Citrus Sinensis ID: 018402
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 356 | ||||||
| 224114796 | 428 | predicted protein [Populus trichocarpa] | 0.969 | 0.806 | 0.535 | 1e-111 | |
| 449483158 | 440 | PREDICTED: epidermis-specific secreted g | 0.974 | 0.788 | 0.536 | 1e-111 | |
| 224114792 | 428 | predicted protein [Populus trichocarpa] | 0.960 | 0.799 | 0.539 | 1e-110 | |
| 449438929 | 440 | PREDICTED: epidermis-specific secreted g | 0.971 | 0.786 | 0.533 | 1e-110 | |
| 449483155 | 440 | PREDICTED: epidermis-specific secreted g | 0.971 | 0.786 | 0.520 | 1e-109 | |
| 356549665 | 435 | PREDICTED: epidermis-specific secreted g | 0.971 | 0.795 | 0.511 | 1e-105 | |
| 224117046 | 426 | predicted protein [Populus trichocarpa] | 0.966 | 0.807 | 0.516 | 1e-105 | |
| 359493788 | 429 | PREDICTED: epidermis-specific secreted g | 0.952 | 0.790 | 0.519 | 1e-104 | |
| 224117048 | 426 | predicted protein [Populus trichocarpa] | 0.966 | 0.807 | 0.516 | 1e-104 | |
| 383932356 | 440 | epidermis-specific secreted glycoprotein | 0.963 | 0.779 | 0.511 | 1e-104 |
| >gi|224114796|ref|XP_002316859.1| predicted protein [Populus trichocarpa] gi|222859924|gb|EEE97471.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/385 (53%), Positives = 257/385 (66%), Gaps = 40/385 (10%)
Query: 4 IYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLV 63
I PFQL FYNTTPNA+TLALR+G + E RWVWEANRG PVRENA +LG DGNLV
Sbjct: 52 IGTSPFQLIFYNTTPNAYTLALRMGTVRSESTMRWVWEANRGNPVRENATLTLGGDGNLV 111
Query: 64 LAEADGTV----------------------------GNFIWQSFDYPTDTLLVGQSLRVG 95
LA+ADG V GNFIWQSFD PTDTLLVGQSLRVG
Sbjct: 112 LADADGRVAWQTNTANKGVVGLQLLSNGNMVLHDSKGNFIWQSFDSPTDTLLVGQSLRVG 171
Query: 96 RVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILYYTFPISYNG-LKSLTLK 154
VT+LVSR S N DG +S VMEPKRLA YYKS ++P+P +YY F YNG L++ TL
Sbjct: 172 GVTRLVSRASETHNSDGAYSLVMEPKRLAMYYKSPNSPKPYIYYDFDSVYNGRLQNATLN 231
Query: 155 SSPGKMHELT---LVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEE 211
+P +L +D S N RPKY+ST+SFLR+GIDG+L+++TY+ +VD+ E
Sbjct: 232 CAPNGYDDLANDLTLDLSTGNAMTLARPKYNSTLSFLRIGIDGSLKMYTYNNKVDYQAWE 291
Query: 212 ERFTLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKCEPAQA 271
E +TLF +D + ECQ+PERCGK G+CED+QCVACP GL+GWS CEP +
Sbjct: 292 ETYTLFSRDGFP------EGECQLPERCGKFGLCEDSQCVACPLPSGLMGWSKYCEPVKP 345
Query: 272 NFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTSVSRCW 331
CG+K+F+YYKLE V H M Y G G + +DCGK+CSS+C+C+GYFY+ +S+CW
Sbjct: 346 PACGSKNFYYYKLEGVDHSMSKYG--SGSGAMKEDDCGKKCSSDCKCLGYFYNKEISKCW 403
Query: 332 IAFDLKTLTKEPDSPIVGFIKVSNK 356
IA+DL+TLTK +S VG+IK +
Sbjct: 404 IAYDLQTLTKVANSTHVGYIKAPKQ 428
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483158|ref|XP_004156509.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224114792|ref|XP_002316858.1| predicted protein [Populus trichocarpa] gi|222859923|gb|EEE97470.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449438929|ref|XP_004137240.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449483155|ref|XP_004156508.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356549665|ref|XP_003543212.1| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224117046|ref|XP_002317461.1| predicted protein [Populus trichocarpa] gi|222860526|gb|EEE98073.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|359493788|ref|XP_002285446.2| PREDICTED: epidermis-specific secreted glycoprotein EP1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224117048|ref|XP_002317462.1| predicted protein [Populus trichocarpa] gi|222860527|gb|EEE98074.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|383932356|gb|AFH57275.1| epidermis-specific secreted glycoprotein EP1-like protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 356 | ||||||
| TAIR|locus:2037508 | 441 | AT1G78850 [Arabidopsis thalian | 0.853 | 0.689 | 0.395 | 1.9e-60 | |
| TAIR|locus:2037568 | 443 | AT1G78860 [Arabidopsis thalian | 0.851 | 0.683 | 0.4 | 3.5e-59 | |
| UNIPROTKB|Q39688 | 389 | EP1 "Epidermis-specific secret | 0.443 | 0.406 | 0.473 | 3.8e-56 | |
| TAIR|locus:4010713447 | 423 | AT1G16905 [Arabidopsis thalian | 0.839 | 0.706 | 0.398 | 1.3e-52 | |
| TAIR|locus:2037548 | 455 | AT1G78830 [Arabidopsis thalian | 0.839 | 0.657 | 0.363 | 5.4e-47 | |
| TAIR|locus:2037563 | 455 | AT1G78820 [Arabidopsis thalian | 0.839 | 0.657 | 0.357 | 8.8e-47 | |
| TAIR|locus:2131684 | 783 | AT4G27290 [Arabidopsis thalian | 0.691 | 0.314 | 0.256 | 2.4e-10 | |
| TAIR|locus:2088619 | 439 | AT3G12000 [Arabidopsis thalian | 0.744 | 0.603 | 0.248 | 2.5e-10 | |
| TAIR|locus:2018506 | 847 | RK2 "receptor kinase 2" [Arabi | 0.786 | 0.330 | 0.253 | 1.4e-08 | |
| TAIR|locus:2141181 | 850 | RK3 "receptor kinase 3" [Arabi | 0.780 | 0.327 | 0.254 | 1.5e-08 |
| TAIR|locus:2037508 AT1G78850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 130/329 (39%), Positives = 191/329 (58%)
Query: 37 RWVWEANRGKPVRENAV-FSLGADGNLVLAEADGTVGNFIWQSFDYPTDTLLVGQSLRVG 95
R VW+ N + AV + +GN+V+ ++ G F+WQSFD PTDTLLVGQSL++
Sbjct: 121 RLVWQTNTAN---KGAVGIKILENGNMVIYDSSG---KFVWQSFDSPTDTLLVGQSLKLN 174
Query: 96 RVTKLVSRLSVKENVDGPHSFVMEPKRLAFYYKSSSAPRPILY--YTFPISYNGLKSLTL 153
TKLVSRLS N +GP+S VME K+L YY ++ P+PI Y Y F +S+T
Sbjct: 175 GRTKLVSRLSPSVNTNGPYSLVMEAKKLVLYYTTNKTPKPIAYFEYEFFTKITQFQSMTF 234
Query: 154 KSSPGKMHELTLVDSSGDNGFIFD------RPKYDSTISFLRLGIDGNLRVFTYSQEVDW 207
++ LV D+G F+ RPK+++T+SF+RL DGN+RV++YS
Sbjct: 235 QAVEDSDTTWGLVMEGVDSGSKFNVSTFLSRPKHNATLSFIRLESDGNIRVWSYSTLATS 294
Query: 208 LPEEERFTLFGKDFRGSNA-RNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKC 266
+ +T F +NA + + EC++PE C G+C+ QC ACP++KGL+GW C
Sbjct: 295 TAWDVTYTAF------TNADTDGNDECRIPEHCLGFGLCKKGQCNACPSDKGLLGWDETC 348
Query: 267 EPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCSSNCRCVGYFYDTS 326
+ C K FHY+K+E +M YN G T CG +C+ +C+C+G+FY+
Sbjct: 349 KSPSLASCDPKTFHYFKIEGADSFMTKYN---GGSSTTESACGDKCTRDCKCLGFFYNRK 405
Query: 327 VSRCWIAFDLKTLTKEPDSPIVGFIKVSN 355
SRCW+ ++LKTLT+ DS +V ++K N
Sbjct: 406 SSRCWLGYELKTLTRTGDSSLVAYVKAPN 434
|
|
| TAIR|locus:2037568 AT1G78860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q39688 EP1 "Epidermis-specific secreted glycoprotein EP1" [Daucus carota (taxid:4039)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:4010713447 AT1G16905 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037548 AT1G78830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037563 AT1G78820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2131684 AT4G27290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2088619 AT3G12000 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2018506 RK2 "receptor kinase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| fgenesh4_pg.C_LG_XI000890 | hypothetical protein (428 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 356 | |||
| pfam01453 | 109 | pfam01453, B_lectin, D-mannose binding lectin | 9e-16 | |
| smart00108 | 114 | smart00108, B_lectin, Bulb-type mannose-specific l | 6e-14 | |
| cd00028 | 116 | cd00028, B_lectin, Bulb-type mannose-specific lect | 9e-14 | |
| cd01098 | 84 | cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain | 5e-09 | |
| pfam08276 | 66 | pfam08276, PAN_2, PAN-like domain | 5e-04 |
| >gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 9e-16
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 33/101 (32%)
Query: 38 WVWEANRGKPVRE-NAVFSLGADGNLVLAEADGTV--------------------GNF-- 74
VW ANR P+ + + L +DGNLVL + +G V GN
Sbjct: 4 VVWVANRLNPLTDSSYTLILQSDGNLVLYDGNGRVVWSSNTSGKGSGCVAVLQDDGNLVL 63
Query: 75 -------IWQSFDYPTDTLLVGQSLR---VGRVTKLVSRLS 105
+WQSFD+PTDTLL GQ +G +L S S
Sbjct: 64 YDNSGKVLWQSFDHPTDTLLPGQKDGNVVIGGSRRLTSWKS 104
|
These proteins include mannose-specific lectins from plants as well as bacteriocins from bacteria. Length = 109 |
| >gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin | Back alignment and domain information |
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| >gnl|CDD|238531 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins | Back alignment and domain information |
|---|
| >gnl|CDD|219774 pfam08276, PAN_2, PAN-like domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 356 | |||
| PF00954 | 110 | S_locus_glycop: S-locus glycoprotein family; Inter | 99.82 | |
| PF01453 | 114 | B_lectin: D-mannose binding lectin; InterPro: IPR0 | 99.8 | |
| PF08276 | 66 | PAN_2: PAN-like domain; InterPro: IPR013227 PAN do | 99.6 | |
| cd01098 | 84 | PAN_AP_plant Plant PAN/APPLE-like domain; present | 99.59 | |
| cd00028 | 116 | B_lectin Bulb-type mannose-specific lectin. The do | 99.57 | |
| smart00108 | 114 | B_lectin Bulb-type mannose-specific lectin. | 99.5 | |
| cd00129 | 80 | PAN_APPLE PAN/APPLE-like domain; present in N-term | 99.43 | |
| smart00473 | 78 | PAN_AP divergent subfamily of APPLE domains. Apple | 98.59 | |
| cd01100 | 73 | APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d | 97.82 | |
| PF00024 | 79 | PAN_1: PAN domain This Prosite entry concerns appl | 94.14 | |
| smart00223 | 79 | APPLE APPLE domain. Four-fold repeat in plasma kal | 92.83 | |
| PF14295 | 51 | PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A. | 91.88 | |
| PF01453 | 114 | B_lectin: D-mannose binding lectin; InterPro: IPR0 | 91.53 | |
| smart00108 | 114 | B_lectin Bulb-type mannose-specific lectin. | 91.03 | |
| smart00605 | 94 | CW CW domain. | 90.43 | |
| cd00028 | 116 | B_lectin Bulb-type mannose-specific lectin. The do | 90.3 | |
| PF08277 | 71 | PAN_3: PAN-like domain; InterPro: IPR006583 PAN do | 90.18 | |
| cd01099 | 80 | PAN_AP_HGF Subfamily of PAN/APPLE-like domains; pr | 85.37 |
| >PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-20 Score=150.31 Aligned_cols=104 Identities=16% Similarity=0.267 Sum_probs=82.3
Q ss_pred EeCCCCCCCcceEEEecCCCCc--ceEEEEEeCCCC--ceEEecCCCCceEEEEEEccCCcEEEEEeecCCCCCCceEEE
Q 018402 139 YTFPISYNGLKSLTLKSSPGKM--HELTLVDSSGDN--GFIFDRPKYDSTISFLRLGIDGNLRVFTYSQEVDWLPEEERF 214 (356)
Q Consensus 139 W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~Ld~dG~l~~~~~~~~~~~~~W~~~~ 214 (356)
||+| +|++..|++.|++. ..+.+.|+.++. ++.+ ...+.+.++|++||++|+|+++.|.+. .+.|.+.|
T Consensus 1 wrsG----~WnG~~f~g~p~~~~~~~~~~~fv~~~~e~~~t~-~~~~~s~~~r~~ld~~G~l~~~~w~~~--~~~W~~~~ 73 (110)
T PF00954_consen 1 WRSG----PWNGQRFSGIPEMSSNSLYNYSFVSNNEEVYYTY-SLSNSSVLSRLVLDSDGQLQRYIWNES--TQSWSVFW 73 (110)
T ss_pred CCcc----ccCCeEECCcccccccceeEEEEEECCCeEEEEE-ecCCCceEEEEEEeeeeEEEEEEEecC--CCcEEEEE
Confidence 6664 89999999999872 334444444333 3344 344567789999999999999999874 68899999
Q ss_pred EecccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCCCC
Q 018402 215 TLFGKDFRGSNARNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIG 261 (356)
Q Consensus 215 ~~~~~~~~~~~~~~p~~~C~~~~~CG~~g~C~~~~~~~C~C~~g~~~ 261 (356)
. +|.|+||+|+.||+||+|+.++.+.|.|++||..
T Consensus 74 ~------------~p~d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 74 S------------APKDQCDVYGFCGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred E------------ecccCCCCccccCCccEeCCCCCCceECCCCcCC
Confidence 6 4789999999999999999888889999999963
|
This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen |
| >PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity | Back alignment and domain information |
|---|
| >PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] | Back alignment and domain information |
|---|
| >cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins | Back alignment and domain information |
|---|
| >cd00028 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >smart00108 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins | Back alignment and domain information |
|---|
| >smart00473 PAN_AP divergent subfamily of APPLE domains | Back alignment and domain information |
|---|
| >cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins | Back alignment and domain information |
|---|
| >PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] | Back alignment and domain information |
|---|
| >smart00223 APPLE APPLE domain | Back alignment and domain information |
|---|
| >PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A | Back alignment and domain information |
|---|
| >PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity | Back alignment and domain information |
|---|
| >smart00108 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >smart00605 CW CW domain | Back alignment and domain information |
|---|
| >cd00028 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] | Back alignment and domain information |
|---|
| >cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 356 | |||
| 3m7h_A | 276 | Putidacin L1; monocot mannose-binding lectin, bact | 99.95 | |
| 1dlp_A | 236 | Lectin scafet precursor; two-domain lectin, beta p | 99.9 | |
| 1b2p_A | 119 | Protein (lectin); mannose-binding lectin, monocot, | 99.51 | |
| 1xd5_A | 112 | Gastrodianin-1, antifungal protein GAFP-1; monocot | 99.36 | |
| 2dpf_A | 115 | Curculin; sweet taste, taste modifying, plant prot | 99.36 | |
| 3a0c_A | 110 | Mannose/sialic acid-binding lectin; beta-prism II, | 99.32 | |
| 4h3o_A | 105 | Lectin; cadmium, plant protein; 2.17A {Allium sati | 98.95 | |
| 3dzw_A | 109 | Agglutinin; lectin, mannobiose, mannose-alpha1, 3- | 98.58 | |
| 3mez_B | 113 | Mannose-specific lectin 3 chain 2; heterotetramer, | 98.36 | |
| 3r0e_B | 110 | Lectin; carbohydrate binding, carbohydrate, sugar | 98.24 | |
| 3r0e_A | 109 | Lectin; carbohydrate binding, carbohydrate, sugar | 98.14 | |
| 3r0e_B | 110 | Lectin; carbohydrate binding, carbohydrate, sugar | 98.12 | |
| 3mez_B | 113 | Mannose-specific lectin 3 chain 2; heterotetramer, | 98.08 | |
| 3mez_A | 111 | Mannose-specific lectin 3 chain 1; heterotetramer, | 97.99 | |
| 3dzw_A | 109 | Agglutinin; lectin, mannobiose, mannose-alpha1, 3- | 97.94 | |
| 3mez_A | 111 | Mannose-specific lectin 3 chain 1; heterotetramer, | 97.89 | |
| 4h3o_A | 105 | Lectin; cadmium, plant protein; 2.17A {Allium sati | 97.87 | |
| 2dpf_A | 115 | Curculin; sweet taste, taste modifying, plant prot | 97.62 | |
| 1xd5_A | 112 | Gastrodianin-1, antifungal protein GAFP-1; monocot | 97.6 | |
| 3r0e_A | 109 | Lectin; carbohydrate binding, carbohydrate, sugar | 97.45 | |
| 1dlp_A | 236 | Lectin scafet precursor; two-domain lectin, beta p | 97.15 | |
| 1b2p_A | 119 | Protein (lectin); mannose-binding lectin, monocot, | 97.01 | |
| 3m7h_A | 276 | Putidacin L1; monocot mannose-binding lectin, bact | 96.81 | |
| 3a0c_A | 110 | Mannose/sialic acid-binding lectin; beta-prism II, | 96.78 | |
| 2ll3_A | 82 | Micronemal protein 4; cell adhesion; NMR {Toxoplas | 94.21 | |
| 4a5v_A | 161 | MIC4, micronemal protein 4; adhesion; NMR {Toxopla | 80.66 | |
| 3hms_A | 101 | Hepatocyte growth factor; HGF/SF, hormone/growth f | 80.24 |
| >3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-28 Score=225.11 Aligned_cols=168 Identities=17% Similarity=0.219 Sum_probs=115.2
Q ss_pred CCCcEEEEeecCCCCCeEEEEEEceeCCCCceeEEEEecCCCCcCC-----CceEEEccCccEEE--EcCCCCc------
Q 018402 5 YNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRE-----NAVFSLGADGNLVL--AEADGTV------ 71 (356)
Q Consensus 5 ~~g~F~lGFf~~~~~~~~l~Iw~~~~~~~~~~t~VWvANr~~Pv~~-----~~~l~l~~~GnLvL--~d~~~~~------ 71 (356)
.+|.|+||||+. ++.|| |+ +.+ +||+|||++||.+ +++|+|+.+|+||| .|+++.+
T Consensus 32 ~~g~F~lgf~~~--~~~~l---y~-----~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~~G~Lvl~~~~~~~~~vWst~~ 100 (276)
T 3m7h_A 32 PNQRFKLLLQGD--GNLVI---QD-----NGA-TVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSRRRVWLTDN 100 (276)
T ss_dssp TTSSEEEEECTT--SCEEE---EE-----TTE-EEEECSTTSTTEEEEECCCTTCCSEEEESSSEEEEEGGGTEEEEECC
T ss_pred CCCcEEEEEECC--CCeEE---EC-----CCC-eEEECCCCCCcCCcccccceEEEEeCCCcEEEEEeCCCCCEEEEeCC
Confidence 689999999943 35565 55 345 9999999999976 67899999999999 6643211
Q ss_pred --------------------------ceEEeeeccCCCCccccCce----eecCCeEEEEecCCCCCCCCcceEEEEecC
Q 018402 72 --------------------------GNFIWQSFDYPTDTLLVGQS----LRVGRVTKLVSRLSVKENVDGPHSFVMEPK 121 (356)
Q Consensus 72 --------------------------~~~lWQSFD~PTDTlLPgqk----L~~g~~~~L~Sw~s~~dps~G~fsl~l~~~ 121 (356)
+.+|||| ||||||||||| |..| ++| ++.+||++|.|+|+|+++
T Consensus 101 ~~~~~~~~~~~~~a~L~d~GNlVl~~~~~lWqS--~ptdtlLpg~~~~~~l~~g--~~L---~S~~dps~G~fsl~l~~d 173 (276)
T 3m7h_A 101 STFTSNDQWNRTHLVLQDDGNIVLVDSLALWNG--TPAIPLVPGAIDSLLLAPG--SEL---VQGVVYGAGASKLVFQGD 173 (276)
T ss_dssp CCCCCTTHHHHEEEEECTTSCEEEEEEEEEEES--CTTSCCCCSCTTCEEECSS--EEE---CTTCEEEETTEEEEECTT
T ss_pred CcccccccCCceEEEEeCCCCEEecCCceeeCc--ccccccccccccccccccC--ccc---ccCCCCCCceEEEeecCC
Confidence 3589999 99999999999 6555 467 568899999999999988
Q ss_pred C-cEEEEecCCCCCCeeEEeCCCCCCCcceEEEecCCCCcceEEEEEeCCCCceEEecCCCCceEEEEEEccCCcEEEEE
Q 018402 122 R-LAFYYKSSSAPRPILYYTFPISYNGLKSLTLKSSPGKMHELTLVDSSGDNGFIFDRPKYDSTISFLRLGIDGNLRVFT 200 (356)
Q Consensus 122 ~-~~~~~~~~~~~~~~~YW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ld~dG~l~~~~ 200 (356)
+ +.++ . ++. ..||++++.......+.+...+ .+.+ .++++.............+|++|+.||+|++|.
T Consensus 174 GnlvLy--~-~~~--~~yW~Sgt~~~~~~~l~l~~dG----nLvl--~d~~~~~vWsS~t~~~~~~rl~Ld~dGnLvly~ 242 (276)
T 3m7h_A 174 GNLVAY--G-PNG--AATWNAGTQGKGAVRAVFQGDG----NLVV--YGAGNAVLWHSHTGGHASAVLRLQANGSIAILD 242 (276)
T ss_dssp SCEEEE--C-TTS--SEEEECCCTTTTCCEEEECTTS----CEEE--ECTTSCEEEECSCTTCTTCEEEECTTSCEEEEE
T ss_pred ceEEEE--e-CCC--eEEEECCCCCCccEEEEEcCCC----eEEE--EeCCCcEEEEecCCCCCCEEEEEcCCccEEEEc
Confidence 7 3332 2 222 6899998654322233333222 2222 222232222222212224799999999999999
Q ss_pred e
Q 018402 201 Y 201 (356)
Q Consensus 201 ~ 201 (356)
|
T Consensus 243 ~ 243 (276)
T 3m7h_A 243 E 243 (276)
T ss_dssp E
T ss_pred C
Confidence 7
|
| >1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 | Back alignment and structure |
|---|
| >1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 | Back alignment and structure |
|---|
| >1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A | Back alignment and structure |
|---|
| >2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* | Back alignment and structure |
|---|
| >3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* | Back alignment and structure |
|---|
| >4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* | Back alignment and structure |
|---|
| >3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* | Back alignment and structure |
|---|
| >3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* | Back alignment and structure |
|---|
| >3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* | Back alignment and structure |
|---|
| >2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* | Back alignment and structure |
|---|
| >1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A | Back alignment and structure |
|---|
| >3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 | Back alignment and structure |
|---|
| >1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 | Back alignment and structure |
|---|
| >3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* | Back alignment and structure |
|---|
| >3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* | Back alignment and structure |
|---|
| >2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M* | Back alignment and structure |
|---|
| >4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii} | Back alignment and structure |
|---|
| >3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 356 | ||||
| d1kj1a_ | 109 | b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium | 3e-04 |
| >d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Prism II superfamily: alpha-D-mannose-specific plant lectins family: alpha-D-mannose-specific plant lectins domain: Lectin (agglutinin) species: Garlic (Allium sativum) [TaxId: 4682]
Score = 37.6 bits (87), Expect = 3e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 37 RWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDY 81
VW +N G ++ L +DGN V+ +A+G +W S
Sbjct: 38 TSVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRS---LWASHSV 79
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 356 | |||
| d1kj1a_ | 109 | Lectin (agglutinin) {Garlic (Allium sativum) [TaxI | 98.9 | |
| d1xd5a_ | 112 | Gastrodianin (antifungal protein) {Gastrodia elata | 98.8 | |
| d1jpca_ | 108 | Lectin (agglutinin) {Snowdrop (Galanthus nivalis) | 98.69 | |
| d1dlpa1 | 115 | Fetuin-binding protein Scafet precursor {Bluebell | 98.66 | |
| d1xd5a_ | 112 | Gastrodianin (antifungal protein) {Gastrodia elata | 98.54 | |
| d1dlpa2 | 120 | Fetuin-binding protein Scafet precursor {Bluebell | 98.53 | |
| d1dlpa2 | 120 | Fetuin-binding protein Scafet precursor {Bluebell | 98.42 | |
| d1b2pa_ | 119 | Lectin (agglutinin) {Bluebell (Scilla campanulata) | 98.29 | |
| d1b2pa_ | 119 | Lectin (agglutinin) {Bluebell (Scilla campanulata) | 98.26 | |
| d1jpca_ | 108 | Lectin (agglutinin) {Snowdrop (Galanthus nivalis) | 98.06 | |
| d1kj1a_ | 109 | Lectin (agglutinin) {Garlic (Allium sativum) [TaxI | 97.98 | |
| d1dlpa1 | 115 | Fetuin-binding protein Scafet precursor {Bluebell | 97.52 | |
| d2qj2a1 | 91 | Hepatocyte growth factor {Human (Homo sapiens) [Ta | 89.05 |
| >d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Prism II superfamily: alpha-D-mannose-specific plant lectins family: alpha-D-mannose-specific plant lectins domain: Lectin (agglutinin) species: Garlic (Allium sativum) [TaxId: 4682]
Probab=98.90 E-value=4.6e-09 Score=82.33 Aligned_cols=90 Identities=21% Similarity=0.359 Sum_probs=66.0
Q ss_pred CCCCcEEEEeecCCCCCeEEEEEEceeCCCCceeEEEEecCCCCcCCCceEEEccCccEEEEcCCCCcceEEeeeccCCC
Q 018402 4 IYNDPFQLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYPT 83 (356)
Q Consensus 4 ~~~g~F~lGFf~~~~~~~~l~Iw~~~~~~~~~~t~VWvANr~~Pv~~~~~l~l~~~GnLvL~d~~~~~~~~lWQSFD~PT 83 (356)
+.+|.|+|+|... ++ |.++.. .++||+||++.|+..++.|.|.++|+|||.+++ +.++|+|=
T Consensus 16 l~~g~~~l~~q~d--gn--Lvl~~~-------~~~vW~ant~~~~~~~~~l~l~~dGnLvl~~~~---g~~vW~s~---- 77 (109)
T d1kj1a_ 16 LDVEPYHFIMQED--CN--LVLYDH-------STSVWASNTGILGKKGCKAVLQSDGNFVVYDAE---GRSLWASH---- 77 (109)
T ss_dssp EEETTEEEEECTT--SC--EEEEET-------TEEEEECCCCCTTCCCCEEEECTTSCEEEECSS---SCEEEECC----
T ss_pred EEeCCEEEEecCC--Ce--EEEEeC-------CEEEEEeCCCCCCceeEEEEEcCCceEEEEeCC---CcEEEEEe----
Confidence 4578899999643 22 444432 267999999999988899999999999999987 46799871
Q ss_pred CccccCceeecCCeEEEEecCCCCCCCCcceEEEEecCC-cEEEEecCCCCCCeeEEeCC
Q 018402 84 DTLLVGQSLRVGRVTKLVSRLSVKENVDGPHSFVMEPKR-LAFYYKSSSAPRPILYYTFP 142 (356)
Q Consensus 84 DTlLPgqkL~~g~~~~L~Sw~s~~dps~G~fsl~l~~~~-~~~~~~~~~~~~~~~YW~~~ 142 (356)
+.-..|.|.+.|+++| +++| + ...|.++
T Consensus 78 -----------------------t~~~~~~~~l~L~ddGNlvly-----~---~~~W~S~ 106 (109)
T d1kj1a_ 78 -----------------------SVRGNGNYVLVLQEDGNVVIY-----G---SDIWSTG 106 (109)
T ss_dssp -----------------------CCCCSSCCEEEECTTSCEEEE-----C---CEEEECC
T ss_pred -----------------------eECCCCCEEEEEeCCCcEEEE-----C---CCEecCC
Confidence 1113577899998776 6654 1 3578875
|
| >d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} | Back information, alignment and structure |
|---|
| >d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} | Back information, alignment and structure |
|---|
| >d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} | Back information, alignment and structure |
|---|
| >d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} | Back information, alignment and structure |
|---|
| >d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
| >d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|