Citrus Sinensis ID: 018426

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MAKVGGSLSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVSKLPVIDMQSLLSEELMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVEEYLRRRLARELSGKSYLDVLRIQHGRG
ccccccccccccHHHHHHcccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccEEEEEEccccccccccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEcccccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEEcccccccEEEccccccccccccccccccHHHHHHHHHHccccccccccHHccccccc
ccccccccccHHHHHHHHcccccccHHcEccccccccccccccccccccEEEHHHccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEEEEccccccHHHHEEEEccccHcccccHcccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccEcccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHcccccccHHHHHEHccccc
makvggslsvpCVQELaknatlvvppryiradqdattiisddalvsklpvidMQSLLSEELMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKywqrpgdvegfgqsnvvseeqkldwsdtfimislpenlrkphlfpklplplrdtLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMrmnyyppcpqpekvvgltphsdgcglTILLQINEVeglqikkdrmwipltplpnafvvnvGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYArydgevypasslisentpslfRRLTVEEYLRRRLARELSGKSYLDVLRIQHGRG
makvggslsvpCVQELaknatlvvppryiRADQDATtiisddalvskLPVIDMQSLLSEELMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNVVSEEQKLDWSDTFIMISlpenlrkphlFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRAtvnsvherHSIAAFYYARYDGEVYPAsslisentpslfrRLTVEEYLRRRlarelsgksyldvlriqhgrg
MAKVGGSLSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVSKLPVIDMQsllseelmdselAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNVVSEEQKLDWSDTFIMISLPENlrkphlfpklplplrDTLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVeeylrrrlarelSGKSYLDVLRIQHGRG
********SVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVSKLPVIDMQSLLSEELMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVEEYLRRRLARELSGKSYLDVLRI*****
******S***PCVQELAKNATLVVPPRYIRAD*************SKLPVIDMQSLLSEELMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVEEYLRRRLARELSGKSYLDVLRIQ****
MAKVGGSLSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVSKLPVIDMQSLLSEELMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVEEYLRRRLARELSGKSYLDVLRIQHGRG
*******LSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVSKLPVIDMQSLLSEELMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVEEYLRRRLARELSGKSYLDVLRIQH***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAKVGGSLSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVSKLPVIDMQSLLSEELMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVEEYLRRRLARELSGKSYLDVLRIQHGRG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query356 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.971 0.966 0.595 1e-124
D4N501364 Probable 2-oxoglutarate/F N/A no 0.977 0.956 0.546 1e-108
D4N502360 Codeine O-demethylase OS= N/A no 0.977 0.966 0.533 1e-106
D4N500364 Thebaine 6-O-demethylase N/A no 0.977 0.956 0.533 1e-104
A2A1A0352 S-norcoclaurine synthase N/A no 0.963 0.974 0.418 2e-74
Q96323356 Leucoanthocyanidin dioxyg no no 0.912 0.912 0.315 2e-44
Q9LSW7365 1-aminocyclopropane-1-car no no 0.842 0.821 0.318 1e-43
Q9LTH7366 1-aminocyclopropane-1-car no no 0.921 0.896 0.327 1e-43
O04706365 Gibberellin 20 oxidase 1- N/A no 0.859 0.838 0.335 2e-43
O04707365 Gibberellin 20 oxidase 1- N/A no 0.859 0.838 0.332 3e-43
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  443 bits (1139), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/349 (59%), Positives = 263/349 (75%), Gaps = 3/349 (0%)

Query: 6   GSLSVPCVQELAKNATLV-VPPRYIRADQDATTIISDDALVSKLPVIDMQSLLSEELMDS 64
            S+ VP VQE+ K  T+  VPPRY+R+DQD T +  D  +  ++P+IDM+ L S   MDS
Sbjct: 10  SSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDS 69

Query: 65  ELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQ 124
           E+ KLD ACKEWGFFQ+VNHG+ S+FL+KVK E+Q+FFNL MEEKKK+WQRP ++EGFGQ
Sbjct: 70  EVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQ 129

Query: 125 SNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKM 184
           + VVSE+QKLDW+D F     P  LRKPHLFPKLPLP RDTLE+YS E++S+A  LI KM
Sbjct: 130 AFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKM 189

Query: 185 GKVLNIKDQEMRNFFE--NGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVE 242
            + L IK +E+   F+  + +Q MRMNYYPPCPQP++V+GLTPHSD  GLT+L+Q+N+VE
Sbjct: 190 ARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVE 249

Query: 243 GLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYA 302
           GLQIKKD  W+P+ PLPNAF+VN+GD++EIITNG YRSIEHR  VNS  ER SIA F+  
Sbjct: 250 GLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNV 309

Query: 303 RYDGEVYPASSLISENTPSLFRRLTVEEYLRRRLARELSGKSYLDVLRI 351
               EV PA SL+     + F+RLT++EY     +R L GK+YLD LRI
Sbjct: 310 GMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q96323|LDOX_ARATH Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
224061381359 predicted protein [Populus trichocarpa] 0.994 0.986 0.653 1e-138
224061385355 predicted protein [Populus trichocarpa] 0.985 0.988 0.652 1e-136
255575141364 Leucoanthocyanidin dioxygenase, putative 0.960 0.939 0.663 1e-134
225453297364 PREDICTED: protein SRG1 [Vitis vinifera] 0.960 0.939 0.622 1e-129
224061027362 predicted protein [Populus trichocarpa] 0.991 0.975 0.615 1e-128
225462507366 PREDICTED: protein SRG1 [Vitis vinifera] 1.0 0.972 0.592 1e-127
356556862353 PREDICTED: protein SRG1-like [Glycine ma 0.966 0.974 0.628 1e-125
363807040358 uncharacterized protein LOC100777264 [Gl 0.974 0.969 0.636 1e-124
147776748395 hypothetical protein VITISV_032872 [Viti 0.960 0.865 0.571 1e-123
15219988358 protein SRG1 [Arabidopsis thaliana] gi|7 0.971 0.966 0.595 1e-122
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/355 (65%), Positives = 286/355 (80%), Gaps = 1/355 (0%)

Query: 2   AKVGGSLSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVSKLPVIDMQSLLSEEL 61
           + +G SL VPCVQELAK+  + VPPRYIR DQ+   I S D  VS++PVIDMQ LL +E 
Sbjct: 6   SSLGSSLLVPCVQELAKDLLVAVPPRYIRYDQEHPIIASHDP-VSEVPVIDMQRLLDQET 64

Query: 62  MDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEG 121
           MDSEL +L  ACK WGFFQ+VNH VSS+ L+K+K ++Q+FFNL MEEKK++WQ PG++EG
Sbjct: 65  MDSELGRLHFACKTWGFFQLVNHCVSSSLLDKMKTQLQDFFNLPMEEKKRFWQYPGEIEG 124

Query: 122 FGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLI 181
           FGQ+ VVSEEQKLDW D F M++ P NLRKPHLFPKLPLP RDTLE YS+E+K+LA  ++
Sbjct: 125 FGQAFVVSEEQKLDWGDLFFMVTQPANLRKPHLFPKLPLPFRDTLESYSLEVKNLASAIL 184

Query: 182 LKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEV 241
            +MGK LNIK +EMR+F E   Q MRMNYYP CPQPE+V+GLTPHSD  GLTILLQ+NEV
Sbjct: 185 EQMGKALNIKAEEMRDFTEGIRQSMRMNYYPQCPQPEQVIGLTPHSDATGLTILLQVNEV 244

Query: 242 EGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYY 301
           EGLQ++KD  W+P+ PLPNAFVVNVGDI+EI+TNG YRSIEHRATVNS  ER S+A+F+ 
Sbjct: 245 EGLQLRKDGKWVPIKPLPNAFVVNVGDILEIVTNGAYRSIEHRATVNSKKERLSVASFHS 304

Query: 302 ARYDGEVYPASSLISENTPSLFRRLTVEEYLRRRLARELSGKSYLDVLRIQHGRG 356
            R+DG+V PA SL++E TP+LF+ + V+EY +   +REL GKSYLD LRIQ G+ 
Sbjct: 305 PRFDGKVCPAPSLVTEQTPALFKEVPVKEYFKGLFSRELVGKSYLDTLRIQDGQA 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061027|ref|XP_002300322.1| predicted protein [Populus trichocarpa] gi|222847580|gb|EEE85127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556862|ref|XP_003546739.1| PREDICTED: protein SRG1-like [Glycine max] Back     alignment and taxonomy information
>gi|363807040|ref|NP_001242069.1| uncharacterized protein LOC100777264 [Glycine max] gi|255645137|gb|ACU23067.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|147776748|emb|CAN72414.1| hypothetical protein VITISV_032872 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15219988|ref|NP_173145.1| protein SRG1 [Arabidopsis thaliana] gi|75220747|sp|Q39224.1|SRG1_ARATH RecName: Full=Protein SRG1; Short=AtSRG1; AltName: Full=Protein SENESCENCE-RELATED GENE 1 gi|5734767|gb|AAD50032.1|AC007651_27 SRG1 Protein [Arabidopsis thaliana] gi|479047|emb|CAA55654.1| SRG1 [Arabidopsis thaliana] gi|15081819|gb|AAK82564.1| F6I1.30/F6I1.30 [Arabidopsis thaliana] gi|22655018|gb|AAM98100.1| At1g17020/F6I1.30 [Arabidopsis thaliana] gi|332191410|gb|AEE29531.1| protein SRG1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.969 0.963 0.528 1.1e-96
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.969 0.969 0.515 5.7e-91
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.971 0.958 0.512 9.3e-91
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.980 0.980 0.502 1.2e-90
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.957 0.966 0.511 8.3e-90
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.952 0.931 0.381 1.8e-64
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.941 0.902 0.336 2.4e-53
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.935 0.943 0.356 2.4e-53
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.882 0.902 0.329 2.3e-48
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.949 0.931 0.319 1.2e-47
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 184/348 (52%), Positives = 236/348 (67%)

Query:     7 SLSVPCVQELAKNATLV-VPPRYIRADQDATTIISDDALVSKLPVIDMQXXXXXXXXXXX 65
             S+ VP VQE+ K  T+  VPPRY+R+DQD T +  D  +  ++P+IDM+           
Sbjct:    11 SILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSE 70

Query:    66 XAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQS 125
               KLD ACKEWGFFQ+VNHG+ S+FL+KVK E+Q+FFNL MEEKKK+WQRP ++EGFGQ+
Sbjct:    71 VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQA 130

Query:   126 NVVSEEQKLDWSDTFIMISLPENXXXXXXXXXXXXXXXDTLEVYSMELKSLAMNLILKMG 185
              VVSE+QKLDW+D F     P                 DTLE+YS E++S+A  LI KM 
Sbjct:   131 FVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMA 190

Query:   186 KVLNIKDQEMRNFFEN--GMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEG 243
             + L IK +E+   F++   +Q MRMNYYPPCPQP++V+GLTPHSD  GLT+L+Q+N+VEG
Sbjct:   191 RALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEG 250

Query:   244 LQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYAR 303
             LQIKKD  W+P+ PLPNAF+VN+GD++EIITNG YRSIEHR  VNS  ER SIA F+   
Sbjct:   251 LQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVG 310

Query:   304 YDGEVYPASSLISENTPSLFRRLTVXXXXXXXXXXXXSGKSYLDVLRI 351
                EV PA SL+     + F+RLT+             GK+YLD LRI
Sbjct:   311 MYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
D4N501DIOX2_PAPSO1, ., 1, 4, ., 1, 1, ., -0.54690.97750.9560N/Ano
D4N502DIOX3_PAPSO1, ., 1, 4, ., 1, 1, ., 3, 20.53350.97750.9666N/Ano
Q39224SRG1_ARATHNo assigned EC number0.59590.97190.9664yesno
D4N500DIOX1_PAPSO1, ., 1, 4, ., 1, 1, ., 3, 10.53310.97750.9560N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.963
4th Layer1.14.11.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00012789
hypothetical protein (359 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-178
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-110
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-95
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-72
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-71
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-64
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 1e-64
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-64
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 9e-62
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-59
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-57
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 5e-55
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 9e-55
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-51
PLN02904357 PLN02904, PLN02904, oxidoreductase 5e-51
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-47
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-46
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 5e-44
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 7e-37
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 7e-36
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-34
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 9e-34
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-33
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 6e-31
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 3e-30
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-29
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-23
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 1e-08
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  499 bits (1285), Expect = e-178
 Identities = 213/347 (61%), Positives = 259/347 (74%), Gaps = 2/347 (0%)

Query: 7   SLSVPCVQELAKNATLV-VPPRYIRADQDATTIISDDALVSKLPVIDMQSLLSEELMDSE 65
           S+ VP VQE+ K   +  VPPRY+R+DQD T I  D  L S++P+IDM+ L S   MDSE
Sbjct: 11  SIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSE 70

Query: 66  LAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQS 125
           + KLD ACKEWGFFQ+VNHG+ S+FL+KVK E+Q+FFNL MEEKKK WQRPG++EGFGQ+
Sbjct: 71  VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQA 130

Query: 126 NVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMG 185
            VVSE+QKLDW+D F +   P  LRKPHLFPKLPLP RDTLE YS E+KS+A  L  KM 
Sbjct: 131 FVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMA 190

Query: 186 KVLNIKDQEMRNFFENGM-QVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGL 244
             L IK +EM   F++ + Q +RMNYYPPCPQP++V+GLTPHSD  GLTILLQ+NEVEGL
Sbjct: 191 SALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGL 250

Query: 245 QIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARY 304
           QIKKD  W+ + PLPNA VVNVGDI+EIITNG YRSIEHR  VNS  ER S+A F+    
Sbjct: 251 QIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGM 310

Query: 305 DGEVYPASSLISENTPSLFRRLTVEEYLRRRLARELSGKSYLDVLRI 351
             E+ PA SL+     +LF+ LT +EY     +REL GK+YLD +RI
Sbjct: 311 GKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 356
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02904357 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.89
PLN03176120 flavanone-3-hydroxylase; Provisional 99.86
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.47
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.98
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.96
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 89.52
TIGR02466201 conserved hypothetical protein. This family consis 86.25
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 85.29
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.4e-84  Score=627.04  Aligned_cols=342  Identities=62%  Similarity=1.037  Sum_probs=306.9

Q ss_pred             chhHHHHHHc-CCCCCCCCCcCCCCCCCccccCCCCCCCCceeeCCCCCCcchhHHHHHHHHHHHHhcceEEEEcCCCCH
Q 018426           10 VPCVQELAKN-ATLVVPPRYIRADQDATTIISDDALVSKLPVIDMQSLLSEELMDSELAKLDSACKEWGFFQMVNHGVSS   88 (356)
Q Consensus        10 ~~~~~~~~~~-~~~~~p~~~~~p~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~Gff~l~nhGi~~   88 (356)
                      ++.|+.++.+ |+++||+.|++|+++++..........+||||||+.+.+++..++++++|.+||++||||||+||||+.
T Consensus        14 ~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~   93 (357)
T PLN02216         14 VPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDS   93 (357)
T ss_pred             chhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCH
Confidence            5679999886 899999999999988864310111225899999999876654345789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccCccccccccCCccccccccccCcCCCCCCCCCCCCCchHHHHHH
Q 018426           89 AFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEV  168 (356)
Q Consensus        89 ~l~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~  168 (356)
                      ++++++++++++||+||.|+|+++....+.++||+........+..||+|.+.+...|.....+|.||+.++.||+.+++
T Consensus        94 ~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~  173 (357)
T PLN02216         94 SFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLET  173 (357)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHH
Confidence            99999999999999999999999976555678997655444456789999998876665556789999988999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhhHHHhhcC-CceeEEEeecCCCCCCCCcccccCcccCCceeEEEecCCCCCcccc
Q 018426          169 YSMELKSLAMNLILKMGKVLNIKDQEMRNFFEN-GMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIK  247 (356)
Q Consensus       169 y~~~~~~l~~~ll~~l~~~Lgl~~~~f~~~~~~-~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV~  247 (356)
                      |+++|.+|+.+||++|+++||+++++|.+.+.+ ..+.||++|||||++++..+|+++|||+|+||||+|+++++||||+
T Consensus       174 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~  253 (357)
T PLN02216        174 YSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIK  253 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEE
Confidence            999999999999999999999999999998876 4578999999999998889999999999999999996579999999


Q ss_pred             cCCceEeCCCCCCeEEEEechhhHHHhCCcccccccccCCCCCCCccceeeeeecCCCeeEecCCCccCCCCCCCCcccc
Q 018426          248 KDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLT  327 (356)
Q Consensus       248 ~~g~W~~V~p~~g~~vVnvGd~L~~~TnG~~~S~~HRV~~~~~~~R~Si~~F~~P~~d~~i~pl~~~~~~~~p~~y~~~t  327 (356)
                      ++|+|++|+|.||++|||+||+||+||||+|||++|||+.++.++||||+||++|+.|++|.|+++|+++++|++|+++|
T Consensus       254 ~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t  333 (357)
T PLN02216        254 KDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLT  333 (357)
T ss_pred             ECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcC
Confidence            99999999999999999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCcccchhhc
Q 018426          328 VEEYLRRRLARELSGKSYLDVLRI  351 (356)
Q Consensus       328 ~~ey~~~~~~~~~~g~~~~~~~~~  351 (356)
                      |+||+..++++.+.+++.++.+||
T Consensus       334 ~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        334 TKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             HHHHHHHHHhcccCCcchhhhhcC
Confidence            999999999999999999998876

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-39
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-39
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-37
1w9y_A319 The Structure Of Acc Oxidase Length = 319 3e-34
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 5e-13
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 1e-04
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 1e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  158 bits (400), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 166/331 (50%), Gaps = 18/331 (5%)
Query: 8   LSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVS-------KLPVIDMQXXXXXX 60
           ++V  V+ LAK+  + +P  YIR  ++  +I  +D  +        ++P ID++      
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESI--NDVFLEEKKEDGPQVPTIDLKNIESDD 59
Query: 61  XXXXXXA--KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYW--QRP 116
                    +L  A  +WG   ++NHG+ +  +E+VKK  +EFF+LS+EEK+KY   Q  
Sbjct: 60  EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT 119
Query: 117 GDVEGFGQSNVVSEEQKLDWSDTFIMISLPENXXXXXXXXXXXXXXXDTLEVYSMELKSL 176
           G ++G+G     +   +L+W D F  ++ PE                +    Y+  L+ L
Sbjct: 120 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 179
Query: 177 AMNLILKMGKVLNIKDQEMRN---FFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLT 233
           A  +   +   L ++   +       E  +  M++NYYP CPQPE  +G+  H+D   LT
Sbjct: 180 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 239
Query: 234 ILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHER 293
            +L  N V GLQ+  +  W+    +P++ V+++GD +EI++NGKY+SI HR  VN    R
Sbjct: 240 FILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 294 HSIAAFYYARYDGEVY-PASSLISENTPSLF 323
            S A F     D  V  P   ++S  +P+ F
Sbjct: 299 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-155
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-142
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 7e-90
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 5e-76
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-73
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 4e-69
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  439 bits (1131), Expect = e-155
 Identities = 107/358 (29%), Positives = 190/358 (53%), Gaps = 18/358 (5%)

Query: 8   LSVPCVQELAKNATLVVPPRYIRADQDATTI-----ISDDALVSKLPVIDMQSLLSEE-- 60
           ++V  V+ LAK+  + +P  YIR  ++  +I             ++P ID++++ S++  
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61

Query: 61  LMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYW--QRPGD 118
           + ++ + +L  A  +WG   ++NHG+ +  +E+VKK  +EFF+LS+EEK+KY   Q  G 
Sbjct: 62  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121

Query: 119 VEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAM 178
           ++G+G     +   +L+W D F  ++ PE  R   ++PK P    +    Y+  L+ LA 
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181

Query: 179 NLILKMGKVLNIKDQEMRNFF---ENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTIL 235
            +   +   L ++   +       E  +  M++NYYP CPQPE  +G+  H+D   LT +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241

Query: 236 LQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHS 295
           L  N V GLQ+  +  W+    +P++ V+++GD +EI++NGKY+SI HR  VN    R S
Sbjct: 242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300

Query: 296 IAAFYYARYDGEVY-PASSLISENTPSLFRRLTVEEYLRRRLARELSGKSYLDVLRIQ 352
            A F     D  V  P   ++S  +P+ F   T  +++  +    L GK   +++  +
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK----LFGKEQEELVSEK 354
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 95.28
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.26
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.12
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 81.24
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=5.6e-83  Score=616.39  Aligned_cols=336  Identities=31%  Similarity=0.577  Sum_probs=300.5

Q ss_pred             CchhHHHHHHcCCCCCCCCCcCCCCCCCccccC---CC---CCCCCceeeCCCCCCcchh--HHHHHHHHHHHHhcceEE
Q 018426            9 SVPCVQELAKNATLVVPPRYIRADQDATTIISD---DA---LVSKLPVIDMQSLLSEELM--DSELAKLDSACKEWGFFQ   80 (356)
Q Consensus         9 ~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~---~~---~~~~iPvIDls~l~~~~~~--~~~~~~l~~A~~~~Gff~   80 (356)
                      ++++||.|+++|+.+||++|++|+++++.. ..   ..   ...+||||||+.+.+++..  .+++++|.+||++|||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~-~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~   81 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESI-NDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH   81 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTC-CCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccc-cccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEE
Confidence            456799999999999999999998777653 11   01   1247999999999765542  346799999999999999


Q ss_pred             EEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCC--CCccccccCccccccccCCccccccccccCcCCCCCCCCCCC
Q 018426           81 MVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRP--GDVEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKL  158 (356)
Q Consensus        81 l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~  158 (356)
                      |+||||+.++++++++.+++||+||.|+|+++....  ..++||+........+..||+|.|+++..|.....+|.||+.
T Consensus        82 v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~  161 (356)
T 1gp6_A           82 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT  161 (356)
T ss_dssp             EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCc
Confidence            999999999999999999999999999999998754  368999876655556788999999998766544578999999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhc---CCceeEEEeecCCCCCCCCcccccCcccCCceeEE
Q 018426          159 PLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFE---NGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTIL  235 (356)
Q Consensus       159 ~~~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~f~~~~~---~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL  235 (356)
                      +++||+.+++|+++|.+|+..||++|+++||+++++|.+.+.   .+.+.||++|||||++++..+|+++|||+|+||||
T Consensus       162 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL  241 (356)
T 1gp6_A          162 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  241 (356)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence            999999999999999999999999999999999999999987   47789999999999988888999999999999999


Q ss_pred             EecCCCCCcccccCCceEeCCCCCCeEEEEechhhHHHhCCcccccccccCCCCCCCccceeeeeecCCCe-eEecCCCc
Q 018426          236 LQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDG-EVYPASSL  314 (356)
Q Consensus       236 ~q~~~~~GLqV~~~g~W~~V~p~~g~~vVnvGd~L~~~TnG~~~S~~HRV~~~~~~~R~Si~~F~~P~~d~-~i~pl~~~  314 (356)
                      +| ++++||||+++|+|++|+|.||++|||+||+||+||||+||||+|||+.+++++|||++||++|+.|+ +|.|+++|
T Consensus       242 ~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~  320 (356)
T 1gp6_A          242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEM  320 (356)
T ss_dssp             EE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGG
T ss_pred             EE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhh
Confidence            99 67999999999999999999999999999999999999999999999998889999999999999999 99999999


Q ss_pred             cCCCCCCCCccccHHHHHHHHHHhhcCCCccc
Q 018426          315 ISENTPSLFRRLTVEEYLRRRLARELSGKSYL  346 (356)
Q Consensus       315 ~~~~~p~~y~~~t~~ey~~~~~~~~~~g~~~~  346 (356)
                      +++++|++|+++|++||+..+++.+++|+...
T Consensus       321 ~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~~  352 (356)
T 1gp6_A          321 VSVESPAKFPPRTFAQHIEHKLFGKEQEELVS  352 (356)
T ss_dssp             CCSSSCCSSCCEEHHHHHHHHHHHHHHHHC--
T ss_pred             cCCCCCccCCCccHHHHHHHHHHhccCcchhh
Confidence            99999999999999999999999988776543
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 356
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-73
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-66
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-57
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 4e-47
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  228 bits (582), Expect = 4e-73
 Identities = 104/344 (30%), Positives = 182/344 (52%), Gaps = 14/344 (4%)

Query: 8   LSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVS-----KLPVIDMQSLLS--EE 60
           ++V  V+ LAK+  + +P  YIR  ++  +I             ++P ID++++ S  E+
Sbjct: 1   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60

Query: 61  LMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRP--GD 118
           + ++ + +L  A  +WG   ++NHG+ +  +E+VKK  +EFF+LS+EEK+KY      G 
Sbjct: 61  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120

Query: 119 VEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPLPLRDTLEVYSMELKSLAM 178
           ++G+G     +   +L+W D F  ++ PE  R   ++PK P    +    Y+  L+ LA 
Sbjct: 121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 180

Query: 179 NLILKMGKVLNIKDQEMRNFF---ENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTIL 235
            +   +   L ++   +       E  +  M++NYYP CPQPE  +G+  H+D   LT  
Sbjct: 181 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-F 239

Query: 236 LQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHS 295
           +  N V GLQ+  +  W+    +P++ V+++GD +EI++NGKY+SI HR  VN    R S
Sbjct: 240 ILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299

Query: 296 IAAFYYARYDGEVY-PASSLISENTPSLFRRLTVEEYLRRRLAR 338
            A F     D  V  P   ++S  +P+ F   T  +++  +L  
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFG 343
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 89.64
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.6e-79  Score=586.85  Aligned_cols=328  Identities=31%  Similarity=0.588  Sum_probs=287.4

Q ss_pred             chhHHHHHHcCCCCCCCCCcCCCCCCCccc-----cCCCCCCCCceeeCCCCCCcchh--HHHHHHHHHHHHhcceEEEE
Q 018426           10 VPCVQELAKNATLVVPPRYIRADQDATTII-----SDDALVSKLPVIDMQSLLSEELM--DSELAKLDSACKEWGFFQMV   82 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~-----~~~~~~~~iPvIDls~l~~~~~~--~~~~~~l~~A~~~~Gff~l~   82 (356)
                      +.+|++|+++|+.+||++|++|+.+++.+.     .......+||||||+.+.+++..  ++.+++|.+||+++|||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            578999999999999999999988877541     11234568999999999877664  24679999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCC--CCccccccCccccccccCCccccccccccCcCCCCCCCCCCCCC
Q 018426           83 NHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRP--GDVEGFGQSNVVSEEQKLDWSDTFIMISLPENLRKPHLFPKLPL  160 (356)
Q Consensus        83 nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~~  160 (356)
                      ||||+.++++++++++++||+||.|+|+++....  +.+.||+...........+|.+.+.....+.....+|.||+.++
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~  162 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  162 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            9999999999999999999999999999997643  34555655444444555667665544444444567899999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhhc---CCceeEEEeecCCCCCCCCcccccCcccCCceeEEEe
Q 018426          161 PLRDTLEVYSMELKSLAMNLILKMGKVLNIKDQEMRNFFE---NGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQ  237 (356)
Q Consensus       161 ~fr~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~f~~~~~---~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q  237 (356)
                      .|++.+++|+++|.+++.+|+++++++||+++++|.+.+.   ...+.||++|||+++.+...+|+++|||+|+||||+|
T Consensus       163 ~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q  242 (349)
T d1gp6a_         163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  242 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEec
Confidence            9999999999999999999999999999999999988774   3567899999999998888999999999999999999


Q ss_pred             cCCCCCcccccCCceEeCCCCCCeEEEEechhhHHHhCCcccccccccCCCCCCCccceeeeeecCCCeeE-ecCCCccC
Q 018426          238 INEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEV-YPASSLIS  316 (356)
Q Consensus       238 ~~~~~GLqV~~~g~W~~V~p~~g~~vVnvGd~L~~~TnG~~~S~~HRV~~~~~~~R~Si~~F~~P~~d~~i-~pl~~~~~  316 (356)
                       +.++||||+++|+|++|+|.+|++|||+||+||+||||+|+||+|||+.+++++||||+||++|+.|++| +|+++|++
T Consensus       243 -~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~  321 (349)
T d1gp6a_         243 -NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS  321 (349)
T ss_dssp             -CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCC
T ss_pred             -cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcC
Confidence             7899999999999999999999999999999999999999999999999999999999999999999865 89999999


Q ss_pred             CCCCCCCccccHHHHHHHHHHh
Q 018426          317 ENTPSLFRRLTVEEYLRRRLAR  338 (356)
Q Consensus       317 ~~~p~~y~~~t~~ey~~~~~~~  338 (356)
                      +++|++|++||++||++.|+..
T Consensus       322 ~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         322 VESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             SSSCCSSCCEEHHHHHHHHHHH
T ss_pred             CCCCCCCCCccHHHHHHHHHhc
Confidence            9999999999999999998744
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure