.238 1e-14
Q9FLV4 872 G-type lectin S-receptor- no no 0.898 0.366 0.238 1e-11
O81833 815 G-type lectin S-receptor- no no 0.786 0.343 0.230 2e-10
O81832 783 G-type lectin S-receptor- no no 0.705 0.320 0.238 6e-10
P17840435 S-locus-specific glycopro N/A no 0.797 0.652 0.239 7e-10
P17841434 S-locus-specific glycopro N/A no 0.727 0.596 0.26 1e-09
P22553435 S-locus-specific glycopro N/A no 0.733 0.6 0.253 1e-09
P22552444 S-locus-specific glycopro N/A no 0.721 0.578 0.228 3e-08
Q8RWZ5 821 G-type lectin S-receptor- no no 0.882 0.382 0.246 3e-08
>sp|Q39688|EP1G_DAUCA Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  277 bits (709), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 152/327 (46%), Positives = 203/327 (62%), Gaps = 47/327 (14%)

Query: 5   YNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVL 64
           +  PFQL FYN TP AFTLALR+G+++ E + RWVWEANRG PV ENA  + G DGNLVL
Sbjct: 57  FTSPFQLCFYNQTPTAFTLALRMGLRRTESLMRWVWEANRGNPVDENATLTFGPDGNLVL 116

Query: 65  AEADGTV----------------------------GNFIWQSFDYPTDTLLVGQSLRVGR 96
           A ++G V                            G F+WQSFD PTDTLLVGQSL++G 
Sbjct: 117 ARSNGQVAWQTSTANKGVVGLKILPNGNMVLYDSKGKFLWQSFDTPTDTLLVGQSLKMGA 176

Query: 97  VTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILYYTFPI-----SYNGLKSL 151
           VTKLVSR S  ENV+GP+S VMEPK L  YYK +++P+PI YY+F +         L+++
Sbjct: 177 VTKLVSRASPGENVNGPYSLVMEPKGLHLYYKPTTSPKPIRYYSFSLFTKLNKNESLQNV 236

Query: 152 TL----KSSPGKMHELTL---VDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQE 204
           T     ++  G    L+L     +S     I +R KY++T+SFLRL IDGN++++TY+ +
Sbjct: 237 TFEFENENDQGFAFLLSLKYGTSNSLGGASILNRIKYNTTLSFLRLEIDGNVKIYTYNDK 296

Query: 205 VDWLPEEERFTLFGKD----FRGSNA--RNWDSECQMPERCGKLGVCEDNQCVACPTEKG 258
           VD+   E  +TLF K     F+ S A   +  SECQ+P++CG  G+CE++QCV CPT  G
Sbjct: 297 VDYGAWEVTYTLFLKAPPPLFQVSLAATESESSECQLPKKCGNFGLCEESQCVGCPTSSG 356

Query: 259 -LIGWSNKCEPAQANFCGTKHFHYYKL 284
            ++ WS  CEP + + CG K FHY KL
Sbjct: 357 PVLAWSKTCEPPKLSSCGPKDFHYNKL 383




May be involved in the limitation of water flow through the outer epidermal cell wall, either by direct modification of wall structure or as a signal instructing the protoplast to restrict water transport across the cell wall.
Daucus carota (taxid: 4039)
>sp|O65238|Y5537_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2 Back     alignment and function description
>sp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1 Back     alignment and function description
>sp|O81833|SD11_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana GN=SD11 PE=1 SV=1 Back     alignment and function description
>sp|O81832|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4 Back     alignment and function description
>sp|P17840|SLSG3_BRAOL S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|P17841|SLSG4_BRAOL S-locus-specific glycoprotein S14 (Fragment) OS=Brassica oleracea GN=SLSG PE=2 SV=1 Back     alignment and function description
>sp|P22553|SLSG2_BRAOA S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1 Back     alignment and function description
>sp|P22552|SLSG1_BRAOA S-locus-specific glycoprotein BS29-1 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1 Back     alignment and function description
>sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
224114796428 predicted protein [Populus trichocarpa] 0.969 0.806 0.535 1e-111
449483158440 PREDICTED: epidermis-specific secreted g 0.974 0.788 0.536 1e-111
224114792428 predicted protein [Populus trichocarpa] 0.960 0.799 0.539 1e-110
449438929440 PREDICTED: epidermis-specific secreted g 0.971 0.786 0.533 1e-110
449483155440 PREDICTED: epidermis-specific secreted g 0.971 0.786 0.520 1e-109
356549665435 PREDICTED: epidermis-specific secreted g 0.971 0.795 0.511 1e-105
224117046426 predicted protein [Populus trichocarpa] 0.966 0.807 0.516 1e-105
359493788429 PREDICTED: epidermis-specific secreted g 0.952 0.790 0.519 1e-104
224117048426 predicted protein [Populus trichocarpa] 0.966 0.807 0.516 1e-104
383932356440 epidermis-specific secreted glycoprotein 0.963 0.779 0.511 1e-104
>gi|224114796|ref|XP_002316859.1| predicted protein [Populus trichocarpa] gi|222859924|gb|EEE97471.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/385 (53%), Positives = 257/385 (66%), Gaps = 40/385 (10%)

Query: 4   IYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLV 63
           I   PFQL FYNTTPNA+TLALR+G  + E   RWVWEANRG PVRENA  +LG DGNLV
Sbjct: 52  IGTSPFQLIFYNTTPNAYTLALRMGTVRSESTMRWVWEANRGNPVRENATLTLGGDGNLV 111

Query: 64  LAEADGTV----------------------------GNFIWQSFDYPTDTLLVGQSLRVG 95
           LA+ADG V                            GNFIWQSFD PTDTLLVGQSLRVG
Sbjct: 112 LADADGRVAWQTNTANKGVVGLQLLSNGNMVLHDSKGNFIWQSFDSPTDTLLVGQSLRVG 171

Query: 96  RVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILYYTFPISYNG-LKSLTLK 154
            VT+LVSR S   N DG +S VMEPKRLA YYKS ++P+P +YY F   YNG L++ TL 
Sbjct: 172 GVTRLVSRASETHNSDGAYSLVMEPKRLAMYYKSPNSPKPYIYYDFDSVYNGRLQNATLN 231

Query: 155 SSPGKMHELT---LVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEE 211
            +P    +L     +D S  N     RPKY+ST+SFLR+GIDG+L+++TY+ +VD+   E
Sbjct: 232 CAPNGYDDLANDLTLDLSTGNAMTLARPKYNSTLSFLRIGIDGSLKMYTYNNKVDYQAWE 291

Query: 212 ERFTLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKCEPAQA 271
           E +TLF +D         + ECQ+PERCGK G+CED+QCVACP   GL+GWS  CEP + 
Sbjct: 292 ETYTLFSRDGFP------EGECQLPERCGKFGLCEDSQCVACPLPSGLMGWSKYCEPVKP 345

Query: 272 NFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTSVSRCW 331
             CG+K+F+YYKLE V H M  Y    G G +  +DCGK+CSS+C+C+GYFY+  +S+CW
Sbjct: 346 PACGSKNFYYYKLEGVDHSMSKYG--SGSGAMKEDDCGKKCSSDCKCLGYFYNKEISKCW 403

Query: 332 IAFDLKTLTKEPDSPIVGFIKVSNK 356
           IA+DL+TLTK  +S  VG+IK   +
Sbjct: 404 IAYDLQTLTKVANSTHVGYIKAPKQ 428




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483158|ref|XP_004156509.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224114792|ref|XP_002316858.1| predicted protein [Populus trichocarpa] gi|222859923|gb|EEE97470.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449438929|ref|XP_004137240.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449483155|ref|XP_004156508.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356549665|ref|XP_003543212.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Glycine max] Back     alignment and taxonomy information
>gi|224117046|ref|XP_002317461.1| predicted protein [Populus trichocarpa] gi|222860526|gb|EEE98073.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493788|ref|XP_002285446.2| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224117048|ref|XP_002317462.1| predicted protein [Populus trichocarpa] gi|222860527|gb|EEE98074.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|383932356|gb|AFH57275.1| epidermis-specific secreted glycoprotein EP1-like protein [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
TAIR|locus:2037508441 AT1G78850 [Arabidopsis thalian 0.853 0.689 0.395 1.9e-60
TAIR|locus:2037568443 AT1G78860 [Arabidopsis thalian 0.851 0.683 0.4 3.5e-59
UNIPROTKB|Q39688389 EP1 "Epidermis-specific secret 0.443 0.406 0.473 3.8e-56
TAIR|locus:4010713447423 AT1G16905 [Arabidopsis thalian 0.839 0.706 0.398 1.3e-52
TAIR|locus:2037548455 AT1G78830 [Arabidopsis thalian 0.839 0.657 0.363 5.4e-47
TAIR|locus:2037563455 AT1G78820 [Arabidopsis thalian 0.839 0.657 0.357 8.8e-47
TAIR|locus:2131684 783 AT4G27290 [Arabidopsis thalian 0.691 0.314 0.256 2.4e-10
TAIR|locus:2088619439 AT3G12000 [Arabidopsis thalian 0.744 0.603 0.248 2.5e-10
TAIR|locus:2018506 847 RK2 "receptor kinase 2" [Arabi 0.786 0.330 0.253 1.4e-08
TAIR|locus:2141181 850 RK3 "receptor kinase 3" [Arabi 0.780 0.327 0.254 1.5e-08
TAIR|locus:2037508 AT1G78850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 130/329 (39%), Positives = 191/329 (58%)

Query:    37 RWVWEANRGKPVRENAV-FSLGADGNLVLAEADGTVGNFIWQSFDYPTDTLLVGQSLRVG 95
             R VW+ N      + AV   +  +GN+V+ ++ G    F+WQSFD PTDTLLVGQSL++ 
Sbjct:   121 RLVWQTNTAN---KGAVGIKILENGNMVIYDSSG---KFVWQSFDSPTDTLLVGQSLKLN 174

Query:    96 RVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILY--YTFPISYNGLKSLTL 153
               TKLVSRLS   N +GP+S VME K+L  YY ++  P+PI Y  Y F       +S+T 
Sbjct:   175 GRTKLVSRLSPSVNTNGPYSLVMEAKKLVLYYTTNKTPKPIAYFEYEFFTKITQFQSMTF 234

Query:   154 KSSPGKMHELTLVDSSGDNGFIFD------RPKYDSTISFLRLGIDGNLRVFTYSQEVDW 207
             ++         LV    D+G  F+      RPK+++T+SF+RL  DGN+RV++YS     
Sbjct:   235 QAVEDSDTTWGLVMEGVDSGSKFNVSTFLSRPKHNATLSFIRLESDGNIRVWSYSTLATS 294

Query:   208 LPEEERFTLFGKDFRGSNA-RNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKC 266
                +  +T F      +NA  + + EC++PE C   G+C+  QC ACP++KGL+GW   C
Sbjct:   295 TAWDVTYTAF------TNADTDGNDECRIPEHCLGFGLCKKGQCNACPSDKGLLGWDETC 348

Query:   267 EPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTS 326
             +      C  K FHY+K+E    +M  YN   G    T   CG +C+ +C+C+G+FY+  
Sbjct:   349 KSPSLASCDPKTFHYFKIEGADSFMTKYN---GGSSTTESACGDKCTRDCKCLGFFYNRK 405

Query:   327 VSRCWIAFDLKTLTKEPDSPIVGFIKVSN 355
              SRCW+ ++LKTLT+  DS +V ++K  N
Sbjct:   406 SSRCWLGYELKTLTRTGDSSLVAYVKAPN 434


GO:0005886 "plasma membrane" evidence=ISM
GO:0030246 "carbohydrate binding" evidence=IEA;ISS
GO:0005618 "cell wall" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2037568 AT1G78860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q39688 EP1 "Epidermis-specific secreted glycoprotein EP1" [Daucus carota (taxid:4039)] Back     alignment and assigned GO terms
TAIR|locus:4010713447 AT1G16905 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037548 AT1G78830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037563 AT1G78820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131684 AT4G27290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088619 AT3G12000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018506 RK2 "receptor kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_XI000890
hypothetical protein (428 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
pfam01453109 pfam01453, B_lectin, D-mannose binding lectin 9e-16
smart00108114 smart00108, B_lectin, Bulb-type mannose-specific l 6e-14
cd00028116 cd00028, B_lectin, Bulb-type mannose-specific lect 9e-14
cd0109884 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain 5e-09
pfam0827666 pfam08276, PAN_2, PAN-like domain 5e-04
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin Back     alignment and domain information
 Score = 72.0 bits (177), Expect = 9e-16
 Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 33/101 (32%)

Query: 38  WVWEANRGKPVRE-NAVFSLGADGNLVLAEADGTV--------------------GNF-- 74
            VW ANR  P+ + +    L +DGNLVL + +G V                    GN   
Sbjct: 4   VVWVANRLNPLTDSSYTLILQSDGNLVLYDGNGRVVWSSNTSGKGSGCVAVLQDDGNLVL 63

Query: 75  -------IWQSFDYPTDTLLVGQSLR---VGRVTKLVSRLS 105
                  +WQSFD+PTDTLL GQ      +G   +L S  S
Sbjct: 64  YDNSGKVLWQSFDHPTDTLLPGQKDGNVVIGGSRRLTSWKS 104


These proteins include mannose-specific lectins from plants as well as bacteriocins from bacteria. Length = 109

>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|238531 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>gnl|CDD|219774 pfam08276, PAN_2, PAN-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 356
PF00954110 S_locus_glycop: S-locus glycoprotein family; Inter 99.82
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 99.8
PF0827666 PAN_2: PAN-like domain; InterPro: IPR013227 PAN do 99.6
cd0109884 PAN_AP_plant Plant PAN/APPLE-like domain; present 99.59
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 99.57
smart00108114 B_lectin Bulb-type mannose-specific lectin. 99.5
cd0012980 PAN_APPLE PAN/APPLE-like domain; present in N-term 99.43
smart0047378 PAN_AP divergent subfamily of APPLE domains. Apple 98.59
cd0110073 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d 97.82
PF0002479 PAN_1: PAN domain This Prosite entry concerns appl 94.14
smart0022379 APPLE APPLE domain. Four-fold repeat in plasma kal 92.83
PF1429551 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A. 91.88
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 91.53
smart00108114 B_lectin Bulb-type mannose-specific lectin. 91.03
smart0060594 CW CW domain. 90.43
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 90.3
PF0827771 PAN_3: PAN-like domain; InterPro: IPR006583 PAN do 90.18
cd0109980 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; pr 85.37
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation Back     alignment and domain information
Probab=99.82  E-value=4.9e-20  Score=150.31  Aligned_cols=104  Identities=16%  Similarity=0.267  Sum_probs=82.3

Q ss_pred             EeCCCCCCCcceEEEecCCCCc--ceEEEEEeCCCC--ceEEecCCCCceEEEEEEccCCcEEEEEeecCCCCCCceEEE
Q 018402          139 YTFPISYNGLKSLTLKSSPGKM--HELTLVDSSGDN--GFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEEERF  214 (356)
Q Consensus       139 W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~Ld~dG~l~~~~~~~~~~~~~W~~~~  214 (356)
                      ||+|    +|++..|++.|++.  ..+.+.|+.++.  ++.+ ...+.+.++|++||++|+|+++.|.+.  .+.|.+.|
T Consensus         1 wrsG----~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~-~~~~~s~~~r~~ld~~G~l~~~~w~~~--~~~W~~~~   73 (110)
T PF00954_consen    1 WRSG----PWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTY-SLSNSSVLSRLVLDSDGQLQRYIWNES--TQSWSVFW   73 (110)
T ss_pred             CCcc----ccCCeEECCcccccccceeEEEEEECCCeEEEEE-ecCCCceEEEEEEeeeeEEEEEEEecC--CCcEEEEE
Confidence            6664    89999999999872  334444444333  3344 344567789999999999999999874  68899999


Q ss_pred             EecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCCCC
Q 018402          215 TLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIG  261 (356)
Q Consensus       215 ~~~~~~~~~~~~~~p~~~C~~~~~CG~~g~C~~~~~~~C~C~~g~~~  261 (356)
                      .            +|.|+||+|+.||+||+|+.++.+.|.|++||..
T Consensus        74 ~------------~p~d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P  108 (110)
T PF00954_consen   74 S------------APKDQCDVYGFCGPNGICNSNNSPKCSCLPGFEP  108 (110)
T ss_pred             E------------ecccCCCCccccCCccEeCCCCCCceECCCCcCC
Confidence            6            4789999999999999999888889999999963



This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen

>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins Back     alignment and domain information
>smart00473 PAN_AP divergent subfamily of APPLE domains Back     alignment and domain information
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins Back     alignment and domain information
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>smart00223 APPLE APPLE domain Back     alignment and domain information
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00605 CW CW domain Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 99.95
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 99.9
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.51
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.36
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.36
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.32
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 98.95
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 98.58
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 98.36
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 98.24
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 98.14
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 98.12
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 98.08
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 97.99
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 97.94
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 97.89
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 97.87
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 97.62
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 97.6
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 97.45
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 97.15
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 97.01
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 96.81
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 96.78
2ll3_A82 Micronemal protein 4; cell adhesion; NMR {Toxoplas 94.21
4a5v_A161 MIC4, micronemal protein 4; adhesion; NMR {Toxopla 80.66
3hms_A101 Hepatocyte growth factor; HGF/SF, hormone/growth f 80.24
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
Probab=99.95  E-value=8.5e-28  Score=225.11  Aligned_cols=168  Identities=17%  Similarity=0.219  Sum_probs=115.2

Q ss_pred             CCCcEEEEeecCCCCCeEEEEEEceeCCCCceeEEEEecCCCCcCC-----CceEEEccCccEEE--EcCCCCc------
Q 018402            5 YNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRE-----NAVFSLGADGNLVL--AEADGTV------   71 (356)
Q Consensus         5 ~~g~F~lGFf~~~~~~~~l~Iw~~~~~~~~~~t~VWvANr~~Pv~~-----~~~l~l~~~GnLvL--~d~~~~~------   71 (356)
                      .+|.|+||||+.  ++.||   |+     +.+ +||+|||++||.+     +++|+|+.+|+|||  .|+++.+      
T Consensus        32 ~~g~F~lgf~~~--~~~~l---y~-----~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~~G~Lvl~~~~~~~~~vWst~~  100 (276)
T 3m7h_A           32 PNQRFKLLLQGD--GNLVI---QD-----NGA-TVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSRRRVWLTDN  100 (276)
T ss_dssp             TTSSEEEEECTT--SCEEE---EE-----TTE-EEEECSTTSTTEEEEECCCTTCCSEEEESSSEEEEEGGGTEEEEECC
T ss_pred             CCCcEEEEEECC--CCeEE---EC-----CCC-eEEECCCCCCcCCcccccceEEEEeCCCcEEEEEeCCCCCEEEEeCC
Confidence            689999999943  35565   55     345 9999999999976     67899999999999  6643211      


Q ss_pred             --------------------------ceEEeeeccCCCCccccCce----eecCCeEEEEecCCCCCCCCcceEEEEecC
Q 018402           72 --------------------------GNFIWQSFDYPTDTLLVGQS----LRVGRVTKLVSRLSVKENVDGPHSFVMEPK  121 (356)
Q Consensus        72 --------------------------~~~lWQSFD~PTDTlLPgqk----L~~g~~~~L~Sw~s~~dps~G~fsl~l~~~  121 (356)
                                                +.+||||  |||||||||||    |..|  ++|   ++.+||++|.|+|+|+++
T Consensus       101 ~~~~~~~~~~~~~a~L~d~GNlVl~~~~~lWqS--~ptdtlLpg~~~~~~l~~g--~~L---~S~~dps~G~fsl~l~~d  173 (276)
T 3m7h_A          101 STFTSNDQWNRTHLVLQDDGNIVLVDSLALWNG--TPAIPLVPGAIDSLLLAPG--SEL---VQGVVYGAGASKLVFQGD  173 (276)
T ss_dssp             CCCCCTTHHHHEEEEECTTSCEEEEEEEEEEES--CTTSCCCCSCTTCEEECSS--EEE---CTTCEEEETTEEEEECTT
T ss_pred             CcccccccCCceEEEEeCCCCEEecCCceeeCc--ccccccccccccccccccC--ccc---ccCCCCCCceEEEeecCC
Confidence                                      3589999  99999999999    6555  467   568899999999999988


Q ss_pred             C-cEEEEecCCCCCCeeEEeCCCCCCCcceEEEecCCCCcceEEEEEeCCCCceEEecCCCCceEEEEEEccCCcEEEEE
Q 018402          122 R-LAFYYKSSSAPRPILYYTFPISYNGLKSLTLKSSPGKMHELTLVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFT  200 (356)
Q Consensus       122 ~-~~~~~~~~~~~~~~~YW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ld~dG~l~~~~  200 (356)
                      + +.++  . ++.  ..||++++.......+.+...+    .+.+  .++++.............+|++|+.||+|++|.
T Consensus       174 GnlvLy--~-~~~--~~yW~Sgt~~~~~~~l~l~~dG----nLvl--~d~~~~~vWsS~t~~~~~~rl~Ld~dGnLvly~  242 (276)
T 3m7h_A          174 GNLVAY--G-PNG--AATWNAGTQGKGAVRAVFQGDG----NLVV--YGAGNAVLWHSHTGGHASAVLRLQANGSIAILD  242 (276)
T ss_dssp             SCEEEE--C-TTS--SEEEECCCTTTTCCEEEECTTS----CEEE--ECTTSCEEEECSCTTCTTCEEEECTTSCEEEEE
T ss_pred             ceEEEE--e-CCC--eEEEECCCCCCccEEEEEcCCC----eEEE--EeCCCcEEEEecCCCCCCEEEEEcCCccEEEEc
Confidence            7 3332  2 222  6899998654322233333222    2222  222232222222212224799999999999999


Q ss_pred             e
Q 018402          201 Y  201 (356)
Q Consensus       201 ~  201 (356)
                      |
T Consensus       243 ~  243 (276)
T 3m7h_A          243 E  243 (276)
T ss_dssp             E
T ss_pred             C
Confidence            7



>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M* Back     alignment and structure
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii} Back     alignment and structure
>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 356
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 3e-04
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]
 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 37 RWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDY 81
            VW +N G   ++     L +DGN V+ +A+G     +W S   
Sbjct: 38 TSVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRS---LWASHSV 79


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 98.9
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 98.8
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 98.69
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 98.66
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 98.54
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 98.53
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 98.42
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 98.29
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 98.26
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 98.06
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 97.98
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 97.52
d2qj2a191 Hepatocyte growth factor {Human (Homo sapiens) [Ta 89.05
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]
Probab=98.90  E-value=4.6e-09  Score=82.33  Aligned_cols=90  Identities=21%  Similarity=0.359  Sum_probs=66.0

Q ss_pred             CCCCcEEEEeecCCCCCeEEEEEEceeCCCCceeEEEEecCCCCcCCCceEEEccCccEEEEcCCCCcceEEeeeccCCC
Q 018402            4 IYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYPT   83 (356)
Q Consensus         4 ~~~g~F~lGFf~~~~~~~~l~Iw~~~~~~~~~~t~VWvANr~~Pv~~~~~l~l~~~GnLvL~d~~~~~~~~lWQSFD~PT   83 (356)
                      +.+|.|+|+|...  ++  |.++..       .++||+||++.|+..++.|.|.++|+|||.+++   +.++|+|=    
T Consensus        16 l~~g~~~l~~q~d--gn--Lvl~~~-------~~~vW~ant~~~~~~~~~l~l~~dGnLvl~~~~---g~~vW~s~----   77 (109)
T d1kj1a_          16 LDVEPYHFIMQED--CN--LVLYDH-------STSVWASNTGILGKKGCKAVLQSDGNFVVYDAE---GRSLWASH----   77 (109)
T ss_dssp             EEETTEEEEECTT--SC--EEEEET-------TEEEEECCCCCTTCCCCEEEECTTSCEEEECSS---SCEEEECC----
T ss_pred             EEeCCEEEEecCC--Ce--EEEEeC-------CEEEEEeCCCCCCceeEEEEEcCCceEEEEeCC---CcEEEEEe----
Confidence            4578899999643  22  444432       267999999999988899999999999999987   46799871    


Q ss_pred             CccccCceeecCCeEEEEecCCCCCCCCcceEEEEecCC-cEEEEecCCCCCCeeEEeCC
Q 018402           84 DTLLVGQSLRVGRVTKLVSRLSVKENVDGPHSFVMEPKR-LAFYYKSSSAPRPILYYTFP  142 (356)
Q Consensus        84 DTlLPgqkL~~g~~~~L~Sw~s~~dps~G~fsl~l~~~~-~~~~~~~~~~~~~~~YW~~~  142 (356)
                                             +.-..|.|.+.|+++| +++|     +   ...|.++
T Consensus        78 -----------------------t~~~~~~~~l~L~ddGNlvly-----~---~~~W~S~  106 (109)
T d1kj1a_          78 -----------------------SVRGNGNYVLVLQEDGNVVIY-----G---SDIWSTG  106 (109)
T ss_dssp             -----------------------CCCCSSCCEEEECTTSCEEEE-----C---CEEEECC
T ss_pred             -----------------------eECCCCCEEEEEeCCCcEEEE-----C---CCEecCC
Confidence                                   1113577899998776 6654     1   3578875



>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure