Citrus Sinensis ID: 018433

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEccccccHHHccccccccccEEEEcccccHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHcccccHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEFSSEANQRIARISahlyppnlqmeeNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYdvvntpgvtadishmdtgavvrgflgqpqlenaltgmdlviipagvprkpgmtrddlfnINAGIVRTLCEGIakccpnatvnlisnpvnstvPIAAEVFkkagtydpkkllGVTMLDVVRANTFVAEVlgldprdvdvpvvgghagvtilpllsqvkppcsftqEETEYLTNRIQNGGTEVVeakagagsaTLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEeifqlgplneyerIGLEKAKKELAGSIQkgisfskk
Flexible Loop (DISEMBL)
MEFSSEANQRIARisahlyppnLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEvlgldprdvdvpVVGGHAGVTilpllsqvkpPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEifqlgplneYERIGLEKAKKElagsiqkgisfskk
Low Complexity Region (SEG)
MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEvlgldprdvdvpvvggHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Disordered region (IsUnstruct)
*****************LY*********SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL********************
Disordered Region (DISOPRED)
**********************************************VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK*
Disordered Region (DISEMBL)
*********RIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Disordered Region (DISPRO)
****SEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
P19446	356	Malate dehydrogenase, gly	N/A	no	0.991	0.991	0.892	0.0
P46488	356	Malate dehydrogenase, gly	N/A	no	0.997	0.997	0.884	0.0
Q42972	356	Malate dehydrogenase, gly	yes	no	1.0	1.0	0.856	1e-176
O82399	354	Probable malate dehydroge	yes	no	0.985	0.991	0.849	1e-175
P37228	353	Malate dehydrogenase, gly	yes	no	0.991	1.0	0.834	1e-174
Q9ZP05	354	Malate dehydrogenase, gly	no	no	0.991	0.997	0.854	1e-170
Q9XFW3	358	Malate dehydrogenase 2, g	N/A	no	1.0	0.994	0.843	1e-167
Q43743	358	Malate dehydrogenase 1, g	N/A	no	1.0	0.994	0.843	1e-167
P17783	347	Malate dehydrogenase, mit	N/A	no	0.867	0.890	0.676	1e-117
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	0.941	0.982	0.621	1e-117

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/353 (89%), Positives = 332/353 (94%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           M+   + NQRIARISAHL+PP  QMEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
           QVTELPFFASKVRLGR G EE++ LGPLNEYERIGLEKAKKELAGSI+KG+SF
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/355 (88%), Positives = 333/355 (93%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           M+   + NQRIARISAHL+PP  QMEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKYQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV+S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSS 300

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 355
           QVTELPFFA+KVRLGR G +E++ LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 301 QVTELPFFATKVRLGRNGIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  618 bits (1594), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 305/356 (85%), Positives = 327/356 (91%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           ME ++ A +R+ R+++HL PP  QMEE+  LR + CRAKG A GFKVAILGA+GGIGQPL
Sbjct: 1   MEDAAAAARRMERLASHLRPPASQMEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPL 60

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           A+LMK+NPLVSVLHLYDVVNTPGVTADISHM+TGAVVRGFLGQPQLENALTGMDLVIIPA
Sbjct: 61  ALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPA 120

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA VN+ISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGT 180

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVT LDVVRANTFVAEVLGLDPRDV+VPV+GGHAGVTILPLLSQV PPCSFT 
Sbjct: 181 YDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTS 240

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EE  YLT RIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDAG+VEC+FVAS
Sbjct: 241 EEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVAS 300

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           QVTELPFFASKVRLGR G EEI  LGPLNE+ER GLEKAKKELA SIQKG++F  K
Sbjct: 301 QVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFINK 356

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  613 bits (1580), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/353 (84%), Positives = 325/353 (92%), Gaps = 2/353 (0%)

Query: 6   EANQRIARISAHLYPPNL--QMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 63
           + NQRIARISAHL PPNL  Q+ + S L +  CRAKGG+ GFKVAILGAAGGIGQPLAML
Sbjct: 2   DPNQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAML 61

Query: 64  MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123
           MK+NPLVSVLHLYDV N PGVTADISHMDT AVVRGFLGQPQLE ALTGMDLVIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVP 121

Query: 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 183
           RKPGMTRDDLFNINAGIVRTL E IAKCCP A VN+ISNPVNSTVPIAAEVFKKAGT+DP
Sbjct: 122 RKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDP 181

Query: 184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 243
           KKL+GVTMLDVVRANTFVAEV+ LDPR+V+VPVVGGHAGVTILPLLSQVKPPCSFTQ+E 
Sbjct: 182 KKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEI 241

Query: 244 EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT 303
           EYLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV+FADACLRGLRGDA +VECA+VAS VT
Sbjct: 242 EYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVT 301

Query: 304 ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           ELPFFASKVRLGR G +E++ LGPLNEYER+GLEKAKKEL+ SI KG++F+KK
Sbjct: 302 ELPFFASKVRLGRCGIDEVYGLGPLNEYERMGLEKAKKELSVSIHKGVTFAKK 354

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  609 bits (1571), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 297/356 (83%), Positives = 325/356 (91%), Gaps = 3/356 (0%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           ME +S A+ RI+RI+ HL P   Q E++ CL+++ CRAKGG +GFKVAILGAAGGIGQPL
Sbjct: 1   MEANSGASDRISRIAGHLRP---QREDDVCLKRSDCRAKGGVSGFKVAILGAAGGIGQPL 57

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NPLVS+LHLYDVVNTPGVT+DISHMDTGAVVRGFLGQ QLE+AL GMDLVIIPA
Sbjct: 58  AMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPA 117

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLFNINAGIV+TLCE IAKCCP A VN+ISNPVNSTVPIAAEVFK+AGT
Sbjct: 118 GVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVISNPVNSTVPIAAEVFKRAGT 177

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAEVLG+DPRDVDVPVVGGHAG+TILPLLSQ+KPPCSFT 
Sbjct: 178 YDPKRLLGVTMLDVVRANTFVAEVLGVDPRDVDVPVVGGHAGITILPLLSQIKPPCSFTP 237

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           +E EYLT RIQNGG EVVEAKAGAGSATLSMAYAAVKFADACL  LRGDAG++ECA+VAS
Sbjct: 238 KEIEYLTGRIQNGGPEVVEAKAGAGSATLSMAYAAVKFADACLHALRGDAGIIECAYVAS 297

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           QVTELPFFASKVRLGR G EEI  LGPLN+YER  LEKAKKELA SI+KGISF +K
Sbjct: 298 QVTELPFFASKVRLGRVGVEEILPLGPLNDYERESLEKAKKELAASIEKGISFIRK 353

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1

 Score =  597 bits (1539), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 305/357 (85%), Positives = 326/357 (91%), Gaps = 4/357 (1%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQME-ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQP 59
           MEF  +ANQRIARISAHL P   QME +NS + +  CRAKGG  GFKVAILGAAGGIGQ 
Sbjct: 1   MEFRGDANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQS 57

Query: 60  LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 119
           L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIP
Sbjct: 58  LSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIP 117

Query: 120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 179
           AG+PRKPGMTRDDLF INAGIV+TLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAG
Sbjct: 118 AGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAG 177

Query: 180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFT 239
           TYDPKKLLGVT LDV RANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPP SFT
Sbjct: 178 TYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFT 237

Query: 240 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 299
            +E EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDA VVEC+FVA
Sbjct: 238 PQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVA 297

Query: 300 SQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           SQVTEL FFA+KVRLGR GAEE++QLGPLNEYERIGLEKAK ELAGSIQKG+ F +K
Sbjct: 298 SQVTELAFFATKVRLGRTGAEEVYQLGPLNEYERIGLEKAKDELAGSIQKGVEFIRK 354

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1

 Score =  588 bits (1517), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 302/358 (84%), Positives = 324/358 (90%), Gaps = 2/358 (0%)

Query: 1   MEFSSEANQRIARISAHLYPP-NLQME-ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQ 58
           MEF  +AN+RIA ISAHL P    QME +NS + +  CRAKGG  GFKVAILGAAGGIGQ
Sbjct: 1   MEFRGDANKRIAMISAHLQPSFTPQMEAKNSVMGRENCRAKGGNPGFKVAILGAAGGIGQ 60

Query: 59  PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 118
            L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVII
Sbjct: 61  SLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVII 120

Query: 119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 178
           PAGVPRKPGMTRDDLF INAGIV+TLCEG+AKCCPNA VNLISNPVNSTV IAAEVFKKA
Sbjct: 121 PAGVPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKA 180

Query: 179 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSF 238
           GTYDPKKLLGVT LDV RANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPP SF
Sbjct: 181 GTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSF 240

Query: 239 TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV 298
           T  E EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDA V+EC+FV
Sbjct: 241 TPSEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFV 300

Query: 299 ASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           ASQVTEL FFA+KVRLGR GAEE+FQLGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct: 301 ASQVTELAFFATKVRLGRTGAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2

 Score =  587 bits (1512), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 302/358 (84%), Positives = 322/358 (89%), Gaps = 2/358 (0%)

Query: 1   MEFSSEANQRIARISAHLYPP-NLQME-ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQ 58
           MEF  +A +RIA ISAHL P    QME +NS +    CRAKGG  GFKVAILGAAGGIGQ
Sbjct: 1   MEFRGDAYKRIAMISAHLQPSFTPQMEAKNSVMGLESCRAKGGNPGFKVAILGAAGGIGQ 60

Query: 59  PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 118
            L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVII
Sbjct: 61  SLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVII 120

Query: 119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 178
           PAGVPRKPGMTRDDLF INAGIVRTLCEG+AKCCPNA VNLISNPVNSTV IAAEVFKKA
Sbjct: 121 PAGVPRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKA 180

Query: 179 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSF 238
           GTYDPKKLLGVT LDV RANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPP SF
Sbjct: 181 GTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSF 240

Query: 239 TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV 298
           T  E EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDA V+EC+FV
Sbjct: 241 TPSEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFV 300

Query: 299 ASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           ASQVTEL FFA+KVRLGR GAEE+FQLGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct: 301 ASQVTELAFFATKVRLGRTGAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  423 bits (1088), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/309 (67%), Positives = 245/309 (79%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H++T + V G++G+ Q
Sbjct: 36  KVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQ 95

Query: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
           L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV++LC  IAK CPNA +N+ISNPVN
Sbjct: 96  LGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISNPVN 155

Query: 166 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 225
           STVPIAAEVFKKAGTYD KKL GVT LDVVRA TF A    +   +V+VPV+GGHAG+TI
Sbjct: 156 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAGITI 215

Query: 226 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285
           LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+G
Sbjct: 216 LPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKG 275

Query: 286 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 345
           L G   VVEC+FV S VTELPFFASKV+LG+ G E +  LGPL+++E+ GLEK K EL  
Sbjct: 276 LNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKEGLEKLKPELKA 335

Query: 346 SIQKGISFS 354
           SI+KGI F+
Sbjct: 336 SIEKGIQFA 344

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/338 (62%), Positives = 254/338 (75%), Gaps = 3/338 (0%)

Query: 22  NLQMEENSCLRQAKCR---AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 78
           ++ +  ++  +QA  R   + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+
Sbjct: 4   SMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDI 63

Query: 79  VNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINA 138
            NTPGV AD+ H++T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFNINA
Sbjct: 64  ANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINA 123

Query: 139 GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 198
           GIV+ LC  IAK CP+A +N+ISNPVNSTVPIAAE+FKKAG YD KKL GVT LDVVRA 
Sbjct: 124 GIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRAR 183

Query: 199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVV 258
           TF A    +   +V+VPV+GGHAGVTILPL SQ  P  + + +    LT R Q+GGTEVV
Sbjct: 184 TFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVV 243

Query: 259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQG 318
           EAKAG GSATLSMAYA   FADACL+GL G   V+EC++V S +TELPFFASKVRLG+ G
Sbjct: 244 EAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKNG 303

Query: 319 AEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
            EE+  LGPL+++E+ GLE  K EL  SI+KG+ F+ +
Sbjct: 304 VEEVLDLGPLSDFEKEGLEALKPELKSSIEKGVKFANQ 341

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
359475502	356	PREDICTED: malate dehydrogenase, glyoxys	1.0	1.0	0.915	0.0
255562058	356	malate dehydrogenase, putative [Ricinus	1.0	1.0	0.904	0.0
224103817	354	predicted protein [Populus trichocarpa]	0.994	1.0	0.889	0.0
118489009	354	unknown [Populus trichocarpa x Populus d	0.994	1.0	0.892	0.0
60593475	362	Chain A, Mature And Translocatable Forms	0.991	0.975	0.892	0.0
126894	356	RecName: Full=Malate dehydrogenase, glyo	0.991	0.991	0.892	0.0
1170897	356	RecName: Full=Malate dehydrogenase, glyo	0.997	0.997	0.884	0.0
449451347	356	PREDICTED: malate dehydrogenase, glyoxys	0.997	0.997	0.884	0.0
224056321	356	predicted protein [Populus trichocarpa]	1.0	1.0	0.887	0.0
158712040	354	malate dehydrogenase [Perilla frutescens	0.985	0.991	0.898	0.0

>gi|359475502|ref|XP_003631692.1| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|147774268|emb|CAN65552.1| hypothetical protein VITISV_033330 [Vitis vinifera] gi|297736349|emb|CBI25072.3| unnamed protein product [Vitis vinifera]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/356 (91%), Positives = 342/356 (96%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           M+ ++EANQRIAR+SAHLYP   QMEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPTAEANQRIARLSAHLYPSVRQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPA 120

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGH+GVTILPLLSQVKPPCSFT 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTP 240

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EET+YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVEC FVAS
Sbjct: 241 EETQYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECTFVAS 300

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           QVTELPFFA+KVRLGR GAEEI+QLGPLNEYER+GLEKAKKELAGSI KGISF +K
Sbjct: 301 QVTELPFFATKVRLGRSGAEEIYQLGPLNEYERVGLEKAKKELAGSIAKGISFIRK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562058|ref|XP_002522037.1| malate dehydrogenase, putative [Ricinus communis] gi|223538636|gb|EEF40237.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/356 (90%), Positives = 340/356 (95%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           M+ S+EA QRIARISAHL+PPN QME +S L++A CRAKGG+ GFKVAILGAAGGIGQPL
Sbjct: 1   MDSSAEAAQRIARISAHLHPPNFQMEGSSALKRADCRAKGGSPGFKVAILGAAGGIGQPL 60

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVVIPA 120

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKPPCSFT 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTS 240

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EETEYLT RIQ+GGTEVV+AKAGAGSATLSMAYAAVKFADACLRGLRGDAG+VEC+FVAS
Sbjct: 241 EETEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGIVECSFVAS 300

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           QVTELPFFA+KVRLGR GAEE++QLGPLNEYERIGLEKAKKEL  SIQKGISF KK
Sbjct: 301 QVTELPFFATKVRLGRNGAEEVYQLGPLNEYERIGLEKAKKELEASIQKGISFIKK 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103817|ref|XP_002313205.1| predicted protein [Populus trichocarpa] gi|118487242|gb|ABK95449.1| unknown [Populus trichocarpa] gi|222849613|gb|EEE87160.1| predicted protein [Populus trichocarpa]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/354 (88%), Positives = 335/354 (94%)

Query: 3   FSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM 62
             S ANQRIAR+SAHL PPN QMEE+  L++  CRAKGGA GFKVAILGAAGGIGQPLAM
Sbjct: 1   MESVANQRIARVSAHLQPPNSQMEESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAM 60

Query: 63  LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122
           LMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGV
Sbjct: 61  LMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGV 120

Query: 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 182
           PRKPGMTRDDLF INAGIVRTLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 121 PRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180

Query: 183 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEE 242
           PK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQ KPP SFT EE
Sbjct: 181 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEE 240

Query: 243 TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV 302
           TEYLT RIQ+GGTEVV+AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAF+AS+V
Sbjct: 241 TEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFIASEV 300

Query: 303 TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           TELPFFA+KVRLGR+GAEE++QLGPLNEYER+GL+KAKKELA SIQKGISF +K
Sbjct: 301 TELPFFATKVRLGRRGAEEVYQLGPLNEYERVGLQKAKKELAESIQKGISFIRK 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489009|gb|ABK96312.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/354 (89%), Positives = 334/354 (94%)

Query: 3   FSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM 62
             S ANQRIAR+SAHL PPN QMEE+  L++  CRAKGGA GFKVAILGAAGGIGQPLAM
Sbjct: 1   MESVANQRIARVSAHLQPPNSQMEESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAM 60

Query: 63  LMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 122
           LMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV
Sbjct: 61  LMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 120

Query: 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 182
           PRKPGMTRDDLF INAGIVRTLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYD
Sbjct: 121 PRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180

Query: 183 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEE 242
           PK+LLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQ KPP SFT EE
Sbjct: 181 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEE 240

Query: 243 TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV 302
           TEYLT RIQ+GGTEVV+AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS+V
Sbjct: 241 TEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASEV 300

Query: 303 TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           TELPFFA+KVRLGR+GAEE++QLGPLNEYER+GL+KAKKELA SIQKG SF +K
Sbjct: 301 TELPFFATKVRLGRRGAEEVYQLGPLNEYERVGLQKAKKELAESIQKGTSFIRK 354

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60593475|pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593476|pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/353 (89%), Positives = 332/353 (94%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           M+   + NQRIARISAHL+PP  QMEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
           QVTELPFFASKVRLGR G EE++ LGPLNEYERIGLEKAKKELAGSI+KG+SF
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126894|sp|P19446.1|MDHG_CITLA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|167284|gb|AAA33041.1| glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37) [Citrullus lanatus subsp. vulgaris]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/353 (89%), Positives = 332/353 (94%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           M+   + NQRIARISAHL+PP  QMEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
           QVTELPFFASKVRLGR G EE++ LGPLNEYERIGLEKAKKELAGSI+KG+SF
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170897|sp|P46488.1|MDHG_CUCSA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|695311|gb|AAC41647.1| glyoxysomal malate dehydrogenase [Cucumis sativus]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/355 (88%), Positives = 333/355 (93%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           M+   + NQRIARISAHL+PP  QMEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKYQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV+S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSS 300

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 355
           QVTELPFFA+KVRLGR G +E++ LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 301 QVTELPFFATKVRLGRNGIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451347|ref|XP_004143423.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus] gi|449499834|ref|XP_004160930.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/355 (88%), Positives = 333/355 (93%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           M+   + NQRIARISAHL+PP  QMEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKYQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLVVIPA 120

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAEVLGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV+S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSS 300

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 355
           QVTELPFFA+KVRLGR G +E++ LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 301 QVTELPFFATKVRLGRNGIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056321|ref|XP_002298801.1| predicted protein [Populus trichocarpa] gi|222846059|gb|EEE83606.1| predicted protein [Populus trichocarpa]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/356 (88%), Positives = 335/356 (94%)

Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           ME   EA+QRIARISAHL PPN Q EE+  L++A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MESIREASQRIARISAHLQPPNSQTEESCVLKRADCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NP VSVLHLYDVVNTPGVTADI HMDTGAVVRGFLGQPQLENALTGMDLVIIPA
Sbjct: 61  AMLMKMNPSVSVLHLYDVVNTPGVTADIGHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120

Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLFNINAGIV TLCEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVITLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAEVLGL P++VDVPVVGGHAGVTILPLLSQVKPP SFT 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLHPKEVDVPVVGGHAGVTILPLLSQVKPPSSFTP 240

Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EETEYLT RIQ+GGTEVV+AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS
Sbjct: 241 EETEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300

Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           +VTELPFFA+KVRLGR+GAEE++QLGPLNEYER+GL +AKKELA SIQKG+SF +K
Sbjct: 301 EVTELPFFATKVRLGRRGAEEVYQLGPLNEYERVGLGRAKKELAESIQKGVSFIRK 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158712040|gb|ABW79813.1| malate dehydrogenase [Perilla frutescens]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/353 (89%), Positives = 333/353 (94%), Gaps = 2/353 (0%)

Query: 6   EANQRIARISAHLYPPNLQM--EENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 63
           EANQRIARISAHL+P N QM  E +  LR A CRAKGGA GFKVAILGAAGGIGQPL+ML
Sbjct: 2   EANQRIARISAHLHPSNPQMGSEHHPILRAADCRAKGGAPGFKVAILGAAGGIGQPLSML 61

Query: 64  MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123
           MK+NPLVSVLHLYDVVN PGVTAD+SHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVVNAPGVTADVSHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVP 121

Query: 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 183
           RKPGMTRDDLFNINAGIVRTLCEGIAK CPNA VNLISNPVNSTVPIAAEVFKKAGTYDP
Sbjct: 122 RKPGMTRDDLFNINAGIVRTLCEGIAKSCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDP 181

Query: 184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 243
           KKLLGVTMLDVVRANTFVAEVLGLDPR+V VPVVGGHAGVTILPLLSQVKPPCSFT EET
Sbjct: 182 KKLLGVTMLDVVRANTFVAEVLGLDPREVSVPVVGGHAGVTILPLLSQVKPPCSFTPEET 241

Query: 244 EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT 303
           EYLT RIQ+GGTEVV+AKAGAGSATLSMAYAAVKFAD CLRGL+GDAG+VECAFVASQVT
Sbjct: 242 EYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADLCLRGLKGDAGIVECAFVASQVT 301

Query: 304 ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           +LPFFA+KVRLGR GAEE+FQLGPLNEYER+GLEKAKKELA SIQKG+SF KK
Sbjct: 302 DLPFFATKVRLGRGGAEEVFQLGPLNEYERVGLEKAKKELAVSIQKGVSFIKK 354

Source: Perilla frutescens

Species: Perilla frutescens

Genus: Perilla

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.985	0.991	0.815	1.3e-148
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.839	0.823	0.811	2.4e-124
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.941	0.982	0.603	1.6e-102
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.873	0.912	0.646	8.8e-102
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.882	0.779	0.604	4.1e-97
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.929	0.985	0.534	6.7e-88
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.898	0.949	0.540	2e-86
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.870	0.917	0.548	2.4e-85
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.870	0.917	0.548	2.4e-85
WB|WBGene00003162	341	mdh-2 [Caenorhabditis elegans	0.926	0.967	0.535	2.4e-85

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1451 (515.8 bits), Expect = 1.3e-148, P = 1.3e-148
 Identities = 288/353 (81%), Positives = 310/353 (87%)

Query:     6 EANQRIARISAHLYPPNL--QMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAML 63
             + NQRIARISAHL PPNL  Q+ + S L +  CRAKGG+ GFKVAILGAAGGIGQPLAML
Sbjct:     2 DPNQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAML 61

Query:    64 MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123
             MK+NPLVSVLHLYDV N PGVTADISHMDT AVVRGFLGQPQLE ALTGMDLVIIPAGVP
Sbjct:    62 MKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVP 121

Query:   124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 183
             RKPGMTRDDLFNINAGIVRTL E IAKCCP A VN+ISNPVNSTVPIAAEVFKKAGT+DP
Sbjct:   122 RKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDP 181

Query:   184 KKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEET 243
             KKL+GVTMLDVVRANTFVAE                HAGVTILPLLSQVKPPCSFTQ+E 
Sbjct:   182 KKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEI 241

Query:   244 EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT 303
             EYLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV+FADACLRGLRGDA +VECA+VAS VT
Sbjct:   242 EYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVT 301

Query:   304 ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
             ELPFFASKVRLGR G +E++ LGPLNEYER+GLEKAKKEL+ SI KG++F+KK
Sbjct:   302 ELPFFASKVRLGRCGIDEVYGLGPLNEYERMGLEKAKKELSVSIHKGVTFAKK 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 246/303 (81%), Positives = 261/303 (86%)

Query:     1 MEFSSEANQRIARISAHLYPPNLQME-ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQP 59
             MEF  +ANQRIARISAHL P   QME +NS + +  CRAKGG  GFKVAILGAAGGIGQ 
Sbjct:     1 MEFRGDANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQS 57

Query:    60 LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 119
             L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIP
Sbjct:    58 LSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIP 117

Query:   120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG 179
             AG+PRKPGMTRDDLF INAGIV+TLCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAG
Sbjct:   118 AGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAG 177

Query:   180 TYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFT 239
             TYDPKKLLGVT LDV RANTFVAE                HAGVTILPLLSQVKPP SFT
Sbjct:   178 TYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFT 237

Query:   240 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 299
              +E EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA KFADACLRGLRGDA VVEC+FVA
Sbjct:   238 PQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVA 297

Query:   300 SQV 302
             SQV
Sbjct:   298 SQV 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 204/338 (60%), Positives = 244/338 (72%)

Query:    22 NLQMEENSCLRQAKCR---AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 78
             ++ +  ++  +QA  R   + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+
Sbjct:     4 SMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDI 63

Query:    79 VNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINA 138
              NTPGV AD+ H++T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFNINA
Sbjct:    64 ANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINA 123

Query:   139 GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 198
             GIV+ LC  IAK CP+A +N+ISNPVNSTVPIAAE+FKKAG YD KKL GVT LDVVRA 
Sbjct:   124 GIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRAR 183

Query:   199 TFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVV 258
             TF A                 HAGVTILPL SQ  P  + + +    LT R Q+GGTEVV
Sbjct:   184 TFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVV 243

Query:   259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQG 318
             EAKAG GSATLSMAYA   FADACL+GL G   V+EC++V S +TELPFFASKVRLG+ G
Sbjct:   244 EAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKNG 303

Query:   319 AEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
              EE+  LGPL+++E+ GLE  K EL  SI+KG+ F+ +
Sbjct:   304 VEEVLDLGPLSDFEKEGLEALKPELKSSIEKGVKFANQ 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
 Identities = 201/311 (64%), Positives = 231/311 (74%)

Query:    46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
             KV ILGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   
Sbjct:    31 KVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDD 90

Query:   106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
             L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ L   IAK CP A VN+ISNPVN
Sbjct:    91 LGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVN 150

Query:   166 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 225
             STVPIAAE+FKKAGTYD KKL GVT LDVVRA TF A                 HAG+TI
Sbjct:   151 STVPIAAEIFKKAGTYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAGITI 210

Query:   226 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285
             LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+G
Sbjct:   211 LPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKG 270

Query:   286 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 345
             L G   VVEC+FV S +TELPFFASKVRLG+ G EE+  LGPL+++E+ GLE  K EL  
Sbjct:   271 LNGVPNVVECSFVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALKAELKS 330

Query:   346 SIQKGISFSKK 356
             SI+KGI F+ +
Sbjct:   331 SIEKGIKFANQ 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 191/316 (60%), Positives = 237/316 (75%)

Query:    43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG 102
             A +KVA+LGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G
Sbjct:    81 ASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTG 140

Query:   103 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162
               +L + L  +++V+IPAGVPRKPGMTRDDLFNINA IV+TL E +A+ CPNA +++ISN
Sbjct:   141 PSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISN 200

Query:   163 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 222
             PVNSTVPIAAEV KK G YDPKKL GVT LDVVRANTFV++                HAG
Sbjct:   201 PVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAG 260

Query:   223 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 282
             +TILPLLS+ KP  +FT EE + LT RIQN GTEVV+AKAGAGSATLSMAYAA +F ++ 
Sbjct:   261 ITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSMAYAAARFVESS 320

Query:   283 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ--LGPLNEYERIGLEKAK 340
             LR L GD  V EC+FV S +T+LPFFAS+V++G+ G E + +  L  L EYE+  LE  K
Sbjct:   321 LRALDGDGDVYECSFVESTLTDLPFFASRVKIGKNGLEAVIESDLQGLTEYEQKALEALK 380

Query:   341 KELAGSIQKGISFSKK 356
              EL  SI KG++F+ K
Sbjct:   381 VELKASIDKGVAFANK 396

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 177/331 (53%), Positives = 230/331 (69%)

Query:    24 QMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 83
             Q+ +   L+  +  + G    +KV + GAAGGIGQPL++L+K NPLV+ L LYD+V+TPG
Sbjct:     4 QVTKQLALQGVRTFSVGQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIVHTPG 63

Query:    84 VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT 143
             V AD+SH+DT +   GF+G  QL ++L G D+V+IPAGVPRKPGMTRDDLFN+NAGI++ 
Sbjct:    64 VAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKD 123

Query:   144 LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 203
             +   IAK CP A V +I+NPVN+ VPIAAE+ KKAG YDPK+L GV+ LDVVRA  F+  
Sbjct:   124 ISNSIAKNCPKALVAIITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARAFIGH 183

Query:   204 XXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 263
                             H+GVTILP+LSQ +P     Q+  E LT RIQ  GTEVV+AKAG
Sbjct:   184 ALGVDPQTVQIPVIGGHSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAG 243

Query:   264 AGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIF 323
             AGSATLSMAYA  +FA + L+GL G+  V+EC++V S VTE  FF++ + LG+ G +E  
Sbjct:   244 AGSATLSMAYAGARFAGSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQENL 303

Query:   324 QLGPLNEYERIGLEKAKKELAGSIQKGISFS 354
              L  LN+YE+  LE A  EL  +IQKGI F+
Sbjct:   304 GLPKLNDYEKKLLEAAIPELKKNIQKGIDFA 334

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 174/322 (54%), Positives = 222/322 (68%)

Query:    36 CRAKGGAA--GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT 93
             CR    +A    KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T
Sbjct:    13 CRGLATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 72

Query:    94 GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 153
              A V+GFLG  QL   L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    AK CP
Sbjct:    73 RANVKGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTTACAKHCP 132

Query:   154 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXX 213
              A + +ISNPVNST+PI +EVFKK G Y+P ++ GVT LD+VRANTFVAE          
Sbjct:   133 EAMICIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVS 192

Query:   214 XXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY 273
                   HAG TI+PL+SQ  P   F Q++ E LT RIQ  GTEVV+AKAGAGSATLSMAY
Sbjct:   193 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAGAGSATLSMAY 252

Query:   274 AAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYER 333
             A  +F  + +  + G  GV+EC+FV S+ TE P+F++ + LG+ G E+   +G +  +E 
Sbjct:   253 AGARFVFSLVDAMNGKEGVIECSFVRSEETESPYFSTPLLLGKNGIEKNLGIGKITPFEE 312

Query:   334 IGLEKAKKELAGSIQKGISFSK 355
               + +A  EL  SI+KG  F+K
Sbjct:   313 KMVAEAMAELKASIKKGEDFAK 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 170/310 (54%), Positives = 219/310 (70%)

Query:    46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
             KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 145

Query:   166 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 225
             ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct:   146 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 205

Query:   226 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285
             +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct:   206 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 265

Query:   286 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 345
             + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E   + +A  EL  
Sbjct:   266 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 325

Query:   346 SIQKGISFSK 355
             SI+KG  F K
Sbjct:   326 SIKKGEEFVK 335

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 170/310 (54%), Positives = 219/310 (70%)

Query:    46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
             KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 145

Query:   166 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 225
             ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct:   146 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 205

Query:   226 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285
             +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct:   206 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 265

Query:   286 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 345
             + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E   + +A  EL  
Sbjct:   266 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 325

Query:   346 SIQKGISFSK 355
             SI+KG  F K
Sbjct:   326 SIKKGEEFVK 335

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00003162 mdh-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 179/334 (53%), Positives = 230/334 (68%)

Query:    23 LQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP 82
             +Q   NS LR    R    A   KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVNTP
Sbjct:     9 VQAAANSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTP 66

Query:    83 GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVR 142
             GV AD+SH+D+ A V    G  +L  A+   D+++IPAGVPRKPGMTRDDLFN NAGIVR
Sbjct:    67 GVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVR 126

Query:   143 TLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA 202
              L   IAK  P A + +I+NPVNSTVPIA+EV KKAG YDPK++ GVT LDVVR+  FV+
Sbjct:   127 DLAAVIAKASPKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVS 186

Query:   203 EXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKA 262
             E                HAG+TI+PLLSQVKP   F++EE   LT RIQ+ GTEVV AKA
Sbjct:   187 ELKGHDASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKA 246

Query:   263 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTE-LPFFASKVRLGRQGAEE 321
             GAGSATLSMA A  +FA+A +RG++G+  V +CA+VAS   + + +F++ V LG  G E+
Sbjct:   247 GAGSATLSMALAGARFANALVRGIKGEKNV-QCAYVASDAVKGVEYFSTPVELGPNGVEK 305

Query:   322 IFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 355
             I  +G ++ YE+  ++ +  EL  +I KG++F K
Sbjct:   306 ILGVGKVSAYEQKLIDASVPELNKNIAKGVAFVK 339

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;ISS

GO:0006108 "malate metabolic process" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005739 "mitochondrion" evidence=ISS;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C0PZQ4	MDH_SALPC	1, ., 1, ., 1, ., 3, 7	0.5541	0.8707	0.9935	yes	no
Q43744	MDHM_BRANA	1, ., 1, ., 1, ., 3, 7	0.6090	0.9213	0.9618	N/A	no
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.8435	1.0	0.9944	N/A	no
B5BGR3	MDH_SALPK	1, ., 1, ., 1, ., 3, 7	0.5541	0.8707	0.9935	yes	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.5806	0.8707	0.9171	yes	no
Q1CEJ3	MDH_YERPN	1, ., 1, ., 1, ., 3, 7	0.5498	0.8623	0.9839	yes	no
Q9KUT3	MDH_VIBCH	1, ., 1, ., 1, ., 3, 7	0.5559	0.8679	0.9935	yes	no
A9R584	MDH_YERPG	1, ., 1, ., 1, ., 3, 7	0.5498	0.8623	0.9839	yes	no
Q42972	MDHG_ORYSJ	1, ., 1, ., 1, ., 3, 7	0.8567	1.0	1.0	yes	no
Q1CBY7	MDH_YERPA	1, ., 1, ., 1, ., 3, 7	0.5498	0.8623	0.9839	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.5806	0.8707	0.9171	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.6698	0.8735	0.8962	N/A	no
B7LRL0	MDH_ESCF3	1, ., 1, ., 1, ., 3, 7	0.5477	0.8707	0.9935	yes	no
P83373	MDHM_FRAAN	1, ., 1, ., 1, ., 3, 7	0.6623	0.8735	0.9174	N/A	no
P17783	MDHM_CITLA	1, ., 1, ., 1, ., 3, 7	0.6763	0.8679	0.8904	N/A	no
Q9ZP05	MDHG1_ARATH	1, ., 1, ., 1, ., 3, 7	0.8543	0.9915	0.9971	no	no
A7FMU2	MDH_YERP3	1, ., 1, ., 1, ., 3, 7	0.5498	0.8623	0.9839	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.8845	0.9971	0.9971	N/A	no
P61892	MDH_YERPE	1, ., 1, ., 1, ., 3, 7	0.5498	0.8623	0.9839	yes	no
A7MWD3	MDH_VIBHB	1, ., 1, ., 1, ., 3, 7	0.5718	0.8679	0.9935	yes	no
A4TRK3	MDH_YERPP	1, ., 1, ., 1, ., 3, 7	0.5498	0.8623	0.9839	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.5774	0.8707	0.9171	yes	no
Q7MP97	MDH_VIBVY	1, ., 1, ., 1, ., 3, 7	0.5591	0.8651	0.9935	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.8435	1.0	0.9944	N/A	no
P37228	MDHG_SOYBN	1, ., 1, ., 1, ., 3, 7	0.8342	0.9915	1.0	yes	no
P0C7R5	MDH_YERPS	1, ., 1, ., 1, ., 3, 7	0.5498	0.8623	0.9839	yes	no
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.5530	0.8623	0.9839	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5628	0.9269	0.9677	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.5806	0.8707	0.9171	yes	no
B4T769	MDH_SALNS	1, ., 1, ., 1, ., 3, 7	0.5541	0.8707	0.9935	yes	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.5509	0.8707	0.9935	yes	no
B4TWK9	MDH_SALSV	1, ., 1, ., 1, ., 3, 7	0.5541	0.8707	0.9935	yes	no
Q6D9D1	MDH_ERWCT	1, ., 1, ., 1, ., 3, 7	0.5495	0.8679	0.9935	yes	no
B1JMK1	MDH_YERPY	1, ., 1, ., 1, ., 3, 7	0.5498	0.8623	0.9839	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.5774	0.8707	0.9171	yes	no
C6DKH1	MDH_PECCP	1, ., 1, ., 1, ., 3, 7	0.5559	0.8679	0.9903	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.8923	0.9915	0.9915	N/A	no
Q5R030	MDH_IDILO	1, ., 1, ., 1, ., 3, 7	0.5641	0.8623	0.9903	yes	no
Q42686	MDHM_CHLRE	1, ., 1, ., 1, ., 3, 7	0.6442	0.8707	0.8310	N/A	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.5806	0.8707	0.9171	yes	no
P25077	MDH_SALTY	1, ., 1, ., 1, ., 3, 7	0.5541	0.8707	0.9935	yes	no
O82399	MDHG2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8498	0.9859	0.9915	yes	no
B2K2N5	MDH_YERPB	1, ., 1, ., 1, ., 3, 7	0.5498	0.8623	0.9839	yes	no
B7VID0	MDH_VIBSL	1, ., 1, ., 1, ., 3, 7	0.5591	0.8679	0.9935	yes	no
Q87SU7	MDH_VIBPA	1, ., 1, ., 1, ., 3, 7	0.5654	0.8679	0.9935	yes	no
Q4R568	MDHM_MACFA	1, ., 1, ., 1, ., 3, 7	0.5806	0.8707	0.9171	N/A	no
Q8Z3E0	MDH_SALTI	1, ., 1, ., 1, ., 3, 7	0.5541	0.8707	0.9935	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.998
3rd Layer	1.1.1.37	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Mdhg	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (356 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003727001	RecName- Full=Citrate synthase; (472 aa)				•	•	•	•		0.956
	GSVIVG00017898001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa)						•	•		0.941
	GSVIVG00028048001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (470 aa)						•	•		0.929
	VVME2	RecName- Full=Malic enzyme; (591 aa)						•	•		0.905
	NADP-ME	RecName- Full=Malic enzyme; (496 aa)						•	•		0.905
	GSVIVG00016723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa)						•	•		0.903
	GSVIVG00032723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa)						•	•		0.903
	GSVIVG00032463001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (450 aa)						•	•		0.902
	GSVIVG00026767001	RecName- Full=Malic enzyme; (605 aa)						•	•		0.902
	GSVIVG00018984001	RecName- Full=Malic enzyme; (625 aa)						•	•		0.902

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	0.0
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-151
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-145
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-142
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	4e-80
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	6e-58
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	2e-54
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	6e-47
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	7e-46
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	3e-36
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	6e-34
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	7e-32
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	1e-31
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	2e-27
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	2e-23
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	2e-22
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	1e-20
cd00704	323	cd00704, MDH, Malate dehydrogenase	6e-18
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	8e-18
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	5e-16
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	6e-15
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	8e-14
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	2e-13
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	7e-13
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	1e-12
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	2e-11
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	3e-10
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	6e-08
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	7e-08
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	1e-05
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	0.002

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  657 bits (1697), Expect = 0.0
 Identities = 253/325 (77%), Positives = 275/325 (84%), Gaps = 2/325 (0%)

Query: 25  MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 84
             E S LR   CRAKGGA GFKVA+LGAAGGIGQPL++LMK+NPLVS LHLYD+ NTPGV
Sbjct: 1   SMEASSLRA--CRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV 58

Query: 85  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 144
            AD+SH++T A VRGFLG  QL +AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+TL
Sbjct: 59  AADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTL 118

Query: 145 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 204
           CE +AK CPNA VN+ISNPVNSTVPIAAEV KKAG YDPKKL GVT LDVVRANTFVAE 
Sbjct: 119 CEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEK 178

Query: 205 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 264
            GLDP DVDVPVVGGHAG+TILPLLSQ  P  SFT EE E LT RIQNGGTEVVEAKAGA
Sbjct: 179 KGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGA 238

Query: 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 324
           GSATLSMAYAA +FADACLRGL G+A VVEC++V S+VTELPFFASKVRLGR G EE+  
Sbjct: 239 GSATLSMAYAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLG 298

Query: 325 LGPLNEYERIGLEKAKKELAGSIQK 349
           LGPL+EYE+ GLE  K EL  SI+K
Sbjct: 299 LGPLSEYEQKGLEALKPELKASIEK 323

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  570 bits (1473), Expect = 0.0
 Identities = 212/309 (68%), Positives = 253/309 (81%)

Query: 45  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 104
            KVA+LGAAGGIGQPL++L+K+NPLVS L LYD+VNTPGV AD+SH++T A V G+LG  
Sbjct: 1   VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPE 60

Query: 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 164
           +L+ AL G D+V+IPAGVPRKPGMTRDDLFNINAGIVR L   +AK CP A + +ISNPV
Sbjct: 61  ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 165 NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 224
           NSTVPIAAEV KKAG YDPK+L GVT LDVVRANTFVAE+LGLDP  V+VPV+GGH+GVT
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVT 180

Query: 225 ILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLR 284
           ILPLLSQ +PP +F QEE E LT+RIQ GG EVV+AKAGAGSATLSMAYA  +FA++ LR
Sbjct: 181 ILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR 240

Query: 285 GLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 344
           GL+G+ GV+ECA+V S VTE PFFA+ V LG+ G E+   LG LN+YE+  LE A  EL 
Sbjct: 241 GLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELK 300

Query: 345 GSIQKGISF 353
            +I+KG+ F
Sbjct: 301 KNIEKGVDF 309

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  429 bits (1104), Expect = e-151
 Identities = 185/312 (59%), Positives = 233/312 (74%), Gaps = 1/312 (0%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           KVA+LGAAGGIGQPL++L+K+ P VS L LYD+    GV AD+SH+ T A V+GF G+  
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
           LENAL G D+V+IPAGVPRKPGMTRDDLFN+NAGIV+ L   +A+ CP A + +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 166 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 225
           STVPIAAEV KK G YDP KL GVT LD+VRANTFVAE+ G DP +V+VPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 226 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285
           +PL+SQ      FT+++ E L +RIQN GTEVV+AKAGAGSATLSMA+A  +F  + +RG
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240

Query: 286 LRGDAGVVECAFVASQ-VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 344
           L+G+ GVVECA+V S  VTE  FFA+ + LG+ G E+   +G L+ +E   L  A  EL 
Sbjct: 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELK 300

Query: 345 GSIQKGISFSKK 356
            +I+KG  F   
Sbjct: 301 KNIKKGEEFVAS 312

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  412 bits (1061), Expect = e-145
 Identities = 176/313 (56%), Positives = 214/313 (68%), Gaps = 4/313 (1%)

Query: 46  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 103
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L E +AK CP A + +I+NP
Sbjct: 62  -DPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 223
           VN+TV IAAEV KKAG YD  KL GVT LDV+R+ TFVAE+ G  P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 224 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 283
           TILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 284 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 343
           R L+G+ GVVECA+V        FFA  V LG+ G EE   +G L+ +E+  LE     L
Sbjct: 240 RALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTL 299

Query: 344 AGSIQKGISFSKK 356
              I  G  F  K
Sbjct: 300 KKDIALGEEFVNK 312

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  405 bits (1043), Expect = e-142
 Identities = 192/313 (61%), Positives = 234/313 (74%), Gaps = 3/313 (0%)

Query: 45  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 104
           FKVA+LGAAGGIGQPL++L+K NP VS L LYD+V  PGV AD+SH+DT A V G+    
Sbjct: 9   FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGE 68

Query: 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 164
             E AL G DLV+I AGVPRKPGMTRDDLFN NA IVR L   +A   P A V ++SNPV
Sbjct: 69  LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128

Query: 165 NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 224
           NSTVPIAAE  KKAG YDP+KL GVT LDVVRA  FVAE LG++P DV+VPVVGGH+GVT
Sbjct: 129 NSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVT 188

Query: 225 ILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLR 284
           I+PLLSQ     S  +E+ E +T+R+Q GG EVV+AK GAGSATLSMAYAA +++ + L+
Sbjct: 189 IVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLK 246

Query: 285 GLRGDAGVVECAFVASQVT-ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 343
            LRGD G+VECAFV S +  E PFF+S V LG++G E +  +GPLN YE   LE A  +L
Sbjct: 247 ALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDL 306

Query: 344 AGSIQKGISFSKK 356
             +I+KG+ F++K
Sbjct: 307 KKNIEKGLEFARK 319

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  247 bits (632), Expect = 4e-80
 Identities = 113/319 (35%), Positives = 166/319 (52%), Gaps = 21/319 (6%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           KVA++GA G +G  LA L+ +  L S L L D+      GV  D+SH          +  
Sbjct: 2   KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
                 L G D+V+I AGVPRKPGMTR DL   NA IV+ + + IAK  P+A V +++NP
Sbjct: 61  DGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120

Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 223
           V+    IA +    +G    + +   T+LD  R  TF+AE LG+ P+DV   V+G H G 
Sbjct: 121 VDILTYIAMKF---SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-GD 176

Query: 224 TILPLLSQV----KPPCSF----TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA 275
           T++PL SQ     KP        T+E+ E L  R++N G E++EAK GAG      A A 
Sbjct: 177 TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPAAAL 234

Query: 276 VKFADACLRGLRGDAGVVECAFVASQ-VTELPFFASKVRLGRQGAEEIFQLGPLNEYERI 334
            +  +A LR  +    +    ++  +   E  +F     LG+ G EEI +L  L++ E+ 
Sbjct: 235 ARMVEAILRDEK--RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQE 291

Query: 335 GLEKAKKELAGSIQKGISF 353
            L+K+ +EL  +I+     
Sbjct: 292 KLDKSAEELKKNIELVKEL 310

Length = 313

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  185 bits (471), Expect = 6e-58
 Identities = 79/176 (44%), Positives = 103/176 (58%), Gaps = 16/176 (9%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG----------VTILPLLSQVKPPCSFT 239
           T LD  RA TF+AE  G+DPR V+V V+G H+G          VTI+PL+SQVK     T
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 240 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGD--AGVVECAF 297
             E E L  R+QN G EV+EAK  AGS T SMAYAA + A A LRG  G    GV    +
Sbjct: 61  DWELEELIERVQNAGYEVIEAK--AGSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGY 118

Query: 298 VASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
                 +  +F+  V LG+ G E++ ++ PLN++ER  LEK+  EL   I+KG +F
Sbjct: 119 Y--GSPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEIEKGFAF 172

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  174 bits (444), Expect = 2e-54
 Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQ 103
           KVA++GA GG+G  LA  + +  L   L L D+      GV  D+SH  T   V G +G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
                AL   D+V+I AGVPRKPGMTR DL N NAGI + +   IAK  P+A V ++SNP
Sbjct: 62  DD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLG 188
           V+    IA +V   +G    + +  
Sbjct: 121 VDILTYIAWKV---SGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  161 bits (409), Expect = 6e-47
 Identities = 102/323 (31%), Positives = 158/323 (48%), Gaps = 46/323 (14%)

Query: 47  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHM----DTGAVVRGF 100
           ++I+GA G +G  LA L+ +  L  V+ L D+V   P G   DIS       +   V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGT 58

Query: 101 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
                +  +    D+V+I AG+PRKPGM+RDDL   NA IV+ + E I K  PNA V ++
Sbjct: 59  NDYEDIAGS----DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           +NP++        V  KA  +   +++G+  +LD  R   F+AE LG+  +DV   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 220 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 274
           H G T++PL         P     T+EE + +  R +NGG E+V      GSA  + A A
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA 228

Query: 275 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 324
             +  +A L+           L G+ G+ +          +P     V LG+ G E+I +
Sbjct: 229 IAEMVEAILKDKKRVLPCSAYLEGEYGIKDIFV------GVP-----VVLGKNGVEKIIE 277

Query: 325 LGPLNEYERIGLEKAKKELAGSI 347
           L  L + E+   +K+ + +   I
Sbjct: 278 L-DLTDEEKEAFDKSVESVKELI 299

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  158 bits (402), Expect = 7e-46
 Identities = 102/325 (31%), Positives = 169/325 (52%), Gaps = 44/325 (13%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 103
           K++I+GA G +G  LA L+ +  L  V+ L+D+V   P G   DI+     A V GF  +
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEA---APVEGFDTK 58

Query: 104 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
               N    + G D+V+I AGVPRKPGM+RDDL  INA I++ + EGI K  P+A V ++
Sbjct: 59  ITGTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV 118

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           +NPV++   +A     K   +   +++G+  +LD  R  TF+AE L +  +DV   V+GG
Sbjct: 119 TNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGG 174

Query: 220 HAGVTILPLLSQ-----VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 274
           H G +++PL+       +      ++E+ + +  R + GG E+V      GSA  + A +
Sbjct: 175 H-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAAS 232

Query: 275 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 324
             +  +A L+           L G+ GV +          +P     V+LG+ G E+I +
Sbjct: 233 IAEMVEAILKDKKRVLPCSAYLEGEYGVKDVYV------GVP-----VKLGKNGVEKIIE 281

Query: 325 LGPLNEYERIGLEKAKKELAGSIQK 349
           L  L++ E+   +K+ + +   I+ 
Sbjct: 282 L-ELDDEEKAAFDKSVEAVKKLIEA 305

Length = 307

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  131 bits (332), Expect = 3e-36
 Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 9/192 (4%)

Query: 47  VAILGAAGGIGQPLA--MLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG 102
           +A++GA G +G  LA  +      L   L LYD+      GV  D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 103 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162
                 A    D+VII AGV RKPGM R DL   N  IV+ + + I K  P+A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 163 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 222
           PV+    I   +  +      +K++G+  LD +R    +AE LG+DP DV V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 223 VTILPLLSQVKP 234
            + +P  S V+ 
Sbjct: 177 -SQVPDWSTVRI 187

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  127 bits (320), Expect = 6e-34
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 31/305 (10%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISH-MDTGAVVRGFLG 102
           K++++GA G IG  +A+L+    L  V+ LYDV+   P G   D+ H           LG
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 103 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162
               E  +   D+V+I AGV RK  MTR+DL  IN  I++++ E + K CPNA V  ++N
Sbjct: 65  TNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123

Query: 163 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVGGHA 221
           P++       +VF++       K+ G+  +LD  R    +AE LG+ P DV   V+GGH 
Sbjct: 124 PLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH- 178

Query: 222 GVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 271
           G  ++PL         P   F      T++E   +  + +N G E+V+     GSA  + 
Sbjct: 179 GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAP 237

Query: 272 AYAAVKFADACLRGLRGDAGVVECAFVAS---QVTELPFFASKVRLGRQGAEEIFQLGPL 328
           A A V   +A L+  +    V+ C+   +       L F    V +G +G E++ +L  L
Sbjct: 238 AAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNL-FVGVPVVIGGKGIEKVIEL-EL 292

Query: 329 NEYER 333
           N  E+
Sbjct: 293 NAEEK 297

Length = 319

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  121 bits (306), Expect = 7e-32
 Identities = 105/319 (32%), Positives = 172/319 (53%), Gaps = 36/319 (11%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVR-GFLG 102
           K++++G+ G IG  +A L+ +  L  V+ L+D+V N P G   DISH +  A      +G
Sbjct: 8   KISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIG 65

Query: 103 QPQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATV 157
               E+ + G D+VI+ AG+ ++PG +     RDDL  +NA I+  + EGI K CPNA V
Sbjct: 66  TNNYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFV 124

Query: 158 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPV 216
            +I+NP++  V    ++ ++       K+ G+  +LD  R  T++AE LG++PRDV   V
Sbjct: 125 IVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV 180

Query: 217 VGGHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVEAKAGAGS 266
           +G H G  ++PL   V     P   F      TQEE + +  R +N G E+V+   G GS
Sbjct: 181 IGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL-LGTGS 238

Query: 267 ATLSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQ--VTELPFFASKVRLGRQGAEEIF 323
           A  + A AA++ A+A L+  +    V+ C A++  Q    ++ +  +   +G  G E+I 
Sbjct: 239 AYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDI-YMGTPAVIGANGVEKII 294

Query: 324 QLGPLNEYERIGLEKAKKE 342
           +L  L   E+   +++ KE
Sbjct: 295 EL-DLTPEEQKKFDESIKE 312

Length = 321

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  120 bits (303), Expect = 1e-31
 Identities = 89/318 (27%), Positives = 140/318 (44%), Gaps = 44/318 (13%)

Query: 47  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRGF 100
           + I+GA G +G  +A  +    L S L L DV      G   D+SH      TG +VRG 
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG- 58

Query: 101 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
                        D+V+I AG PRKPG TR DL N NA I+R++   + K  P+A + ++
Sbjct: 59  ----GDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVV 114

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           SNPV+    I   V +K       +++G  T+LD  R  + +AE L +DP+ V   V+G 
Sbjct: 115 SNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGE 170

Query: 220 HAGVTILPLLSQVK-------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGA----GSAT 268
           H G + +   S              FT+ + E +   ++  G E++  K        +A 
Sbjct: 171 H-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAI 229

Query: 269 LSMAYAAVKFADACL---RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 325
             +  + +      L       G  G+ + A        +P       +GR+G   I ++
Sbjct: 230 ADIVKSILLDERRVLPVSAVQEGQYGIEDVAL------SVP-----AVVGREGVVRILEI 278

Query: 326 GPLNEYERIGLEKAKKEL 343
            PL E E   L+K+ + L
Sbjct: 279 -PLTEDEEAKLQKSAEAL 295

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  109 bits (273), Expect = 2e-27
 Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 36/313 (11%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----L 101
           K++++GA G +G   A  +    L  ++ L DVV        +   +   V  GF     
Sbjct: 3   KISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPV-GGFDTKVT 59

Query: 102 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161
           G     +     D+V+I AG+PRKPGM+R+DL ++NAGIVR +   I +  PN  + ++S
Sbjct: 60  GTNNYADT-ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118

Query: 162 NPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVGGH 220
           NP+++   +A +       +  ++++G   +LD  R  TF+A  LG+  +DV   V+GGH
Sbjct: 119 NPLDAMTYVAWQK----SGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGH 174

Query: 221 AGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 270
            G  ++PL          ++ +        E    +  R + GG E+V      GSA  +
Sbjct: 175 -GDAMVPLVRYSTVAGIPVADLISA-----ERIAEIVERTRKGGGEIVNL-LKQGSAYYA 227

Query: 271 MAYAAVKFADACLRGLRGDAGVVEC-AFVASQV-TELPFFASKVRLGRQGAEEIFQLGPL 328
            A + V+  +A L+  +    V+ C A++  Q   +  +    V LG+ G E I++L  L
Sbjct: 228 PAASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KL 283

Query: 329 NEYERIGLEKAKK 341
           ++ E   L K+ K
Sbjct: 284 DQSELALLNKSAK 296

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score = 98.6 bits (246), Expect = 2e-23
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 43/243 (17%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHL-----------------YDVVNTPGVTADI 88
           KV+I+GA+G +G   A+L+    +V  ++L                 YD +   G+ A+I
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 89  SHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI 148
                 + V              G D+VII AGVPRK GM+R DL   NA IV+   + I
Sbjct: 62  KISSDLSDV-------------AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 149 AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGL 207
           A+  P+  + +++NPV+     A    K++G +D  ++ G+ T LD +R    +A+   +
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 208 DPRDVDVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEA 260
              +V   ++G H G +++PL+S        +K    +   + E +   ++N G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 261 KAG 263
           K G
Sbjct: 224 KGG 226

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 95.0 bits (237), Expect = 2e-22
 Identities = 64/248 (25%), Positives = 111/248 (44%), Gaps = 26/248 (10%)

Query: 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 169
               DLV+I AG P+KPG TR +L   N  I++++   + K   +    + +NPV+    
Sbjct: 62  CKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---- 117

Query: 170 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPL 228
           I   V  K   +   +++G  T+LD  R    +AE LG+DP+ V   ++G H G + +P+
Sbjct: 118 ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEH-GDSEVPV 176

Query: 229 LSQVK----PPCSF---TQEETEYLTNRI----QNGGTEVVEAKAGAGSATLSMAYAAVK 277
            S       P   +      ET+     I    ++   E++  K   G+    +  A  +
Sbjct: 177 WSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIGMAVAR 233

Query: 278 FADACLRGLRGDAGVVEC-AFVASQVTELPFFASKVR-LGRQGAEEIFQLGPLNEYERIG 335
             +A L        V+   A++  +      +      LGR G EEI +L PL++ E+  
Sbjct: 234 IVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEA 289

Query: 336 LEKAKKEL 343
            +K+ + L
Sbjct: 290 FQKSAETL 297

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 90.6 bits (226), Expect = 1e-20
 Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 41/258 (15%)

Query: 113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 172
            D+V+I AG P+KPG TR DL   NA I++++   I     +    + SNPV+    +  
Sbjct: 69  ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VIT 124

Query: 173 EVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH--------AGV 223
            V +K       +++G  T LD  R    +AE L +DPR V   V+G H        + V
Sbjct: 125 YVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGDSQFVAWSTV 184

Query: 224 TIL--PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 281
           T+   PLL  +K     ++ + + +   ++  G E++  K   G+    +A A  +   A
Sbjct: 185 TVGGKPLLDLLKEGK-LSELDLDEIEEDVRKAGYEIINGK---GATYYGIATALARIVKA 240

Query: 282 CLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEY 331
            L            L G+ G  +            +      +GR G EE+ +L  L E 
Sbjct: 241 ILNDENAILPVSAYLDGEYGEKDV-----------YIGVPAIIGRNGVEEVIEL-DLTEE 288

Query: 332 ERIGLEKAKKELAGSIQK 349
           E+   EK+   +  +I+K
Sbjct: 289 EQEKFEKSADIIKENIKK 306

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 83.1 bits (206), Expect = 6e-18
 Identities = 72/262 (27%), Positives = 104/262 (39%), Gaps = 48/262 (18%)

Query: 46  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-- 96
            V I GAAG IG  L        +     P++  LHL D+         +  ++   +  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI------PPAMKALEGVVMEL 53

Query: 97  -------VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA 149
                  ++G +     E A   +D+ I+    PRKPGM R DL   NA I +   E + 
Sbjct: 54  QDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALN 113

Query: 150 KCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLD 208
           K   P   V ++ NP N+   IA    K A    PK    +T LD  RA   VA  LG+ 
Sbjct: 114 KVAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVR 170

Query: 209 PRDV-DVPVVGGHAGVTILPLLSQ-------------VKPPCSFTQEETEYLTNRIQNGG 254
             DV +V + G H+  T +P LS                    +  +E       +Q  G
Sbjct: 171 VSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDE---FVKTVQKRG 226

Query: 255 TEVVEAKAGAGSATLSMAYAAV 276
             +++ + GA SA  S A A  
Sbjct: 227 AAIIKKR-GASSA-ASAAKAIA 246

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 82.5 bits (205), Expect = 8e-18
 Identities = 92/330 (27%), Positives = 142/330 (43%), Gaps = 52/330 (15%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISH-MDTGAVVRGFL 101
           KVAI+GA G +G   A  + +  L S + L D+ N         D++H       VR + 
Sbjct: 2   KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDI-NKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 102 GQPQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
           G     + A    D+V+I AG  +KPG TR DL   N  I + +   I K  P+A + ++
Sbjct: 60  GDYADCKGA----DVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           +NPV+    +   V  K     P +++G  T+LD  R    + E LG+DPR V   ++G 
Sbjct: 116 TNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGE 171

Query: 220 H-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA-- 264
           H              GV +         P  F +E  E +   ++N   E++E K GA  
Sbjct: 172 HGDSEVAVWSSANIGGVPLDEFCKLCGRP--FDEEVREEIFEEVRNAAYEIIERK-GATY 228

Query: 265 ---GSATLSMAYAAVKFADACL---RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQG 318
              G A   +  A ++  ++ L     L G  G+ + A        LP     V  GR G
Sbjct: 229 YAIGLALARIVEAILRDENSVLTVSSLLDGQYGIKDVAL------SLP---CIV--GRSG 277

Query: 319 AEEIFQLGPLNEYERIGLEKAKKELAGSIQ 348
            E +    PL+E E   L  + + L  +I+
Sbjct: 278 VERVLPP-PLSEEEEEALRASAEVLKEAIE 306

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 77.4 bits (191), Expect = 5e-16
 Identities = 90/324 (27%), Positives = 137/324 (42%), Gaps = 38/324 (11%)

Query: 46  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 94
           +VA+ GAAG IG  L        +  K  P+V  LHL D+        GV  ++   D  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGVAMEL--EDCA 60

Query: 95  -AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 152
             ++ G +     E A   +D  ++    PRKPGM R DL + N  I +   + + K   
Sbjct: 61  FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120

Query: 153 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 212
            +  V ++ NP N+   IA+   K A    PK    +T LD  RA   +A   G+   DV
Sbjct: 121 KDVKVLVVGNPANTNALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDV 177

Query: 213 -DVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYLTN----RIQNGGTEVVEAKAGA 264
            +V + G H+  T +P  +       P     ++ ++L       +Q  G  V+EA+ GA
Sbjct: 178 KNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR-GA 235

Query: 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ-----VTELPFFASKVRLGRQGA 319
            SA  S A AA+      + G     G      V S      + E   F+  V     G 
Sbjct: 236 SSA-ASAANAAIDHVRDWVTGTP--EGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGE 292

Query: 320 EEIFQLGPLNEYERIGLEKAKKEL 343
            EI +  PL+++ R  L+  + EL
Sbjct: 293 WEIVEGLPLDDFVRGKLDATEDEL 316

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 73.9 bits (182), Expect = 6e-15
 Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 31/193 (16%)

Query: 109 ALTGMDLVIIPAGVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 166
                D+++I AG    PG T  R DL   NA I+R +   I K    A + LI+NP++ 
Sbjct: 65  DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDI 124

Query: 167 TVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 225
            V IAA  F     Y   K++G  TMLD  R    VA+  G+DP++V   V+G H G   
Sbjct: 125 AVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSHA 179

Query: 226 LPLLSQV---------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 270
            P+ S V               K P        + L   +     +V   K G  +A ++
Sbjct: 180 FPVWSLVNIAGLPLDELEALFGKEPID-----KDELLEEVVQAAYDVFNRK-GWTNAGIA 233

Query: 271 MAYAAVKFADACL 283
              +A +   A L
Sbjct: 234 K--SASRLIKAIL 244

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 70.7 bits (174), Expect = 8e-14
 Identities = 82/337 (24%), Positives = 135/337 (40%), Gaps = 57/337 (16%)

Query: 44  GFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF 100
             KV ++G    G+   +++L K   L   L L DVV     G   D+ H   G+    F
Sbjct: 3   RNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH---GSA---F 54

Query: 101 LGQPQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 155
           L  P++E     +      +VI+ AG  +  G +R DL   N  I + +   + K  PNA
Sbjct: 55  LKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNA 114

Query: 156 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 214
            + ++SNPV+    I   V  K       +++G    LD  R    +AE LG+ P  V  
Sbjct: 115 ILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHG 170

Query: 215 PVVGGH--------AGVTI--LPLLSQVKPPCSFTQEETEY-LTNRIQNGGTEVVEAKAG 263
            ++G H        +GV +  + L        +    E    +  ++ +   EV++ K  
Sbjct: 171 WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK-- 228

Query: 264 AGSATLSMAYAAVKFADACLRGLR----------GDAGVVECAFVASQVTELPFFASKVR 313
            G  + ++  +     DA LR             G  G+ +  F++     LP       
Sbjct: 229 -GYTSWAIGLSVADLVDAILRNTGRVHSVSTLVKGLHGIEDEVFLS-----LP-----CI 277

Query: 314 LGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG 350
           LG  G   + +  PL E E+  L+K+   L   +QK 
Sbjct: 278 LGENGITHVIKQ-PLTEEEQEKLQKSADTLW-EVQKQ 312

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 69/254 (27%), Positives = 104/254 (40%), Gaps = 31/254 (12%)

Query: 46  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISH--MDTG-A 95
           +V + GAAG IG  L        ML K  P++  LHL D+     V   +    MD    
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGVVMELMDCAFP 58

Query: 96  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPN 154
           ++ G +       A T +D+ I+    PRK GM R DL + N  I +     + K    +
Sbjct: 59  LLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKD 118

Query: 155 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-D 213
             V ++ NP N+   + +     A +  PK    +T LD  RA   VAE  G+   DV +
Sbjct: 119 CKVLVVGNPANTNALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKN 175

Query: 214 VPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR-----------IQNGGTEVVEAKA 262
           V + G H+  T  P ++         Q+                   +Q  G  ++ A+ 
Sbjct: 176 VIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233

Query: 263 GAGSATLSMAYAAV 276
              S+ LS A AAV
Sbjct: 234 -KLSSALSAAKAAV 246

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 68.0 bits (167), Expect = 7e-13
 Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 36/251 (14%)

Query: 112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA 171
             DLV+I AG P+KPG TR DL   N  I +++   +     +    + SNPV+    I 
Sbjct: 73  DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----IL 128

Query: 172 AEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH---------- 220
                K   +  ++++G  T LD  R    ++E L +DPR V   ++G H          
Sbjct: 129 TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSH 188

Query: 221 AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA- 279
           A V  +PL   ++    + +E+ + +   +++   E++E K GA    ++MA A +  A 
Sbjct: 189 ANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK-GATYYGIAMALARITKAI 247

Query: 280 ----DACL---RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 332
               +A L     L G  G  +            +      + R G  EI +L PLN+ E
Sbjct: 248 LNNENAVLPVSAYLEGQYGEEDV-----------YIGVPAVVNRNGIREIVEL-PLNDDE 295

Query: 333 RIGLEKAKKEL 343
           +     +   L
Sbjct: 296 KQKFAHSADVL 306

Length = 315

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 82/326 (25%), Positives = 140/326 (42%), Gaps = 39/326 (11%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQ 103
           KV+++G  G +G  +A  +    L   L L DV      G   D+ H         FL +
Sbjct: 39  KVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH------AAAFLPR 91

Query: 104 PQL----ENALT-GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
            ++    + A+T G DL I+ AG  + PG +R +L   N  + R +   +AK  P+  + 
Sbjct: 92  TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151

Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 217
           ++SNPV+    +A   +K +G +   +++G  T LD  R    +A+ L ++ +DV   +V
Sbjct: 152 IVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIV 207

Query: 218 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 264
           G H              GV +L  L   K   ++ +E  E +   + +   EV++ K   
Sbjct: 208 GEHGDSSVALWSSVSVGGVPVLSFLE--KQQIAYEKETLEEIHRAVVDSAYEVIKLK--- 262

Query: 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFAS-KVRLGRQGAEEIF 323
           G  + ++ Y+      + LR  R    V   A     + E   F S   +LGR G   + 
Sbjct: 263 GYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVV 322

Query: 324 QLGPLNEYERIGLEKAKKELAGSIQK 349
            +  L + E   L K+ K L     +
Sbjct: 323 NV-HLTDEEAERLRKSAKTLWEVQSQ 347

Length = 350

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 64/255 (25%), Positives = 105/255 (41%), Gaps = 33/255 (12%)

Query: 46  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADIS-HMDTGA-- 95
           +V + GAAG I   L        +     P++  LHL D+         +   +   A  
Sbjct: 4   RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI--LHLLDIPPALKALEGVVMELQDCAFP 61

Query: 96  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PN 154
           +++  +     E A   +D+ I+   +PRK GM R DL   N  I +   E + K    N
Sbjct: 62  LLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKN 121

Query: 155 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-D 213
             V ++ NP N+   I     K A +   +    +T LD  RA + +A  LG+   DV +
Sbjct: 122 VKVLVVGNPANTNALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKN 178

Query: 214 VPVVGGHAGVTILPLLSQ--------VKPPCSFTQEETEYLTN----RIQNGGTEVVEAK 261
           V + G H+  T  P ++          KP     +++  +L       +Q  G  V++A+
Sbjct: 179 VIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDD-AWLNGEFISTVQKRGAAVIKAR 236

Query: 262 AGAGSATLSMAYAAV 276
               SA +S A A  
Sbjct: 237 -KLSSA-MSAAKAIC 249

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 4/135 (2%)

Query: 99  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATV 157
           G +   +LE A   +D   + A VP KPG  R DL   N  I +   E +++   P   V
Sbjct: 47  GTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKV 106

Query: 158 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 217
            +I NPVN+   +A      A     +    + MLD  RA + +A  L +    +   VV
Sbjct: 107 LVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVV 163

Query: 218 GGHAGVTILPLLSQV 232
            G+   +++  L+  
Sbjct: 164 WGNHAESMVADLTHA 178

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)

Query: 51  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTG-AVVRGFLGQPQLEN 108
           G   G  QP+ + ++ I P    L+        GV  ++  +D    +++G +    +  
Sbjct: 5   GVMLGPDQPVILHMLDIPPAAEALN--------GVKMEL--IDAAFPLLKGVVATTDVVE 54

Query: 109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 167
           A  G+++ ++  G PRK GM R D+ + N  I ++    + K   P+  V +++NP N+ 
Sbjct: 55  ACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTN 114

Query: 168 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHA 221
             I  E    A +   K +  +T LD  RA   ++E LG+   DV +V + G H+
Sbjct: 115 ALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHS 166

Length = 309

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 31/252 (12%)

Query: 46  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 94
           +VA+ GAAG IG  L        M     P++  L L ++        GV  ++   +  
Sbjct: 4   RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMEL---EDC 58

Query: 95  A--VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C 151
           A  ++   +       A    D  ++    PR PGM R DL   N  I     + +    
Sbjct: 59  AFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVA 118

Query: 152 CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRD 211
             +  V ++ NP N+   IA    K A    P     +T LD  RA + +A+  G+   D
Sbjct: 119 SRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTD 175

Query: 212 VDVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYLTN----RIQNGGTEVVEAKAGA 264
           V   V+ G+   T  P  +       P +    +  +L +     +Q  G  +++A+ GA
Sbjct: 176 VKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR-GA 234

Query: 265 GSATLSMAYAAV 276
            SA  S A AA+
Sbjct: 235 SSAA-SAANAAI 245

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 68/253 (26%), Positives = 107/253 (42%), Gaps = 33/253 (13%)

Query: 46  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTGA 95
           +VA+ GAAG IG  L        ML K  P++  L L ++   P + A    +  +D  A
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVI--LQLLEI--PPALKALEGVVMELDDCA 61

Query: 96  --VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 152
             ++ G +       A    D+ ++    PR PGM R DL   N  I     + + +   
Sbjct: 62  FPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAA 121

Query: 153 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 212
            +  V ++ NP N+   IA    K A     +    +T LD  RA + +A   G+   D+
Sbjct: 122 RDVKVLVVGNPANTNALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADI 178

Query: 213 -DVPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN----RIQNGGTEVVEAKAG 263
             + V G H+  T  P         KP      ++  +L +     +Q  G  ++EA+ G
Sbjct: 179 KKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQ-AWLEDTFIPTVQKRGAAIIEAR-G 235

Query: 264 AGSATLSMAYAAV 276
           A SA  S A AA+
Sbjct: 236 ASSAA-SAANAAI 247

Length = 326

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 123 PRKPGMTRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 178
           PR PGM R DL +IN  I     + L E +A    N  V ++ NP N+   I     K A
Sbjct: 187 PRGPGMERADLLDINGQIFAEQGKALNE-VAS--RNVKVIVVGNPCNTNALIC---LKNA 240

Query: 179 GTYDPKKLLGVTMLDVVRA 197
                K    +T LD  RA
Sbjct: 241 PNIPAKNFHALTRLDENRA 259

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
PLN00106	323	malate dehydrogenase	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
PLN02602	350	lactate dehydrogenase	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
PLN00135	309	malate dehydrogenase	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	100.0
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
PRK15076	431	alpha-galactosidase; Provisional	100.0
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	100.0
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.97
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.96
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.96
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.87
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.86
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.75
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.72
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.57
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.54
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.51
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.5
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.48
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.48
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.47
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.46
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.44
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.4
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.37
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.34
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.33
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.32
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.32
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.29
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.26
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.24
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.21
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.17
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.17
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.15
PLN02427	386	UDP-apiose/xylose synthase	98.15
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.14
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.14
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.06
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.05
PLN00198	338	anthocyanidin reductase; Provisional	98.05
PLN02650	351	dihydroflavonol-4-reductase	98.04
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.04
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.02
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.01
PLN02206	442	UDP-glucuronate decarboxylase	98.01
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	97.98
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	97.98
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.97
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	97.93
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.91
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.9
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.87
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	97.85
CHL00194	317	ycf39 Ycf39; Provisional	97.81
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	97.8
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.79
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.79
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	97.79
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.78
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.75
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.74
PLN02214	342	cinnamoyl-CoA reductase	97.73
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	97.71
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.71
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	97.71
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.7
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.67
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	97.67
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.66
PLN02695	370	GDP-D-mannose-3',5'-epimerase	97.64
PRK06194	287	hypothetical protein; Provisional	97.63
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.63
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.62
PLN02778	298	3,5-epimerase/4-reductase	97.62
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.61
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.6
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	97.59
PRK10675	338	UDP-galactose-4-epimerase; Provisional	97.59
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	97.58
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	97.58
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.58
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	97.57
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.55
PLN03209	576	translocon at the inner envelope of chloroplast su	97.55
PLN02260	668	probable rhamnose biosynthetic enzyme	97.55
PLN02583	297	cinnamoyl-CoA reductase	97.51
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.51
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.5
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	97.49
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.49
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	97.46
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	97.46
PLN02572	442	UDP-sulfoquinovose synthase	97.45
PLN02653	340	GDP-mannose 4,6-dehydratase	97.43
PF11975	232	Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term	97.35
PRK07417	279	arogenate dehydrogenase; Reviewed	97.3
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.3
PRK14982	340	acyl-ACP reductase; Provisional	97.3
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.29
PLN02253	280	xanthoxin dehydrogenase	97.28
PRK07680	273	late competence protein ComER; Validated	97.23
PLN02240	352	UDP-glucose 4-epimerase	97.22
PRK05865	854	hypothetical protein; Provisional	97.21
PRK08267	260	short chain dehydrogenase; Provisional	97.2
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	97.2
PRK07201	657	short chain dehydrogenase; Provisional	97.2
PRK07102	243	short chain dehydrogenase; Provisional	97.18
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	97.17
PRK08643	256	acetoin reductase; Validated	97.16
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.14
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.14
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.12
PRK08655	437	prephenate dehydrogenase; Provisional	97.11
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.11
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.11
PRK12829	264	short chain dehydrogenase; Provisional	97.11
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.11
PLN02688	266	pyrroline-5-carboxylate reductase	97.1
PRK05717	255	oxidoreductase; Validated	97.1
PRK12320	699	hypothetical protein; Provisional	97.09
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.09
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	97.09
PLN02686	367	cinnamoyl-CoA reductase	97.09
PRK07067	257	sorbitol dehydrogenase; Provisional	97.08
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.08
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.08
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.08
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.08
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.05
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.04
PRK07326	237	short chain dehydrogenase; Provisional	97.04
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.03
PRK10538	248	malonic semialdehyde reductase; Provisional	97.03
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.03
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.01
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.0
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.99
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.99
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.98
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.97
PRK06172	253	short chain dehydrogenase; Provisional	96.96
PRK12937	245	short chain dehydrogenase; Provisional	96.95
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.94
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.94
PRK06914	280	short chain dehydrogenase; Provisional	96.92
PRK07814	263	short chain dehydrogenase; Provisional	96.91
PRK07806	248	short chain dehydrogenase; Provisional	96.91
PRK07069	251	short chain dehydrogenase; Validated	96.91
PRK08278	273	short chain dehydrogenase; Provisional	96.9
PRK06482	276	short chain dehydrogenase; Provisional	96.9
PRK06924	251	short chain dehydrogenase; Provisional	96.9
PRK05875	276	short chain dehydrogenase; Provisional	96.89
PRK08265	261	short chain dehydrogenase; Provisional	96.89
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.88
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	96.86
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	96.86
PRK06545	359	prephenate dehydrogenase; Validated	96.86
PRK09135	249	pteridine reductase; Provisional	96.86
PRK12480	330	D-lactate dehydrogenase; Provisional	96.86
PRK12828	239	short chain dehydrogenase; Provisional	96.85
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.85
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.84
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.84
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.83
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.83
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.82
PRK05876	275	short chain dehydrogenase; Provisional	96.82
PRK12827	249	short chain dehydrogenase; Provisional	96.82
PRK07832	272	short chain dehydrogenase; Provisional	96.82
PRK07576	264	short chain dehydrogenase; Provisional	96.79
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.78
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.78
PRK06180	277	short chain dehydrogenase; Provisional	96.77
PRK07063	260	short chain dehydrogenase; Provisional	96.77
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.76
PRK05866	293	short chain dehydrogenase; Provisional	96.75
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.73
PRK06138	252	short chain dehydrogenase; Provisional	96.72
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.7
PRK08507	275	prephenate dehydrogenase; Validated	96.7
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	96.7
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.7
PRK12939	250	short chain dehydrogenase; Provisional	96.69
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.69
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.68
PRK06701	290	short chain dehydrogenase; Provisional	96.68
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	96.68
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.67
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	96.67
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.66
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.66
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.65
PRK08589	272	short chain dehydrogenase; Validated	96.64
PRK07024	257	short chain dehydrogenase; Provisional	96.64
PRK07890	258	short chain dehydrogenase; Provisional	96.64
COG2910	211	Putative NADH-flavin reductase [General function p	96.63
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.62
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.62
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.62
PRK07774	250	short chain dehydrogenase; Provisional	96.62
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.62
PRK06181	263	short chain dehydrogenase; Provisional	96.62
PRK05855	582	short chain dehydrogenase; Validated	96.61
PLN02256	304	arogenate dehydrogenase	96.6
PRK06500	249	short chain dehydrogenase; Provisional	96.6
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.6
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.59
PRK06179	270	short chain dehydrogenase; Provisional	96.58
PRK07856	252	short chain dehydrogenase; Provisional	96.57
PTZ00431	260	pyrroline carboxylate reductase; Provisional	96.57
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.57
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.56
PRK06841	255	short chain dehydrogenase; Provisional	96.56
PLN02996	491	fatty acyl-CoA reductase	96.53
PRK06128	300	oxidoreductase; Provisional	96.51
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.51
TIGR01746	367	Thioester-redct thioester reductase domain. It has	96.49
PRK07985	294	oxidoreductase; Provisional	96.49
PRK09242	257	tropinone reductase; Provisional	96.47
PRK08251	248	short chain dehydrogenase; Provisional	96.47
PRK12746	254	short chain dehydrogenase; Provisional	96.46
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.46
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	96.46
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.46
PRK09186	256	flagellin modification protein A; Provisional	96.43
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.43
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.42
PRK06182	273	short chain dehydrogenase; Validated	96.42
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.42
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.42
PRK08818	370	prephenate dehydrogenase; Provisional	96.41
PRK06101	240	short chain dehydrogenase; Provisional	96.41
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.41
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.4
PRK06523	260	short chain dehydrogenase; Provisional	96.4
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.4
PRK09009	235	C factor cell-cell signaling protein; Provisional	96.38
PRK05884	223	short chain dehydrogenase; Provisional	96.38
PRK12742	237	oxidoreductase; Provisional	96.37
PRK08339	263	short chain dehydrogenase; Provisional	96.36
PRK05854	313	short chain dehydrogenase; Provisional	96.36
PLN02780	320	ketoreductase/ oxidoreductase	96.34
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.33
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.33
PRK07825	273	short chain dehydrogenase; Provisional	96.33
PRK06949	258	short chain dehydrogenase; Provisional	96.32
PRK13243	333	glyoxylate reductase; Reviewed	96.32
PLN02260	668	probable rhamnose biosynthetic enzyme	96.31
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.31
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.31
PRK08226	263	short chain dehydrogenase; Provisional	96.3
PRK05650	270	short chain dehydrogenase; Provisional	96.3
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.3
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.29
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.29
PRK09072	263	short chain dehydrogenase; Provisional	96.29
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.29
PRK08628	258	short chain dehydrogenase; Provisional	96.26
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.26
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.26
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.26
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.26
PRK12747	252	short chain dehydrogenase; Provisional	96.24
PRK07574	385	formate dehydrogenase; Provisional	96.24
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.23
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.23
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.22
PRK12367	245	short chain dehydrogenase; Provisional	96.22
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.22
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.21
PRK07478	254	short chain dehydrogenase; Provisional	96.21
PRK09291	257	short chain dehydrogenase; Provisional	96.2
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.2
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.19
PRK08264	238	short chain dehydrogenase; Validated	96.19
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.18
PRK07831	262	short chain dehydrogenase; Provisional	96.18
PLN02712	667	arogenate dehydrogenase	96.18
PRK07074	257	short chain dehydrogenase; Provisional	96.15
PRK08703	239	short chain dehydrogenase; Provisional	96.15
PRK07035	252	short chain dehydrogenase; Provisional	96.15
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.15
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.15
PRK12744	257	short chain dehydrogenase; Provisional	96.14
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.14
PRK06057	255	short chain dehydrogenase; Provisional	96.13
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.13
PRK06398	258	aldose dehydrogenase; Validated	96.12
PRK06198	260	short chain dehydrogenase; Provisional	96.11
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.1
PRK06197	306	short chain dehydrogenase; Provisional	96.1
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.08
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.08
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.06
PRK07060	245	short chain dehydrogenase; Provisional	96.06
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.06
PRK08219	227	short chain dehydrogenase; Provisional	96.05
PRK08605	332	D-lactate dehydrogenase; Validated	96.05
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.05
PRK07109	334	short chain dehydrogenase; Provisional	96.04
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.04
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.03
PRK08291	330	ectoine utilization protein EutC; Validated	96.03
PRK06196	315	oxidoreductase; Provisional	96.02
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.02
PLN03139	386	formate dehydrogenase; Provisional	96.01
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.01
PRK06139	330	short chain dehydrogenase; Provisional	96.01
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.01
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.0
PRK08263	275	short chain dehydrogenase; Provisional	96.0
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.0
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	95.98
PRK05867	253	short chain dehydrogenase; Provisional	95.98
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.98
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	95.96
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	95.95
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.95
PRK12743	256	oxidoreductase; Provisional	95.94
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.93
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.93
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.93
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	95.93
PRK07454	241	short chain dehydrogenase; Provisional	95.93
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.92
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.92
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.91
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.89
PRK08618	325	ornithine cyclodeaminase; Validated	95.87
PRK08177	225	short chain dehydrogenase; Provisional	95.86
PRK07023	243	short chain dehydrogenase; Provisional	95.85
PRK06947	248	glucose-1-dehydrogenase; Provisional	95.85
PRK05693	274	short chain dehydrogenase; Provisional	95.85
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.82
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.79
PRK05993	277	short chain dehydrogenase; Provisional	95.78
PRK05599	246	hypothetical protein; Provisional	95.77
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.76
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	95.76
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	95.75
PRK12824	245	acetoacetyl-CoA reductase; Provisional	95.75
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	95.75
PLN02928	347	oxidoreductase family protein	95.75
PRK07904	253	short chain dehydrogenase; Provisional	95.75
PRK09134	258	short chain dehydrogenase; Provisional	95.72
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.72
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.71
PLN00016	378	RNA-binding protein; Provisional	95.7
PRK06407	301	ornithine cyclodeaminase; Provisional	95.69
PRK07340	304	ornithine cyclodeaminase; Validated	95.67
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.66
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.65
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.63
PRK07677	252	short chain dehydrogenase; Provisional	95.63
PRK07201	657	short chain dehydrogenase; Provisional	95.63
PLN02712	667	arogenate dehydrogenase	95.62
PRK08223	287	hypothetical protein; Validated	95.62
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.61
PRK07577	234	short chain dehydrogenase; Provisional	95.6
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.6
PRK05872	296	short chain dehydrogenase; Provisional	95.59
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.59
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.57
PRK07062	265	short chain dehydrogenase; Provisional	95.57
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.57
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.57
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.56
PRK06141	314	ornithine cyclodeaminase; Validated	95.55
PRK08324	681	short chain dehydrogenase; Validated	95.54
PRK06114	254	short chain dehydrogenase; Provisional	95.54
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.53
PRK06123	248	short chain dehydrogenase; Provisional	95.53
PRK07775	274	short chain dehydrogenase; Provisional	95.53
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	95.52
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.49
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.47
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	95.45
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.42
PRK07411	390	hypothetical protein; Validated	95.42
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.42
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.35
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.32
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.31
PRK07578	199	short chain dehydrogenase; Provisional	95.29
PRK12938	246	acetyacetyl-CoA reductase; Provisional	95.26
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.24
PRK07589	346	ornithine cyclodeaminase; Validated	95.21
PRK06940	275	short chain dehydrogenase; Provisional	95.21
PRK06484	520	short chain dehydrogenase; Validated	95.21
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	95.2
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.2
PRK06125	259	short chain dehydrogenase; Provisional	95.2
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.18
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	95.14
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	95.14
PRK06484	520	short chain dehydrogenase; Validated	95.1
PRK06823	315	ornithine cyclodeaminase; Validated	95.08
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.08
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.07
PRK06953	222	short chain dehydrogenase; Provisional	95.06
PRK09496	453	trkA potassium transporter peripheral membrane com	95.06
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.03
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.03
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.02
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.02
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.02
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.01
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.01
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.98
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.94
PLN02503	605	fatty acyl-CoA reductase 2	94.93
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	94.93
PRK06483	236	dihydromonapterin reductase; Provisional	94.91
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	94.91
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	94.89
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	94.88
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	94.88
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	94.87
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.81
PLN02494	477	adenosylhomocysteinase	94.77
PRK13529	563	malate dehydrogenase; Provisional	94.73
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	94.72
PRK06199	379	ornithine cyclodeaminase; Validated	94.71
PLN02383	344	aspartate semialdehyde dehydrogenase	94.71
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	94.7
PRK06046	326	alanine dehydrogenase; Validated	94.69
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	94.65
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	94.64
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	94.61
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	94.59
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	94.56
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	94.55
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.52
PRK08862	227	short chain dehydrogenase; Provisional	94.51
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.47
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	94.45
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.42
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	94.41
PRK07877	722	hypothetical protein; Provisional	94.41
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.4
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.39
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.39
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.38
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.38
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	94.36
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	94.28
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	94.28
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.28
PRK06436	303	glycerate dehydrogenase; Provisional	94.28
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.25
PRK14851	679	hypothetical protein; Provisional	94.25
PLN03129	581	NADP-dependent malic enzyme; Provisional	94.25
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	94.25
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	94.24
PRK07041	230	short chain dehydrogenase; Provisional	94.23
PRK13940	414	glutamyl-tRNA reductase; Provisional	94.23
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	94.22
PLN00203	519	glutamyl-tRNA reductase	94.2
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.18
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	94.17
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.16
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.15
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.11
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	94.07
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.06

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=2.2e-69  Score=515.68  Aligned_cols=309  Identities=68%  Similarity=1.075  Sum_probs=280.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||+||||+|+||+++|+.|+.+++++||+|+|++.++|+++||+|+.....++...+++|++++++|||+||+++|.|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999999899999999999999999999999998679999999999744456543234566799999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHH
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  204 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~  204 (356)
                      +||++|+|++..|+++++++++.|.+++|++|+|++|||+|++|+++++++++.+++|++||||+|.||++|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             hCCCCCCCcccEEecc-cCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHH
Q 018433          205 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL  283 (356)
Q Consensus       205 l~v~~~~v~~~viG~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~  283 (356)
                      +|+++++|+++||||| |+ ++||+||++.+..+++++++++|.++++++|++|++.|.|||+|+||+|.++++++++|+
T Consensus       161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl  239 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL  239 (310)
T ss_pred             hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 78 999999999875456666689999999999999999766789999999999999999999


Q ss_pred             cCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018433          284 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFS  354 (356)
Q Consensus       284 ~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~  354 (356)
                      +|+++++.++++++++|+-.+|+|+|+||++|++|+++++++++|+++|+++|++|++.|++.+++|+.|+
T Consensus       240 ~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~  310 (310)
T cd01337         240 RGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV  310 (310)
T ss_pred             HhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            88655555778887766535799999999999999999999525999999999999999999999999874

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=4.2e-69  Score=514.62  Aligned_cols=310  Identities=59%  Similarity=0.952  Sum_probs=281.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK  125 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~  125 (356)
                      ||+||||+|+||+++|+.|+.+++++||+|+|++++.|+++||+|......+..+.+.+|++++++|||+||+++|.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999999999999999999999999999999988889999999986433454322223456899999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHh
Q 018433          126 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL  205 (356)
Q Consensus       126 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l  205 (356)
                      +|++|+|++..|.+++++++++|.+++|++++|++|||+|++++++++++++.+|||++||||+|.||++||++++|+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999889999999999999999997799999999999999


Q ss_pred             CCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHHcC
Q 018433          206 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG  285 (356)
Q Consensus       206 ~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~~~  285 (356)
                      |+++++|+++||||||+++++|+||++++...++++++++|.++++++|++|++.++|||+|+||+|.++++++++|+++
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~  240 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG  240 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence            99999999999999986689999999986434566668999999999999999976578999999999999999999975


Q ss_pred             CCCCCcEEEeeeecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018433          286 LRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK  355 (356)
Q Consensus       286 ~~~~~~v~~~~~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~  355 (356)
                      ..+++.++|+++++|+| ++|+|||+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|++
T Consensus       241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~  311 (312)
T TIGR01772       241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA  311 (312)
T ss_pred             hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33334688988999998 78999999999999999999994389999999999999999999999999875

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=4.8e-68  Score=501.62  Aligned_cols=297  Identities=38%  Similarity=0.584  Sum_probs=270.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +||+|||| |+||+++|+.|+..++.+||+|+|+++  ++|.++||.|+.+.  ...+.. ++.| +++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCC-hhhhcCCCEEEEeC
Confidence            59999999 999999999998788888999999997  89999999999753  234443 2245 48899999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  199 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~  199 (356)
                      |.||||||+|+|++..|++|+++++++|.++|||++++++|||+|++||++    ++.+|+|++||||+ |.||++||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998865    78899999999999 9999999999


Q ss_pred             HHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----C----CCHHHHHHHHHHHhcchhHHHhhhccCCcccchH
Q 018433          200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM  271 (356)
Q Consensus       200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~  271 (356)
                      +||+++|+++++|+++|+|+||+ ++||+||++++.+    +    .++++++++.++|+++|++|++.| |.| ++||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            99999999999999999999999 9999999999753    1    233567899999999999999976 444 99999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018433          272 AYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  349 (356)
Q Consensus       272 A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~  349 (356)
                      |.++++++++|++|++   +++|++ +++|+| ++|+|+|+||++|++|+++++++ +|+++|+++|++|++.||+.++.
T Consensus       231 A~a~a~~~~ail~d~~---~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~  306 (313)
T COG0039         231 AAALARMVEAILRDEK---RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIEL  306 (313)
T ss_pred             HHHHHHHHHHHHcCCC---ceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999974   589997 899999 89999999999999999999996 99999999999999999999999


Q ss_pred             hhhhhc
Q 018433          350 GISFSK  355 (356)
Q Consensus       350 ~~~~~~  355 (356)
                      +.++..
T Consensus       307 ~~~~~~  312 (313)
T COG0039         307 VKELVL  312 (313)
T ss_pred             HHHhhc
Confidence            987754

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=2.8e-67  Score=503.91  Aligned_cols=316  Identities=78%  Similarity=1.202  Sum_probs=288.3

Q ss_pred             hhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433           33 QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG  112 (356)
Q Consensus        33 ~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  112 (356)
                      -+.||++++.++.||+||||+|+||+++++.|+.+++++||+|+|++++.++++||.|+.....+..+.+++|++++++|
T Consensus         7 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~   86 (323)
T PLN00106          7 LRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKG   86 (323)
T ss_pred             hhccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCC
Confidence            47899999999999999999999999999999999999999999998888999999999764456554456788899999


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechh
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  192 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~l  192 (356)
                      ||+||+++|.|+++|++|.+++..|.++++++++++++++|+++++++|||+|.+++++++++++.+++||+||||+|.|
T Consensus        87 aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~L  166 (323)
T PLN00106         87 ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL  166 (323)
T ss_pred             CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999777777777889999999999999889


Q ss_pred             hHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHH
Q 018433          193 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  272 (356)
Q Consensus       193 d~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A  272 (356)
                      |++||++++|+++|+++.+|+++|+||||+.++||+||++++..+++++++++|.++++++|++|++.|.|||+|+||+|
T Consensus       167 Ds~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a  246 (323)
T PLN00106        167 DVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMA  246 (323)
T ss_pred             hHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHH
Confidence            99999999999999999999999999997669999999997643466667899999999999999997546899999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018433          273 YAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ  348 (356)
Q Consensus       273 ~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~  348 (356)
                      .++++++++|++|+++++.++||++++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus       247 ~a~~~ii~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~  322 (323)
T PLN00106        247 YAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE  322 (323)
T ss_pred             HHHHHHHHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            9999999999998765556999998887764349999999999999999999559999999999999999998875

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=5.5e-65  Score=486.14  Aligned_cols=286  Identities=27%  Similarity=0.395  Sum_probs=260.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC---CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~---~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|+...   ..+++.  ++|+ ++++|||+||+++
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~--~~~y-~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR--AGDY-DDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE--ECCH-HHhCCCCEEEECC
Confidence            7999999 999999999999999999999999987  79999999997532   245554  2565 8899999999999


Q ss_pred             CCCCCCCCc--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          121 GVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       121 g~~~~~g~~--r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      |.|++||++  |+|++..|+++++++++.+.+++|++++|++|||+|+||+++    ++.+|||++||||+ |.||++||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999998765    77889999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-C---------CCHHHHHHHHHHHhcchhHHHhhhccCCcc
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  267 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t  267 (356)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+ +         ..+.+++++.++++++|++|++   +||+|
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCee
Confidence            9999999999999999999999999 9999999998743 1         1223578999999999999999   56899


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 018433          268 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG  345 (356)
Q Consensus       268 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~  345 (356)
                      +||+|.++++++++|++|.+   .++|++ +++|+| ++|+|+|+||+||++|+++++++ +|+++|+++|++|++.|++
T Consensus       229 ~~~ia~a~~~ii~ail~d~~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~  304 (307)
T cd05290         229 NAGIAKSASRLIKAILLDER---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRE  304 (307)
T ss_pred             hHHHHHHHHHHHHHHHhCCC---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998864   488887 789999 78999999999999999999995 9999999999999999997


Q ss_pred             HH
Q 018433          346 SI  347 (356)
Q Consensus       346 ~~  347 (356)
                      .+
T Consensus       305 ~~  306 (307)
T cd05290         305 TI  306 (307)
T ss_pred             Hh
Confidence            65

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=2.6e-64  Score=482.94  Aligned_cols=313  Identities=61%  Similarity=0.968  Sum_probs=280.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      -++.||+||||||+||+++++.|+..+..+||+|+|++.+.++++||.|+.....+.......+++++++|||+||+++|
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            35669999999999999999999988999999999995589999999998653344433211343689999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHH
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  201 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~l  201 (356)
                      .|+++|++|.+++..|++++++++++|++++|+++|+++|||+|++++++.+.+++.+++||+||||++.|||+||++++
T Consensus        86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l  165 (321)
T PTZ00325         86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV  165 (321)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887545568899999999999779999999999


Q ss_pred             HHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHH
Q 018433          202 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA  281 (356)
Q Consensus       202 a~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~a  281 (356)
                      |+++|++|++|+++||||||++++||+||++.+  ++++++++++.+++++++++|++.|.|||+|+||+|.++++++++
T Consensus       166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~--~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~a  243 (321)
T PTZ00325        166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGL--SLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTS  243 (321)
T ss_pred             HHHhCcChhheEEEEEeecCCcccccchhccCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence            999999999999999999998459999999943  466777999999999999999998766799999999999999999


Q ss_pred             HHcCCCCCCcEEEeeeecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 018433          282 CLRGLRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK  356 (356)
Q Consensus       282 i~~~~~~~~~v~~~~~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~~  356 (356)
                      |++|.++++.++++++++|+| .+|+|+|+||++|++|+++++++++|+++|+++|++|++.|++.++++++|++|
T Consensus       244 il~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~  319 (321)
T PTZ00325        244 VLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLKKNIEKGLEFARK  319 (321)
T ss_pred             HHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998744344688888889999 689999999999999999999933999999999999999999999999999986

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=8.7e-64  Score=479.15  Aligned_cols=291  Identities=24%  Similarity=0.340  Sum_probs=262.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCCCChhhhhCCCcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      +.+||+|||| |+||+++++.|+.+++++||+|+|+++  +.|+++||+|+.... ..... .++|+ ++++|||+||++
T Consensus         2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvit   78 (312)
T cd05293           2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVT   78 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEEC
Confidence            4579999998 999999999999999999999999987  799999999997322 22332 34676 579999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~  198 (356)
                      +|.|+++||+|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++    ++.+|+|++||||+ |.||+.|++
T Consensus        79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~  154 (312)
T cd05293          79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFR  154 (312)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999997654    77789999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccCCc
Q 018433          199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  266 (356)
Q Consensus       199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  266 (356)
                      +++|+++++++++|+++||||||+ +++|+||++++.+            ..++++++++.++++++|++|++   +||+
T Consensus       155 ~~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~  230 (312)
T cd05293         155 YLIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKGY  230 (312)
T ss_pred             HHHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcCC
Confidence            999999999999999999999999 9999999998743            12234588999999999999999   5689


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHH
Q 018433          267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL  343 (356)
Q Consensus       267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l  343 (356)
                      |+||+|.++++++++|++|++   .+++++ +++|+|  |+|++||+||+||++|+++++++ +|+++|+++|++|++.|
T Consensus       231 t~~~~a~a~~~ii~ail~d~~---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i  306 (312)
T cd05293         231 TSWAIGLSVADLVDAILRNTG---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTL  306 (312)
T ss_pred             chHHHHHHHHHHHHHHHcCCC---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHH
Confidence            999999999999999999875   488887 789988  58999999999999999999995 99999999999999999


Q ss_pred             HHHHH
Q 018433          344 AGSIQ  348 (356)
Q Consensus       344 ~~~~~  348 (356)
                      ++.++
T Consensus       307 ~~~~~  311 (312)
T cd05293         307 WEVQK  311 (312)
T ss_pred             HHHhh
Confidence            98764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=9.6e-64  Score=480.13  Aligned_cols=296  Identities=27%  Similarity=0.392  Sum_probs=263.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC-C-CeEEEEeCCCChhhhh
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENAL  110 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al  110 (356)
                      ++|.||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++|+++||+|+.. . ..+++.  ++| ++++
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~   77 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAF   77 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHh
Confidence            368999999988999999999999999999     999999954    7999999999963 1 223332  345 5899


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEEE
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLG  188 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kviG  188 (356)
                      +|||+||++||.|+++|++|+|++..|++++++++++|.+++| ++++|++|||+|++|+++    ++.+ |||++||||
T Consensus        78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG  153 (323)
T TIGR01759        78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSA  153 (323)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEE
Confidence            9999999999999999999999999999999999999999998 999999999999998765    6778 999999999


Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCc-ccEEecccCcccccccccCCCCC----C-CCHHH--HHHHHHHHhcchhHHHhh
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----S-FTQEE--TEYLTNRIQNGGTEVVEA  260 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~~~~vp~~s~~~v~~----~-~~~~~--~~~l~~~v~~~~~~ii~~  260 (356)
                      +|.||++||++++|+++|++|++|+ .+||||||+ +++|+||++++.+    + ++++.  +++|.+++++++++|++ 
T Consensus       154 ~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~-  231 (323)
T TIGR01759       154 MTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE-  231 (323)
T ss_pred             eeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh-
Confidence            9999999999999999999999995 569999999 9999999998753    1 33333  67999999999999999 


Q ss_pred             hccCCcccc-hHHHHHHHHHHHHHcCCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCceEEecc-CCCCCHHHHH
Q 018433          261 KAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYERI  334 (356)
Q Consensus       261 ~~gkg~t~~-s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~d~~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~  334 (356)
                        +||+|+| ++|.++++++++|++|++. ..++|++ +++| +|  |+|+|||+||++|++|++++++ + +|+++|++
T Consensus       232 --~kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~  307 (323)
T TIGR01759       232 --ARGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRG  307 (323)
T ss_pred             --ccCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHH
Confidence              5688999 5779999999999999732 2489998 7899 88  5899999999999999999999 6 99999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 018433          335 GLEKAKKELAGSIQKG  350 (356)
Q Consensus       335 ~L~~sa~~l~~~~~~~  350 (356)
                      +|++|++.|+++++++
T Consensus       308 ~l~~sa~~lk~~~~~~  323 (323)
T TIGR01759       308 KLDATEDELLEEKEEA  323 (323)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999998764

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=7.3e-63  Score=473.24  Aligned_cols=310  Identities=56%  Similarity=0.880  Sum_probs=278.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      |||+||||+|.+|+++++.|.. .+...+|+|+|+++ ..++++|+.|......+... ..+|++++++|+|+||+++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence            7999999999999999999866 56778999999987 67888999986322344432 245767899999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHH
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA  202 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la  202 (356)
                      ++++|++|.+++..|++++++++++|++++|+++++++|||+|+||+++++.+++.+|+|++||||+|.||++|+++++|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888899999999999998899999999999


Q ss_pred             HHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHH
Q 018433          203 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC  282 (356)
Q Consensus       203 ~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai  282 (356)
                      ++||+++++|+++||||||++++||+||++ .+.++++++++++.+++++++++|++.|.|+|+|+||+|.++++++++|
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai  238 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL  238 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence            999999999999999999776899999999 3335777779999999999999999976567999999999999999999


Q ss_pred             HcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 018433          283 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK  356 (356)
Q Consensus       283 ~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~~  356 (356)
                      ++++++++.++|+++++|+-.+++|||+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|.+|
T Consensus       239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~  312 (312)
T PRK05086        239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_pred             HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            98865555689987777653468999999999999999999955999999999999999999999999999875

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=6e-63  Score=478.67  Aligned_cols=291  Identities=24%  Similarity=0.370  Sum_probs=263.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      +||+|||| |+||+++++.|+.+++++||+|+|+++  +.|+++||+|+... ...++. .++|+ ++++|||+||++||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~dy-~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTDY-AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCCH-HHhCCCCEEEECCC
Confidence            69999998 999999999999999999999999988  79999999998632 223433 23575 67999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHH
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  200 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~  200 (356)
                      .|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++    ++.+|||++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998765    67789999999999 79999999999


Q ss_pred             HHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433          201 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  268 (356)
Q Consensus       201 la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  268 (356)
                      +|+++|+++++|+++||||||+ +++|+||++++.+            .+++++++++.+++++++++|++   +||+|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence            9999999999999999999998 9999999998632            13334578999999999999999   578999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-C--CccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433          269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-T--ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  344 (356)
Q Consensus       269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~--~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~  344 (356)
                      ||+|.++++++++|++|.+   .++|++ +++|+| .  +++|+|+||+||++|+++++++ +|+++|+++|++|++.|+
T Consensus       267 ~gia~a~a~ii~ail~d~~---~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~  342 (350)
T PLN02602        267 WAIGYSVASLVRSLLRDQR---RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLW  342 (350)
T ss_pred             HHHHHHHHHHHHHHHhcCC---CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            9999999999999999975   489998 679998 3  7999999999999999999995 999999999999999999


Q ss_pred             HHHHHh
Q 018433          345 GSIQKG  350 (356)
Q Consensus       345 ~~~~~~  350 (356)
                      +.++..
T Consensus       343 ~~~~~~  348 (350)
T PLN02602        343 EVQSQL  348 (350)
T ss_pred             HHHHHh
Confidence            887664

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.5e-63  Score=449.65  Aligned_cols=292  Identities=23%  Similarity=0.363  Sum_probs=266.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..||+|+|+ |+||.+.|+.++.+++.+||+|+|.++  ++|++|||+|...+ ..-++. ..+|| .+.+++|+||+||
T Consensus        20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~-~~~Dy-~~sa~S~lvIiTA   96 (332)
T KOG1495|consen   20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVV-ASKDY-SVSANSKLVIITA   96 (332)
T ss_pred             CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceE-ecCcc-cccCCCcEEEEec
Confidence            579999999 999999999999999999999999998  89999999998642 222332 24686 7789999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  199 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~  199 (356)
                      |..+++|++|++++++|+.+++.+.+++.+|.||+++|++|||+|+|||+.    |+.+|||++||||. |+||+.|||+
T Consensus        97 Garq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaRFry  172 (332)
T KOG1495|consen   97 GARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSARFRY  172 (332)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHHHHH
Confidence            999999999999999999999999999999999999999999999998764    89999999999999 9999999999


Q ss_pred             HHHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccCCcc
Q 018433          200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  267 (356)
Q Consensus       200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t  267 (356)
                      +++++||++|++++++++||||+ +.||.||.+.+.+            ..+++.|+++.++|...+|+|++.   ||+|
T Consensus       173 Li~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---KGyT  248 (332)
T KOG1495|consen  173 LIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---KGYT  248 (332)
T ss_pred             HHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---cCch
Confidence            99999999999999999999999 8999999987631            356778999999999999999995   5999


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433          268 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  344 (356)
Q Consensus       268 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~  344 (356)
                      .|++|.++++++++|+.|++   .++|++ .++|.|  .+|+|+|+||++|++|+..++.. +|+++|.++|.+||+.|.
T Consensus       249 swaIglsva~l~~ail~n~~---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~tl~  324 (332)
T KOG1495|consen  249 SWAIGLSVADLAQAILRNLR---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAKTLL  324 (332)
T ss_pred             HHHHHHHHHHHHHHHHhCcC---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHHHHH
Confidence            99999999999999999986   488988 679998  56999999999999999999996 999999999999999998


Q ss_pred             HHHHHhh
Q 018433          345 GSIQKGI  351 (356)
Q Consensus       345 ~~~~~~~  351 (356)
                      + +|+.+
T Consensus       325 ~-~q~~l  330 (332)
T KOG1495|consen  325 E-AQKSL  330 (332)
T ss_pred             H-HHHhc
Confidence            6 44443

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=5.5e-62  Score=467.74  Aligned_cols=292  Identities=24%  Similarity=0.394  Sum_probs=265.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .++||+|||| |.||+++++.|+..++++||+|+|+++  ++|+++||.|+... ..+...  ++|+ ++++|||+||++
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~~-~~~~~adivIit   80 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGDY-SDCKDADLVVIT   80 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCCH-HHhCCCCEEEEe
Confidence            3469999999 999999999999999999999999987  78999999998632 344543  3565 789999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~  198 (356)
                      +|.|+++|++|.|++..|+++++++++.+++++|++|+|++|||+|++|+++    ++.+|+|++||||+ |.||+.|++
T Consensus        81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~  156 (315)
T PRK00066         81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFR  156 (315)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998754    66789999999999 899999999


Q ss_pred             HHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----------CCCHHHHHHHHHHHhcchhHHHhhhccCCcc
Q 018433          199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  267 (356)
Q Consensus       199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t  267 (356)
                      +++|+++|+++++|+++||||||+ +++|+||++++.+           .+++++++++.+++++++++|++   +||++
T Consensus       157 ~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~t  232 (315)
T PRK00066        157 YMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGAT  232 (315)
T ss_pred             HHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCee
Confidence            999999999999999999999999 9999999998742           13446688999999999999999   56899


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 018433          268 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG  345 (356)
Q Consensus       268 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~  345 (356)
                      +||+|.++++++++|+++.+   .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       233 ~~~~a~~~~~i~~ail~~~~---~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~  308 (315)
T PRK00066        233 YYGIAMALARITKAILNNEN---AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKE  308 (315)
T ss_pred             hHHHHHHHHHHHHHHHcCCC---eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999864   588887 789999 78999999999999999999995 9999999999999999999


Q ss_pred             HHHHh
Q 018433          346 SIQKG  350 (356)
Q Consensus       346 ~~~~~  350 (356)
                      .++..
T Consensus       309 ~~~~~  313 (315)
T PRK00066        309 IMDEA  313 (315)
T ss_pred             HHHHh
Confidence            88753

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=3e-62  Score=470.33  Aligned_cols=299  Identities=22%  Similarity=0.300  Sum_probs=263.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC-C-CeEEEEeCCCChhhhh
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENAL  110 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al  110 (356)
                      .+|+||+||||+|+||+++++.|+..++++     ||+|+|+++    ++|+++||+|+.+ . ..+++.  +++ ++++
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~   78 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAF   78 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHh
Confidence            357899999988999999999999999888     999999954    6899999999862 2 234432  345 5899


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEEE
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLG  188 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kviG  188 (356)
                      +|||+||++||.|+++|++|.|++..|++++++++++|.+++ |++++|++|||+|++|+++    ++.+ |||++||||
T Consensus        79 ~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG  154 (326)
T PRK05442         79 KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTA  154 (326)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEe
Confidence            999999999999999999999999999999999999999988 7999999999999998875    5667 999999999


Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCccc-EEecccCcccccccccCCCCC----C-CCHHH--HHHHHHHHhcchhHHHhh
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPC----S-FTQEE--TEYLTNRIQNGGTEVVEA  260 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~~~-viG~hg~~~~vp~~s~~~v~~----~-~~~~~--~~~l~~~v~~~~~~ii~~  260 (356)
                      +|.||++||++++|+++++++++|+++ ||||||+ +++|+||++++.+    + +++.+  +++|.+++++++++|++ 
T Consensus       155 ~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~-  232 (326)
T PRK05442        155 MTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE-  232 (326)
T ss_pred             eeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh-
Confidence            999999999999999999999999986 5899999 9999999998853    1 33433  57899999999999999 


Q ss_pred             hccCCcccchHHHH-HHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 018433          261 KAGAGSATLSMAYA-AVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL  336 (356)
Q Consensus       261 ~~gkg~t~~s~A~a-~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L  336 (356)
                        +||+|+|++|.+ +++++++|++|.+. ..++|++ +++|+|  |+++|||+||++| +|+++++..++|+++|+++|
T Consensus       233 --~kG~t~~~~a~~~~~~iv~ail~~~~~-~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l  308 (326)
T PRK05442        233 --ARGASSAASAANAAIDHVRDWVLGTPE-GDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKI  308 (326)
T ss_pred             --CcCCccHHHHHHHHHHHHHHHHhCCCC-CeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHH
Confidence              568999999999 59999999998521 2489998 679999  5899999999999 99999966349999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 018433          337 EKAKKELAGSIQKGISF  353 (356)
Q Consensus       337 ~~sa~~l~~~~~~~~~~  353 (356)
                      ++|++.|+++.+.+..+
T Consensus       309 ~~s~~~l~~~~~~~~~~  325 (326)
T PRK05442        309 DATLAELEEERDAVKHL  325 (326)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999887654

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.5e-62  Score=468.26  Aligned_cols=281  Identities=25%  Similarity=0.428  Sum_probs=254.9

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           49 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        49 IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||+ |+||+++++.|+..++++||+|+|+++  ++|+++||+|+...  ..++..  .+|+ ++++|||+||+++|.|+
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~~-~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGDY-SDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCCH-HHHCCCCEEEECCCCCC
Confidence            6899 999999999999999999999999987  89999999998642  234443  3564 88999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHHHHH
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE  203 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~la~  203 (356)
                      +|||+|.|++..|+++++++++.|++++|++++|++|||+|++|+++    ++.+++|++||||+ |.||+.|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998764    67789999999999 89999999999999


Q ss_pred             HhCCCCCCCcccEEecccCcccccccccCCCCC----CC-------CHHHHHHHHHHHhcchhHHHhhhccCCcccchHH
Q 018433          204 VLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----SF-------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  272 (356)
Q Consensus       204 ~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~~-------~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A  272 (356)
                      ++|+++++|+++||||||+ +++|+||++++.+    ++       .+.+++++.++++++|++|++   +||+|+|++|
T Consensus       153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHH
Confidence            9999999999999999998 9999999998743    11       133477999999999999999   5689999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 018433          273 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG  345 (356)
Q Consensus       273 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~  345 (356)
                      .++++++++|++|++   .++|++ +++|+| .+|+|||+||+||++|+++++++ +|+++|+++|++|++.||+
T Consensus       229 ~a~~~~i~ail~d~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~  299 (299)
T TIGR01771       229 MAVARIVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK  299 (299)
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence            999999999999865   589997 789999 67899999999999999999995 9999999999999999873

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=1.4e-61  Score=478.66  Aligned_cols=301  Identities=22%  Similarity=0.254  Sum_probs=265.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhh
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENA  109 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~-------~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~a  109 (356)
                      -.++.||+||||+|+||+++++.|+.+       ++..||+|+|+++  ++|+++||+|+.+.  ..+.+.  ++| +++
T Consensus        97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~  173 (444)
T PLN00112         97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEV  173 (444)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHH
Confidence            356789999999999999999999998       7777999999988  89999999998631  234432  355 588


Q ss_pred             hCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      ++|||+||+++|.|+++||+|+|++..|+++++++++.|.+ ++|+++||++|||+|++|+++    ++.+|++++|+||
T Consensus       174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViG  249 (444)
T PLN00112        174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFH  249 (444)
T ss_pred             hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEE
Confidence            99999999999999999999999999999999999999999 589999999999999998765    6778999999999


Q ss_pred             e-chhhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCC-C----CCHHH--HHHHHHHHhcchhHHHh
Q 018433          189 V-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVE  259 (356)
Q Consensus       189 ~-t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~ii~  259 (356)
                      + |.||++||+++||+++|+++++| +++||||||+ ++||+||++++.+ +    +++.+  +++|.++++++|++|++
T Consensus       250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~  328 (444)
T PLN00112        250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK  328 (444)
T ss_pred             eeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence            9 99999999999999999999999 6699999999 9999999998853 1    23323  67999999999999999


Q ss_pred             hhccCCcccc-hHHHHHHHHHHHHHcCCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCceEEec-cCCCCCHHHH
Q 018433          260 AKAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIF-QLGPLNEYER  333 (356)
Q Consensus       260 ~~~gkg~t~~-s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~d~~~s~P~~ig~~Gv~~i~-~~~~L~~~E~  333 (356)
                         +||+++| ++|.++++++.+|+++.+. +.++|++ +++| +|  ++|+|||+||++|++|+++++ ++ +|+++|+
T Consensus       329 ---~kG~t~~~s~a~ai~~~I~ail~~~d~-~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~  403 (444)
T PLN00112        329 ---KWGRSSAASTAVSIADAIKSLVTPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLR  403 (444)
T ss_pred             ---ccCchhHHHHHHHHHHHHHHHHcCCCC-CeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHH
Confidence               5677777 9999999999999955442 3599998 7899 48  589999999999999999999 65 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh
Q 018433          334 IGLEKAKKELAGSIQKGISFS  354 (356)
Q Consensus       334 ~~L~~sa~~l~~~~~~~~~~~  354 (356)
                      ++|++|++.|+++.+.+...+
T Consensus       404 ~~l~~Sa~~L~~e~~~~~~~~  424 (444)
T PLN00112        404 ERIKKSEAELLAEKRCVAHLT  424 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998876553

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=2.7e-61  Score=470.23  Aligned_cols=300  Identities=22%  Similarity=0.259  Sum_probs=262.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--eCCC--chhHHHHHhcCCC-C-CeEEEEeCCCChhhhh
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMDT-G-AVVRGFLGQPQLENAL  110 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~--D~~~--~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al  110 (356)
                      .+|.||+||||+|+||+++|+.|+.+++++     +|+|+  |+++  ++|+++||.|+.+ . ..+.+.  ++| ++++
T Consensus        42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~~~  118 (387)
T TIGR01757        42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YEVF  118 (387)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence            347999999999999999999999999988     57777  6665  7999999999862 1 234332  355 5899


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      +|||+||+++|.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++    ++.+++|++|+||+
T Consensus       119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rviG~  194 (387)
T TIGR01757       119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNFHA  194 (387)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEEEe
Confidence            999999999999999999999999999999999999999988 9999999999999998765    67789999999999


Q ss_pred             -chhhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCC-C----CCHHH--HHHHHHHHhcchhHHHhh
Q 018433          190 -TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEA  260 (356)
Q Consensus       190 -t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~ii~~  260 (356)
                       |.||++||+++||+++++++++| +++||||||+ +++|+||++++.+ +    +++.+  +++|.+++++++++|++ 
T Consensus       195 gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~-  272 (387)
T TIGR01757       195 LTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK-  272 (387)
T ss_pred             cchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh-
Confidence             99999999999999999999999 5999999999 9999999998743 1    22223  68999999999999999 


Q ss_pred             hccCCcccc-hHHHHHHHHHHHHHcCCCCCCcEEEee-eecCC-C--CCccEEEEeEEEcCCceEEec-cCCCCCHHHHH
Q 018433          261 KAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIF-QLGPLNEYERI  334 (356)
Q Consensus       261 ~~gkg~t~~-s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~-~--~~d~~~s~P~~ig~~Gv~~i~-~~~~L~~~E~~  334 (356)
                        +||++.| |+|.++++++++|+++.+. ..++|++ +++|+ |  ++|+|||+||++|++|+++++ ++ +|+++|++
T Consensus       273 --~KG~t~~~s~a~ai~~~i~ai~~g~d~-~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~~  348 (387)
T TIGR01757       273 --KWGRSSAASTAVSIADAIKSLVVPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLRE  348 (387)
T ss_pred             --ccCchhHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHHH
Confidence              4676776 9999999999999955543 3588998 67996 8  589999999999999999996 75 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 018433          335 GLEKAKKELAGSIQKGISFS  354 (356)
Q Consensus       335 ~L~~sa~~l~~~~~~~~~~~  354 (356)
                      +|++|++.|+++.+.+.+..
T Consensus       349 ~l~~Sa~~L~~e~~~~~~~~  368 (387)
T TIGR01757       349 RIRKSEDELLKEKECVAHLI  368 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999999998887643

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=3.4e-61  Score=463.08  Aligned_cols=294  Identities=28%  Similarity=0.382  Sum_probs=260.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~a  113 (356)
                      .||+||||+|+||+++++.|+.+++++     +|+|+|+++    ++|+++||.|+.+  .....+.  +.+ +++++||
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-~~~~~~a   77 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-EEAFKDV   77 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-HHHhCCC
Confidence            489999999999999999999989888     599999985    7899999999852  2223332  234 6899999


Q ss_pred             cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC-CCCCCEEEech
Q 018433          114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT-YDPKKLLGVTM  191 (356)
Q Consensus       114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~-~~~~kviG~t~  191 (356)
                      |+||++||.|+++|++|.|++..|+++++++++.|+++| |++++|++|||+|++|+++    ++.+| +|++||||+|.
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~  153 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTR  153 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeH
Confidence            999999999999999999999999999999999999997 9999999999999998764    67788 59999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCCC---------CCHH-HHHHHHHHHhcchhHHHhh
Q 018433          192 LDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCS---------FTQE-ETEYLTNRIQNGGTEVVEA  260 (356)
Q Consensus       192 ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~~---------~~~~-~~~~l~~~v~~~~~~ii~~  260 (356)
                      ||++|||+++|++++++|++| +++||||||+ +++|+||++++.+.         ++++ ..++|.+++++++++|++ 
T Consensus       154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~-  231 (323)
T cd00704         154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK-  231 (323)
T ss_pred             HHHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh-
Confidence            999999999999999999999 5689999999 99999999987431         2222 257899999999999999 


Q ss_pred             hccCCcccch-HHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHH
Q 018433          261 KAGAGSATLS-MAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIG  335 (356)
Q Consensus       261 ~~gkg~t~~s-~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~  335 (356)
                        +||+++|+ +|.++++++++|++|++++ .++|++ +++|+|   |+|+|||+||+||++||++++++ +|+++|+++
T Consensus       232 --~kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~  307 (323)
T cd00704         232 --KRGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREK  307 (323)
T ss_pred             --ccCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHH
Confidence              46889996 6999999999999998633 499997 789987   47999999999999999999995 999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 018433          336 LEKAKKELAGSIQKGI  351 (356)
Q Consensus       336 L~~sa~~l~~~~~~~~  351 (356)
                      |++|++.|+++.+.++
T Consensus       308 l~~s~~~l~~~~~~~~  323 (323)
T cd00704         308 LKATEEELIEEKEIAL  323 (323)
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999999998764

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=4.7e-60  Score=455.49  Aligned_cols=297  Identities=31%  Similarity=0.497  Sum_probs=266.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      .+.+||+|||| |+||+++++.++..++ .+|+|+|+++  +.+.++|+.|....  ...++. .++|+ ++++|||+||
T Consensus         3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEE
Confidence            35679999999 9999999999998887 6899999988  68899999998532  223332 34687 5899999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHH
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  196 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R  196 (356)
                      +++|.|+++|++|.|++..|.++++++++.|+++||++|+|++|||+|++++++    ++.+++|++||+|+ |.||++|
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R  154 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSR  154 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHH
Confidence            999999999999999999999999999999999999999999999999998654    67789999999999 5999999


Q ss_pred             HHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhccCCc
Q 018433          197 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  266 (356)
Q Consensus       197 ~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  266 (356)
                      +++++|+++|+++++|+++|+||||+ +++|+||++++.+          .+.+++++++.+++++++++|++.+ |||+
T Consensus       155 ~~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~  232 (319)
T PTZ00117        155 FRCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGS  232 (319)
T ss_pred             HHHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCC
Confidence            99999999999999999999999998 9999999998742          1455668899999999999999976 7899


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433          267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  344 (356)
Q Consensus       267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~  344 (356)
                      +.||+|.++++++++|++|.+   .++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|+..|+
T Consensus       233 t~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~  308 (319)
T PTZ00117        233 AFFAPAAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQ  308 (319)
T ss_pred             hHHHHHHHHHHHHHHHhcCCC---eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999864   589998 789999 56999999999999999999995 999999999999999999


Q ss_pred             HHHHHhhh
Q 018433          345 GSIQKGIS  352 (356)
Q Consensus       345 ~~~~~~~~  352 (356)
                      +.++....
T Consensus       309 ~~~~~~~~  316 (319)
T PTZ00117        309 ELTQKAKA  316 (319)
T ss_pred             HHHHHHHH
Confidence            99887654

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=1.8e-60  Score=457.80  Aligned_cols=295  Identities=22%  Similarity=0.305  Sum_probs=263.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCChhhhhC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT  111 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~  111 (356)
                      +|+||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++|+++||+|+.+  ...+++.  ++| +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            47899999998999999999999999999     999999954    6899999999863  1234443  345 58999


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEEEe
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  189 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kviG~  189 (356)
                      |||+||+++|.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++    ++.+ +||++||||+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~  153 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM  153 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence            99999999999999999999999999999999999999999 5999999999999998765    5667 5999999999


Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcc-cEEecccCcccccccccCCCCC-----CCCHHH--HHHHHHHHhcchhHHHhhh
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-----SFTQEE--TEYLTNRIQNGGTEVVEAK  261 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~-~viG~hg~~~~vp~~s~~~v~~-----~~~~~~--~~~l~~~v~~~~~~ii~~~  261 (356)
                      |.||+.||++.+|+++|+++++|++ +|||+||+ +++|+||++++.+     .+.+.+  +++|.+++++++++|++  
T Consensus       154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~--  230 (322)
T cd01338         154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK--  230 (322)
T ss_pred             hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh--
Confidence            9999999999999999999999997 56999998 9999999998742     134433  67999999999999999  


Q ss_pred             ccCCcccchHH-HHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 018433          262 AGAGSATLSMA-YAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  337 (356)
Q Consensus       262 ~gkg~t~~s~A-~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~  337 (356)
                       +||+++|++| .++++++++|++|++. ..++|++ +++|+|  |+++|||+||++|++||++++++ +|+++|+++|+
T Consensus       231 -~kG~t~~~~~a~a~~~iv~ail~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~  307 (322)
T cd01338         231 -ARGASSAASAANAAIDHMRDWVLGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKID  307 (322)
T ss_pred             -CcCCccHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHH
Confidence             5689999999 5999999999999851 2588998 679998  58999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHh
Q 018433          338 KAKKELAGSIQKG  350 (356)
Q Consensus       338 ~sa~~l~~~~~~~  350 (356)
                      +|++.|+++.++.
T Consensus       308 ~s~~~l~~~~~~~  320 (322)
T cd01338         308 ATLAELLEEREAV  320 (322)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998765

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=1.9e-60  Score=456.37  Aligned_cols=288  Identities=25%  Similarity=0.395  Sum_probs=260.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +||+|||+ |.+|+++++.|+..++..+|+|+|+++  ++++++||.|+...  ......  +.++ +++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~-~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDY-SDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCH-HHhCCCCEEEEcc
Confidence            38999999 999999999999999888999999987  78999999988531  233333  2455 6799999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  199 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~  199 (356)
                      |.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++    ++.++||++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998764    67799999999999 8999999999


Q ss_pred             HHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhccCCcccc
Q 018433          200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  269 (356)
Q Consensus       200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~  269 (356)
                      ++|+++|+++++|+++|||+||+ +++|+||++++.+          .+.+++++++.++++++|++|++   +||+|+|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHH
Confidence            99999999999999999999999 9999999998743          13345688999999999999999   5689999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          270 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       270 s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      ++|.++++++++|++|.+   .++|++ +++|+| ++|+|||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       229 ~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~  304 (306)
T cd05291         229 GIATALARIVKAILNDEN---AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENI  304 (306)
T ss_pred             HHHHHHHHHHHHHHcCCC---EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999865   588987 789999 78999999999999999999995 999999999999999999876


Q ss_pred             H
Q 018433          348 Q  348 (356)
Q Consensus       348 ~  348 (356)
                      +
T Consensus       305 ~  305 (306)
T cd05291         305 K  305 (306)
T ss_pred             h
Confidence            5

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2e-60  Score=432.75  Aligned_cols=337  Identities=69%  Similarity=1.069  Sum_probs=315.6

Q ss_pred             HHhHHHHHhccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHH
Q 018433            8 NQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD   87 (356)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~d   87 (356)
                      ++++.|.++++-+           +-..|++....+..||+|.||+|-+|+.+.++|.+++++++|.|||+....|.+.|
T Consensus         3 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaD   71 (345)
T KOG1494|consen    3 LKSLIRSSASLSS-----------GPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAAD   71 (345)
T ss_pred             hHHHHHhhhhhcc-----------CCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCccccc
Confidence            5677888888765           33456677777888999999999999999999999999999999999889999999


Q ss_pred             HhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 018433           88 ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  167 (356)
Q Consensus        88 l~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~  167 (356)
                      |+|......+..+.+...+++++++||+|||.||+||||||+|+|++..|+.|+++++..+.++||++.+.++|||+|..
T Consensus        72 lSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNst  151 (345)
T KOG1494|consen   72 LSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNST  151 (345)
T ss_pred             ccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCccccc
Confidence            99998878888887778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCC-CCCcccEEecccCcccccccccCCCCCCCCHHHHHHH
Q 018433          168 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYL  246 (356)
Q Consensus       168 t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~-~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l  246 (356)
                      +++++|++++..-|+|+|+||+|.||..|.+.++++.++++| ++++++|+|+|.+.|++|++|+..+...+++++++.|
T Consensus       152 VPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~L  231 (345)
T KOG1494|consen  152 VPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEAL  231 (345)
T ss_pred             chHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHH
Confidence            999999999999999999999999999999999999999999 5699999999999999999999998778999999999


Q ss_pred             HHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCC
Q 018433          247 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLG  326 (356)
Q Consensus       247 ~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~  326 (356)
                      +.++|..|.|+.++|.|+|++.+|+|+|.+++..+++++.+++..++.|+|+....-+-.||+.|+++|++|++++..++
T Consensus       232 t~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~  311 (345)
T KOG1494|consen  232 THRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLG  311 (345)
T ss_pred             HHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCC
Confidence            99999999999999999999999999999999999999998877788899887764466799999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018433          327 PLNEYERIGLEKAKKELAGSIQKGISFSK  355 (356)
Q Consensus       327 ~L~~~E~~~L~~sa~~l~~~~~~~~~~~~  355 (356)
                      +|+++|++.|+.+..+||+.|+++.+|.+
T Consensus       312 ~lsd~E~~~l~~~~~eLk~sI~KGv~F~~  340 (345)
T KOG1494|consen  312 KLSDYEEKALEAAKPELKKSIEKGVTFVK  340 (345)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            99999999999999999999999999975

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=4.4e-60  Score=452.34  Aligned_cols=286  Identities=29%  Similarity=0.421  Sum_probs=259.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      |+|||+ |.||+++++.|+..++++||+|+|+++  +.|+++||.|+... ...+... ++|+ ++++|||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-ADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-HHhCCCCEEEEcCCCC
Confidence            689999 999999999999999999999999988  79999999998643 2233332 3564 7899999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHHHH
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVA  202 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~la  202 (356)
                      +++|++|.+++.+|+++++++++.|+++||++|+|++|||+|++|+++    ++.+|+|++||||+ |.||+.|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998754    77889999999999 7999999999999


Q ss_pred             HHhCCCCCCCcccEEecccCcccccccccCCCCC-C----C--CHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHH
Q 018433          203 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----F--TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA  275 (356)
Q Consensus       203 ~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~----~--~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~  275 (356)
                      +++|+++++|+++|+|+||+ +++|+||++++.+ +    +  +++.++++.+++++++++|++   +||+++||+|.++
T Consensus       154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHH
Confidence            99999999999999999998 8999999998753 1    1  234578999999999999999   5689999999999


Q ss_pred             HHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          276 VKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       276 ~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      ++++++|+++.+   .++|++ +++|+| +++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       230 ~~~~~ai~~~~~---~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~  299 (300)
T cd00300         230 ADIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL  299 (300)
T ss_pred             HHHHHHHHcCCC---eEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999999999864   588998 679999 78999999999999999999995 999999999999999999765

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-59  Score=451.13  Aligned_cols=293  Identities=33%  Similarity=0.572  Sum_probs=263.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      +.+||+|||| |+||+++++.++..++. +|+|+|+++  +.+.++|+.|...  ....++. .++|+ ++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~   80 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV   80 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence            4569999998 99999999999998874 699999988  6788999999742  1223433 35787 78999999999


Q ss_pred             cCCCCCCCCC-----cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chh
Q 018433          119 PAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML  192 (356)
Q Consensus       119 ~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~l  192 (356)
                      ++|.|+++|+     +|.+++..|+++++++++.|+++||++|+|++|||+|++++.+    ++.+++|++||||+ |.|
T Consensus        81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l  156 (321)
T PTZ00082         81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL  156 (321)
T ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence            9999999999     9999999999999999999999999999999999999998754    67889999999999 599


Q ss_pred             hHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhc
Q 018433          193 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKA  262 (356)
Q Consensus       193 d~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~  262 (356)
                      |+.|+++.+|+++|+++++|+++|+||||+ ++||+||++++.+          .++++++++|.+++++++++|++.+ 
T Consensus       157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-  234 (321)
T PTZ00082        157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-  234 (321)
T ss_pred             cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence            999999999999999999999999999999 9999999998742          1455668999999999999999976 


Q ss_pred             cCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 018433          263 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK  340 (356)
Q Consensus       263 gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa  340 (356)
                      |||+|+||+|.++++++++|++|.+   .++|++ +++|+| .+|+|+|+||+||++|+++++++ +|+++|+++|++|+
T Consensus       235 gkg~t~~~ia~a~~~i~~ail~d~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~sa  310 (321)
T PTZ00082        235 GTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESI  310 (321)
T ss_pred             CCCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHH
Confidence            7899999999999999999999865   599998 789999 67999999999999999999995 99999999999999


Q ss_pred             HHHHHHHHH
Q 018433          341 KELAGSIQK  349 (356)
Q Consensus       341 ~~l~~~~~~  349 (356)
                      +.|++.++.
T Consensus       311 ~~i~~~~~~  319 (321)
T PTZ00082        311 KEVKRLEAL  319 (321)
T ss_pred             HHHHHHHhh
Confidence            999987653

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.1e-59  Score=448.24  Aligned_cols=290  Identities=30%  Similarity=0.498  Sum_probs=260.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||+ |.||+++|+.++..++. +++|+|+++  ..+.++|+.|....  ...+.. .++|+ +++++||+||+++
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~-~t~d~-~~~~~aDiVIita   77 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT-GTNNY-ADTANSDIVVITA   77 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE-ecCCH-HHhCCCCEEEEcC
Confidence            69999999 99999999999998887 799999987  57788888876421  112222 25787 4599999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  199 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~  199 (356)
                      |.|+++|++|+|++..|.+++++++++|.+++|++++|++|||+|++|+++    ++.+|+|++||||+ |.||++|+++
T Consensus        78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~~~  153 (305)
T TIGR01763        78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARFRT  153 (305)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHHHH
Confidence            999999999999999999999999999999999999999999999998764    77889999999999 5999999999


Q ss_pred             HHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-C----CCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHH
Q 018433          200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA  274 (356)
Q Consensus       200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a  274 (356)
                      ++|++|++++++|+++||||||+ +++|+||++++.+ +    ++++.++++.+++++++++|++.+ |||+|+||+|.+
T Consensus       154 ~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~~  231 (305)
T TIGR01763       154 FIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPAAS  231 (305)
T ss_pred             HHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHH
Confidence            99999999999999999999999 9999999998753 1    344558999999999999999976 789999999999


Q ss_pred             HHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018433          275 AVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ  348 (356)
Q Consensus       275 ~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~  348 (356)
                      +++++++|++|++   .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.++
T Consensus       232 ~~~i~~ai~~~~~---~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~  303 (305)
T TIGR01763       232 VVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCK  303 (305)
T ss_pred             HHHHHHHHhCCCC---eEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999875   489997 789999 68999999999999999999996 9999999999999999998775

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=3.2e-58  Score=441.01  Aligned_cols=288  Identities=28%  Similarity=0.445  Sum_probs=261.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |||+|||+ |.||+++++.|+..++..+++|+|+++  +.+.++|+.|.... ......  ++|+ +++++||+||+++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence            69999999 999999999999999888999999987  67899999998532 233433  3565 78999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHH
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  200 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~  200 (356)
                      .|+++|++|++++..|+++++++++.|++++|+++++++|||+|++++++    ++.+|||++||||+ |.||+.|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998765    67789999999999 89999999999


Q ss_pred             HHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433          201 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  268 (356)
Q Consensus       201 la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  268 (356)
                      +|+++++++++|+++||||||+ +++|+||++++.+            .+++++++++.+++++++++|++   +||+|+
T Consensus       153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccH
Confidence            9999999999999999999999 9999999998642            23345688999999999999999   568999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 018433          269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS  346 (356)
Q Consensus       269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~  346 (356)
                      ||+|.++++++++|++|.+   .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.
T Consensus       229 ~~~a~a~~~i~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~  304 (308)
T cd05292         229 YAIGLALARIVEAILRDEN---SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEA  304 (308)
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999865   589987 789999 67999999999999999999995 99999999999999999988


Q ss_pred             HH
Q 018433          347 IQ  348 (356)
Q Consensus       347 ~~  348 (356)
                      ++
T Consensus       305 ~~  306 (308)
T cd05292         305 IE  306 (308)
T ss_pred             Hh
Confidence            76

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.1e-58  Score=443.82  Aligned_cols=296  Identities=24%  Similarity=0.321  Sum_probs=256.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEE
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      ||+||||+|+||+++++.|+.+++++     +|+|+|+++    ++|+++||.|+..... ..+..+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence            69999999999999999999988875     799999954    6799999999973211 1122233546899999999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhH
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  194 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~  194 (356)
                      |++||.|+++|++|.+++..|++++++++++|.+++ |++++|++|||+|++|+++    ++.++++++++||+ |.||+
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence            999999999999999999999999999999999996 9999999999999998765    67777777789999 99999


Q ss_pred             HHHHHHHHHHhCCCCCCCc-ccEEecccCcccccccccCCCC-C----C----CCHHH--HHHHHHHHhcchhHHHhhhc
Q 018433          195 VRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP-C----S----FTQEE--TEYLTNRIQNGGTEVVEAKA  262 (356)
Q Consensus       195 ~R~~~~la~~l~v~~~~v~-~~viG~hg~~~~vp~~s~~~v~-~----~----~~~~~--~~~l~~~v~~~~~~ii~~~~  262 (356)
                      +||+++||+++|+++++|+ ++||||||+ +++|+||++++. +    +    +++++  +++|.+++++++++|++.+ 
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  233 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR-  233 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence            9999999999999999995 699999999 999999999886 3    2    22222  5789999999999999963 


Q ss_pred             cCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCC-C--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 018433          263 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  338 (356)
Q Consensus       263 gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~-~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~  338 (356)
                       ++++.||+|.++++++++|+++.+. +.++|++ +++|+ |  |+|+|||+||++|++|++.+.++ +|+++|+++|++
T Consensus       234 -~~~t~~~ia~~~~~i~~ai~~~~~~-~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~  310 (324)
T TIGR01758       234 -KLSSALSAAKAAVDQMHDWVLGTPE-GTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLAL  310 (324)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHH
Confidence             3589999999999999999954432 3599998 78999 8  48999999999997777777665 999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 018433          339 AKKELAGSIQKGI  351 (356)
Q Consensus       339 sa~~l~~~~~~~~  351 (356)
                      |++.|+++++.++
T Consensus       311 s~~~lk~~~~~~~  323 (324)
T TIGR01758       311 TAKELEEERDEAL  323 (324)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998874

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=5.4e-58  Score=441.68  Aligned_cols=296  Identities=24%  Similarity=0.330  Sum_probs=259.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCChhhhhC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT  111 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~  111 (356)
                      +|.||+||||+|+||+++++.|+.+++++     ||+|+|+++    +.++++|+.|+..  ..++..   +++++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            47899999999999999999999888764     999999954    5788999999752  123332   357779999


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHh-CCCCCCCEEEe
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGV  189 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~-~~~~~~kviG~  189 (356)
                      |||+||++||.++++|++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++    ++. +++|+++ ||+
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~  152 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA  152 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence            99999999999999999999999999999999999999997 7999999999999998765    555 5788878 888


Q ss_pred             -chhhHHHHHHHHHHHhCCCCCCCc-ccEEecccCcccccccccCCCC----C-C----CCHHH--HHHHHHHHhcchhH
Q 018433          190 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----C-S----FTQEE--TEYLTNRIQNGGTE  256 (356)
Q Consensus       190 -t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~~~~vp~~s~~~v~----~-~----~~~~~--~~~l~~~v~~~~~~  256 (356)
                       |.||+.||++++|++|++++++|+ .+||||||+ +++|+||++++.    + +    +++++  +++|.+++++++++
T Consensus       153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~  231 (325)
T cd01336         153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA  231 (325)
T ss_pred             eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence             999999999999999999999996 559999999 999999999885    3 1    22222  58999999999999


Q ss_pred             HHhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHH
Q 018433          257 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYER  333 (356)
Q Consensus       257 ii~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~  333 (356)
                      |++.+  +|+|+||+|.++++++++|++|.+. +.++|++ +++|+|  ++|+|||+||++|++||++++++ +|+++|+
T Consensus       232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~~~-~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~  307 (325)
T cd01336         232 VIKAR--KLSSAMSAAKAICDHVHDWWFGTPE-GEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSR  307 (325)
T ss_pred             HHHcc--ccchHHHHHHHHHHHHHHHHcCCCC-CeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHH
Confidence            99963  5799999999999999999998531 2589998 689999  58999999999999999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 018433          334 IGLEKAKKELAGSIQKGI  351 (356)
Q Consensus       334 ~~L~~sa~~l~~~~~~~~  351 (356)
                      ++|++|++.|+++++.++
T Consensus       308 ~~l~~s~~~l~~e~~~~~  325 (325)
T cd01336         308 EKIDATAKELVEEKETAL  325 (325)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999998764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=5.7e-56  Score=425.41  Aligned_cols=291  Identities=25%  Similarity=0.437  Sum_probs=258.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      |||+|+||+|.+|+++++.|+..++..+|+|+|+++    +++.++|+.|...  ....+.. .++|+ +++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d~-~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSDL-SDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCCH-HHhCCCCEEEE
Confidence            799999988999999999999999988999999954    6888999998732  1223332 24565 67999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      ++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999998764    67789999999999 79999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-C------CCHHHHHHHHHHHhcchhHHHhhhccCCcccch
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS  270 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s  270 (356)
                      +++||+++++++++|+++|+||||+ +++|+||++++.+ +      ..+.+++++.+++++++++|++.   ||++.||
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~---kg~t~~~  230 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL---KGGSEYG  230 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHh---cCCchhh
Confidence            9999999999999999999999999 9999999998743 1      22445789999999999999994   5788999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          271 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       271 ~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      +|.++++++++|++|++   .++|++ +++|+|  .+|+++|+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       231 ~a~~~~~ii~ail~~~~---~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~  306 (309)
T cd05294         231 PASAISNLVRTIANDER---RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYT  306 (309)
T ss_pred             HHHHHHHHHHHHHCCCC---eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999875   488887 678987  34899999999999999999996 999999999999999999876


Q ss_pred             HH
Q 018433          348 QK  349 (356)
Q Consensus       348 ~~  349 (356)
                      +.
T Consensus       307 ~~  308 (309)
T cd05294         307 RE  308 (309)
T ss_pred             hc
Confidence            53

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=5.4e-56  Score=424.48  Aligned_cols=287  Identities=34%  Similarity=0.566  Sum_probs=257.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      |+|||| |+||+++++.++..++. +|+|+|+++  +.+.++|+.|....  ...+.. .++|+ ++++|||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence            689999 99999999999999888 999999988  67888888886421  223332 24675 779999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHHH
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFV  201 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~l  201 (356)
                      |+++|++|.+++.+|++++++++++|++++|++++|++|||+|++|+++    ++++++|++||||+ |.||+.|+++++
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998765    67789999999999 589999999999


Q ss_pred             HHHhCCCCCCCcccEEecccCcccccccccCCCCC-C----CCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHH
Q 018433          202 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV  276 (356)
Q Consensus       202 a~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~  276 (356)
                      |++|++++++|+++|+|+||+ +++|+||++++.+ +    +++++++++.+++++++++|++.+ |+|+|+||+|.+++
T Consensus       153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~  230 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA  230 (300)
T ss_pred             HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence            999999999999999999999 9999999998753 1    345568999999999999999976 77999999999999


Q ss_pred             HHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          277 KFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       277 ~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      +++++|++|++   .++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       231 ~i~~ail~~~~---~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~  299 (300)
T cd01339         231 EMVEAILKDKK---RVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELI  299 (300)
T ss_pred             HHHHHHHcCCC---cEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence            99999999864   589998 789999 56999999999999999999996 999999999999999999765

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=1.7e-56  Score=442.23  Aligned_cols=293  Identities=16%  Similarity=0.128  Sum_probs=255.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCC--C--chhHHHHHhcCCCC--CeEEEEeCCCChhhhh
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDTG--AVVRGFLGQPQLENAL  110 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~--~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al  110 (356)
                      .+|.+|+|+||||++|+++.+.++.++++     -.|+|+|++  .  ++|++|||+|+.+.  ..+.+.  +++ +++|
T Consensus       121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~ea~  197 (452)
T cd05295         121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-DVAF  197 (452)
T ss_pred             CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-HHHh
Confidence            45789999999999999999999986543     379999994  3  79999999999732  234443  344 6999


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEE
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLL  187 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kvi  187 (356)
                      +|||+||+++|.||++|++|.|++..|.+++++++++|.+++|  ++++|++|||+|++|+++    ++.+ ++|++||+
T Consensus       198 ~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rVi  273 (452)
T cd05295         198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNII  273 (452)
T ss_pred             CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEE
Confidence            9999999999999999999999999999999999999999999  889999999999999875    4445 99999999


Q ss_pred             EechhhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCC-------------C----CCHHH--HHHHH
Q 018433          188 GVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-------------S----FTQEE--TEYLT  247 (356)
Q Consensus       188 G~t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~-------------~----~~~~~--~~~l~  247 (356)
                      |++.+|++|++++||+++|+++++| +++||||||+ ++||+||++++..             +    +.+++  .+++.
T Consensus       274 g~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~  352 (452)
T cd05295         274 AVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFV  352 (452)
T ss_pred             EecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHH
Confidence            9976889999999999999999999 6799999999 9999999998732             1    22333  35678


Q ss_pred             HHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEecc
Q 018433          248 NRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQ  324 (356)
Q Consensus       248 ~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~  324 (356)
                      +.++++++   +   +||+|.||+|.|+++++++|++|++.+ .++|++ +++|+|  |+|++||+||++|++|++.+.+
T Consensus       353 ~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~~~-~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~  425 (452)
T cd05295         353 ATLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSPPG-EIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTD  425 (452)
T ss_pred             HHHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCCCC-eEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeC
Confidence            88888887   2   578999999999999999999997522 488998 789999  6899999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018433          325 LGPLNEYERIGLEKAKKELAGSIQKG  350 (356)
Q Consensus       325 ~~~L~~~E~~~L~~sa~~l~~~~~~~  350 (356)
                      + +|+++|+++|++|+++|.++.+.+
T Consensus       426 L-~L~e~E~~kL~~S~~eL~~E~~~~  450 (452)
T cd05295         426 L-ELSEILREVLKRITSDLIQEKLVA  450 (452)
T ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence            6 999999999999999999998765

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=1.1e-55  Score=423.54  Aligned_cols=292  Identities=32%  Similarity=0.564  Sum_probs=261.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      ++||+|||| |++|+++++.++..++. +|+|+|+++  +++.++|+.|....  ...+.. .++|+ +++++||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence            479999999 99999999999998887 999999987  67888998886421  123332 34676 779999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~  198 (356)
                      +|.|+++|++|.+++.+|++++++++++|.+++|++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999998765    67789999999999 699999999


Q ss_pred             HHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-C----CCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHH
Q 018433          199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY  273 (356)
Q Consensus       199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~  273 (356)
                      ++||+++++++++|+++|+|+||+ +++|+||++++.+ +    ++++.+++|.++++++++++++.+ +|+++.|++|.
T Consensus       154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~  231 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA  231 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence            999999999999999999999999 9999999998742 1    445557899999999999999964 57899999999


Q ss_pred             HHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018433          274 AAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  349 (356)
Q Consensus       274 a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~  349 (356)
                      ++++++++|+.|.+   .+++++ +++|+| .+|++||+||+||++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus       232 ~~~~ii~ail~~~~---~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~  305 (307)
T PRK06223        232 SIAEMVEAILKDKK---RVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEA  305 (307)
T ss_pred             HHHHHHHHHHcCCC---cEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999864   488887 789998 68999999999999999999995 99999999999999999988864

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=4.9e-56  Score=423.75  Aligned_cols=272  Identities=22%  Similarity=0.325  Sum_probs=241.4

Q ss_pred             EEEEEeCCC----chhHHHHHhcCCC-C-CeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 018433           72 VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC  145 (356)
Q Consensus        72 el~L~D~~~----~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~  145 (356)
                      .|+|+|+++    ++|+++||.|+.. . ..++.   ++|.+++++|||+||++||.|+++|++|.+++..|++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            899999976    7899999999862 2 23332   3454589999999999999999999999999999999999999


Q ss_pred             HHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHHHHHHhCCCCCCC-cccEEecccC
Q 018433          146 EGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAG  222 (356)
Q Consensus       146 ~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~  222 (356)
                      +.|.++ +|++++|++|||+|++|+++    ++.+++|++|+||+ |.||++||+++||+++|+++++| +++||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 89999999999999998765    67789999999999 99999999999999999999999 7999999999


Q ss_pred             cccccccccCCC----CC-C----CCHHH--HHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHHcCCCCCCc
Q 018433          223 VTILPLLSQVKP----PC-S----FTQEE--TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAG  291 (356)
Q Consensus       223 ~~~vp~~s~~~v----~~-~----~~~~~--~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~  291 (356)
                       ++||+||++++    .+ +    +.+++  .++|.+++++++++|++.+  ||+|+||+|.++++++++|+++++ +..
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~~-~~~  243 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTP-EGT  243 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence             99999999988    32 1    23333  6789999999999999953  689999999999999999999642 225


Q ss_pred             EEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018433          292 VVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK  355 (356)
Q Consensus       292 v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~  355 (356)
                      ++|++ +++|+|  |+++|||+||++|++|++.++++ +|+++|+++|++|++.|+++++.+++.|+
T Consensus       244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~~~~~~  309 (309)
T PLN00135        244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELAYSCLS  309 (309)
T ss_pred             EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            89998 789999  58999999999999999999996 99999999999999999999999988764

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=3.5e-55  Score=418.85  Aligned_cols=271  Identities=21%  Similarity=0.271  Sum_probs=237.7

Q ss_pred             EEEEEeCCC----chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 018433           72 VLHLYDVVN----TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE  146 (356)
Q Consensus        72 el~L~D~~~----~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~  146 (356)
                      .|+|+|+++    ++|+++||.|+.+ .......  ++|++++++|||+||++||.|+++|++|.|++..|+++++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~   94 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE   94 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            899999977    6899999999972 1222322  46777899999999999999999999999999999999999999


Q ss_pred             HHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHHHHHHhCCCCCCCccc-EEecccCc
Q 018433          147 GIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGV  223 (356)
Q Consensus       147 ~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~-viG~hg~~  223 (356)
                      .|.+++| ++++|++|||+|++|+++.   ++.+|||++ +||+ |.||++||+++||++++++|++|+.+ ||||||+ 
T Consensus        95 ~i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~-  169 (313)
T TIGR01756        95 ALSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE-  169 (313)
T ss_pred             HHHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-
Confidence            9999995 5889999999999987642   578999999 9999 99999999999999999999999655 9999999 


Q ss_pred             ccccccccCCC--CC-C------CCHH-HHHHHHHHHhcchhHHHhhhccCCcccchHH-HHHHHHHHHHHcCCCCCCcE
Q 018433          224 TILPLLSQVKP--PC-S------FTQE-ETEYLTNRIQNGGTEVVEAKAGAGSATLSMA-YAAVKFADACLRGLRGDAGV  292 (356)
Q Consensus       224 ~~vp~~s~~~v--~~-~------~~~~-~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A-~a~~~li~ai~~~~~~~~~v  292 (356)
                      +++|+||++++  .+ +      ++++ .++++.+++++++++|++   +||+|+|+++ .++++++++|++|++. ..+
T Consensus       170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~~-~~i  245 (313)
T TIGR01756       170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTRP-GEV  245 (313)
T ss_pred             ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCCC-CeE
Confidence            99999999988  43 1      2332 367899999999999999   5689999977 6999999999997653 359


Q ss_pred             EEee-eec--CCC--CCccEEEEeEEEcCCceEEecc-CCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018433          293 VECA-FVA--SQV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYERIGLEKAKKELAGSIQKGISFS  354 (356)
Q Consensus       293 ~~~~-~~~--g~~--~~d~~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~  354 (356)
                      +|++ +++  |+|  ++|+++|+||++|++|++++++ + +|+++|+++|++|++.|+++.+.+++.|
T Consensus       246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~~~~~~  312 (313)
T TIGR01756       246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERETALKAL  312 (313)
T ss_pred             EEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9998 575  388  4799999999999999999999 6 9999999999999999999999988765

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=9e-52  Score=388.34  Aligned_cols=254  Identities=29%  Similarity=0.441  Sum_probs=230.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~--~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |+||||+|.+|+++++.|+..+  ...||+|+|+++  +++.++|++|..... ..+.. .++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence            6899998999999999999998  778999999987  789999999986432 33433 36788899999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHH
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  201 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~l  201 (356)
                      .|+++|++|.+++.+|++++++++++|+++||++|+|++|||+|.+|+++    ++.+|+|++|+||+|.+|+.|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764    67789999999999559999999999


Q ss_pred             HHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHH
Q 018433          202 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA  281 (356)
Q Consensus       202 a~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~a  281 (356)
                      |+++++++++|+++|||+||+ +++|+||+++                                     +|.++++++++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a  197 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS  197 (263)
T ss_pred             HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence            999999999999999999999 8999999754                                     67899999999


Q ss_pred             HHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          282 CLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       282 i~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      |++|++   .++|++ +++|+|  ++|++||+||++|++|+++++++ +|+++|+++|+++++.++..+
T Consensus       198 i~~~~~---~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~  262 (263)
T cd00650         198 LLNDEG---EILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL  262 (263)
T ss_pred             HHcCCC---EEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999854   588887 679998  68999999999999999999995 999999999999999999765

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.9e-49  Score=352.84  Aligned_cols=305  Identities=25%  Similarity=0.352  Sum_probs=273.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG  112 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~-----~~~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  112 (356)
                      +++.+|.|.||+|++|+++.+.++.+.     ....|+|+|+.+    ++|..|+|+|+.+ +.++....++|..++|+|
T Consensus         2 ~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~-PlL~~Vvattd~~~afkd   80 (332)
T KOG1496|consen    2 KEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCAL-PLLKGVVATTDEVEAFKD   80 (332)
T ss_pred             CCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhh-hHHHhhhcccChhhhhcc
Confidence            357899999999999999999998642     234899999987    7899999999985 555554457888999999


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEech
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  191 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~  191 (356)
                      .|+.|+.++.||++||+|.|++..|.+|++..+.++.+|+ |+.+||++.||++..+.++.   +.++.+|.+++-++|.
T Consensus        81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTR  157 (332)
T KOG1496|consen   81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTR  157 (332)
T ss_pred             CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhh
Confidence            9999999999999999999999999999999999999999 89999999999999988764   5678999999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCC---------CCCHHHH--HHHHHHHhcchhHHHh
Q 018433          192 LDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC---------SFTQEET--EYLTNRIQNGGTEVVE  259 (356)
Q Consensus       192 ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~---------~~~~~~~--~~l~~~v~~~~~~ii~  259 (356)
                      ||++|+..++|.++||+.++| ++++||+|+. +++|+..++++..         .+.|..|  .++...|++||..+|+
T Consensus       158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~  236 (332)
T KOG1496|consen  158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIK  236 (332)
T ss_pred             hchhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhh
Confidence            999999999999999999999 8999999998 9999999998742         1456666  5899999999999999


Q ss_pred             hhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 018433          260 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL  336 (356)
Q Consensus       260 ~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L  336 (356)
                      .|  |-++.+|.|.+++++++.|+.+++.+. +++.+ +.+|.|  |++..||+||++ ++|-|++++..+++++-++++
T Consensus       237 ar--k~SSA~SaA~aacDhi~dw~~gTpeG~-fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km  312 (332)
T KOG1496|consen  237 AR--KLSSAMSAAKAACDHIRDWWFGTPEGT-FVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKM  312 (332)
T ss_pred             hh--hhhhhhhHHHhHhhhhhheecCCCCcc-EEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhh
Confidence            76  567889999999999999999998654 55555 789999  899999999999 689999999889999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhc
Q 018433          337 EKAKKELAGSIQKGISFSK  355 (356)
Q Consensus       337 ~~sa~~l~~~~~~~~~~~~  355 (356)
                      ..++++|+++.+.+..+++
T Consensus       313 ~~t~~EL~eEkd~a~~~l~  331 (332)
T KOG1496|consen  313 DLTAKELKEEKDLAYSCLS  331 (332)
T ss_pred             hhhHHHHHHhHHHHHHhhc
Confidence            9999999999999988775

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=1.9e-33  Score=248.47  Aligned_cols=159  Identities=35%  Similarity=0.565  Sum_probs=144.9

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCC-----------CCCCHHHHHHHHHHHhcchhHHH
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-----------CSFTQEETEYLTNRIQNGGTEVV  258 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~-----------~~~~~~~~~~l~~~v~~~~~~ii  258 (356)
                      |.||++||++++|+++|++|++++++||||||+ ++||+||++++.           ..++++++++|.+++++++++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            689999999999999999999999999999999 999999999873           23667788999999999999999


Q ss_pred             hhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCc--cEEEEeEEEcCCceEEeccCCCCCHHHHH
Q 018433          259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TEL--PFFASKVRLGRQGAEEIFQLGPLNEYERI  334 (356)
Q Consensus       259 ~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d--~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  334 (356)
                      +.| + |+++||+|.++++++++|++|++   .++|++ +++|+| ..+  +|||+||++|++|++++++.++|+++|++
T Consensus        80 ~~k-~-g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  154 (174)
T PF02866_consen   80 KAK-G-GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE  154 (174)
T ss_dssp             HHH-S-SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred             eec-c-ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence            975 2 89999999999999999999985   588887 779999 334  99999999999999999994499999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 018433          335 GLEKAKKELAGSIQKGISFS  354 (356)
Q Consensus       335 ~L~~sa~~l~~~~~~~~~~~  354 (356)
                      +|++|++.|+++++++++|+
T Consensus       155 ~l~~sa~~l~~~i~~~~~f~  174 (174)
T PF02866_consen  155 KLKESAKELKKEIEKGLEFV  174 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999884

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=100.00  E-value=1.2e-31  Score=266.45  Aligned_cols=282  Identities=20%  Similarity=0.198  Sum_probs=193.9

Q ss_pred             CeEEEEcCCCchHHHHHHHH----HhCC---CCcEEEEEeCCC-ch----hHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433           45 FKVAILGAAGGIGQPLAMLM----KINP---LVSVLHLYDVVN-TP----GVTADISHMDTGAVVRGFLGQPQLENALTG  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l----~~~~---~~~el~L~D~~~-~~----g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  112 (356)
                      |||+|||| |+   +.++.|    +...   ..+||+|+|+++ ..    ..+..+.+.. ...+++. .|+|+++|++|
T Consensus         1 ~KI~iIGg-GS---~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~-~ttD~~~Al~g   74 (425)
T cd05197           1 VKIAIIGG-GS---SFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFE-KTMDLEDAIID   74 (425)
T ss_pred             CEEEEECC-ch---HhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCC
Confidence            69999999 84   455443    3332   358999999998 22    2233333332 3455554 36899999999


Q ss_pred             CcEEEEcCCC------------CCCCCC--------cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 018433          113 MDLVIIPAGV------------PRKPGM--------TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  172 (356)
Q Consensus       113 aDiVIi~ag~------------~~~~g~--------~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~  172 (356)
                      |||||.+..+            |.++|.        -......+|++++.++++.|+++||+||+||+|||+|++|+++ 
T Consensus        75 ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~-  153 (425)
T cd05197          75 ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV-  153 (425)
T ss_pred             CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH-
Confidence            9999996432            334432        2566788999999999999999999999999999999998754 


Q ss_pred             HHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-cccCcccccccccCCC-----------------
Q 018433          173 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAGVTILPLLSQVKP-----------------  234 (356)
Q Consensus       173 ~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~~~~vp~~s~~~v-----------------  234 (356)
                         ++.  +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| ||+.     .||..++                 
T Consensus       154 ---~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~  222 (425)
T cd05197         154 ---RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKS  222 (425)
T ss_pred             ---HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccC
Confidence               555  378899999877 8899999999999999999999999 9974     2222211                 


Q ss_pred             ---------------------------CCC------CCHHH----H-----------------HHHHHHHhcchh-HHHh
Q 018433          235 ---------------------------PCS------FTQEE----T-----------------EYLTNRIQNGGT-EVVE  259 (356)
Q Consensus       235 ---------------------------~~~------~~~~~----~-----------------~~l~~~v~~~~~-~ii~  259 (356)
                                                 +..      ..+..    .                 +++.+..+.... .-.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~  302 (425)
T cd05197         223 KDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVV  302 (425)
T ss_pred             ccccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChh
Confidence                                       000      00100    0                 011111110000 0000


Q ss_pred             hhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHH
Q 018433          260 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIG  335 (356)
Q Consensus       260 ~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~  335 (356)
                      ....++...|+  ..++++++||.+|++.   ++.++ .++|.+   |+|.++++||+++++|+.++.- ++|++..+++
T Consensus       303 ~~~~r~~~~~~--e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~~L  376 (425)
T cd05197         303 ELIKRGGRKYS--EAAIPLIRALLNDNGA---RFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVKGL  376 (425)
T ss_pred             hhhhcCCcccH--HHHHHHHHHHHcCCCe---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHHHH
Confidence            00011334454  7899999999998763   55555 678875   8999999999999999999877 5999998888


Q ss_pred             HHHHHHHHHHHHHHh
Q 018433          336 LEKAKKELAGSIQKG  350 (356)
Q Consensus       336 L~~sa~~l~~~~~~~  350 (356)
                      ++.-...-+-.++.+
T Consensus       377 i~~~~~~e~l~veAa  391 (425)
T cd05197         377 LRQRKMRERLALEAF  391 (425)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            877554444344443

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=4.1e-33  Score=238.05  Aligned_cols=139  Identities=38%  Similarity=0.602  Sum_probs=123.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      |||+||||+|.||+++++.|+++++++||+|+|+++  ++|+++||+|+...........+.+ +++++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence            799999999999999999999999999999999997  8999999999864332222222344 5899999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      |+++|++|.+++..|++++++++++|.+++|+++++++|||+|++|++    +++.+++|++|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCcCcccCcC
Confidence            999999999999999999999999999999999999999999998765    47889999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK15076 alpha-galactosidase; Provisional

Probab=100.00  E-value=2.4e-31  Score=265.11  Aligned_cols=288  Identities=17%  Similarity=0.154  Sum_probs=198.2

Q ss_pred             CCeEEEEcCCCchHHHHHH--HHH-hCCCC-cEEEEEeCCC--ch-hHHHHHhcCC--CCCeEEEEeCCCChhhhhCCCc
Q 018433           44 GFKVAILGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMD--TGAVVRGFLGQPQLENALTGMD  114 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~--~l~-~~~~~-~el~L~D~~~--~~-g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aD  114 (356)
                      ++||+|||| |++|++.++  .++ ..++. .||+|+|+++  ++ +.++ +.+..  .....++. .++|+++|++|||
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD   77 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD   77 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence            369999999 999999887  665 34454 4999999987  33 3333 33321  12334443 3679889999999


Q ss_pred             EEEEcCCCC-CCCC--------------CcHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHH
Q 018433          115 LVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA  171 (356)
Q Consensus       115 iVIi~ag~~-~~~g--------------~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~  171 (356)
                      |||++++.+ ++++              ++|.+.        +.+|++++++++++|+++||+||+|++|||+|++|+.+
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~  157 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM  157 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence            999999876 4434              456666        89999999999999999999999999999999998643


Q ss_pred             HHHHHHhCCCCCCCEEEec--hhhHHHHHHHHHHHhCCCCCCCcccEEe-cccC---------ccccccccc---C----
Q 018433          172 AEVFKKAGTYDPKKLLGVT--MLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPLLSQ---V----  232 (356)
Q Consensus       172 ~~~~~~~~~~~~~kviG~t--~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~---------~~~vp~~s~---~----  232 (356)
                          +   ++|+.||||+|  .+++.   +.+|+.+|+++++|++++.| ||..         ++.+|....   .    
T Consensus       158 ----~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~  227 (431)
T PRK15076        158 ----N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTR  227 (431)
T ss_pred             ----h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCch
Confidence                3   67889999997  45653   88999999999999999999 4443         133332110   0    


Q ss_pred             ---CC-----------CC-----------CC----CHHHHHHHH----HHHh------cchhHHH-hhhccCCc--ccch
Q 018433          233 ---KP-----------PC-----------SF----TQEETEYLT----NRIQ------NGGTEVV-EAKAGAGS--ATLS  270 (356)
Q Consensus       233 ---~v-----------~~-----------~~----~~~~~~~l~----~~v~------~~~~~ii-~~~~gkg~--t~~s  270 (356)
                         .+           +.           .+    .++.++++.    +..+      ....+.. +.+.++..  ..| 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  306 (431)
T PRK15076        228 CQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRS-  306 (431)
T ss_pred             hcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccc-
Confidence               00           00           11    222222221    1111      1111111 11111100  223 


Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 018433          271 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS  346 (356)
Q Consensus       271 ~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~  346 (356)
                       +..++++++||.+|.+   .++.++ .++|.+   |+|.++++||+++++|+.++.. ++|++..+++++.-...-+-.
T Consensus       307 -~e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~~~~~~e~l~  381 (431)
T PRK15076        307 -REYASTIIEAIETGEP---SVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNRTNINVQELT  381 (431)
T ss_pred             -hHHHHHHHHHHhcCCc---eEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHHHHHHHHHHH
Confidence             4789999999998876   355555 577875   8999999999999999999877 699999999887765554444


Q ss_pred             HHHh
Q 018433          347 IQKG  350 (356)
Q Consensus       347 ~~~~  350 (356)
                      ++.+
T Consensus       382 veAa  385 (431)
T PRK15076        382 VEAA  385 (431)
T ss_pred             HHHH
Confidence            4444

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=100.00  E-value=5.2e-31  Score=261.55  Aligned_cols=286  Identities=19%  Similarity=0.204  Sum_probs=194.8

Q ss_pred             CeEEEEcCCCchHH-HHHHHHHhC-C--CCcEEEEEeCC-C--ch---hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCc
Q 018433           45 FKVAILGAAGGIGQ-PLAMLMKIN-P--LVSVLHLYDVV-N--TP---GVTADISHMDTGAVVRGFLGQPQLENALTGMD  114 (356)
Q Consensus        45 ~KI~IIGa~G~vG~-~~a~~l~~~-~--~~~el~L~D~~-~--~~---g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aD  114 (356)
                      |||+|||| |++-. .+...|+.. .  ..+||+|+|++ +  +.   ..+.++.+.. ...+++. .|+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~-~t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVH-LTTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCC
Confidence            69999999 85411 112234442 2  35899999999 5  21   1222333322 2345544 3689999999999


Q ss_pred             EEEEcCCCCCCCCCcH--------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433          115 LVIIPAGVPRKPGMTR--------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  174 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r--------------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~  174 (356)
                      |||++++.++.+++++                    ...+.+|++++++++++|+++||+||+|++|||++++|+++   
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~---  154 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV---  154 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence            9999887665444433                    34578999999999999999999999999999999997654   


Q ss_pred             HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-cccC---------cccccc----------------
Q 018433          175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPL----------------  228 (356)
Q Consensus       175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~---------~~~vp~----------------  228 (356)
                       ++.+   +.||||+|+.+ .|+++.+|+.+|+++++|+++++| ||..         ++.+|.                
T Consensus       155 -~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~  229 (419)
T cd05296         155 -LRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLL  229 (419)
T ss_pred             -HHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccc
Confidence             5554   68999999875 799999999999999999999999 8865         234441                


Q ss_pred             cccC------CCCCC------CCHHHHH------------------HHHHHHhcc----hhHHHhhhccCCcccchHHHH
Q 018433          229 LSQV------KPPCS------FTQEETE------------------YLTNRIQNG----GTEVVEAKAGAGSATLSMAYA  274 (356)
Q Consensus       229 ~s~~------~v~~~------~~~~~~~------------------~l~~~v~~~----~~~ii~~~~gkg~t~~s~A~a  274 (356)
                      |+..      .++..      +.++.++                  ++.+.....    ..+-+.   .++.+.||  ..
T Consensus       230 ~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~---~r~g~~y~--e~  304 (419)
T cd05296         230 FGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELE---KRGGAGYS--EA  304 (419)
T ss_pred             hHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhH---hhcCcchH--HH
Confidence            1110      00110      1121111                  111111111    011111   22344455  78


Q ss_pred             HHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018433          275 AVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG  350 (356)
Q Consensus       275 ~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~  350 (356)
                      ++++++||++|++.   ++.++ .++|.+   |+|.++++||.++++|+.++.. ++|++..++++..-...=+-.++.+
T Consensus       305 a~~ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~~~e~l~veAa  380 (419)
T cd05296         305 ALALISAIYNDKGD---IHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVKAYERLTIEAA  380 (419)
T ss_pred             HHHHHHHHhcCCCc---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988753   55555 678875   8999999999999999999877 6999999988766544433334433

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.97  E-value=8.4e-29  Score=246.61  Aligned_cols=289  Identities=19%  Similarity=0.216  Sum_probs=192.7

Q ss_pred             CeEEEEcCCCchHHHHHH----HHHhC--CC-CcEEEEEeCCC-ch----hHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433           45 FKVAILGAAGGIGQPLAM----LMKIN--PL-VSVLHLYDVVN-TP----GVTADISHMDTGAVVRGFLGQPQLENALTG  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~----~l~~~--~~-~~el~L~D~~~-~~----g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  112 (356)
                      |||+|||| |+   +.++    .|+..  .+ .+||+|+|+++ ..    ..+..+.+.. ...+++. .|+|+++|++|
T Consensus         1 ~KI~iIGa-GS---~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~-~Ttdr~eAl~g   74 (437)
T cd05298           1 FKIVIAGG-GS---TYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFV-YTTDPEEAFTD   74 (437)
T ss_pred             CeEEEECC-cH---HHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EECCHHHHhCC
Confidence            79999999 74   3444    34444  23 58999999998 22    2233333322 2355554 36899999999


Q ss_pred             CcEEEEcCCC------------CCCCCC--------cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 018433          113 MDLVIIPAGV------------PRKPGM--------TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  172 (356)
Q Consensus       113 aDiVIi~ag~------------~~~~g~--------~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~  172 (356)
                      |||||.+..+            |.++|.        -....+.||++++.++++.|+++||+||+|++|||++++|+++ 
T Consensus        75 ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~-  153 (437)
T cd05298          75 ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL-  153 (437)
T ss_pred             CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH-
Confidence            9999996432            334442        2466789999999999999999999999999999999998654 


Q ss_pred             HHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-cccC----------cccccccc----c------
Q 018433          173 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG----------VTILPLLS----Q------  231 (356)
Q Consensus       173 ~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~----------~~~vp~~s----~------  231 (356)
                         ++.  +|+.||||+|+... .++..+|+.+|+++++++..+.| ||..          ++.+|...    .      
T Consensus       154 ---~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~  227 (437)
T cd05298         154 ---RRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPP  227 (437)
T ss_pred             ---HHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCcc
Confidence               444  77899999998776 47899999999999999999988 3322          13333211    0      


Q ss_pred             ----C---C-------------------CCCC-----C-CHHHHHHHHH-------HHhcchhHHHhhh-----ccC--C
Q 018433          232 ----V---K-------------------PPCS-----F-TQEETEYLTN-------RIQNGGTEVVEAK-----AGA--G  265 (356)
Q Consensus       232 ----~---~-------------------v~~~-----~-~~~~~~~l~~-------~v~~~~~~ii~~~-----~gk--g  265 (356)
                          .   .                   +++.     + .++..+++..       .+.+...+.++..     ..+  .
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~  307 (437)
T cd05298         228 DSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEG  307 (437)
T ss_pred             cccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhh
Confidence                0   0                   1110     1 1111111110       0011111111000     000  0


Q ss_pred             cccc--hHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 018433          266 SATL--SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA  339 (356)
Q Consensus       266 ~t~~--s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~s  339 (356)
                      ....  ..|.++++++++|++|++   .+++++ .++|.|   |+|+++|+||+||++|+.++.- ++|++...++++.-
T Consensus       308 ~~~~~~~ya~~a~~ii~aI~~d~~---~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~l~~~~  383 (437)
T cd05298         308 STFHVDVHGEYIVDLAASIAYNTK---ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKGLMEQQ  383 (437)
T ss_pred             hhhhccchHHHHHHHHHHHHcCCC---eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHHHHHHH
Confidence            0110  135889999999999875   488887 678887   7899999999999999999877 69999999987766


Q ss_pred             HHHHHHHHHHh
Q 018433          340 KKELAGSIQKG  350 (356)
Q Consensus       340 a~~l~~~~~~~  350 (356)
                      ...-+-.++.+
T Consensus       384 ~~~e~l~veAa  394 (437)
T cd05298         384 VAYEKLLVEAY  394 (437)
T ss_pred             HHHHHHHHHHH
Confidence            55544444444

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.96  E-value=7.1e-28  Score=235.62  Aligned_cols=292  Identities=21%  Similarity=0.254  Sum_probs=193.4

Q ss_pred             CCCeEEEEcCCCchHHHHHH--HHHhCC--CCcEEEEEeCCC-chhHH----HHHhcCCCCCeEEEEeCCCChhhhhCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-TPGVT----ADISHMDTGAVVRGFLGQPQLENALTGM  113 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~--~l~~~~--~~~el~L~D~~~-~~g~~----~dl~~~~~~~~v~~~~~t~d~~~al~~a  113 (356)
                      +++||+|||| |+++..-..  .|...+  ...||+|+|+++ .....    ..+.+.. ...+++.. |+|+++||+||
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~-ttd~~eAl~gA   78 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEA-TTDRREALEGA   78 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ecCHHHHhcCC
Confidence            4679999999 855544321  233333  357999999998 32222    2233222 23466543 68999999999


Q ss_pred             cEEEEcCC------------CCCCCCCc--------HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH
Q 018433          114 DLVIIPAG------------VPRKPGMT--------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  173 (356)
Q Consensus       114 DiVIi~ag------------~~~~~g~~--------r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~  173 (356)
                      |||+.+..            .|.|+|..        ......|+++++.+|++.|+++||+||+||+|||+.++|.+   
T Consensus        79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeA---  155 (442)
T COG1486          79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEA---  155 (442)
T ss_pred             CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHH---
Confidence            99999642            35565532        45567899999999999999999999999999999999764   


Q ss_pred             HHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCC-CCCcccEEe-cccC---------ccccccccc-----------
Q 018433          174 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-GHAG---------VTILPLLSQ-----------  231 (356)
Q Consensus       174 ~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~-~~v~~~viG-~hg~---------~~~vp~~s~-----------  231 (356)
                       +++.  +|..|++|+|+... -....+|+.||+++ ++++..+.| ||..         .+.+|.+..           
T Consensus       156 -v~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~  231 (442)
T COG1486         156 -VRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEP  231 (442)
T ss_pred             -HHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCcc
Confidence             4554  44459999998765 46899999999975 999999999 4432         122221110           


Q ss_pred             --------CC--------C---CCC------CCHHH----HHHH------HHHHhcchhHHHhh------------hccC
Q 018433          232 --------VK--------P---PCS------FTQEE----TEYL------TNRIQNGGTEVVEA------------KAGA  264 (356)
Q Consensus       232 --------~~--------v---~~~------~~~~~----~~~l------~~~v~~~~~~ii~~------------~~gk  264 (356)
                              ..        +   ++.      ++...    .+++      .+.|.++..+.++.            ...+
T Consensus       232 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~  311 (442)
T COG1486         232 ENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKR  311 (442)
T ss_pred             ccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhc
Confidence                    00        0   000      00000    0000      01111111111111            0112


Q ss_pred             Ccc--cchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 018433          265 GSA--TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  338 (356)
Q Consensus       265 g~t--~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~  338 (356)
                      +.+  .|+  .++++++.||++|++.   ++.++ .++|.+   |+|.++++||+++++|++++.. ++|+++-+++++.
T Consensus       312 ~~~~~~~~--e~a~~ii~Ai~~~~~~---~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~~~  385 (442)
T COG1486         312 IGAGKYSS--EYASNIINAIENNKPS---RIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLMHT  385 (442)
T ss_pred             CCcccccH--HHHHHHHHHHhcCCce---EEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHHHH
Confidence            232  444  7899999999999763   55565 578985   8999999999999999999888 6999999999888


Q ss_pred             HHHHHHHHHHHh
Q 018433          339 AKKELAGSIQKG  350 (356)
Q Consensus       339 sa~~l~~~~~~~  350 (356)
                      ....-+-.++.+
T Consensus       386 ~i~~e~l~veA~  397 (442)
T COG1486         386 NINVEELTVEAA  397 (442)
T ss_pred             HHHHHHHHHHHH
Confidence            766655445444

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.96  E-value=4.4e-27  Score=234.64  Aligned_cols=288  Identities=18%  Similarity=0.151  Sum_probs=197.1

Q ss_pred             CeEEEEcCCCchHHHHHH--HHHhC-CC-CcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEeCCCChhhhhCCCcEE
Q 018433           45 FKVAILGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~--~l~~~-~~-~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      +||+|||| |++|++.+.  .++.. .. ..+|+|+|+++  +.....++.+..  .....++. .++|+++|++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence            59999999 999999877  45533 33 34999999988  444444444331  11223333 357999999999999


Q ss_pred             EEcCCCCCCCCCcH----------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433          117 IIPAGVPRKPGMTR----------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  174 (356)
Q Consensus       117 Ii~ag~~~~~g~~r----------------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~  174 (356)
                      |++++.+..++.++                      .....+|++++.++++.++++||++|++++|||++++|+++   
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~---  155 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL---  155 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence            99987544433333                      56678999999999999999999999999999999997654   


Q ss_pred             HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-cccC---------cccccccc-----------cCC
Q 018433          175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPLLS-----------QVK  233 (356)
Q Consensus       175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~---------~~~vp~~s-----------~~~  233 (356)
                       ++.++   .|++|+|+. +.+++..+|+.+|+++++|+++++| ||..         ++.+|...           ...
T Consensus       156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~  230 (423)
T cd05297         156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLS  230 (423)
T ss_pred             -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcc
Confidence             56654   799999865 6789999999999999999999999 4433         23344211           111


Q ss_pred             -C-----------CC-------C------CCHHHHHH------------------HHHHHhcchhHHHhh--hccCCccc
Q 018433          234 -P-----------PC-------S------FTQEETEY------------------LTNRIQNGGTEVVEA--KAGAGSAT  268 (356)
Q Consensus       234 -v-----------~~-------~------~~~~~~~~------------------l~~~v~~~~~~ii~~--~~gkg~t~  268 (356)
                       +           +.       .      ..++....                  +........  ..+.  ....+...
T Consensus       231 ~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  308 (423)
T cd05297         231 PVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLI--LAEIDKEELDPVKR  308 (423)
T ss_pred             cchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhc--cchhcchhcccccc
Confidence             1           00       0      11111111                  111110000  0000  00011222


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433          269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  344 (356)
Q Consensus       269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~  344 (356)
                      |  +..++++++||.+|.+   .++.++ .++|.+   |+|.++++||+|+++|+.++.. ++|++..++++..-...-+
T Consensus       309 ~--~e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~~~~~~e~  382 (423)
T cd05297         309 S--GEYASPIIEALVTGKP---RRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIRPRINVQE  382 (423)
T ss_pred             c--hHHHHHHHHHHhcCCc---eEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHHHHHHHHH
Confidence            3  3779999999999865   355565 678875   8999999999999999999977 6999999998877655544


Q ss_pred             HHHHHh
Q 018433          345 GSIQKG  350 (356)
Q Consensus       345 ~~~~~~  350 (356)
                      -.++.+
T Consensus       383 l~veA~  388 (423)
T cd05297         383 LAVEAA  388 (423)
T ss_pred             HHHHHH
Confidence            444444

linked to 3D####ucture

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.87  E-value=2.7e-21  Score=170.76  Aligned_cols=152  Identities=21%  Similarity=0.247  Sum_probs=107.1

Q ss_pred             eEEEEcCCCchHHHHHH--HHHhCC--CCcEEEEEeCCC-c----hhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEE
Q 018433           46 KVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-T----PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~--~l~~~~--~~~el~L~D~~~-~----~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      ||+|||| |++-.....  .+...+  ..+||+|+|+++ .    ...+..+.+.. ...++.. .|+|+++|++|||||
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~-~ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVE-ATTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEE-EESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEE-EeCCHHHHhCCCCEE
Confidence            8999999 877665432  334433  246999999998 2    22233333322 2344443 368999999999999


Q ss_pred             EEcCC------------CCCCCCCc----------HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433          117 IIPAG------------VPRKPGMT----------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  174 (356)
Q Consensus       117 Ii~ag------------~~~~~g~~----------r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~  174 (356)
                      |.+..            .|.++|..          ......|+++.+.++++.|+++|||||+||+|||+.++|..+   
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~---  154 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL---  154 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence            99754            35555522          466789999999999999999999999999999999997654   


Q ss_pred             HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCC
Q 018433          175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGL  207 (356)
Q Consensus       175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v  207 (356)
                       .+.  +|..|++|+|+... -+.+.+|+.||+
T Consensus       155 -~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~  183 (183)
T PF02056_consen  155 -SRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM  183 (183)
T ss_dssp             -HHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred             -HHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence             444  44589999998775 478899999874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.86  E-value=1.3e-07  Score=92.14  Aligned_cols=114  Identities=18%  Similarity=0.288  Sum_probs=82.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--------------hHHHHHhcC-CCCCeEEEEeCCCChhhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--------------GVTADISHM-DTGAVVRGFLGQPQLENA  109 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--------------g~~~dl~~~-~~~~~v~~~~~t~d~~~a  109 (356)
                      |||+|+|. |+||...+..|++.|+  +++++|+++.+              |. .+|.+. ....+++.   |+|+++|
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgL-e~ll~~~~~~gRl~f---Ttd~~~a   73 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGL-EELLKENLASGRLRF---TTDYEEA   73 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccH-HHHHHhccccCcEEE---EcCHHHH
Confidence            89999999 9999999999999998  99999998711              11 112211 11123553   6899999


Q ss_pred             hCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHHH
Q 018433          110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIA  171 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~t~~~  171 (356)
                      ++++|+++|+.|.|.++.-      .-++..+...++.|.++.+...++|.  |-|++....+-
T Consensus        74 ~~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~  131 (414)
T COG1004          74 VKDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR  131 (414)
T ss_pred             HhcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence            9999999999999876532      23456678888888888776444444  68888765543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.75  E-value=2.8e-08  Score=88.28  Aligned_cols=117  Identities=26%  Similarity=0.373  Sum_probs=76.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch---hHHHH-Hh---c-CCC--------CCeEEEEeCCCChh
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP---GVTAD-IS---H-MDT--------GAVVRGFLGQPQLE  107 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~---g~~~d-l~---~-~~~--------~~~v~~~~~t~d~~  107 (356)
                      ||+|||| |.+|..+|..++..|+  +++|+|.++  +.   ....+ +.   + ...        ..+++.   ++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence            7999999 9999999999999998  999999987  11   11111 11   1 110        123553   46886


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCE
Q 018433          108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  186 (356)
Q Consensus       108 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kv  186 (356)
                      ++ .+||+||.+.              .++.++.+++...+.+.+ |+++  +.||.......   ++. .... .|+|+
T Consensus        75 ~~-~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~i--lasnTSsl~i~---~la-~~~~-~p~R~  132 (180)
T PF02737_consen   75 EA-VDADLVIEAI--------------PEDLELKQELFAELDEICPPDTI--LASNTSSLSIS---ELA-AALS-RPERF  132 (180)
T ss_dssp             GG-CTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSE--EEE--SSS-HH---HHH-TTSS-TGGGE
T ss_pred             HH-hhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCce--EEecCCCCCHH---HHH-hccC-cCceE
Confidence            55 4999999985              567888999999999999 6774  47887765542   222 2222 36688


Q ss_pred             EEec
Q 018433          187 LGVT  190 (356)
Q Consensus       187 iG~t  190 (356)
                      +|+-
T Consensus       133 ig~H  136 (180)
T PF02737_consen  133 IGMH  136 (180)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8874

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.72  E-value=6.7e-08  Score=92.28  Aligned_cols=122  Identities=23%  Similarity=0.312  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--HHH-Hhc---CC--C----CCeEEEEeCCCChhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TAD-ISH---MD--T----GAVVRGFLGQPQLEN  108 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~--~~d-l~~---~~--~----~~~v~~~~~t~d~~~  108 (356)
                      .+||+|||| |.+|+.+|..++..|+  +|+|+|+++  + .+.  ... +..   ..  .    ...+..+..++|+ .
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence            469999999 9999999999999777  999999986  1 111  111 111   10  0    0112222335676 5


Q ss_pred             hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEE
Q 018433          109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  187 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kvi  187 (356)
                      ++++||+||.++              .+|.++-+++...+.+++ |+++  ..||.+.+.-.-+++.    + -.|+|++
T Consensus        79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aI--lASNTSsl~it~ia~~----~-~rper~i  137 (307)
T COG1250          79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAI--LASNTSSLSITELAEA----L-KRPERFI  137 (307)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcE--EeeccCCCCHHHHHHH----h-CCchhEE
Confidence            899999999984              788999999999999999 6884  4999998765433322    2 3367888


Q ss_pred             Eec
Q 018433          188 GVT  190 (356)
Q Consensus       188 G~t  190 (356)
                      |+.
T Consensus       138 G~H  140 (307)
T COG1250         138 GLH  140 (307)
T ss_pred             EEe
Confidence            873

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.57  E-value=7.2e-07  Score=86.22  Aligned_cols=118  Identities=16%  Similarity=0.154  Sum_probs=81.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhH-------HHH-HhcCC-----CCCeEEEEeCCCChhhhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGV-------TAD-ISHMD-----TGAVVRGFLGQPQLENAL  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~-------~~d-l~~~~-----~~~~v~~~~~t~d~~~al  110 (356)
                      .||+|||+ |.+|+.+|..++..|+  +|+|+|+++ ....       .++ +....     ...+++.   ++++++++
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~av   81 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEACV   81 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHHh
Confidence            58999999 9999999999999998  999999986 1111       011 11110     0122332   46788899


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      ++||+|+.+.              .+|..+-+++...+.+++| ++  |+.||.+.....-+   . .... .|+|++|+
T Consensus        82 ~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~l---a-~~~~-~p~R~~g~  140 (321)
T PRK07066         82 ADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPTDF---Y-ARAT-HPERCVVG  140 (321)
T ss_pred             cCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHH---H-HhcC-CcccEEEE
Confidence            9999999984              4667778888899999995 55  56888887654322   2 2222 25678776

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.54  E-value=1.8e-07  Score=83.44  Aligned_cols=133  Identities=19%  Similarity=0.268  Sum_probs=76.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----------------CCCeEEEEeCCCChhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN  108 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~t~d~~~  108 (356)
                      |||+|||. |+||..+|..|+..|+  +++-+|+++.  .+..++...                ...+++.   ++|+++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~--~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEE--KVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEE   72 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HH--HHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChH--HHHHHhhccccccccchhhhhccccccccchh---hhhhhh
Confidence            79999999 9999999999999998  9999999861  111122211                1234554   468888


Q ss_pred             hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHHhCCCCCCCE
Q 018433          109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKL  186 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~~~~~~~~~~~~~~~kv  186 (356)
                      ++++||++|++.+.|...+.      .-+...+...++.|.++. ++.+|++= |-|.++.-.++..++.+.++..  .=
T Consensus        73 ai~~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~  144 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--ED  144 (185)
T ss_dssp             HHHH-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TC
T ss_pred             hhhccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cC
Confidence            89999999999988765532      112333555666666555 34444433 5888877655555666655432  33


Q ss_pred             EEechhh
Q 018433          187 LGVTMLD  193 (356)
Q Consensus       187 iG~t~ld  193 (356)
                      |+++..+
T Consensus       145 f~la~~P  151 (185)
T PF03721_consen  145 FHLAYSP  151 (185)
T ss_dssp             EEEEE--
T ss_pred             CeEEECC
Confidence            4554333

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.51  E-value=6.1e-07  Score=95.80  Aligned_cols=118  Identities=18%  Similarity=0.226  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--HHH-H----hcCCC--------CCeEEEEeCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TAD-I----SHMDT--------GAVVRGFLGQPQ  105 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~--~~d-l----~~~~~--------~~~v~~~~~t~d  105 (356)
                      ..||+|||| |.+|+.+|..++..|+  +|+|+|+++  + .+.  ..+ +    .....        ..+++.   ++|
T Consensus       335 i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~  408 (737)
T TIGR02441       335 VKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TLD  408 (737)
T ss_pred             ccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            468999999 9999999999999998  999999987  1 111  111 1    11100        123443   467


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      + +++++||+||.+.              .+|.++.+++...+.+++ |+++  +.||...+-..-++    .... .|+
T Consensus       409 ~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~i--lasNTSsl~i~~la----~~~~-~p~  466 (737)
T TIGR02441       409 Y-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCI--IASNTSALPIKDIA----AVSS-RPE  466 (737)
T ss_pred             H-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcE--EEEcCCCCCHHHHH----hhcC-Ccc
Confidence            7 6899999999984              688999999999999999 5664  48999886653332    2222 257


Q ss_pred             CEEEe
Q 018433          185 KLLGV  189 (356)
Q Consensus       185 kviG~  189 (356)
                      |++|+
T Consensus       467 r~ig~  471 (737)
T TIGR02441       467 KVIGM  471 (737)
T ss_pred             ceEEE
Confidence            88886

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.50  E-value=5.7e-07  Score=95.79  Aligned_cols=120  Identities=18%  Similarity=0.234  Sum_probs=85.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--HHHH-----hcCCC--------CCeEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADI-----SHMDT--------GAVVRGFLGQP  104 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~--~~dl-----~~~~~--------~~~v~~~~~t~  104 (356)
                      +..||+|||| |.+|..+|..++..|+  +|+|+|+++ .  .+.  +.++     .+...        ..+++.   ++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~  385 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL  385 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence            3468999999 9999999999999998  999999987 1  111  1111     11100        123433   46


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      |+ +++++||+||.+.              .+++++.+++...+.+++ |+++  +.||.+.+...-++    .... .|
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~i--lasnTS~l~i~~ia----~~~~-~p  443 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAI--LASNTSTISISLLA----KALK-RP  443 (714)
T ss_pred             CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHH----hhcC-Cc
Confidence            76 7799999999994              678899999999999999 5764  48999886653322    2222 36


Q ss_pred             CCEEEec
Q 018433          184 KKLLGVT  190 (356)
Q Consensus       184 ~kviG~t  190 (356)
                      +|++|+.
T Consensus       444 ~r~ig~H  450 (714)
T TIGR02437       444 ENFCGMH  450 (714)
T ss_pred             ccEEEEe
Confidence            7898873

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.48  E-value=1.4e-06  Score=82.89  Aligned_cols=119  Identities=20%  Similarity=0.319  Sum_probs=76.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHH----Hhc-----CCC---------CCeEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD----ISH-----MDT---------GAVVRGFLGQP  104 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~d----l~~-----~~~---------~~~v~~~~~t~  104 (356)
                      .+||+|||+ |.+|+.+|..++..|.  +|+++|+++ ....+.+    +.+     ...         ...++.   ++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence            359999999 9999999999998887  999999986 1111111    111     000         012332   46


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      |+++++++||+||++.              ..+.+..+++...+.++++ +++  +++|.......   ++. .... .+
T Consensus        77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~i--i~sntSt~~~~---~~~-~~~~-~~  135 (287)
T PRK08293         77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKTI--FATNSSTLLPS---QFA-EATG-RP  135 (287)
T ss_pred             CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCCE--EEECcccCCHH---HHH-hhcC-Cc
Confidence            8888899999999985              2445667777788888875 553  35666654432   222 2222 24


Q ss_pred             CCEEEe
Q 018433          184 KKLLGV  189 (356)
Q Consensus       184 ~kviG~  189 (356)
                      .|++|+
T Consensus       136 ~r~vg~  141 (287)
T PRK08293        136 EKFLAL  141 (287)
T ss_pred             ccEEEE
Confidence            578876

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.48  E-value=2.9e-06  Score=77.61  Aligned_cols=128  Identities=18%  Similarity=0.111  Sum_probs=75.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||++|.+|++++..|+..+.  +|.++|+++  ......++.+...  ....+...  ++..++++++|+||++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~--~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG--ADNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE--eChHHHHhcCCEEEEEC
Confidence            7999998449999999999998886  999999876  2333333322110  11112211  23467899999999985


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc-----------HHHHHHHHHHhCCCCC-CCEEE
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----------VPIAAEVFKKAGTYDP-KKLLG  188 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~-----------t~~~~~~~~~~~~~~~-~kviG  188 (356)
                      -.                ..+.++++.+...-++..||-++||.+.-           ....++.+++.  +|+ .+|+.
T Consensus        77 p~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~--~p~~~~VVk  138 (219)
T TIGR01915        77 PW----------------DHVLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAAL--LPETSRVVA  138 (219)
T ss_pred             CH----------------HHHHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHh--CCCCCeEee
Confidence            21                11233334444333445777889998751           00112334443  566 67877


Q ss_pred             e-chhhH
Q 018433          189 V-TMLDV  194 (356)
Q Consensus       189 ~-t~ld~  194 (356)
                      . .++..
T Consensus       139 a~~~~~a  145 (219)
T TIGR01915       139 AFHNLSA  145 (219)
T ss_pred             ccccCCH
Confidence            6 55553

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.47  E-value=3.7e-06  Score=89.45  Aligned_cols=119  Identities=18%  Similarity=0.288  Sum_probs=83.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--c-hhH--HH-HHhc----CCC--------CCeEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--T-PGV--TA-DISH----MDT--------GAVVRGFLGQP  104 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~--~-~g~--~~-dl~~----~~~--------~~~v~~~~~t~  104 (356)
                      ..||+|||| |.+|+.+|..++. .|+  +|+|+|+++  + .+.  .. .+..    ...        ...++.   ++
T Consensus       304 i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~  377 (699)
T TIGR02440       304 IKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---TT  377 (699)
T ss_pred             ccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---eC
Confidence            368999999 9999999999884 788  999999987  1 111  11 1111    100        123443   46


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      |+ ++++|||+||.+.              .++.++.+++...+.+++| ++  |+.||.......-+++    .. -.|
T Consensus       378 ~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la~----~~-~~p  435 (699)
T TIGR02440       378 DY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIAA----AA-SRP  435 (699)
T ss_pred             Ch-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHHH----hc-CCc
Confidence            77 6899999999984              5778999999999999995 66  4489998866533322    22 236


Q ss_pred             CCEEEec
Q 018433          184 KKLLGVT  190 (356)
Q Consensus       184 ~kviG~t  190 (356)
                      +|++|+.
T Consensus       436 ~r~~g~H  442 (699)
T TIGR02440       436 ENVIGLH  442 (699)
T ss_pred             ccEEEEe
Confidence            7888863

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.46  E-value=2.3e-06  Score=91.22  Aligned_cols=117  Identities=19%  Similarity=0.240  Sum_probs=83.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--HH----HH-hcCCC--------CCeEEEEeCCCCh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TA----DI-SHMDT--------GAVVRGFLGQPQL  106 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~--~~----dl-~~~~~--------~~~v~~~~~t~d~  106 (356)
                      .||+|||| |.+|..+|..++..|+  +|+|+|+++  + .+.  ..    .+ .+...        ..+++.   ++|+
T Consensus       314 ~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~~  387 (715)
T PRK11730        314 KQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TLDY  387 (715)
T ss_pred             ceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eCCH
Confidence            58999999 9999999999999998  999999987  1 111  11    11 11100        123443   4677


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433          107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k  185 (356)
                       +++++||+||.+.              .+++++.+++...+.+++| ++  |+.||.+.+-..-++   . ... .|+|
T Consensus       388 -~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la---~-~~~-~p~r  445 (715)
T PRK11730        388 -AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLLA---K-ALK-RPEN  445 (715)
T ss_pred             -HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHH---h-hcC-CCcc
Confidence             7799999999994              6788999999999999995 66  448999886643322   2 222 3678


Q ss_pred             EEEe
Q 018433          186 LLGV  189 (356)
Q Consensus       186 viG~  189 (356)
                      ++|+
T Consensus       446 ~~g~  449 (715)
T PRK11730        446 FCGM  449 (715)
T ss_pred             EEEE
Confidence            9887

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.44  E-value=1.6e-06  Score=82.53  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=80.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh-H--H---HH-HhcCC-C--------CCeEEEEeCCCCh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG-V--T---AD-ISHMD-T--------GAVVRGFLGQPQL  106 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g-~--~---~d-l~~~~-~--------~~~v~~~~~t~d~  106 (356)
                      .||+|||+ |.+|..+|..++..|+  +++|+|+++  +.. .  .   ++ +.+.. .        ..+++.   ++|+
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~~~   79 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TTDL   79 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eCCH
Confidence            48999999 9999999999999998  999999987  111 1  1   11 11111 0        123333   4677


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                       +++++||+||.+.              .++.++-+++...+.++| + ++  |++||........++    ..... ++
T Consensus        80 -~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la----~~~~~-~~  137 (286)
T PRK07819         80 -GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLA----AATKR-PG  137 (286)
T ss_pred             -HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----hhcCC-Cc
Confidence             7799999999984              577888888889999997 4 55  347777775543332    22333 56


Q ss_pred             CEEEec
Q 018433          185 KLLGVT  190 (356)
Q Consensus       185 kviG~t  190 (356)
                      |++|+.
T Consensus       138 r~~g~h  143 (286)
T PRK07819        138 RVLGLH  143 (286)
T ss_pred             cEEEEe
Confidence            787774

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.40  E-value=2.7e-06  Score=90.70  Aligned_cols=119  Identities=19%  Similarity=0.320  Sum_probs=84.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC--c-hh--HHHHHh-----cCCC--------CCeEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN--T-PG--VTADIS-----HMDT--------GAVVRGFLGQP  104 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~--~-~g--~~~dl~-----~~~~--------~~~v~~~~~t~  104 (356)
                      ..||+|||| |.+|+.+|..++ ..|+  +|+|+|.++  + .+  ...+..     ....        ..+++.   ++
T Consensus       309 i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~  382 (708)
T PRK11154        309 VNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---TT  382 (708)
T ss_pred             ccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---eC
Confidence            468999999 999999999998 7788  999999986  1 11  111111     1100        123443   46


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      |+ +++++||+||.+.              .+|.++.+++...+.+++ |+++  +.||...+...-++    .... .|
T Consensus       383 ~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~i--lasnTS~l~i~~la----~~~~-~p  440 (708)
T PRK11154        383 DY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTI--FASNTSSLPIGQIA----AAAA-RP  440 (708)
T ss_pred             Ch-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHH----HhcC-cc
Confidence            77 7899999999994              688999999999999999 6774  48999886653332    2222 35


Q ss_pred             CCEEEec
Q 018433          184 KKLLGVT  190 (356)
Q Consensus       184 ~kviG~t  190 (356)
                      +|++|+-
T Consensus       441 ~r~ig~H  447 (708)
T PRK11154        441 EQVIGLH  447 (708)
T ss_pred             cceEEEe
Confidence            6888873

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.37  E-value=5.7e-07  Score=81.24  Aligned_cols=122  Identities=21%  Similarity=0.334  Sum_probs=87.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-----hhHHHHHhcCCC-----------------CCeEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMDT-----------------GAVVRG   99 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~-----~g~~~dl~~~~~-----------------~~~v~~   99 (356)
                      +...|+|||| |.+|+.+|...+..|+  .++|+|.++ +     ++....+.+...                 ..+++ 
T Consensus        10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~-   85 (298)
T KOG2304|consen   10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK-   85 (298)
T ss_pred             cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH-
Confidence            4558999999 9999999999999999  999999988 1     222222222210                 01222 


Q ss_pred             EeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          100 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       100 ~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                        .++|.+.+++|||+||.+              +.+|+.+-+++.+.+.+.|+..- |..||.....-.   .+. ...
T Consensus        86 --~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~-il~tNTSSl~lt---~ia-~~~  144 (298)
T KOG2304|consen   86 --TSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSST-ILATNTSSLSLT---DIA-SAT  144 (298)
T ss_pred             --HcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccce-EEeecccceeHH---HHH-hhc
Confidence              257888999999999887              58999999999999999996433 348898876532   221 222


Q ss_pred             CCCCCCEEEec
Q 018433          180 TYDPKKLLGVT  190 (356)
Q Consensus       180 ~~~~~kviG~t  190 (356)
                       -++.|+.|+.
T Consensus       145 -~~~srf~GlH  154 (298)
T KOG2304|consen  145 -QRPSRFAGLH  154 (298)
T ss_pred             -cChhhhceee
Confidence             3467899984

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.34  E-value=8.3e-06  Score=82.81  Aligned_cols=124  Identities=19%  Similarity=0.249  Sum_probs=90.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC----CChhhhhCC--Cc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ----PQLENALTG--MD  114 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~--aD  114 (356)
                      ..+.|.|+||+|++|+.++..++..++ .+|+++|.++  ......++.+.....+++.+.++    .-.+.++++  .|
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd  327 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD  327 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence            346899999999999999999988754 5999999998  44445556553212233332221    234567888  99


Q ss_pred             EEEEcCCCCCCCCCc--HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCCcc
Q 018433          115 LVIIPAGVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNST  167 (356)
Q Consensus       115 iVIi~ag~~~~~g~~--r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t----NPv~~~  167 (356)
                      +|+++|....-|-++  -.+-+..|+-..++++++..++.=+..|++.|    ||.++|
T Consensus       328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm  386 (588)
T COG1086         328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM  386 (588)
T ss_pred             eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh
Confidence            999999876555443  45678999999999999999888777776665    666655

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.33  E-value=8.7e-06  Score=77.20  Aligned_cols=118  Identities=21%  Similarity=0.365  Sum_probs=78.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH-----H-HHHhcCC-C--------CCeEEEEeCCCCh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV-----T-ADISHMD-T--------GAVVRGFLGQPQL  106 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~-----~-~dl~~~~-~--------~~~v~~~~~t~d~  106 (356)
                      .||+|||+ |.+|..++..++..++  +|+++|+++  + .+.     . .++.+.. .        ...++.   ++|+
T Consensus         4 ~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~~   77 (282)
T PRK05808          4 QKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTDL   77 (282)
T ss_pred             cEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence            48999999 9999999999999887  999999987  2 111     0 1111111 0        013332   4576


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433          107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k  185 (356)
                       +++++||+||++.              ..+.....++...+.++++ ++++  .||-..+-...++    ...+. +.|
T Consensus        78 -~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la----~~~~~-~~r  135 (282)
T PRK05808         78 -DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELA----AATKR-PDK  135 (282)
T ss_pred             -HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----HhhCC-Ccc
Confidence             5689999999985              3456667788888888885 5544  6777776543332    22233 457


Q ss_pred             EEEec
Q 018433          186 LLGVT  190 (356)
Q Consensus       186 viG~t  190 (356)
                      ++|+.
T Consensus       136 ~ig~h  140 (282)
T PRK05808        136 VIGMH  140 (282)
T ss_pred             eEEee
Confidence            88873

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.32  E-value=4.6e-07  Score=85.88  Aligned_cols=120  Identities=20%  Similarity=0.200  Sum_probs=74.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEE----EEeCC----CChhhhhC--CCc
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVR----GFLGQ----PQLENALT--GMD  114 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~----~~~~t----~d~~~al~--~aD  114 (356)
                      |.|+||+|++|+.++..|+..++ .+|+++|.++  +.....++........++    ...+.    ..+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            68999999999999999998865 4999999998  444555553211111121    11111    22345677  999


Q ss_pred             EEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec----CCCCcc
Q 018433          115 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNST  167 (356)
Q Consensus       115 iVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t----NPv~~~  167 (356)
                      +|+.+|....-|=  ..-.+.+..|+-..+++++...++.-+-.|.+.|    ||+++|
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm  138 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM  138 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH
Confidence            9999987543222  2346778999999999999999988776666654    676665

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.32  E-value=3.9e-06  Score=80.01  Aligned_cols=118  Identities=14%  Similarity=0.233  Sum_probs=74.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHH--------Hh---cCCC---------CCeEEEEeCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD--------IS---HMDT---------GAVVRGFLGQ  103 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~d--------l~---~~~~---------~~~v~~~~~t  103 (356)
                      .||+|||+ |.+|..++..++..|.  +|+++|+++ ....+.+        +.   +...         ...+.   .+
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~---~~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR---TS   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE---ee
Confidence            58999999 9999999999999988  999999987 2111111        11   1000         01122   23


Q ss_pred             CChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433          104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD  182 (356)
Q Consensus       104 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~  182 (356)
                      +|+ +++++||+||.+.              ..+..+.+++.+.+.++++ ++++  +||.......-++    ... -.
T Consensus        78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~la----~~~-~~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEIA----TAL-ER  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHHH----hhc-CC
Confidence            566 6789999999985              2344556677777888875 5544  5666655432222    222 13


Q ss_pred             CCCEEEec
Q 018433          183 PKKLLGVT  190 (356)
Q Consensus       183 ~~kviG~t  190 (356)
                      +.|++|+.
T Consensus       136 ~~r~ig~h  143 (291)
T PRK06035        136 KDRFIGMH  143 (291)
T ss_pred             cccEEEEe
Confidence            56788873

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.29  E-value=1.8e-06  Score=74.94  Aligned_cols=94  Identities=23%  Similarity=0.324  Sum_probs=62.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--C------CCeEEEEeCCCChhhhhCCCcEEE
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T------GAVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--~------~~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      ||+|+|| |+.|.++|..|..++.  +|.|+++++.....+.-.+..  .      ...+..   ++|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence            8999999 9999999999999997  999999976211222222221  1      123433   479999999999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEec
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~t  161 (356)
                      ++.  |              ....+++++.+..+-+ +..+++++
T Consensus        75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence            974  2              2235678888888774 44555443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.26  E-value=9.9e-06  Score=82.30  Aligned_cols=119  Identities=15%  Similarity=0.181  Sum_probs=77.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC---------------CCCeEEEEeCCCChhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---------------TGAVVRGFLGQPQLEN  108 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~---------------~~~~v~~~~~t~d~~~  108 (356)
                      .|||+|||+ |+||..+|..|+..|...+++.+|+++.+  +..+....               ....++.   |+|+.+
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~   74 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEK   74 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHH
Confidence            489999999 99999999999988654499999998711  11111110               0112332   467778


Q ss_pred             hhCCCcEEEEcCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHH
Q 018433          109 ALTGMDLVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPI  170 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~t~~  170 (356)
                      ++++||++|++.+.|...+- .. + -.-+...+.+.++.|.++.++..+++.  |.|.++.-.+
T Consensus        75 ~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~  137 (473)
T PLN02353         75 HVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI  137 (473)
T ss_pred             HHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence            89999999999998864321 00 0 012334466777777777655444443  6888766444

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.24  E-value=1.4e-05  Score=80.69  Aligned_cols=171  Identities=13%  Similarity=0.023  Sum_probs=97.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      +|||.|+||+|+||++++..|+..+.  +|+.+|.... +....+.+......+..+.. .-+..++.++|+||.+|+..
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlAa~~  195 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLACPA  195 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccCCCEEEECceec
Confidence            58999999999999999999999887  9999997531 11011111111123333221 11234578999999998753


Q ss_pred             C--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccH--HHHHHHHHH-hCCCCCCCEEEechhhHHHH
Q 018433          124 R--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTV--PIAAEVFKK-AGTYDPKKLLGVTMLDVVRA  197 (356)
Q Consensus       124 ~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t--~~~~~~~~~-~~~~~~~kviG~t~ld~~R~  197 (356)
                      .  ....+..+++..|+....++++.+++..  ..+|++|.- +....  ....|-.+. ..-+.+...+|.+.+...++
T Consensus       196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~  273 (436)
T PLN02166        196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETL  273 (436)
T ss_pred             cchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHHHH
Confidence            2  2223456778899999999999999875  356655431 10000  000000000 00122334566665555555


Q ss_pred             HHHHHHHhCCCCCCCc-ccEEecc
Q 018433          198 NTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      -...++..+++..-++ ..++|.+
T Consensus       274 ~~~y~~~~~l~~~ilR~~~vYGp~  297 (436)
T PLN02166        274 AMDYHRGAGVEVRIARIFNTYGPR  297 (436)
T ss_pred             HHHHHHHhCCCeEEEEEccccCCC
Confidence            5555566666554443 3467754

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.21  E-value=1.2e-05  Score=76.32  Aligned_cols=116  Identities=17%  Similarity=0.276  Sum_probs=78.7

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCCCCCC
Q 018433           48 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVPRKP  126 (356)
Q Consensus        48 ~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~~~~  126 (356)
                      .|+||+|++|++++..|+..+...+|..+|+........++.+......+.. +....++.+|++++|+||.+|....-.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            3899999999999999999986669999998762211112222211001111 112357788999999999998753333


Q ss_pred             C-CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          127 G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       127 g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      + .....+...|+...+.+.+...+..-+  -+|+|.-.+
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~~  118 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSIS  118 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCcc
Confidence            3 456778899999999999999986533  344544443

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.17  E-value=5e-05  Score=74.03  Aligned_cols=167  Identities=13%  Similarity=0.026  Sum_probs=100.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHh-cC--CCCCeEEEEeC----CCChhhhhCCCc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS-HM--DTGAVVRGFLG----QPQLENALTGMD  114 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~-~~--~~~~~v~~~~~----t~d~~~al~~aD  114 (356)
                      ++||.|+||+|++|++++..|+..+.  +|+.+|+..  ......++. ..  .....+..+.+    ..++.+.++++|
T Consensus        15 ~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d   92 (348)
T PRK15181         15 PKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVD   92 (348)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCC
Confidence            47999999999999999999998887  999999754  111111111 00  00112322221    113345678999


Q ss_pred             EEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC------CCccHHHHHHHHHHhCCCCCCCE
Q 018433          115 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPKKL  186 (356)
Q Consensus       115 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP------v~~~t~~~~~~~~~~~~~~~~kv  186 (356)
                      +||.+|+.+..+  .....+....|+....++.+.+++.... .++.+|..      .+..  .     .+.....|...
T Consensus        93 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~--~-----~e~~~~~p~~~  164 (348)
T PRK15181         93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLP--K-----IEERIGRPLSP  164 (348)
T ss_pred             EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCC--C-----CCCCCCCCCCh
Confidence            999998764322  1334556789999999999999887543 34444321      1110  0     01111224456


Q ss_pred             EEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          187 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       187 iG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      +|.+.+...++....++..|++...++ ..++|.+
T Consensus       165 Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~  199 (348)
T PRK15181        165 YAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR  199 (348)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence            777765555555556667787776664 5677764

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.17  E-value=8.2e-06  Score=77.78  Aligned_cols=120  Identities=22%  Similarity=0.318  Sum_probs=72.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHH----HHh----cCCCC--------CeEEEEeCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA----DIS----HMDTG--------AVVRGFLGQPQ  105 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~----dl~----~~~~~--------~~v~~~~~t~d  105 (356)
                      .+||+|||+ |.+|..+|..|+..+.  +|+++|+++  +.....    .+.    .....        ..++.   ++|
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   77 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD   77 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence            468999999 9999999999999988  999999986  111111    111    11100        12332   356


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      + +++++||+||++.-              .+..+.+.+...+.+++ |++++  +||...+....+    .... -.+.
T Consensus        78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~s~l----a~~~-~~~~  135 (292)
T PRK07530         78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSISITRL----ASAT-DRPE  135 (292)
T ss_pred             H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHH----Hhhc-CCcc
Confidence            6 56899999999852              22233445556677776 46644  456655443222    2222 2245


Q ss_pred             CEEEech
Q 018433          185 KLLGVTM  191 (356)
Q Consensus       185 kviG~t~  191 (356)
                      |++|+..
T Consensus       136 r~~g~h~  142 (292)
T PRK07530        136 RFIGIHF  142 (292)
T ss_pred             cEEEeec
Confidence            7777643

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.15  E-value=8.5e-06  Score=83.51  Aligned_cols=121  Identities=21%  Similarity=0.294  Sum_probs=79.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--H---H-HHhcCCC---------CCeEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T---A-DISHMDT---------GAVVRGFLGQP  104 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~--~---~-dl~~~~~---------~~~v~~~~~t~  104 (356)
                      +..||+|||+ |.+|+.+|..++..|+  +|+++|+++  + .+.  .   + .+.....         ..+++.   ++
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~   77 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT   77 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence            4468999999 9999999999999998  999999987  1 111  0   0 1111110         112333   46


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      |+ +++++||+||.+.              .++..+.+.+...+.+++|... |+.||...+-..-+++.    .. .+.
T Consensus        78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~-IlasnTStl~i~~iA~~----~~-~p~  136 (503)
T TIGR02279        78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT-IIASNTSSLSITAIAAG----LA-RPE  136 (503)
T ss_pred             CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEECCCCCCHHHHHHh----cC-ccc
Confidence            76 5689999999984              4566677777788988886443 35788877654322222    21 245


Q ss_pred             CEEEec
Q 018433          185 KLLGVT  190 (356)
Q Consensus       185 kviG~t  190 (356)
                      |++|+.
T Consensus       137 r~~G~H  142 (503)
T TIGR02279       137 RVAGLH  142 (503)
T ss_pred             ceEEEe
Confidence            677764

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PLN02427 UDP-apiose/xylose synthase

Probab=98.15  E-value=2.7e-05  Score=76.88  Aligned_cols=114  Identities=18%  Similarity=0.101  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCC---CCCeEEEEeC----CCChhhhhCCCc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMD---TGAVVRGFLG----QPQLENALTGMD  114 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~---~~~~v~~~~~----t~d~~~al~~aD  114 (356)
                      ++|||.|+||+|++|++++..|+.. +.  +|+.+|.+....  ..+....   ....++.+.+    ..++.++++++|
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~--~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKI--KHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhh--hhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            4689999999999999999999987 45  899999754111  1111110   0112332211    134566788999


Q ss_pred             EEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          115 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       115 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      +||.+|+.....  .....+.+..|+....++.+..++..  ..+|.+|.
T Consensus        89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS  136 (386)
T PLN02427         89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST  136 (386)
T ss_pred             EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence            999999854211  12223456678888888888887654  35666653

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.14  E-value=1.5e-05  Score=76.60  Aligned_cols=119  Identities=24%  Similarity=0.355  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHh---cC----C----CCCeEEEEeCCCChhhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS---HM----D----TGAVVRGFLGQPQLENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~---~~----~----~~~~v~~~~~t~d~~~al~  111 (356)
                      +||+|||+ |.+|..++..|+..++  +|+++|.++  .......+.   ..    .    ....++.   ++|+.++++
T Consensus         5 ~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~   78 (311)
T PRK06130          5 QNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAVS   78 (311)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHhc
Confidence            58999999 9999999999998887  999999976  111111110   00    0    0011232   357777899


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      +||+||++.-              .......++...+..+++ +++|  +||....-..-   + ..... .+.+++|+.
T Consensus        79 ~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~~~~---l-~~~~~-~~~~~ig~h  137 (311)
T PRK06130         79 GADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLPITA---I-AQAVT-RPERFVGTH  137 (311)
T ss_pred             cCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCCHHH---H-HhhcC-CcccEEEEc
Confidence            9999999841              223334455556666664 5433  46665544322   2 22211 245777763

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.14  E-value=1.4e-05  Score=82.16  Aligned_cols=118  Identities=21%  Similarity=0.287  Sum_probs=76.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hh--HHHH----Hh-cCCC--------CCeEEEEeCCCCh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD----IS-HMDT--------GAVVRGFLGQPQL  106 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g--~~~d----l~-~~~~--------~~~v~~~~~t~d~  106 (356)
                      .||+|||+ |.+|+.+|..++..|+  +|+++|+++  + .+  ...+    +. +...        ..+++.   ++++
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~~   81 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEAL   81 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence            58999999 9999999999999998  999999987  1 11  1111    11 1100        112443   3566


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433          107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k  185 (356)
                       +++++||+||.+.              .++..+-+.+...+.+.+ |++++  +||...+-..-++    .... .++|
T Consensus        82 -~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~~la----~~~~-~p~r  139 (507)
T PRK08268         82 -ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSITAIA----AALK-HPER  139 (507)
T ss_pred             -HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----hhcC-Cccc
Confidence             5689999999984              456666777777888888 56643  5666654432222    2222 2567


Q ss_pred             EEEec
Q 018433          186 LLGVT  190 (356)
Q Consensus       186 viG~t  190 (356)
                      ++|+.
T Consensus       140 ~~G~h  144 (507)
T PRK08268        140 VAGLH  144 (507)
T ss_pred             EEEEe
Confidence            77764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.06  E-value=2.6e-05  Score=74.25  Aligned_cols=99  Identities=20%  Similarity=0.268  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHH---HHH-----hcCCC--------CCeEEEEeCCCCh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT---ADI-----SHMDT--------GAVVRGFLGQPQL  106 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~---~dl-----~~~~~--------~~~v~~~~~t~d~  106 (356)
                      .||+|||+ |.+|..+|..|+..++  +|+++|+++  .....   .++     .....        ...++.   ++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence            48999999 9999999999999888  999999987  11111   011     00000        012332   3577


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q 018433          107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVN  165 (356)
Q Consensus       107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~  165 (356)
                      ++++++||+||.+..              .+..+.+.+...+.++++ ++++  ++|...
T Consensus        76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt  119 (288)
T PRK09260         76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTST  119 (288)
T ss_pred             HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence            789999999999852              223344455556777774 5543  445444

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.05  E-value=0.00013  Score=70.94  Aligned_cols=176  Identities=14%  Similarity=0.063  Sum_probs=96.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEE-EeCCCChhhhhCC--CcEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENALTG--MDLV  116 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~--aDiV  116 (356)
                      -+.++|.|+||+|++|++++..|+..|.  +|+.+|++..  ......+........+.. .....++.+.+++  .|+|
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   79 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIV   79 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence            3457999999999999999999998887  8999997662  111111211100001111 0011233445554  5999


Q ss_pred             EEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccHHHHHHHHHHhCCCCCCCEEEechhh
Q 018433          117 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLD  193 (356)
Q Consensus       117 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t~~~~~~~~~~~~~~~~kviG~t~ld  193 (356)
                      |.+++.+...  ..+....+..|+.....+.+.+.+.+....++++|.. +...... ..-..+....++...+|.+...
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~-~~~~~e~~~~~p~~~Y~~sK~~  158 (349)
T TIGR02622        80 FHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEW-VWGYRETDPLGGHDPYSSSKAC  158 (349)
T ss_pred             EECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCC-CCCCccCCCCCCCCcchhHHHH
Confidence            9999854221  1233456788999999999998766533456666542 1100000 0000011123345567776655


Q ss_pred             HHHHHHHHHHHh-------CCCCCCCc-ccEEecc
Q 018433          194 VVRANTFVAEVL-------GLDPRDVD-VPVVGGH  220 (356)
Q Consensus       194 ~~R~~~~la~~l-------~v~~~~v~-~~viG~h  220 (356)
                      ..++-..+++.+       |++...++ +.++|..
T Consensus       159 ~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~  193 (349)
T TIGR02622       159 AELVIASYRSSFFGVANFHGIKIASARAGNVIGGG  193 (349)
T ss_pred             HHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence            555555556554       44433332 4566643

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.05  E-value=0.00012  Score=70.90  Aligned_cols=175  Identities=16%  Similarity=0.057  Sum_probs=97.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi  118 (356)
                      +++|.|+||+|++|++++..|+..|.  +|+.++++. ......++........+..+.+    ..++.++++++|+||.
T Consensus         9 ~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          9 KKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            56899999999999999999999887  887776654 2221111111110112222211    1234567889999999


Q ss_pred             cCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-Ccc------HHHHHHHHH-----HhCCCCCCC
Q 018433          119 PAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NST------VPIAAEVFK-----KAGTYDPKK  185 (356)
Q Consensus       119 ~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv-~~~------t~~~~~~~~-----~~~~~~~~k  185 (356)
                      +|+.......+ ..+++..|+.....+.+.+.+...-..++++|.-. ...      .....|-.+     ...-.++..
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~  166 (338)
T PLN00198         87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTW  166 (338)
T ss_pred             eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCccc
Confidence            98743211122 23456889999999999998764323555554311 100      000000000     000123344


Q ss_pred             EEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          186 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       186 viG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      .+|.+.+...++...+++..|++...++ ..|+|.+
T Consensus       167 ~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            5666655555555566677777655553 4577764

>PLN02650 dihydroflavonol-4-reductase

Probab=98.04  E-value=0.0001  Score=71.73  Aligned_cols=178  Identities=15%  Similarity=0.049  Sum_probs=99.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcC-CCCCeEEEEe----CCCChhhhhCCCc
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFL----GQPQLENALTGMD  114 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~-~~~~~v~~~~----~t~d~~~al~~aD  114 (356)
                      +...++|.|+||+|++|++++..|+..|.  +|++++++. ......++... .....+..+.    ....+.++++++|
T Consensus         2 ~~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d   79 (351)
T PLN02650          2 GSQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCT   79 (351)
T ss_pred             CCCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCC
Confidence            34556999999999999999999999887  888887764 11111122111 1011222211    1134567788999


Q ss_pred             EEEEcCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc-----HHHHHHHHH---Hh--CCCCC
Q 018433          115 LVIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----VPIAAEVFK---KA--GTYDP  183 (356)
Q Consensus       115 iVIi~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~-----t~~~~~~~~---~~--~~~~~  183 (356)
                      +||.+|+.......+ ....+..|+.....+.+.+.+...-.+||++|.....-     .+...|-.+   ..  ...++
T Consensus        80 ~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  159 (351)
T PLN02650         80 GVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMT  159 (351)
T ss_pred             EEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccc
Confidence            999998753211112 23567889999999999998765334566654331100     000000000   00  00001


Q ss_pred             CCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       184 ~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      ...+|.+.+....+-..+++..|++..-++ +.++|..
T Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~  197 (351)
T PLN02650        160 GWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPF  197 (351)
T ss_pred             cchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCC
Confidence            124555555555555556677777665553 5577864

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.04  E-value=3.1e-05  Score=74.51  Aligned_cols=103  Identities=24%  Similarity=0.266  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHH--------HHhcCCC---------CCeEEEEeCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA--------DISHMDT---------GAVVRGFLGQPQ  105 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~--------dl~~~~~---------~~~v~~~~~t~d  105 (356)
                      .+||+|||+ |.+|++++..|+..|+  +|+++|+++ ....+.        .+.....         ...++.   ++|
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence            468999998 9999999999999988  999999986 111110        1211110         012332   367


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 018433          106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  167 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~  167 (356)
                      +.+++++||+|+.+..              .+....+.+...+.+.+++..++ .||.....
T Consensus        76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~  122 (308)
T PRK06129         76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSALL  122 (308)
T ss_pred             HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCCC
Confidence            8788999999999852              22333444555666677655444 45555443

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.02  E-value=6.6e-05  Score=71.64  Aligned_cols=103  Identities=21%  Similarity=0.303  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH--------HHHhcCCC-C-----CeEEEEeCCCChhhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT--------ADISHMDT-G-----AVVRGFLGQPQLENA  109 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~--------~dl~~~~~-~-----~~v~~~~~t~d~~~a  109 (356)
                      .||+|||+ |.+|+.+|..|+..|.  +|+++|.+. ....+        .++.+... .     ........++++ ++
T Consensus         5 ~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~   80 (295)
T PLN02545          5 KKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EE   80 (295)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HH
Confidence            58999999 9999999999998887  999999976 11111        11211110 0     001111123455 67


Q ss_pred             hCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                      +++||+||.+.              .++..+...+...+.+++ |+++|  +||-..+-
T Consensus        81 ~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~  123 (295)
T PLN02545         81 LRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS  123 (295)
T ss_pred             hCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence            89999999984              344555666666677776 46543  46666543

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.01  E-value=4.7e-05  Score=78.03  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHH-------HHh---cCCC--CCeEEEEeCCCChhhhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA-------DIS---HMDT--GAVVRGFLGQPQLENAL  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~-------dl~---~~~~--~~~v~~~~~t~d~~~al  110 (356)
                      +||+|||+ |.+|+.+|..|+..|+  +|+++|+++  ......       .+.   ....  ...++.   ++|+.+++
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~   78 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV   78 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence            68999999 9999999999999998  999999986  111110       011   0000  011332   35777899


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  168 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t  168 (356)
                      ++||+||.+.              ..+..+.+.+...+.+++|... |+.||..++..
T Consensus        79 ~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~  121 (495)
T PRK07531         79 AGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP  121 (495)
T ss_pred             cCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence            9999999974              2334445556666777775443 45777777554

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.01  E-value=7.2e-05  Score=75.60  Aligned_cols=111  Identities=14%  Similarity=0.039  Sum_probs=74.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .|||.|+||+|+||++++..|+..+.  +|+.+|...  ........  .. ...++.+.. .-...++.++|+||.+|+
T Consensus       119 ~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~--~~-~~~~~~i~~-D~~~~~l~~~D~ViHlAa  192 (442)
T PLN02206        119 GLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHH--FS-NPNFELIRH-DVVEPILLEVDQIYHLAC  192 (442)
T ss_pred             CCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhh--cc-CCceEEEEC-CccChhhcCCCEEEEeee
Confidence            48999999999999999999999887  899998643  11111111  11 122333221 112346789999999987


Q ss_pred             CCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          122 VPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       122 ~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ...  ....+-.+.+..|+....++.+.+++..  ..+|++|.
T Consensus       193 ~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS  233 (442)
T PLN02206        193 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTST  233 (442)
T ss_pred             ecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECC
Confidence            532  1122345677899999999999998765  35665543

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=97.98  E-value=0.00017  Score=69.00  Aligned_cols=115  Identities=17%  Similarity=0.133  Sum_probs=73.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCC-CCCeEEEEe----CCCChhhhhCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD-TGAVVRGFL----GQPQLENALTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~-~~~~v~~~~----~t~d~~~al~~aDiVI  117 (356)
                      .+||.|+||+|++|++++..|+..|.  +|+.++++.. ......+.... ....+..+.    ...++.++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            46999999999999999999999888  8888887652 11111221110 011222221    1234667789999999


Q ss_pred             EcCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Q 018433          118 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~t  161 (356)
                      .+|+........ ..+.+..|+.....+.+.+.+. ... .+|++|
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~S  126 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTS  126 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcc
Confidence            998753221112 2356788999999999998875 333 455443

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=97.98  E-value=7.2e-05  Score=79.31  Aligned_cols=179  Identities=15%  Similarity=0.083  Sum_probs=106.4

Q ss_pred             hhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-CC--
Q 018433           30 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ--  105 (356)
Q Consensus        30 ~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d--  105 (356)
                      +-|+-.|.++   +.|||.|+||+|++|++++..|+.. ++  +|+.+|++... . .++..   ...+..+.+. +|  
T Consensus       304 ~~~~~~~~~~---~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~-~-~~~~~---~~~~~~~~gDl~d~~  373 (660)
T PRK08125        304 LNSKPACSAK---RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDA-I-SRFLG---HPRFHFVEGDISIHS  373 (660)
T ss_pred             ecccchhhhh---cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchh-h-hhhcC---CCceEEEeccccCcH
Confidence            5566677655   7789999999999999999999874 56  99999986521 1 11111   1122222111 11  


Q ss_pred             --hhhhhCCCcEEEEcCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccH--HHHHHHHHH-
Q 018433          106 --LENALTGMDLVIIPAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTV--PIAAEVFKK-  177 (356)
Q Consensus       106 --~~~al~~aDiVIi~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t--~~~~~~~~~-  177 (356)
                        ++++++++|+||.+|+...  .......+.+..|+....++.+.++++.  ..+|.+|.. +....  ....|-... 
T Consensus       374 ~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~  451 (660)
T PRK08125        374 EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPSTSEVYGMCTDKYFDEDTSNL  451 (660)
T ss_pred             HHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEcchhhcCCCCCCCcCcccccc
Confidence              3456889999999987542  2223345677889999999999999875  355555431 11100  000010000 


Q ss_pred             --hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          178 --AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       178 --~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                        .+.-++...+|.+.+...++-...++..|++...++ ..++|.+
T Consensus       452 ~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        452 IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             ccCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence              000012236777766566666666777787766665 4467754

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.97  E-value=0.00012  Score=70.45  Aligned_cols=117  Identities=21%  Similarity=0.383  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc--CC--C------CCeEEEEeCCCChhhhhCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MD--T------GAVVRGFLGQPQLENALTGM  113 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~--~~--~------~~~v~~~~~t~d~~~al~~a  113 (356)
                      ++||+|+|| |.-|.++|..|+.+++  +++|..+++  ..+.++..  ..  +      .+.+.   .++|+.+++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~---at~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLK---ATTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCH--HHHHHHHhcCcCccccCCccCCcccc---cccCHHHHHhcC
Confidence            479999999 9999999999999997  999999876  22223332  21  1      12233   368999999999


Q ss_pred             cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec---CCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS---NPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t---NPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      |+||+..  |              ...++++++.+..+- ++..++.+|   +|...  ..+++++++.  +|.++ ++.
T Consensus        73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~--~l~seii~e~--l~~~~-~~v  131 (329)
T COG0240          73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETG--RLLSEIIEEE--LPDNP-IAV  131 (329)
T ss_pred             CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCc--chHHHHHHHH--cCCCe-EEE
Confidence            9999974  3              334566666665443 577777776   44322  2235666665  33344 444

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=97.93  E-value=0.00019  Score=67.94  Aligned_cols=166  Identities=14%  Similarity=0.056  Sum_probs=95.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe----CCCChhhhhCC--CcEE
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL----GQPQLENALTG--MDLV  116 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~--aDiV  116 (356)
                      ||.|+||+|++|++++..|+..+...+|+++|....   .....++...   ..+..+.    ...++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            589999999999999999987763348899986431   1111122211   1222211    11244566776  8999


Q ss_pred             EEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-----CccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          117 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-----NSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       117 Ii~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv-----~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      |.+++....  .......++..|+.....+++.+.+...+..++.+|...     ......     .......+...+|.
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~  152 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA  152 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence            999875321  112234567889999999999998776565666654311     000000     01112334445666


Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCc-ccEEec
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGG  219 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~-~~viG~  219 (356)
                      +.....++-..+++..+++..-++ ..++|.
T Consensus       153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~  183 (317)
T TIGR01181       153 SKAASDHLVRAYHRTYGLPALITRCSNNYGP  183 (317)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccccCC
Confidence            555555555556667776654443 345664

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.91  E-value=0.00013  Score=65.77  Aligned_cols=97  Identities=21%  Similarity=0.343  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      +|+++|+|+ |++|++++..+...++  |+..-..+.....+..-...  .+.++.    ...++|.+.||+||++.  |
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~----~~~~dA~~~aDVVvLAV--P   69 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITG----GSNEDAAALADVVVLAV--P   69 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--cccccc----CChHHHHhcCCEEEEec--c
Confidence            578999999 9999999999999998  88888666522222211111  233443    23468999999999985  3


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                                +..    +.++.+.++..-.+-+||-.|||.+
T Consensus        70 ----------~~a----~~~v~~~l~~~~~~KIvID~tnp~~   97 (211)
T COG2085          70 ----------FEA----IPDVLAELRDALGGKIVIDATNPIE   97 (211)
T ss_pred             ----------HHH----HHhHHHHHHHHhCCeEEEecCCCcc
Confidence                      223    3344455554334667888899964

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.90  E-value=0.00019  Score=71.81  Aligned_cols=119  Identities=24%  Similarity=0.327  Sum_probs=73.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----------------CCCeEEEEeCCCChhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN  108 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~t~d~~~  108 (356)
                      |||+|||. |.+|..+|..|+..|+  +|+.+|++...  +.++....                ....++.   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            68999999 9999999999999888  89999997621  11222210                0012332   357778


Q ss_pred             hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHH
Q 018433          109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~~~~~~~~  177 (356)
                      ++++||+||++...|.....      .-+...+.+..+.+.++. ++.+|++. |-|.+....+...++.+
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            89999999999877653221      112333444555555544 45555544 45666554444344333

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.87  E-value=6.1e-05  Score=59.28  Aligned_cols=94  Identities=21%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC-CCcEEEEE-eCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      ||+|||+ |++|++++..|...+ ...+|.++ ++++  ....++.+.. .  +..+  +.+..+++++||+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence            7999999 999999999999887 33488866 8765  1222232211 1  1221  2256789999999999852  


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                        |.            .+.++++.+....++..+|-++||
T Consensus        71 --p~------------~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --PQ------------QLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --GG------------GHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --HH------------HHHHHHHHHhhccCCCEEEEeCCC
Confidence              11            145666666444578888877776

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=97.85  E-value=0.0003  Score=67.71  Aligned_cols=118  Identities=15%  Similarity=0.104  Sum_probs=79.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh--HHHHHhcCCCCCeEEEEe----CCCChhhhhCCCc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTGAVVRGFL----GQPQLENALTGMD  114 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g--~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aD  114 (356)
                      ..++|+|+||+|++|+.+...|+++|+  +|+--=+++  .+.  +..+|....  .+++.+.    ..+.+.+|+.+||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            457999999999999999999999998  444333333  222  344555332  1222221    1345778999999


Q ss_pred             EEEEcCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          115 LVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       115 iVIi~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      .|+.+|....-... .-.+++.-.++...++.+.+.++. ..+=+|+|+-..
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~a  131 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTA  131 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHH
Confidence            99999875322222 244678899999999999999887 444455655543

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.81  E-value=8.8e-05  Score=71.32  Aligned_cols=108  Identities=12%  Similarity=0.080  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      |||.|+||+|++|++++..|+..|+  +|+.++++....  ..+.+... ..+.. .....++.++++++|+||.+++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~v-~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~   75 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWGA-ELVYGDLSLPETLPPSFKGVTAIIDASTSR   75 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcCC-EEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence            6999999999999999999998887  899998764211  11111110 01111 011234677899999999986532


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ..   ...++...|......+++.+++.+-+ .+|.+|
T Consensus        76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S  109 (317)
T CHL00194         76 PS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS  109 (317)
T ss_pred             CC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence            11   12234566788888899988877644 455554

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=97.80  E-value=0.00018  Score=69.88  Aligned_cols=110  Identities=16%  Similarity=0.132  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-----CChhhhhCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~al~~aDiVI  117 (356)
                      +|||.|+||+|++|++++..|+.. +.  +|+.+|+...  ...++...   ..+..+.+.     .++.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            369999999999999999999875 55  8999997431  11112111   122322111     12335678999999


Q ss_pred             EcCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          118 IPAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       118 i~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      .+++...  ....+-......|+....++++.+++..  ..+|.+|.
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS  118 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  118 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence            9887532  2223334456778888889999888754  46665543

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.79  E-value=0.00023  Score=70.74  Aligned_cols=114  Identities=18%  Similarity=0.244  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC------------CCeEEEEeCCCChhhhhCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLENALTG  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~------------~~~v~~~~~t~d~~~al~~  112 (356)
                      |||+|||+ |.||..+|..++. |+  +|+.+|+++.+  +..+.....            ....+.. .++|..++.++
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~-~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFN-ATLDKNEAYRD   73 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEE-EecchhhhhcC
Confidence            69999999 9999999977774 66  99999998611  111222100            0111221 24566678899


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHH
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPI  170 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~t~~  170 (356)
                      ||+||++...|.......     -+...+.+.++.|.+..|+.+|++- |-|.+..-.+
T Consensus        74 ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l  127 (388)
T PRK15057         74 ADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM  127 (388)
T ss_pred             CCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence            999999976653211111     1223344444555443455555444 5777665444

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.79  E-value=0.00037  Score=66.27  Aligned_cols=102  Identities=21%  Similarity=0.206  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC---CCeEEE-EeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---GAVVRG-FLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~---~~~v~~-~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|+|+ |.+|..++..|...+.  +|.++|++.....  .+.....   ...... ...+++..+ .+++|+||++.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLD--ALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV   74 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence            69999999 9999999999998887  9999998541111  1111100   011111 012345544 49999999985


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTV  168 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t  168 (356)
                      -..                -+.++++.+..+ .++..|+...|.++...
T Consensus        75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~  107 (304)
T PRK06522         75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE  107 (304)
T ss_pred             ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence            321                133444455543 36778888899887653

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=97.79  E-value=0.00021  Score=69.10  Aligned_cols=113  Identities=17%  Similarity=0.227  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHHHHhcCCCCCeEEEEe----CCCChhhhhCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiVI  117 (356)
                      .++|.|+||+|++|++++..|+..+...+|+++|.+....  ...++..    ..+..+.    ...++.+++++.|+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            4689999999999999999998875334899999765211  1112211    1222211    1124556778999999


Q ss_pred             EcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          118 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .+||....+  ..+..+.+..|+.....+.+.+.+.... .||++|
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            999864322  2234567889999999999999876433 555554

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.78  E-value=0.00019  Score=70.62  Aligned_cols=107  Identities=16%  Similarity=0.289  Sum_probs=71.0

Q ss_pred             hhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCc---hhHHHHHhcC--C--C---
Q 018433           29 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHM--D--T---   93 (356)
Q Consensus        29 ~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~~---~g~~~dl~~~--~--~---   93 (356)
                      +||.+-.|++.      ||+|||+ |.-|+++|..|..++.     ..++.|+.+++.   +..+.++++.  .  +   
T Consensus         2 ~~~~~~~~~~~------ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~   74 (365)
T PTZ00345          2 SLFQKLRCGPL------KVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPG   74 (365)
T ss_pred             cchhhcccCCC------eEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCC
Confidence            57777777765      9999999 9999999999998762     238888887762   2234444432  1  1   


Q ss_pred             ---CCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH--hC-CCcEEEEec
Q 018433           94 ---GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK--CC-PNATVNLIS  161 (356)
Q Consensus        94 ---~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~--~~-p~a~viv~t  161 (356)
                         +..+..   ++|+.+++++||+||++.  |              ...++++++.++.  +- ++..+|.++
T Consensus        75 ~~Lp~ni~~---tsdl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         75 IKLPDNIVA---VSDLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             CcCCCceEE---ecCHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence               123433   468888999999999874  2              2335666677765  33 344555554

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.75  E-value=0.00017  Score=68.70  Aligned_cols=120  Identities=12%  Similarity=0.146  Sum_probs=72.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC-----CCCeEEE-EeCCCChhhhhCCCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGAVVRG-FLGQPQLENALTGMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~-----~~~~v~~-~~~t~d~~~al~~aDiVIi  118 (356)
                      |||+|+|+ |.+|..++..|...+.  +|.++++.+..   ..+.+..     ....... ....+|..++.+++|+||+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRA---KALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHH---HHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            69999999 9999999999998887  89999982211   1122111     0011110 0012455555689999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE-echhh
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTMLD  193 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG-~t~ld  193 (356)
                      +.-.+                .+.++++.+..+- ++..|+.+.|.++....     +.+.  +|++++++ ++...
T Consensus        75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~-----l~~~--~~~~~v~~g~~~~~  128 (305)
T PRK12921         75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ-----LEPY--FGRERVLGGVVFIS  128 (305)
T ss_pred             Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH-----HHHh--CCcccEEEEEEEEE
Confidence            85321                1344555555543 56778788898875432     2332  56677764 34433

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.74  E-value=0.00024  Score=68.27  Aligned_cols=101  Identities=22%  Similarity=0.344  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC------CCCeEEEEeCCCChhhhhCCCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD------TGAVVRGFLGQPQLENALTGMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~------~~~~v~~~~~t~d~~~al~~aDi  115 (356)
                      +|||+|||+ |.+|+.++..|+..+.  ++.++|+++  ......+..+..      ....+..   +++..++++++|+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence            379999999 9999999999998887  899999975  221111100100      0011222   3466678899999


Q ss_pred             EEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433          116 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  166 (356)
Q Consensus       116 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~  166 (356)
                      ||++...                ..+.++.+.+..+. |+.+++..+|-++.
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            9998521                12345555565554 67778878766553

>PLN02214 cinnamoyl-CoA reductase

Probab=97.73  E-value=0.00058  Score=66.47  Aligned_cols=110  Identities=14%  Similarity=0.054  Sum_probs=73.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhH-HHHHhcCCCCCeEEEEe----CCCChhhhhCCCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV-TADISHMDTGAVVRGFL----GQPQLENALTGMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~-~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiV  116 (356)
                      .++|.|+||+|++|++++..|+..|.  +|+.++++..  ... ...+...  ...+..+.    ...++.++++++|+|
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            45899999999999999999999887  8888887541  111 1122211  11222211    123456788999999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |.+|+...   ....+.+..|+.....+.+.+.+.... .|+++|
T Consensus        86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~S  126 (342)
T PLN02214         86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITS  126 (342)
T ss_pred             EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEec
Confidence            99997542   234566788999999999999876543 444443

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=97.71  E-value=0.00071  Score=65.66  Aligned_cols=176  Identities=15%  Similarity=0.113  Sum_probs=98.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCChhhhhC--CCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALT--GMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~--~aDiVIi  118 (356)
                      |||.|+||+|++|++++..|+..+. ..++.+|.....+....+.+......+..+.    ...++.++++  ++|+||.
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            6899999999999999999998775 2466677543111111111111011121111    1123445565  4799999


Q ss_pred             cCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhC-------CC-cEEEEecCC-CCccHHHH--------HHHHHHhC
Q 018433          119 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNP-VNSTVPIA--------AEVFKKAG  179 (356)
Q Consensus       119 ~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNP-v~~~t~~~--------~~~~~~~~  179 (356)
                      +|+....  ......+.+..|+.....+++.+.++.       .. ..++.+|-. +......-        ...+.+..
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~  159 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETT  159 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccC
Confidence            9986421  112235678899999999999998752       12 245544432 11000000        00001111


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      .+.+...+|.+.....++-..+++.+|++...++ ..++|.+.
T Consensus       160 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~  202 (352)
T PRK10084        160 AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH  202 (352)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence            2345567788766666666667788887765554 45778653

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.71  E-value=0.0011  Score=63.60  Aligned_cols=175  Identities=16%  Similarity=0.071  Sum_probs=96.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcC-CCCCeEEEEe----CCCChhhhhCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~-~~~~~v~~~~----~t~d~~~al~~aDiVI  117 (356)
                      .++|.|+||+|++|++++..|+..|.  +|++++++... .....+... .....+..+.    ...++.++++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            46899999999999999999999887  88877765511 111111111 1011222211    1234556788999999


Q ss_pred             EcCCCCCCC-CC-cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHH---H-HHHHHHhCCCC------CCC
Q 018433          118 IPAGVPRKP-GM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI---A-AEVFKKAGTYD------PKK  185 (356)
Q Consensus       118 i~ag~~~~~-g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~---~-~~~~~~~~~~~------~~k  185 (356)
                      .+||..... .. .-...+..|+.....+.+.+.+......|+++|.-.......   . ...+.+.....      +..
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~  162 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ  162 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence            999853211 11 224556789999999999888754223555554321100000   0 00000100011      124


Q ss_pred             EEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          186 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       186 viG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      .+|.+.+...++-..+++..|++..-++ +.++|..
T Consensus       163 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~  198 (325)
T PLN02989        163 WYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI  198 (325)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence            5666655555555556666677655453 5567754

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=97.71  E-value=0.00082  Score=65.30  Aligned_cols=176  Identities=15%  Similarity=0.084  Sum_probs=97.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCChhhhhCC--CcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALTG--MDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~--aDiVIi  118 (356)
                      +||.|+||+|++|++++..|+..+. ..++++|.....+....+.+......+....    ...++.+++++  .|+||.
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            5899999999999999999998875 2566778643211111122110011121111    11234455663  899999


Q ss_pred             cCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhC-------CC-cEEEEecCCC-CccHHHHHHHHHHhCCCCCCCEE
Q 018433          119 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNPV-NSTVPIAAEVFKKAGTYDPKKLL  187 (356)
Q Consensus       119 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~viv~tNPv-~~~t~~~~~~~~~~~~~~~~kvi  187 (356)
                      +||.....  .......+..|+.....+++.+.++.       +. ..++.+|... .....-....+.+.....+...+
T Consensus        81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~s~Y  160 (355)
T PRK10217         81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY  160 (355)
T ss_pred             CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCCChh
Confidence            99864321  11235667889999999999988752       12 2555554321 00000000000011123344556


Q ss_pred             EechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          188 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       188 G~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      |.+.+...++-..+++.++++..-++ ..++|.+.
T Consensus       161 ~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~  195 (355)
T PRK10217        161 SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH  195 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence            77766666666777778787665553 55677553

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.70  E-value=0.00085  Score=67.50  Aligned_cols=120  Identities=15%  Similarity=0.152  Sum_probs=71.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC------------CCeEEEEeCCCChhh
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLEN  108 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~------------~~~v~~~~~t~d~~~  108 (356)
                      +.++|||+|||. |+||..+|..|+. ++  +++.+|+++  ..+..+.....            ...+.   .+++. +
T Consensus         3 ~~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~--~~ve~l~~G~~~~~e~~~~~l~~~g~l~---~t~~~-~   72 (425)
T PRK15182          3 GIDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNK--KRILELKNGVDVNLETTEEELREARYLK---FTSEI-E   72 (425)
T ss_pred             CCCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCH--HHHHHHHCcCCCCCCCCHHHHHhhCCee---EEeCH-H
Confidence            456799999999 9999999999877 45  999999986  22233332211            01122   23454 5


Q ss_pred             hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHH
Q 018433          109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFK  176 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~~~~~~~  176 (356)
                      ++++||++|++.+.|.+....      ..+..+....+.|.++. +...||+- |-|....-.++...+.
T Consensus        73 ~~~~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~  136 (425)
T PRK15182         73 KIKECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA  136 (425)
T ss_pred             HHcCCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence            789999999998877533211      12222333344555544 34444443 5666655433333333

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.67  E-value=0.00047  Score=66.97  Aligned_cols=101  Identities=21%  Similarity=0.216  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC------CCeE----EEEeCCCChhhhhCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------GAVV----RGFLGQPQLENALTGM  113 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~------~~~v----~~~~~t~d~~~al~~a  113 (356)
                      +|||+|||+ |.+|+.+|..|...|+  +|.++|+++.. .  .+.....      ....    ..+..+++. ++++++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~-~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   74 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG-D--ELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA   74 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH-H--HHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence            379999999 9999999999999887  89999985411 1  1111100      0000    001123455 678999


Q ss_pred             cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                      |+||++...+.                ..++++.+.... ++.+|+..+|..+..
T Consensus        75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~  113 (341)
T PRK08229         75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA  113 (341)
T ss_pred             CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence            99999863221                123344555543 567777788887654

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=97.67  E-value=0.00041  Score=66.11  Aligned_cols=112  Identities=18%  Similarity=0.215  Sum_probs=73.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      |||.|+||+|++|++++..|+..+.  +|+.+|++.....  ++.+... ..+.. .....++.++++++|+||..++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRR--NLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCcccc--ccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence            5899999999999999999998887  8999998652111  1111110 11111 111124556788999999988643


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      .....+.......|+.....+++.+.+..-. .++++|.
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS  113 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSS  113 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEec
Confidence            2223345566788999999999988876433 4555543

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.66  E-value=0.00034  Score=67.69  Aligned_cols=98  Identities=18%  Similarity=0.384  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc----CC------CCCeEEEEeCCCChhhhh-CCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH----MD------TGAVVRGFLGQPQLENAL-TGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~----~~------~~~~v~~~~~t~d~~~al-~~a  113 (356)
                      |||+|||| |.+|+.++..|...+.  +|.|+++++.  .+..+..    ..      ....++.   ++|+.+++ .++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence            68999999 9999999999998887  8999998652  1222221    11      1112332   35666776 589


Q ss_pred             cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-h-CCCcEEEEecCCCCc
Q 018433          114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVNS  166 (356)
Q Consensus       114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~-~p~a~viv~tNPv~~  166 (356)
                      |+||++.-                ...+.++++.+.. + .++..++..+|=.+.
T Consensus        73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            99999842                1224455555554 3 367777777777643

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=97.64  E-value=0.00021  Score=70.50  Aligned_cols=170  Identities=15%  Similarity=0.071  Sum_probs=96.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE--EeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~--~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..|||.|+||+|++|++++..|...|+  +|+.+|+... ..   +........+..  .....++..+++++|+||.+|
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~-~~---~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKN-EH---MSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEeccc-cc---cccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            457999999999999999999998887  9999997531 00   000000001110  000122345578999999998


Q ss_pred             CCCCCCC---CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccHH------HHHHHHHHhCCCCCCCEEEec
Q 018433          121 GVPRKPG---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVP------IAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       121 g~~~~~g---~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t~------~~~~~~~~~~~~~~~kviG~t  190 (356)
                      +.....+   ......+..|+.....+++.+++...+ .+|.+|.. +.--..      -..+  .....+.+...+|.+
T Consensus        94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~~~~~~~E--~~~~p~~p~s~Yg~s  170 (370)
T PLN02695         94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLETNVSLKE--SDAWPAEPQDAYGLE  170 (370)
T ss_pred             cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccCcCCCcCc--ccCCCCCCCCHHHHH
Confidence            6432111   122334578999999999999877655 44444432 110000      0000  000023344566666


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      .....++-...++..|++..-++ ..++|.++
T Consensus       171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            55555555555677777655553 45777654

>PRK06194 hypothetical protein; Provisional

Probab=97.63  E-value=0.0017  Score=60.94  Aligned_cols=159  Identities=19%  Similarity=0.153  Sum_probs=90.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|++++..|+..|.  +|+++|.+.  +.....++...  ...+..+.. -+|   ++++++      
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999887  899999875  23333334322  122322211 122   223333      


Q ss_pred             -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHH----HHHhCCC-----cEEEEecCCCCccHHHHHHHH
Q 018433          112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPN-----ATVNLISNPVNSTVPIAAEVF  175 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~-----a~viv~tNPv~~~t~~~~~~~  175 (356)
                       ..|+||..+|.....   ..+   -...+..|+.....+++.    +.+.+.+     +.++++|.-....        
T Consensus        82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------  153 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL--------  153 (287)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc--------
Confidence             469999999864321   111   122345555544444444    5554432     5666655433211        


Q ss_pred             HHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          176 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       176 ~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                          +.+..-.++.+......+...++..++.....+++..+.
T Consensus       154 ----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~  192 (287)
T PRK06194        154 ----APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC  192 (287)
T ss_pred             ----CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence                233334556655444556677777777666666655444

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.63  E-value=0.00036  Score=67.10  Aligned_cols=79  Identities=23%  Similarity=0.296  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..|||+|||+ |.+|.+++..|...++  +|.++|++..                      +++.+++++||+||++.  
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~v--   55 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAV--   55 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEEC--
Confidence            3579999999 9999999999999988  9999998641                      24567889999999984  


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISN  162 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tN  162 (356)
                      |              ...+.++++.+..+  .|+.+++..|+
T Consensus        56 p--------------~~~~~~v~~~l~~~~~~~~~ivi~~s~   83 (308)
T PRK14619         56 S--------------MKGVRPVAEQVQALNLPPETIIVTATK   83 (308)
T ss_pred             C--------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            2              12345555666543  46777777776

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.62  E-value=0.00059  Score=66.47  Aligned_cols=173  Identities=17%  Similarity=0.084  Sum_probs=94.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG----QPQLENALTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiV  116 (356)
                      ..|||.|+||+|++|++++..|+..|.  +|++++.+...  ....++..   ...+..+..    ..++.+++++.|+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            357999999999999999999998887  88888775421  11112211   122332211    12345667889999


Q ss_pred             EEcCCCCCCC---C-CcHH-----HHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccH-------HHHHHH----H
Q 018433          117 IIPAGVPRKP---G-MTRD-----DLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTV-------PIAAEV----F  175 (356)
Q Consensus       117 Ii~ag~~~~~---g-~~r~-----~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t-------~~~~~~----~  175 (356)
                      |.+|+.....   . .+-.     ..+..|+.....+.+.+.+...-.+++++|.- +....       ....|-    .
T Consensus        84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~  163 (353)
T PLN02896         84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI  163 (353)
T ss_pred             EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence            9999864211   1 1111     23344457788888887765322355555431 11000       000000    0


Q ss_pred             HH-hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          176 KK-AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       176 ~~-~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      .. ....++.-.+|.+.+...++-..+++..|++..-++ ..++|.+
T Consensus       164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  210 (353)
T PLN02896        164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF  210 (353)
T ss_pred             HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence            00 000112235677766666666667777776655553 4566654

>PLN02778 3,5-epimerase/4-reductase

Probab=97.62  E-value=0.001  Score=63.61  Aligned_cols=91  Identities=22%  Similarity=0.175  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh--CCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al--~~aDiVIi~  119 (356)
                      ...|||.|+||+|++|++++..|...|.  ++++...+.        .+.            ..+..++  .++|+||.+
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~--------~~~------------~~v~~~l~~~~~D~ViH~   64 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRL--------ENR------------ASLEADIDAVKPTHVFNA   64 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCcc--------CCH------------HHHHHHHHhcCCCEEEEC
Confidence            3458999999999999999999998887  666442211        000            0011122  268999999


Q ss_pred             CCCCCCCC-----CcHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018433          120 AGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN  154 (356)
Q Consensus       120 ag~~~~~g-----~~r~~~~~~N~~i~~~i~~~i~~~~p~  154 (356)
                      |+....+.     ....+.+..|+.....+++.+++....
T Consensus        65 Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~  104 (298)
T PLN02778         65 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV  104 (298)
T ss_pred             CcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            98643222     234567889999999999999987543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.61  E-value=0.00036  Score=60.77  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ++||++||. |.+|+.++..|+..++  +|+.+|++.  ....++.+..    ....   .++.+++++||+||.+-
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-S
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeec
Confidence            479999999 9999999999999998  999999864  2223344322    3332   45788999999999973

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.60  E-value=0.00041  Score=67.77  Aligned_cols=100  Identities=18%  Similarity=0.175  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC----CCC-------CeEEEEeCCCChhhhh
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTG-------AVVRGFLGQPQLENAL  110 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~----~~~-------~~v~~~~~t~d~~~al  110 (356)
                      .++|||+|+|+ |.+|+.++..|...+   +++++..++.  .+.++...    ...       ..+.   .++|+.+++
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~--~~~~i~~~~~~~~~l~~~~~l~~~i~---~t~d~~~a~   75 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAE--TADDINDNHRNSRYLGNDVVLSDTLR---ATTDFAEAA   75 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHH--HHHHHHhcCCCcccCCCCcccCCCeE---EECCHHHHH
Confidence            35689999999 999999999999877   3567776542  22222211    111       1222   246777889


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  166 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~  166 (356)
                      +++|+||++.-                ...+.++++.+..+- ++..+|.++|-.+.
T Consensus        76 ~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         76 NCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             hcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            99999999842                223556666666544 67778888887764

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=97.59  E-value=0.0019  Score=61.92  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=70.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcC-CCCCeEEEEe----CCCChhhhhCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~-~~~~~v~~~~----~t~d~~~al~~aDiVI  117 (356)
                      .++|.|+||+|++|++++..|+..|.  +|+....+. .......+... .....+..+.    ...++.++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            35999999999999999999998887  777555443 21122222211 1111223221    1234567788999999


Q ss_pred             EcCCCCCC-CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          118 IPAGVPRK-PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~-~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .+|+.... ......+++..|+.....+.+.+.+...-..||.+|
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~S  127 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTS  127 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            99875321 111223456789999999998887652112455443

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=97.59  E-value=0.00076  Score=64.93  Aligned_cols=113  Identities=18%  Similarity=0.151  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC--CCcEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--GMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~--~aDiV  116 (356)
                      |||.|+||+|++|++++..|+..+.  +|+++|...  .......+.+.. ...+..+. .-+|   +.++++  ++|+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   77 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV   77 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence            6899999999999999999998887  889998643  111111122111 01111111 1122   233454  68999


Q ss_pred             EEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          117 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       117 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |.+++.....  .....+.+..|+.....+++.+++..-. .++.+|
T Consensus        78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  123 (338)
T PRK10675         78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS  123 (338)
T ss_pred             EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            9998764321  1234567789999999999998876433 455444

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.58  E-value=0.00058  Score=64.60  Aligned_cols=167  Identities=17%  Similarity=0.124  Sum_probs=97.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCC-cEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGM-DLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~a-DiVIi~ag~  122 (356)
                      |+|.|+||+|++|++++..|+..|+  +|+.+|.........+ .+... ...+..   .....+++++. |.||.+++.
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~   74 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQ   74 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEcccc
Confidence            3599999999999999999999988  9999998651111111 11110 011111   12234556677 999999887


Q ss_pred             CCCCCCcH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH-H----HHHHHHHHhCCCCCCCEEEechhhH
Q 018433          123 PRKPGMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV-P----IAAEVFKKAGTYDPKKLLGVTMLDV  194 (356)
Q Consensus       123 ~~~~g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t-~----~~~~~~~~~~~~~~~kviG~t~ld~  194 (356)
                      ...++..+   .++...|+...+++.+..++ +.-.+++..|. +...- .    .+.|-.  .. ..+...+|.+.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~ss-~~~~~~~~~~~~~~E~~--~~-~~p~~~Yg~sK~~~  149 (314)
T COG0451          75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFASS-VSVVYGDPPPLPIDEDL--GP-PRPLNPYGVSKLAA  149 (314)
T ss_pred             CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeCC-CceECCCCCCCCccccc--CC-CCCCCHHHHHHHHH
Confidence            65444332   34789999999999999998 43334444322 11110 0    001100  11 11222466666555


Q ss_pred             HHHHHHHHHHhCCCCCCCc-ccEEecccC
Q 018433          195 VRANTFVAEVLGLDPRDVD-VPVVGGHAG  222 (356)
Q Consensus       195 ~R~~~~la~~l~v~~~~v~-~~viG~hg~  222 (356)
                      .+.-...++..|++..-++ ..++|....
T Consensus       150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  178 (314)
T COG0451         150 EQLLRAYARLYGLPVVILRPFNVYGPGDK  178 (314)
T ss_pred             HHHHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence            5555555556677777776 467875543

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=97.58  E-value=0.0014  Score=62.27  Aligned_cols=162  Identities=15%  Similarity=0.064  Sum_probs=104.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCC-CCeEEEEeCCCChhhhh--CCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDT-GAVVRGFLGQPQLENAL--TGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al--~~aDiVIi~a  120 (356)
                      |+|.|+|++|++||+.+..|++.|.  +++.+|... -...+.+-....+ ..++...   .-+.+.|  ..-|.||..|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~---~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLDR---ALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEeccccH---HHHHHHHHhcCCCEEEECc
Confidence            6899999999999999999999998  999999865 1111111111111 0111110   1122222  4789999988


Q ss_pred             CCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-----cCCCCccHHHHHHHHHHhCCCCCCCEEEechhh
Q 018433          121 GVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-----SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD  193 (356)
Q Consensus       121 g~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-----tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld  193 (356)
                      +...-..  +.-+.+...|+--...+.+.+.+.+.+-+|.-.     .+|..+-  +     .+..-..|.+.+|-|.|.
T Consensus        76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~P--I-----~E~~~~~p~NPYG~sKlm  148 (329)
T COG1087          76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSP--I-----SETSPLAPINPYGRSKLM  148 (329)
T ss_pred             cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcc--c-----CCCCCCCCCCcchhHHHH
Confidence            7532211  234678899999999999999999977655432     3554421  1     122234577889999888


Q ss_pred             HHHHHHHHHHHhCCCCCCC-cccEEe
Q 018433          194 VVRANTFVAEVLGLDPRDV-DVPVVG  218 (356)
Q Consensus       194 ~~R~~~~la~~l~v~~~~v-~~~viG  218 (356)
                      ..+.-+.+++..+....-+ ..-+.|
T Consensus       149 ~E~iL~d~~~a~~~~~v~LRYFN~aG  174 (329)
T COG1087         149 SEEILRDAAKANPFKVVILRYFNVAG  174 (329)
T ss_pred             HHHHHHHHHHhCCCcEEEEEeccccc
Confidence            8888889988887554333 233445

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.58  E-value=0.001  Score=66.68  Aligned_cols=109  Identities=21%  Similarity=0.213  Sum_probs=67.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC----------------CCeEEEEeCCCChh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------GAVVRGFLGQPQLE  107 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~  107 (356)
                      .+||+|||. |.+|..+|..|+..|+  +++.+|+++..-..  +.....                ...+..   +++  
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~--   72 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT--   72 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ecc--
Confidence            579999999 9999999999999987  99999998621111  221100                011221   223  


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHH
Q 018433          108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPI  170 (356)
Q Consensus       108 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~  170 (356)
                        +++||+||++...|.+...      ..++..+.+.++.|.++. ++.+||+- |.|....-.+
T Consensus        73 --~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~  129 (415)
T PRK11064         73 --PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM  129 (415)
T ss_pred             --cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence              3589999999877653321      122333445556666655 45555554 4677655444

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=97.57  E-value=0.0017  Score=62.92  Aligned_cols=155  Identities=13%  Similarity=0.022  Sum_probs=89.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHh-cCC--CCCeEEEEeC-CC---ChhhhhCC--
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADIS-HMD--TGAVVRGFLG-QP---QLENALTG--  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~-~~~--~~~~v~~~~~-t~---d~~~al~~--  112 (356)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++..   ......+. +..  ....+..+.+ -+   .+.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999887  9999997641   11111111 000  0111222111 12   23445664  


Q ss_pred             CcEEEEcCCCCCCC-C-CcHHHHHHHHHHHHHHHHHHHHHhC-CC-cEEEEecC------CCCccHHHHHHHHHHhCCCC
Q 018433          113 MDLVIIPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCC-PN-ATVNLISN------PVNSTVPIAAEVFKKAGTYD  182 (356)
Q Consensus       113 aDiVIi~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~-p~-a~viv~tN------Pv~~~t~~~~~~~~~~~~~~  182 (356)
                      .|+||.+|+..... . ......+..|+.....+++.+.+.+ .+ ..++.+|.      +.+..       ..+...+.
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~-------~~E~~~~~  151 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIP-------QNETTPFY  151 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCC-------CCCCCCCC
Confidence            59999999864321 1 1123444668778888999888765 22 35554432      11110       01112234


Q ss_pred             CCCEEEechhhHHHHHHHHHHHhCCC
Q 018433          183 PKKLLGVTMLDVVRANTFVAEVLGLD  208 (356)
Q Consensus       183 ~~kviG~t~ld~~R~~~~la~~l~v~  208 (356)
                      +...+|.+.+...++-..+++.+|++
T Consensus       152 p~~~Y~~sK~~~e~~~~~~~~~~~~~  177 (343)
T TIGR01472       152 PRSPYAAAKLYAHWITVNYREAYGLF  177 (343)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCc
Confidence            55667777666666766677777765

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.55  E-value=0.00059  Score=65.72  Aligned_cols=121  Identities=16%  Similarity=0.223  Sum_probs=70.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHH---HHhcCCCCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~---dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      +.+|||+|+|+ |.+|..+|..|...+.  ++.+++++.......   .+........+......++. ++...+|+||+
T Consensus         3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil   78 (313)
T PRK06249          3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLV   78 (313)
T ss_pred             CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEE
Confidence            34589999999 9999999999998887  899999865211110   00000000011100011232 45788999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      +.-..    .            ..+..+.+... .|++.++...|=.+..-     .+.+.  +|+++|++-
T Consensus        79 avK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~~--~~~~~v~~g  127 (313)
T PRK06249         79 GLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLREI--LPAEHLLGG  127 (313)
T ss_pred             EecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHHH--CCCCcEEEE
Confidence            85221    1            12333344433 37888888888877542     22333  677787665

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.55  E-value=0.00086  Score=69.35  Aligned_cols=116  Identities=13%  Similarity=0.065  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhc-----CCC--CCeEEEEeC----CCChhhh
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-----MDT--GAVVRGFLG----QPQLENA  109 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~-----~~~--~~~v~~~~~----t~d~~~a  109 (356)
                      ....|.|+||+|++|..++..|+..|.  +|++++++.  +.....++.+     ...  ...+..+.+    ..++.++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            345799999999999999999998887  899998876  2222222211     000  011222211    1345567


Q ss_pred             hCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +.++|+||+++|............+..|......+++.+.+..- ..||++|
T Consensus       157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV-gRIV~VS  207 (576)
T PLN03209        157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV-NHFILVT  207 (576)
T ss_pred             hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC-CEEEEEc
Confidence            89999999998865332112223355677888888888876643 3555554

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.55  E-value=0.0017  Score=69.04  Aligned_cols=181  Identities=15%  Similarity=0.022  Sum_probs=97.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh--CCCc
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL--TGMD  114 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al--~~aD  114 (356)
                      +-+++||.|+||+|++|++++..|+..+...+|+.+|..........+........++...+ -+|   ....+  .++|
T Consensus         3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D   82 (668)
T PLN02260          3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID   82 (668)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence            44578999999999999999999988754448999997431111111111101122333221 122   11222  6899


Q ss_pred             EEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccHHHHH-HHHHHhCCCCCCCEEEec
Q 018433          115 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAA-EVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       115 iVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t~~~~-~~~~~~~~~~~~kviG~t  190 (356)
                      +||.+|+......  ....++...|+.....+.+.+++.+.-..+|.+|.- +.-...--. .-..+...+.+...+|.+
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~s  162 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSAT  162 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHH
Confidence            9999998643211  123456788999999999999887533456655431 000000000 000000112233456666


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      .+...++-...++..+++..-++ ..++|.+.
T Consensus       163 K~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~  194 (668)
T PLN02260        163 KAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ  194 (668)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence            55555555555566676654444 45667543

>PLN02583 cinnamoyl-CoA reductase

Probab=97.51  E-value=0.0021  Score=61.21  Aligned_cols=113  Identities=15%  Similarity=0.102  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-ch---hHHHHHhcCCCCCeEEEEe----CCCChhhhhCCCcEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP---GVTADISHMDTGAVVRGFL----GQPQLENALTGMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~---g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiV  116 (356)
                      ++|.|+||+|++|++++..|+..|.  +|++++++. ..   ....++...  ...+..+.    ...++.++++++|.|
T Consensus         7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence            4799999999999999999999988  888887643 11   111222111  11222221    113456789999999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +..++.+........+.+..|+.....+.+.+.+..--..||++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S  127 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS  127 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            876654322111234667899999999999988763123455544

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.51  E-value=0.001  Score=64.45  Aligned_cols=98  Identities=20%  Similarity=0.247  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC------CC--CCeEEEEeCCCChhhhhCCCc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------DT--GAVVRGFLGQPQLENALTGMD  114 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~------~~--~~~v~~~~~t~d~~~al~~aD  114 (356)
                      ..|||+|||+ |.+|+.++..|+..++  +|+++|+++.......-.+.      ..  ...+..   ++++.++++++|
T Consensus         3 ~~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD   76 (328)
T PRK14618          3 HGMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGAD   76 (328)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCC
Confidence            3689999999 9999999999998887  89999997521111111110      00  011222   356778889999


Q ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      +||++.-..                .++++.+.   ..|+..++.++|..+
T Consensus        77 ~Vi~~v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi~  108 (328)
T PRK14618         77 FAVVAVPSK----------------ALRETLAG---LPRALGYVSCAKGLA  108 (328)
T ss_pred             EEEEECchH----------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence            999984211                02333332   336677887888654

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.50  E-value=0.0013  Score=57.42  Aligned_cols=93  Identities=25%  Similarity=0.311  Sum_probs=65.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CChhhhhCCCcEEEEcCCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiVIi~ag~  122 (356)
                      |+|+||+|++|+.++..|+..+.  +|+++-+++..  ..+      ...++.+.+.    +++.++++++|.||.+.|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~--~~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSK--AED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGG--HHH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchh--ccc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999996  99999887521  111      1233332221    2456789999999999875


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +.+           ....++.+.+.+++.... .++++|
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s   97 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS   97 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred             hcc-----------cccccccccccccccccc-cceeee
Confidence            543           167778888888876533 444443

...

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=97.49  E-value=0.00046  Score=64.65  Aligned_cols=100  Identities=21%  Similarity=0.249  Sum_probs=67.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP  126 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~  126 (356)
                      |.|+||+|++|++++..|+..+.  +|+.++++......  +..    ..+..... .+..++++++|+||.+++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999998887  99999987611100  000    00111111 23357789999999999875432


Q ss_pred             C----CcHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 018433          127 G----MTRDDLFNINAGIVRTLCEGIAKCCPNA  155 (356)
Q Consensus       127 g----~~r~~~~~~N~~i~~~i~~~i~~~~p~a  155 (356)
                      +    .....+...|+...+.+++.+++.....
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~  104 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQKP  104 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCc
Confidence            2    1234566789999999999999876433

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.49  E-value=0.00042  Score=67.66  Aligned_cols=96  Identities=22%  Similarity=0.385  Sum_probs=61.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEeCCC---chhHHHHHh--cCC--C------CCeEEEEeCCCCh
Q 018433           46 KVAILGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMD--T------GAVVRGFLGQPQL  106 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~------~~~el~L~D~~~---~~g~~~dl~--~~~--~------~~~v~~~~~t~d~  106 (356)
                      ||+|||+ |..|.++|..|..++      ...+|.|+.+++   -......++  |..  +      +..++.   ++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence            7999999 999999999999876      124999998844   122222332  211  1      112333   4688


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433          107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  161 (356)
Q Consensus       107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  161 (356)
                      ++++++||+||++.  |              ...++++++.+..+- ++..++.+|
T Consensus        77 ~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~t  116 (342)
T TIGR03376        77 VEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCI  116 (342)
T ss_pred             HHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence            89999999999973  2              233555556665543 344555554

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=97.46  E-value=0.00048  Score=65.75  Aligned_cols=99  Identities=18%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  122 (356)
                      |||.|+||+|++|++++..|...+   +++.+|.... ....|+.+            ...+.++++  ++|+||.+|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d------------~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSN------------PEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            689999999999999999998776   4677776421 00001111            112344555  58999999875


Q ss_pred             CCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          123 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       123 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ....  ..........|+.....+++.+++..  .+++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence            4211  12233445789999999999998865  3555554

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=97.46  E-value=0.00029  Score=66.09  Aligned_cols=114  Identities=17%  Similarity=0.091  Sum_probs=67.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ..++||+|+||+|||||+++..|+..+.  +|+.+|..- .+....+.|....+..+.+. ..--..-++.+|-|+.+|.
T Consensus        25 ~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~f-tg~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAa  100 (350)
T KOG1429|consen   25 SQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYF-TGRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAA  100 (350)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccc-ccchhhcchhccCcceeEEE-eechhHHHHHhhhhhhhcc
Confidence            4568999999999999999999999986  999999754 22223344443333333321 1112346899999999876


Q ss_pred             CCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          122 VPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       122 ~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ....++  ..-.+.+..|.-.........++.+  +.++.+|
T Consensus       101 pasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aS  140 (350)
T KOG1429|consen  101 PASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLAS  140 (350)
T ss_pred             CCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEee
Confidence            432222  2222333444433334333333332  5555543

>PLN02572 UDP-sulfoquinovose synthase

Probab=97.45  E-value=0.0015  Score=66.02  Aligned_cols=177  Identities=14%  Similarity=0.140  Sum_probs=100.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hh------------HHHHH---hcCCCCCeEEEEeC-
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG------------VTADI---SHMDTGAVVRGFLG-  102 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g------------~~~dl---~~~~~~~~v~~~~~-  102 (356)
                      .+.+||.|+||+|++|++++..|+..|.  +|+++|...  . ..            ....+   .+.. ...+..+.+ 
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~D  121 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGD  121 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECC
Confidence            3457999999999999999999999887  899998532  0 00            00001   0000 011222211 


Q ss_pred             ---CCChhhhhC--CCcEEEEcCCCCCCC-CC-c---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec------CCCCc
Q 018433          103 ---QPQLENALT--GMDLVIIPAGVPRKP-GM-T---RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS------NPVNS  166 (356)
Q Consensus       103 ---t~d~~~al~--~aDiVIi~ag~~~~~-g~-~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t------NPv~~  166 (356)
                         ..++.++++  ++|+||.+|+....+ .. +   ....+..|+.....+.+.+++++....++.+|      +|...
T Consensus       122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~  201 (442)
T PLN02572        122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNID  201 (442)
T ss_pred             CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCC
Confidence               123344555  489999998653211 11 1   12335689999999999999887655555443      21110


Q ss_pred             cH--HH-HHHHHH-Hh--CCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          167 TV--PI-AAEVFK-KA--GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       167 ~t--~~-~~~~~~-~~--~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      +.  ++ ..+... ..  ....+...+|.+.+....+....++.+|++...++ +.++|.+.
T Consensus       202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~  263 (442)
T PLN02572        202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT  263 (442)
T ss_pred             CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence            00  00 000000 00  01234567888876666666777788888776664 56778653

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=97.43  E-value=0.0013  Score=63.57  Aligned_cols=164  Identities=15%  Similarity=0.048  Sum_probs=89.3

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhc-C-CCCCeEEEEe----CCCChhhhh
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISH-M-DTGAVVRGFL----GQPQLENAL  110 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~-~-~~~~~v~~~~----~t~d~~~al  110 (356)
                      |..+.++|.|+||+|++|++++..|+..|.  +|+++|.+..   ......+.. . .....+....    ...++.+++
T Consensus         2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   79 (340)
T PLN02653          2 GDPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWL   79 (340)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHH
Confidence            445567999999999999999999999887  8999987541   111111110 0 0011122211    112334456


Q ss_pred             CC--CcEEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCC----cEEEEecCC-CCccHHHHHHHHHHhCCC
Q 018433          111 TG--MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPN----ATVNLISNP-VNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       111 ~~--aDiVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~----a~viv~tNP-v~~~t~~~~~~~~~~~~~  181 (356)
                      ++  .|+||.+|+......  ......+..|+.....+++.+.+....    ..++.+|.- +.-...   ....+...+
T Consensus        80 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~---~~~~E~~~~  156 (340)
T PLN02653         80 DDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTP---PPQSETTPF  156 (340)
T ss_pred             HHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCC---CCCCCCCCC
Confidence            54  599999998643211  122334567888889999998887643    244444310 000000   000011112


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCC
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLD  208 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~  208 (356)
                      .+...+|.+......+-..+++.+++.
T Consensus       157 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~  183 (340)
T PLN02653        157 HPRSPYAVAKVAAHWYTVNYREAYGLF  183 (340)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHcCCe
Confidence            344556666555555555566666653

>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases

Probab=97.35  E-value=0.0013  Score=60.73  Aligned_cols=78  Identities=10%  Similarity=0.045  Sum_probs=52.1

Q ss_pred             CcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 018433          265 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK  340 (356)
Q Consensus       265 g~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa  340 (356)
                      ++..|+  .   .++++|.+|.+   .++.++ .++|.+   |+|.++++||+|+++|+.++.. ++|++..++++....
T Consensus       134 ~~~~~a--~---~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~  204 (232)
T PF11975_consen  134 GSGEYA--E---AAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVK  204 (232)
T ss_dssp             TTSCHH--H---HHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHH
T ss_pred             cccchH--H---HHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHH
Confidence            455555  3   44555577754   366665 678986   8899999999999999999777 699999999888766


Q ss_pred             HHHHHHHHHhh
Q 018433          341 KELAGSIQKGI  351 (356)
Q Consensus       341 ~~l~~~~~~~~  351 (356)
                      ..-+-.++.++
T Consensus       205 ~~e~L~veAa~  215 (232)
T PF11975_consen  205 AYERLTVEAAL  215 (232)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            65555555443

It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.30  E-value=0.0019  Score=61.27  Aligned_cols=64  Identities=23%  Similarity=0.273  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||. |.+|..++..|...+.  +|.++|.++ ....+.+   ..   .+..  .+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~---~g---~~~~--~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIE---RG---LVDE--ASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHH---CC---Cccc--ccCCH-hHhcCCCEEEEcC
Confidence            68999998 9999999999998887  899999875 2111211   11   1111  12444 5689999999985

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.30  E-value=0.0016  Score=62.00  Aligned_cols=76  Identities=24%  Similarity=0.328  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .+..||+|+|| |.+|.++++.|+..+. .+|.++|++.  +++.+.++.+..  +..... ...+++++++++|+||.+
T Consensus       125 ~~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~-~~~~~~~~~~~aDiVIna  199 (284)
T PRK12549        125 ASLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF--PAARAT-AGSDLAAALAAADGLVHA  199 (284)
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC--CCeEEE-eccchHhhhCCCCEEEEC
Confidence            34569999999 9999999999998774 4899999986  455555664432  122222 123455678999999997


Q ss_pred             --CCC
Q 018433          120 --AGV  122 (356)
Q Consensus       120 --ag~  122 (356)
                        +|+
T Consensus       200 Tp~Gm  204 (284)
T PRK12549        200 TPTGM  204 (284)
T ss_pred             CcCCC
Confidence              454

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.30  E-value=0.0016  Score=63.44  Aligned_cols=98  Identities=22%  Similarity=0.258  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .+.++|.|+||+|++|+.++..|....-+.+|++++++.  +...+.++.+.    .+      .++++++.++|+||.+
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~i------~~l~~~l~~aDiVv~~  222 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----KI------LSLEEALPEADIVVWV  222 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----cH------HhHHHHHccCCEEEEC
Confidence            345689999999999999999997643345899999865  22222222211    11      2467899999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  167 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~  167 (356)
                      ++.+...-.+..++                  .+..+++-++.|=|+-
T Consensus       223 ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd  252 (340)
T PRK14982        223 ASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD  252 (340)
T ss_pred             CcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence            88764211222111                  2567888889998875

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.29  E-value=0.0025  Score=62.99  Aligned_cols=76  Identities=22%  Similarity=0.234  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      +|||.|||| |.||+.+|..|++.+- .+|.+-|+... ...+.+..+... ...+... ....+.+++++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAA-DVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEeccc-ChHHHHHHHhcCCEEEEeCC
Confidence            479999999 9999999999999875 59999999751 112222221111 0112221 12345688899999999975


Q ss_pred             C
Q 018433          122 V  122 (356)
Q Consensus       122 ~  122 (356)
                      .
T Consensus        78 ~   78 (389)
T COG1748          78 P   78 (389)
T ss_pred             c
Confidence            3

>PLN02253 xanthoxin dehydrogenase

Probab=97.28  E-value=0.0058  Score=57.21  Aligned_cols=146  Identities=17%  Similarity=0.192  Sum_probs=81.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|.+.  ......++..   ...+..+. .-+|   .+++++      
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   92 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDKF   92 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999998887  899999865  2222223321   11222211 1122   222333      


Q ss_pred             -CCcEEEEcCCCCCCC-C----Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          112 -GMDLVIIPAGVPRKP-G----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~-g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                       ..|++|..+|..... +    .+   -...+..|+.....+.+.+...   ...+.+++++......            
T Consensus        93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------  160 (280)
T PLN02253         93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI------------  160 (280)
T ss_pred             CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc------------
Confidence             689999999864321 1    11   2344566665554444444322   2346666665533211            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhC
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                      +.+..-.+|.+......+-+.++..++
T Consensus       161 ~~~~~~~Y~~sK~a~~~~~~~la~e~~  187 (280)
T PLN02253        161 GGLGPHAYTGSKHAVLGLTRSVAAELG  187 (280)
T ss_pred             cCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence            122223466655444566677777775

>PRK07680 late competence protein ComER; Validated

Probab=97.23  E-value=0.0028  Score=59.80  Aligned_cols=97  Identities=16%  Similarity=0.228  Sum_probs=62.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      |||+|||+ |.+|..++..|...+.  ..++.++|++...  ...+.+..  ..+..   +.+..+++.++|+||++.- 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~~--~g~~~---~~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKERY--PGIHV---AKTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHHc--CCeEE---ECCHHHHHHhCCEEEEecC-
Confidence            58999998 9999999999988773  2479999987521  12222211  12332   2355677899999999851 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  165 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~  165 (356)
                      |               ..+.++.+.+..+- ++.+|+.++|++.
T Consensus        72 p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            1               11334444554443 5678888888774

>PLN02240 UDP-glucose 4-epimerase

Probab=97.22  E-value=0.0064  Score=58.85  Aligned_cols=115  Identities=18%  Similarity=0.165  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEe----CCCChhhhhC--CC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFL----GQPQLENALT--GM  113 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~----~t~d~~~al~--~a  113 (356)
                      .+||.|+||+|++|++++..|+..+.  +|+++|...  .......+.+..  ....++...    ...++.++++  ++
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   82 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF   82 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence            46999999999999999999998886  899998643  111111111110  011122211    1123333443  68


Q ss_pred             cEEEEcCCCCCC-CC-CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          114 DLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       114 DiVIi~ag~~~~-~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |+||.+++.... .. ......+..|+.....+++.+.+.... .++.+|
T Consensus        83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  131 (352)
T PLN02240         83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSS  131 (352)
T ss_pred             CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            999999886421 11 234567789999999999988775433 344444

>PRK05865 hypothetical protein; Provisional

Probab=97.21  E-value=0.0045  Score=67.19  Aligned_cols=104  Identities=17%  Similarity=0.156  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      |||.|+||+|++|++++..|+..|.  +|+.+|.+....    +.. . ...+.. .....++.++++++|+||.+++..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            6899999999999999999998887  899999764110    110 0 011111 111234556789999999998753


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      . +      ....|+.....+++.+++... ..++++|.+.
T Consensus        73 ~-~------~~~vNv~GT~nLLeAa~~~gv-kr~V~iSS~~  105 (854)
T PRK05865         73 G-R------NDHINIDGTANVLKAMAETGT-GRIVFTSSGH  105 (854)
T ss_pred             c-c------hHHHHHHHHHHHHHHHHHcCC-CeEEEECCcH
Confidence            2 1      346788888889888887653 3566677664

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.006  Score=56.39  Aligned_cols=117  Identities=22%  Similarity=0.302  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCC-CCeEEEEeCCCChhhhhC--------CC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALT--------GM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~--------~a  113 (356)
                      +++.|+||+|.+|..++..|+..|.  +|+++|.+..  .....++..... ...... ....+..++++        ..
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAGNAWTGALDV-TDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCceEEEEecC-CCHHHHHHHHHHHHHHcCCCC
Confidence            3699999999999999999999887  8999998752  212222221110 001111 01112222332        45


Q ss_pred             cEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecCCC
Q 018433          114 DLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNPV  164 (356)
Q Consensus       114 DiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNPv  164 (356)
                      |+||.++|......   .   +-...+..|+.....+.+.+..   ..+.+.+++++...
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~  138 (260)
T PRK08267         79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSAS  138 (260)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchh
Confidence            99999998753211   1   1234566777766666555543   23456666665543

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=97.20  E-value=0.0028  Score=60.30  Aligned_cols=108  Identities=11%  Similarity=0.117  Sum_probs=65.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCC-hhhhh-----CCCcEEEEcC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVIIPA  120 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d-~~~al-----~~aDiVIi~a  120 (356)
                      |.|+||+|++|++++..|+..|. ..+.++|..........+.+... .+...   ..+ .++++     .++|+||.+|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999998875 25667787541110011111110 00000   011 12222     3799999998


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +.+.............|+....++.+.+.+..-  .+|..|
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S  115 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence            754333333445678899999999999887643  455543

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0065  Score=64.10  Aligned_cols=108  Identities=14%  Similarity=0.111  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----------CChhhhhCCCc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----------PQLENALTGMD  114 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----------~d~~~al~~aD  114 (356)
                      |||.|+||+|++|++++..|+......+|+.++++.......++........++.+.+.          .++ +.++++|
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~~D   79 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGDID   79 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcCCC
Confidence            68999999999999999999852223389999986522221122111000122222110          112 2348999


Q ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018433          115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN  154 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~  154 (356)
                      +||.+|+... ......+....|+.....+++.+.+....
T Consensus        80 ~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~  118 (657)
T PRK07201         80 HVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAA  118 (657)
T ss_pred             EEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCC
Confidence            9999987532 22334456678999999999988876433

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.02  Score=52.25  Aligned_cols=116  Identities=19%  Similarity=0.040  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---Chhhhh----CCCc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENAL----TGMD  114 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al----~~aD  114 (356)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+   +.++.+    +..|
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d   78 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPD   78 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence            5899999999999999999998887  899999876  222233333221 122322211 11   222222    2459


Q ss_pred             EEEEcCCCCCC---CCCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          115 LVIIPAGVPRK---PGMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       115 iVIi~ag~~~~---~g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                      +||..+|....   .+.+.   .+.+..|......+.+.+..+   ...+.++++|..
T Consensus        79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  136 (243)
T PRK07102         79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV  136 (243)
T ss_pred             EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence            99998875321   12222   234566776666666665543   234667766643

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=97.17  E-value=0.0021  Score=60.25  Aligned_cols=95  Identities=23%  Similarity=0.305  Sum_probs=66.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCC--cEEEEcCCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP  123 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a--DiVIi~ag~~  123 (356)
                      ||.|+||+|++|++++..|...+.  ++++++...     .|+.+            ..++.++++++  |+||.+++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999998887  899888741     12211            12345566665  9999998864


Q ss_pred             CCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          124 RKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       124 ~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ....  .........|+.....+++.+.+...  .++++|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  23445667889999999999877643  455554

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK08643 acetoin reductase; Validated

Probab=97.16  E-value=0.02  Score=52.67  Aligned_cols=116  Identities=20%  Similarity=0.216  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +++++|.+.  ......++.+..  ..+..+. .-+|.   .+++       .
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3789999999999999999998887  899999876  222333343321  1222111 11221   1222       3


Q ss_pred             CCcEEEEcCCCCC-CCC--Cc---HHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCCC
Q 018433          112 GMDLVIIPAGVPR-KPG--MT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       112 ~aDiVIi~ag~~~-~~g--~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      +.|+||.++|... .+-  .+   -...+..|+....    .+.+.+.+..+++.++++|...
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~  141 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQA  141 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccc
Confidence            6899999998642 111  11   1233455655433    3334444334456777776543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.14  E-value=0.0033  Score=60.37  Aligned_cols=67  Identities=27%  Similarity=0.261  Sum_probs=47.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +||+|||+ |.+|..++..|...+...+|.++|+++ ....+.   ...  .....   ..+.++++++||+||++.
T Consensus         7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~---~~g--~~~~~---~~~~~~~~~~aDvViiav   74 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARAR---ELG--LGDRV---TTSAAEAVKGADLVILCV   74 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH---hCC--CCcee---cCCHHHHhcCCCEEEECC
Confidence            58999998 999999999999887656899999875 111111   111  11111   234567889999999986

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.14  E-value=0.018  Score=53.03  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------~  111 (356)
                      .+|.|+||+|.+|.+++..|+..+.  +|+++|.+.  ......++........+..+. ..+|.   ..++       .
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3799999999999999999999887  899999875  222222332211101222211 11221   1222       3


Q ss_pred             CCcEEEEcCCCCCCC---CCcH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 018433          112 GMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      ..|+||.++|.+...   ....   ...+..|+..    .+.+.+.+.+..+++.++++|...
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~  143 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS  143 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence            579999999865321   1222   2233455544    445555555444456777776643

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.12  E-value=0.0091  Score=56.16  Aligned_cols=120  Identities=18%  Similarity=0.187  Sum_probs=79.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCChhh------
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLEN------  108 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~------  108 (356)
                      .++...+.|+||++-+|..+|..|+.+|.  .|+|+.+++  +...+.++.+.. ...+..+..    +++.+.      
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~   79 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK   79 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence            45567899999999999999999999999  999999987  667777777643 222322211    122211      


Q ss_pred             -hhCCCcEEEEcCCCCCCC-----C-CcHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 018433          109 -ALTGMDLVIIPAGVPRKP-----G-MTRDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP  163 (356)
Q Consensus       109 -al~~aDiVIi~ag~~~~~-----g-~~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP  163 (356)
                       ..-..|+.|..||...-.     . .+-.+++.-|+-.+..+...+-..-   -.+.|||++.-
T Consensus        80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~  144 (265)
T COG0300          80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSA  144 (265)
T ss_pred             hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEech
Confidence             112689999999975321     1 2234667788766666655554332   35677777543

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.11  E-value=0.0035  Score=63.35  Aligned_cols=66  Identities=24%  Similarity=0.374  Sum_probs=47.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+||||+|.+|..++..|...+.  +|.++|.+....  .++.... .  +..   +++..+++.+||+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~-g--v~~---~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL-G--VEY---ANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc-C--Cee---ccCHHHHhccCCEEEEec
Confidence            6999998559999999999998887  899999875211  1111111 1  121   346678899999999985

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.11  E-value=0.0027  Score=59.45  Aligned_cols=96  Identities=14%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      +|||+|||+ |.+|..++..|...+. ..++.++|++...  ...+.+..   .+..   +++..+.+.++|+||++.- 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence            479999999 9999999999987762 2478999987511  11222210   1122   2355677899999999841 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                                     -..+.++.+.+..+. +..|+.++|-+.
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           112344445554443 456666777653

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.11  E-value=0.0035  Score=61.40  Aligned_cols=109  Identities=21%  Similarity=0.238  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEe----CCCChhhhhCCCcEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI  117 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiVI  117 (356)
                      ++.++.|+||+|++|.+++..|...+...||.++|.... ...-.+.... ....++...    ...+...|+.++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence            455899999999999999999999886669999999762 1111111111 112222221    124567899999 777


Q ss_pred             EcCCCC-CCCCC-cHHHHHHHHHHHHHHHHHHHHHhCC
Q 018433          118 IPAGVP-RKPGM-TRDDLFNINAGIVRTLCEGIAKCCP  153 (356)
Q Consensus       118 i~ag~~-~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p  153 (356)
                      +.+..+ ..... .|......|+...+.+.+.+.+.+=
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v  118 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGV  118 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCC
Confidence            754332 12223 4667778999999999999998763

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.013  Score=53.98  Aligned_cols=36  Identities=31%  Similarity=0.523  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.+++.|+||+|.+|+.++..|+..|.  +|++++++.
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456999999999999999999999887  899999875

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.11  E-value=0.0045  Score=57.01  Aligned_cols=115  Identities=16%  Similarity=0.216  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .+++.|+||+|.+|++++..|+..|.  +|++++.++  ......++.+..  ..+..+.. -+|.   .+++       
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999888  899999877  223333444322  22222211 1222   1222       


Q ss_pred             CCCcEEEEcCCCCCCC-----C-CcHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKP-----G-MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~-----g-~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ...|+||.++|.....     . ......+..|...    .+.+.+.+.+.++.+.|+++|.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss  144 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGS  144 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcc
Confidence            3489999999864211     1 1123344566665    5556666633344456666653

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.10  E-value=0.0028  Score=59.30  Aligned_cols=66  Identities=18%  Similarity=0.320  Sum_probs=46.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-eCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||++||. |.+|+.++..|+..++  ..+|+.+ |++...  ...+.+.  .  +..   ..+..+++++||+||++.
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~--g--~~~---~~~~~e~~~~aDvVil~v   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL--G--VKT---AASNTEVVKSSDVIILAV   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc--C--CEE---eCChHHHHhcCCEEEEEE
Confidence            79999998 9999999999998774  4578888 765421  2222221  1  222   134567789999999985

>PRK05717 oxidoreductase; Validated

Probab=97.10  E-value=0.0045  Score=57.13  Aligned_cols=145  Identities=13%  Similarity=0.117  Sum_probs=81.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------hCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l~~a  113 (356)
                      ++|.|+||+|.+|++++..|+..+.  +++++|.+....... ..+..  ..+..+. .-+|.   .++       +...
T Consensus        11 k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717         11 RVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALG--ENAWFIAMDVADEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcC--CceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999998886  899999865211111 11111  1111111 01221   111       1347


Q ss_pred             cEEEEcCCCCCCCC-----Cc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          114 DLVIIPAGVPRKPG-----MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       114 DiVIi~ag~~~~~g-----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      |++|..+|......     .+   -...+..|......+.+.+..+-  ..+.+|++|.-....            +.+.
T Consensus        86 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~------------~~~~  153 (255)
T PRK05717         86 DALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQ------------SEPD  153 (255)
T ss_pred             CEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcC------------CCCC
Confidence            99999998653211     12   23456677777777777765432  345677766433211            1222


Q ss_pred             CCEEEechhhHHHHHHHHHHHhC
Q 018433          184 KKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       184 ~kviG~t~ld~~R~~~~la~~l~  206 (356)
                      .-.+|.+......+-+.+++.++
T Consensus       154 ~~~Y~~sKaa~~~~~~~la~~~~  176 (255)
T PRK05717        154 TEAYAASKGGLLALTHALAISLG  176 (255)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhc
Confidence            33456644333456677777775

>PRK12320 hypothetical protein; Provisional

Probab=97.09  E-value=0.0021  Score=68.18  Aligned_cols=101  Identities=14%  Similarity=0.105  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||.|+||+|++|++++..|+..++  +|+.+|.....     ..+... ..+..-.....+.+++.++|+||++++...
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~v-e~v~~Dl~d~~l~~al~~~D~VIHLAa~~~   72 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRV-DYVCASLRNPVLQELAGEADAVIHLAPVDT   72 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCc-eEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence            6999999999999999999998887  99999975411     111000 011110001124456789999999987521


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                        ..    ....|+....++++.+++...  ++|.+|
T Consensus        73 --~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         73 --SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             --cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence              11    124688888888888887653  555554

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.09  E-value=0.0013  Score=54.29  Aligned_cols=73  Identities=21%  Similarity=0.232  Sum_probs=47.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHh-c-CCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-H-MDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~-~-~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ||+|+||+|.+|..++..|...+.+.-+.+++.....|..+.-. . ......+....  .+. +.+.++|+||++.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~Dvvf~a~~   75 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADP-EELSDVDVVFLALP   75 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSG-HHHTTESEEEE-SC
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cch-hHhhcCCEEEecCc
Confidence            79999999999999999999877676677777765233222111 1 11122333321  343 66899999999853

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=97.09  E-value=0.0026  Score=57.50  Aligned_cols=168  Identities=17%  Similarity=0.122  Sum_probs=93.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCC--cEEEEcCCCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP  123 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a--DiVIi~ag~~  123 (356)
                      |.|+||+|++|+.++..|+.++.  +++-+.... ............. ...... ...++.+++++.  |.||.+++.+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~-~~~dl~-~~~~~~~~~~~~~~d~vi~~a~~~   76 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNVEF-VIGDLT-DKEQLEKLLEKANIDVVIHLAAFS   76 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTEEE-EESETT-SHHHHHHHHHHHTESEEEEEBSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceEEE-EEeecc-ccccccccccccCceEEEEeeccc
Confidence            78999999999999999999988  655555444 2222211111000 001100 113455667777  9999999865


Q ss_pred             C--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHH
Q 018433          124 R--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  201 (356)
Q Consensus       124 ~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~l  201 (356)
                      .  .....-.+.+..|+...+.+.+.+.+... ..++..+. ..+-..--...+.+...+.+...+|.+.....++-..+
T Consensus        77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~  154 (236)
T PF01370_consen   77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLRDY  154 (236)
T ss_dssp             SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            3  01134567788999999999999998876 45555543 21110000000000000112223455444444555666


Q ss_pred             HHHhCCCCCCCc-ccEEecc
Q 018433          202 AEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       202 a~~l~v~~~~v~-~~viG~h  220 (356)
                      ++..+++...++ ..++|.+
T Consensus       155 ~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  155 AKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHTSEEEEEEESEEESTT
T ss_pred             cccccccccccccccccccc
Confidence            666677766664 4566655

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02686 cinnamoyl-CoA reductase

Probab=97.09  E-value=0.003  Score=62.18  Aligned_cols=118  Identities=10%  Similarity=0.108  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcC---C-CCCeEEEEe----CCCChhhhhCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM---D-TGAVVRGFL----GQPQLENALTG  112 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~---~-~~~~v~~~~----~t~d~~~al~~  112 (356)
                      .+.++|.|+||+|++|++++..|+..|.  +|+++..+. ......++...   . ....+..+.    ...++.+++++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~  128 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG  128 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence            4567999999999999999999999987  887765543 11111122110   0 001222211    11234567889


Q ss_pred             CcEEEEcCCCCCCCCC--cHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          113 MDLVIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                      +|.||.+++.....+.  ....+...|+....++.+.+.+.. .. .+|.+|.
T Consensus       129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS  180 (367)
T PLN02686        129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSS  180 (367)
T ss_pred             ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEecc
Confidence            9999998875322221  123445678888999999988752 33 4444443

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.08  E-value=0.0077  Score=55.55  Aligned_cols=145  Identities=17%  Similarity=0.152  Sum_probs=80.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEE-EeCCCChhhhh-------CCCc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENAL-------TGMD  114 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~aD  114 (356)
                      .++.|+||+|.+|..++..|+..|.  +++++|.+..  .....++....  ..+.. .....+.++++       ...|
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPAA--IAVSLDVTRQDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCce--EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999987  8999998762  22222222110  00110 00111222222       3689


Q ss_pred             EEEEcCCCCCC-C--C---CcHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          115 LVIIPAGVPRK-P--G---MTRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       115 iVIi~ag~~~~-~--g---~~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      ++|..+|.... +  .   ..-...+..|+.....+.+.+..+    .+.+.|+++|.....            .+.++.
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~  150 (257)
T PRK07067         83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGR------------RGEALV  150 (257)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhC------------CCCCCC
Confidence            99999885421 1  1   112344567776666666665433    234667776653321            123333


Q ss_pred             CEEEechhhHHHHHHHHHHHh
Q 018433          185 KLLGVTMLDVVRANTFVAEVL  205 (356)
Q Consensus       185 kviG~t~ld~~R~~~~la~~l  205 (356)
                      -.++.+......+-+.++..+
T Consensus       151 ~~Y~~sK~a~~~~~~~la~e~  171 (257)
T PRK07067        151 SHYCATKAAVISYTQSAALAL  171 (257)
T ss_pred             chhhhhHHHHHHHHHHHHHHh
Confidence            445554433334556666665

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.08  E-value=0.0057  Score=55.23  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   79 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~   79 (356)
                      .||+|+|+ |.+|+.++..|+..|. .+|+|+|.+
T Consensus        22 ~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        22 ATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             CcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            49999999 9999999999999886 489999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.08  E-value=0.021  Score=52.06  Aligned_cols=114  Identities=18%  Similarity=0.270  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++.  ......++.+   ...+..+.. -.|   ...++       
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERF   79 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999998887  899999976  2222233332   112222211 112   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  162 (356)
                      ...|+||..+|......    .+   -.+.+..|......+.+.+..+.   ....++++|.
T Consensus        80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  141 (251)
T PRK07231         80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVAS  141 (251)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            35799999988632111    11   12345556654444444444332   2345555544

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.08  E-value=0.0064  Score=60.83  Aligned_cols=128  Identities=20%  Similarity=0.188  Sum_probs=71.0

Q ss_pred             ccCCCchhhhhhhhh-hhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCC
Q 018433           17 HLYPPNLQMEENSCL-RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA   95 (356)
Q Consensus        17 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~   95 (356)
                      |++|.+-.|-.+.-| -+..-++- ..+.++|.|+||+|.+|.+++..|+..|.  +++++|.+... ....+.+.....
T Consensus       151 ~~~~~~~~~~~~~~~~d~~~~ta~-sl~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~~v  226 (406)
T PRK07424        151 HFDNQNAYYCGTFTLVDKLMGTAL-SLKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDLPV  226 (406)
T ss_pred             EeccccceeeeeEEEeehhcCccc-CCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCCCe
Confidence            667776666544322 22222222 23456899999999999999999998887  88999986511 111121111111


Q ss_pred             -eEEE-EeCCCChhhhhCCCcEEEEcCCCCCCCCCcH---HHHHHHHHHHHHHHHHHH
Q 018433           96 -VVRG-FLGQPQLENALTGMDLVIIPAGVPRKPGMTR---DDLFNINAGIVRTLCEGI  148 (356)
Q Consensus        96 -~v~~-~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r---~~~~~~N~~i~~~i~~~i  148 (356)
                       .+.. ....++..+.+.+.|++|..+|.......+.   .+.+..|......+.+.+
T Consensus       227 ~~v~~Dvsd~~~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~  284 (406)
T PRK07424        227 KTLHWQVGQEAALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELF  284 (406)
T ss_pred             EEEEeeCCCHHHHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111 0011223345788999999988643222222   234556665544444443

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.08  E-value=0.012  Score=54.49  Aligned_cols=114  Identities=16%  Similarity=0.154  Sum_probs=64.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------hC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l~  111 (356)
                      |+|.|+||+|.+|..++..|+..|.  +|++.|+++  +.....++.+..   .+..+. .-+|   .+++       +.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g   75 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG   75 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999987  899999876  222333343211   111111 1122   2222       24


Q ss_pred             CCcEEEEcCCCCC-CC----CCcHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPR-KP----GMTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~-~~----g~~r~~---~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      ..|++|..+|... .+    ..+..+   .+..|.    ...+...+.+.+....+.|+++|.-
T Consensus        76 ~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~  139 (259)
T PRK08340         76 GIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSV  139 (259)
T ss_pred             CCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence            6899999998642 11    112222   222332    2234445554433345677777643

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.05  E-value=0.0044  Score=59.31  Aligned_cols=95  Identities=19%  Similarity=0.229  Sum_probs=59.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||+|||. |.+|+.++..|...++  +|.++|++...  +..+.....    .......++.+.+.++|+||++.  |.
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~v--p~   69 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMV--PH   69 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEc--Cc
Confidence            68999999 9999999999998887  99999987621  222222111    11111123334567899999974  10


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  164 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv  164 (356)
                        +            .+.++++.+.... |+.+||..||..
T Consensus        70 --~------------~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        70 --G------------IVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             --h------------HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence              0            2344444555444 566777777654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.04  E-value=0.0085  Score=63.88  Aligned_cols=118  Identities=21%  Similarity=0.254  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC-----
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  111 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-----  111 (356)
                      ..++|.|+||+|.+|++++..|+..|.  +|+++|++.  +.....++........+..+. .-+|   .++++.     
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~  490 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA  490 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999887  999999876  222223333111011111111 1122   223333     


Q ss_pred             --CCcEEEEcCCCCCC-C--CCcH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 018433          112 --GMDLVIIPAGVPRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       112 --~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                        +.|+||..+|.... +  ..+.   ...+..|+.    ..+...+.+.+....+.|+++|.
T Consensus       491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS  553 (676)
T TIGR02632       491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIAS  553 (676)
T ss_pred             cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence              68999999986431 1  1111   112233333    33455566655444555666553

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.013  Score=53.10  Aligned_cols=114  Identities=18%  Similarity=0.163  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------~  111 (356)
                      ++|.|+||+|.+|+.++..|+..+.  +|++++++.  +.....++...   ..+..+.. -+|   +.+++       .
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG   81 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999998877  899999876  22222333321   11222111 122   22222       3


Q ss_pred             CCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNP  163 (356)
                      ..|+||..+|.....   ..+.   .+.+..|+.....+.+.+.+.  ...+.++++|..
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            789999998754321   1122   233555665555555554432  234566666654

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.03  E-value=0.00089  Score=56.09  Aligned_cols=102  Identities=24%  Similarity=0.243  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..+||+|||+ |.||.+++..|...++  +|.-+-... ...+..+.+..  .....    .++.+.+++||++|++...
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iavpD   78 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAVPD   78 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S-C
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEech
Confidence            4689999999 9999999999999887  666654432 22223333321  12221    2345778999999998521


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHh--C-CCcEEEEec--CCCCccHHH
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--C-PNATVNLIS--NPVNSTVPI  170 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~-p~a~viv~t--NPv~~~t~~  170 (356)
                               |       .+.++++.|..+  . |+.+|+=.|  -+++++.++
T Consensus        79 ---------d-------aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   79 ---------D-------AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             ---------C-------HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred             ---------H-------HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence                     1       266788888876  2 444444332  667777653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.03  E-value=0.0068  Score=55.73  Aligned_cols=112  Identities=11%  Similarity=0.127  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCC---hhhh-------hC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l~  111 (356)
                      |+|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++.     ..+..+.. -+|   .+++       +.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~i~~~~~~~~~~~~   73 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWR   73 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc-----cceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            6899999999999999999998887  8999998752  11111111     11111110 112   2222       24


Q ss_pred             CCcEEEEcCCCCC--CC--CCcH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP  163 (356)
                      +.|+||..+|...  .+  ..+.   ...+..|......+.+.+.++.   ..+.++++|..
T Consensus        74 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  135 (248)
T PRK10538         74 NIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGST  135 (248)
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCc
Confidence            7999999988632  11  1222   2345566665444444444322   23567766654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.03  E-value=0.0095  Score=54.87  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.++  ......++.+..  ..+..+.. -+|   ..+++       
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999998887  899999876  222222333221  12222111 112   22222       


Q ss_pred             CCCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP  163 (356)
                      ...|+||..+|.... +  ..+   -...+..|+.....+.+.+.++.   ..+.++++|..
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV  147 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence            357999999886421 1  111   23445677766666666665542   34567777654

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.01  E-value=0.0055  Score=58.08  Aligned_cols=109  Identities=11%  Similarity=0.119  Sum_probs=66.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhh----hCCCcEEEEcCCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA----LTGMDLVIIPAGV  122 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a----l~~aDiVIi~ag~  122 (356)
                      |.|+||+|++|++++..|...+.. +++++|..........+........+..   ...++..    +.++|+||.+|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGIT-DILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCc-eEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence            579999999999999999988742 6888886542111111111000011111   1112222    2489999999986


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +.....+.......|+.....+.+.+.+...  .++.+|
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            4322233455678899999999999887653  355554

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.00  E-value=0.0078  Score=55.52  Aligned_cols=70  Identities=10%  Similarity=0.181  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +.+||+|||+ |.+|.+++..++..+.  ..+++.++.+.. ....++.+..   .+..   ++|+++.++++|+||++.
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav   74 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence            4579999999 9999999998887652  345777876421 1122232211   1222   246678889999999984

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.99  E-value=0.0037  Score=59.48  Aligned_cols=64  Identities=19%  Similarity=0.273  Sum_probs=46.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||. |.+|..++..|+..+.  +|.++|++....  ..+....    +..   .+++++++++||+||++.
T Consensus         3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITML   66 (296)
T ss_pred             ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            68999999 9999999999998887  899999875211  1122111    111   245678889999999985

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.99  E-value=0.0079  Score=59.80  Aligned_cols=113  Identities=19%  Similarity=0.171  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh--HHHHHhcCCCCCe-EEE-EeCCCChhhhhC----C
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTGAV-VRG-FLGQPQLENALT----G  112 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g--~~~dl~~~~~~~~-v~~-~~~t~d~~~al~----~  112 (356)
                      +.+||.|+||+|++|++++..|+..+.  +|++++++.  ...  ...++........ +.. .....++.++++    +
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~  136 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP  136 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence            346999999999999999999998887  899999865  111  1111111100111 111 111123445566    5


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +|+||.+++.+.. +  ..+.+..|......+.+.+++..-. .++++|
T Consensus       137 ~D~Vi~~aa~~~~-~--~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS  181 (390)
T PLN02657        137 VDVVVSCLASRTG-G--VKDSWKIDYQATKNSLDAGREVGAK-HFVLLS  181 (390)
T ss_pred             CcEEEECCccCCC-C--CccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            9999997764321 1  1133456777788888888776533 344444

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.98  E-value=0.0032  Score=59.89  Aligned_cols=63  Identities=17%  Similarity=0.283  Sum_probs=46.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ||+|||. |.+|+.++..|+..++  +|+++|++..  ....+.+..  .  ..   .++..+++++||+||++.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~--~~~~~~~~g--~--~~---~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPE--VADELLAAG--A--VT---AETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHH--HHHHHHHCC--C--cc---cCCHHHHHhcCCEEEEec
Confidence            6999999 9999999999998887  9999998751  112222221  1  11   235668899999999985

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.97  E-value=0.0042  Score=52.97  Aligned_cols=74  Identities=24%  Similarity=0.329  Sum_probs=50.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .+.++|+|+|+ |.+|..++..|...+ ..++.++|.+.  ....+.++...  .....    ..|..+.++++|+||.+
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~Dvvi~~   88 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL--GIAIA----YLDLEELLAEADLIINT   88 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc--cccee----ecchhhccccCCEEEeC
Confidence            44679999999 999999999998876 45899999876  22223222211  00111    13455668999999998


Q ss_pred             CCCC
Q 018433          120 AGVP  123 (356)
Q Consensus       120 ag~~  123 (356)
                      ...+
T Consensus        89 ~~~~   92 (155)
T cd01065          89 TPVG   92 (155)
T ss_pred             cCCC
Confidence            7543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.017  Score=53.13  Aligned_cols=156  Identities=13%  Similarity=0.078  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++.  ......++....  ..+..+.. -+|   ..++++      
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   82 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY   82 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999998886  899999876  222333343321  12222211 122   222333      


Q ss_pred             -CCcEEEEcCCCCCCC----CCcH---HHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          112 -GMDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                       ..|+||..+|.....    ..+.   ...+..|+.....+.+    .+.+. ..+.++++|......            
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS~~~~~------------  149 (253)
T PRK06172         83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTASVAGLG------------  149 (253)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhcc------------
Confidence             459999998864221    1222   2334566655544433    33322 345666665533211            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      +.+..-.++.+.-....+-+.++..+  .+..+++..+.
T Consensus       150 ~~~~~~~Y~~sKaa~~~~~~~la~e~--~~~~i~v~~i~  186 (253)
T PRK06172        150 AAPKMSIYAASKHAVIGLTKSAAIEY--AKKGIRVNAVC  186 (253)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHh--cccCeEEEEEE
Confidence            22222234443323334556666666  34556555443

>PRK12937 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.016  Score=52.83  Aligned_cols=115  Identities=14%  Similarity=0.110  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QP---QLENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~-----  111 (356)
                      ..+|.|+||+|.+|+.++..|+..|.  ++++++.+.   ......++....  ..+..+.. -+   +++++++     
T Consensus         5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (245)
T PRK12937          5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETA   80 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999987  788877654   122222333221  22222211 11   2223333     


Q ss_pred             --CCcEEEEcCCCCCCC------CCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Q 018433          112 --GMDLVIIPAGVPRKP------GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  162 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tN  162 (356)
                        ..|+||..+|.....      .+.-...+..|+.....+.+.+.+. .+.+.++++|.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence              689999999864211      1112334566766666666555443 24567777754

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.94  E-value=0.0084  Score=56.75  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~--~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..|||+|||+ |.+|.+++..|+..+  ...+|+.+|++. .....++....   .++.   +.+..+++++||+||++.
T Consensus         2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~-~~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav   73 (279)
T PRK07679          2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSN-ETRLQELHQKY---GVKG---THNKKELLTDANILFLAM   73 (279)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCC-HHHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEe
Confidence            4589999999 999999999998876  235889998754 11222332211   1222   235567789999999985

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.94  E-value=0.0056  Score=59.18  Aligned_cols=111  Identities=15%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHhCCCCcEEEEEeCCCc--h--------hH--HHH----HhcCC---------CCCeEEEEeCCCChhhhh
Q 018433           56 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------GV--TAD----ISHMD---------TGAVVRGFLGQPQLENAL  110 (356)
Q Consensus        56 vG~~~a~~l~~~~~~~el~L~D~~~~--~--------g~--~~d----l~~~~---------~~~~v~~~~~t~d~~~al  110 (356)
                      +|+.+|..++..|+  +|+|+|+++.  .        +.  ..+    +....         ...+++.. .+.|+++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVV-ARDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEee-cCcchHHHh
Confidence            47889999999998  9999999871  1        11  001    11100         01235442 123467889


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      ++||+||.+.              .++..+-+++...+.+.+ |++++  .||.......-++    .... .|+|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la----~~~~-~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQ----RHVA-HPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHH----hhcC-CcccEEEE
Confidence            9999999984              567778888888899988 56644  7888776653332    2222 25678776


Q ss_pred             c
Q 018433          190 T  190 (356)
Q Consensus       190 t  190 (356)
                      .
T Consensus       137 H  137 (314)
T PRK08269        137 H  137 (314)
T ss_pred             e
Confidence            4

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.045  Score=51.11  Aligned_cols=115  Identities=11%  Similarity=0.105  Sum_probs=63.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChhh---------hhCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLEN---------ALTG  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~~---------al~~  112 (356)
                      ..+.|+||+|.+|++++..|+..|.  .|++++++.  ......++.+......+..+. .-+|.++         .+..
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            4689999999999999999998887  899998865  222222222211111222221 1123211         1235


Q ss_pred             CcEEEEcCCCCCC--CC-Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433          113 MDLVIIPAGVPRK--PG-MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  162 (356)
Q Consensus       113 aDiVIi~ag~~~~--~g-~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  162 (356)
                      .|+||.++|....  .. .+   -.+.+..|......+.+.    +++.. .+.++++|.
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~vsS  140 (280)
T PRK06914         82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK-SGKIINISS  140 (280)
T ss_pred             eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence            7999999886431  11 11   123355666655555555    44433 344555543

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.032  Score=51.73  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh---hh-------
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA-------  109 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~a-------  109 (356)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+. .-++.+   ++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998887  999999875  223333333221  1222211 112321   11       


Q ss_pred             hCCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          110 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      +...|+||..+|.....   ..+   ....+..|......+.+...    +..+.+.++++|.-....            
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~------------  152 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL------------  152 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC------------
Confidence            23689999998853211   111   23345566655555555544    334556777776533221            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +.+..-.++.+......+.+.++..+.  + .+++..+
T Consensus       153 ~~~~~~~Y~~sK~a~~~~~~~~~~e~~--~-~i~v~~i  187 (263)
T PRK07814        153 AGRGFAAYGTAKAALAHYTRLAALDLC--P-RIRVNAI  187 (263)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHC--C-CceEEEE
Confidence            122333455543333345566666653  2 3544444

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.0063  Score=55.68  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  110 (356)
                      .++|.|+||+|++|.+++..|+..|.  +|++++++.   ......++....  ..+..+. .-+|   ...++      
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999998887  888888764   122223333211  1222111 1122   22222      


Q ss_pred             -CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          111 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                       .+.|+||..+|.......+....+..|......+++.+.++. .++.++++|.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence             368999998875322111222334566666666777776654 3456666654

>PRK07069 short chain dehydrogenase; Validated

Probab=96.91  E-value=0.052  Score=49.52  Aligned_cols=115  Identities=21%  Similarity=0.248  Sum_probs=66.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--chhHHHHHhcCCCCCeEEEEe-CCCC---hh-------hhhC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NALT  111 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~-~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~-------~al~  111 (356)
                      ||.|+||+|.+|.+++..|+..|.  +|++.|.+ .  +.....++........+..+. .-+|   +.       +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            589999999999999999998887  89999987 3  222333333221111111110 0122   11       1234


Q ss_pred             CCcEEEEcCCCCCCC---CCc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      ..|+||..+|.....   ..+   ....+..|+.    ..+.+.+.+++.. .+.|+++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss~  139 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISSV  139 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecCh
Confidence            689999999864321   111   2334556666    6677777776543 3456666543

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.039  Score=51.66  Aligned_cols=159  Identities=16%  Similarity=0.168  Sum_probs=88.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---------hhHHHHHhcCCCCCeEEEEe----CCCChhhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFL----GQPQLENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---------~g~~~dl~~~~~~~~v~~~~----~t~d~~~al  110 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++..         ...+.++....  ..+..+.    ...+.++.+
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~   81 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAV   81 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHH
Confidence            35899999999999999999998887  8999998641         11222232211  1111111    111222223


Q ss_pred             C-------CCcEEEEcCCCCCC-C--CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHH
Q 018433          111 T-------GMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEV  174 (356)
Q Consensus       111 ~-------~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~  174 (356)
                      +       ..|++|.++|.... +  ..+.   ...+..|+.....+.+.+..+   ...+.++++|.+....       
T Consensus        82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-------  154 (273)
T PRK08278         82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD-------  154 (273)
T ss_pred             HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc-------
Confidence            2       67999999986321 1  1222   223455665555555555432   2356777776543211       


Q ss_pred             HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                         ...++..-.++.+.....++-+.++..++  +..|++..+.
T Consensus       155 ---~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~  193 (273)
T PRK08278        155 ---PKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALW  193 (273)
T ss_pred             ---ccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence               01123344566665455567777777775  4456555443

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.019  Score=53.64  Aligned_cols=113  Identities=12%  Similarity=-0.001  Sum_probs=65.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------hCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------LTGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l~~a  113 (356)
                      ++|.|+||+|++|+.++..|+..+.  .+++++.+..  ...++.... ...+..+.. -+|.   .++       +...
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999998887  8888887641  111121110 112222111 1222   122       2457


Q ss_pred             cEEEEcCCCCCCCC-C--c---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          114 DLVIIPAGVPRKPG-M--T---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       114 DiVIi~ag~~~~~g-~--~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      |+||.++|...... .  +   -...+..|......+.+.+..+   ...+.++++|.
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS  135 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS  135 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence            99999998653211 1  1   2234567777777777776332   23345666654

>PRK06924 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.009  Score=54.78  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ++|.|+||+|.+|+.++..|+..|.  +|++++++.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999887  899999865

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.032  Score=51.99  Aligned_cols=159  Identities=18%  Similarity=0.128  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|+.++..|+..|.  +|++++.+.  ......++........+..+.. -+|   ..+.++      
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999887  899999875  2223333332211112222111 122   222233      


Q ss_pred             -CCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 -GMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                       ..|++|..+|.....+    .+   -...+..|......+.+.+.+.   ...+.++++|.....            .+
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~------------~~  152 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAAS------------NT  152 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhc------------CC
Confidence             6799999988532111    12   1233455666666665544433   234667766543211            11


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .|..-.++.+......+-+.+++.++  +..+++.++.
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~i~  188 (276)
T PRK05875        153 HRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVNSIR  188 (276)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            22222344443333445556666654  4556655554

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.013  Score=54.49  Aligned_cols=153  Identities=14%  Similarity=0.111  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  110 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++..  .....++.     ..+..+. .-+|   .++++       
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF   78 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999887  9999998752  22222221     1111111 0112   22222       


Q ss_pred             CCCcEEEEcCCCCCCC--CCc---HHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          111 TGMDLVIIPAGVPRKP--GMT---RDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      ...|++|..+|.....  ..+   ....+..|+.....+.+.+...  .+.+.|++++.-....            +.+.
T Consensus        79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~~  146 (261)
T PRK08265         79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF------------AQTG  146 (261)
T ss_pred             CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc------------CCCC
Confidence            3579999998864221  122   2233445665444444443322  3456777765432211            1222


Q ss_pred             CCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       184 ~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .-.++.+......+-+.++..++  +..|++.++
T Consensus       147 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  178 (261)
T PRK08265        147 RWLYPASKAAIRQLTRSMAMDLA--PDGIRVNSV  178 (261)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhc--ccCEEEEEE
Confidence            22334433233345566666653  345554444

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.88  E-value=0.038  Score=50.56  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe--CC-CC----------
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL--GQ-PQ----------  105 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~--~t-~d----------  105 (356)
                      ..+.++|.|+|++|.+|.+++..|+..|.  +|+++|++.  ......++.+... ..+..+.  .+ .+          
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~   85 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADT   85 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHH
Confidence            44567999999999999999999998887  999999876  2333344443321 1111110  00 01          


Q ss_pred             hhhhhCCCcEEEEcCCCCCC--C--CCcH---HHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecCC
Q 018433          106 LENALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAK---CCPNATVNLISNP  163 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNP  163 (356)
                      +.+.+...|+||..+|....  +  ..+.   ...+..|......+.+.+..   ..+...|+++|.-
T Consensus        86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~  153 (247)
T PRK08945         86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSS  153 (247)
T ss_pred             HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccH
Confidence            12233568999999875321  1  2222   23455666654444444432   2345566666653

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=96.86  E-value=0.011  Score=55.99  Aligned_cols=165  Identities=16%  Similarity=0.142  Sum_probs=96.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HHHHHhcCCCCCeEEEEeC-CCChhhhhC--CCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLG-QPQLENALT--GMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~-t~d~~~al~--~aDiVIi  118 (356)
                      |+|.|+|+|||+||++...+..+....+|+.+|.-.--|   ...++.+......++.-.+ .......++  +.|+|+.
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            689999999999999998888776656889999865222   2234444321122322111 112233455  6899999


Q ss_pred             cCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHH
Q 018433          119 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVV  195 (356)
Q Consensus       119 ~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~  195 (356)
                      .|.-..-  .=..-..++..|+-....+.++++++...-.++-+ |--|.---..-...+-+.+.+.|+-.+.-+.-.+.
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD  160 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD  160 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHH
Confidence            7753210  01123577899999999999999999865334433 44332110000000123455777777766433333


Q ss_pred             HHHHHHHHHhCCCC
Q 018433          196 RANTFVAEVLGLDP  209 (356)
Q Consensus       196 R~~~~la~~l~v~~  209 (356)
                      -|-+...+.+|++.
T Consensus       161 ~lVray~~TYglp~  174 (340)
T COG1088         161 LLVRAYVRTYGLPA  174 (340)
T ss_pred             HHHHHHHHHcCCce
Confidence            45556667778764

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=96.86  E-value=0.0085  Score=56.78  Aligned_cols=110  Identities=17%  Similarity=0.110  Sum_probs=67.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hh-HHHHHhcCCCCCeEEEEeC----CCChhhhhC--CCcEEE
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG-VTADISHMDTGAVVRGFLG----QPQLENALT--GMDLVI  117 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g-~~~dl~~~~~~~~v~~~~~----t~d~~~al~--~aDiVI  117 (356)
                      ||.|+||+|++|+.++..|...+.  +++++|.... .. ....+.+.   ..+..+..    ..++.++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999998887  7888886431 11 11111111   01222111    122334443  689999


Q ss_pred             EcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          118 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .++|.....  .....+.+..|+.....+++.+.+.... .++++|
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~s  120 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSS  120 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEec
Confidence            999864321  1223455678899899999888876543 344443

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.86  E-value=0.0073  Score=59.39  Aligned_cols=68  Identities=22%  Similarity=0.260  Sum_probs=46.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .||+|||+ |.+|.+++..|...++  ++.++|.+........-....   ....  .++++.+++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~---~~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFG---VIDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCC---CCcc--cccCHHHHhcCCCEEEEeC
Confidence            37999999 9999999999998887  778888776221111111111   1111  1356778899999999985

>PRK09135 pteridine reductase; Provisional

Probab=96.86  E-value=0.029  Score=51.04  Aligned_cols=147  Identities=14%  Similarity=0.089  Sum_probs=80.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhhC------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT------  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al~------  111 (356)
                      ++|.|+||+|++|++++..|+..+.  +++++|...   ......++.+... ..+..+. .-+|.   ..+++      
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999998887  999999754   2222333333211 1111111 11222   22233      


Q ss_pred             -CCcEEEEcCCCCC--CCC----CcHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433          112 -GMDLVIIPAGVPR--KPG----MTRDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNSTVPIAAEVFKKAGTYD  182 (356)
Q Consensus       112 -~aDiVIi~ag~~~--~~g----~~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNPv~~~t~~~~~~~~~~~~~~  182 (356)
                       ..|+||.++|...  ...    .+..+.+..|+.....+.+.+.++-  ..+.++..+.    .        .....++
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~  151 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD----I--------HAERPLK  151 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC----h--------hhcCCCC
Confidence             5799999988532  111    1123456677776666666665432  1334443332    1        0112344


Q ss_pred             CCCEEEechhhHHHHHHHHHHHhC
Q 018433          183 PKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       183 ~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                      +...++.+......+-..+++.++
T Consensus       152 ~~~~Y~~sK~~~~~~~~~l~~~~~  175 (249)
T PRK09135        152 GYPVYCAAKAALEMLTRSLALELA  175 (249)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHC
Confidence            444556554444445555666653

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.86  E-value=0.0095  Score=57.98  Aligned_cols=91  Identities=15%  Similarity=0.185  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|||. |.+|..+|..|...|.  +|+.+|++...  ..+.        +.   ...++++++++||+|++..-.
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~--~~~~--------~~---~~~~l~ell~~aDiVil~lP~  208 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNK--DLDF--------LT---YKDSVKEAIKDADIISLHVPA  208 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhH--hhhh--------hh---ccCCHHHHHhcCCEEEEeCCC
Confidence            4579999999 9999999999987676  99999986511  0010        11   124678899999999997521


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      .           ..+...+.  ...+....|++++|+++-
T Consensus       209 t-----------~~t~~li~--~~~l~~mk~gavlIN~aR  235 (330)
T PRK12480        209 N-----------KESYHLFD--KAMFDHVKKGAILVNAAR  235 (330)
T ss_pred             c-----------HHHHHHHh--HHHHhcCCCCcEEEEcCC
Confidence            1           11222221  122333347889999873

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.012  Score=53.16  Aligned_cols=115  Identities=16%  Similarity=0.172  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEE--eCCCChhhhh-------CC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF--LGQPQLENAL-------TG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~--~~t~d~~~al-------~~  112 (356)
                      .++|.|+||+|.+|..++..|+..|.  +++++|++..  .....++....  ..+...  ....++++++       ..
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADA--LRIGGIDLVDPQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcC--ceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            45899999999999999999998887  8999998761  12222332221  111111  0011222222       36


Q ss_pred             CcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          113 MDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       113 aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      .|+||..+|.....   ..+.   .+.+..|......+.+.+.+.   .+...++++|.
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (239)
T PRK12828         83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA  141 (239)
T ss_pred             cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            89999988753211   1111   233455655555555554432   34456666654

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.85  E-value=0.02  Score=52.22  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .++|.|+||+|.+|+.++..|+..+.  +|+++|.+.  ......++....  ..+..+.. -+|   .++++       
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999887  899999876  222223333221  12222111 112   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      ...|+||..+|......   .+.   ...+..|+.....+.+.+...   .+...+++++.
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss  139 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIAS  139 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECc
Confidence            35899999987532111   122   233566776666665555432   23345666654

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.84  E-value=0.0061  Score=58.73  Aligned_cols=120  Identities=22%  Similarity=0.229  Sum_probs=72.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHH---HHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT---ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~---~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|+|+ |.+|+.++..|.+.+.  .+.++-+.+. ...-   +.+.+.......... .+++ .+.+..+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~-~~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVV-AATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCccccccc-cccC-hhhcCCCCEEEEEe
Confidence            79999999 9999999999999883  6666655431 1111   111111110111111 1223 46678999999985


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCE-EEechh
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL-LGVTML  192 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kv-iG~t~l  192 (356)
                      -..                -..+..+.+..+. |+.+|+..-|=.+..-     .+++.  +|.+++ .|+|..
T Consensus        76 Ka~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-----~l~~~--~~~~~il~G~~~~  126 (307)
T COG1893          76 KAY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-----ELRKI--LPKETVLGGVTTH  126 (307)
T ss_pred             ccc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-----HHHHh--CCcceEEEEEeee
Confidence            211                1456667777776 6778888888888663     23433  555544 556543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.84  E-value=0.01  Score=54.39  Aligned_cols=114  Identities=13%  Similarity=0.219  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  110 (356)
                      .++|.|+||+|.+|++++..|+..|.  +++++|++.  ......++....  ..+..+. .-+|   +.+++       
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998887  999999876  233333343211  1222211 1112   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      .+.|+||..+|......   .+   -.+.+..|...    ++.+.+.+++.. ...|+++|.
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss  140 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMAS  140 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence            36899999988542111   11   12234455554    555555555443 345555554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.83  E-value=0.0096  Score=58.96  Aligned_cols=53  Identities=19%  Similarity=0.354  Sum_probs=43.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .+||+|||+.|.+|..++..|...|+  +|.++|.+..                      ++.++++++||+||++.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence            47999999559999999999999887  8999997420                      13457789999999985

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.83  E-value=0.032  Score=50.78  Aligned_cols=117  Identities=18%  Similarity=0.246  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .+++.|+|++|.+|.+++..|+..|.  +|++++++.  ......++...  ...+..+.. -+|   +.+++       
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998887  899999876  22222333321  123332211 112   22223       


Q ss_pred             CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  164 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv  164 (356)
                      .+.|+||.++|.....   +.+.   ...+..|......+.+.+..+   ...+.+++++...
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~  145 (239)
T PRK07666         83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA  145 (239)
T ss_pred             CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence            3789999998864321   1111   233456665444455444432   2234556565543

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.82  E-value=0.009  Score=54.33  Aligned_cols=114  Identities=21%  Similarity=0.332  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhh-------hh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------AL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~-------al  110 (356)
                      .+++.|+||+|.+|+.++..|+..+.  .+++.+.+.  +.....++.     ..+..+. .-+|   +++       .+
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEADL   78 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998887  788888764  222222221     1111111 1112   111       13


Q ss_pred             CCCcEEEEcCCCCCCC---C---CcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 018433          111 TGMDLVIIPAGVPRKP---G---MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  164 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g---~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv  164 (356)
                      ...|+||..+|.....   .   .+-...+..|+.....+++.+.+.   .+.+.++++|...
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  141 (245)
T PRK12936         79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV  141 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence            4689999999864211   1   112334566666655555544322   2456777776543

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.026  Score=53.01  Aligned_cols=115  Identities=17%  Similarity=0.138  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .+.+.|+||+|.+|++++..|+..|.  +|++.|.+.  +.....++....  ..+..+.. -+|   ..+++       
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999887  899999876  222333343221  12222111 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  162 (356)
                      ...|++|..+|.....   ..+.   ...+..|......+.+.    +.+....+.|+++|.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3479999999864211   1222   23345665544444444    444433466776664

>PRK12827 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.042  Score=49.97  Aligned_cols=118  Identities=19%  Similarity=0.298  Sum_probs=68.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c----hhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh--
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T----PGVTADISHMDTGAVVRGFLG-QPQL---ENAL--  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~----~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al--  110 (356)
                      +.++|.|+||+|.+|+.++..|+..+.  ++++++...  .    .....++...  ...+..+.. -+|.   ++++  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence            346899999999999999999998887  889988643  1    1111222211  112222111 1222   2222  


Q ss_pred             -----CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecCCC
Q 018433          111 -----TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISNPV  164 (356)
Q Consensus       111 -----~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNPv  164 (356)
                           ...|+||..+|.....   ..+   -...+..|......+++.+.+    ......+++++...
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~  149 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVA  149 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCch
Confidence                 3689999999864311   111   123456777777777777661    22334566665443

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.096  Score=48.81  Aligned_cols=118  Identities=19%  Similarity=0.176  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCCh----------hhhhCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL----------ENALTG  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~----------~~al~~  112 (356)
                      +++.|+||+|.+|..++..|+..|.  ++++++++.  +.....++..............-+|.          .+.+..
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS   78 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            3799999999999999999998886  899999875  22233333322111111000001121          122346


Q ss_pred             CcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecCCC
Q 018433          113 MDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISNPV  164 (356)
Q Consensus       113 aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tNPv  164 (356)
                      .|+||..+|.....   ..+.   ...+..|......+.+.+.    +....+.|+++|...
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  140 (272)
T PRK07832         79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA  140 (272)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence            89999999864211   1121   2345566665555555543    323346777776554

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.019  Score=53.48  Aligned_cols=117  Identities=17%  Similarity=0.191  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  110 (356)
                      ..+|.|+||+|.+|+.++..|+..|.  +|+++|++.  ......++....  ..+..+. .-+|   ...++       
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34899999999999999999998887  899999875  222223333211  1111110 0112   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPV  164 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNPv  164 (356)
                      ...|++|..+|.....   ..+.   ...+..|......+.+.+...  .+++.|+++|.+.
T Consensus        85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence            3569999988753211   1122   233456666555555554432  1356777777654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.78  E-value=0.0046  Score=52.16  Aligned_cols=76  Identities=20%  Similarity=0.308  Sum_probs=53.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      ..+..++.|+|| |.+|..++..|...+. .+|.+++++.  ++..+..+    ....+.... .+++.+.+.++|+||.
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-~~~~~~~~~~~DivI~   81 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEF----GGVNIEAIP-LEDLEEALQEADIVIN   81 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHH----TGCSEEEEE-GGGHCHHHHTESEEEE
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHc----Cccccceee-HHHHHHHHhhCCeEEE
Confidence            345679999999 9999999999998865 4799999875  23333333    122344432 3567778999999999


Q ss_pred             cCCCC
Q 018433          119 PAGVP  123 (356)
Q Consensus       119 ~ag~~  123 (356)
                      +.+.+
T Consensus        82 aT~~~   86 (135)
T PF01488_consen   82 ATPSG   86 (135)
T ss_dssp             -SSTT
T ss_pred             ecCCC
Confidence            86654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.78  E-value=0.003  Score=53.71  Aligned_cols=118  Identities=19%  Similarity=0.184  Sum_probs=71.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHh-----cCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-----HMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~-----~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |+|+|+ |.+|..+|..|.+.+.  ++.|++... ......-.     +......+.......+..+....+|+||++.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789999 9999999999999888  999999865 22211111     11100112211111222246799999999852


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-ch
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM  191 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~  191 (356)
                      ..    +            ..+..+.++.+. |+..|+.+-|=++..-     .+.+.  +|+.++++- +.
T Consensus        77 a~----~------------~~~~l~~l~~~~~~~t~iv~~qNG~g~~~-----~l~~~--~~~~~v~~g~~~  125 (151)
T PF02558_consen   77 AY----Q------------LEQALQSLKPYLDPNTTIVSLQNGMGNEE-----VLAEY--FPRPRVLGGVTT  125 (151)
T ss_dssp             GG----G------------HHHHHHHHCTGEETTEEEEEESSSSSHHH-----HHHCH--STGSGEEEEEEE
T ss_pred             cc----c------------hHHHHHHHhhccCCCcEEEEEeCCCCcHH-----HHHHH--cCCCcEEEEEEe
Confidence            11    1            345666677766 6778888888887653     23333  566788665 54

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.03  Score=52.47  Aligned_cols=114  Identities=13%  Similarity=0.089  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~  112 (356)
                      .++|.|+||+|.+|++++..|+..|.  +|++++++....  .++.... ...+..+. .-+|   ..+++       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999998887  899999875211  1222211 11111111 1122   12222       25


Q ss_pred             CcEEEEcCCCCCC---CCCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          113 MDLVIIPAGVPRK---PGMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       113 aDiVIi~ag~~~~---~g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      .|+||.++|....   ...+.   ...+..|+.....+.+.+..+   ...+.+|++|.
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS  137 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS  137 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence            8999999986421   11222   234667777666666664432   22346666664

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.053  Score=50.01  Aligned_cols=157  Identities=18%  Similarity=0.165  Sum_probs=82.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  110 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.  ......++........+..+. .-+|   ..+++       
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999887  899999876  333333443311112222211 1122   22222       


Q ss_pred             CCCcEEEEcCCCCCC-C-C-Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 TGMDLVIIPAGVPRK-P-G-MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-~-g-~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ...|++|..+|.... + . .+   -...+..|......+.+.    +.+. ..+.|+++|......            +
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------~  151 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIASTHAFK------------I  151 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECChhhcc------------C
Confidence            368999999986421 1 1 11   223344555544444444    4332 346677765432211            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .+..-.++.+......+-+.+++.+.  +..|++..+
T Consensus       152 ~~~~~~Y~~sKaa~~~~~~~la~el~--~~gIrvn~v  186 (260)
T PRK07063        152 IPGCFPYPVAKHGLLGLTRALGIEYA--ARNVRVNAI  186 (260)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            22222234433333345566666663  445554444

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.76  E-value=0.0085  Score=56.69  Aligned_cols=67  Identities=13%  Similarity=0.184  Sum_probs=46.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +||+|||+ |++|++++..|+..+.  ..+|+.+|++..  ....+.+.. .  +..   .++..+.+++||+||++.
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~--~~~~l~~~~-g--~~~---~~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVS--NLKNASDKY-G--ITI---TTNNNEVANSADILILSI   71 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHH--HHHHHHHhc-C--cEE---eCCcHHHHhhCCEEEEEe
Confidence            58999999 9999999999998774  457999998651  122222211 1  222   134457789999999985

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.026  Score=53.68  Aligned_cols=99  Identities=18%  Similarity=0.206  Sum_probs=58.5

Q ss_pred             ccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC
Q 018433           17 HLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG   94 (356)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~   94 (356)
                      .+-||--.|    +++.+..+...-...++|.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++....  
T Consensus        17 ~~~~~~~~~----~~~~~~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~--   88 (293)
T PRK05866         17 GMRPPISPQ----LLINRPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG--   88 (293)
T ss_pred             ccCCCCCch----hhcCCCCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--
Confidence            345665444    3443333333223346899999999999999999998887  999999876  233333332211  


Q ss_pred             CeEEEEeC-CCC---hhhhh-------CCCcEEEEcCCCC
Q 018433           95 AVVRGFLG-QPQ---LENAL-------TGMDLVIIPAGVP  123 (356)
Q Consensus        95 ~~v~~~~~-t~d---~~~al-------~~aDiVIi~ag~~  123 (356)
                      ..+..+.. -+|   ..+++       ...|++|..+|..
T Consensus        89 ~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~~  128 (293)
T PRK05866         89 GDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRS  128 (293)
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            11211111 112   22233       3789999998864

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.73  E-value=0.06  Score=49.82  Aligned_cols=156  Identities=15%  Similarity=0.115  Sum_probs=96.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCC-------CChhhhhCCCc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQ-------PQLENALTGMD  114 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t-------~d~~~al~~aD  114 (356)
                      +-+.|+||++-+|..+|..|+..|.  .++|..++.  ++..+.++.+....+ .+... ..       ....+.+...|
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVt-D~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVT-DRAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccC-CHHHHHHHHHHHHHhhCccc
Confidence            4588999999999999999999999  999999987  666676676411111 11110 00       11334567899


Q ss_pred             EEEEcCCCCCCCC------CcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433          115 LVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       115 iVIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k  185 (356)
                      ++|..||..+...      .+...++..|++.+......+--.   ...+.|||++.=....            .||...
T Consensus        84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~------------~y~~~~  151 (246)
T COG4221          84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY------------PYPGGA  151 (246)
T ss_pred             EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc------------cCCCCc
Confidence            9999999754321      134567788887776666555422   2366888887655433            266778


Q ss_pred             EEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          186 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       186 viG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ++|-|.-...-|..-|-+.+  ..+.|++..|
T Consensus       152 vY~ATK~aV~~fs~~LR~e~--~g~~IRVt~I  181 (246)
T COG4221         152 VYGATKAAVRAFSLGLRQEL--AGTGIRVTVI  181 (246)
T ss_pred             cchhhHHHHHHHHHHHHHHh--cCCCeeEEEe
Confidence            88766433322222222222  2355665554

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.72  E-value=0.055  Score=49.42  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  110 (356)
                      .+++.|+||+|.+|+.++..|+..|.  ++++++.+.  ......++. .  ...+..+. .-+|   .++++       
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~   79 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVAARW   79 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998886  899999875  222222232 1  12222221 1122   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tN  162 (356)
                      .+.|+||..+|.....   ..+.   ...+..|......+.+    .+++. ....|+++|.
T Consensus        80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS  140 (252)
T PRK06138         80 GRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQ-GGGSIVNTAS  140 (252)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-CCeEEEEECC
Confidence            3789999998864211   1111   2234556555444444    33333 3345665554

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.70  E-value=0.0079  Score=57.60  Aligned_cols=64  Identities=16%  Similarity=0.277  Sum_probs=44.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a  120 (356)
                      |||+|||. |.+|+.++..|...+.  +|+.+|+++..  +..+.+..    ...   ..++++.+++   +|+||++.
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence            58999999 9999999999998887  89999987521  12222211    121   2355666655   68998874

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.70  E-value=0.013  Score=55.40  Aligned_cols=66  Identities=23%  Similarity=0.343  Sum_probs=44.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||. |.+|..++..|...++..+|+.+|+++..  ...+.+...   ...   ..++.+ +.+||+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~-~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEE-LKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence            58999999 99999999999988865588999987511  111222111   111   124445 45699999985

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=96.70  E-value=0.025  Score=51.10  Aligned_cols=114  Identities=17%  Similarity=0.247  Sum_probs=67.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG  112 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~  112 (356)
                      |.|+|++|.+|+.++..|+.+|.  ++++++.+.   ......++.+..  ..+.... .-+|   +++++       ..
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46999999999999999999887  899998764   222333343322  1122111 1122   22233       34


Q ss_pred             CcEEEEcCCCCCC-C--C---CcHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 018433          113 MDLVIIPAGVPRK-P--G---MTRDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNPV  164 (356)
Q Consensus       113 aDiVIi~ag~~~~-~--g---~~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNPv  164 (356)
                      .|+||..+|.... +  +   ......+..|......+.+.+.++.   ..+.++++|...
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  137 (239)
T TIGR01830        77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV  137 (239)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence            6999999886421 1  1   1123456778877777777766542   244666666543

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.70  E-value=0.009  Score=57.12  Aligned_cols=64  Identities=20%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +||+|||. |.+|..++..|+..+.  +|+++|++...  ..++....    ..   ..+++.+++++||+||++.
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~---~~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----AT---PAASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Cc---ccCCHHHHHhcCCEEEEec
Confidence            48999999 9999999999998887  89999987621  22222211    11   1245668899999999974

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.047  Score=49.74  Aligned_cols=115  Identities=14%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------  110 (356)
                      .++|.|+||+|.+|+.++..|+..|.  ++++++.++  ......++....  ..+..+. .-+|.   ++++       
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999998887  899998865  222333443221  1222221 11222   1122       


Q ss_pred             CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      .+.|+||..+|.....   ..+.   ...+..|......+.+.+..+   ...+.++++|.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence            4789999998864321   1121   233456666665665555433   23457776655

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.69  E-value=0.017  Score=53.07  Aligned_cols=118  Identities=14%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  110 (356)
                      +.++|.|+||+|.+|+.++..|+..|.  .|+++|++.  +.....++....  ..+..+. .-+|   +..++      
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999998887  899999976  233333443221  1122111 1122   22222      


Q ss_pred             -CCCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 018433          111 -TGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  164 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv  164 (356)
                       ...|+||..+|.... +  ..+   -...+..|......+.+.+.+.   ...+.++++|...
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~  149 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA  149 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence             245899999886321 1  111   2234566666555555444332   2346677776654

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.68  E-value=0.0096  Score=60.67  Aligned_cols=98  Identities=15%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC--CCeEEEEeCCCChhhhhC---CCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALT---GMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~---~aDiVIi~  119 (356)
                      .+|+|||. |.+|+++|..|+..|+  +|.++|++..  .+.++.....  ...+..   +.+++++++   ++|+||+.
T Consensus         2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~--~~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYE--KTEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence            48999999 9999999999999998  9999999762  1122222100  112222   356767665   58988886


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN  165 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~  165 (356)
                      .-.               ...+.++.+.+..+ .|+.+||..+|-..
T Consensus        74 v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~~~  105 (470)
T PTZ00142         74 IKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNEWY  105 (470)
T ss_pred             eCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence            321               12233343444443 36778888876443

>PRK06701 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.03  Score=53.14  Aligned_cols=117  Identities=15%  Similarity=0.159  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-----
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-----  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-----  110 (356)
                      +.++|.|+||+|.+|++++..|+..|.  ++++++.+.   .......+...  ...+..+.. -+|   +.+.+     
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~  120 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVR  120 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998887  899999875   12222223221  122222111 112   22222     


Q ss_pred             --CCCcEEEEcCCCCCC--C--CCc---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 018433          111 --TGMDLVIIPAGVPRK--P--GMT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP  163 (356)
Q Consensus       111 --~~aDiVIi~ag~~~~--~--g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNP  163 (356)
                        ...|+||..+|....  +  ..+   -...+..|+.....+.+.+.++ .+.+.+|++|.-
T Consensus       121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~  183 (290)
T PRK06701        121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI  183 (290)
T ss_pred             HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence              357999999886321  1  111   2345677887777877777654 345667776653

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.68  E-value=0.019  Score=56.43  Aligned_cols=112  Identities=20%  Similarity=0.226  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc------hhH------HHH--HhcCCCCCeEEEEeCCCChhhhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV------TAD--ISHMDTGAVVRGFLGQPQLENAL  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~------~g~------~~d--l~~~~~~~~v~~~~~t~d~~~al  110 (356)
                      ++|+|||- |+||..+|-.++..|.  .++-+|+|+.      .|.      ..|  +.......+++.   |+|. +.+
T Consensus        10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~l   82 (436)
T COG0677          10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EEL   82 (436)
T ss_pred             eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hhc
Confidence            79999999 9999999999999998  9999999871      111      011  111111234553   5676 557


Q ss_pred             CCCcEEEEcCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHHhCCCc-EE-EEecCCCCccHHH
Q 018433          111 TGMDLVIIPAGVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNA-TV-NLISNPVNSTVPI  170 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a-~v-iv~tNPv~~~t~~  170 (356)
                      +.||++|++.-.|.+.. +.-+.+       +.+-++.|.++=.++ .| +=.|-|.+..-.+
T Consensus        83 ~~~dv~iI~VPTPl~~~~~pDls~-------v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v  138 (436)
T COG0677          83 KECDVFIICVPTPLKKYREPDLSY-------VESAARSIAPVLKKGDLVILESTTPPGTTEEV  138 (436)
T ss_pred             ccCCEEEEEecCCcCCCCCCChHH-------HHHHHHHHHHhcCCCCEEEEecCCCCCcHHHH
Confidence            89999999876665432 222232       334445555544333 33 2236777665444

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.67  E-value=0.011  Score=56.19  Aligned_cols=65  Identities=18%  Similarity=0.249  Sum_probs=48.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +||++||- |.+|+..|..|...|+  +++.+|++..+. +..+.....    ..   ..++.++.++||+||..-
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga----~~---a~s~~eaa~~aDvVitmv   65 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA----TV---AASPAEAAAEADVVITML   65 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC----cc---cCCHHHHHHhCCEEEEec
Confidence            58999999 9999999999999998  999999976332 222333211    11   134468999999999974

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.67  E-value=0.026  Score=53.47  Aligned_cols=99  Identities=18%  Similarity=0.150  Sum_probs=62.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      +||+|||+ |.+|.+++..|...+.  ..+|+++|.+... ....+...  ...+..   ++|..++++++|+||++.- 
T Consensus         2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~--~~~~~~---~~~~~e~~~~aDvVilavp-   73 (277)
T PRK06928          2 EKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK--YPTVEL---ADNEAEIFTKCDHSFICVP-   73 (277)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH--cCCeEE---eCCHHHHHhhCCEEEEecC-
Confidence            68999999 9999999999988762  2589999986411 11222221  112222   2455677899999998852 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  166 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~  166 (356)
                      |               ..+.++++.+..+- ++..||.+.|-++.
T Consensus        74 p---------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~~  103 (277)
T PRK06928         74 P---------------LAVLPLLKDCAPVLTPDRHVVSIAAGVSL  103 (277)
T ss_pred             H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence            1               12445556665544 45566666666553

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.66  E-value=0.1  Score=47.55  Aligned_cols=116  Identities=17%  Similarity=0.223  Sum_probs=66.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCCh---h-------hhhC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---E-------NALT  111 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~---~-------~al~  111 (356)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++++.+........+....  ..+..+. .-+|.   .       +.+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999887  899999865322222232221  1122111 11221   1       1224


Q ss_pred             CCcEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tN  162 (356)
                      ..|++|..+|......   .   .-.+.+..|......+.+.+.+    ....+.+++++.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            6899999988642111   1   1223456676655555555443    222466666654

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.66  E-value=0.099  Score=47.90  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ++|.|+||+|.+|++++..|+..|.  +++++|.+.
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            4689999999999999999999887  899999754

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.65  E-value=0.011  Score=54.60  Aligned_cols=110  Identities=16%  Similarity=0.106  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC--C---CChhhhh-CCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q---PQLENAL-TGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t---~d~~~al-~~aDiV  116 (356)
                      +++||.|+||+|++|+.++..|+..+.  +|+.+.++...... .+...   ..+..+.+  +   .++.+++ .++|+|
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~-~~~~~---~~~~~~~~Dl~d~~~~l~~~~~~~~d~v   89 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKT-SLPQD---PSLQIVRADVTEGSDKLVEAIGDDSDAV   89 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHH-hcccC---CceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence            457999999999999999999998887  78777665411111 11111   11211110  1   2344556 689999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |..+|.....+.  ...+..|......+.+.+.+.... .|+.+|
T Consensus        90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iS  131 (251)
T PLN00141         90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILVS  131 (251)
T ss_pred             EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEEc
Confidence            998875422121  111233444456667777655433 444443

>PRK08589 short chain dehydrogenase; Validated

Probab=96.64  E-value=0.047  Score=51.03  Aligned_cols=115  Identities=16%  Similarity=0.210  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------hC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l~  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|+++ +.....++.+..  ..+..+. .-+|   ..++       +.
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999887  899999874 233333443321  1111111 0112   1122       23


Q ss_pred             CCcEEEEcCCCCCCCC----CcH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 018433          112 GMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g----~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      ..|++|..+|.....+    .+.   ...+..|+..    .+.+.+.+.+.  .+.|++++...
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~~  143 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSFS  143 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCchh
Confidence            5799999998643211    111   2233445443    34444444432  36777776543

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.032  Score=51.49  Aligned_cols=35  Identities=37%  Similarity=0.350  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +++|.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~   36 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT   36 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999887  899999875

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.066  Score=49.14  Aligned_cols=117  Identities=15%  Similarity=0.143  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hh-------
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------  108 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~-------  108 (356)
                      .+.++|.|+||+|.+|++++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|.   +.       
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   78 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALE   78 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999887  999999876  222233333211  1111111 11221   11       


Q ss_pred             hhCCCcEEEEcCCCCCC--C--CCcH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 018433          109 ALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  162 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  162 (356)
                      .+...|+||..+|....  +  ..+.   ...+..|+.....+.+.+..+-  ....||++|.
T Consensus        79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            12468999999986321  1  1222   2345566665666666655432  1246666654

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.63  E-value=0.018  Score=51.12  Aligned_cols=104  Identities=17%  Similarity=0.162  Sum_probs=60.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||+||||+|.+|+.++.....+|+  |++-+=++..+-.+.  ... .-..-.++ ..+.+.+++.+-|+||.+-|.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~-~i~q~Dif-d~~~~a~~l~g~DaVIsA~~~~~   74 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGV-TILQKDIF-DLTSLASDLAGHDAVISAFGAGA   74 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--ccc-eeeccccc-ChhhhHhhhcCCceEEEeccCCC
Confidence            7999999999999999999999999  888887776111110  000 00011111 11233578999999999876542


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                       ++..     ..-.+....+...++. +-...++++.
T Consensus        75 -~~~~-----~~~~k~~~~li~~l~~-agv~RllVVG  104 (211)
T COG2910          75 -SDND-----ELHSKSIEALIEALKG-AGVPRLLVVG  104 (211)
T ss_pred             -CChh-----HHHHHHHHHHHHHHhh-cCCeeEEEEc
Confidence             2211     1112223444444443 2355667664

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.62  E-value=0.038  Score=50.97  Aligned_cols=156  Identities=17%  Similarity=0.195  Sum_probs=83.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~  112 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|++++.+........+....  .++..+. .-+|   .++++       ..
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            34789999999999999999999888  899998754222222222211  1222111 1122   22222       35


Q ss_pred             CcEEEEcCCCCCCC---CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433          113 MDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  182 (356)
Q Consensus       113 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~  182 (356)
                      .|++|..+|.....   ..+   ....+..|+..    .+.+.+.+.+....+.||+++......            +.+
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~  151 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ------------GGI  151 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC------------CCC
Confidence            79999999864321   111   22334555544    444444454433346777776543221            112


Q ss_pred             CCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          183 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       183 ~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ..-.++.+......+-+.+|..+.  +..|++..+
T Consensus       152 ~~~~Y~asK~a~~~l~~~la~e~~--~~girvn~v  184 (251)
T PRK12481        152 RVPSYTASKSAVMGLTRALATELS--QYNINVNAI  184 (251)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            222345544344456666677653  444544444

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.62  E-value=0.047  Score=50.33  Aligned_cols=116  Identities=14%  Similarity=0.124  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh---hh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~a-------l  110 (356)
                      .++|.|+||+|.+|++++..|+..|.  +|+++|.+.  ......++....  ..+..+. .-+|.+   ++       +
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999998887  899999865  222222232211  1221111 112321   11       2


Q ss_pred             CCCcEEEEcCCCCCCCC------CcHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP  163 (356)
                      ...|+||.++|......      ......+..|+.....+.+.+..+    .+.+.++++|..
T Consensus        88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~  150 (259)
T PRK08213         88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASV  150 (259)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence            46799999988532111      112345667887777777766554    244566666653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.62  E-value=0.0033  Score=57.83  Aligned_cols=70  Identities=26%  Similarity=0.316  Sum_probs=46.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCC---hhhh-hCCCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi~  119 (356)
                      |+|+|+|+ |.+|+++|..|...|.  +++++|.++ .....  +.+.....-+.+ . .+|   +++| +.++|.+|.+
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~--~~~~~~~~~v~g-d-~t~~~~L~~agi~~aD~vva~   73 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEF--LADELDTHVVIG-D-ATDEDVLEEAGIDDADAVVAA   73 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHH--hhhhcceEEEEe-c-CCCHHHHHhcCCCcCCEEEEe
Confidence            68999999 9999999999999998  999999987 21111  111110111222 1 123   2333 5888999998


Q ss_pred             CC
Q 018433          120 AG  121 (356)
Q Consensus       120 ag  121 (356)
                      .|
T Consensus        74 t~   75 (225)
T COG0569          74 TG   75 (225)
T ss_pred             eC
Confidence            64

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.05  Score=49.67  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE-eCCCChh---h-------hh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQLE---N-------AL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~-~~t~d~~---~-------al  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|+++  ......++.+..  ..+..+ ..-+|..   +       .+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF   81 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999887  899999875  222222232211  111111 1112321   1       12


Q ss_pred             CCCcEEEEcCCCCC----CC--CCcH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPR----KP--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~----~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  162 (356)
                      ...|+||.++|...    .+  ..+.   .+.+..|......+.+.+..+.   ..+.|+++|.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  145 (250)
T PRK07774         82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSS  145 (250)
T ss_pred             CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEec
Confidence            36899999998632    11  1121   2345567666666666655442   2356666653

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.62  E-value=0.031  Score=53.69  Aligned_cols=117  Identities=14%  Similarity=0.109  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHH----HhcCCCCCeEEEEeCCCChhhhhCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTAD----ISHMDTGAVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~d----l~~~~~~~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      .|||+|+|+ |.||+.++..|...|.  ++.|+++..  +.....+    +.+......+....  .+ .+.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~--~~-~~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA--ET-ADAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC--CC-cccccccCEEE
Confidence            479999999 9999999999998886  899999853  1111100    10000000111111  11 12356889999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      ++.-.            ..    ..+..+.+..+. ++..|+.+-|=++....     +++.  ++.+++++-
T Consensus        76 v~vK~------------~~----~~~al~~l~~~l~~~t~vv~lQNGv~~~e~-----l~~~--~~~~~v~~g  125 (305)
T PRK05708         76 LACKA------------YD----AEPAVASLAHRLAPGAELLLLQNGLGSQDA-----VAAR--VPHARCIFA  125 (305)
T ss_pred             EECCH------------Hh----HHHHHHHHHhhCCCCCEEEEEeCCCCCHHH-----HHHh--CCCCcEEEE
Confidence            98521            11    223444555443 78888888898887643     2333  566777765

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.034  Score=51.32  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------~  111 (356)
                      ++|.|+||+|.+|..++..|+..+.  +|+++|++.  ......++....  ..+..+.. -+|.   .+++       .
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998887  899999876  222233343322  12222211 1222   1222       3


Q ss_pred             CCcEEEEcCCCCCCCC---C-cH---HHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCC
Q 018433          112 GMDLVIIPAGVPRKPG---M-TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPV  164 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~-~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNPv  164 (356)
                      +.|+||.++|......   . +.   ...+..|......+.+.+..+.  ..+.++++|...
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~  139 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLA  139 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence            6799999988543211   1 11   2335666666666666654332  235666665543

>PRK05855 short chain dehydrogenase; Validated

Probab=96.61  E-value=0.06  Score=55.42  Aligned_cols=121  Identities=17%  Similarity=0.192  Sum_probs=70.8

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCChh---hhh---
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---NAL---  110 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~~---~al---  110 (356)
                      ...+.+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +...+.++....  ..+..+.. -+|.+   +.+   
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~  386 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWV  386 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHH
Confidence            344567899999999999999999999888  899999876  233333343221  12222111 12221   112   


Q ss_pred             ----CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 018433          111 ----TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       111 ----~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                          ...|++|..+|.....   ..+.   ...+..|....    +...+.+.+....+.|+++|.-.
T Consensus       387 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~  454 (582)
T PRK05855        387 RAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAA  454 (582)
T ss_pred             HHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence                3479999999875321   1121   23344565444    44445555555557777776543

>PLN02256 arogenate dehydrogenase

Probab=96.60  E-value=0.023  Score=54.70  Aligned_cols=65  Identities=20%  Similarity=0.238  Sum_probs=45.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh-CCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi~a  120 (356)
                      +.+||+|||+ |.+|..++..|...+.  +|+.+|.+.....+.++     .  +..   .++.++.+ .++|+||++.
T Consensus        35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~-----g--v~~---~~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL-----G--VSF---FRDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc-----C--Cee---eCCHHHHhhCCCCEEEEec
Confidence            5579999998 9999999999987775  89999987522122211     1  111   13555555 4799999985

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.027  Score=51.40  Aligned_cols=112  Identities=20%  Similarity=0.163  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al  110 (356)
                      .++|.|+||+|.+|+.++..|+..|.  ++++++++.  ......++   .  ..+..+. ..+|.          .+.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAEL---G--ESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999887  899999875  11111111   1  1121111 11222          1123


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                      ...|+||..+|......   .+   -...+..|+.....+.+.+..+- ..+.+++++.
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S  137 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGS  137 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            46899999988643211   11   22346677777777777776532 2344555443

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.60  E-value=0.027  Score=51.30  Aligned_cols=114  Identities=18%  Similarity=0.269  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++++++.  ......++....  ..+..+.. -+|   +++.+       
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDF   81 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999998887  899999875  222223333221  22332211 112   22222       


Q ss_pred             CCCcEEEEcCCCCCC-C--CCcH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN  162 (356)
                      ...|+||..+|.... +  ..+.   ...+..|+.....+.+.+    .+.. ...++++|.
T Consensus        82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss  142 (251)
T PRK12826         82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS  142 (251)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence            368999999875421 1  1222   234556666555555554    3333 345555543

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.59  E-value=0.038  Score=51.01  Aligned_cols=116  Identities=18%  Similarity=0.202  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-------  111 (356)
                      .++|.|+||+|.+|..++..|+..|.  .+++++.+. .......+.+..  ..+..+. ..+|   .++.++       
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g   90 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG   90 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999998887  889998864 222222222211  1222211 1122   222233       


Q ss_pred             CCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP  163 (356)
                      ..|++|.++|.... +  ..+   ....+..|+.....+.+.+..+.   ..+.++++|..
T Consensus        91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~  151 (258)
T PRK06935         91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASM  151 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence            67999999886421 1  111   22345556655544554444322   24566666654

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.58  E-value=0.052  Score=50.39  Aligned_cols=112  Identities=15%  Similarity=0.130  Sum_probs=62.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC-------CCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-------GMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-------~aDiVI  117 (356)
                      .+|.|+||+|.+|++++..|+..|.  +|++.+++......  ..+.. ...... ....+++++++       ..|+||
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~~-~~~~D~-~d~~~~~~~~~~~~~~~g~~d~li   78 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGVE-LLELDV-TDDASVQAAVDEVIARAGRIDVLV   78 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCCe-eEEeec-CCHHHHHHHHHHHHHhCCCCCEEE
Confidence            4799999999999999999998887  89999987511100  01100 001111 01122333343       469999


Q ss_pred             EcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 018433          118 IPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNP  163 (356)
Q Consensus       118 i~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  163 (356)
                      .++|......   .+   -...+..|......+.+.    +++.. .+.|+++|..
T Consensus        79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS~  133 (270)
T PRK06179         79 NNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISSV  133 (270)
T ss_pred             ECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECCc
Confidence            9998643211   11   234455565444444444    44333 4566666653

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.57  E-value=0.035  Score=51.04  Aligned_cols=141  Identities=11%  Similarity=0.097  Sum_probs=78.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhh-------CC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENAL-------TG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al-------~~  112 (356)
                      .+++.|+||+|.+|..++..|+..+.  +|+++|++...    ...    ...+..+..    ..+.++++       ..
T Consensus         6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   75 (252)
T PRK07856          6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVD----GRPAEFHAADVRDPDQVAALVDAIVERHGR   75 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhc----CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999998887  89999987521    011    011111110    11222333       34


Q ss_pred             CcEEEEcCCCCC-CCC--C---cHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433          113 MDLVIIPAGVPR-KPG--M---TRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVNSTVPIAAEVFKKAGTYD  182 (356)
Q Consensus       113 aDiVIi~ag~~~-~~g--~---~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~  182 (356)
                      .|+||..+|... .+.  .   .....+..|+.....+.+.+..+    ...+.+|++|.-....            +.|
T Consensus        76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~  143 (252)
T PRK07856         76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR------------PSP  143 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC------------CCC
Confidence            599999988532 111  1   12344566666666666555432    2346677766533211            222


Q ss_pred             CCCEEEechhhHHHHHHHHHHHhC
Q 018433          183 PKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       183 ~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                      ..-.++.+......+-+.++..++
T Consensus       144 ~~~~Y~~sK~a~~~l~~~la~e~~  167 (252)
T PRK07856        144 GTAAYGAAKAGLLNLTRSLAVEWA  167 (252)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhc
Confidence            233344443333445566677664

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=96.57  E-value=0.013  Score=54.91  Aligned_cols=61  Identities=13%  Similarity=0.213  Sum_probs=43.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .|||+|||+ |.+|++++..|...+..  .+++.+|.+...     +       ....   ..|..++++++|+||++.
T Consensus         3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav   65 (260)
T PTZ00431          3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV   65 (260)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe
Confidence            479999999 99999999999887632  358888876411     0       0111   134457789999999983

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.57  E-value=0.02  Score=54.79  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=44.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a  120 (356)
                      |||+|||. |.+|+.++..|+..+.  +|+++|+++..  +.++.+..    +..   ..++.+..+.   +|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence            68999999 9999999999998887  89999997521  12222221    121   1344555554   69988874

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.56  E-value=0.018  Score=55.47  Aligned_cols=100  Identities=19%  Similarity=0.250  Sum_probs=65.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .+.++|+|+|+ |.+|..++..|...+ ..+|.++|++.  +...+..+.     ..+..   .+++.+++.++|+||.+
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~a  245 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISA  245 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEEC
Confidence            45689999999 999999998888754 24899999875  222332221     12211   13567888999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHh-CCCcEEEEecCCCCcc
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGI-AKC-CPNATVNLISNPVNST  167 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i-~~~-~p~a~viv~tNPv~~~  167 (356)
                      .+.+..                .++...+ ... ....+++-+++|-|+-
T Consensus       246 t~~~~~----------------~~~~~~~~~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         246 TGAPHY----------------AKIVERAMKKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             CCCCch----------------HHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence            876521                1212222 111 2356888899999865

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.022  Score=52.34  Aligned_cols=113  Identities=20%  Similarity=0.339  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------C
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~  111 (356)
                      .++|.|+||+|.+|++++..|+..|.  +|++.+++. ......++..    ..+..+. .-+|   .++.+       .
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   88 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAFG   88 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            35899999999999999999999887  899999875 2222222221    1111110 1112   22222       3


Q ss_pred             CCcEEEEcCCCCCC-CC--Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRK-PG--MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-~g--~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      ..|+||..+|.... +.  .+   -...+..|......+.+.+..+   ...+.++++|.
T Consensus        89 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  148 (255)
T PRK06841         89 RIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS  148 (255)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            67999999886421 11  11   1234566666666666665543   23456666654

>PLN02996 fatty acyl-CoA reductase

Probab=96.53  E-value=0.043  Score=56.32  Aligned_cols=111  Identities=17%  Similarity=0.115  Sum_probs=69.3

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC----ch-hHHHHHhcCC------------C----CCeE
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN----TP-GVTADISHMD------------T----GAVV   97 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~----~~-g~~~dl~~~~------------~----~~~v   97 (356)
                      +|-+.+.|.|+||+|++|++++..|+.. .-+.+|+++.+..    .. ....++.+..            .    ..++
T Consensus         7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv   86 (491)
T PLN02996          7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV   86 (491)
T ss_pred             HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence            3455678999999999999999987764 4455777777654    11 1111111100            0    0233


Q ss_pred             EEEeCC----------CC-hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 018433           98 RGFLGQ----------PQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC  151 (356)
Q Consensus        98 ~~~~~t----------~d-~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~  151 (356)
                      ..+.+.          .+ +++.++++|+||.+|+... ......+....|+....++.+...+.
T Consensus        87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~  150 (491)
T PLN02996         87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC  150 (491)
T ss_pred             EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            333221          11 3356689999999987543 22344556788999999999988764

>PRK06128 oxidoreductase; Provisional

Probab=96.51  E-value=0.07  Score=50.68  Aligned_cols=116  Identities=22%  Similarity=0.243  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a------  109 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.+.+.    .......+....  ..+..+. .-+|   .+++      
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998887  888877643    112222232221  1222111 1112   1122      


Q ss_pred             -hCCCcEEEEcCCCCC--CC--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 018433          110 -LTGMDLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  163 (356)
Q Consensus       110 -l~~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  163 (356)
                       +...|++|..+|...  .+  ..+   -...+..|+.....+++.+..+. +.+.||++|.-
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~  193 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSI  193 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCc
Confidence             346899999998642  21  112   33456788877777777776654 35677776543

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.51  E-value=0.026  Score=53.40  Aligned_cols=101  Identities=21%  Similarity=0.267  Sum_probs=71.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC-c-h------hHHHHHhcCCCCCeEEEEeCCCCh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN-T-P------GVTADISHMDTGAVVRGFLGQPQL  106 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~----~~~-----~el~L~D~~~-~-~------g~~~dl~~~~~~~~v~~~~~t~d~  106 (356)
                      ..||.|.|| |..|..++..|...    |+.     ..++++|.+- + .      ..-..+.+..  .. .   ...++
T Consensus        25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~--~~-~---~~~~L   97 (279)
T cd05312          25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD--EE-K---EGKSL   97 (279)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc--Cc-c---cCCCH
Confidence            469999999 99999999877653    552     6999999875 1 1      1111222211  11 1   13578


Q ss_pred             hhhhC--CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          107 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       107 ~~al~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      .++++  ++|++|=+.+.+   |-           +-+++.+.|.+++++.+|+-.|||..
T Consensus        98 ~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312          98 LEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             HHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            99999  999998876544   21           13588889999999999999999986

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>TIGR01746 Thioester-redct thioester reductase domain

Probab=96.49  E-value=0.036  Score=53.27  Aligned_cols=114  Identities=13%  Similarity=0.075  Sum_probs=69.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-----HHHhcC-----CCC-CeEEEEeCC----------C
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADISHM-----DTG-AVVRGFLGQ----------P  104 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~-----~dl~~~-----~~~-~~v~~~~~t----------~  104 (356)
                      +|.|+||+|++|++++..|+..+...+|+++.++.....+     ..+...     ... ..+....+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            5889999999999999999988754488888876521111     111110     000 233333211          1


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ++.+...++|+||.+++... ......++...|+.....+.+...+..... ++.+|
T Consensus        81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~-~v~iS  135 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP-LHYVS  135 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce-EEEEc
Confidence            23445688999999987532 122334556788888888888887765443 44443

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK07985 oxidoreductase; Provisional

Probab=96.49  E-value=0.18  Score=47.80  Aligned_cols=118  Identities=18%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCCCCeEEEEe-CCCCh----------
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL-GQPQL----------  106 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~-~t~d~----------  106 (356)
                      .+.+++.|+||+|.+|.+++..|+..|.  +|++.+.+.    .......+.+..  ..+..+. .-+|.          
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~  122 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEA  122 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHH
Confidence            3446899999999999999999999887  888887643    111111122211  1222111 11222          


Q ss_pred             hhhhCCCcEEEEcCCCCCC--C--CCcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 018433          107 ENALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  163 (356)
Q Consensus       107 ~~al~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  163 (356)
                      .+.+...|++|..+|....  +  ..+.   ...+..|+.....+.+.+..+- ..+.||++|..
T Consensus       123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~  187 (294)
T PRK07985        123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSI  187 (294)
T ss_pred             HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence            1223467999999885321  1  1222   3345677766666666655432 34677777654

>PRK09242 tropinone reductase; Provisional

Probab=96.47  E-value=0.12  Score=47.56  Aligned_cols=118  Identities=16%  Similarity=0.125  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---h-------hhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---L-------ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~al  110 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|++++++.  ......++.......++..+.. -+|   .       .+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34899999999999999999999887  899999876  3333334433211122222111 011   1       1224


Q ss_pred             CCCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNP  163 (356)
                      ...|+||..+|.... +  ..+   -...+..|+.....+.+.+..   ..+.+.++++|.-
T Consensus        87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~  148 (257)
T PRK09242         87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSV  148 (257)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECcc
Confidence            567999999986321 1  111   223345565544444444432   1234566666543

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.11  Score=47.50  Aligned_cols=115  Identities=22%  Similarity=0.223  Sum_probs=64.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh----------hhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~----------~al~  111 (356)
                      +++.|+||+|.+|.+++..|+..+.  ++++.+++.  ......++........+.... .-+|.+          +.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998886  899999876  222233333221112222221 112221          2234


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tN  162 (356)
                      ..|+||..+|......   .+   -...+..|......+.+.+.    +.. ...++++|.
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS  140 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG-SGHLVLISS  140 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEec
Confidence            6899999998643221   11   12334566655555554443    333 345555553

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.12  Score=47.42  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al~-----  111 (356)
                      .++|.|+||+|.+|++++..|+..|.  ++++.+ ++.  ......++....  ..+..+. .-+|.   .++++     
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~   81 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE   81 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence            35899999999999999999998886  776654 433  122222232111  1122111 11222   22222     


Q ss_pred             --------CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          112 --------GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       112 --------~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                              +.|+||.++|......   .+   -...+..|+.....+.+.+.++. ..+.++++|.
T Consensus        82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS  147 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS  147 (254)
T ss_pred             hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                    5899999998642211   11   13345577777767777666543 2345666554

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.46  E-value=0.011  Score=55.28  Aligned_cols=107  Identities=21%  Similarity=0.277  Sum_probs=72.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC--chh------HHHHHhcCCCCCeEEEEeCCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPG------VTADISHMDTGAVVRGFLGQPQ  105 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~----~~~-----~el~L~D~~~--~~g------~~~dl~~~~~~~~v~~~~~t~d  105 (356)
                      +..||.+.|| |..|-.++..|...    |+-     ..++|+|.+-  ..+      .-..+.+...  ....   ..+
T Consensus        24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~--~~~~---~~~   97 (255)
T PF03949_consen   24 SDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTN--PEKD---WGS   97 (255)
T ss_dssp             GG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSS--TTT-----SS
T ss_pred             HHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCc--cccc---ccC
Confidence            4569999999 99999999877654    764     7899999875  111      1222322211  1110   147


Q ss_pred             hhhhhCCC--cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHH
Q 018433          106 LENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVP  169 (356)
Q Consensus       106 ~~~al~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~--~~t~  169 (356)
                      +.++++++  |++|=+.+.+   |.           +-+++.+.|.+++++.+|+-.|||..  -.++
T Consensus        98 L~eav~~~kPtvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p  151 (255)
T PF03949_consen   98 LLEAVKGAKPTVLIGLSGQG---GA-----------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTP  151 (255)
T ss_dssp             HHHHHHCH--SEEEECSSST---TS-----------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred             HHHHHHhcCCCEEEEecCCC---Cc-----------CCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence            89999999  9999887654   21           24688999999999999999999997  6654

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=96.46  E-value=0.0033  Score=59.80  Aligned_cols=98  Identities=23%  Similarity=0.271  Sum_probs=59.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||.|+||+|++|+++...|...++  +++.++...     .|+.+..   .+      .++-+. ...|+||.+|+...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~------~~~~~~-~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AV------AKLLEA-FKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HH------HHHHHH-H--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HH------HHHHHH-hCCCeEeccceeec
Confidence            8999999999999999999988776  888887653     2222211   00      011122 25899999987642


Q ss_pred             CC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          125 KP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       125 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ..  ..........|......+++...+.  ++.+|.+|
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S  100 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS  100 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence            11  1234555678999999999988875  45666554

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.46  E-value=0.02  Score=51.73  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .||.|+|+ |.+|+.++..|+..|. .+|.|+|.+.
T Consensus        22 ~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        22 SHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            38999999 9999999999999885 4999999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK09186 flagellin modification protein A; Provisional

Probab=96.43  E-value=0.04  Score=50.54  Aligned_cols=36  Identities=25%  Similarity=0.264  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.++|.|+||+|.+|.+++..|+..+.  ++++.+++.
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            346899999999999999999999887  899998865

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.43  E-value=0.036  Score=50.64  Aligned_cols=153  Identities=12%  Similarity=0.067  Sum_probs=80.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCChhhhhC-------C-
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALT-------G-  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~-------~-  112 (356)
                      ++|.|+||+|.+|++++..|+..|.  ++++.+.+.. ....++.+.. ...+..+.    ...++.++++       . 
T Consensus         6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQSE-DAAEALADEL-GDRAIALQADVTDREQVQAMFATATEHFGKP   81 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCCCH-HHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4899999999999999999998887  7877665431 1111111110 01111111    0112223332       2 


Q ss_pred             CcEEEEcCCCCC-------CC--CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHH
Q 018433          113 MDLVIIPAGVPR-------KP--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       113 aDiVIi~ag~~~-------~~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~  177 (356)
                      .|++|..+|...       .+  ..+.   ...+..|......+.+.+..+   ...+.+++++......          
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~----------  151 (253)
T PRK08642         82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN----------  151 (253)
T ss_pred             CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC----------
Confidence            899999987521       11  1121   233556665555555554322   2346777776543211          


Q ss_pred             hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCccc
Q 018433          178 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  215 (356)
Q Consensus       178 ~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~  215 (356)
                        ..++.-.++.+......+-+.+++.++  +..|++.
T Consensus       152 --~~~~~~~Y~~sK~a~~~l~~~la~~~~--~~~i~v~  185 (253)
T PRK08642        152 --PVVPYHDYTTAKAALLGLTRNLAAELG--PYGITVN  185 (253)
T ss_pred             --CCCCccchHHHHHHHHHHHHHHHHHhC--ccCeEEE
Confidence              122223456655555566677777764  3445443

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.42  E-value=0.039  Score=49.90  Aligned_cols=113  Identities=19%  Similarity=0.262  Sum_probs=62.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  110 (356)
                      +++|.|+||+|.+|+.++..|++++.  ++++.....   ......++....  ..+..+.. -.|   ..+++      
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG--RRAQAVQADVTDKAALEAAVAAAVER   81 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCcCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999888  666655543   111222222211  22222211 112   12222      


Q ss_pred             -CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHH----HHhCCCcEEEEec
Q 018433          111 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLIS  161 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~t  161 (356)
                       .+.|+||.++|.....   +.+.   .+.+..|......+.+.+    ++.. ...++++|
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~~S  142 (249)
T PRK12825         82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVNIS  142 (249)
T ss_pred             cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEC
Confidence             4679999998853221   1122   334556666666666555    3333 33555554

>PRK06182 short chain dehydrogenase; Validated

Probab=96.42  E-value=0.044  Score=51.07  Aligned_cols=113  Identities=13%  Similarity=0.105  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhC-------CCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT-------GMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~-------~aDi  115 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++...  ..++..... ..+.. .....+..++++       +.|+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGV-HPLSLDVTDEASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            45899999999999999999998887  89999987511  111211110 11111 111122223333       7899


Q ss_pred             EEEcCCCCCC-C--C---CcHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433          116 VIIPAGVPRK-P--G---MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       116 VIi~ag~~~~-~--g---~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      +|..+|.... +  .   ......+..|...    ++.+.+.+++.. .+.|+++|.
T Consensus        78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS  133 (273)
T PRK06182         78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR-SGRIINISS  133 (273)
T ss_pred             EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcc
Confidence            9999986421 1  1   1123344556544    555556665543 346666654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.42  E-value=0.047  Score=50.87  Aligned_cols=33  Identities=24%  Similarity=0.461  Sum_probs=30.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus        34 ~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         34 RVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             eEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            9999999 9999999999999886 4999999875

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.42  E-value=0.11  Score=47.27  Aligned_cols=115  Identities=13%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  110 (356)
                      ..++.|+||+|.+|++++..|+..+.  ++++.+...   ......++.+..  .++..+.. -+|   ..+++      
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999998886  777665432   222223343221  22222211 122   22222      


Q ss_pred             -CCCcEEEEcCCCCCCCC------CcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          111 -TGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                       ...|+||..+|......      ..-.+.+..|......+.+.+..+   ...+.++++|.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence             34799999988643211      112344567776666666665543   23456666654

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.41  E-value=0.026  Score=55.73  Aligned_cols=56  Identities=25%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .++|+|||.+|.+|..++..|.... ..+|+-+|..          |.          ..++..+++++||+||++.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence            4699999998999999999998752 3488999873          11          0235567899999999985

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.057  Score=49.33  Aligned_cols=145  Identities=19%  Similarity=0.148  Sum_probs=78.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCC-eEEE-EeCCCChhhhhCC----CcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA-VVRG-FLGQPQLENALTG----MDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~-~v~~-~~~t~d~~~al~~----aDiVIi  118 (356)
                      .++.|+||+|.+|..++..|+..|.  +++++|++....  .++.+..... .+.. .....+.+++++.    .|.+|+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence            4789999999999999999998887  899999875111  1111111001 1111 0011223333333    477888


Q ss_pred             cCCCCCCCC---CcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEech
Q 018433          119 PAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  191 (356)
Q Consensus       119 ~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~  191 (356)
                      .+|......   .+.   ...+..|......+.+.+..+- ....+++++.-....            +.|..-.++.+.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~------------~~~~~~~Y~asK  145 (240)
T PRK06101         78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL------------ALPRAEAYGASK  145 (240)
T ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc------------CCCCCchhhHHH
Confidence            776432111   122   2456778877777777766542 345566665432211            233333455554


Q ss_pred             hhHHHHHHHHHHHh
Q 018433          192 LDVVRANTFVAEVL  205 (356)
Q Consensus       192 ld~~R~~~~la~~l  205 (356)
                      .....+.+.++..+
T Consensus       146 ~a~~~~~~~l~~e~  159 (240)
T PRK06101        146 AAVAYFARTLQLDL  159 (240)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44445556666544

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.41  E-value=0.016  Score=55.39  Aligned_cols=77  Identities=23%  Similarity=0.400  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--------------hHHHHHhcCCCCCeEEEEeCCCChhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--------------GVTADISHMDTGAVVRGFLGQPQLENA  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--------------g~~~dl~~~~~~~~v~~~~~t~d~~~a  109 (356)
                      .+||+-||| |+||......++.+=+--++.++|++..+              |.-.=..++. +.++- +  ++|.+.+
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~cr-gknlf-f--stdieka   75 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCR-GKNLF-F--STDIEKA   75 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhc-CCcee-e--ecchHHH
Confidence            369999999 99997766555544222399999998611              1110011121 12222 2  4799999


Q ss_pred             hCCCcEEEEcCCCCCC
Q 018433          110 LTGMDLVIIPAGVPRK  125 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~  125 (356)
                      ++.||+|++....|.|
T Consensus        76 i~eadlvfisvntptk   91 (481)
T KOG2666|consen   76 IKEADLVFISVNTPTK   91 (481)
T ss_pred             hhhcceEEEEecCCcc
Confidence            9999999998776643

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.40  E-value=0.028  Score=50.89  Aligned_cols=114  Identities=18%  Similarity=0.304  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  110 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++..  .....++....  ..+..+. .-+|   +..++       
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAF   80 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999998888  7999998762  22222333211  1222211 0112   22222       


Q ss_pred             CCCcEEEEcCCCCCC-C--CCcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEec
Q 018433          111 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLIS  161 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~t  161 (356)
                      ...|.||..+|.... +  ..+.   .+.+..|......+.+.+..+   .....++++|
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s  140 (246)
T PRK05653         81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS  140 (246)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            346999998875221 1  1111   233556666666666555432   2234555555

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.01  Score=54.81  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .++|.|+||+|.+|+.++..|+..|.  +|++++++.
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~   43 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR   43 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence            45899999999999999999998887  899999865

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.40  E-value=0.049  Score=50.11  Aligned_cols=101  Identities=22%  Similarity=0.290  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC----chh-----HHHHHhcCCCCCeEEEEeCCCChhhhhC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN----TPG-----VTADISHMDTGAVVRGFLGQPQLENALT  111 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~----~~g-----~~~dl~~~~~~~~v~~~~~t~d~~~al~  111 (356)
                      .+..||.|+|| |.+|..++..|...|. .++|+++|++.    .+.     ....+.+......   .  ..++.++++
T Consensus        23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~   96 (226)
T cd05311          23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALK   96 (226)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHh
Confidence            34579999999 9999999999987765 23899999983    111     1122222110011   1  125678899


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  166 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~  166 (356)
                      ++|+||-+.+    +|+-.           .++.+.   .+++.+++..+||...
T Consensus        97 ~~dvlIgaT~----~G~~~-----------~~~l~~---m~~~~ivf~lsnP~~e  133 (226)
T cd05311          97 GADVFIGVSR----PGVVK-----------KEMIKK---MAKDPIVFALANPVPE  133 (226)
T ss_pred             cCCEEEeCCC----CCCCC-----------HHHHHh---hCCCCEEEEeCCCCCc
Confidence            9999999864    34311           122233   2467788888899853

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=96.38  E-value=0.032  Score=50.64  Aligned_cols=71  Identities=21%  Similarity=0.315  Sum_probs=45.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC------hhhhhCCCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ------LENALTGMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d------~~~al~~aDiVI  117 (356)
                      |+|.|+||+|.+|+.++..|+..+....+++.+.+....    ..+    ..+..+. .-+|      ..+.+...|+||
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~----~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQH----DNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----ccc----CceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            689999999999999999998875434677777654211    111    1111111 0112      122356889999


Q ss_pred             EcCCCC
Q 018433          118 IPAGVP  123 (356)
Q Consensus       118 i~ag~~  123 (356)
                      ..+|..
T Consensus        73 ~~aG~~   78 (235)
T PRK09009         73 NCVGML   78 (235)
T ss_pred             ECCccc
Confidence            999875

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.38  E-value=0.019  Score=52.19  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+.|+||+|.+|+.++..|+..+.  +++++|++.
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999998887  899999875

>PRK12742 oxidoreductase; Provisional

Probab=96.37  E-value=0.049  Score=49.30  Aligned_cols=156  Identities=17%  Similarity=0.202  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh---hhh---hCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---ENA---LTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~~a---l~~aDiVI  117 (356)
                      .++|.|+||+|.+|+.++..|+..|.  ++++.+..... ...++.... ....... ..+|.   .+.   +...|++|
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~id~li   80 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQET-GATAVQT-DSADRDAVIDVVRKSGALDILV   80 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHh-CCeEEec-CCCCHHHHHHHHHHhCCCcEEE
Confidence            45899999999999999999998887  78877654311 111111100 0111111 11222   122   24479999


Q ss_pred             EcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          118 IPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       118 i~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      ..+|......   .+   -...+..|......++..+... .+.+.+++++.-....           ...+....++.+
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~~Y~~s  149 (237)
T PRK12742         81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR-----------MPVAGMAAYAAS  149 (237)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----------CCCCCCcchHHh
Confidence            9988643211   11   2234455665544444333332 2456666665432211           012334456665


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ......+-+.+++.++  +..|++.++
T Consensus       150 Kaa~~~~~~~la~~~~--~~gi~v~~v  174 (237)
T PRK12742        150 KSALQGMARGLARDFG--PRGITINVV  174 (237)
T ss_pred             HHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            4444456666777764  334444333

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.28  Score=45.57  Aligned_cols=116  Identities=13%  Similarity=0.125  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------CC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------TG  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------~~  112 (356)
                      +.+.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++.... ...+..+. .-+|   .++.+      ..
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            4789999999999999999999987  899999875  233333333221 11222211 1122   22222      35


Q ss_pred             CcEEEEcCCCCCCC---CCcH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          113 MDLVIIPAGVPRKP---GMTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       113 aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      .|++|..+|.+...   ..+.   ...+..|    ....+.+.+.+++. ..+.||++|...
T Consensus        86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~-~~g~Ii~isS~~  146 (263)
T PRK08339         86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK-GFGRIIYSTSVA  146 (263)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCcc
Confidence            79999998865321   1121   2233444    34456666666543 346777776543

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.037  Score=53.08  Aligned_cols=170  Identities=16%  Similarity=0.051  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---h-------hhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---E-------NAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~-------~al  110 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+++.  ......++........+..+. .-+|+   +       +..
T Consensus        14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999999887  899999876  222233343221111222211 11222   1       112


Q ss_pred             CCCcEEEEcCCCCCCC--CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          111 TGMDLVIIPAGVPRKP--GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ...|++|..||....+  ..+   -...+..|...    .+.+.+.+++.  .+.|+++|.-......+-..-+.....+
T Consensus        92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~~~~  169 (313)
T PRK05854         92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWERSY  169 (313)
T ss_pred             CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCcccccccccC
Confidence            4589999999863221  111   22234445443    44455555432  4556666543221100000000000113


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ++...++.+.+....+-..+++.+......|.+..+
T Consensus       170 ~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v  205 (313)
T PRK05854        170 AGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLA  205 (313)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence            333445555555555666677665444444554444

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.34  E-value=0.06  Score=52.00  Aligned_cols=116  Identities=14%  Similarity=0.155  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE--eCCCCh-------hhhhC--
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--LGQPQL-------ENALT--  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~--~~t~d~-------~~al~--  111 (356)
                      ..+.|+||+|.+|.++|..|+..|.  +|+++|+++  ++..+.++........+..+  .-++|.       .+.+.  
T Consensus        54 ~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         54 SWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            4799999999999999999999887  899999987  33344445432111122211  011121       12233  


Q ss_pred             CCcEEEEcCCCCCC---C--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRK---P--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~---~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      |.|++|..+|....   +  ..+   -...+..|......+.+.+...   ...+.|+++|.
T Consensus       132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS  193 (320)
T PLN02780        132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGS  193 (320)
T ss_pred             CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            45589999886421   1  112   1234556665555555444322   23466676654

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.33  E-value=0.03  Score=51.85  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .+++.|+||+|.+|++++..|+..|.  +|+++|++.
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999887  899999865

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.33  E-value=0.027  Score=54.79  Aligned_cols=66  Identities=20%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +.+||+|||. |++|.+++..|...+.  +++..+.+.....  +......   +..    .+..+++++||+|+++.
T Consensus        16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~--~~A~~~G---~~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSW--KKAEADG---FEV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhH--HHHHHCC---Cee----CCHHHHHhcCCEEEEcC
Confidence            4569999999 9999999999998887  8888776541111  1111111   111    25678999999999985

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.052  Score=50.51  Aligned_cols=115  Identities=19%  Similarity=0.156  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCC-------hhhhhCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQ-------LENALTGM  113 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d-------~~~al~~a  113 (356)
                      .++|.|+||+|.+|..++..|+..|.  .+++.+++.  +.....++..... ..++.   ...+       ..+.+.+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~~~i   79 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGGPLDVT---DPASFAAFLDAVEADLGPI   79 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEEEccCC---CHHHHHHHHHHHHHHcCCC
Confidence            45899999999999999999998887  789999875  2222222221100 00111   0011       11223568


Q ss_pred             cEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCCC
Q 018433          114 DLVIIPAGVPRKPG---MT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       114 DiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNPv  164 (356)
                      |++|..+|......   .+   -...+..|+.....    +.+.+.+. ..+.|+++|.-.
T Consensus        80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~  139 (273)
T PRK07825         80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVASLA  139 (273)
T ss_pred             CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCcc
Confidence            99999998643211   11   22345566654444    44444432 345677776543

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.056  Score=49.58  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.++|.|+||+|.+|++++..|+..+.  +|++++++.
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999998887  899999875

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.32  E-value=0.022  Score=55.46  Aligned_cols=98  Identities=20%  Similarity=0.269  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|||. |.+|+.+|..|..-|.  +|+.+|.......  +... .    +. .   .++.+.+++||+|++..-.
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~-~----~~-~---~~l~ell~~aDiV~l~lP~  214 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKEL-G----AE-Y---RPLEELLRESDFVSLHVPL  214 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHc-C----CE-e---cCHHHHHhhCCEEEEeCCC
Confidence            4579999999 9999999999987776  8999998642111  1111 1    11 1   3577889999999998522


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  167 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~  167 (356)
                        .+         .+..++-+  +.+....|++++||++  ..+|.-
T Consensus       215 --t~---------~T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~~  248 (333)
T PRK13243        215 --TK---------ETYHMINE--ERLKLMKPTAILVNTARGKVVDTK  248 (333)
T ss_pred             --Ch---------HHhhccCH--HHHhcCCCCeEEEECcCchhcCHH
Confidence              11         11112211  2333334789999986  566644

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=96.31  E-value=0.038  Score=58.70  Aligned_cols=97  Identities=19%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh--CCCcEEE
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVI  117 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al--~~aDiVI  117 (356)
                      +..+.|||.|+||+|++|++++..|...+.  ++... ..       |+.+.            ..+...+  .+.|+||
T Consensus       376 ~~~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~~-------~l~d~------------~~v~~~i~~~~pd~Vi  433 (668)
T PLN02260        376 PGKPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-KG-------RLEDR------------SSLLADIRNVKPTHVF  433 (668)
T ss_pred             CCCCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-cc-------ccccH------------HHHHHHHHhhCCCEEE
Confidence            344568999999999999999999988775  54211 10       11110            0011222  2689999


Q ss_pred             EcCCCCCCC--C---CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 018433          118 IPAGVPRKP--G---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  160 (356)
Q Consensus       118 i~ag~~~~~--g---~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  160 (356)
                      .+|+....+  +   ....+....|+.....+++.+++...  .++++
T Consensus       434 h~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~--~~v~~  479 (668)
T PLN02260        434 NAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL--LMMNF  479 (668)
T ss_pred             ECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC--eEEEE
Confidence            998764322  1   23456678999999999999998754  34444

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.31  E-value=0.048  Score=50.13  Aligned_cols=114  Identities=20%  Similarity=0.265  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------hC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  ++++.|++.  ......++.+..  ..+..+. .-+|.   ++.       +.
T Consensus        10 k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (254)
T PRK08085         10 KNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDIG   85 (254)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999998887  999999876  233333343321  1121111 11221   111       23


Q ss_pred             CCcEEEEcCCCCCC-C--CC---cHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRK-P--GM---TRDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-~--g~---~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  162 (356)
                      ..|+||..+|.... +  ..   +-...+..|......+.+.+.++.   ..+.|+++|.
T Consensus        86 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  145 (254)
T PRK08085         86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS  145 (254)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            57999999986321 1  11   122345666555555555544432   3456666654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.31  E-value=0.071  Score=48.68  Aligned_cols=113  Identities=16%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al~  111 (356)
                      ++|.|+||+|.+|+.++..|+..|.  +|++++++.  ......++....  ..+.... .-+|.          .+.+.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG   77 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            3799999999999999999998887  899999876  222222222211  1222211 11222          23356


Q ss_pred             CCcEEEEcCCCCCC-CC--Cc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRK-PG--MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-~g--~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN  162 (356)
                      +.|+||..+|.... +.  .+   -...+..|......+.+.+    ++.. ...++++|.
T Consensus        78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~~v~~ss  137 (255)
T TIGR01963        78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG-WGRIINIAS  137 (255)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence            78999999876321 11  11   1233455666555555544    3333 335555554

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.099  Score=48.22  Aligned_cols=115  Identities=21%  Similarity=0.280  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------C
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------~  111 (356)
                      ..++.|+||+|.+|+.++..|+..|.  ++++++.+. ......++...  ...+..+.. -+|   ..+++       .
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999887  899999875 22222223221  112222111 122   22222       3


Q ss_pred             CCcEEEEcCCCCCC-C--C---CcHHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRK-P--G---MTRDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-~--g---~~r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  162 (356)
                      ..|+||..+|.... +  .   ......+..|+.....+.+.+..+.   ..+.++++|.
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS  141 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSS  141 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            56999999886321 1  1   1123345667666655555544332   3455666544

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.066  Score=49.80  Aligned_cols=114  Identities=19%  Similarity=0.138  Sum_probs=64.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------~  111 (356)
                      ++|.|+||+|.+|+.++..|+..|.  +|++.|++.  +.....++....  ..+..+. ..+|.   .+.+       .
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999887  899999875  222233343321  1222111 11222   2222       3


Q ss_pred             CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      ..|+||..+|.....   ..+   -...+..|....    +.+.+.+++.. .+.|+++|.-
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS~  137 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIASM  137 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            689999998864211   111   122345564433    44444444433 3566666543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.30  E-value=0.013  Score=49.14  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            49999999 9999999999998886 5999999875

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.29  E-value=0.019  Score=54.51  Aligned_cols=67  Identities=27%  Similarity=0.293  Sum_probs=42.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHH--HHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~--~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .++|+|+|. |.+|..++..|...++...++=+|.+... ..+  +++.+.        . ......++.++||+||++.
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~--------~-~~~~~~~~~~~aD~Vivav   72 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDE--------L-TVAGLAEAAAEADLVIVAV   72 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccc--------c-ccchhhhhcccCCEEEEec
Confidence            469999998 99999999999999984444444443211 111  111111        0 0112247789999999984

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.29  E-value=0.024  Score=54.34  Aligned_cols=77  Identities=21%  Similarity=0.351  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ...+|+|||.+|.||..++..|...+.  ++.+++...                       .++.+..+.||+||.+.|.
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~  212 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR  212 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence            456999999966999999999998887  888887531                       2467888999999999876


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV  164 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv  164 (356)
                      |.   .-..++                 ..|.++||.++ |++
T Consensus       213 ~~---~v~~~~-----------------ik~GaiVIDvgin~~  235 (301)
T PRK14194        213 PR---LIDADW-----------------LKPGAVVIDVGINRI  235 (301)
T ss_pred             hh---cccHhh-----------------ccCCcEEEEeccccc
Confidence            52   111111                 44889998886 764

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.12  Score=47.84  Aligned_cols=115  Identities=22%  Similarity=0.230  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh---hh------hC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------LT  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~a------l~  111 (356)
                      ..+|.|+||+|.+|..++..|+..|.  +|++++++.  ......++..   ...+..+. .-+|.+   +.      +.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            45899999999999999999999887  899999875  2222222311   11222221 112221   11      24


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                      ..|+||.++|......   .+   -...+..|......+.+.+.++   .+.+.+++++..
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~  140 (263)
T PRK09072         80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST  140 (263)
T ss_pred             CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence            6799999998643211   11   1234556766666666555443   233566666553

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.29  E-value=0.014  Score=52.03  Aligned_cols=77  Identities=19%  Similarity=0.231  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe--CCCChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi  118 (356)
                      +.+++.|+||+|.+|..++..|+..+.  ++++++++.  +.....++.+.. ...+....  ...++.++++++|+||.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            446999999889999999999988775  899999865  222333333211 12222211  11233578899999888


Q ss_pred             cCCC
Q 018433          119 PAGV  122 (356)
Q Consensus       119 ~ag~  122 (356)
                      +...
T Consensus       104 at~~  107 (194)
T cd01078         104 AGAA  107 (194)
T ss_pred             CCCC
Confidence            7543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.12  Score=47.43  Aligned_cols=114  Identities=13%  Similarity=0.104  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-------  111 (356)
                      ..+|.|+||+|.+|..++..|+..|.  ++++.+.++ ......++....  ..+..+.. -+|   ++.+++       
T Consensus         7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            35899999999999999999999887  788888876 222233343221  12222111 122   222332       


Q ss_pred             CCcEEEEcCCCCCCCC-----CcHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEec
Q 018433          112 GMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCC--PNATVNLIS  161 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g-----~~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~t  161 (356)
                      ..|+||..+|......     .+-...+..|......+.+...++.  ..+.++++|
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s  139 (258)
T PRK08628         83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS  139 (258)
T ss_pred             CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence            5799999998532221     1122345667665555555544332  234555554

>TIGR02415 23BDH acetoin reductases

Probab=96.26  E-value=0.14  Score=46.79  Aligned_cols=112  Identities=17%  Similarity=0.269  Sum_probs=63.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------hCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------LTG  112 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l~~  112 (356)
                      ++.|+||+|.+|..++..|+..|.  ++++++.+.  ......++....  ..+..+.. -+|.   .++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999998887  899999875  222223333221  22222211 1222   122       235


Q ss_pred             CcEEEEcCCCCCC-C--CCcHH---HHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 018433          113 MDLVIIPAGVPRK-P--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       113 aDiVIi~ag~~~~-~--g~~r~---~~~~~N~~i----~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .|+||..+|.... +  +.+..   ..+..|...    ++.+.+.+++....+.++++|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            6999999886321 1  22222   234455543    344455555544446666554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.26  E-value=0.1  Score=47.19  Aligned_cols=116  Identities=21%  Similarity=0.291  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  110 (356)
                      .++|.|+||+|.+|+.++..|+..|.  ++++...+..   .....++....  ..+..+. .-+|   +.+++      
T Consensus         5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (248)
T PRK05557          5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKAE   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999998887  7767665542   12222232211  1222211 0112   11222      


Q ss_pred             -CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 018433          111 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP  163 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNP  163 (356)
                       .+.|.||..+|.....   ..+.   ...+..|......+.+.+.++.   +...++++|..
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~  143 (248)
T PRK05557         81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSV  143 (248)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence             3689999998864321   1112   2234567776666766666543   23456666543

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.26  E-value=0.086  Score=48.87  Aligned_cols=154  Identities=13%  Similarity=0.161  Sum_probs=81.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------hC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  ++++.|.+.  ......++....  .++..+. .-+|.   +++       +.
T Consensus        11 k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097         11 KIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4799999999999999999998887  889998875  222333343221  1222211 11222   112       23


Q ss_pred             CCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ..|++|..+|.... +  ..+   -...+..|.....    .+.+.+.+ ...+.|++++......            +.
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~------------~~  153 (265)
T PRK07097         87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMMSEL------------GR  153 (265)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCccccC------------CC
Confidence            47999999886321 1  111   1223344554333    34444433 3456777776654321            22


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +....++.+...-..+-+.+++.++  +..|++..+
T Consensus       154 ~~~~~Y~~sKaal~~l~~~la~e~~--~~gi~v~~v  187 (265)
T PRK07097        154 ETVSAYAAAKGGLKMLTKNIASEYG--EANIQCNGI  187 (265)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhh--hcCceEEEE
Confidence            2333445543333345566666653  344544433

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.26  E-value=0.048  Score=48.06  Aligned_cols=33  Identities=39%  Similarity=0.587  Sum_probs=29.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|+|+ |.+|+.++..|+..|. .+++|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899999 9999999999998886 4899999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.24  Score=45.32  Aligned_cols=156  Identities=18%  Similarity=0.159  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~a  109 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  ++++.+...   ......++....  .....+. .-+|.          .+.
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNE   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHHhcC--CceEEEecccCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999887  788875432   222333333211  1111100 00111          111


Q ss_pred             ------hCCCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHH
Q 018433          110 ------LTGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK  176 (356)
Q Consensus       110 ------l~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~  176 (356)
                            ....|++|..+|.... +  ..+   -...+..|+.....+.+.+...- ..+.||++|.-....         
T Consensus        80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------  150 (252)
T PRK12747         80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI---------  150 (252)
T ss_pred             hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc---------
Confidence                  1268999999986321 1  111   13344566655555555444332 346777776543221         


Q ss_pred             HhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          177 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       177 ~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                         +.|..-.++.+......+-+.++..++  +..|++..+
T Consensus       151 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~girvn~v  186 (252)
T PRK12747        151 ---SLPDFIAYSMTKGAINTMTFTLAKQLG--ARGITVNAI  186 (252)
T ss_pred             ---CCCCchhHHHHHHHHHHHHHHHHHHHh--HcCCEEEEE
Confidence               122222344444444456666777664  344544333

>PRK07574 formate dehydrogenase; Provisional

Probab=96.24  E-value=0.036  Score=55.07  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...++|+|||. |.+|..+|..|..-|.  +|+.+|+......   .....   .+..   ..++++.++.||+|++...
T Consensus       190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~---~~~~~---g~~~---~~~l~ell~~aDvV~l~lP  257 (385)
T PRK07574        190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEE---VEQEL---GLTY---HVSFDSLVSVCDVVTIHCP  257 (385)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchh---hHhhc---Ccee---cCCHHHHhhcCCEEEEcCC
Confidence            34579999999 9999999999986666  9999998652111   11110   1221   1357889999999999853


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  167 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~  167 (356)
                      ..           ..+-.++-  .+.+....|.+++||++  ..+|.-
T Consensus       258 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~  292 (385)
T PRK07574        258 LH-----------PETEHLFD--ADVLSRMKRGSYLVNTARGKIVDRD  292 (385)
T ss_pred             CC-----------HHHHHHhC--HHHHhcCCCCcEEEECCCCchhhHH
Confidence            21           11222221  23333345789999986  555544

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.23  E-value=0.0062  Score=55.58  Aligned_cols=104  Identities=19%  Similarity=0.281  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------chhHHHH---HhcCCC-------CCeEEEEeCCCChhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTAD---ISHMDT-------GAVVRGFLGQPQLEN  108 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~------~~g~~~d---l~~~~~-------~~~v~~~~~t~d~~~  108 (356)
                      -||+|+|. |.+|+..|..++..|+  ++.|||+.+      ++....|   |+....       ...+..++++++++|
T Consensus         4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            49999998 9999999999999999  999999987      2222223   332210       011222446788888


Q ss_pred             hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                      ..++|=.|=.+              +-+-+..-+.+.+++.+.. |..  |..|.....+
T Consensus        81 ~vk~Ai~iQEc--------------vpE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~m  124 (313)
T KOG2305|consen   81 LVKGAIHIQEC--------------VPEDLNLKKQLYKQLDEIADPTT--ILASSTSTFM  124 (313)
T ss_pred             HHhhhhhHHhh--------------chHhhHHHHHHHHHHHHhcCCce--EEeccccccC
Confidence            88887443223              1234455667777888776 444  3455554444

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.23  E-value=0.023  Score=53.04  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=45.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||+ |.+|+.++..|...++ ...+.++|.+...  +..+.+..  ..+..   .++..++++++|+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~---~~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRI---AKDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceE---eCCHHHHHHhCCEEEEEe
Confidence            58999999 9999999999988764 3456778875421  22222211  11222   235567789999999985

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.22  E-value=0.048  Score=52.31  Aligned_cols=114  Identities=13%  Similarity=0.032  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++++++.  ......++...  ...+..+. .-+|   .+++++      
T Consensus         6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (322)
T PRK07453          6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG   81 (322)
T ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45799999999999999999998886  899999875  22223333211  11222211 1122   222222      


Q ss_pred             -CCcEEEEcCCCCCC----CCCc---HHHHHHHHHHHHHHH----HHHHHHhCC-CcEEEEec
Q 018433          112 -GMDLVIIPAGVPRK----PGMT---RDDLFNINAGIVRTL----CEGIAKCCP-NATVNLIS  161 (356)
Q Consensus       112 -~aDiVIi~ag~~~~----~g~~---r~~~~~~N~~i~~~i----~~~i~~~~p-~a~viv~t  161 (356)
                       ..|++|..||....    ...+   ....+..|......+    .+.+.+... .+.|+++|
T Consensus        82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence             48999999985321    1122   223455666544444    444444332 34666665

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.064  Score=49.71  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      +++.|+||+|.+|.+++..|+..|.  +++++|.+........ .+.. ...+.. .....+..+.+...|++|..||..
T Consensus        15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESN-DESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhh-ccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            4899999999999999999999887  8999998752111111 1111 111111 111123345567899999999864


Q ss_pred             CCCCCc---HHHHHHHHHHHHHHHHHHHH
Q 018433          124 RKPGMT---RDDLFNINAGIVRTLCEGIA  149 (356)
Q Consensus       124 ~~~g~~---r~~~~~~N~~i~~~i~~~i~  149 (356)
                      .....+   -.+.+..|......+++.+.
T Consensus        91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  119 (245)
T PRK12367         91 PGGRQDPENINKALEINALSSWRLLELFE  119 (245)
T ss_pred             CcCCCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence            222222   23445667655555554433

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.22  E-value=0.052  Score=52.42  Aligned_cols=97  Identities=20%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|+|. |.+|..+|..|..-|.  +|+.+|......     .      .+..+....++++.+++||+|+++...
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~-----~------~~~~~~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW-----P------GVQSFAGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC-----C------CceeecccccHHHHHhcCCEEEECCCC
Confidence            4469999999 9999999999986676  899999753110     0      000111124678999999999997521


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  166 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~  166 (356)
                      .           ..|..++-  .+.+.+..|++++||++  .=+|.
T Consensus       201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~vVde  233 (312)
T PRK15469        201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLARGVHVVE  233 (312)
T ss_pred             C-----------HHHHHHhH--HHHHhcCCCCcEEEECCCccccCH
Confidence            1           12222221  23444455889999986  44443

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.21  E-value=0.25  Score=46.04  Aligned_cols=75  Identities=23%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  .|+++|++.  ......++.+..  ..+..+.. -+|   ..++       +
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDF   85 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999998887  899999875  233333343221  12222111 112   1112       2


Q ss_pred             CCCcEEEEcCCC
Q 018433          111 TGMDLVIIPAGV  122 (356)
Q Consensus       111 ~~aDiVIi~ag~  122 (356)
                      ...|++|..+|.
T Consensus        86 g~id~li~~ag~   97 (278)
T PRK08277         86 GPCDILINGAGG   97 (278)
T ss_pred             CCCCEEEECCCC
Confidence            468999999885

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.15  Score=46.84  Aligned_cols=156  Identities=15%  Similarity=0.171  Sum_probs=84.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------  110 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+++.  ......++.+..  ..+..+. .-+|.   ++++       
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF   81 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            34899999999999999999999887  899999876  333333443321  1222211 11221   2222       


Q ss_pred             CCCcEEEEcCCCCC--CC--CCc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 TGMDLVIIPAGVPR--KP--GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 ~~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      ...|++|..+|...  .+  ..+   -...+..|..    ..+...+.+.+. ..+.|++++......           .
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~~-----------~  149 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGHT-----------A  149 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhhc-----------c
Confidence            36799999998631  22  122   2334566664    344445555443 345666665432110           1


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +.+..-.++.+......+-+.+++.++  +..|++..+
T Consensus       150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  185 (254)
T PRK07478        150 GFPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL  185 (254)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence            233333455544334456666677664  344544433

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.074  Score=48.77  Aligned_cols=75  Identities=16%  Similarity=0.182  Sum_probs=47.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCC---ChhhhhC-CCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQP---QLENALT-GMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al~-~aDiVI  117 (356)
                      ++|.|+||+|.+|+.++..|+..|.  .+++.+.+.  ......+.....  ..+.... .-+   ++..++. +.|+||
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi   78 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLL   78 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence            3799999999999999999999887  888888765  111111111111  1122111 112   2333444 899999


Q ss_pred             EcCCCC
Q 018433          118 IPAGVP  123 (356)
Q Consensus       118 i~ag~~  123 (356)
                      ..+|..
T Consensus        79 ~~ag~~   84 (257)
T PRK09291         79 NNAGIG   84 (257)
T ss_pred             ECCCcC
Confidence            999865

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.20  E-value=0.019  Score=54.95  Aligned_cols=63  Identities=16%  Similarity=0.304  Sum_probs=45.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||. |.+|+.++..|...++  ++..+|+++.   +.++....    ...   ..+..++.++||+||++.
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            58999999 9999999999999887  8889998651   12232211    111   134567789999999974

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.19  E-value=0.031  Score=52.68  Aligned_cols=97  Identities=18%  Similarity=0.242  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++||++||+ |++|..++..|...+ + ..+|+..|.++...  .++.... +...     ++|..++..++|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~--~~l~~~~-g~~~-----~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKR--AALAAEY-GVVT-----TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHH--HHHHHHc-CCcc-----cCcHHHHHhhCCEEEEEe-
Confidence            479999999 999999999999887 2 36888888765211  1233321 1111     345568889999999985 


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                         ||            ..+.++...++...++-.||-+.-.+.
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence               33            236677777776445666665555443

>PRK08264 short chain dehydrogenase; Validated

Probab=96.19  E-value=0.073  Score=48.25  Aligned_cols=142  Identities=11%  Similarity=0.061  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe----CCCChhhhh---CCCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENAL---TGMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al---~~aDiV  116 (356)
                      .++|.|+||+|.+|+.++..|+..|. .+|++++++......     .  ...+..+.    ...++++.+   ...|+|
T Consensus         6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~-----~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   77 (238)
T PRK08264          6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD-----L--GPRVVPLQLDVTDPASVAAAAEAASDVTIL   77 (238)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh-----c--CCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            35899999999999999999998774 378889886521111     1  11111111    112223333   357999


Q ss_pred             EEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCE
Q 018433          117 IIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  186 (356)
Q Consensus       117 Ii~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kv  186 (356)
                      |.++|.....+    .+   -...+..|......+.+.+.+.   ...+.++++|......            +.+....
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~------------~~~~~~~  145 (238)
T PRK08264         78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV------------NFPNLGT  145 (238)
T ss_pred             EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc------------CCCCchH
Confidence            99998732111    11   1233456666666666655432   2345677666544221            2233333


Q ss_pred             EEechhhHHHHHHHHHHHh
Q 018433          187 LGVTMLDVVRANTFVAEVL  205 (356)
Q Consensus       187 iG~t~ld~~R~~~~la~~l  205 (356)
                      +|.+......+-..++..+
T Consensus       146 y~~sK~a~~~~~~~l~~~~  164 (238)
T PRK08264        146 YSASKAAAWSLTQALRAEL  164 (238)
T ss_pred             hHHHHHHHHHHHHHHHHHh
Confidence            4444333334555556655

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.18  E-value=0.24  Score=45.52  Aligned_cols=115  Identities=17%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l  110 (356)
                      .++|.|+||+|.+|++++..|+..|.  +++++|.+.  ......++.+..  ..+..+. .-+|.   .++       +
T Consensus        11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   86 (255)
T PRK06113         11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL   86 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998887  889999865  222333343321  1111111 11222   122       2


Q ss_pred             CCCcEEEEcCCCCCC--CCCcHH---HHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRK--PGMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~--~g~~r~---~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      ...|++|..+|....  ...+..   ..+..|+.....+.+.+..+   ...+.++++|.
T Consensus        87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  146 (255)
T PRK06113         87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS  146 (255)
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            357999999885321  122222   23566766666566555432   23345666654

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.5  Score=43.56  Aligned_cols=78  Identities=18%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh------
Q 018433           44 GFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G-~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  110 (356)
                      .+++.|+||+| .+|..++..|+..|.  +|++.|.+.  ......++........+..+.. -+|   .++++      
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   94 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER   94 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35899999977 599999999998887  799999865  2222233332111112322211 112   22222      


Q ss_pred             -CCCcEEEEcCCCC
Q 018433          111 -TGMDLVIIPAGVP  123 (356)
Q Consensus       111 -~~aDiVIi~ag~~  123 (356)
                       ...|++|..+|..
T Consensus        95 ~g~id~li~~ag~~  108 (262)
T PRK07831         95 LGRLDVLVNNAGLG  108 (262)
T ss_pred             cCCCCEEEECCCCC
Confidence             3679999999864

>PLN02712 arogenate dehydrogenase

Probab=96.18  E-value=0.029  Score=59.70  Aligned_cols=68  Identities=18%  Similarity=0.180  Sum_probs=46.8

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh-CCCcEEEE
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVII  118 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi  118 (356)
                      +..+++||+|||. |.+|..++..|...|.  +|+.+|.+.....+.+   .  .  +..   .+|+.+.+ ++||+||+
T Consensus        48 ~~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~---~--G--v~~---~~d~~e~~~~~aDvViL  114 (667)
T PLN02712         48 DNTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARS---L--G--VSF---FLDPHDLCERHPDVILL  114 (667)
T ss_pred             ccCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHH---c--C--CEE---eCCHHHHhhcCCCEEEE
Confidence            3455689999998 9999999999988876  8999998742211111   1  1  122   23555544 57999999


Q ss_pred             cC
Q 018433          119 PA  120 (356)
Q Consensus       119 ~a  120 (356)
                      +.
T Consensus       115 av  116 (667)
T PLN02712        115 CT  116 (667)
T ss_pred             cC
Confidence            84

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.067  Score=49.19  Aligned_cols=112  Identities=20%  Similarity=0.175  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhhC-------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT-------  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al~-------  111 (356)
                      .++.|+||+|.+|..++..|+..+.  +|+++|++.  ......++...    .+..+. .-.|.   ..++.       
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADALGDA----RFVPVACDLTDAASLAAALANAAAERG   76 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC----ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3799999999999999999998886  899999875  22222333211    111110 11222   22332       


Q ss_pred             CCcEEEEcCCCCCCCC---CcH---HHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      ..|+||..+|......   .+.   ...+..|......+.+.+...   ...+.++++|.
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  136 (257)
T PRK07074         77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGS  136 (257)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence            4799999988632211   111   122345655555555555322   23455666655

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.43  Score=43.28  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.++|.|+||+|.+|.+++..|+..|.  .|++++++.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            345899999999999999999998887  899999876

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.075  Score=48.69  Aligned_cols=114  Identities=11%  Similarity=0.096  Sum_probs=65.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------hC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l~  111 (356)
                      .+|.|+||+|.+|.+++..|+..|.  .|+++|++.  ......++.+..  .....+. .-+|.   +++       +.
T Consensus         9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK07035          9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHG   84 (252)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998887  899999875  233333343321  1111111 11222   122       23


Q ss_pred             CCcEEEEcCCCCC--CC--CCcH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433          112 GMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  162 (356)
                      ..|++|..+|...  .+  ..+.   ...+..|......+.+.+.++.   ..+.+++++.
T Consensus        85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  145 (252)
T PRK07035         85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVAS  145 (252)
T ss_pred             CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECc
Confidence            5799999887421  11  1222   2345566665555554443332   3456666654

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.15  E-value=0.46  Score=43.77  Aligned_cols=157  Identities=15%  Similarity=0.136  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEE-eCCCChh---hh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGF-LGQPQLE---NA-------  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~-~~t~d~~---~a-------  109 (356)
                      .+++.|+||+|.+|..++..|+..+.  .+++.+.+.   ......++....  ..+..+ ..-+|.+   +.       
T Consensus         7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~   82 (261)
T PRK08936          7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVKE   82 (261)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998886  777776643   222223333221  122211 1112321   11       


Q ss_pred             hCCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          110 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      +...|++|..+|.....   ..+.   ...+..|+..    .+.+.+.+.+....+.++++|.-...            .
T Consensus        83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~------------~  150 (261)
T PRK08936         83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ------------I  150 (261)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc------------C
Confidence            23579999998864221   1112   2234556443    34455555555555677766542211            1


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      +.|..-.++.+......+-+.++..+.  +..|++.++.
T Consensus       151 ~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v~  187 (261)
T PRK08936        151 PWPLFVHYAASKGGVKLMTETLAMEYA--PKGIRVNNIG  187 (261)
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEEEEEE
Confidence            233333455543333345555666553  3455554443

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.15  E-value=0.21  Score=45.54  Aligned_cols=114  Identities=15%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      +++.|+||+|.+|..++..|+..|.  ++++. +.+.  ......++....  ..+..+.. -+|   ...++       
T Consensus         5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (250)
T PRK08063          5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEEF   80 (250)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999886  76654 4443  222223333221  12222111 112   22223       


Q ss_pred             CCCcEEEEcCCCCC-CC--CCcH---HHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPR-KP--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~-~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  162 (356)
                      ...|+||..+|... .+  ..+.   ...+..|......+++.+.++.   +.+.|+++|.
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS  141 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSS  141 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            25899999987532 11  1111   1234456655555555555432   3456666664

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.25  Score=45.43  Aligned_cols=154  Identities=15%  Similarity=0.135  Sum_probs=81.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-----
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-----  109 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~------~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-----  109 (356)
                      +++.|+||+|.+|.+++..|+..|.  ++++++.+.      ......++....  ..+..+. .-+|   .+++     
T Consensus         9 k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~   84 (257)
T PRK12744          9 KVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK   84 (257)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence            5899999999999999999998887  766665432      111222232211  1222211 0122   2222     


Q ss_pred             --hCCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHHhC
Q 018433          110 --LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       110 --l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~~~~~~~~~~  179 (356)
                        +...|++|..+|.....   ..+   -...+..|......+.+.+.... +.+.++++ +.-....            
T Consensus        85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~------------  152 (257)
T PRK12744         85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF------------  152 (257)
T ss_pred             HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc------------
Confidence              23679999999864211   112   22345567666555555554432 34444443 3322211            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                       .|....++.+......+-+.+++.++  +..|++..+
T Consensus       153 -~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v  187 (257)
T PRK12744        153 -TPFYSAYAGSKAPVEHFTRAASKEFG--ARGISVTAV  187 (257)
T ss_pred             -CCCcccchhhHHHHHHHHHHHHHHhC--cCceEEEEE
Confidence             12223456654445567778888875  444544444

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.14  E-value=0.05  Score=45.99  Aligned_cols=33  Identities=24%  Similarity=0.508  Sum_probs=29.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6899999 9999999999999887 4899999874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.13  E-value=0.037  Score=50.97  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +..+|.|+||+|.+|.+++..|+..|.  +++++|++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            346899999999999999999998887  899999875

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.13  E-value=0.05  Score=51.25  Aligned_cols=98  Identities=23%  Similarity=0.268  Sum_probs=62.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC-CCcEEEEcCCCCCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVPRK  125 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~ag~~~~  125 (356)
                      |+|+|++|+||+++...|...++  +|..+-++......  ..+    ..+...   +.+.+... ++|+||..||.|--
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~----~~v~~~---~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLH----PNVTLW---EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcC----cccccc---chhhhcccCCCCEEEECCCCccc
Confidence            68999999999999999999988  88888876522111  111    111111   11223233 79999999998742


Q ss_pred             CC---Cc-HHHHHHHHHHHHHHHHHHHHHhCCCc
Q 018433          126 PG---MT-RDDLFNINAGIVRTLCEGIAKCCPNA  155 (356)
Q Consensus       126 ~g---~~-r~~~~~~N~~i~~~i~~~i~~~~p~a  155 (356)
                      ..   .. -..+...-+...+.+.+.|.+.....
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P  103 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP  103 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence            22   11 22344455677788888888766444

>PRK06398 aldose dehydrogenase; Validated

Probab=96.12  E-value=0.03  Score=51.88  Aligned_cols=151  Identities=13%  Similarity=0.126  Sum_probs=80.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhh-------hCCCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA-------LTGMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a-------l~~aDiV  116 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|+++..........    .++.   ...+.+++       +...|++
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~----~D~~---~~~~i~~~~~~~~~~~~~id~l   76 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFK----VDVS---NKEQVIKGIDYVISKYGRIDIL   76 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEE----ccCC---CHHHHHHHHHHHHHHcCCCCEE
Confidence            35899999999999999999999887  8999998652110000000    0110   01112222       3468999


Q ss_pred             EEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEE
Q 018433          117 IIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  187 (356)
Q Consensus       117 Ii~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kvi  187 (356)
                      |..+|.+.. +  ..+   -...+..|......+.+.+.++   ...+.||++|.-...            .+.+..-.+
T Consensus        77 i~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~~Y  144 (258)
T PRK06398         77 VNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSF------------AVTRNAAAY  144 (258)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhc------------cCCCCCchh
Confidence            999986421 1  112   2233556665544444443322   245667766542211            123333445


Q ss_pred             EechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          188 GVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       188 G~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      +.+......+-+.++..++  +. |++..+.
T Consensus       145 ~~sKaal~~~~~~la~e~~--~~-i~vn~i~  172 (258)
T PRK06398        145 VTSKHAVLGLTRSIAVDYA--PT-IRCVAVC  172 (258)
T ss_pred             hhhHHHHHHHHHHHHHHhC--CC-CEEEEEe
Confidence            5543333445666677664  33 6544443

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.11  E-value=0.27  Score=45.17  Aligned_cols=115  Identities=16%  Similarity=0.208  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~e-l~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al------  110 (356)
                      .++|.|+||+|.+|+.++..|+..+.  + |+++|++.  ......++...  ...+..+. .-+|.   .+++      
T Consensus         6 ~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK06198          6 GKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADEA   81 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998876  5 99999875  22222233221  12222111 11222   1222      


Q ss_pred             -CCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433          111 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  162 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  162 (356)
                       .+.|+||.++|.....   ..+.   ...+..|+.-...+.+.    +.+....+.++++|.
T Consensus        82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss  144 (260)
T PRK06198         82 FGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS  144 (260)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence             3689999999865321   1122   22345565544444443    333333456666654

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.10  E-value=0.13  Score=47.37  Aligned_cols=154  Identities=17%  Similarity=0.135  Sum_probs=80.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------  110 (356)
                      +.+++.|+||+|.+|++++..|+..|.  +|+++|+++ ......++....  ..+..+. .-+|.   .+++       
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAF   82 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            345899999999999999999999887  899999875 222222332211  1221110 11222   2222       


Q ss_pred             CCCcEEEEcCCCCC--CC--CCcH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 TGMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 ~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      ...|++|..+|...  .+  ..+.   ...+..|+.    ..+.+.+.+.+.. .+.|+++|.....             
T Consensus        83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~-------------  148 (260)
T PRK12823         83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSSIATR-------------  148 (260)
T ss_pred             CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcCcccc-------------
Confidence            36799999987431  11  1121   222344443    3445555555432 3566666543210             


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      + +..-.++.+......+-+.++..+.  +..|++..+
T Consensus       149 ~-~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  183 (260)
T PRK12823        149 G-INRVPYSAAKGGVNALTASLAFEYA--EHGIRVNAV  183 (260)
T ss_pred             C-CCCCccHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            0 0112345544334456666777663  344544433

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.1  Score=49.59  Aligned_cols=116  Identities=23%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l  110 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++++++.  ......++........+..+.. -+|.   +++       +
T Consensus        16 ~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         16 GRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            35899999999999999999999887  899999875  2222223332111112222111 1222   111       2


Q ss_pred             CCCcEEEEcCCCCCCCC----CcHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKPG----MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g----~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ...|+||..||....+.    ..-...+..|...    .+.+.+.+++. ..+.|+++|.
T Consensus        94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS  152 (306)
T PRK06197         94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSS  152 (306)
T ss_pred             CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECC
Confidence            35899999998532111    1112234555544    55666666543 3456777664

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.08  E-value=0.035  Score=53.01  Aligned_cols=98  Identities=19%  Similarity=0.224  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ....+|+|+|+ |.+|..++..|...|.  +|+++|++... . ........ ..+.    ..++.+.++++|+||.+..
T Consensus       149 l~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~-~-~~~~~~g~-~~~~----~~~l~~~l~~aDiVint~P  218 (287)
T TIGR02853       149 IHGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSAD-L-ARITEMGL-IPFP----LNKLEEKVAEIDIVINTIP  218 (287)
T ss_pred             CCCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHH-H-HHHHHCCC-eeec----HHHHHHHhccCCEEEECCC
Confidence            34569999999 9999999999988776  89999987521 1 11111111 1111    2356778899999999852


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCcc
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNST  167 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~  167 (356)
                      .+         ++  +    .   +.+....|++++|++ ++|-.+-
T Consensus       219 ~~---------ii--~----~---~~l~~~k~~aliIDlas~Pg~td  247 (287)
T TIGR02853       219 AL---------VL--T----A---DVLSKLPKHAVIIDLASKPGGTD  247 (287)
T ss_pred             hH---------Hh--C----H---HHHhcCCCCeEEEEeCcCCCCCC
Confidence            11         01  1    1   123333468888887 5887754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.08  E-value=0.086  Score=48.03  Aligned_cols=34  Identities=35%  Similarity=0.497  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus        29 ~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   62 (212)
T PRK08644         29 AKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV   62 (212)
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            38999999 9999999999999887 4899999883

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.06  E-value=0.044  Score=50.74  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999998887  899999875

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.06  E-value=0.032  Score=50.78  Aligned_cols=115  Identities=18%  Similarity=0.194  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhh---CCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL---TGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al---~~aDiVIi~  119 (356)
                      .+++.|+||+|.+|..++..|+..+.  +|++++++...  ..++.+......+.. .....+..+++   ...|+||..
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            45899999999999999999998887  89999986511  111211100011111 10011222333   347999999


Q ss_pred             CCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEecC
Q 018433          120 AGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC----PNATVNLISN  162 (356)
Q Consensus       120 ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~tN  162 (356)
                      +|.....   ..+   -...+..|+.....+.+.+.+..    ..+.|+++|.
T Consensus        85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  137 (245)
T PRK07060         85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS  137 (245)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            8864211   111   22344567766666666665432    2356666654

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.06  E-value=0.027  Score=52.21  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .+++.|+||+|.+|..++..|+..|.  ++++.|.+.
T Consensus         9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35799999999999999999999887  899999875

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.058  Score=48.33  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCe-EEE-EeCCCChhhhhC---CCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VRG-FLGQPQLENALT---GMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~-v~~-~~~t~d~~~al~---~aDiVIi  118 (356)
                      +++|.|+||+|.+|+.++..|+.. .  +++++|++...  ..++.+...... +.. .....++.++++   +.|+||.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence            358999999999999999999877 4  89999986511  111211100011 111 000123334444   5899999


Q ss_pred             cCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 018433          119 PAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  162 (356)
Q Consensus       119 ~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  162 (356)
                      ++|......   .+   ....+..|......+.+.+.+..  -...++++|.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss  129 (227)
T PRK08219         78 NAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINS  129 (227)
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            988643111   11   22334565655444444433321  1345555553

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.05  E-value=0.029  Score=54.64  Aligned_cols=64  Identities=27%  Similarity=0.388  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..++|+|||. |.+|..+|..|+. +..-+|+.+|.......    ..     .+.   ..+++++++++||+|++..
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~----~~-----~~~---~~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        145 KDLKVAVIGT-GRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA----AT-----YVD---YKDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCccHhH----Hh-----hcc---ccCCHHHHHHhCCEEEEeC
Confidence            4579999999 9999999999853 33348999997642111    11     111   1246788999999999985

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.05  E-value=0.2  Score=46.14  Aligned_cols=114  Identities=15%  Similarity=0.220  Sum_probs=65.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~a  113 (356)
                      ..+.|+|++|.+|.+++..|+..|.  +|+++|.........++....  ..+..+. .-+|   .++.+       ...
T Consensus        11 k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   86 (253)
T PRK08993         11 KVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGHI   86 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999999887  888888765322223333221  1222111 1122   22222       368


Q ss_pred             cEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433          114 DLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  162 (356)
Q Consensus       114 DiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  162 (356)
                      |++|..+|.... +  ..+   -...+..|......+.+.    +.+..+.+.++++|.
T Consensus        87 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         87 DILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            999999986421 1  111   233455666554444444    433334577777654

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.14  Score=49.64  Aligned_cols=114  Identities=14%  Similarity=0.097  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l  110 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++  +.....++....  ..+..+. .-+|   .+++       +
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            35899999999999999999999887  899999876  233333443221  1222111 1122   2222       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCcH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKP---GMTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ...|++|..+|.....   ..+.   ...+..|    +...+.+.+.+.+. ..+.||+++.
T Consensus        84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~isS  144 (334)
T PRK07109         84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVGS  144 (334)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence            3689999998863211   1111   1223333    34445555555543 3456666654

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.04  E-value=0.053  Score=49.54  Aligned_cols=96  Identities=21%  Similarity=0.296  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      |||+|||. |.+|..+.-.+.... .+.-+.++|.+..+  +..+......+.      .+++.+.+.+.|++|.+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELEASVGRRC------VSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence            69999998 999999988877653 45677888987522  222222211111      1356676799999999986  


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                                    .+.+++++.++-+.+.|.+|+-++--+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          3457899999998888988776654444

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.03  E-value=0.051  Score=52.08  Aligned_cols=80  Identities=16%  Similarity=0.115  Sum_probs=54.8

Q ss_pred             hhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhh
Q 018433           30 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLEN  108 (356)
Q Consensus        30 ~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~  108 (356)
                      .+..+..+........||+|+|+ |.+|..++..|...|.  +|..+|++. ....+.+   ..  ....   ...++.+
T Consensus       138 av~~a~~~~~~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~---~G--~~~~---~~~~l~~  206 (296)
T PRK08306        138 AIMMAIEHTPITIHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITE---MG--LSPF---HLSELAE  206 (296)
T ss_pred             HHHHHHHhCCCCCCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHH---cC--Ceee---cHHHHHH
Confidence            45555544444556789999999 9999999999987775  999999975 2222221   11  1111   1235667


Q ss_pred             hhCCCcEEEEcC
Q 018433          109 ALTGMDLVIIPA  120 (356)
Q Consensus       109 al~~aDiVIi~a  120 (356)
                      .++++|+||.+.
T Consensus       207 ~l~~aDiVI~t~  218 (296)
T PRK08306        207 EVGKIDIIFNTI  218 (296)
T ss_pred             HhCCCCEEEECC
Confidence            889999999985

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.03  E-value=0.035  Score=53.96  Aligned_cols=73  Identities=15%  Similarity=0.240  Sum_probs=50.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .++|+|||+ |..|...+..+.....+.+|.++|++.  ++..+.++.+.. ...+..   ..|+++++++||+||.+..
T Consensus       132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT~  206 (330)
T PRK08291        132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTTP  206 (330)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEeeC
Confidence            458999999 888888777776533467999999876  344444444321 123332   3578899999999988753

>PRK06196 oxidoreductase; Provisional

Probab=96.02  E-value=0.1  Score=49.95  Aligned_cols=113  Identities=18%  Similarity=0.120  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhh-------hCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENA-------LTGM  113 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~a-------l~~a  113 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.+++.  ......++..... ..++..   ..+.+++       +...
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d---~~~v~~~~~~~~~~~~~i  100 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLDLAD---LESVRAFAERFLDSGRRI  100 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC---HHHHHHHHHHHHhcCCCC
Confidence            35899999999999999999999887  899999875  2222222221110 011110   0111111       2468


Q ss_pred             cEEEEcCCCCCCCC----CcHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433          114 DLVIIPAGVPRKPG----MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       114 DiVIi~ag~~~~~g----~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      |++|..+|....+.    ......+..|...    .+.+.+.+.+. ..+.|+++|.
T Consensus       101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS  156 (315)
T PRK06196        101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVALSS  156 (315)
T ss_pred             CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECC
Confidence            99999998642211    1122334555544    55555555543 3466777764

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.02  E-value=0.052  Score=58.42  Aligned_cols=92  Identities=18%  Similarity=0.303  Sum_probs=59.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      .||+|||+ |.+|..++..+...++..+|+.+|.++.. ..+.+   ...  ...   ..+++.+++.++|+||++... 
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~---~g~--~~~---~~~~~~~~~~~aDvVilavp~-   73 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS---LGV--IDR---GEEDLAEAVSGADVIVLAVPV-   73 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH---CCC--CCc---ccCCHHHHhcCCCEEEECCCH-
Confidence            58999999 99999999999988754579999997621 12221   111  111   134667889999999998531 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  161 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  161 (356)
                                     ..+.++.+.+.++. ++.+|+.++
T Consensus        74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         74 ---------------LAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence                           12445555565554 455555443

>PLN03139 formate dehydrogenase; Provisional

Probab=96.01  E-value=0.049  Score=54.11  Aligned_cols=101  Identities=22%  Similarity=0.211  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...++|+|||. |.+|..++..|..-|.  +|+.+|.........  .+.    .+..   ..++++.+++||+|++.. 
T Consensus       197 L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~l-  263 (386)
T PLN03139        197 LEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINT-  263 (386)
T ss_pred             CCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeC-
Confidence            45679999999 9999999999986665  899999864211111  111    1111   246788999999999975 


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  167 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~  167 (356)
                       |..         ..+-.++-  .+.+....|++++||++  ..+|.-
T Consensus       264 -Plt---------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~  299 (386)
T PLN03139        264 -PLT---------EKTRGMFN--KERIAKMKKGVLIVNNARGAIMDTQ  299 (386)
T ss_pred             -CCC---------HHHHHHhC--HHHHhhCCCCeEEEECCCCchhhHH
Confidence             211         11222221  23444445789999986  555543

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.01  E-value=0.0089  Score=55.77  Aligned_cols=121  Identities=18%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC----C-----CcEEEEEeCCC-c-hh------HHHHHhcCCCCCeEEEEeCCCCh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP----L-----VSVLHLYDVVN-T-PG------VTADISHMDTGAVVRGFLGQPQL  106 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~----~-----~~el~L~D~~~-~-~g------~~~dl~~~~~~~~v~~~~~t~d~  106 (356)
                      ..||.|.|| |..|..++..|...+    +     ...++++|..- . .+      .-..+.+..  ..-.   ...|+
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~--~~~~---~~~~L   98 (254)
T cd00762          25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFA--NPER---ESGDL   98 (254)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHc--Cccc---ccCCH
Confidence            469999999 999999998776532    2     24899999875 1 11      011111010  1111   12578


Q ss_pred             hhhhC--CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhCCCC
Q 018433          107 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYD  182 (356)
Q Consensus       107 ~~al~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~--~~t~~~~~~~~~~~~~~  182 (356)
                      .++++  ++|++|=+.+.|   |.           +.+++.+.|.+++++.+|+-.|||..  -.++   +-.++.+.  
T Consensus        99 ~eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t~--  159 (254)
T cd00762          99 EDAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTATE--  159 (254)
T ss_pred             HHHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhcC--
Confidence            99999  999999877655   21           24588889999999999999999997  4443   33344331  


Q ss_pred             CCCEEEe
Q 018433          183 PKKLLGV  189 (356)
Q Consensus       183 ~~kviG~  189 (356)
                      ...+|++
T Consensus       160 G~ai~At  166 (254)
T cd00762         160 GRAIFAS  166 (254)
T ss_pred             CCEEEEE
Confidence            2467777

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.2  Score=48.70  Aligned_cols=114  Identities=18%  Similarity=0.071  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l  110 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++  +.....++....  ..+.... .-+|   .+++       +
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   82 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG   82 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999987  899999876  333333443321  1221110 1122   2222       2


Q ss_pred             CCCcEEEEcCCCCCCC---C---CcHHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKP---G---MTRDDLFNINAGIVRT----LCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g---~~r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tN  162 (356)
                      ...|++|..+|.....   .   ++-...+..|......    ..+.+.+. ..+.+|+++.
T Consensus        83 g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~-~~g~iV~isS  143 (330)
T PRK06139         83 GRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQ-GHGIFINMIS  143 (330)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHc-CCCEEEEEcC
Confidence            4679999999864221   1   1122344555544433    34444433 3466666654

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.01  E-value=0.49  Score=43.66  Aligned_cols=155  Identities=14%  Similarity=0.212  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh---h-------h
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---E-------N  108 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~---~-------~  108 (356)
                      +.++|.|+||++.+|.+++..|+..|.  .|++.+...   +.....++.... ...+..+. .-+|.   +       +
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNSNVEEANKIAEDLEQKY-GIKAKAYPLNILEPETYKELFKKIDE   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999887  788875433   223333443211 11222211 11221   1       1


Q ss_pred             hhCCCcEEEEcCCCCCC-----CC----Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 018433          109 ALTGMDLVIIPAGVPRK-----PG----MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  172 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~-----~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~  172 (356)
                      .+...|++|..+|....     .+    .+   -...+..|+..    .+.+.+.+++. +.+.||++|...+..     
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~-----  157 (260)
T PRK08416         84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKV-GGGSIISLSSTGNLV-----  157 (260)
T ss_pred             hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhcc-CCEEEEEEecccccc-----
Confidence            23468999998874211     01    11   11223334333    34444444432 345677776543321     


Q ss_pred             HHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCccc
Q 018433          173 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  215 (356)
Q Consensus       173 ~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~  215 (356)
                             ..|..-.++.+......+-+.++..++  +..|++.
T Consensus       158 -------~~~~~~~Y~asK~a~~~~~~~la~el~--~~gi~v~  191 (260)
T PRK08416        158 -------YIENYAGHGTSKAAVETMVKYAATELG--EKNIRVN  191 (260)
T ss_pred             -------CCCCcccchhhHHHHHHHHHHHHHHhh--hhCeEEE
Confidence                   112222345555455566677777764  3444433

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.00  E-value=0.025  Score=57.58  Aligned_cols=102  Identities=13%  Similarity=0.174  Sum_probs=59.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC-CCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~-~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      +|+|||. |.+|.++|..|+..|.  +|+++|++..  .+.++.+. .....+.......++.++++++|+||+..-   
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~--~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~---   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPE--KTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK---   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHH--HHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence            4899999 9999999999999998  9999999762  22223321 101112222111223234567998888742   


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC--CCCcc
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN--PVNST  167 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN--Pv~~~  167 (356)
                       +|.           .+.++...+..+- ++.+||..||  |.+..
T Consensus        73 -~~~-----------~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~  106 (467)
T TIGR00873        73 -AGA-----------PVDAVINQLLPLLEKGDIIIDGGNSHYPDTE  106 (467)
T ss_pred             -CcH-----------HHHHHHHHHHhhCCCCCEEEECCCcCHHHHH
Confidence             111           1223334444443 6778888876  44443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.045  Score=51.15  Aligned_cols=34  Identities=15%  Similarity=-0.058  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.|.|+||+|.+|++++..|+..+.  +|++.+.+.
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~   37 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDT   37 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence            4799999999999999999998886  899999875

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.00  E-value=0.018  Score=52.57  Aligned_cols=92  Identities=14%  Similarity=0.134  Sum_probs=57.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe--CCCChhhhhCCCcEEEEcCCCCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |+|+||+|.+|+.++..|+..+.  +|..+=++........+.+..  ..+-...  ....+.++|+|+|.|+++.+...
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g--~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALG--AEVVEADYDDPESLVAALKGVDAVFSVTPPSH   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTT--TEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhccc--ceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence            78999999999999999998765  677766654222333444432  2221111  11346678999999999865332


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCC  152 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~  152 (356)
                         ..+       .+....++++..+.+
T Consensus        77 ---~~~-------~~~~~~li~Aa~~ag   94 (233)
T PF05368_consen   77 ---PSE-------LEQQKNLIDAAKAAG   94 (233)
T ss_dssp             ---CCH-------HHHHHHHHHHHHHHT
T ss_pred             ---hhh-------hhhhhhHHHhhhccc
Confidence               112       233455666666665

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=95.98  E-value=0.33  Score=45.01  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=28.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   79 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~   79 (356)
                      .+.|+||+|.+|.+++..|+..|.  +|++.+.+
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence            689999999999999999999887  88887543

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.98  E-value=0.12  Score=47.42  Aligned_cols=114  Identities=19%  Similarity=0.190  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------l  110 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.  .+....++.+..  ..+..+. .-+|   ..++       +
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34799999999999999999999887  899999876  233333333221  1222211 1122   1122       3


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEec
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLIS  161 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~t  161 (356)
                      ...|++|..+|.....   ..+   -...+..|+.....+.+.    +.+....+.+++++
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            4789999998864211   112   123345555544444444    43333345566654

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.98  E-value=0.09  Score=47.67  Aligned_cols=114  Identities=21%  Similarity=0.259  Sum_probs=63.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhhC------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT------  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al~------  111 (356)
                      ++|.|+||+|.+|..++..|+..+.  ++++. +.+.  .......+...  ...+..... -+|.   .+.++      
T Consensus         6 ~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (247)
T PRK05565          6 KVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEKF   81 (247)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4899999999999999999998887  78887 8865  22222222221  122322211 1222   12222      


Q ss_pred             -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433          112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  162 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  162 (356)
                       ..|+||..+|.....   ..+   -...+..|......+.+.+....   ....++++|.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS  142 (247)
T PRK05565         82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISS  142 (247)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence             789999998864211   111   12345567666555555544332   1234555554

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=95.96  E-value=0.023  Score=53.66  Aligned_cols=94  Identities=13%  Similarity=0.138  Sum_probs=60.6

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcCCCCCC
Q 018433           48 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGVPRK  125 (356)
Q Consensus        48 ~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~~~~  125 (356)
                      .|+||+|++|++++..|+..+.  +++++.... .   .|+.+            ..++.+.++  ++|+||.+|+....
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~-~---~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~   62 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGF--TNLVLRTHK-E---LDLTR------------QADVEAFFAKEKPTYVILAAAKVGG   62 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCC--cEEEeeccc-c---CCCCC------------HHHHHHHHhccCCCEEEEeeeeecc
Confidence            3899999999999999988776  444443221 0   12211            123334444  57999999875321


Q ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 018433          126 ---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  160 (356)
Q Consensus       126 ---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  160 (356)
                         ......+.+..|......+++.+++.... .+|.+
T Consensus        63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~   99 (306)
T PLN02725         63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFL   99 (306)
T ss_pred             cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEe
Confidence               12234566789999999999999987543 34444

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=95.95  E-value=0.034  Score=53.96  Aligned_cols=71  Identities=15%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..+++|||+ |..|...+..+.......+|.++|++.  ++..+.++.+.  ...+..   ..|.++++++||+|+.+.
T Consensus       128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence            458999999 999988776665545578999999987  34444445432  223443   257789999999999864

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.95  E-value=0.11  Score=47.40  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=62.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-C---CCChhhhh-------CC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-G---QPQLENAL-------TG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~---t~d~~~al-------~~  112 (356)
                      .+++.|+||+|.+|+.++..|+..|.  +++++|.+..       ....  ..+..+. .   ..+..+.+       ..
T Consensus         8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~~-------~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (252)
T PRK08220          8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAFL-------TQED--YPFATFVLDVSDAAAVAQVCQRLLAETGP   76 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecchh-------hhcC--CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999998887  8999998641       1000  1111110 0   11222222       34


Q ss_pred             CcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          113 MDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       113 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      .|+||..+|.....   ..+   -...+..|......+.+.+..+   ...+.++++|.
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss  135 (252)
T PRK08220         77 LDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGS  135 (252)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            79999998864211   111   2234566666555555554332   23455666654

>PRK12743 oxidoreductase; Provisional

Probab=95.94  E-value=0.43  Score=43.88  Aligned_cols=115  Identities=14%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------h
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l  110 (356)
                      .+|.|+||+|.+|..++..|+..|.  +|++++...   ......++....  ..+..+. .-+|.   +.+       +
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3799999999999999999999887  888876533   222223333221  1222211 11222   111       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNP  163 (356)
                      ...|+||..+|.....   ..+   -...+..|......+.+.+..    ....+.|+++|.-
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~  141 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSV  141 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeec
Confidence            3579999998864321   111   223455666555555544433    2234677777653

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.93  E-value=0.036  Score=45.99  Aligned_cols=72  Identities=24%  Similarity=0.308  Sum_probs=45.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhH-HHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV-TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~-~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|+|++|.+|+.++..+...+-..=+..+|.+.  ..|. .-++.... ...+..   ++|+++.+..+|+||-..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v---~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPV---TDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBE---BS-HHHHTTH-SEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-Cccccc---chhHHHhcccCCEEEEcC
Confidence            699999999999999999998854332345667665  2221 12222222 122332   368889999999988763

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.93  E-value=0.054  Score=53.29  Aligned_cols=60  Identities=23%  Similarity=0.337  Sum_probs=44.0

Q ss_pred             HHhHHHHHhccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433            8 NQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |....|.+-|++=|.+-.|.+     ++-++.      ||+|+|+ |.+|+.++..|+..|+. +|.|+|.+.
T Consensus         3 ~~~~~rY~Rq~~l~~~g~~~q-----~~L~~~------~VlivG~-GGlGs~~a~~La~~Gvg-~i~lvD~D~   62 (355)
T PRK05597          3 NLDIARYRRQIMLGEIGQQGQ-----QSLFDA------KVAVIGA-GGLGSPALLYLAGAGVG-HITIIDDDT   62 (355)
T ss_pred             hHHHhHhhheechhhcCHHHH-----HHHhCC------eEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCE
Confidence            445556666666555554443     333444      9999999 99999999999988864 899999875

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.93  E-value=0.12  Score=46.72  Aligned_cols=108  Identities=19%  Similarity=0.168  Sum_probs=62.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCC----hhhhhCCCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENALTGMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d----~~~al~~aDiVIi  118 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +++++|++....    .   .  ..+..... -+|    ..+.+...|+||.
T Consensus         5 ~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~---~--~~~~~~~~D~~~~~~~~~~~~~~id~lv~   73 (235)
T PRK06550          5 TKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----L---S--GNFHFLQLDLSDDLEPLFDWVPSVDILCN   73 (235)
T ss_pred             CCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----c---C--CcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence            35899999999999999999998887  899999875210    0   0  11111110 011    1123457899999


Q ss_pred             cCCCCC--CC--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          119 PAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       119 ~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      .+|...  .+  ..+   -...+..|......+.+.+...   ...+.+++++.
T Consensus        74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  127 (235)
T PRK06550         74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCS  127 (235)
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            988532  11  111   1234556665555555544332   23456666553

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=95.93  E-value=0.04  Score=52.25  Aligned_cols=146  Identities=24%  Similarity=0.281  Sum_probs=88.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  122 (356)
                      |||.|+|++|++|+.+...|. .+.  +++-.|..+     +|+.+..            ...+.++  .-|+||.+|.+
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            679999999999999988887 434  777777654     4444322            1223344  56999999987


Q ss_pred             CCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC--CccHHHHHHHHHHhCCCCCCCEEEechhhHHHH
Q 018433          123 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV--NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  197 (356)
Q Consensus       123 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv--~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~  197 (356)
                      ..-  ...++..-+.-|......+++...++  .+++|-+| --|  +.-.    .-.++.---.|..++|-+.+....+
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~--ga~lVhiSTDyVFDG~~~----~~Y~E~D~~~P~nvYG~sKl~GE~~  134 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEV--GARLVHISTDYVFDGEKG----GPYKETDTPNPLNVYGRSKLAGEEA  134 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHh--CCeEEEeecceEecCCCC----CCCCCCCCCCChhhhhHHHHHHHHH
Confidence            542  23446666789999999999999887  45555554 222  1100    0000000122556777765443321


Q ss_pred             HHHHHHHhCCCCCCC---cccEEecccC
Q 018433          198 NTFVAEVLGLDPRDV---DVPVVGGHAG  222 (356)
Q Consensus       198 ~~~la~~l~v~~~~v---~~~viG~hg~  222 (356)
                          .+..+  +..+   ..+++|++|.
T Consensus       135 ----v~~~~--~~~~I~Rtswv~g~~g~  156 (281)
T COG1091         135 ----VRAAG--PRHLILRTSWVYGEYGN  156 (281)
T ss_pred             ----HHHhC--CCEEEEEeeeeecCCCC
Confidence                22222  3333   5889999886

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.1  Score=47.42  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh---hhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~---~al-------  110 (356)
                      ++++.|+|++|.+|..++..|+.+|.  +|+++|++.  ......++....  ..+..+. .-+|++   .++       
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF   81 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999887  899999875  222222232211  1222111 112321   222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP  163 (356)
                      ...|+||..+|.....   ..+   -...+..|+.....    +.+.+.+. ..+.++++|..
T Consensus        82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  143 (241)
T PRK07454         82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR-GGGLIINVSSI  143 (241)
T ss_pred             CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCcEEEEEccH
Confidence            3589999999864321   111   12334555554444    33444433 24566666543

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.92  E-value=0.035  Score=54.22  Aligned_cols=74  Identities=19%  Similarity=0.272  Sum_probs=49.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----c----------------hhH--HHHHhcCCCCCeEEEEe
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T----------------PGV--TADISHMDTGAVVRGFL  101 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----~----------------~g~--~~dl~~~~~~~~v~~~~  101 (356)
                      .||+|||+ |.+|+.++..|+..|+ .+|.|+|.+.     +                +..  +..+........+..+.
T Consensus        25 ~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~  102 (338)
T PRK12475         25 KHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV  102 (338)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence            38999999 9999999999999886 4999999874     1                001  11222222223343332


Q ss_pred             C---CCChhhhhCCCcEEEEcC
Q 018433          102 G---QPQLENALTGMDLVIIPA  120 (356)
Q Consensus       102 ~---t~d~~~al~~aDiVIi~a  120 (356)
                      .   ..+.++.++++|+||.+.
T Consensus       103 ~~~~~~~~~~~~~~~DlVid~~  124 (338)
T PRK12475        103 TDVTVEELEELVKEVDLIIDAT  124 (338)
T ss_pred             ccCCHHHHHHHhcCCCEEEEcC
Confidence            1   134566789999999985

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.92  E-value=0.2  Score=45.68  Aligned_cols=115  Identities=15%  Similarity=0.132  Sum_probs=60.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~a-------  109 (356)
                      ..+|.|+||+|.+|++++..|+..+.  ++++...+.   ......++....  ..+..+. .-++   ...+       
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAKKRAEEMNETLKMVKENG--GEGIGVLADVSTREGCETLAKATIDR   81 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHcC--CeeEEEEeccCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998887  666654332   112222222111  1111110 0111   1112       


Q ss_pred             hCCCcEEEEcCCCCCCC---CCcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          110 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                      +...|+||.++|.....   +.+.   .+.+..|......+++.+.++- ..+.++++|.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (252)
T PRK06077         82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIAS  141 (252)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcc
Confidence            34679999999863211   1122   2334555555445555444432 2456666654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.91  E-value=0.066  Score=52.97  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .||+|+|+ |.+|+.++..|+..|. .+|+++|.+.
T Consensus        42 ~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~   75 (370)
T PRK05600         42 ARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT   75 (370)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            48999999 9999999999998886 4999999874

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.89  E-value=0.052  Score=47.88  Aligned_cols=94  Identities=26%  Similarity=0.320  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ....+|+|+|. |.+|..+|..+..-|.  +|+.+|.......  ...+.    .+..    .++++.++.||+|++..-
T Consensus        34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l~ell~~aDiv~~~~p  100 (178)
T PF02826_consen   34 LRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSLDELLAQADIVSLHLP  100 (178)
T ss_dssp             STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSHHHHHHH-SEEEE-SS
T ss_pred             cCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eehhhhcchhhhhhhhhc
Confidence            34569999999 9999999999986666  9999999762211  11111    1221    367889999999999753


Q ss_pred             -CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          122 -VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       122 -~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                       .+...++-..              +.+.+..|++++||++-
T Consensus       101 lt~~T~~li~~--------------~~l~~mk~ga~lvN~aR  128 (178)
T PF02826_consen  101 LTPETRGLINA--------------EFLAKMKPGAVLVNVAR  128 (178)
T ss_dssp             SSTTTTTSBSH--------------HHHHTSTTTEEEEESSS
T ss_pred             cccccceeeee--------------eeeeccccceEEEeccc
Confidence             2322233111              12233346889999874

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.87  E-value=0.04  Score=53.45  Aligned_cols=73  Identities=10%  Similarity=0.161  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ..+++|||+ |..|...+..++....+.+|.++|++.  ....+.++.+. ....+..+   .|+++++++||+||.+..
T Consensus       127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~aDiVi~aT~  201 (325)
T PRK08618        127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYVV---NSADEAIEEADIIVTVTN  201 (325)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEccC
Confidence            458999999 999987776665444457999999986  33444444332 12233332   577889999999998753

>PRK08177 short chain dehydrogenase; Provisional

Probab=95.86  E-value=0.13  Score=46.49  Aligned_cols=34  Identities=18%  Similarity=0.073  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +++.|+||+|.+|+.++..|+..|.  +|+++|++.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4799999999999999999998887  999999876

>PRK07023 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.028  Score=51.38  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +|+|.|+||+|.+|..++..|+..|.  ++++++++.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            46899999999999999999998887  899999865

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=95.85  E-value=0.29  Score=44.59  Aligned_cols=32  Identities=28%  Similarity=0.303  Sum_probs=27.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   78 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~   78 (356)
                      ++|.|+||+|.+|+.++..|+..+.  ++++.+.
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            4799999999999999999998886  7777654

>PRK05693 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.16  Score=47.32  Aligned_cols=34  Identities=26%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +++.|+||+|.+|..++..|+..|.  +|++.+++.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999998887  899999875

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.82  E-value=0.061  Score=50.64  Aligned_cols=69  Identities=19%  Similarity=0.319  Sum_probs=44.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      +|||+|||. |.+|..++..+...+ ...-+.++|.+..  .+.++.+. ..  ...+   +|+++.+.++|+|++++.
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~--~a~~~a~~-~~--~~~~---~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLE--KAENLASK-TG--AKAC---LSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHH--HHHHHHHh-cC--CeeE---CCHHHHhcCCCEEEEcCC
Confidence            379999998 999999998887654 2223567888651  12222221 11  1222   467676799999999863

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.79  E-value=0.03  Score=54.07  Aligned_cols=70  Identities=16%  Similarity=0.233  Sum_probs=47.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..++|||+ |..+..-+..++.--.+.+|.++|++.  ++..+.++.+ . ...+...   .|.++|+++||+|+.+.
T Consensus       129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred             ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence            48999999 988887777665533378999999987  5566677777 2 3455543   57889999999999854

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.086  Score=49.39  Aligned_cols=112  Identities=12%  Similarity=0.055  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhh--------CCCcE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL--------TGMDL  115 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al--------~~aDi  115 (356)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+++....  .++..... ..+.. .....+.++++        ...|+
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEGL-EAFQLDYAEPESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCCc-eEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence            4799999999999999999998887  899999875111  12222110 11111 00011121222        24699


Q ss_pred             EEEcCCCCCCC---CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433          116 VIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       116 VIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ||..+|.....   ..+   -...+..|...    .+.+.+.+++.. .+.|+++|.
T Consensus        80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS  135 (277)
T PRK05993         80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS  135 (277)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence            99998864321   111   23345666655    555666665543 456666654

>PRK05599 hypothetical protein; Provisional

Probab=95.77  E-value=0.63  Score=42.71  Aligned_cols=153  Identities=13%  Similarity=0.144  Sum_probs=81.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---h-------hhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---L-------ENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~al~  111 (356)
                      |.+.|+||++.+|..++..|+ ++.  .|++.+++.  ++..+.++..... ..+..+.. -+|   .       .+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            458899999999999999998 454  899999876  3444445543211 11111110 011   1       12234


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      .-|++|..+|......   .+   ..+....|.    ...+.+.+.+.+...++.|+++|.-....            +.
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~  144 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR------------AR  144 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc------------CC
Confidence            6899999988642211   11   112222333    33344556565544457788877654322            12


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCccc
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  215 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~  215 (356)
                      |..-.++.+.-....+-+.++..++  +..|++.
T Consensus       145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~  176 (246)
T PRK05599        145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLI  176 (246)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEE
Confidence            2223345544334456666777663  3445433

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.76  E-value=0.095  Score=52.26  Aligned_cols=33  Identities=24%  Similarity=0.513  Sum_probs=30.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||.|||+ |.+|+.++..|+..|+. +|.|+|-+.
T Consensus        44 ~VlviG~-GGlGs~va~~La~~Gvg-~i~lvD~D~   76 (392)
T PRK07878         44 RVLVIGA-GGLGSPTLLYLAAAGVG-TLGIVEFDV   76 (392)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCC-eEEEECCCE
Confidence            8999999 99999999999998864 899999874

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=95.76  E-value=0.066  Score=51.79  Aligned_cols=65  Identities=20%  Similarity=0.198  Sum_probs=43.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .+||+|||+ |++|.+++..|...+.  +++..+....... ..+....    +..    .+..+++++||+|+++.
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~----~s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV----GTVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE----CCHHHHHhcCCEEEEeC
Confidence            469999999 9999999999998886  6666554331111 1111111    121    23567889999999985

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=95.75  E-value=0.096  Score=50.52  Aligned_cols=66  Identities=14%  Similarity=0.169  Sum_probs=45.2

Q ss_pred             CeEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe
Q 018433           45 FKVAILGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL  101 (356)
Q Consensus        45 ~KI~IIGa~G~--------------------vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~  101 (356)
                      |||+|-|| |+                    -|+.+|..|+..|+  +|+++|++..   ......+.+...    ..  
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~--   71 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV--   71 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee--
Confidence            68888888 64                    36788888888888  9999998751   122333444321    11  


Q ss_pred             CCCChhhhhCCCcEEEEcC
Q 018433          102 GQPQLENALTGMDLVIIPA  120 (356)
Q Consensus       102 ~t~d~~~al~~aDiVIi~a  120 (356)
                       .++..++.++||+||+.-
T Consensus        72 -AaS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        72 -VSDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             -cCCHHHHHhCCCEEEEec
Confidence             235678999999999984

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=95.75  E-value=0.23  Score=45.00  Aligned_cols=115  Identities=20%  Similarity=0.147  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC--CCCCeEEEEeC-CCC---hhhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTGAVVRGFLG-QPQ---LENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~--~~~~~v~~~~~-t~d---~~~al-------~  111 (356)
                      .+|.|+|++|.+|++++..|+..|.  .+++.|++.. ....++...  .....+..+.. -+|   ..+++       .
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   79 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG   79 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3789999999999999999998886  8999998742 111111110  01122222211 122   11222       3


Q ss_pred             CCcEEEEcCCCCCC---CCCc---HHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRK---PGMT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~---~g~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP  163 (356)
                      ..|++|..+|....   ...+   -...+..|+.....+.    +.+++. +.+.++++|..
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~  140 (245)
T PRK12824         80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV  140 (245)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECCh
Confidence            58999999886421   1111   2233456665555543    444433 45577777654

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=95.75  E-value=0.13  Score=46.68  Aligned_cols=114  Identities=14%  Similarity=0.144  Sum_probs=63.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------hCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------LTG  112 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l~~  112 (356)
                      |.|+||+|.+|.+++..|+..|.  ++++++...   ......++.+..  .++..+.. -+|.   +++       +..
T Consensus         1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57999999999999999999887  788887643   222223333321  12222211 1121   122       234


Q ss_pred             CcEEEEcCCCCCCC---CC---cHHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 018433          113 MDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPV  164 (356)
Q Consensus       113 aDiVIi~ag~~~~~---g~---~r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNPv  164 (356)
                      .|.+|..+|.....   ..   +....+..|......+.+.+    .+..+.+.++++|...
T Consensus        77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~  138 (239)
T TIGR01831        77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS  138 (239)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence            58899988864321   11   22345566666555554433    2223456777776654

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PLN02928 oxidoreductase family protein

Probab=95.75  E-value=0.046  Score=53.61  Aligned_cols=103  Identities=23%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHH--hcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl--~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..++|+|||. |.+|..+|..|..-|.  +|+.+|..........+  ................++++.++.||+|++..
T Consensus       158 ~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        158 FGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            4579999999 9999999999886665  99999985311111111  00000000000001246889999999999975


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      -  ..+         .|-.++-  .+.+.+.-|++++||++
T Consensus       235 P--lt~---------~T~~li~--~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        235 T--LTK---------ETAGIVN--DEFLSSMKKGALLVNIA  262 (347)
T ss_pred             C--CCh---------HhhcccC--HHHHhcCCCCeEEEECC
Confidence            2  211         1111111  23344445789999997

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.75  E-value=0.18  Score=46.68  Aligned_cols=116  Identities=14%  Similarity=0.130  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEe----CCCChhhhh----
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL----GQPQLENAL----  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~----~t~d~~~al----  110 (356)
                      ++++|.|+||+|.+|.+++..|+..+ .  .|++++++..   .....++.... ...+..+.    ...+.++.+    
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence            34589999999999999999998874 5  8899998752   22233443321 11222211    011211112    


Q ss_pred             --CCCcEEEEcCCCCCCCCC---cH---HHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 018433          111 --TGMDLVIIPAGVPRKPGM---TR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       111 --~~aDiVIi~ag~~~~~g~---~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  162 (356)
                        .+.|++|..+|.......   +-   .+.+..|....    +.+.+.+.+.. .+.|+++|.
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~-~~~iv~isS  146 (253)
T PRK07904         84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG-FGQIIAMSS  146 (253)
T ss_pred             hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC-CceEEEEec
Confidence              379999998876432111   11   12356666433    44566665544 355666654

>PRK09134 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.12  Score=47.55  Aligned_cols=113  Identities=15%  Similarity=0.160  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  110 (356)
                      +++.|+||+|.+|.+++..|+..+.  .+++.+...   .......+.+..  ..+..+. .-+|   ..+++       
T Consensus        10 k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~~   85 (258)
T PRK09134         10 RAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAAL   85 (258)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4899999999999999999998886  777776643   222222232211  2222221 1122   22223       


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhCC---CcEEEEec
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCP---NATVNLIS  161 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p---~a~viv~t  161 (356)
                      ...|+||..+|.....   ..+   -...+..|+.....+.+.+..+.+   .+.+++++
T Consensus        86 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~  145 (258)
T PRK09134         86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMI  145 (258)
T ss_pred             CCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEEC
Confidence            3469999999863221   112   234456777666666666555432   34555543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.72  E-value=0.14  Score=46.19  Aligned_cols=72  Identities=15%  Similarity=0.118  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      .+||.|||+ |.+|...+..|...+.  +|++++.+.... ..++.+..   .+......-+ ++.+.++|+||.+.+.+
T Consensus        10 ~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~~-l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~d~   81 (202)
T PRK06718         10 NKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTEN-LVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATNDP   81 (202)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCHH-HHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCCCH
Confidence            459999999 9999999999998885  899998643222 22333321   1222211112 35689999998875543

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.71  E-value=0.31  Score=46.53  Aligned_cols=100  Identities=25%  Similarity=0.343  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhh------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENA------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a------l  110 (356)
                      .+++.|+||+|.+|..++..|+..|.  ++++.|...   ....+.++...  ...+..+.. -+|   .++.      +
T Consensus        12 ~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~~~~~   87 (306)
T PRK07792         12 GKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVATAVGL   87 (306)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999887  899999754   22233334322  122222211 112   1111      2


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHH
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG  147 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~  147 (356)
                      ...|++|..+|.....   ..+   ....+..|+.....+.+.
T Consensus        88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~  130 (306)
T PRK07792         88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRN  130 (306)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHH
Confidence            3589999999875432   122   223445565544444443

>PLN00016 RNA-binding protein; Provisional

Probab=95.70  E-value=0.07  Score=52.60  Aligned_cols=36  Identities=25%  Similarity=0.140  Sum_probs=32.3

Q ss_pred             CCCeEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAIL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~II----Ga~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .++||.|+    ||+|++|++++..|+..|+  +|+.++++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~   90 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK   90 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence            34689999    9999999999999999887  999999875

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.69  E-value=0.047  Score=52.49  Aligned_cols=73  Identities=16%  Similarity=0.075  Sum_probs=52.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...++|||+ |..|..-+..++.-..+.+|.++|++.  +...+.++.+.. ...+...   .+.++++++||+|+.+..
T Consensus       117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT~  191 (301)
T PRK06407        117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSITN  191 (301)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEecC
Confidence            459999999 988887777666555678999999987  455555555421 2344443   467899999999998643

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.67  E-value=0.053  Score=52.15  Aligned_cols=71  Identities=13%  Similarity=0.113  Sum_probs=50.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ..+|+|+|+ |..|...+..++......++.++|++.  +...+.++.+.  ...+.    ..+.++++.+||+||.+..
T Consensus       125 ~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVitaT~  197 (304)
T PRK07340        125 PGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTATT  197 (304)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEccC
Confidence            459999999 999999988887533346999999986  34445455432  12222    1467789999999999754

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.66  E-value=0.0084  Score=59.32  Aligned_cols=71  Identities=25%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEe-CCC---ChhhhhCCCcEEEEcC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQP---QLENALTGMDLVIIPA  120 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al~~aDiVIi~a  120 (356)
                      |.|+|+ |.+|+.++..|+......++++.|++..  +..+..+ .   ...+.... .-.   ++.+.++++|+||.++
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~---~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-L---GDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---T---TTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-c---ccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            789999 9999999999998876669999999862  2222222 1   11222211 112   3556789999999998


Q ss_pred             CC
Q 018433          121 GV  122 (356)
Q Consensus       121 g~  122 (356)
                      |.
T Consensus        76 gp   77 (386)
T PF03435_consen   76 GP   77 (386)
T ss_dssp             SG
T ss_pred             cc
Confidence            64

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.65  E-value=0.047  Score=54.01  Aligned_cols=82  Identities=18%  Similarity=0.217  Sum_probs=54.8

Q ss_pred             hhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCc
Q 018433           36 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMD  114 (356)
Q Consensus        36 ~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aD  114 (356)
                      .+..++.++.||+|+|+ |.+|...+..+...|.  +|..+|++....  ..+.... ...+.. .....++.+.++++|
T Consensus       159 ~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aD  232 (370)
T TIGR00518       159 LGGVPGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRAD  232 (370)
T ss_pred             ecCCCCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCC
Confidence            45666678889999999 9999999999988776  799999875211  1121111 111211 111134667889999


Q ss_pred             EEEEcCCCC
Q 018433          115 LVIIPAGVP  123 (356)
Q Consensus       115 iVIi~ag~~  123 (356)
                      +||.+.+.|
T Consensus       233 vVI~a~~~~  241 (370)
T TIGR00518       233 LLIGAVLIP  241 (370)
T ss_pred             EEEEccccC
Confidence            999987654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.63  E-value=0.24  Score=46.19  Aligned_cols=156  Identities=13%  Similarity=0.169  Sum_probs=81.1

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hhh-------h
Q 018433           44 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------A  109 (356)
Q Consensus        44 ~~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~-------a  109 (356)
                      .+.+.|+||++  -+|..++..|+..|.  .|++.|.+. ....+.++.....  ....+. .-+|   .++       .
T Consensus         6 ~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~   81 (262)
T PRK07984          6 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLG--SDIVLPCDVAEDASIDAMFAELGKV   81 (262)
T ss_pred             CCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecchhHHHHHHHHHhccC--CceEeecCCCCHHHHHHHHHHHHhh
Confidence            45789999953  699999999999887  889998764 2233334432211  111110 0112   211       1


Q ss_pred             hCCCcEEEEcCCCCCCC--------CCcHH---HHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHH
Q 018433          110 LTGMDLVIIPAGVPRKP--------GMTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~--------g~~r~---~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~  177 (356)
                      +-..|++|..+|.....        ..+..   ..+..|......+.+.+... .+++.|+++|.-....          
T Consensus        82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~----------  151 (262)
T PRK07984         82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------  151 (262)
T ss_pred             cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC----------
Confidence            23479999999863211        11222   22344554333334333222 2457777776433211          


Q ss_pred             hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          178 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       178 ~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                        +.|..-.++.+......+-+.+|..++  +..|++..+
T Consensus       152 --~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~i  187 (262)
T PRK07984        152 --AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  187 (262)
T ss_pred             --CCCCcchhHHHHHHHHHHHHHHHHHhc--ccCcEEeee
Confidence              122223345544444556677777763  455655444

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.43  Score=43.72  Aligned_cols=114  Identities=11%  Similarity=0.097  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhh-------hC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~a-------l~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  .|++.|.+.  ......++....  ..+..+.. -+|   .+++       +.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999998887  899999876  233333333221  12222211 122   1121       24


Q ss_pred             CCcEEEEcCCCCCC-C--CCcH---HHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tN  162 (356)
                      ..|+||..+|.... +  ..+.   ...+..|......+.+.+.    +....+.++++|.
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  138 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVA  138 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcC
Confidence            67999998875321 1  2222   2345566655455555543    3334567777763

>PRK07201 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.21  Score=52.73  Aligned_cols=116  Identities=17%  Similarity=0.189  Sum_probs=67.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC----
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT----  111 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~----  111 (356)
                      .+.+++.|+||+|.+|..++..|+..|.  +|+++++++  +.....++....  ..+..+. .-+|   .+++++    
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~  444 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILA  444 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999887  899999876  222333333221  1222211 1122   223333    


Q ss_pred             ---CCcEEEEcCCCCCCCC--------CcHHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433          112 ---GMDLVIIPAGVPRKPG--------MTRDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  162 (356)
Q Consensus       112 ---~aDiVIi~ag~~~~~g--------~~r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  162 (356)
                         ..|++|..+|......        .+-...+..|......+...    +++. ..+.|+++|.
T Consensus       445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  509 (657)
T PRK07201        445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS  509 (657)
T ss_pred             hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence               6899999998642111        11223345666554444444    4333 3456777654

>PLN02712 arogenate dehydrogenase

Probab=95.62  E-value=0.072  Score=56.73  Aligned_cols=66  Identities=20%  Similarity=0.280  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC-CCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~a  120 (356)
                      .++|||+|||. |.+|..++..|...|.  +|+.+|.+.....+.+   .  .  +..   .+++++.+. ++|+||++.
T Consensus       367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~---~--G--v~~---~~~~~el~~~~aDvVILav  433 (667)
T PLN02712        367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQK---L--G--VSY---FSDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHH---c--C--CeE---eCCHHHHHhcCCCEEEECC
Confidence            35689999998 9999999999988776  8999998742111111   1  1  122   245656565 599999984

>PRK08223 hypothetical protein; Validated

Probab=95.62  E-value=0.064  Score=51.09  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||.|||+ |-+|+.++..|+..|+. +|.|+|-+.
T Consensus        29 ~VlIvG~-GGLGs~va~~LA~aGVG-~i~lvD~D~   61 (287)
T PRK08223         29 RVAIAGL-GGVGGIHLLTLARLGIG-KFTIADFDV   61 (287)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            8999999 99999999999999874 999999875

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.61  E-value=0.1  Score=47.30  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .+|.|+||+|.+|+.++..|+..|.  +|++++.++
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4899999999999999999998888  899999876

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.15  Score=46.03  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .++|.|+||+|.+|..++..|+..|.  ++++++++.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35899999999999999999998887  899999875

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.60  E-value=0.078  Score=52.50  Aligned_cols=32  Identities=31%  Similarity=0.624  Sum_probs=29.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   79 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~   79 (356)
                      ||+|+|+ |-+|+.++..|+..|. .+|+|+|.+
T Consensus       137 ~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        137 RVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             cEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            8999999 9999999999999886 489999987

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.29  Score=46.41  Aligned_cols=114  Identities=22%  Similarity=0.250  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE-eCCCCh---hh-------hh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQL---EN-------AL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~-~~t~d~---~~-------al  110 (356)
                      ..++.|+||+|.+|..++..|+..|.  +|++.+++.  +.....++..   ...+..+ ..-+|.   ++       .+
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999887  899999876  2333333321   1111111 111232   11       12


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  162 (356)
                      ...|+||..+|.....   ..+   -...+..|......+++.+..+-  ..+.|+++|.
T Consensus        84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS  143 (296)
T PRK05872         84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS  143 (296)
T ss_pred             CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            4679999999864211   111   22345566665555555544321  3466766654

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.59  E-value=0.04  Score=52.13  Aligned_cols=71  Identities=24%  Similarity=0.213  Sum_probs=46.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEE-EEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      ++++||+|||. |.+|..++..|... +-. +++ ++|.+...  +.++.... . ....   .+++++.+.++|+|+++
T Consensus         4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~~-el~aV~dr~~~~--a~~~a~~~-g-~~~~---~~~~eell~~~D~Vvi~   74 (271)
T PRK13302          4 RPELRVAIAGL-GAIGKAIAQALDRGLPGL-TLSAVAVRDPQR--HADFIWGL-R-RPPP---VVPLDQLATHADIVVEA   74 (271)
T ss_pred             CCeeEEEEECc-cHHHHHHHHHHHhcCCCe-EEEEEECCCHHH--HHHHHHhc-C-CCcc---cCCHHHHhcCCCEEEEC
Confidence            45689999999 99999999888764 222 655 78876521  22222211 0 0111   24677778999999998


Q ss_pred             CC
Q 018433          120 AG  121 (356)
Q Consensus       120 ag  121 (356)
                      +.
T Consensus        75 tp   76 (271)
T PRK13302         75 AP   76 (271)
T ss_pred             CC
Confidence            64

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.57  E-value=0.08  Score=49.18  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=30.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|+|+ |.+|+.++..|+..|. .+|+|+|.+.
T Consensus        26 ~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        26 RVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            8999999 9999999999999885 4999999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.4  Score=44.23  Aligned_cols=117  Identities=15%  Similarity=0.168  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh----------hhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~----------~al  110 (356)
                      ...+.|+||+|.+|..++..|+..|.  +|++.+++.  +.....++........+..+. .-+|.+          +.+
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            34799999999999999999998887  899999876  233333333221111222211 112321          123


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      ...|++|..+|.....   ..+   ....+..|    ....+.+.+.+++. ..+.|+++|.-
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~  147 (265)
T PRK07062         86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS-AAASIVCVNSL  147 (265)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCcEEEEeccc
Confidence            4579999999864211   111   11223333    33445555555543 34567766543

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.57  E-value=0.1  Score=51.09  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=30.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||.|+|+ |.+|+.++..|+..|+ .+|.|+|.+.
T Consensus        26 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         26 HVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             cEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            9999999 9999999999999886 4999999874

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.57  E-value=0.056  Score=50.77  Aligned_cols=33  Identities=12%  Similarity=0.255  Sum_probs=29.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||.|+||+|++|++++..|+..+.  +|..+.++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~   33 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS   33 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            589999999999999999998887  888888875

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.56  E-value=0.57  Score=43.87  Aligned_cols=68  Identities=25%  Similarity=0.245  Sum_probs=43.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +|||+|+|+.|.+|..++..+...+-..-+.++|.+.......    .  ...+..   ++|+++.++++|+||...
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----~--~~~i~~---~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----G--ALGVAI---TDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----C--CCCccc---cCCHHHhccCCCEEEECC
Confidence            4799999988999999998777654333334588765111111    1  112221   367878888999999664

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.55  E-value=0.067  Score=51.65  Aligned_cols=72  Identities=14%  Similarity=0.213  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ..+|+|||+ |.+|...+..++....+.+|.++|++.  ....+.++.+.  ...+...   .+.++++++||+|+.+..
T Consensus       125 ~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~aT~  198 (314)
T PRK06141        125 ASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCATL  198 (314)
T ss_pred             CceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEeeC
Confidence            458999999 999999987666533356999999976  34445555432  1223332   466789999999976543

>PRK08324 short chain dehydrogenase; Validated

Probab=95.54  E-value=0.11  Score=55.37  Aligned_cols=115  Identities=21%  Similarity=0.270  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  110 (356)
                      +.++|.|+||+|.+|+.++..|+..|.  +|+++|++.  +.....++...   ..+..+. .-+|   ..+++      
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~  495 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA  495 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998887  899999976  22222223221   1111111 1122   22223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CcH---HHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecC
Q 018433          111 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  162 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tN  162 (356)
                       .+.|+||.++|......   .+.   ...+..|......+    .+.+++....+.|++++.
T Consensus       496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence             36899999998643211   111   12344555444444    444444333466666654

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.54  E-value=0.17  Score=46.55  Aligned_cols=115  Identities=19%  Similarity=0.236  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  110 (356)
                      +.+.|+||+|.+|++++..|+..|.  ++++.|.+.   ......++.+..  ..+..+. .-+|   .++++       
T Consensus         9 k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   84 (254)
T PRK06114          9 QVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAEL   84 (254)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4899999999999999999999887  899999865   222233343321  1121111 1112   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                      ..-|++|..+|......   .+   -...+..|+.....+.+.+...   ...+.++++|.-
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  146 (254)
T PRK06114         85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASM  146 (254)
T ss_pred             CCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECch
Confidence            33599999998643211   11   1233455655544444433322   234566666543

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.53  E-value=0.071  Score=51.76  Aligned_cols=73  Identities=16%  Similarity=0.232  Sum_probs=51.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ..+++|||+ |..|...+..|+....+.+|.+++++.  ++..+.++.+.. ...+..   ..++++++.+||+||.+..
T Consensus       129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT~  203 (326)
T TIGR02992       129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTTP  203 (326)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEecC
Confidence            358999999 999988888776434457999999986  444455554321 122332   2577889999999999753

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06123 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.59  Score=42.44  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=63.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe----CCCChhhhh-------C
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL----GQPQLENAL-------T  111 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al-------~  111 (356)
                      .+.|+||+|.+|++++..|+..|.  .+++.+.+.   ......++....  ..+..+.    ...++++++       .
T Consensus         4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06123          4 VMIITGASRGIGAATALLAAERGY--AVCLNYLRNRDAAEAVVQAIRRQG--GEALAVAADVADEADVLRLFEAVDRELG   79 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC--eEEEecCCCHHHHHHHHHHHHhCC--CcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence            589999999999999999998886  778877543   122222232211  1111110    011222233       2


Q ss_pred             CCcEEEEcCCCCCCC----CCcH---HHHHHHHHHHHHHHHHHHHHh----C--CCcEEEEecCCC
Q 018433          112 GMDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKC----C--PNATVNLISNPV  164 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~----~--p~a~viv~tNPv  164 (356)
                      ..|+||.++|.....    ..+.   ...+..|+.....+.+...++    .  .++.++++|...
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~  145 (248)
T PRK06123         80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMA  145 (248)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchh
Confidence            679999999864321    1121   234566666554444443332    1  135677766654

>PRK07775 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.45  Score=44.44  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.+.+.
T Consensus        11 ~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~   44 (274)
T PRK07775         11 RPALVAGASSGIGAATAIELAAAGF--PVALGARRV   44 (274)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3799999999999999999999887  888888765

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.52  E-value=0.55  Score=44.65  Aligned_cols=121  Identities=17%  Similarity=0.221  Sum_probs=80.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCChh-------hhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLE-------NAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~-------~al  110 (356)
                      .+.|.|+||+.-+|.++|+.++..|.  .++|+-...  ++-...++.......++....    ..++.+       .-+
T Consensus        12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            34789999999999999999999987  778888765  333435555443211122111    112222       346


Q ss_pred             CCCcEEEEcCCCCCCCCC-c------HHHHHH----HHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 018433          111 TGMDLVIIPAGVPRKPGM-T------RDDLFN----INAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  168 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~-~------r~~~~~----~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t  168 (356)
                      .+.|+.|..||..+ .+. +      ....+.    -.+-..+...+.+++.+ ++.|++++...+.+.
T Consensus        90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~  156 (282)
T KOG1205|consen   90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP  156 (282)
T ss_pred             CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence            79999999999877 331 1      122333    44577788888888877 899999888777653

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.49  E-value=0.055  Score=55.48  Aligned_cols=70  Identities=17%  Similarity=0.215  Sum_probs=46.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC---CCCCeEEEEeCCCChhhhhCC---CcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---DTGAVVRGFLGQPQLENALTG---MDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~---~~~~~v~~~~~t~d~~~al~~---aDiV  116 (356)
                      ..++|++||- |.+|+.+|..|+..|.  +|+.+|+...+  +.++.+.   .....+..   ..+++++.+.   +|+|
T Consensus         5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~~~~~---a~s~~e~v~~l~~~dvI   76 (493)
T PLN02350          5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNLPLYG---FKDPEDFVLSIQKPRSV   76 (493)
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCccccc---CCCHHHHHhcCCCCCEE
Confidence            3468999999 9999999999999998  99999987521  2222221   00011111   2345565554   9999


Q ss_pred             EEcC
Q 018433          117 IIPA  120 (356)
Q Consensus       117 Ii~a  120 (356)
                      |+..
T Consensus        77 i~~v   80 (493)
T PLN02350         77 IILV   80 (493)
T ss_pred             EEEC
Confidence            9974

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.47  E-value=0.13  Score=46.81  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ..++.|+|++|.+|..++..|+..|.  .++++|.+.
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999998887  899999876

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=95.45  E-value=0.17  Score=48.66  Aligned_cols=105  Identities=19%  Similarity=0.142  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---ch--hHHHHHhcCCCCCeEEEEeCC-CC---hhhhh--CC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TP--GVTADISHMDTGAVVRGFLGQ-PQ---LENAL--TG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~--g~~~dl~~~~~~~~v~~~~~t-~d---~~~al--~~  112 (356)
                      ..+|.|+||+|++||+.+..|+..+.  +++.+|.-.   +.  ..+..+.+.  ...+...... .|   +++-|  ..
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence            35899999999999999999999998  999999755   11  122333332  1233332111 12   22222  34


Q ss_pred             CcEEEEcCCCCC-CCC-CcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433          113 MDLVIIPAGVPR-KPG-MTRDDLFNINAGIVRTLCEGIAKCC  152 (356)
Q Consensus       113 aDiVIi~ag~~~-~~g-~~r~~~~~~N~~i~~~i~~~i~~~~  152 (356)
                      -|-|++.|+... .+. +....+...|+-....+.+.+++++
T Consensus        78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~  119 (343)
T KOG1371|consen   78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN  119 (343)
T ss_pred             CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence            677888776532 111 2346667788888999999999887

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.42  E-value=0.13  Score=46.32  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus        20 s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          20 AKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            39999999 8899999999999987 4899999774

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK07411 hypothetical protein; Validated

Probab=95.42  E-value=0.089  Score=52.42  Aligned_cols=57  Identities=28%  Similarity=0.503  Sum_probs=41.4

Q ss_pred             HHHHHhccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           11 IARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.|.+-|++=|.+-.|.     |++=++.      ||+|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        16 ~~ry~Rq~~l~~~g~~~-----q~~L~~~------~VlivG~-GGlG~~va~~La~~Gv-g~l~lvD~D~   72 (390)
T PRK07411         16 YERYSRHLILPEVGLEG-----QKRLKAA------SVLCIGT-GGLGSPLLLYLAAAGI-GRIGIVDFDV   72 (390)
T ss_pred             HHHhhceechhhcCHHH-----HHHHhcC------cEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence            34555566555544443     3333344      9999999 9999999999999987 4999999874

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.42  E-value=0.093  Score=55.25  Aligned_cols=138  Identities=17%  Similarity=0.197  Sum_probs=83.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChh----hhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLE----NALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~----~al~~aDiVIi~  119 (356)
                      ..+|.|+|. |.+|+.++..|...+.  +++.+|.|+.  .+..+.+.. ..-+.+ . .+|.+    ..+++||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~--~v~~~~~~g-~~v~~G-D-at~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDIS--AVNLMRKYG-YKVYYG-D-ATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHH--HHHHHHhCC-CeEEEe-e-CCCHHHHHhcCCccCCEEEEE
Confidence            468999999 9999999999998888  8999999862  122233221 122222 1 12321    235789999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~  198 (356)
                      .+.+           ..|.    .++..+++.+|+..++.- .||.+.-      .+++. |  .+.++-=+..-+..+-
T Consensus       472 ~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~~~------~L~~~-G--a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVEAH------ELLQA-G--VTQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHHHH------HHHhC-C--CCEEEccHHHHHHHHH
Confidence            5322           3343    355667888999876654 4665432      23443 3  2444433443344555


Q ss_pred             HHHHHHhCCCCCCCc
Q 018433          199 TFVAEVLGLDPRDVD  213 (356)
Q Consensus       199 ~~la~~l~v~~~~v~  213 (356)
                      ...=..+|+++.++.
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            555577788876663

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.35  E-value=0.09  Score=48.30  Aligned_cols=33  Identities=33%  Similarity=0.514  Sum_probs=29.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|+|+ |.+|+.++..|+..|. .+++|+|.+.
T Consensus        23 ~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          23 RVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             cEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            8999999 9999999999999886 4999999765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.32  E-value=0.29  Score=44.93  Aligned_cols=114  Identities=14%  Similarity=0.194  Sum_probs=63.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhh-------hCCCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a-------l~~aDi  115 (356)
                      .+++.|+||+|.+|..++..|+..|.  ++++.+.+.. ....++.+... ..+.. .....+.+++       +...|+
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGV-FTIKCDVGNRDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCC-eEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            45899999999999999999999887  7888765431 11122222110 01110 0001122222       236799


Q ss_pred             EEEcCCCCCC-C--CCcH---HHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecC
Q 018433          116 VIIPAGVPRK-P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       116 VIi~ag~~~~-~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ||..+|.... +  ..+.   ...+..|+..    .+.+.+.+++. ..+.||++|.
T Consensus        83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS  138 (255)
T PRK06463         83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS  138 (255)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9999986431 1  1122   2334455554    55666666533 3456666654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.31  E-value=0.057  Score=47.43  Aligned_cols=57  Identities=28%  Similarity=0.480  Sum_probs=45.2

Q ss_pred             CCCCCeEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           41 GAAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~-vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      ..+..||.|||+ |. +|..++..|...+.  ++.+++.+.                       .++.+.+++||+||.+
T Consensus        41 ~l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsa   94 (168)
T cd01080          41 DLAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVA   94 (168)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEc
Confidence            345679999999 86 58889999988776  788888631                       3566789999999999


Q ss_pred             CCCC
Q 018433          120 AGVP  123 (356)
Q Consensus       120 ag~~  123 (356)
                      .+.|
T Consensus        95 t~~~   98 (168)
T cd01080          95 VGKP   98 (168)
T ss_pred             CCCC
Confidence            8766

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07578 short chain dehydrogenase; Provisional

Probab=95.29  E-value=0.15  Score=45.14  Aligned_cols=101  Identities=19%  Similarity=0.181  Sum_probs=58.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhh---hCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA---LTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a---l~~aDiVIi~ag  121 (356)
                      |++.|+||+|.+|..++..|+..   .+|++++++.. ....|+.+.            .+.++.   +...|++|..+|
T Consensus         1 ~~vlItGas~giG~~la~~l~~~---~~vi~~~r~~~-~~~~D~~~~------------~~~~~~~~~~~~id~lv~~ag   64 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR---HEVITAGRSSG-DVQVDITDP------------ASIRALFEKVGKVDAVVSAAG   64 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc---CcEEEEecCCC-ceEecCCCh------------HHHHHHHHhcCCCCEEEECCC
Confidence            58999999999999999999877   38999987641 011122221            111122   346899999988


Q ss_pred             CCCC-C--CCcHH---HHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433          122 VPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLIS  161 (356)
Q Consensus       122 ~~~~-~--g~~r~---~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  161 (356)
                      .... +  +.+..   ..+..|+.....+.+....+- +.+.++++|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  111 (199)
T PRK07578         65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS  111 (199)
T ss_pred             CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            6421 1  12222   224455554445555444332 345566655

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=95.26  E-value=0.46  Score=43.21  Aligned_cols=114  Identities=14%  Similarity=0.096  Sum_probs=61.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------h
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l  110 (356)
                      +.+.|+|++|.+|..++..|+..|.  ++++.. .+.  ......++....  ..+..+. .-+|.   .++       +
T Consensus         4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (246)
T PRK12938          4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGCGPNSPRRVKWLEDQKALG--FDFIASEGNVGDWDSTKAAFDKVKAEV   79 (246)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999887  777754 322  111222232211  1121111 11222   222       2


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      ...|+||.++|......   .+   ....+..|......+.+.+...   .+.+.|+++|.
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS  140 (246)
T PRK12938         80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISS  140 (246)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEec
Confidence            46899999998753211   11   2334556665544444443322   23356776664

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.24  E-value=0.064  Score=53.90  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .+..+|+|+|+ |.+|..++..|...|. .+|+++|++..  ...+..+.     ..  .+ ...++.+++.++|+||.+
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g-----~~--~i-~~~~l~~~l~~aDvVi~a  247 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELG-----GE--AV-KFEDLEEYLAEADIVISS  247 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC-----Ce--Ee-eHHHHHHHHhhCCEEEEC
Confidence            44579999999 9999999999987763 48999998752  22222221     11  11 123567889999999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                      .+.+..- .+.            +..+...... ...+++-+++|-|+-
T Consensus       248 T~s~~~i-i~~------------e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       248 TGAPHPI-VSK------------EDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             CCCCCce-EcH------------HHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            7654210 111            1111111111 245888889998876

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.21  E-value=0.088  Score=51.61  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..+++|||+ |..+...+..++.-..+.+|.++|++.  +...+.++.+.  ...+..   ..+.++++++||+|+.+.
T Consensus       129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT  201 (346)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence            458999999 988877776665544568999999987  45555566542  223443   257889999999999864

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.21  Score=46.77  Aligned_cols=112  Identities=17%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------CCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------TGM  113 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------~~a  113 (356)
                      .+.|+|| |.+|.+++..|. .|.  +|++.|++.  +.....++....  ..+..+. .-+|   .+.++      ...
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            4566666 899999999986 565  999999875  222223333211  1222111 1122   22222      358


Q ss_pred             cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 018433          114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  164 (356)
Q Consensus       114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv  164 (356)
                      |++|..+|... ...+-...+..|+.....+.+.+...- +++.+++++.-.
T Consensus        78 d~li~nAG~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~  128 (275)
T PRK06940         78 TGLVHTAGVSP-SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS  128 (275)
T ss_pred             CEEEECCCcCC-chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence            99999998752 122344556777766666655555432 334455555433

>PRK06484 short chain dehydrogenase; Validated

Probab=95.21  E-value=0.12  Score=52.97  Aligned_cols=156  Identities=17%  Similarity=0.213  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEE-EeCCCChhhhh-------CCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQLENAL-------TGM  113 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~a  113 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++....  ..+.. .....+.++.+       ...
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            36899999999999999999999887  899999875  222222221100  01111 00011222222       347


Q ss_pred             cEEEEcCCCCC--CC--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433          114 DLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       114 DiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k  185 (356)
                      |++|..+|...  .+  ..+   ....+..|+.....+.+.+..+- ..+.|+++|......            +.|..-
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~  412 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------ALPPRN  412 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------CCCCCc
Confidence            99999998642  11  122   23445666666655555554432 356788877654322            233333


Q ss_pred             EEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          186 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       186 viG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .++.+......+-+.++..++  +..|++..+
T Consensus       413 ~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  442 (520)
T PRK06484        413 AYCASKAAVTMLSRSLACEWA--PAGIRVNTV  442 (520)
T ss_pred             hhHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            455543333455666676653  344544433

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=95.20  E-value=0.099  Score=51.48  Aligned_cols=71  Identities=15%  Similarity=0.147  Sum_probs=46.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-hCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~-~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      +||+|+||+|.||+.+...|. +... ..+++++......|.......    ..+.... .++ .+++++.|+|++++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~----~~~~v~~-~~~-~~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGG----TTGTLQD-AFD-IDALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCC----CcceEEc-Ccc-cccccCCCEEEEcCC
Confidence            489999999999999999888 5553 478999987652222221111    1222221 122 247899999999876

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.20  E-value=0.048  Score=54.14  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc--CCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~--~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .++||+|+||+|.+|..+...|...+. .+|.++..+...|......+  ... .....+. ..+ .++++++|+||++.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~-~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLIT-QDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccC-cccccee-cCC-HHHhcCCCEEEEcC
Confidence            567999999999999999998887743 38888876542222111111  110 1111111 122 23479999999975


Q ss_pred             C
Q 018433          121 G  121 (356)
Q Consensus       121 g  121 (356)
                      +
T Consensus       113 p  113 (381)
T PLN02968        113 P  113 (381)
T ss_pred             C
Confidence            3

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.20  E-value=0.98  Score=41.51  Aligned_cols=115  Identities=18%  Similarity=0.159  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---h---hhhCCCc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---E---NALTGMD  114 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~---~al~~aD  114 (356)
                      .+++.|+|++|.+|..++..|+..|.  +|+++|++.  ......++.... ...+..+. .-+|.   .   +.+...|
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            35899999999999999999998887  899999876  222223333211 11222111 11222   1   1245799


Q ss_pred             EEEEcCCCCC-CC--CCc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 018433          115 LVIIPAGVPR-KP--GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       115 iVIi~ag~~~-~~--g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ++|..+|... .+  ..+   -...+..|+...    +.+.+.+.+. ..+.++++|.
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~iss  140 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNVIG  140 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEecC
Confidence            9999988642 11  111   123345555543    3444444433 2356666653

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.18  E-value=0.24  Score=44.82  Aligned_cols=71  Identities=17%  Similarity=0.111  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..||.|||+ |.+|..-+..|+..|-  .|++++.+... ...++.+.   ..+.......+ .+.+.++|+||.+.+.
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~---~~i~~~~~~~~-~~dl~~~~lVi~at~d   79 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQ---GGITWLARCFD-ADILEGAFLVIAATDD   79 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHc---CCEEEEeCCCC-HHHhCCcEEEEECCCC
Confidence            349999999 9999999999998886  89999976422 22233322   13333322223 3578999999998654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=95.14  E-value=0.61  Score=42.05  Aligned_cols=113  Identities=16%  Similarity=0.186  Sum_probs=61.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhhhC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT  111 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al~  111 (356)
                      .+.|+||+|.+|..++..|+..|.  ++++... +.  ......++....  ..+..+. .-+|.          .+.+.
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCGPNEERAEAWLQEQGALG--FDFRVVEGDVSSFESCKAAVAKVEAELG   77 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhhC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999998887  7888776 32  111111222111  1222211 11221          12234


Q ss_pred             CCcEEEEcCCCCCCC---CC---cHHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTL----CEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~---g~---~r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP  163 (356)
                      ..|+||..+|.....   ..   +-...+..|......+    .+.+++. +.+.|+++|..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~  138 (242)
T TIGR01829        78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSV  138 (242)
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence            689999998864211   11   1233445666654444    3444332 34567776654

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=95.14  E-value=0.072  Score=50.64  Aligned_cols=60  Identities=18%  Similarity=0.307  Sum_probs=43.6

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           49 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        49 IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||. |.+|..++..|+..+.  +|.++|++...  ..++....    ...   +.++.++++++|+||++.
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~v   60 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITML   60 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            5898 9999999999998887  89999987521  22233221    111   245678899999999985

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK06484 short chain dehydrogenase; Validated

Probab=95.10  E-value=0.21  Score=51.17  Aligned_cols=115  Identities=17%  Similarity=0.118  Sum_probs=62.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhh-------hCCCcE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENA-------LTGMDL  115 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~a-------l~~aDi  115 (356)
                      ..+.|+||++.+|..++..|+..|.  .|+++|++.  +.....++........... +...+.+++       +...|+
T Consensus         6 k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          6 RVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPDHHALAMDV-SDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             eEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCceeEEEecc-CCHHHHHHHHHHHHHHhCCCCE
Confidence            4789999999999999999999887  899999875  2222222211000000111 001122222       346899


Q ss_pred             EEEcCCCCC---CC--CCc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecC
Q 018433          116 VIIPAGVPR---KP--GMT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       116 VIi~ag~~~---~~--g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tN  162 (356)
                      +|..+|...   .+  ..+   -...+..|+.....    ..+.+.+....+.|++++.
T Consensus        83 li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS  141 (520)
T PRK06484         83 LVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVAS  141 (520)
T ss_pred             EEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence            999988621   11  111   23345566554444    4444433333346777764

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.08  E-value=0.13  Score=49.67  Aligned_cols=71  Identities=13%  Similarity=0.107  Sum_probs=50.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|||+ |..+..-+..++.-..+.+|.++|++.  +...+..+.+.  ...+...   .+.++++++||+|+.+.
T Consensus       128 ~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT  200 (315)
T PRK06823        128 VSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence            459999999 988888877776655678999999987  34444334332  2334432   46789999999999864

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.08  E-value=1.7  Score=40.28  Aligned_cols=158  Identities=12%  Similarity=0.107  Sum_probs=82.0

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCe-EEE-EeCCCChh-------hhhC
Q 018433           44 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAV-VRG-FLGQPQLE-------NALT  111 (356)
Q Consensus        44 ~~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~-v~~-~~~t~d~~-------~al~  111 (356)
                      .+.+.|+||++  -+|..++..|+..|.  .|++.|.++ ......++.+...... +.. .+...+.+       +.+.
T Consensus         8 ~k~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          8 GKKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             CcEEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            45789999964  599999999998887  888888764 2222333432111001 110 00011111       2235


Q ss_pred             CCcEEEEcCCCCCC-----C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 GMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ..|++|..+|....     +  ..+   -...+..|......+.+.....- ..+.|++++......            +
T Consensus        86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------~  153 (260)
T PRK06603         86 SFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------V  153 (260)
T ss_pred             CccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------C
Confidence            68999998876321     1  112   22334455554444444433222 357788877543211            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .|..-.++.+.-....|-+.+|..++  +..|++..+
T Consensus       154 ~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v  188 (260)
T PRK06603        154 IPNYNVMGVAKAALEASVKYLANDMG--ENNIRVNAI  188 (260)
T ss_pred             CCcccchhhHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            22223455554444556677777764  445544433

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.07  E-value=0.16  Score=51.64  Aligned_cols=91  Identities=20%  Similarity=0.211  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ....+|+|+|. |.+|..+|..+...|.  +|+.+|+++... .+..  + .  ..+      .+++++++.||+||.+.
T Consensus       252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G--~~~------~~leell~~ADIVI~at  317 (476)
T PTZ00075        252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-G--YQV------VTLEDVVETADIFVTAT  317 (476)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-C--cee------ccHHHHHhcCCEEEECC
Confidence            44679999999 9999999999987776  899998876322 1111  1 1  111      24678899999999986


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      |.+   +.            +.  .+.+....|.++++|++-.
T Consensus       318 Gt~---~i------------I~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        318 GNK---DI------------IT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             Ccc---cc------------cC--HHHHhccCCCcEEEEcCCC
Confidence            532   11            11  1234444589999999754

>PRK06953 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.13  Score=46.40  Aligned_cols=114  Identities=16%  Similarity=0.142  Sum_probs=64.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhh---hC--CCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA---LT--GMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a---l~--~aDiVIi  118 (356)
                      .++.|+||+|.+|++++..|+..|.  +++++|.+....  .++..... ..+.. .....+.++.   +.  ..|+||.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGA-EALALDVADPASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccc-eEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence            3789999999999999999988876  899999875111  12222111 01111 0011122221   22  3799999


Q ss_pred             cCCCCC--C-C--CCc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 018433          119 PAGVPR--K-P--GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP  163 (356)
Q Consensus       119 ~ag~~~--~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP  163 (356)
                      ++|...  . +  ..+   -...+..|......+.+.+..+-  ..+.+++++.-
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~  131 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR  131 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence            988642  1 1  112   23345677776666666665432  23455555443

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.06  E-value=0.1  Score=52.47  Aligned_cols=72  Identities=22%  Similarity=0.208  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEE-eCCCChhhh-hCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENA-LTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~-~~t~d~~~a-l~~aDiVIi~ag  121 (356)
                      |||.|+|+ |.+|..++..|...+.  +++++|.++..  ...+.......-+.+- .....++++ +.++|.||++.+
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~--~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~   74 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEER--LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD   74 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence            69999999 9999999999988887  89999987621  1112211100111110 001223444 789999999853

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.03  E-value=0.25  Score=49.52  Aligned_cols=90  Identities=20%  Similarity=0.168  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ....+|+|+|+ |.+|..++..+...|.  +++.+|+++. ...+..+     ...+      .+.+++++++|+||.+.
T Consensus       200 l~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~-----G~~~------~~~~e~v~~aDVVI~at  265 (413)
T cd00401         200 IAGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME-----GYEV------MTMEEAVKEGDIFVTTT  265 (413)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc-----CCEE------ccHHHHHcCCCEEEECC
Confidence            45679999999 9999999999988887  7888999872 2222211     1111      12357889999999986


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHH-HHHhCCCcEEEEecCC
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEG-IAKCCPNATVNLISNP  163 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~-i~~~~p~a~viv~tNP  163 (356)
                      |.+               .++   ... +....|.+++++++.+
T Consensus       266 G~~---------------~~i---~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         266 GNK---------------DII---TGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             CCH---------------HHH---HHHHHhcCCCCcEEEEeCCC
Confidence            532               111   112 3334478899999865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.03  E-value=0.8  Score=44.69  Aligned_cols=142  Identities=20%  Similarity=0.170  Sum_probs=81.2

Q ss_pred             HhccCCCchhhhhhhhh--------hhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH
Q 018433           15 SAHLYPPNLQMEENSCL--------RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT   85 (356)
Q Consensus        15 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~   85 (356)
                      ++.-.|.++..++..-.        |--+.  .+-.+..+|+|+|+ |-+|......+...+.  +++.+|+++ ....+
T Consensus       132 ~~~~iP~~~d~~~aApllCaGiT~y~alk~--~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a  206 (339)
T COG1064         132 YVVKIPEGLDLAEAAPLLCAGITTYRALKK--ANVKPGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELA  206 (339)
T ss_pred             HeEECCCCCChhhhhhhhcCeeeEeeehhh--cCCCCCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHH
Confidence            44567888888776432        22111  23344569999999 8777766666655664  999999987 33344


Q ss_pred             HHHhcCCCCCeEEEEeCCCChhhhhCC-CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433           86 ADISHMDTGAVVRGFLGQPQLENALTG-MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus        86 ~dl~~~~~~~~v~~~~~t~d~~~al~~-aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      .+|-     .+.-+.+...|.-+++++ +|+||.+++ +.                  .+-..++-..+++.++.+.+|-
T Consensus       207 ~~lG-----Ad~~i~~~~~~~~~~~~~~~d~ii~tv~-~~------------------~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         207 KKLG-----ADHVINSSDSDALEAVKEIADAIIDTVG-PA------------------TLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             HHhC-----CcEEEEcCCchhhHHhHhhCcEEEECCC-hh------------------hHHHHHHHHhcCCEEEEECCCC
Confidence            4441     121111111233344443 999999976 31                  2223333344799999999994


Q ss_pred             -CccHHH-HHHHHHHhCCCCCCCEEEec
Q 018433          165 -NSTVPI-AAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       165 -~~~t~~-~~~~~~~~~~~~~~kviG~t  190 (356)
                       .....+ ...+     -+...+|.|+.
T Consensus       263 ~~~~~~~~~~~l-----i~~~~~i~GS~  285 (339)
T COG1064         263 GGPIPLLPAFLL-----ILKEISIVGSL  285 (339)
T ss_pred             CcccCCCCHHHh-----hhcCeEEEEEe
Confidence             332211 1111     13356888883

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.02  E-value=0.25  Score=45.63  Aligned_cols=35  Identities=20%  Similarity=0.156  Sum_probs=29.9

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .+.+.|+||+  +.+|..++..|+..|.  .|++.+++.
T Consensus         7 ~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~   43 (252)
T PRK06079          7 GKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND   43 (252)
T ss_pred             CCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence            3479999996  5899999999999887  899998764

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.02  E-value=0.31  Score=49.05  Aligned_cols=117  Identities=20%  Similarity=0.249  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhh-------hCCCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a-------l~~aDi  115 (356)
                      ..++.|+||+|.+|..++..|+..+.  +++++|.........++........+.. .....+.++.       +...|+
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            46899999999999999999998887  8999998542211122221110011111 0000111111       225899


Q ss_pred             EEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          116 VIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       116 VIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      ||.++|.....   .++   ....+..|+.....+.+.+...   .+.+.|+++|.
T Consensus       288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            99999864321   112   2344567777777777776542   24567777764

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.02  E-value=0.12  Score=45.06  Aligned_cols=57  Identities=26%  Similarity=0.442  Sum_probs=41.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .+.+||+|||.+..||..++..|...+-  .+.+.+.+                       |.++++.++.||+||.+.|
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G   88 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG   88 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence            3456999999988899999999988765  55555432                       3467788899999999998


Q ss_pred             CC
Q 018433          122 VP  123 (356)
Q Consensus       122 ~~  123 (356)
                      .|
T Consensus        89 ~~   90 (160)
T PF02882_consen   89 KP   90 (160)
T ss_dssp             ST
T ss_pred             cc
Confidence            76

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.01  E-value=0.29  Score=49.32  Aligned_cols=93  Identities=19%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ...+|+|+|. |.+|..++..+...|.  +|+.+|+++.+.... ..+ .  ..+      .+++++++++|+||.+.|.
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A-~~~-G--~~v------~~l~eal~~aDVVI~aTG~  277 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQA-AMD-G--FRV------MTMEEAAELGDIFVTATGN  277 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHH-Hhc-C--CEe------cCHHHHHhCCCEEEECCCC
Confidence            5679999999 9999999999988777  899999987222111 011 1  111      1356889999999987643


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      +               .++.  .+.+....+.+++++++-+.+
T Consensus       278 ~---------------~vI~--~~~~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        278 K---------------DVIT--AEHMEAMKDGAILANIGHFDN  303 (425)
T ss_pred             H---------------HHHH--HHHHhcCCCCCEEEEcCCCCC
Confidence            2               1111  122333346789999875443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.01  E-value=0.15  Score=51.38  Aligned_cols=123  Identities=24%  Similarity=0.317  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .++|.|+|+ |.+|..+|..|+..|.  +|+++|.+...   ....++...    .++.+... ...+...++|+||.++
T Consensus         5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~~   76 (450)
T PRK14106          5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVSP   76 (450)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEECC
Confidence            458999999 7899999999999998  99999997521   112233221    12222211 1124467899999998


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCccHHHHHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKK  177 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t~~~~~~~~~  177 (356)
                      |.+...- .....-..+++++...+...+.. + ..+|-+|  |==.+.+.+++.++..
T Consensus        77 g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         77 GVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence            8752211 11122235666666655544432 2 4455665  3333555555555544

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.98  E-value=0.33  Score=50.01  Aligned_cols=150  Identities=15%  Similarity=0.131  Sum_probs=81.1

Q ss_pred             hhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEE-----------eCC
Q 018433           36 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGF-----------LGQ  103 (356)
Q Consensus        36 ~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~-----------~~t  103 (356)
                      -++.+..++.||+|+|+ |.+|...+..+...|-  +|+.+|.++ ....+..+--.  ...+...           ..+
T Consensus       157 ~taaG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s  231 (509)
T PRK09424        157 ITAAGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMS  231 (509)
T ss_pred             eeccCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCe--EEEeccccccccccchhhhcc
Confidence            35566778899999999 9999998888887776  799999987 33333332110  0001000           001


Q ss_pred             CCh--------hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHH-HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433          104 PQL--------ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGI-VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  174 (356)
Q Consensus       104 ~d~--------~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i-~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~  174 (356)
                      .++        .+.++++|+||.++|.|.++..          .. .++..+.   ..|.+.|+.++.+-+-.+.. +.-
T Consensus       232 ~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~---mkpGgvIVdvg~~~GG~~e~-t~~  297 (509)
T PRK09424        232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVAS---MKPGSVIVDLAAENGGNCEL-TVP  297 (509)
T ss_pred             hhHHHHHHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHh---cCCCCEEEEEccCCCCCccc-ccC
Confidence            221        1223689999999998743221          11 1333333   33888888887653222110 000


Q ss_pred             HHHhCCCCCCCEEEechhhHHHHHHHHHHHh
Q 018433          175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVL  205 (356)
Q Consensus       175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l  205 (356)
                      .........-.++|..++++ ++....++.+
T Consensus       298 ~~~v~~~~gVti~Gv~n~P~-~~p~~As~ll  327 (509)
T PRK09424        298 GEVVVTDNGVTIIGYTDLPS-RLPTQSSQLY  327 (509)
T ss_pred             ccceEeECCEEEEEeCCCch-hHHHHHHHHH
Confidence            00000002236678766664 5554344444

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.94  E-value=0.24  Score=44.56  Aligned_cols=33  Identities=18%  Similarity=0.433  Sum_probs=29.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|+|+ |.+|+.++..|+..|. .+|+++|.+.
T Consensus        23 ~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          23 RILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             cEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            9999999 8899999999999986 4899999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02503 fatty acyl-CoA reductase 2

Probab=94.93  E-value=0.31  Score=51.33  Aligned_cols=110  Identities=16%  Similarity=0.095  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCC--c---hhHHHHHhcC-----------C-----CCCeEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN--T---PGVTADISHM-----------D-----TGAVVRG   99 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~--~---~g~~~dl~~~-----------~-----~~~~v~~   99 (356)
                      -+.+.|.|+||+|++|..++..|+... -+.+|+++.+..  .   +....++.+.           .     ...++..
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            356799999999999999999888654 456888887643  1   1110111110           0     0123333


Q ss_pred             EeCC-C---------ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433          100 FLGQ-P---------QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  152 (356)
Q Consensus       100 ~~~t-~---------d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  152 (356)
                      +.+. +         +++...++.|+||.+|+... .+.........|+....++.+.+.+..
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~  258 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK  258 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            2211 1         22333467999999987542 234455667889999999999887653

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.93  E-value=0.18  Score=49.75  Aligned_cols=71  Identities=18%  Similarity=0.195  Sum_probs=44.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~-~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      +||+|+||+|.+|..+...++.. .. ..+++++.....-+...++..    ....... ..|. +.++++|+|+++++
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g----~~~~v~~-~~~~-~~~~~~Divf~a~~   74 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGG----KEGTLQD-AFDI-DALKKLDIIITCQG   74 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCC----CcceEEe-cCCh-hHhcCCCEEEECCC
Confidence            69999999999999999755544 43 457888776432222112221    1122221 1232 56899999999875

>PRK06483 dihydromonapterin reductase; Provisional

Probab=94.91  E-value=0.6  Score=42.24  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +++.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            4799999999999999999998887  899999875

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=94.91  E-value=0.074  Score=52.12  Aligned_cols=74  Identities=24%  Similarity=0.260  Sum_probs=44.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHH-H-HhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTA-D-ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~-L~D~~~~~g~~~-d-l~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |||+|+||+|.+|..++..|...+.. +++ +++.+...+... + ..+..........  ..|.++.++++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNLE--PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCceee--cCCHHHhhcCCCEEEECCC
Confidence            58999999999999999988866433 666 667654222211 1 1111110112221  1244444469999999753

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.89  E-value=0.081  Score=51.56  Aligned_cols=71  Identities=21%  Similarity=0.418  Sum_probs=46.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++||+|+||+|.+|..++..|...++ ..+|..+-.+...+...++..    ..+....  .+ ..+++++|+||++.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~d--~~-~~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVED--LT-TFDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEee--CC-HHHHcCCCEEEECCC
Confidence            36999999999999999999987653 347777755442233222211    2333321  12 245789999999865

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.88  E-value=1.5  Score=41.03  Aligned_cols=156  Identities=14%  Similarity=0.128  Sum_probs=80.1

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCCh----------hhhhC
Q 018433           45 FKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQL----------ENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~----------~~al~  111 (356)
                      ..+.|+||++  -+|..+|..|+..|.  .|++.|+++. .....++.+... ..+.....-+|.          .+.+.
T Consensus         8 k~~lVTGas~~~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          8 KRGLIMGVANDHSIAWGIAKQLAAQGA--ELAFTYQGEALGKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             CEEEEeCCCCCCcHHHHHHHHHHhCCC--EEEEecCchHHHHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            4788999964  799999999999887  8999987651 111222322110 011110011221          11235


Q ss_pred             CCcEEEEcCCCCCC-----C--CCcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 GMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ..|++|..+|....     +  ..+.   ...+..|......+.+.+..+- ..+.||++|......            +
T Consensus        85 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~------------~  152 (271)
T PRK06505         85 KLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR------------V  152 (271)
T ss_pred             CCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc------------c
Confidence            68999999986431     1  1222   2234455544433333332211 246777776543211            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .|..-.++.+.-....+-+.+|..++  +..|++..+
T Consensus       153 ~~~~~~Y~asKaAl~~l~r~la~el~--~~gIrVn~v  187 (271)
T PRK06505        153 MPNYNVMGVAKAALEASVRYLAADYG--PQGIRVNAI  187 (271)
T ss_pred             CCccchhhhhHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            22223455554444456677777763  445544433

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=94.88  E-value=0.14  Score=51.61  Aligned_cols=106  Identities=19%  Similarity=0.278  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .+..+|+|+|+ |.+|..++..|...|. .+|+++|++....  .++.+.. ...+..   ..++.+++.++|+||.+.+
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra--~~la~~~-g~~~~~---~~~~~~~l~~aDvVI~aT~  251 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERA--EELAEEF-GGEAIP---LDELPEALAEADIVISSTG  251 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHH--HHHHHHc-CCcEee---HHHHHHHhccCCEEEECCC
Confidence            45579999999 9999999988887663 4889999875221  1222211 111111   1456678899999999876


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCcc
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNST  167 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~  167 (356)
                      .|... .+.        ..++.   .+..- ....+++-+++|-|+-
T Consensus       252 s~~~~-i~~--------~~l~~---~~~~~~~~~~vviDla~Prdid  286 (423)
T PRK00045        252 APHPI-IGK--------GMVER---ALKARRHRPLLLVDLAVPRDIE  286 (423)
T ss_pred             CCCcE-EcH--------HHHHH---HHhhccCCCeEEEEeCCCCCCc
Confidence            54211 111        11111   11111 2457888889999876

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.87  E-value=0.14  Score=49.60  Aligned_cols=73  Identities=25%  Similarity=0.352  Sum_probs=47.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHH-HHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++||+|+||.|.||+.+...|.... .+.++.++=...-.|.. .+...-..  .+..  ...|. .+++++|+|++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~~-~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAADE-FVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--ccccc-cccccCCEEEEeCc
Confidence            3699999999999999999999854 56777777765522322 32222110  1110  01232 45789999999986

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.81  E-value=0.12  Score=53.49  Aligned_cols=65  Identities=22%  Similarity=0.306  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..++|+|||. |.+|..+|..|..-|.  +|+.+|.......+.++       .+..   ..++++.+++||+|++..
T Consensus       137 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvV~l~l  201 (525)
T TIGR01327       137 YGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL-------GVEL---VDDLDELLARADFITVHT  201 (525)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE---cCCHHHHHhhCCEEEEcc
Confidence            3469999999 9999999999986666  99999975322222111       1121   135788999999999975

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN02494 adenosylhomocysteinase

Probab=94.77  E-value=0.26  Score=50.05  Aligned_cols=94  Identities=22%  Similarity=0.186  Sum_probs=62.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ....+|+|+|. |.+|..++..+...|.  +|+.+|+++.. ..+.  .+. +  .+      .+++++++.+|+||.+.
T Consensus       252 LaGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~--~~G-~--~v------v~leEal~~ADVVI~tT  317 (477)
T PLN02494        252 IAGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQAL--MEG-Y--QV------LTLEDVVSEADIFVTTT  317 (477)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHH--hcC-C--ee------ccHHHHHhhCCEEEECC
Confidence            34579999999 9999999999987776  89999987622 2222  111 1  11      13567899999999976


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  166 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~  166 (356)
                      |...               ++.  .+.+....|+++++|++-+.+.
T Consensus       318 Gt~~---------------vI~--~e~L~~MK~GAiLiNvGr~~~e  346 (477)
T PLN02494        318 GNKD---------------IIM--VDHMRKMKNNAIVCNIGHFDNE  346 (477)
T ss_pred             CCcc---------------chH--HHHHhcCCCCCEEEEcCCCCCc
Confidence            5321               010  2333444478999999876433

>PRK13529 malate dehydrogenase; Provisional

Probab=94.73  E-value=0.38  Score=49.76  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEeCCC--ch------hHHHHHhcCCCCCeE---EEEeCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN--TP------GVTADISHMDTGAVV---RGFLGQ  103 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~----~~~~-----~el~L~D~~~--~~------g~~~dl~~~~~~~~v---~~~~~t  103 (356)
                      ..||.+.|| |..|..+|..|..    .|+.     ..++++|.+-  ..      .....+.+..  ...   ......
T Consensus       295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~~~~~~  371 (563)
T PRK13529        295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWDTEGDV  371 (563)
T ss_pred             hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccccccCC
Confidence            469999999 9999999987765    4653     5899999875  11      1111122211  111   000112


Q ss_pred             CChhhhhCCC--cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          104 PQLENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       104 ~d~~~al~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      .++.++++++  |+.|=+.+.+   |.           +-+++.+.|.+++++.+|+-.|||..
T Consensus       372 ~~L~e~v~~~kPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~  421 (563)
T PRK13529        372 ISLLEVVRNVKPTVLIGVSGQP---GA-----------FTEEIVKEMAAHCERPIIFPLSNPTS  421 (563)
T ss_pred             CCHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            5789999999  9988776544   21           24588889999999999999999997

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=94.72  E-value=0.57  Score=43.13  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=31.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHh----CCCCcEEEEEeCCC--chhHHHHHh
Q 018433           46 KVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN--TPGVTADIS   89 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~----~~~~~el~L~D~~~--~~g~~~dl~   89 (356)
                      .+.|+||++.+|..++..|+.    .+.  .|++.+++.  +.....++.
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~--~V~~~~r~~~~~~~~~~~l~   49 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGS--VLVLSARNDEALRQLKAEIG   49 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCc--EEEEEEcCHHHHHHHHHHHH
Confidence            478999999999999999986    455  899999876  333344454

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK06199 ornithine cyclodeaminase; Validated

Probab=94.71  E-value=0.15  Score=50.66  Aligned_cols=73  Identities=15%  Similarity=0.203  Sum_probs=51.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      ...++|||+ |..+..-+..++.- +.+.+|.++|++.  +...+.++.+.... ..+...   .+.++++++||+|+.+
T Consensus       155 a~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~---~s~~eav~~ADIVvta  230 (379)
T PRK06199        155 SKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVV---DSIEEVVRGSDIVTYC  230 (379)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe---CCHHHHHcCCCEEEEc
Confidence            458999999 98888777766653 3478999999987  45556666543111 134442   5678999999999975


Q ss_pred             C
Q 018433          120 A  120 (356)
Q Consensus       120 a  120 (356)
                      .
T Consensus       231 T  231 (379)
T PRK06199        231 N  231 (379)
T ss_pred             c
Confidence            4

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.71  E-value=0.074  Score=52.08  Aligned_cols=71  Identities=24%  Similarity=0.400  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++||+|+||+|.+|..+...|...+ ...+|.++......|...+..    ...+...  ..+ .+++.++|+||++.+
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~----~~~~~v~--~~~-~~~~~~~D~vf~a~p   78 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFE----GRDYTVE--ELT-EDSFDGVDIALFSAG   78 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeec----CceeEEE--eCC-HHHHcCCCEEEECCC
Confidence            4799999999999999998888754 345777775543222222221    1223321  123 256799999999875

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=94.70  E-value=0.42  Score=46.34  Aligned_cols=122  Identities=18%  Similarity=0.315  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC----C-CCcEEEEEeCCC-chhHHHHHhc------CC--C------CCeEEEEe
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKIN----P-LVSVLHLYDVVN-TPGVTADISH------MD--T------GAVVRGFL  101 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~----~-~~~el~L~D~~~-~~g~~~dl~~------~~--~------~~~v~~~~  101 (356)
                      ..+.||+|||+ |+=|+++|..+...    + ...+|.+.=..+ ..+...-|.+      ..  +      +..+.   
T Consensus        19 ~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~Nvv---   94 (372)
T KOG2711|consen   19 RDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVV---   94 (372)
T ss_pred             cCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeE---
Confidence            34579999999 99999999877643    1 112333332222 2331111221      11  1      22333   


Q ss_pred             CCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC------CCCccHHHHHHH
Q 018433          102 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN------PVNSTVPIAAEV  174 (356)
Q Consensus       102 ~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN------Pv~~~t~~~~~~  174 (356)
                      ..+|+.++.+|||++|+..  |              -+.+..+++.|..+- |++..|-.+-      |-..+ .++++.
T Consensus        95 Av~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i-~liS~i  157 (372)
T KOG2711|consen   95 AVPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGI-RLISQI  157 (372)
T ss_pred             ecchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCce-eehHHH
Confidence            3579999999999999974  3              123556777777665 5665554422      22111 122445


Q ss_pred             HHHhCCCCCC
Q 018433          175 FKKAGTYDPK  184 (356)
Q Consensus       175 ~~~~~~~~~~  184 (356)
                      ..+..|+|-.
T Consensus       158 I~~~lgI~~~  167 (372)
T KOG2711|consen  158 IHRALGIPCS  167 (372)
T ss_pred             HHHHhCCCce
Confidence            5666677655

>PRK06046 alanine dehydrogenase; Validated

Probab=94.69  E-value=0.14  Score=49.77  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..+|+|||+ |..|...+..+.....+.++.++|++.  +...+.++.+. ....+...   +|++++++ +|+|+++.
T Consensus       129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~~---~~~~~~l~-aDiVv~aT  201 (326)
T PRK06046        129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTVA---EDIEEACD-CDILVTTT  201 (326)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEEe---CCHHHHhh-CCEEEEec
Confidence            458999999 999988888777555678999999987  34444444432 12234432   46778886 99999974

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=94.65  E-value=0.11  Score=46.67  Aligned_cols=117  Identities=21%  Similarity=0.225  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      ....+|+|||-+.-||..++..|+..+-  .+.++|++...  .....+.|...  ..+.  -+.++.+.++.||+||.+
T Consensus        60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~--~~~~l~~~~~~ADIVIsA  133 (197)
T cd01079          60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTD--EEAMTLDCLSQSDVVITG  133 (197)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccc--hhhHHHHHhhhCCEEEEc
Confidence            3456999999988999999999998875  89999987611  10011111110  0000  011266788999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      .|.|.-.  -..++                 ..|+++||.++--.|..-    .+..+++.+.|-  +|-
T Consensus       134 vG~~~~~--i~~d~-----------------ik~GavVIDVGi~~dvd~----~v~~~as~iTPv--VGp  178 (197)
T cd01079         134 VPSPNYK--VPTEL-----------------LKDGAICINFASIKNFEP----SVKEKASIYVPS--IGK  178 (197)
T ss_pred             cCCCCCc--cCHHH-----------------cCCCcEEEEcCCCcCccH----hHHhhcCEeCCC--cCH
Confidence            9876310  11111                 227888888862233321    122445556664  776

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=94.64  E-value=0.14  Score=44.52  Aligned_cols=66  Identities=14%  Similarity=0.136  Sum_probs=42.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +..+|+|||- |+-|...|.+|...|+  +|+.-..........--.+. +  .      ..+..||.+.||+|+++.
T Consensus         3 ~~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~G-f--~------v~~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    3 KGKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKADG-F--E------VMSVAEAVKKADVVMLLL   68 (165)
T ss_dssp             CTSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT----E------CCEHHHHHHC-SEEEE-S
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHCC-C--e------eccHHHHHhhCCEEEEeC
Confidence            3469999999 9999999999999998  77666654432222211222 1  1      134679999999999984

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=94.61  E-value=0.1  Score=50.68  Aligned_cols=71  Identities=20%  Similarity=0.280  Sum_probs=52.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..++|||+ |..+..-+..+..--.+.+|.++|+++  .+..+.++..... ..+..   .++.++|+++||+|+.+-
T Consensus       131 ~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~-~~v~a---~~s~~~av~~aDiIvt~T  203 (330)
T COG2423         131 STLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG-EAVGA---ADSAEEAVEGADIVVTAT  203 (330)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC-cccee---ccCHHHHhhcCCEEEEec
Confidence            37899999 988887777776655567999999988  5566666665432 23333   356789999999999864

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.59  E-value=1.8  Score=40.56  Aligned_cols=115  Identities=16%  Similarity=0.064  Sum_probs=62.1

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChh----------hhhC
Q 018433           45 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE----------NALT  111 (356)
Q Consensus        45 ~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~----------~al~  111 (356)
                      +.+.|+||+  +-+|..++..|+..|.  .|++.|+++ ......++.+..... ......-+|.+          +.+.
T Consensus         6 k~~lItGas~~~GIG~aiA~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          6 KKGLIVGVANNKSIAYGIAKACFEQGA--ELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             cEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence            478999995  5799999999999887  899999874 111222222111101 11101112221          1234


Q ss_pred             CCcEEEEcCCCCCC-----C--CCcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                      ..|++|..+|....     +  ..+.   ...+..|+.....+.+.+...- .++.|+++|.
T Consensus        83 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS  144 (274)
T PRK08415         83 KIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY  144 (274)
T ss_pred             CCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence            67999999986421     1  1222   2345566554444444433322 2467777653

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.56  E-value=2.9  Score=38.66  Aligned_cols=156  Identities=14%  Similarity=0.132  Sum_probs=78.6

Q ss_pred             CCCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCC---hh-------hh
Q 018433           43 AGFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LE-------NA  109 (356)
Q Consensus        43 ~~~KI~IIGa--~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d---~~-------~a  109 (356)
                      +.+.+.|+||  ++-+|..++..|+..|.  .|++.++++ ......++..... ..+.....-+|   .+       +.
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA--ELAFTYVVDKLEERVRKMAAELD-SELVFRCDVASDDEINQVFADLGKH   81 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHhccC-CceEEECCCCCHHHHHHHHHHHHHH
Confidence            3457999996  46899999999999887  888887654 2222223322110 01111001112   21       12


Q ss_pred             hCCCcEEEEcCCCCCC-----C---CCcHHH---HHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433          110 LTGMDLVIIPAGVPRK-----P---GMTRDD---LFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  174 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~-----~---g~~r~~---~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~  174 (356)
                      +...|++|..+|....     +   ..+..+   .+..|....    +...+.+++  ..+.|+++|......       
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~--~~g~Iv~iss~~~~~-------  152 (261)
T PRK08690         82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRG--RNSAIVALSYLGAVR-------  152 (261)
T ss_pred             hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhh--cCcEEEEEccccccc-------
Confidence            3468999999986421     1   122221   233444433    333333332  236677776544321       


Q ss_pred             HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                           +.|..-.++.+.-.-..+-+.+|..+  .+..|++..+
T Consensus       153 -----~~~~~~~Y~asKaal~~l~~~la~e~--~~~gIrVn~i  188 (261)
T PRK08690        153 -----AIPNYNVMGMAKASLEAGIRFTAACL--GKEGIRCNGI  188 (261)
T ss_pred             -----CCCCcccchhHHHHHHHHHHHHHHHh--hhcCeEEEEE
Confidence                 12323345554333334566677665  3455554444

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.55  E-value=0.09  Score=51.31  Aligned_cols=71  Identities=21%  Similarity=0.377  Sum_probs=45.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++||+|+||+|.+|.-+...|...+ ...+|.++-..+..|.-+.+..    ..+...  ..+. ++++++|+|+++.+
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~--~~~~-~~~~~vD~vFla~p   75 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR--EVDS-FDFSQVQLAFFAAG   75 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe--eCCh-HHhcCCCEEEEcCC
Confidence            4799999999999999999998654 3457777765442232222221    123321  1232 34789999999753

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.52  E-value=0.11  Score=49.53  Aligned_cols=78  Identities=18%  Similarity=0.305  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .+..+|+|+|++|.+|..++..|+..+.  +|.+++..                       +.++.+.+++||+||.+.|
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG  211 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVG  211 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccC
Confidence            3456999999944599999999988776  88888741                       2345667899999999987


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV  164 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv  164 (356)
                      .|.   .-..                 ....|.++++-+. ||.
T Consensus       212 ~~~---~v~~-----------------~~lk~gavViDvg~n~~  235 (283)
T PRK14192        212 KPE---LIKK-----------------DWIKQGAVVVDAGFHPR  235 (283)
T ss_pred             CCC---cCCH-----------------HHcCCCCEEEEEEEeec
Confidence            442   1110                 1134788888875 885

>PRK08862 short chain dehydrogenase; Provisional

Probab=94.51  E-value=1.3  Score=40.30  Aligned_cols=115  Identities=12%  Similarity=0.080  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhh-------hh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------AL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~-------al  110 (356)
                      .+.+.|+||++.+|..++..|+..|.  +|++++++.  +.....++....  ..+..+. ..+|   .++       .+
T Consensus         5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (227)
T PRK08862          5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF   80 (227)
T ss_pred             CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999988999999999999987  899999876  222333332211  1111111 1112   211       12


Q ss_pred             C-CCcEEEEcCCCCCCCC----CcHHH---HHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 018433          111 T-GMDLVIIPAGVPRKPG----MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       111 ~-~aDiVIi~ag~~~~~g----~~r~~---~~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      . .-|++|..+|....++    .+..+   .+..|.    ...+...+.+.+....+.|+++|.
T Consensus        81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            3 6899999987422111    12211   223333    334445556655444567777764

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.47  E-value=0.26  Score=47.91  Aligned_cols=98  Identities=24%  Similarity=0.309  Sum_probs=61.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...++++|+|. |.+|..+|..+.  +..-+|+.+|+... .......      ..+.    .++++.++.||+|++.+.
T Consensus       144 l~gktvGIiG~-GrIG~avA~r~~--~Fgm~v~y~~~~~~-~~~~~~~------~~~y----~~l~ell~~sDii~l~~P  209 (324)
T COG1052         144 LRGKTLGIIGL-GRIGQAVARRLK--GFGMKVLYYDRSPN-PEAEKEL------GARY----VDLDELLAESDIISLHCP  209 (324)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHh--cCCCEEEEECCCCC-hHHHhhc------Ccee----ccHHHHHHhCCEEEEeCC
Confidence            34579999999 999999999988  55569999998753 1111111      1121    236789999999999753


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  166 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~  166 (356)
                      .  .+ ++|        ..+-  .+.+.+..|.+.+||.+  -=+|.
T Consensus       210 l--t~-~T~--------hLin--~~~l~~mk~ga~lVNtaRG~~VDe  243 (324)
T COG1052         210 L--TP-ETR--------HLIN--AEELAKMKPGAILVNTARGGLVDE  243 (324)
T ss_pred             C--Ch-HHh--------hhcC--HHHHHhCCCCeEEEECCCccccCH
Confidence            2  11 111        1111  12334445789999886  34443

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.45  E-value=0.1  Score=50.73  Aligned_cols=73  Identities=26%  Similarity=0.233  Sum_probs=46.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc--CCCCCeEEEEeCCCChhh-hhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MDTGAVVRGFLGQPQLEN-ALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~--~~~~~~v~~~~~t~d~~~-al~~aDiVIi~  119 (356)
                      ++||+|+||+|..|..+...|...+.. |+.++...+..|..+.-.+  ......++..  +-|.++ ...+||+||++
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla   77 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA   77 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence            579999999999999999998887644 6888887654444332222  2111122221  123333 24569999996

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.42  E-value=0.38  Score=41.68  Aligned_cols=66  Identities=12%  Similarity=0.092  Sum_probs=43.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .||.|||+ |.||...+..|+..+.  +|++++.+..... .++.    ...+..  ..-+ ++.+.++|+||.+.+
T Consensus        14 ~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~~l-~~l~----~i~~~~--~~~~-~~dl~~a~lViaaT~   79 (157)
T PRK06719         14 KVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICKEM-KELP----YITWKQ--KTFS-NDDIKDAHLIYAATN   79 (157)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCHHH-Hhcc----CcEEEe--cccC-hhcCCCceEEEECCC
Confidence            48999999 9999999999998887  8899975322221 2221    111211  1112 356899999999754

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=94.41  E-value=0.38  Score=44.80  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC---------CcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~---------~~el~L~D~~~   80 (356)
                      +.||.|||+ |-+|+.++..|+..|+         ..+|+++|.+.
T Consensus        11 ~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        11 PVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            359999999 9999999999987642         12999999875

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK07877 hypothetical protein; Provisional

Probab=94.41  E-value=0.12  Score=55.35  Aligned_cols=74  Identities=22%  Similarity=0.382  Sum_probs=49.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhH---------------HHHHhcCCCCCeEEEEeC--
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGV---------------TADISHMDTGAVVRGFLG--  102 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----~~g~---------------~~dl~~~~~~~~v~~~~~--  102 (356)
                      .||+|+|+ | +|++++..|+..|++.+|.|+|-+.     +.-+               +..+........+..+..  
T Consensus       108 ~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i  185 (722)
T PRK07877        108 LRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL  185 (722)
T ss_pred             CCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            49999999 9 9999999999999878999999875     1111               111222222334444321  


Q ss_pred             -CCChhhhhCCCcEEEEcC
Q 018433          103 -QPQLENALTGMDLVIIPA  120 (356)
Q Consensus       103 -t~d~~~al~~aDiVIi~a  120 (356)
                       ..+..+-+.++|+||-+.
T Consensus       186 ~~~n~~~~l~~~DlVvD~~  204 (722)
T PRK07877        186 TEDNVDAFLDGLDVVVEEC  204 (722)
T ss_pred             CHHHHHHHhcCCCEEEECC
Confidence             234555678999999874

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.40  E-value=0.16  Score=52.63  Aligned_cols=97  Identities=23%  Similarity=0.334  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|||. |.+|..+|..+..-|.  +|+.+|.........++       .+..    .++++.++.||+|++....
T Consensus       139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~ell~~aDiV~l~lP~  204 (526)
T PRK13581        139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVEL----VSLDELLARADFITLHTPL  204 (526)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE----EcHHHHHhhCCEEEEccCC
Confidence            4569999999 9999999999986666  99999975322111111       1121    1467889999999997532


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  166 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~  166 (356)
                      .  +         .+..++-  .+.+....|++++||++  ..+|.
T Consensus       205 t--~---------~t~~li~--~~~l~~mk~ga~lIN~aRG~~vde  237 (526)
T PRK13581        205 T--P---------ETRGLIG--AEELAKMKPGVRIINCARGGIIDE  237 (526)
T ss_pred             C--h---------HhhcCcC--HHHHhcCCCCeEEEECCCCceeCH
Confidence            1  1         1111110  12333334788888886  44443

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.39  E-value=0.42  Score=45.18  Aligned_cols=33  Identities=21%  Similarity=0.451  Sum_probs=29.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|+|+ |.||+.++..|+..|+ .+|.|+|.+.
T Consensus        32 ~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D~   64 (268)
T PRK15116         32 HICVVGI-GGVGSWAAEALARTGI-GAITLIDMDD   64 (268)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            8999999 9999999999999886 4899999874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.39  E-value=0.32  Score=48.65  Aligned_cols=92  Identities=23%  Similarity=0.172  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ....+|+|+|. |.+|..++..+...|.  +++.+|.++.+.... ..+.   .  ..    .+.+++++++|+||.+.|
T Consensus       193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~G---~--~v----~~leeal~~aDVVItaTG  259 (406)
T TIGR00936       193 IAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMDG---F--RV----MTMEEAAKIGDIFITATG  259 (406)
T ss_pred             CCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-HhcC---C--Ee----CCHHHHHhcCCEEEECCC
Confidence            44569999999 9999999999987776  899999887321111 1111   1  11    134678999999998754


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      .+               .++..  +.+....|.+++++++-+
T Consensus       260 ~~---------------~vI~~--~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       260 NK---------------DVIRG--EHFENMKDGAIVANIGHF  284 (406)
T ss_pred             CH---------------HHHHH--HHHhcCCCCcEEEEECCC
Confidence            22               11111  122223367899888754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.38  E-value=0.017  Score=50.44  Aligned_cols=42  Identities=29%  Similarity=0.253  Sum_probs=33.6

Q ss_pred             hhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           36 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        36 ~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      -..+++.++.||+|+|+ |.+|...+..+..-|.  +++.+|.+.
T Consensus        12 ~~~~~~~~p~~vvv~G~-G~vg~gA~~~~~~lGa--~v~~~d~~~   53 (168)
T PF01262_consen   12 LGGPGGVPPAKVVVTGA-GRVGQGAAEIAKGLGA--EVVVPDERP   53 (168)
T ss_dssp             ECTTTEE-T-EEEEEST-SHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred             ccCCCCCCCeEEEEECC-CHHHHHHHHHHhHCCC--EEEeccCCH
Confidence            35667788999999999 9999999988887777  899999865

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.38  E-value=0.44  Score=48.51  Aligned_cols=124  Identities=15%  Similarity=0.092  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-h--hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..+|.|+|+ |.+|..+|..|...|.  +++++|.... .  .....+.+.    .+....+. +. +...++|+||++.
T Consensus        16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s~   86 (480)
T PRK01438         16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTSP   86 (480)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEECC
Confidence            348999999 9999999999988887  8999997651 1  111223332    12332222 21 2356899999998


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHH--HHHHHhCCCcEEEEecCCC--CccHHHHHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLC--EGIAKCCPNATVNLISNPV--NSTVPIAAEVFKK  177 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~--~~i~~~~p~a~viv~tNPv--~~~t~~~~~~~~~  177 (356)
                      |.+..... ....-..+++++.++-  ..+.+...+..+|-+|=..  .+.+.+++.++..
T Consensus        87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            87632211 1111234455554322  1221111244456665443  4555666666644

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.36  E-value=0.09  Score=51.49  Aligned_cols=71  Identities=24%  Similarity=0.503  Sum_probs=47.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~-~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .+||+|+||+|.+|..+...|... .. ..+|.++......|....+..    ..+...  ..|. ++++++|+|+++++
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~--~~~~-~~~~~~Divf~a~~   77 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQ--EAKI-NSFEGVDIAFFSAG   77 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEE--eCCH-HHhcCCCEEEECCC
Confidence            479999999999999999988854 33 356888876553333322221    233332  1243 56799999999764

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.28  E-value=2.5  Score=39.54  Aligned_cols=161  Identities=14%  Similarity=0.136  Sum_probs=83.5

Q ss_pred             CCCCCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCe-EEE-EeCCCChh-------h
Q 018433           41 GAAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAV-VRG-FLGQPQLE-------N  108 (356)
Q Consensus        41 ~~~~~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~-v~~-~~~t~d~~-------~  108 (356)
                      ..+.+.+.|+||+  +-+|..++..|+..|.  .|++.++++ ......++.+...... +.. .+...+.+       +
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~--~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   84 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA--ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEK   84 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHH
Confidence            3444579999995  5799999999999988  888887653 1222222221110000 110 00001111       2


Q ss_pred             hhCCCcEEEEcCCCCCC-----C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHH
Q 018433          109 ALTGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~  177 (356)
                      .+...|++|..+|....     +  ..+   ....+..|+.....+++.+...- .++.|+++|.....           
T Consensus        85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~-----------  153 (272)
T PRK08159         85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE-----------  153 (272)
T ss_pred             hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc-----------
Confidence            23457999999986421     1  122   23345566655555555444332 34677777643211           


Q ss_pred             hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          178 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       178 ~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                       .+.|..-.++.+.-....+-+.++..+.  +..|++..+
T Consensus       154 -~~~p~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v  190 (272)
T PRK08159        154 -KVMPHYNVMGVAKAALEASVKYLAVDLG--PKNIRVNAI  190 (272)
T ss_pred             -cCCCcchhhhhHHHHHHHHHHHHHHHhc--ccCeEEEEe
Confidence             1233333455554444456667777763  445554444

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=94.28  E-value=0.2  Score=49.70  Aligned_cols=62  Identities=18%  Similarity=0.219  Sum_probs=45.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      -..++|+|||. |+||+.+|..|..-|.  ++..+|......      . .   ...    ..++++.++.||+|++..
T Consensus       114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~~------~-~---~~~----~~~L~ell~~sDiI~lh~  175 (378)
T PRK15438        114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRADR------G-D---EGD----FRSLDELVQEADILTFHT  175 (378)
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCccccc------c-c---ccc----cCCHHHHHhhCCEEEEeC
Confidence            35679999999 9999999999986666  999999632110      0 0   011    135788889999999854

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.28  E-value=0.15  Score=48.59  Aligned_cols=57  Identities=18%  Similarity=0.371  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      -+..+|+|||+++.||..++..|...+.  .+..++..                       |.++++.+++||+||.+.|
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAvg  210 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAVG  210 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECCC
Confidence            4457999999944499999999987775  67766642                       2356788999999999998


Q ss_pred             CC
Q 018433          122 VP  123 (356)
Q Consensus       122 ~~  123 (356)
                      .|
T Consensus       211 ~p  212 (286)
T PRK14175        211 KP  212 (286)
T ss_pred             CC
Confidence            76

>PRK06436 glycerate dehydrogenase; Provisional

Probab=94.28  E-value=0.19  Score=48.29  Aligned_cols=96  Identities=20%  Similarity=0.246  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|+|- |.+|+.+|..+..-|.  +++.+|.....        ..  .. ..   ..++++.++.||+|++....
T Consensus       121 ~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~--~~-~~---~~~l~ell~~aDiv~~~lp~  183 (303)
T PRK06436        121 YNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DG--IS-SI---YMEPEDIMKKSDFVLISLPL  183 (303)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cC--cc-cc---cCCHHHHHhhCCEEEECCCC
Confidence            4579999999 9999999987765566  99999975311        00  00 01   13578889999999997522


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCccH
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTV  168 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t  168 (356)
                        .+ +++        .++-  .+.+....|++++||++  .++|.-.
T Consensus       184 --t~-~T~--------~li~--~~~l~~mk~ga~lIN~sRG~~vd~~a  218 (303)
T PRK06436        184 --TD-ETR--------GMIN--SKMLSLFRKGLAIINVARADVVDKND  218 (303)
T ss_pred             --Cc-hhh--------cCcC--HHHHhcCCCCeEEEECCCccccCHHH
Confidence              11 111        1110  23333334789999996  6776553

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.25  E-value=0.3  Score=46.51  Aligned_cols=75  Identities=20%  Similarity=0.280  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +..++.|+|| |-.|.++++.|+..+. .+|.++|++.  ++..+.++........+... ...++.+.+.++|+||.+.
T Consensus       126 ~~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~-~~~~~~~~~~~~divINaT  202 (283)
T PRK14027        126 KLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGV-DARGIEDVIAAADGVVNAT  202 (283)
T ss_pred             CCCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhccCcceEEec-CHhHHHHHHhhcCEEEEcC
Confidence            3568999999 9899999999987764 4899999876  33333333221111112221 1112234567899999974

>PRK14851 hypothetical protein; Provisional

Probab=94.25  E-value=0.21  Score=53.27  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .||+|+|+ |-+|+.++..|+..|+ .+++|+|-+.
T Consensus        44 ~~VlIvG~-GGlGs~va~~Lar~GV-G~l~LvD~D~   77 (679)
T PRK14851         44 AKVAIPGM-GGVGGVHLITMVRTGI-GRFHIADFDQ   77 (679)
T ss_pred             CeEEEECc-CHHHHHHHHHHHHhCC-CeEEEEcCCE
Confidence            39999999 9999999999999998 5999999764

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=94.25  E-value=0.51  Score=49.03  Aligned_cols=103  Identities=19%  Similarity=0.253  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-----CCC-----CcEEEEEeCCC--chhHHHHHhcC--CCCCeEEEEeCCCChhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKI-----NPL-----VSVLHLYDVVN--TPGVTADISHM--DTGAVVRGFLGQPQLENA  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~-----~~~-----~~el~L~D~~~--~~g~~~dl~~~--~~~~~v~~~~~t~d~~~a  109 (356)
                      ..||.+.|| |..|..++..|..     .|+     ...++++|.+-  ..+..-++.+.  .+.....   ...++.++
T Consensus       321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~---~~~~L~e~  396 (581)
T PLN03129        321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE---PGASLLEA  396 (581)
T ss_pred             hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc---cCCCHHHH
Confidence            479999999 9999999987765     354     25899999875  11110001111  0001111   12578999


Q ss_pred             hCC--CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          110 LTG--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       110 l~~--aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      +++  +|++|=+.+.+   |.           +-+++.+.|.+++++.+|+-.|||.
T Consensus       397 v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~~rPIIFaLSNPt  439 (581)
T PLN03129        397 VKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASLNERPIIFALSNPT  439 (581)
T ss_pred             HhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCC
Confidence            999  89988876544   21           2458888899999999999999998

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=94.25  E-value=0.38  Score=39.35  Aligned_cols=72  Identities=25%  Similarity=0.303  Sum_probs=38.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCchhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ||+|+|++|.+|..++..|...+.+ +++-+ +.+...+......+.... .....+ ...+++  ..++|+||++.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~DvV~~~~~   74 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLEL-EPEDFE--ELAVDIVFLALP   74 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCccccccccccc-ccCChh--hcCCCEEEEcCC
Confidence            6899998799999998888875433 44444 654322221111221110 001111 113332  359999999753

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.24  E-value=3.3  Score=38.26  Aligned_cols=157  Identities=13%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hh-------hhh
Q 018433           45 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NAL  110 (356)
Q Consensus        45 ~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~-------~al  110 (356)
                      +.+.|+||+  +-+|..++..|+..|.  .|++.+++. ......++.+......+..+. .-+|   .+       +.+
T Consensus         8 k~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   85 (257)
T PRK08594          8 KTYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV   85 (257)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence            478999995  5899999999999887  889988653 111111221110011111110 0111   11       123


Q ss_pred             CCCcEEEEcCCCCCC-----C--CCcHH---HHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 TGMDLVIIPAGVPRK-----P--GMTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-----~--g~~r~---~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      ...|++|..+|....     +  ..+..   ..+..|......+.+.+... .+.+.|+++|.-....            
T Consensus        86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------------  153 (257)
T PRK08594         86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER------------  153 (257)
T ss_pred             CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc------------
Confidence            457999999886421     1  12222   22334444433333333322 2357788877543321            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +.|..-.++.+...-..|-+.+|..+.  +..|++..+
T Consensus       154 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrvn~v  189 (257)
T PRK08594        154 VVQNYNVMGVAKASLEASVKYLANDLG--KDGIRVNAI  189 (257)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhh--hcCCEEeee
Confidence            122222345544444456677777763  444544433

>PRK07041 short chain dehydrogenase; Provisional

Probab=94.23  E-value=0.34  Score=43.59  Aligned_cols=107  Identities=15%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe----CCCChhhhhC---CCcEEEEc
Q 018433           49 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLENALT---GMDLVIIP  119 (356)
Q Consensus        49 IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~---~aDiVIi~  119 (356)
                      |+||+|.+|+.++..|+..|.  +|++++++.  ......++...   ..+..+.    ...++.++++   ..|++|..
T Consensus         2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~   76 (230)
T PRK07041          2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGGG---APVRTAALDITDEAAVDAFFAEAGPFDHVVIT   76 (230)
T ss_pred             eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence            899999999999999999887  899999875  22222233211   1122111    1122333333   36999999


Q ss_pred             CCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          120 AGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       120 ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +|.....   ..+   -...+..|......+.+ +......+.|++++
T Consensus        77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~-~~~~~~~g~iv~~s  123 (230)
T PRK07041         77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR-AARIAPGGSLTFVS  123 (230)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh-hhhhcCCeEEEEEC
Confidence            8863211   111   22345566665555655 22233445566554

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=94.23  E-value=0.16  Score=50.99  Aligned_cols=75  Identities=19%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .+..||.|+|+ |.+|..++..|...|. .+|.++++...  .+..+........+..   ..++.+.+.++|+||.+.+
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L~~~g~-~~I~V~nRt~~--ra~~La~~~~~~~~~~---~~~l~~~l~~aDiVI~aT~  251 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHVTALAP-KQIMLANRTIE--KAQKITSAFRNASAHY---LSELPQLIKKADIIIAAVN  251 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEECCCHH--HHHHHHHHhcCCeEec---HHHHHHHhccCCEEEECcC
Confidence            34569999999 9999999999988775 38999998652  2223332210011111   2456788999999999887


Q ss_pred             CC
Q 018433          122 VP  123 (356)
Q Consensus       122 ~~  123 (356)
                      .|
T Consensus       252 a~  253 (414)
T PRK13940        252 VL  253 (414)
T ss_pred             CC
Confidence            66

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=94.22  E-value=0.41  Score=46.85  Aligned_cols=66  Identities=17%  Similarity=0.163  Sum_probs=42.7

Q ss_pred             CeEEEEcCCCch--------------------HHHHHHHHHhCCCCcEEEEEeCCCc--hh-HHHHHhcCCCCCeEEEEe
Q 018433           45 FKVAILGAAGGI--------------------GQPLAMLMKINPLVSVLHLYDVVNT--PG-VTADISHMDTGAVVRGFL  101 (356)
Q Consensus        45 ~KI~IIGa~G~v--------------------G~~~a~~l~~~~~~~el~L~D~~~~--~g-~~~dl~~~~~~~~v~~~~  101 (356)
                      |||+|-|| |+-                    |..+|..|+..|+  +|+++|++..  .. ....+...    .++.  
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~----Gi~~--   71 (342)
T PRK12557          1 MKVSVYGA-GNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA----GVKV--   71 (342)
T ss_pred             CeeEEEcC-cchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC----CCEE--
Confidence            68888888 742                    5667777877777  9999998762  11 11122221    1232  


Q ss_pred             CCCChhhhhCCCcEEEEcC
Q 018433          102 GQPQLENALTGMDLVIIPA  120 (356)
Q Consensus       102 ~t~d~~~al~~aDiVIi~a  120 (356)
                       ++|..+++++||+||++.
T Consensus        72 -asd~~eaa~~ADvVIlaV   89 (342)
T PRK12557         72 -VSDDAEAAKHGEIHILFT   89 (342)
T ss_pred             -eCCHHHHHhCCCEEEEEC
Confidence             235568889999999984

>PLN00203 glutamyl-tRNA reductase

Probab=94.20  E-value=0.23  Score=51.28  Aligned_cols=105  Identities=14%  Similarity=0.166  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...+|+|||+ |.+|..++..|...|. .+|++++++.  +...+..+.    ...+... ...++.+++.++|+||.+.
T Consensus       265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~----g~~i~~~-~~~dl~~al~~aDVVIsAT  337 (519)
T PLN00203        265 ASARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFP----DVEIIYK-PLDEMLACAAEADVVFTST  337 (519)
T ss_pred             CCCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhC----CCceEee-cHhhHHHHHhcCCEEEEcc
Confidence            3579999999 9999999998887764 4799999875  222222221    1122221 1246678899999999876


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCCCCcc
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVNST  167 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNPv~~~  167 (356)
                      +.+. |=            +..+..+.+.+.    ...-.+|-++.|=|+-
T Consensus       338 ~s~~-pv------------I~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId  375 (519)
T PLN00203        338 SSET-PL------------FLKEHVEALPPASDTVGGKRLFVDISVPRNVG  375 (519)
T ss_pred             CCCC-Ce------------eCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence            5432 10            112223333211    1123677789998765

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.18  E-value=0.33  Score=51.39  Aligned_cols=137  Identities=18%  Similarity=0.212  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh----hhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~~al~~aDiVIi~  119 (356)
                      ..+|.|+|. |.+|+.++..|...+.  +++++|.|+..  +..+.+.. ..-+.+ . .+|.    +..+.+||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G-D-at~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFG-MKVFYG-D-ATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcC-CeEEEE-e-CCCHHHHHhcCCCcCCEEEEE
Confidence            468999999 9999999999998887  89999998621  22222221 112222 1 2332    1245689999988


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~  198 (356)
                      ...+           ..|.    .++..+++..|+..++.-+ |+.+ .     +.+++. |  -+.++--+...+.++.
T Consensus       472 ~~d~-----------~~n~----~i~~~ar~~~p~~~iiaRa~d~~~-~-----~~L~~~-G--ad~v~~e~~e~sl~l~  527 (621)
T PRK03562        472 IDDP-----------QTSL----QLVELVKEHFPHLQIIARARDVDH-Y-----IRLRQA-G--VEKPERETFEGALKSG  527 (621)
T ss_pred             eCCH-----------HHHH----HHHHHHHHhCCCCeEEEEECCHHH-H-----HHHHHC-C--CCEEehhhHhHHHHHH
Confidence            5322           3443    3555667778988766554 4433 1     123332 3  2345444555555666


Q ss_pred             HHHHHHhCCCCCCC
Q 018433          199 TFVAEVLGLDPRDV  212 (356)
Q Consensus       199 ~~la~~l~v~~~~v  212 (356)
                      +.+-+.+|++++++
T Consensus       528 ~~~L~~lg~~~~~~  541 (621)
T PRK03562        528 RLVLESLGLGPYEA  541 (621)
T ss_pred             HHHHHHcCCCHHHH
Confidence            66667788776544

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.17  E-value=1.3  Score=42.37  Aligned_cols=119  Identities=16%  Similarity=0.252  Sum_probs=73.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEE----eCCCChhhhhCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGF----LGQPQLENALTG  112 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~----~~t~d~~~al~~  112 (356)
                      ....|.|+||++-+|..+|+.++..+-  .++|.|+|.  .+..+..+.+..    ..+++...    ......++...+
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            445899999988999999999998887  899999998  344444444321    00111100    000123455689


Q ss_pred             CcEEEEcCCCC-CCCC--CcHHH---HHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          113 MDLVIIPAGVP-RKPG--MTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       113 aDiVIi~ag~~-~~~g--~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      .|++|..||.. -++.  .++.+   .+..|    ...++...+.+.+. +++.|+.++.-.
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~IaS~a  175 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTIASVA  175 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEehhhh
Confidence            99999999963 3333  22222   12233    45677888888765 477776665433

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.16  E-value=0.22  Score=42.37  Aligned_cols=56  Identities=27%  Similarity=0.431  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      +.++|+|+|.+..+|..++..|...+.  ++.++|.+                       |.|+++++++||+||.+.|.
T Consensus        27 ~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg~   81 (140)
T cd05212          27 DGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSPK   81 (140)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecCC
Confidence            356899999988999999999887765  66666643                       23567889999999999886


Q ss_pred             C
Q 018433          123 P  123 (356)
Q Consensus       123 ~  123 (356)
                      +
T Consensus        82 ~   82 (140)
T cd05212          82 P   82 (140)
T ss_pred             C
Confidence            5

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.15  E-value=0.3  Score=49.38  Aligned_cols=129  Identities=21%  Similarity=0.185  Sum_probs=78.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      .+||+|+|- |.-|.+++..|...|.  ++..+|.++......+...  ....+....+..+. +.+.++|+||.+-|+|
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~~~--~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi~   80 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQPL--LLEGIEVELGSHDD-EDLAEFDLVVKSPGIP   80 (448)
T ss_pred             CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhhhh--hccCceeecCccch-hccccCCEEEECCCCC
Confidence            679999999 9999999999999887  9999998772211111110  11223332233333 6789999999998887


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHHHHHHHHHhCCC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~--tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ...-.- .......++++-++--..+.. +.+.+|-+  ||==.+.|.++++.+ +..|+
T Consensus        81 ~~~p~v-~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l-~~~G~  137 (448)
T COG0771          81 PTHPLV-EAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLL-KAAGL  137 (448)
T ss_pred             CCCHHH-HHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHH-HhcCC
Confidence            433211 122345666666666666543 22223344  466566666666655 44555

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.11  E-value=0.24  Score=47.08  Aligned_cols=75  Identities=12%  Similarity=0.173  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +..++.|+|| |-+|.++++.|+..+. .+|.+++++.  ++..+.++...   ..+.......++.+.+.++|+||.+.
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~---~~~~~~~~~~~~~~~~~~~DiVInaT  198 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQV---GVITRLEGDSGGLAIEKAAEVLVSTV  198 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhc---CcceeccchhhhhhcccCCCEEEECC
Confidence            4568999999 9999999999988774 4899999875  33333333221   11221111123345678999999975


Q ss_pred             CC
Q 018433          121 GV  122 (356)
Q Consensus       121 g~  122 (356)
                      ..
T Consensus       199 p~  200 (282)
T TIGR01809       199 PA  200 (282)
T ss_pred             CC
Confidence            43

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=94.07  E-value=0.2  Score=49.76  Aligned_cols=62  Identities=21%  Similarity=0.235  Sum_probs=45.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|+|||. |+||+.++..+..-|.  +++.+|.....   .  ..     ... +   .++++.+++||+|++..
T Consensus       114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~--~~-----~~~-~---~~l~ell~~aDiV~lh~  175 (381)
T PRK00257        114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A--EG-----DGD-F---VSLERILEECDVISLHT  175 (381)
T ss_pred             cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----Ccc-c---cCHHHHHhhCCEEEEeC
Confidence            34579999999 9999999999987677  99999974310   0  00     011 1   35778889999999964

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.06  E-value=0.27  Score=46.25  Aligned_cols=71  Identities=18%  Similarity=0.294  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +.+++.|+|+ |.+|.+++..|+..+.  ++.++|++.  ++..+.++...   ..+...  +.+ +..+.++|+||.+.
T Consensus       116 ~~k~vliiGa-Gg~g~aia~~L~~~g~--~v~v~~R~~~~~~~la~~~~~~---~~~~~~--~~~-~~~~~~~DivInat  186 (270)
T TIGR00507       116 PNQRVLIIGA-GGAARAVALPLLKADC--NVIIANRTVSKAEELAERFQRY---GEIQAF--SMD-ELPLHRVDLIINAT  186 (270)
T ss_pred             cCCEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhc---CceEEe--chh-hhcccCccEEEECC
Confidence            3568999999 9999999999998775  899999875  23333333221   112222  111 23456899999986


Q ss_pred             CC
Q 018433          121 GV  122 (356)
Q Consensus       121 g~  122 (356)
                      +.
T Consensus       187 p~  188 (270)
T TIGR00507       187 SA  188 (270)
T ss_pred             CC
Confidence            54

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-174
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-160
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		2e-93
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		1e-92
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		1e-80
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		2e-80
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		2e-79
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		9e-79
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		3e-19
1guz_A	310	Structural Basis For Thermophilic Protein Stability		4e-17
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		4e-17
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		2e-16
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		2e-16
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		8e-15
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		1e-14
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		1e-14
1guy_A	309	Structural Basis For Thermophilic Protein Stability		2e-14
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		2e-14
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		4e-14
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		5e-12
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		5e-12
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		5e-12
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		9e-12
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		1e-11
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		2e-11
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-11
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-11
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		3e-11
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		3e-11
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		6e-11
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		7e-11
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		9e-11
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		9e-11
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		9e-11
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		1e-10
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		2e-10
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		2e-10
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		3e-10
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		3e-10
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		4e-10
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		5e-10
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		6e-10
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		1e-09
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		1e-09
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		2e-09
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		2e-08
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		3e-07
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		2e-06
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		2e-06
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		4e-06
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		6e-06
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		1e-05
1bmd_A	327	Determinants Of Protein Thermostability Observed In		2e-05
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		2e-05
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		2e-05
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-05
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		2e-05
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		3e-05
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		3e-05
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		3e-05
1ldb_A	317	Structure Determination And Refinement Of Bacillus		3e-05
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		7e-05
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		8e-05
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		9e-05
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		1e-04
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		1e-04
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		1e-04
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		2e-04
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		3e-04
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		4e-04
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		5e-04
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		7e-04
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		9e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  608 bits (1569), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/355 (84%), Positives = 317/355 (89%)
Query: 1   MEFSSEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPL 60
           M+   + NQRIARISAHL+PP  QMEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPL
Sbjct: 1   MQPIPDVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 61  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 120
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120
Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT 180
           GVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180
Query: 181 YDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQ 240
           YDPK+LLGVTMLDVVRANTFVAE                HAGVTILPLLSQVKPP SFTQ
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240
Query: 241 EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
           EE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300
Query: 301 QVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 355
           QVTELPFFASKVRLGR G EE++ LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  560 bits (1443), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 276/319 (86%), Positives = 289/319 (90%)
Query: 37  RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 96
           RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 97  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 156
           VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A 
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 157 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXX 216
           VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAE             
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 217 XXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV 276
              HAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240
Query: 277 KFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL 336
           KFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ LGPLNEYERIGL
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300
Query: 337 EKAKKELAGSIQKGISFSK 355
           EKAKKELAGSI+KG+SF +
Sbjct: 301 EKAKKELAGSIEKGVSFIR 319

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  338 bits (868), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 170/310 (54%), Positives = 219/310 (70%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 166 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 225
           ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 226 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 286 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 345
           + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E   + +A  EL  
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301
Query: 346 SIQKGISFSK 355
           SI+KG  F K
Sbjct: 302 SIKKGEEFVK 311

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  336 bits (862), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 170/310 (54%), Positives = 217/310 (70%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 30  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A + +I+NPVN
Sbjct: 90  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 166 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 225
           ST+PI AEVFKK G Y+P K+ GVT LD+VRANTFVAE                HAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 226 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 269
Query: 286 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 345
           + G  GVVEC+FV SQ TE  +F++ + LG++G E+   +G ++ +E   +  A  EL  
Sbjct: 270 MNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKA 329
Query: 346 SIQKGISFSK 355
           SI+KG  F K
Sbjct: 330 SIKKGEDFVK 339

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  296 bits (758), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 165/314 (52%), Positives = 203/314 (64%), Gaps = 4/314 (1%)
Query: 45  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 102
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 103 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  E-DATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 163 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 222
           PVN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 223 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 282
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 283 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE 342
           +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 343 LAGSIQKGISFSKK 356
           L   I  G  F  K
Sbjct: 299 LKKDIALGEEFVNK 312

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/314 (52%), Positives = 203/314 (64%), Gaps = 4/314 (1%)
Query: 45  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 102
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 103 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  EDATP-ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 163 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 222
           PVN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 223 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 282
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 283 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE 342
           +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 343 LAGSIQKGISFSKK 356
           L   I  G  F  K
Sbjct: 299 LKKDIALGQEFVNK 312

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  292 bits (747), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/314 (52%), Positives = 202/314 (64%), Gaps = 4/314 (1%)
Query: 45  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 102
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 103 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  E-DATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 163 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 222
           PVN+TV IAAEV KKAG YD  KL GVT LD++ +NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 223 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 282
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 283 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE 342
           +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 343 LAGSIQKGISFSKK 356
           L   I  G  F  K
Sbjct: 299 LKKDIALGQEFVNK 312

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  290 bits (742), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 163/312 (52%), Positives = 206/312 (66%), Gaps = 5/312 (1%)
Query: 46  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 103
           KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
                AL G D+V+I AGV RKPG  R DLFN+NAGIV++L E IA  CPNA + +I+NP
Sbjct: 65  DPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGV 223
           VN+TVPIAAEV KKAG YD +KL GVT LDV+R+ TFVAE                H+GV
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 224 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 283
           TILPLLSQV+    F+ EE   LT RIQN GTEVVEAKAG GSATLS   AA +F  A +
Sbjct: 184 TILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALV 242
Query: 284 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 343
           + L+G+  V+E A+V        FFA  V+LG++G EEI   G L+++E+  L+   + L
Sbjct: 243 KALQGEE-VIEYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFEKAALDGXLETL 301
Query: 344 AGSIQKGISFSK 355
              IQ G+ F K
Sbjct: 302 NSDIQIGVDFVK 313

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 145/315 (46%), Gaps = 43/315 (13%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV------VRG 99
           K+ ++GA G IG  LA L  I  L  V+ L+D+         +  + T  +      VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 100 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 159
                 LEN+    D+VI+ AGVPRKPG +RDDL  IN  + +T+ EGI   CPNA V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 160 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXX 219
           I+NP++  V     + K +G  D K +    +LD  R  TF+A+                
Sbjct: 121 ITNPLDIXV---NXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGG 177
Query: 220 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 269
           H G T +PL          L Q+       QE  + + +R ++GG E+V A    GSA  
Sbjct: 178 H-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAYY 235
Query: 270 SMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLN 329
           + A A ++ A++ L+  +    ++ C             A+KV+ G  G +E   +G   
Sbjct: 236 APAAAGIQXAESFLKDKK---XILPC-------------AAKVKAGXYGLDEDLFVGVPT 279
Query: 330 EYERIGLEKAKKELA 344
           E    G+   + E++
Sbjct: 280 EISANGVRPIEVEIS 294

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++SNP++    +A  
Sbjct: 71  DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA-- 128
Query: 174 VFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXH--AGVTILPLL 229
            + ++G   PK +++G+  +LD  R  +F+A                 H  A V ++   
Sbjct: 129 -WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYT 185
Query: 230 SQVKPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA------ 281
           +    P S     E  + L  R +NGG E+VE     GSA  + A + V+  ++      
Sbjct: 186 TVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDRK 244
Query: 282 ----CLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE 337
               C  GL G  G+           +  F    V+LGR G E+I+++  L++ +   L+
Sbjct: 245 RVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQIYEIN-LDQADLDLLQ 292
Query: 338 KAKK 341
           K+ K
Sbjct: 293 KSAK 296

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 145/322 (45%), Gaps = 51/322 (15%)
Query: 45  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 104
            K+ ++GA G +G   A  +    L   L L DVV        +   +TG V  G     
Sbjct: 1   MKITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPV--GLF--- 54
Query: 105 QLENALTGM---------DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 155
             +  +TG          D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N 
Sbjct: 55  --DTKITGSNDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNP 112
Query: 156 TVNLISNPVNSTVPIAAEVFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXX 213
            + ++SNP++    +A   + ++G   PK +++G+  +LD  R  +F+A           
Sbjct: 113 IIIVVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDIN 167
Query: 214 XXXXXXH--AGVTILPLLSQVKPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 269
                 H  A V ++   +    P S     E  + L  R +NGG E+VE     GSA  
Sbjct: 168 ACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFY 226
Query: 270 SMAYAAVKFADA----------CLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 319
           + A + V+  ++          C  GL G  G+           +  F    V+LGR G 
Sbjct: 227 APASSVVEMVESIVLDRKRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGV 275
Query: 320 EEIFQLGPLNEYERIGLEKAKK 341
           E+I+++  L++ +   L+K+ K
Sbjct: 276 EQIYEIN-LDQADLDLLQKSAK 296

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 20/235 (8%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           D+V+I AG+ RKPGM+RDDL   N+ I++++   IAK  PNA + +++NPV++   +   
Sbjct: 80  DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA---MTYS 136
Query: 174 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 231
           VFK+AG +  ++++G + +LD  R  TF+A+                H G  ++PL+   
Sbjct: 137 VFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYS 194
Query: 232 ----VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLR 287
               +       +E  E +  R + GG E+V    G GSA  + A + V+  +A L+  R
Sbjct: 195 YAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAYYAPAASLVEMTEAILKDQR 253
Query: 288 G---DAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA 339
                   +E  +  S +    +    V LG  G E+I +L  L + E+  L+++
Sbjct: 254 RVLPAIAYLEGEYGYSDL----YLGVPVILGGNGIEKIIELELLAD-EKEALDRS 303

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 154/327 (47%), Gaps = 39/327 (11%)
Query: 40  GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMDTGAVV 97
           G  A  K+A++G+ G IG  LA L  +  L  V+ L+D+   TP G   DI+     + V
Sbjct: 3   GSMARNKIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPV 57
Query: 98  RGFLGQPQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 154
            GF  +    N   A+ G D+VI+ AGVPRKPGM+RDDL  IN  ++  +  GI K  P 
Sbjct: 58  DGFDAKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPE 117
Query: 155 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 213
           A V  I+NP+++ V       +K       K++G+  +LD  R   F++E          
Sbjct: 118 AFVICITNPLDAMV----WALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVT 173
Query: 214 XXXXXXHAGVTI----------LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 263
                 H    +          +PL   VK   + +Q++ + +  R ++GG E+V     
Sbjct: 174 VFVLGGHGDSMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV-GLLK 231
Query: 264 AGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT-----ELPFFASKVRLGRQG 318
            GSA  + A +A++ A++ L+  +          VA+Q++     +  +      +G  G
Sbjct: 232 TGSAFYAPAASAIQMAESYLKDKK------RVLPVAAQLSGQYGVKDMYVGVPTVIGANG 285
Query: 319 AEEIFQLGPLNEYERIGLEKAKKELAG 345
            E I ++  L++ E+   +K+   +AG
Sbjct: 286 VERIIEI-DLDKDEKAQFDKSVASVAG 311

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 18/236 (7%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           D+V+I AG+PRKPGMTR+DL ++NAGIVR +   I +   N  + ++SNP++    +A  
Sbjct: 71  DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPLDIMTHVA-- 128
Query: 174 VFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXH--AGVTILPLL 229
            ++K+G   PK +++G+  +LD  R  +F+A                 H  A V ++   
Sbjct: 129 -WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGHGDAMVPVVKYT 185
Query: 230 SQVKPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLR 287
           +    P +   + E    L  R + GG E+V      GSA  S A + V+  ++ +   +
Sbjct: 186 TVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYSPATSVVEMVESIVLDRK 244
Query: 288 GDAGVVECA--FVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKK 341
               V+ CA         +  F    V+LG+ G E I+++  L++ +   L+K+ K
Sbjct: 245 ---RVLTCAVSLDGQYGIDGTFVGVPVKLGKNGVEHIYEI-KLDQSDLDLLQKSAK 296

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 174 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 231
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFST 187
Query: 232 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 288
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 289 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 346
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E   L  + K +  +
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRAT 302
Query: 347 IQ 348
           + 
Sbjct: 303 LD 304

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 174 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 231
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFST 187
Query: 232 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 288
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 289 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 346
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E   L  + K +  +
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRAT 302
Query: 347 IQ 348
           + 
Sbjct: 303 LD 304

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 174 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 231
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFST 187
Query: 232 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 288
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 289 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 346
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E   L  + K +  +
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRAT 302
Query: 347 IQ 348
           + 
Sbjct: 303 LD 304

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 17/158 (10%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH----MDTGAVVRG 99
           K++I+GA G IG  +A+L+    L  V +++D++     G   D++H    + + A + G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 100 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 159
                 L+N+    D+VII AGVPRKP MTR DL  +NA IV ++ E + K CPNA V  
Sbjct: 74  ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129
Query: 160 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVR 196
           I+NP+++ V      FK+       K+ G++ +LD  R
Sbjct: 130 ITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSAR 163

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 174 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 231
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFSC 187
Query: 232 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 288
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 289 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 346
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E   L  + K +  +
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRAT 302
Query: 347 IQ 348
           + 
Sbjct: 303 LD 304

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 99
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 100 FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 154
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 67  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 155 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 213
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 124 TFIIVVTNPLDCMVKVMCE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 179
Query: 214 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 259
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 180 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 234

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 99
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 100 FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 154
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 155 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 213
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 126 TFIIVVTNPLDCMVKVMCE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 214 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 259
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 99
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 100 FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 154
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 155 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 213
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 126 TFIIVVTNPLDCMVKVMXE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 214 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 259
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 26/257 (10%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 104 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
                 + G D+VII AG+ + PG      +R+DL   NA I+R + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 217
           +++NP++  V    + F +A       + G+  +LD  R   F+A+              
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 218 XXHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 267
             H G  +LPL          L +       T+ +   +  R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241
Query: 268 TLSMAYAAVKFADACLR 284
             + A +A+  A A L+
Sbjct: 242 YYAPALSAITMAQAFLK 258

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 26/257 (10%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 104 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
                 + G D+VII AG+ + PG      +R+DL   NA I+R + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 217
           +++NP++  V    + F +A       + G+  +LD  R   F+A+              
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 218 XXHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 267
             H G  +LPL          L +       T+ +   +  R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241
Query: 268 TLSMAYAAVKFADACLR 284
             + A +A+  A A L+
Sbjct: 242 YYAPALSAITMAQAFLK 258

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 169
           L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +++NPV+    
Sbjct: 65  LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 170 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 203
           +    F K    DP+K+ G  T+LD  R  T +A+
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQ 155

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 104 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 216
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 217 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 234
Query: 267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 324
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 325 LGPLNEYERIGLEKAKKE 342
           L  LN  E+   ++A  E
Sbjct: 292 L-QLNSEEKAKFDEAIAE 308

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62
Query: 104 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 216
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 123 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 177
Query: 217 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 178 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 233
Query: 267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 324
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 234 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 290
Query: 325 LGPLNEYERIGLEKAKKE 342
           L  LN  E+   ++A  E
Sbjct: 291 L-QLNSEEKAKFDEAIAE 307

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62
Query: 104 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 216
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 123 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 177
Query: 217 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 178 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 233
Query: 267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 324
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 234 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 290
Query: 325 LGPLNEYERIGLEKAKKE 342
           L  LN  E+   ++A  E
Sbjct: 291 L-QLNSEEKAKFDEAIAE 307

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 104 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 216
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 217 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 234
Query: 267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 324
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 325 LGPLNEYERIGLEKAKKE 342
           L  LN  E+   ++A  E
Sbjct: 292 L-QLNSEEKAKFDEAIAE 308

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 129/321 (40%), Gaps = 41/321 (12%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTGAVVRGFLG- 102
           K+ I+GAAG IG  +A    +  L   L LYD   V   GV  +I H        GF G 
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-------GFEGL 62
Query: 103 ----QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-V 157
                  ++ ALT    ++   G PRK GMTR+DL   NA I   L + I   CP+   V
Sbjct: 63  NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHV 122
Query: 158 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXX 217
            +I NP +    I   V        P ++  +  LD  R  + +A+              
Sbjct: 123 IIIFNPAD----ITGLVTLIYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRT 178
Query: 218 XXHAGVTILPLLSQVK---PPCS-------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA 267
               G  +    S  K    P +        T E+   L  R+  GG  +++ +    S+
Sbjct: 179 YGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSS 236
Query: 268 TLSMAYAAVKFADACLRG--LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAE--EIF 323
             S +Y +++   A + G   R  AG     +V     E    A +  + + G +  +I 
Sbjct: 237 FQSPSYVSIEMIRAAMGGEAFRWPAG----CYVNVPGFEHIMMAMETTITKDGVKHSDIN 292
Query: 324 QLGPLNEYERIGLEKAKKELA 344
           QLG  NE ER  L+++   LA
Sbjct: 293 QLG--NEAERAALKESYSHLA 311

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 140/309 (45%), Gaps = 35/309 (11%)
Query: 47  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM--DTGAVVRGFLGQ 103
           + ILGA G +G   A+++ +     +L +      P G   D++H   + G  +R   G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIR-ISGS 59
Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
              E+ + G D+V++ AG+ RKPGMTR+ L   NA  +  L E I     +A V + +NP
Sbjct: 60  NSYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNP 118
Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 222
           V++   +   ++KK G +  ++++G + +LD  R   ++++                H  
Sbjct: 119 VDAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQ 174
Query: 223 VTI-LPLLSQV-KPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAG----SATLSMAYA 274
               +P LS V   P     ++EE E + +   N G ++ E +  +     +A L +   
Sbjct: 175 KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTVE 234
Query: 275 AVKFADACLR----GLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNE 330
           A+K     +      L+G+ G  +       V E+P       +G+ G E I +L PL E
Sbjct: 235 AIKRDSKRIYPYSLYLQGEYGYNDI------VAEVPAV-----IGKSGIERIIEL-PLTE 282
Query: 331 YERIGLEKA 339
            E+   ++A
Sbjct: 283 DEKRKFDEA 291

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 80  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 136
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 137 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 195
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 196 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 252
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 253 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 309
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGRVLPASVKLEGEFGHEDTAFG 262
Query: 310 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
             VRLG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 263 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 80  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 136
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 137 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 195
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 196 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 252
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 253 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 309
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 262
Query: 310 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
             VRLG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 263 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 80  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 136
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 137 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 195
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 196 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 252
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 253 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 309
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 263
Query: 310 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
             VRLG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 264 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 18/220 (8%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           D+ II AG+PR PGM+RDDL   N  IV  + E   +  P++T+ +++NP++    +A E
Sbjct: 71  DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 174 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPL---- 228
               A  +   +++G+  +LD  R  +F+AE                H G T++PL    
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 229 -LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLR 287
            +  +  P        E +  R +  G E+V+      SA  +   AA +  +A    L+
Sbjct: 186 TVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAAAAEMTEAI---LK 240
Query: 288 GDAGVVECAFVASQVTELP--FFASKVRLGRQGAEEIFQL 325
            +  ++ CA        L   F    V+LG  G EE+ ++
Sbjct: 241 DNKRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV 280

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 133/324 (41%), Gaps = 46/324 (14%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           KVAI+GA G +G   A  M +    + L L DV      G   DI+H         F+GQ
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG------LPFMGQ 61
Query: 104 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 159
             L     + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + +
Sbjct: 62  MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121
Query: 160 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXX 218
           +SNPV+    I   + +K       K++G  T+LD +R    ++E               
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177
Query: 219 XHAGVTILPLLSQVK------------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266
            H G + LPL S               P C+FT+E+ + +   ++  G  +++ K   G+
Sbjct: 178 EH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GA 233
Query: 267 ATLSMAYAAVKFADACLRG---LRGDAGVVECAF-VASQVTELPFFASKVRLGRQGAEEI 322
               +A +     +  L+    +R    V+   + +      LP   +      +G +E+
Sbjct: 234 TYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAISLPSIVNS-----EGVQEV 288
Query: 323 FQLGPLNEYE---RIGLEKAKKEL 343
            Q     E E   R   E+ KK L
Sbjct: 289 LQFNLTPEEEEALRFSAEQVKKVL 312

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 141/315 (44%), Gaps = 35/315 (11%)
Query: 49  ILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQPQL 106
           +L  +G IG  +A L+    L  V+ ++DVV N P G   D SH +  A     +     
Sbjct: 7   VLVGSGMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNCKVTGSNS 65
Query: 107 ENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161
            + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I   CPNA + +++
Sbjct: 66  YDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVT 125
Query: 162 NPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXX 219
           NPV+  V +   +F+ +G   PK K++G+  +LD  R   ++++                
Sbjct: 126 NPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGA 180
Query: 220 HAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 269
           H    +L          PL   +      T EE E + +R  N   E+V   A   S  +
Sbjct: 181 HGNKMVLLKRYITVGGIPLQEFINNK-KITDEEVEGIFDRTVNTALEIVNLLA---SPYV 236
Query: 270 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQLGP 327
           + A A ++ A++ L+ ++    V+ C+  +  Q      F  + + +G  G E++ +L  
Sbjct: 237 APAAAIIEMAESYLKDIK---KVLVCSTLLEGQYGHSNIFGGTPLVIGGTGVEQVIEL-Q 292
Query: 328 LNEYERIGLEKAKKE 342
           LN  E+   ++A  E
Sbjct: 293 LNAEEKTKFDEAVAE 307

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 11/162 (6%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTGAVVRGFLG 102
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 103 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162
                + ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I+N
Sbjct: 64  TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 163 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAE 203
           P++    +    F+K       K+ G+  +LD  R  TF+A+
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQ 160

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 22/228 (9%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTGAVVRGFLG 102
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 103 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 162
                + ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I+N
Sbjct: 64  TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 163 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHA 221
           P++    +    F+K       K+ G+  +LD  R  TF+A+                H 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 222 GVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 259
           G  ++P  S V     P  SF      TQE+ + +    +    EV +
Sbjct: 178 GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD 225

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 20/234 (8%)
Query: 45  FKVAILGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADISHMDTGAVVRGF 100
            KV I+GA+G +G   A+L+   P +  L L    + +    G+  DI     G      
Sbjct: 1   MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDAN 60
Query: 101 LGQPQLEN--ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
           +     EN   +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C +  + 
Sbjct: 61  IYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIF 119
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 217
           +I+NPV+  +   A V  K   ++  ++ G+ T LD +R    +A+              
Sbjct: 120 VITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRII 175
Query: 218 XXHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 264
             H G +++PLLS        ++    F +   + +   ++  G +++  K G+
Sbjct: 176 GEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS 228

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 142/318 (44%), Gaps = 36/318 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 104 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
               + L G D+VI+ AG  + PG       R DL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 216
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 217 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 234
Query: 267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 324
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 325 LGPLNEYERIGLEKAKKE 342
           L  LN  E+   ++A  E
Sbjct: 292 L-QLNSEEKAKFDEAIAE 308

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G+ G IG  +A L+    L  V+ ++D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 104 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
               + L   D+VI+ AG  + PG       RDDL  +N  I+  +   I   CPNA + 
Sbjct: 64  SNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFII 123
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 216
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 217 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266
              H    +L          PL   +      T +E + + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNK-KITDQELDAIFDRTINTALEIVNLHA---S 234
Query: 267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFA-SKVRLGRQGAEEIFQ 324
             ++ A A ++ A++ +R LR    V+ C+  +  Q      FA + + +G  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYIRDLR---KVLICSTLLEGQYGHKDIFAGTPLVIGGNGVEQVIE 291
Query: 325 LGPLNEYERIGLEKAKKE 342
           L  LN  E+   ++A  E
Sbjct: 292 L-QLNADEKKKFDEAVAE 308

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 117/280 (41%), Gaps = 28/280 (10%)
Query: 80  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 136
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 137 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 195
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 196 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 252
           R    ++E                H G   +P+ S+V    +   F+ +E E L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 253 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 309
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 263
Query: 310 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
             V LG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 264 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 117/280 (41%), Gaps = 28/280 (10%)
Query: 80  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 136
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 137 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 195
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 196 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 252
           R    ++E                H G   +P+ S+V    +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 253 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 309
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 262
Query: 310 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
             V LG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 263 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 104 PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 216
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 217 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266
              H    +L          PL   +      +  E E + +R  N   E+V   A   +
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---A 234
Query: 267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 324
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 325 LGPLNEYERIGLEKAKKE 342
           L  LN  E+   ++A  E
Sbjct: 292 L-QLNSEEKAKFDEAIAE 308

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 16/147 (10%)
Query: 53  AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL-----E 107
           AG +G   A    +N  V  + L D+     V      MD      G    P++      
Sbjct: 8   AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG---EAMDLAHAAAGIDKYPKIVGGADY 64
Query: 108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 167
           + L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + +++NP++  
Sbjct: 65  SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVM 124
Query: 168 VPIAA--------EVFKKAGTYDPKKL 186
             I          EVF      D ++L
Sbjct: 125 TYIMWKESGKPRNEVFGMGNQLDSQRL 151

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 33  QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD 92
           +A+ +  G  +  KVA+ GAAG IG  L  L+    L+           P    ++  +D
Sbjct: 13  EAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLG----------PTTPVELRLLD 62
Query: 93  TGAVVRGFLG-QPQLEN-----------------ALTGMDLVIIPAGVPRKPGMTRDDLF 134
               ++   G + +LE+                 A  G+ + I+    PRK GM R DL 
Sbjct: 63  IEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLL 122
Query: 135 NINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGVTML 192
            +NA I +   E IA     +  V ++ NP N+   I   + K A G  +P+ +  +T L
Sbjct: 123 EMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRL 179
Query: 193 DVVRANTFVA 202
           D  RA + +A
Sbjct: 180 DHNRALSLLA 189

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 26/244 (10%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           DLV+I AG P++PG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 77  DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 174 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 231
              K   +   +++G  T LD  R    +AE                H G T  P+ S  
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 191
Query: 232 ----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 281
                     VK      +++   +   +++   E+++ K   G+    +A A  + + A
Sbjct: 192 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 248
Query: 282 CLRGLRGDAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA 339
            L     +A +    ++  Q  + +L +  +   + R G + I ++ PL ++E   ++K+
Sbjct: 249 ILND--ENAVLPLSVYMDGQYGINDL-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKS 304
Query: 340 KKEL 343
             +L
Sbjct: 305 ASQL 308

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 26/244 (10%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           DLV+I AG P+KPG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 174 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 231
              K   +   +++G  T LD  R    +AE                H G T  P+ S  
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 232 ----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 281
                     VK      +++   +   +++   E+++ K   G+    +A A  + + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 249
Query: 282 CLRGLRGDAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA 339
            L     +A +    ++  Q  + ++ +  +   + R G + I ++ PL ++E   ++K+
Sbjct: 250 ILND--ENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKS 305
Query: 340 KKEL 343
             +L
Sbjct: 306 ASQL 309

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 26/244 (10%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           DLV+I AG P+KPG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 174 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 231
              K   +   +++G  T LD  R    +A+                H G T  P+ S  
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 232 ----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 281
                     VK      +++   +   ++N   E+++ K   G+    +A A  + + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GATFYGIATALARISKA 249
Query: 282 CLRGLRGDAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA 339
            L     +A +    ++  Q  + ++ +  +   + R G + I ++ PL ++E   ++K+
Sbjct: 250 ILND--ENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKS 305
Query: 340 KKEL 343
             +L
Sbjct: 306 ASQL 309

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 128/326 (39%), Gaps = 33/326 (10%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           K+ ++G  G +G   A+ + +  L   L L D  +T  +  +   +  G++   FL  P+
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDA-DTDKLRGEALDLQHGSL---FLSTPK 75
Query: 106 L-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
           +      N      LVII AG     G TR DL   N  I++ +  G+ +  P+  + ++
Sbjct: 76  IVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVV 135
Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXX 219
           +NPV+    I   V  K   +   +++G    LD  R    + E                
Sbjct: 136 TNPVD----ILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGE 191
Query: 220 HAGVTILPLLSQVK---------PPCSFTQEETEYLTN---RIQNGGTEVVEAKAGAGSA 267
           H G + +P+ S V           P   T +  ++  N   ++  GG EV++ K   G  
Sbjct: 192 H-GDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMK---GYT 247
Query: 268 TLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGP 327
           + ++  +    A + L+ L+    V         + E  F +    LG  G  +  ++  
Sbjct: 248 SWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNM 307
Query: 328 LNEYERIGLEKAKKELAGSIQKGISF 353
             E E  GL K   +   ++QK +  
Sbjct: 308 TAEEE--GLLKKSADTLWNMQKNLEL 331

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 169
           L    +VI+ AG  +KPG +R DL   NA I R L   I +  P+A + + SNPV+    
Sbjct: 65  LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 170 IAAEV 174
           +A ++
Sbjct: 125 LATQL 129

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 43  AGFKVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHM 91
           A  +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++   
Sbjct: 3   APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC 60
Query: 92  DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 151
               ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+ 
Sbjct: 61  -AFPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119
Query: 152 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 203
              +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 120 AKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 43  AGFKVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHM 91
           A  +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++   
Sbjct: 3   APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC 60
Query: 92  DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 151
               ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+ 
Sbjct: 61  -AFPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119
Query: 152 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 203
              +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 120 AKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 136/332 (40%), Gaps = 45/332 (13%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQH---GSL---FLRT 73
Query: 104 PQLENALTGMD--------LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 155
           P++   ++G D        LVII AG  ++ G +R +L   N  I + +   + K  P+ 
Sbjct: 74  PKI---VSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHC 130
Query: 156 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXX 214
            + ++SNPV+    I   V  K   +   +++G    LD  R    + E           
Sbjct: 131 KLLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHG 186
Query: 215 XXXXXH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 261
                H             AGV++  L  ++       +E+ + +  ++ +   EV++ K
Sbjct: 187 WILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDAD--KEQWKQVHKQVVDSAYEVIKLK 244
Query: 262 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEE 321
              G  T ++  +    A++ ++ LR    +         + E  F +    LG+ G  +
Sbjct: 245 ---GYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISD 301
Query: 322 IFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
           + ++  L   E   L+K+   L G IQK + F
Sbjct: 302 VVKV-TLTSEEEAHLKKSADTLWG-IQKELQF 331

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 43  AGFKVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHM 91
           A  +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++   
Sbjct: 3   APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC 60
Query: 92  DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 151
               ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+ 
Sbjct: 61  -AFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119
Query: 152 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 203
              +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 120 AKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           D+V+I AG  +KPG +R +L      I++ +   + K  PNA   LI+NPV+    IA  
Sbjct: 77  DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATH 132
Query: 174 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 203
           V +K       ++ G  T LD  R    +A+
Sbjct: 133 VAQKLTGLPENQIFGSGTNLDSARLRFLIAQ 163

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 133/328 (40%), Gaps = 37/328 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLRT 73
Query: 104 PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
           P++      N      LVII AG  ++ G +R +L   N  I + +   + K  PN  + 
Sbjct: 74  PKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL 133
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 217
           ++SNPV+    I   V  K   +   +++G    LD  R    + E              
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189
Query: 218 XXHAGVTILPLLS----------QVKPPCSFTQEETEY--LTNRIQNGGTEVVEAKAGAG 265
             H G + +P+ S           + P     +++ ++  +  ++     EV++ K   G
Sbjct: 190 GEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLK---G 245
Query: 266 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 325
             + ++  +    A++ ++ LR    V         + +  F +    LG+ G  ++ ++
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV 305
Query: 326 GPLNEYERIGLEKAKKELAGSIQKGISF 353
             L   E   L+K+   L G IQK + F
Sbjct: 306 -TLTSEEEARLKKSADTLWG-IQKELQF 331

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 133/328 (40%), Gaps = 37/328 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLRT 73
Query: 104 PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
           P++      N      LVII AG  ++ G +R +L   N  I + +   + K  PN  + 
Sbjct: 74  PKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL 133
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 217
           ++SNPV+    I   V  K   +   +++G    LD  R    + E              
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189
Query: 218 XXHAGVTILPLLS----------QVKPPCSFTQEETEY--LTNRIQNGGTEVVEAKAGAG 265
             H G + +P+ S           + P     +++ ++  +  ++     EV++ K   G
Sbjct: 190 GEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLK---G 245
Query: 266 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 325
             + ++  +    A++ ++ LR    V         + +  F +    LG+ G  ++ ++
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV 305
Query: 326 GPLNEYERIGLEKAKKELAGSIQKGISF 353
             L   E   L+K+   L G IQK + F
Sbjct: 306 -TLTSEEEARLKKSADTLWG-IQKELQF 331

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 27/201 (13%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           DLV+I AG  +KPG TR DL + N  I R++ E +          + +NPV+    +   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILTYA 132
Query: 174 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ-- 231
            +K +G    + +   T+LD  R    + E                H G T LP+ SQ  
Sbjct: 133 TWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
Query: 232 ---------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA--- 279
                    V+      Q++ E +   +++   +++E K GA    ++M  A V  A   
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE-KKGATYYGIAMGLARVTRAILH 250
Query: 280 --------DACLRGLRGDAGV 292
                    A L GL G+  V
Sbjct: 251 NENAILTVSAYLDGLYGERDV 271

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 27/201 (13%)
Query: 114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 173
           DLV+I AG  +KPG TR DL + N  I R++ E +          + +NPV+    +   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILTYA 132
Query: 174 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ-- 231
            +K +G    + +   T+LD  R    + E                H G T LP+ SQ  
Sbjct: 133 TWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
Query: 232 ---------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA--- 279
                    V+      Q++ E +   +++   +++E K GA    ++M  A V  A   
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE-KKGATYYGIAMGLARVTRAILH 250
Query: 280 --------DACLRGLRGDAGV 292
                    A L GL G+  V
Sbjct: 251 NENAILTVSAYLDGLYGERDV 271

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 46  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA--V 96
           +VA+ GAAG IG  L        ML K  P++  L L    +   +   +  ++  A  +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 97  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNA 155
           + G       + A    D  ++    PRK GM R DL  +N  I       +A+    + 
Sbjct: 65  LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 156 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 203
            V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 169
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 170 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 203
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 169
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 170 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 203
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 169
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 170 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 203
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 132/328 (40%), Gaps = 37/328 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H   G++   FL  
Sbjct: 22  KITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQH---GSL---FLRT 74
Query: 104 PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
           P++      N      LV+I AG  ++ G +R +L   N  I + +   I K  PN  + 
Sbjct: 75  PKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLL 134
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 217
           ++SNPV+    I   V  K   +   +++G    LD  R    + E              
Sbjct: 135 VVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWIL 190
Query: 218 XXHAGVTILPLLSQVK---------PPCSFTQEETEY---LTNRIQNGGTEVVEAKAGAG 265
             H G + +P+ S V           P   T  + E+   +   + +   EV++ K   G
Sbjct: 191 GEH-GDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLK---G 246
Query: 266 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 325
             + ++  +    A++ ++ LR    +         + E  F +    LG+ G  ++ ++
Sbjct: 247 YTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGISDVVKV 306
Query: 326 GPLNEYERIGLEKAKKELAGSIQKGISF 353
             L   E   L+K+   L G IQK + F
Sbjct: 307 -TLTPEEEAHLKKSADTLWG-IQKELQF 332

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 133/329 (40%), Gaps = 39/329 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 74
Query: 104 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 75  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 134
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 217
           ++SNPV+    I   V  K   +   +++G    LD  R    + E              
Sbjct: 135 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 190
Query: 218 XXH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 264
             H             AGV++  L  Q+       +E+ + +  ++ +   EV++ K   
Sbjct: 191 GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKLK--- 245
Query: 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 324
           G  + ++  +    A++ ++ LR    +         + E  F +    LG+ G  ++ +
Sbjct: 246 GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK 305
Query: 325 LGPLNEYERIGLEKAKKELAGSIQKGISF 353
           +  L   E   L+K+   L G IQK + F
Sbjct: 306 V-TLTPDEEARLKKSADTLWG-IQKELQF 332

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 133/329 (40%), Gaps = 39/329 (11%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73
Query: 104 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 74  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133
Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 217
           ++SNPV+    I   V  K   +   +++G    LD  R    + E              
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189
Query: 218 XXH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 264
             H             AGV++  L  Q+       +E+ + +  ++ +   EV++ K   
Sbjct: 190 GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKLK--- 244
Query: 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 324
           G  + ++  +    A++ ++ LR    +         + E  F +    LG+ G  ++ +
Sbjct: 245 GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK 304
Query: 325 LGPLNEYERIGLEKAKKELAGSIQKGISF 353
           +  L   E   L+K+   L G IQK + F
Sbjct: 305 V-TLTPDEEARLKKSADTLWG-IQKELQF 331

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 169
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 170 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 203
           +A   +  +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YALSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 26/247 (10%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           KVA++GA G +G   A  +    +   L + DV N      D+  ++ G   + F  QP 
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHG---KAFAPQPV 61
Query: 106 LENALT-----GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
             +  T       D+V I AG  +KPG TR +L   N  I + +   +     +    + 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXH 220
           +NPV+    +    +K +G    + +   T LD  R    ++E                H
Sbjct: 122 TNPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH 178
Query: 221 AGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 269
            G T LP+ S            V+   ++ QEE + + + ++N    ++E K GA    +
Sbjct: 179 -GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE-KKGATYYGV 236
Query: 270 SMAYAAV 276
           +M+ A +
Sbjct: 237 AMSLARI 243

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 26/247 (10%)
Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           KVA++GA G +G   A  +    +   L + DV N      D+  ++ G   + F  QP 
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHG---KAFAPQPV 61
Query: 106 LENALT-----GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
             +  T       D+V I AG  +KPG TR +L   N  I + +   +     +    + 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXH 220
           +NPV+    +    +K +G    + +   T LD  R    ++E                H
Sbjct: 122 TNPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH 178
Query: 221 AGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 269
            G T LP+ S            V+   ++ QEE + + + ++N    ++E K GA    +
Sbjct: 179 -GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE-KKGATYYGV 236
Query: 270 SMAYAAV 276
           +M+ A +
Sbjct: 237 AMSLARI 243

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 123 PRKPGMTRDDLFNINAGIVRTLCEGI-AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 181
           PR PGM R DL +IN  I     + + A   PN  V ++ NP N+   I     K A   
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 182 DPKKLLGVTMLDVVRANTFVA 202
            PK    +T LD  RA   +A
Sbjct: 186 PPKNFHALTRLDENRAKCQLA 206

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 21/251 (8%)
Query: 115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 174
           +V++ AG  ++ G +R +L   N  I + +   I K  PN  + ++SNPV+    +A   
Sbjct: 91  VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA--- 147
Query: 175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKP 234
           +K +G    + +   T LD  R    + E                H G + +P+ S V  
Sbjct: 148 WKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEH-GDSSVPVWSGVNV 206
Query: 235 PCSFTQ------------EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 282
              F Q            E+ + +   + +   EV++ K   G  + ++  +A     + 
Sbjct: 207 AGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK---GYTSWAIGMSAADLCQSI 263
Query: 283 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE 342
           L+ LR    V         V E  F +    LG  G  ++  +  L   E   L K+ + 
Sbjct: 264 LKNLRKCHPVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHM-TLKSDEEKQLVKSAET 322
Query: 343 LAGSIQKGISF 353
           L G +QK ++ 
Sbjct: 323 LWG-VQKDLTL 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	0.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-176
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-170
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	2e-50
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-43
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	4e-41
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	1e-40
3tl2_A	315	Malate dehydrogenase; center for structural genomi	2e-40
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	2e-40
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	3e-40
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	4e-40
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	2e-39
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	3e-39
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	2e-38
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	3e-38
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	4e-38
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	4e-38
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	1e-37
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	3e-37
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	4e-37
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	4e-37
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	8e-37
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	1e-36
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	1e-36
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	1e-36
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	1e-36
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	1e-35
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	1e-35
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	2e-34
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	6e-34
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	1e-33
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	2e-33
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	3e-33
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	1e-32
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	2e-31
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	4e-31
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	5e-08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	3e-07
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	4e-07
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  508 bits (1310), Expect = 0.0
 Identities = 292/320 (91%), Positives = 305/320 (95%)

Query: 37  RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 96
           RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60

Query: 97  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 156
           VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A 
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120

Query: 157 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 216
           VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180

Query: 217 VGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV 276
           VGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240

Query: 277 KFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL 336
           KFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ LGPLNEYERIGL
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300

Query: 337 EKAKKELAGSIQKGISFSKK 356
           EKAKKELAGSI+KG+SF + 
Sbjct: 301 EKAKKELAGSIEKGVSFIRS 320

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  490 bits (1263), Expect = e-176
 Identities = 180/310 (58%), Positives = 231/310 (74%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 166 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 225
           ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 226 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241

Query: 286 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 345
           + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E   + +A  EL  
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301

Query: 346 SIQKGISFSK 355
           SI+KG  F K
Sbjct: 302 SIKKGEEFVK 311

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  476 bits (1227), Expect = e-170
 Identities = 173/313 (55%), Positives = 214/313 (68%), Gaps = 4/313 (1%)

Query: 46  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 103
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 223
           VN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE+ G  P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 224 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 283
           TILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 284 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 343
           R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299

Query: 344 AGSIQKGISFSKK 356
              I  G  F  K
Sbjct: 300 KKDIALGEEFVNK 312

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  170 bits (434), Expect = 2e-50
 Identities = 78/317 (24%), Positives = 124/317 (39%), Gaps = 25/317 (7%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 103
           K+ I+GAAG IG  +A    +  L   L LYD       GV  +I     G         
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEI--RHCGFEGLNLTFT 67

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISN 162
             ++ ALT    ++   G PRK GMTR+DL   NA I   L + I   CP+   V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127

Query: 163 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 221
           P + T  +       +G   P ++  +  LD  R  + +A+  G+    V      GGH 
Sbjct: 128 PADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182

Query: 222 GVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 271
           G  +             L+ +      T E+   L  R+  GG  +++ +    S+  S 
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSP 240

Query: 272 AYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEY 331
           +Y +++   A + G           +V     E    A +  + + G +        NE 
Sbjct: 241 SYVSIEMIRAAMGGEAFR--WPAGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNEA 298

Query: 332 ERIGLEKAKKELAGSIQ 348
           ER  L+++   LA    
Sbjct: 299 ERAALKESYSHLAKLRD 315

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  151 bits (383), Expect = 2e-43
 Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 50/327 (15%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHMDTGAVVRGFL 101
           KV+++GAAG +G      + +  +   +   D+ +    T    AD +H         + 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG------IAYD 55

Query: 102 GQPQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 157
              ++         G D+V+I AG+PR+PG TR DL   NA I+  +   + +   +   
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 158 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPV 216
              SNPV+    +      +AG    ++++G    LD  R    ++E      ++V+  +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171

Query: 217 VGGHAGVTILPLLSQV----KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 272
           +G H G   +P+ S+V      P  F+ +E E L   +Q    +V+E K   G+     A
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDP-EFSGDEKEQLLGDLQESAMDVIERK---GATEWGPA 226

Query: 273 YAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 322
                  +A L            L G+ G  +             F   V LG  G EEI
Sbjct: 227 RGVAHMVEAILHDTGEVLPASVKLEGEFGHEDT-----------AFGVPVSLGSNGVEEI 275

Query: 323 FQLGPLNEYERIGLEKAKKELAGSIQK 349
            +   L++YE+  +  A ++L+    K
Sbjct: 276 VEW-DLDDYEQDLMADAAEKLSDQYDK 301

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  145 bits (368), Expect = 4e-41
 Identities = 73/331 (22%), Positives = 138/331 (41%), Gaps = 50/331 (15%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGF- 100
           KV I+GA+G +G   A+L+   P +  L L    +      G+  DI             
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYD---ALAGTRSD 58

Query: 101 ----LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 156
               +   +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C    
Sbjct: 59  ANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK- 117

Query: 157 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP 215
           + +I+NPV+    +          ++  ++ G+ T LD +R    +A+  G+   +V   
Sbjct: 118 IFVITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTR 173

Query: 216 VVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 268
           ++G H G +++PLLS        ++    F +   + +   ++  G +++  K   G + 
Sbjct: 174 IIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGSE 229

Query: 269 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 318
              A A +      +            + G+   +    +      +P     V++GR G
Sbjct: 230 FGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIG-----VP-----VKIGRDG 279

Query: 319 AEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
            EE+  +  L++ E I   K+ + +    ++
Sbjct: 280 IEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 309

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  144 bits (366), Expect = 1e-40
 Identities = 79/325 (24%), Positives = 143/325 (44%), Gaps = 44/325 (13%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           KV ++GA G +G  +A  +    +   + + D+ +    G   D+      + + GF  +
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRE---SSPIHGFDTR 57

Query: 104 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
               N        D+ II AG+PR PGM+RDDL   N  IV  + E   +  P++T+ ++
Sbjct: 58  VTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVV 117

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           +NP++    +   V  +A  +   +++G+  +LD  R  +F+AE L +  RDV   ++GG
Sbjct: 118 ANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGG 173

Query: 220 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 274
           H G T++PL         P          E +  R +  G E+V+      SA  +   A
Sbjct: 174 H-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAA 230

Query: 275 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 324
           A +  +A L+             G+ G+ +            F    V+LG  G EE+ +
Sbjct: 231 AAEMTEAILKDNKRILPCAAYCDGEYGLDDL-----------FIGVPVKLGAGGVEEVIE 279

Query: 325 LGPLNEYERIGLEKAKKELAGSIQK 349
           +  L+  E+  L+ +   +  ++  
Sbjct: 280 V-DLDADEKAQLKTSAGHVHSNLDD 303

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  143 bits (364), Expect = 2e-40
 Identities = 89/327 (27%), Positives = 150/327 (45%), Gaps = 46/327 (14%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHMDTGAVVRGFL 101
           KV+++GA G  G   A L+    L  V+ L D+      T     D+      + V+GF 
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLE---ASPVQGFD 64

Query: 102 GQPQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
                 +        D+V+I AG+ RKPGM+RDDL   N+ I++++   IAK  PNA + 
Sbjct: 65  ANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIV 124

Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 217
           +++NPV+           K   +  ++++G   +LD  R  TF+A+ L L  +D+   V+
Sbjct: 125 VLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL 180

Query: 218 GGHAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 272
           GGH G  ++PL+        P  +   +E  E +  R + GG E+V    G GSA  + A
Sbjct: 181 GGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAPA 238

Query: 273 YAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 322
            + V+  +A L+           L G+ G  +            +    V LG  G E+I
Sbjct: 239 ASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL-----------YLGVPVILGGNGIEKI 287

Query: 323 FQLGPLNEYERIGLEKAKKELAGSIQK 349
            +L  L   E+  L+++ + +   ++ 
Sbjct: 288 IEL-ELLADEKEALDRSVESVRNVMKV 313

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  143 bits (363), Expect = 2e-40
 Identities = 91/325 (28%), Positives = 151/325 (46%), Gaps = 43/325 (13%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+ ++GA G +G   A  +    L   L L DVV     G   D+        V  F  +
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYE---SGPVGLFDTK 57

Query: 104 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
               N        D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++
Sbjct: 58  VTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           SNP++    I   V         ++++G+  +LD  R  +F+A  LG+  +D++  V+GG
Sbjct: 118 SNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGG 173

Query: 220 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 274
           H G  ++P++        P       E  + L  R +NGG E+VE     GSA  + A +
Sbjct: 174 H-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPASS 231

Query: 275 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 324
            V+  ++ +            L G  G+ +          +P     V+LGR G E+I++
Sbjct: 232 VVEMVESIVLDRKRVLPCAVGLEGQYGIDKTFV------GVP-----VKLGRNGVEQIYE 280

Query: 325 LGPLNEYERIGLEKAKKELAGSIQK 349
           +  L++ +   L+K+ K +  + + 
Sbjct: 281 I-NLDQADLDLLQKSAKIVDENCKM 304

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  143 bits (362), Expect = 3e-40
 Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 51/327 (15%)

Query: 47  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQP 104
           + ILGA G +G   A+++ +     +L L         G   D++H    A   G   + 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAH---AAAELGVDIRI 56

Query: 105 QLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161
              N    + G D+V++ AG+ RKPGMTR+ L   NA  +  L E I     +A V + +
Sbjct: 57  SGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116

Query: 162 NPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH 220
           NPV+        V  K   +  ++++G   +LD  R   ++++ LG+  + V+  V+G H
Sbjct: 117 NPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH 172

Query: 221 AGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGA-----GSATLS 270
            G  + P+         P     ++EE E + +   N G ++ E +  +      +  + 
Sbjct: 173 -GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVL 231

Query: 271 MAYAAVKFAD--------ACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 322
              A  +  D          L+G  G   +                     +G+ G E I
Sbjct: 232 TVEAIKR--DSKRIYPYSLYLQGEYGYNDI--------------VAEVPAVIGKSGIERI 275

Query: 323 FQLGPLNEYERIGLEKAKKELAGSIQK 349
            +L PL E E+   ++A + +   ++ 
Sbjct: 276 IEL-PLTEDEKRKFDEAVQAVKKLVET 301

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  142 bits (361), Expect = 4e-40
 Identities = 85/325 (26%), Positives = 142/325 (43%), Gaps = 44/325 (13%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K++I+GA G +G   A  +    L  ++ L D+V     G   D+      + + GF  +
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYE---ASPIEGFDVR 58

Query: 104 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
               N        D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + ++
Sbjct: 59  VTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV 118

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           +NP++        +  +   +  ++++G   +LD  R  TF+A   G+   DV   ++GG
Sbjct: 119 NNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGG 174

Query: 220 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 274
           H G  ++PL         P   F   +    +  R + GG E+V      GSA  + A A
Sbjct: 175 H-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAAA 232

Query: 275 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 324
             +  +A L+           L G  G+ +            +F   V LG  G E+I +
Sbjct: 233 TAQMVEAVLKDKKRVMPVAAYLTGQYGLNDI-----------YFGVPVILGAGGVEKILE 281

Query: 325 LGPLNEYERIGLEKAKKELAGSIQK 349
           L PLNE E   L  + K +  ++  
Sbjct: 282 L-PLNEEEMALLNASAKAVRATLDT 305

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  141 bits (358), Expect = 2e-39
 Identities = 98/330 (29%), Positives = 148/330 (44%), Gaps = 49/330 (14%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K++I+GA G IG  +A+L+    L  V  ++D++     G   D++H      + G   +
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNH---CMALIGSPAK 70

Query: 104 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
              EN    L   D+VII AGVPRKP MTR DL  +NA IV ++ E + K CPNA V  I
Sbjct: 71  IFGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICI 130

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           +NP++         FK+       K+ G+  +LD  R    ++  LG+ P DV   VVGG
Sbjct: 131 TNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGG 186

Query: 220 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 269
           H G  ++PL          LS        T  +   +  +   GG E+VE     GSA  
Sbjct: 187 H-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAFY 244

Query: 270 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 319
           + A +AV  A A L+           L G   V              F    V +G+ G 
Sbjct: 245 APAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL-----------FVGVPVVIGKNGI 293

Query: 320 EEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
           E++  +  L++ E+    K+ + +   +Q 
Sbjct: 294 EDVVIV-NLSDDEKSLFSKSVESIQNLVQD 322

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  140 bits (356), Expect = 3e-39
 Identities = 89/330 (26%), Positives = 148/330 (44%), Gaps = 49/330 (14%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H     V+ G   +
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITH---SMVMFGSTSK 60

Query: 104 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
               +    ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I
Sbjct: 61  VIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICI 120

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           +NP++    +    F+K       K+ G+  +LD  R  TF+A+  G++  DV   V+GG
Sbjct: 121 TNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGG 176

Query: 220 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 269
           H G  ++P           LS        TQE+ + +    +    EV +     G+A  
Sbjct: 177 H-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAYF 234

Query: 270 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 319
           + A AAVK A+A L+                GV            +P       +G+ G 
Sbjct: 235 APAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGVKGIYM------GVP-----TIIGKNGV 283

Query: 320 EEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
           E+I +L  L   E+  L ++  E+    + 
Sbjct: 284 EDILEL-DLTPLEQKLLGESINEVNTISKV 312

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  138 bits (351), Expect = 2e-38
 Identities = 94/330 (28%), Positives = 155/330 (46%), Gaps = 49/330 (14%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+A++G+ G IG  LA L  +  L  V+ L+D+      G   DI+     + V GF  +
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPVDGFDAK 63

Query: 104 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
               N   A+ G D+VI+ AGVPRKPGM+RDDL  IN  ++  +  GI K  P A V  I
Sbjct: 64  FTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICI 123

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           +NP++          +K       K++G+  +LD  R   F++E   +   DV V V+GG
Sbjct: 124 TNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGG 179

Query: 220 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 269
           H G +++PL          L  +      +Q++ + +  R ++GG E+V      GSA  
Sbjct: 180 H-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAFY 237

Query: 270 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 319
           + A +A++ A++ L+           L G  GV +            +      +G  G 
Sbjct: 238 APAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDM-----------YVGVPTVIGANGV 286

Query: 320 EEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
           E I ++  L++ E+   +K+   +AG  + 
Sbjct: 287 ERIIEI-DLDKDEKAQFDKSVASVAGLCEA 315

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  138 bits (349), Expect = 3e-38
 Identities = 90/336 (26%), Positives = 146/336 (43%), Gaps = 55/336 (16%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--- 100
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH      V      
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSH---VTSVVDTNVS 65

Query: 101 -LGQPQLENALTGMDLVIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPN 154
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125

Query: 155 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 213
             + +++NP++       +V  +A       + G+  MLD  R   +VA+ L + PRDV 
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 214 VPVVGGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAG 263
             V+G H G  ++PL+  +                T+++ E +    +  G E+V    G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239

Query: 264 AGSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVR 313
            GSA  + A +AV  A + L              G+ G+ +            F      
Sbjct: 240 QGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLKDM-----------FIGLPAV 288

Query: 314 LGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
           +G  G E + +L  LNE E+   +K+  ++    + 
Sbjct: 289 IGGAGIERVIEL-ELNEEEKKQFQKSVDDVMALNKA 323

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  137 bits (348), Expect = 4e-38
 Identities = 68/335 (20%), Positives = 125/335 (37%), Gaps = 54/335 (16%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           +V ++GA G +G      +    +   + L D       G   D +H   G V   F  +
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH---GKV---FAPK 60

Query: 104 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
           P              DLV+I AG  +KPG TR DL + N  I R++ E +          
Sbjct: 61  PVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFL 120

Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 217
           + +NPV+    I      K      ++++G  T+LD  R    + E   + P++V   ++
Sbjct: 121 VATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII 176

Query: 218 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 267
           G H        +   I  +P+   V+      Q++ E +   +++   +++E K   G+ 
Sbjct: 177 GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GAT 233

Query: 268 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 317
              +A    +   A L            L G  G  +          +P       + R 
Sbjct: 234 YYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYI------GVP-----AVINRN 282

Query: 318 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 352
           G  E+ ++  LN+ E+     +   L   + +  +
Sbjct: 283 GIREVIEI-ELNDDEKNRFHHSAATLKSVLARAFT 316

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  137 bits (348), Expect = 4e-38
 Identities = 96/331 (29%), Positives = 155/331 (46%), Gaps = 50/331 (15%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+ ++GA G IG  LA L  I  L  V+ L+D+      G   D+        + G   +
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQ---TCPIEGVDFK 61

Query: 104 PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
            +  N    L   D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CPNA V  I
Sbjct: 62  VRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICI 121

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 219
           +NP++    I   + +K       K++G+  +LD  R  TF+A+ L +  + V   V+GG
Sbjct: 122 TNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGG 177

Query: 220 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 269
           H G T++PL          L Q+       QE  + + +R ++GG E+V      GSA  
Sbjct: 178 H-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAYY 235

Query: 270 SMAYAAVKFADACLRGLR-----------GDAGVVECAFVASQVTELPFFASKVRLGRQG 318
           + A A ++ A++ L+  +           G  G+ E  FV      +P       +   G
Sbjct: 236 APAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVG-----VP-----TEISANG 285

Query: 319 AEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
              I ++  +++ ER  L+ +   +    + 
Sbjct: 286 VRPI-EV-EISDKEREQLQVSINAIKDLNKA 314

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  136 bits (346), Expect = 1e-37
 Identities = 73/339 (21%), Positives = 129/339 (38%), Gaps = 54/339 (15%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           KVA++GA G +G   A  +    +   L + DV      G   D++H   G     F  Q
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNH---GKA---FAPQ 59

Query: 104 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
           P   +          D+V I AG  +KPG TR +L   N  I + +   +     +    
Sbjct: 60  PVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFL 119

Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 217
           + +NPV+    I      K      ++++G  T LD  R    ++E  G  P++V   ++
Sbjct: 120 VATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII 175

Query: 218 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 267
           G H        +   +  +P+   V+   ++ QEE + + + ++N    ++E K   G+ 
Sbjct: 176 GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GAT 232

Query: 268 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 317
              +A +  +   A L            L G  G  +          +P       + R 
Sbjct: 233 YYGVAMSLARITKAILHNENSILTVSTYLDGQYGADDVYI------GVP-----AVVNRG 281

Query: 318 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           G   I +L  LNE E+     +   L   ++   +  K 
Sbjct: 282 GIAGITEL-NLNEKEKEQFLHSAGVLKNILKPHFAEQKV 319

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  135 bits (342), Expect = 3e-37
 Identities = 68/334 (20%), Positives = 128/334 (38%), Gaps = 54/334 (16%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           KV ++G  G +G   A  M    +     + DVV   T G   D+           F   
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED---AQA---FTAP 59

Query: 104 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 159
            ++     +     DLV+I AG P+KPG +R DL N N  I+ ++ + +     +    +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 160 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 218
            +NPV+    I      K   +  ++++G  T LD  R    + +   +DPR VD  ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175

Query: 219 GHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 268
            H G +     S                  + ++   L + ++N   +++  K   G+  
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATF 231

Query: 269 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 318
             +  A ++ + A LR           + G  G+ +           P       +G  G
Sbjct: 232 YGIGTALMRISKAILRDENAVLPVGAYMDGQYGLNDIYI------GTP-----AIIGGTG 280

Query: 319 AEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 352
            ++I +  PL+  E   ++ +   L   +  G++
Sbjct: 281 LKQIIES-PLSADELKKMQDSAATLKKVLNDGLA 313

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  135 bits (342), Expect = 4e-37
 Identities = 70/334 (20%), Positives = 135/334 (40%), Gaps = 53/334 (15%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           KV ++G  G +G   A  M +  +   + + D+    T G   D+S+         F   
Sbjct: 11  KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN---ALP---FTSP 63

Query: 104 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 159
            ++     +     DLV+I AG P+KPG TR DL N N  I++++ + I     N    +
Sbjct: 64  KKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 160 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 218
            +NPV+    I      K   +   +++G  T LD  R    +AE++ +D R V   ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179

Query: 219 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 268
            H        +   I  + +   VK      +++   +   +++   E+++ K   G+  
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATF 236

Query: 269 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 318
             +A A  + + A L            + G  G+ +           P       + R G
Sbjct: 237 YGIATALARISKAILNDENAVLPLSVYMDGQYGLNDIYI------GTP-----AVINRNG 285

Query: 319 AEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 352
            + I ++ PL ++E   ++K+  +L   +    +
Sbjct: 286 IQNILEI-PLTDHEEESMQKSASQLKKVLTDAFA 318

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  135 bits (342), Expect = 4e-37
 Identities = 76/338 (22%), Positives = 144/338 (42%), Gaps = 57/338 (16%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73

Query: 104 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 74  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133

Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 217
           ++SNPV+    I   V  K   +   +++G    LD  R    + E LG+ P      V+
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189

Query: 218 GGHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 265
           G H G + +P+ S V            +      +E+ + +  ++ +   EV++ K   G
Sbjct: 190 GEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---G 245

Query: 266 SATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLG 315
             + ++  +    A++ ++           ++G  G+ E  F++     +P       LG
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLS-----VP-----CILG 295

Query: 316 RQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
           + G  ++ ++  L   E   L+K+   L G IQK + F
Sbjct: 296 QNGISDVVKV-TLTPDEEARLKKSADTLWG-IQKELQF 331

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  134 bits (339), Expect = 8e-37
 Identities = 69/339 (20%), Positives = 126/339 (37%), Gaps = 59/339 (17%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+A++GA G +G  LA       +   + L D+          D+ H   G+    F   
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQH---GSS---FYPT 61

Query: 104 PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
             ++           D+V+I AG  +KPG +R +L      I++ +   + K  PNA   
Sbjct: 62  VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121

Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 217
           LI+NPV+    IA  V +K       ++ G  T LD  R    +A+  G++ ++V   + 
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177

Query: 218 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 264
           G H              GV +               ++ E +   ++N   +++  K   
Sbjct: 178 GEHGDSEVPLWESATIGGVPMSDWTPLPGHDP-LDADKREEIHQEVKNAAYKIINGK--- 233

Query: 265 GSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRL 314
           G+   ++  + V   +A L            L+   G+ +          +P       L
Sbjct: 234 GATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDICM------SVP-----TLL 282

Query: 315 GRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
            RQG        P+++ E   L+++ + L         F
Sbjct: 283 NRQGVNNTINT-PVSDKELAALKRSAETLK-ETAAQFGF 319

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  134 bits (339), Expect = 1e-36
 Identities = 84/335 (25%), Positives = 144/335 (42%), Gaps = 56/335 (16%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+ ++G+ G IG  +A L+    L  V+ L+D+V     G   D SH     V+     +
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSH---TNVMAYSNCK 60

Query: 104 PQLEN---ALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 155
               N    L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA
Sbjct: 61  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120

Query: 156 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 214
            + +++NPV+    +  ++  +       K++G+  +LD  R   ++++ L + PRDV+ 
Sbjct: 121 FIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176

Query: 215 PVVGGHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 264
            +VG H G  ++ L          L +       +  E E + +R  N   E+V      
Sbjct: 177 HIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH--- 232

Query: 265 GSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRL 314
            S  ++ A A ++ A++ L+           L G  G  +            F  + V L
Sbjct: 233 ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI-----------FGGTPVVL 281

Query: 315 GRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
           G  G E++ +L  LN  E+   ++A  E       
Sbjct: 282 GANGVEQVIEL-QLNSEEKAKFDEAIAETKRMKAL 315

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  133 bits (338), Expect = 1e-36
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 53/331 (16%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+ I+G  G +G   A  + +      + L DV      G   D+ H   G     F  +
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH---GTP---FTRR 54

Query: 104 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 159
             +       L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 160 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 218
           ++NPV+    +    F K    DP+K+ G  T+LD  R  T +A+  G  PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 219 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 268
            H        +G  I  +PL +  +       +  E    + +    E++E K   G+  
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATH 227

Query: 269 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 318
            ++A A     ++              L    GV +          +P     V LG+ G
Sbjct: 228 YAIALAVADIVESIFFDEKRVLTLSVYLEDYLGVKDLCI------SVP-----VTLGKHG 276

Query: 319 AEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
            E I +L  LNE E     K+   L  +I +
Sbjct: 277 VERILEL-NLNEEELEAFRKSASILKNAINE 306

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  133 bits (337), Expect = 1e-36
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 55/332 (16%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           KV ++G  G +G   A  +    +V  L + D+      G   D+ H         +   
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATP------YSPT 60

Query: 104 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
                A         DLV+I AG  +KPG TR DL + N  I +++   +     +    
Sbjct: 61  TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL 120

Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 217
           + +NPV+    I A    K      ++++G  T+LD  R    ++E   + PR VD  ++
Sbjct: 121 VATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176

Query: 218 GGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 267
           G H G T LP+ S                   + + E +  + ++   ++++AK   G+ 
Sbjct: 177 GEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GAT 232

Query: 268 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 317
              +A    +  +A  R           L G+    +          +P       + R 
Sbjct: 233 YYGVAMGLARITEAIFRNEDAVLTVSALLEGEYEEEDVYI------GVP-----AVINRN 281

Query: 318 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
           G   + ++ PLN+ E+     + K L   + +
Sbjct: 282 GIRNVVEI-PLNDEEQSKFAHSAKTLKDIMAE 312

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  133 bits (337), Expect = 1e-36
 Identities = 69/337 (20%), Positives = 122/337 (36%), Gaps = 57/337 (16%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           KV I+G+ G +G   A  + +  +   + L D+          DI H         F   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54

Query: 104 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 159
             +       L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 160 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 218
            +NPV+    +  +V        P +++G  T+LD  R    +AE L + P+ V   V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 219 GHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 266
            H G + + + S                  + + E+   +   ++     ++E K   G+
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GA 226

Query: 267 ATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGR 316
               +     +   A L                AGV+E +        LP       LG 
Sbjct: 227 TYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVAGVLEVSL------SLP-----RILGA 275

Query: 317 QGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
            G         L+  ER  L ++ + L       + F
Sbjct: 276 GGVAGTVYP-SLSPEERAALRRSAEILKE-AAFALGF 310

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  131 bits (332), Expect = 1e-35
 Identities = 71/327 (21%), Positives = 123/327 (37%), Gaps = 41/327 (12%)

Query: 46  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 94
           +V + GAAG I   L        +  K  P++  L L D+        GV  ++   D  
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60

Query: 95  AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 153
              ++  +   + E A   +D+ I+   +PR+ GM R DL   N  I +     + K   
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120

Query: 154 NAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 212
            +  V ++ NP N+    A+   K A +   +    +T LD  RA   +A  LG+   DV
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177

Query: 213 DVPVVGGHAGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAK 261
              ++ G+   T  P ++            V                 +Q  G  V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237

Query: 262 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ-----VTELPFFASKVRLGR 316
               SA +S A A          G     G      + S      V +   ++  V +  
Sbjct: 238 -KLSSA-MSAAKAICDHVRDIWFG--TPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKD 293

Query: 317 QGAEEIFQLGPLNEYERIGLEKAKKEL 343
           +  + +  L P+N++ R  ++   KEL
Sbjct: 294 KTWKIVEGL-PINDFSREKMDLTAKEL 319

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  131 bits (332), Expect = 1e-35
 Identities = 80/334 (23%), Positives = 141/334 (42%), Gaps = 58/334 (17%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           KVAI+GA G +G   A  M +    + L L DV      G   DI+H   G     F+GQ
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH---GLP---FMGQ 61

Query: 104 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 159
             L     + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + +
Sbjct: 62  MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121

Query: 160 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 218
           +SNPV+    I   + +K       K++G  T+LD +R    ++E LG+D ++V   ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177

Query: 219 GH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 265
            H             AG  I   +   K    FT+E+ + +   ++  G  +++ K   G
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCN--FTEEDKKKIAEDVKTAGATIIKNK---G 232

Query: 266 SATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLG 315
           +    +A +     +  L+           + G  G+ + A        LP       + 
Sbjct: 233 ATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAI------SLP-----SIVN 281

Query: 316 RQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
            +G +E+ Q   L   E   L  + +++   + +
Sbjct: 282 SEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 314

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  129 bits (326), Expect = 2e-34
 Identities = 67/323 (20%), Positives = 111/323 (34%), Gaps = 36/323 (11%)

Query: 46  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 94
            +A+ GAAG I   L        +  +  P+   L L     +     GV  ++   D+ 
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89

Query: 95  AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 153
              +R              +D  ++    PR PGM R  L +IN  I     + +     
Sbjct: 90  YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149

Query: 154 -NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 212
            N  V ++ NP N+   I     K A     K    +T LD  RA   +A   G+    V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206

Query: 213 DVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 265
               + G+   T +P           VK     T+   E  T  +Q  G  +++   G  
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265

Query: 266 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ-----VTELPFFASKVRLGRQGAE 320
           SA  S A +      + +       G      V +      + E   F+   R    G  
Sbjct: 266 SA-ASTAVSIADAIKSLVTP--TPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDY 322

Query: 321 EIFQLGPLNEYERIGLEKAKKEL 343
           E+      +++    ++K++ EL
Sbjct: 323 ELATDVSNDDFLWERIKKSEAEL 345

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  126 bits (319), Expect = 6e-34
 Identities = 82/321 (25%), Positives = 128/321 (39%), Gaps = 35/321 (10%)

Query: 46  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----G 94
           +VA+ GAAG IG  L        ML K  P++  L L ++        +   M+      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKA-LEGVVMELEDCAF 62

Query: 95  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 154
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122

Query: 155 AT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD 213
              V ++ NP N+   IA    K A   +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179

Query: 214 VPVVGGHAGVTILPLLSQV----KPPCSFTQEE--TEYLTNRIQNGGTEVVEAKAGAGSA 267
              V G+   T+ P L       +P       E   +     +   G  +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238

Query: 268 TLSMAYAAVK-FADACLRGLRGDAGVVECAFVASQ----VTELPFFASKVRLGRQGAEEI 322
             S A AA++   D  L    GD   V  A V SQ    + E   ++  V   + GA  +
Sbjct: 239 -ASAANAAIEHIRDWALGTPEGD--WVSMA-VPSQGEYGIPEGIVYSFPVT-AKDGAYRV 293

Query: 323 FQLGPLNEYERIGLEKAKKEL 343
            +   +NE+ R  +E   +EL
Sbjct: 294 VEGLEINEFARKRMEITAQEL 314

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  125 bits (316), Expect = 1e-33
 Identities = 55/321 (17%), Positives = 108/321 (33%), Gaps = 46/321 (14%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTGAVVRGFLGQP 104
           K+ ++G  G +G    + +    +   L L D+   T G T D+   +   V        
Sbjct: 16  KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEIS----- 69

Query: 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 164
           +  +A     +VI           +  D+   N  + R L   +     ++ + + S P 
Sbjct: 70  KDLSASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP- 127

Query: 165 NSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 223
              V I   V  K  T+   +++G+   LD  R    +  VL       +V V+G   G 
Sbjct: 128 ---VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GE 183

Query: 224 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 283
             +   S  +         +     ++ N   E++  K   G  + S+  +     D+ +
Sbjct: 184 DKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVK---GQRSWSVGLSVADMVDSIV 234

Query: 284 RG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE- 332
                        +G   +    F++     LP       LG  G  E+ +   L E   
Sbjct: 235 NNKKKVHSVSALAKGYYDINSEVFLS-----LP-----CILGTNGVSEVIKT-TLKEDTV 283

Query: 333 RIGLEKAKKELAGSIQKGISF 353
              L+ +   +   +Q+ +  
Sbjct: 284 TEKLQSSASSIHS-LQQQLKL 303

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  124 bits (315), Expect = 2e-33
 Identities = 73/326 (22%), Positives = 123/326 (37%), Gaps = 48/326 (14%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           KV ++G  G +G   A  + +    S L L D           DI+H             
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHA------APVSHG 54

Query: 104 PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 159
            ++     + L    +VI+ AG  +KPG +R DL   NA I R L   I +  P+A + +
Sbjct: 55  TRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV 114

Query: 160 ISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 217
            SNPV+    +  ++  +     P   ++G  T+LD  R    +A+  G+D       V+
Sbjct: 115 TSNPVD----LLTDLATQ---LAPGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167

Query: 218 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 264
           G H             AG+ +   +     P  + ++    +    +N    ++E K   
Sbjct: 168 GEHGDSEVLAWSSAMVAGMPVADFMQAQNLP--WNEQVRAKIDEGTRNAAASIIEGK--- 222

Query: 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASK-VRLGRQGAEEIF 323
            +    +  A  +  +A LR  R          V++   E     S    +GRQG     
Sbjct: 223 RATYYGIGAALARITEAVLRDRR------AVLTVSAPTPEYGVSLSLPRVVGRQGVLSTL 276

Query: 324 QLGPLNEYERIGLEKAKKELAGSIQK 349
               L   E+  LE++   L G  Q+
Sbjct: 277 HP-KLTGDEQQKLEQSAGVLRGFKQQ 301

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  125 bits (315), Expect = 3e-33
 Identities = 75/324 (23%), Positives = 116/324 (35%), Gaps = 39/324 (12%)

Query: 46  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 92
           +VA+ GAAG I   L        ML K  P++  L L ++ N        GV  +I   D
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62

Query: 93  TGA-VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 151
               ++ G         A    D+ ++    PR PGM R DL   NA I     + I   
Sbjct: 63  CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122

Query: 152 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPR 210
              N  V ++ NP N+   IA    K A +   K    +  LD  RA + +A   G    
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179

Query: 211 DVDVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 263
            ++   V G+   T+             VK   +      +     +   G  +++A+ G
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-G 238

Query: 264 AGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ----VTELPFFASKVRLGRQGA 319
             SA  S A AA+      + G  G         + S     + E   F   V     G 
Sbjct: 239 VSSA-ASAANAAIDHIHDWVLGTAGK--WTTMG-IPSDGSYGIPEGVIFGFPVTTEN-GE 293

Query: 320 EEIFQLGPLNEYERIGLEKAKKEL 343
            +I Q   ++ + +  +     EL
Sbjct: 294 YKIVQGLSIDAFSQERINVTLNEL 317

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  122 bits (309), Expect = 1e-32
 Identities = 68/322 (21%), Positives = 131/322 (40%), Gaps = 50/322 (15%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+  +GA G +G   A    +N  V  + L D+      G   D++H    A        
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH---AAAGIDK--Y 55

Query: 104 PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
           P++        L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + 
Sbjct: 56  PKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKIL 115

Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 217
           +++NP++    +   +  K       ++ G+   LD  R    +      + R     ++
Sbjct: 116 VVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNIRRAW--II 169

Query: 218 GGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK 277
           G H G ++    S         + + E + N ++    EV++ K   G+     A A  +
Sbjct: 170 GEH-GDSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR 222

Query: 278 FADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGP 327
              A +            L+G+ G+                    +LG+ GA E+  +  
Sbjct: 223 MVKAVVEDTGEIIPTSMILQGEYGIENV-----------AVGVPAKLGKNGA-EVADI-K 269

Query: 328 LNEYERIGLEKAKKELAGSIQK 349
           L++ E   L  + K L   +++
Sbjct: 270 LSDEEIEKLRNSAKILRERLEE 291

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  119 bits (302), Expect = 2e-31
 Identities = 61/324 (18%), Positives = 112/324 (34%), Gaps = 42/324 (12%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           K+ I+G  G +G  +A  +    +       D           D             L  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDA------MANLEA 55

Query: 104 PQLENA-----LTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPN 154
                      L   D+VI   G  +     P   R       + +V+++   + +   +
Sbjct: 56  HGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH 115

Query: 155 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 213
             + +ISNPV+    +   +F+    +   K++G  T+LD  R    V E   LDPR V 
Sbjct: 116 GVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVS 171

Query: 214 VPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN---RIQNGGTEVVEAKAGAGS 266
              +G H G +     S V    +P  +        L       + GG  V+  K   G 
Sbjct: 172 GYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GY 227

Query: 267 ATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASK-VRLGRQGAEEIFQL 325
            +  +A +A++ A A +              V+++  ++  + S    +GR G      L
Sbjct: 228 TSYGVATSAIRIAKAVMADAH------AELVVSNRRDDMGMYLSYPAIIGRDGVLAETTL 281

Query: 326 GPLNEYERIGLEKAKKELAGSIQK 349
             L   E+  L +++  +     +
Sbjct: 282 -DLTTDEQEKLLQSRDYIQQRFDE 304

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  119 bits (300), Expect = 4e-31
 Identities = 64/332 (19%), Positives = 115/332 (34%), Gaps = 48/332 (14%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+ ++G    +G   A+ + +  L   + L DV+     G   D+ H   G++   FL  
Sbjct: 23  KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEH---GSL---FLHT 75

Query: 104 PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
            ++      +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+    
Sbjct: 76  AKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKE 135

Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 217
           L             +   K       +++G    LD  R    + E LG+    V   V+
Sbjct: 136 LHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVI 191

Query: 218 GGHAGVTILPLLSQV---KPPCSF--TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 272
           G H G ++  + S +   K       +  E   L          VV       +      
Sbjct: 192 GQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKG 250

Query: 273 YAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAE-E 321
            +    A   ++           ++   G+ +  F++     LP       L    +   
Sbjct: 251 CSVADLAQTIMKDLCRVHPVSTMVKDFYGIKDNVFLS-----LP-----CVLNNGISHCN 300

Query: 322 IFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
           I ++  L   E   L+K+   L   IQK + F
Sbjct: 301 IVKM-KLKPDEEQQLQKSATTLW-DIQKDLKF 330

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 53.3 bits (127), Expect = 5e-08
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)

Query: 43  AGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTG 94
              K+ I+GA G        ++ L K   L  S + L D+    ++     A     + G
Sbjct: 2   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60

Query: 95  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 143
           A ++ F     L++ +   D VI  A V     + +        G  R            
Sbjct: 61  ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119

Query: 144 ---------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 188
                          +   I K  P A     +NP+         +  +     P K +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTV---PIKAVG 172

Query: 189 VTMLDVVRANTFVAEVLGLDPRDVDVPVVG 218
                       + E LGL+   VD  V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 28/204 (13%)

Query: 43  AGFKVAILGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVR 98
              K+A +G  G  G     ++ L     +   + LYD+          I +       R
Sbjct: 4   DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR 62

Query: 99  GFLGQPQLENALTGMDLVIIPAGV------------PRKPGMTRDDLFNINAG------- 139
            +     L+ AL+  D+VII                P + G+ +     +  G       
Sbjct: 63  -YEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLR 121

Query: 140 ---IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR 196
              I   +   I    P + V   +NP++    +  +VF           +  T   +  
Sbjct: 122 AVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAE 181

Query: 197 ANTFVAEVLGLDPRDVDVPVVGGH 220
             T    +      D+ V V+G +
Sbjct: 182 MVTERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 39/251 (15%), Positives = 75/251 (29%), Gaps = 42/251 (16%)

Query: 32  RQAKCRAKGGAAGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPG 83
                ++      F + I G  G    P   L +L  +    +  L LYD      +   
Sbjct: 16  ENLYFQSNMKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA 74

Query: 84  VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT 143
              D+   +    +  F      E A T +D V+    V +      D+   +  G+V  
Sbjct: 75  GACDVFIREKAPDIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQ 133

Query: 144 --------------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 183
                               + + + K  P+A +   SNP          +         
Sbjct: 134 ETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN------ 187

Query: 184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 243
            K+L +  +  V     +A++LGL  R     +   + G+      + ++       +  
Sbjct: 188 SKILNICDM-PVGIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQDQE--GNDLM 241

Query: 244 EYLTNRIQNGG 254
             L   +   G
Sbjct: 242 PKLKEHVSQYG 252

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 37/204 (18%)

Query: 44  GFKVAILGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTG 94
             K+A +G        + + L       P V  L L D+         +  +     +  
Sbjct: 7   RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65

Query: 95  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 143
            V            AL G D V     V       +D+   +  G++             
Sbjct: 66  GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125

Query: 144 ---------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 194
                    +   + + CP+A +   +NP            K+      +K++G+  +  
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ------EKVVGLCNV-P 178

Query: 195 VRANTFVAEVLGLDPRDVDVPVVG 218
           +     VA++LG+D   V +   G
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAG 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 47/316 (14%), Positives = 82/316 (25%), Gaps = 109/316 (34%)

Query: 9   QRIARISAHLYPPNLQMEEN-----------SCLRQAKCRAKG--GAAGFKVAILGAAGG 55
           Q   ++   L    L+  +N           + +    C +        FK+  L     
Sbjct: 135 QPYLKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KN 191

Query: 56  IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--------DTGAVVRGFLGQPQLE 107
              P  +L  +  L+  +        P  T+   H            A +R  L     E
Sbjct: 192 CNSPETVLEMLQKLLYQI-------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 108 NALTGMD-----------------LVIIPAGVPRKPGMTRD----DLFNINAGIVRTLCE 146
           N L  +                  L+            TR     D  +       +L  
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLT-----------TRFKQVTDFLSAATTTHISLDH 293

Query: 147 GIAKCCPNATVNLISN---------P--VNSTVP-----IAAEVFKKAGTYDP------K 184
                 P+   +L+           P  V +T P     IA  +     T+D        
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 185 KL-----LGVTMLD--VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLL-SQVKPPC 236
           KL       + +L+    R   F    L + P    +P         +L L+   V    
Sbjct: 354 KLTTIIESSLNVLEPAEYRKM-FDR--LSVFPPSAHIP-------TILLSLIWFDVIK-- 401

Query: 237 SFTQEETEYLTNRIQN 252
                +   + N++  
Sbjct: 402 ----SDVMVVVNKLHK 413

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 51/297 (17%), Positives = 85/297 (28%), Gaps = 90/297 (30%)

Query: 2   EFSSEANQRIARISAHLYPP-NLQMEE-----NSCLRQAKCRAKGGAAGFKVAILGAAGG 55
            +  + + R+      ++   N+   +        L + +  AK       V I G   G
Sbjct: 111 MYIEQRD-RLYN-DNQVFAKYNVSRLQPYLKLRQALLELR-PAKN------VLIDGV-LG 160

Query: 56  IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF---LGQPQLENALTG 112
            G       K     + + L DV  +  V      MD       F   L        +  
Sbjct: 161 SG-------K-----TWVAL-DVCLSYKV---QCKMDFKI----FWLNLKNCNSPETVLE 200

Query: 113 M--DL--VIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 166
           M   L   I P    R       +  + +I A + R L     K   N    L+   V +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCL--LVLLNVQN 255

Query: 167 TVPIAAEVFKKAGTYDPK-KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 225
                A+ +     ++   K+L +T        T          R   V      A  T 
Sbjct: 256 -----AKAWN---AFNLSCKIL-LT--------T----------RFKQVTDFLSAATTTH 288

Query: 226 LPLLSQVKPPCSFTQEETE-----YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK 277
           + L        + T +E +     YL  R Q       E         LS+   +++
Sbjct: 289 ISL---DHHSMTLTPDEVKSLLLKYLDCRPQ---DLPREVLTTNPRR-LSIIAESIR 338

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	100.0
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.98
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.97
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.76
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.48
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.39
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.24
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.24
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.23
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.23
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.22
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.22
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.19
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.18
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.18
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.18
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.17
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.14
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.12
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.12
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.11
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.11
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.11
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.1
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.1
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.1
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.1
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.09
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.09
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.08
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.06
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.06
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.06
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.03
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.02
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.02
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.02
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.01
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.99
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.99
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	97.99
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.98
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	97.98
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	97.97
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.96
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	97.96
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	97.94
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	97.94
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.92
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.91
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.9
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.9
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	97.89
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	97.89
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.88
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	97.88
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.88
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	97.85
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.84
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.84
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.83
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	97.83
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.82
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	97.81
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	97.8
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	97.8
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.78
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.77
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.77
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	97.76
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.76
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.76
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.75
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.75
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.74
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.74
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	97.74
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.72
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.72
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.72
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.72
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.71
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.7
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.69
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	97.69
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.68
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.68
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.68
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.67
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.67
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	97.67
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.66
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	97.66
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.65
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	97.63
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.63
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.63
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.63
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.61
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.61
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.61
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.59
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.59
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	97.58
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	97.57
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.57
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.57
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.57
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.57
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	97.56
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.55
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	97.55
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	97.53
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.53
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.52
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.52
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.51
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.51
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.51
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.51
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	97.51
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	97.49
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.49
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.49
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.49
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	97.49
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.48
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.48
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.47
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.46
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.46
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	97.46
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.44
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.44
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.44
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	97.44
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.44
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.44
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	97.43
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.43
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.42
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.42
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.42
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.42
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	97.4
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.4
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.4
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.39
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.38
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	97.38
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.37
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.37
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.37
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.36
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.36
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.36
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.36
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.35
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.35
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.34
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.34
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.34
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.32
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.32
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.32
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.3
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.3
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.29
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.28
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.28
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.28
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.27
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.27
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.27
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.26
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.26
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.26
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.26
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.25
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.25
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.25
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.25
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.25
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.24
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.24
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.24
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.23
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.23
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.23
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.23
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.21
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	97.21
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.21
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.21
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.2
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.2
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.2
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.19
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.19
1spx_A	278	Short-chain reductase family member (5L265); paral	97.19
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.19
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.19
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.18
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.18
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.18
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.18
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.17
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.17
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.17
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	97.17
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.16
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.16
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.15
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.15
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.15
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.14
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.14
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.14
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.13
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.13
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.13
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.13
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.13
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.12
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.12
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.12
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.12
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.11
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.11
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.1
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.1
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.09
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.09
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.08
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.08
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.08
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.08
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.07
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.07
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.07
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.06
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.06
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.06
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.06
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.06
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.06
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.05
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.05
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.04
4f6l_B	508	AUSA reductase domain protein; thioester reductase	97.04
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.04
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.04
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.03
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.03
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.03
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.03
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.03
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.02
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.02
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.02
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.01
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.01
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.01
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.0
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.0
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.0
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.99
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.99
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.99
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.99
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.99
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.98
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.98
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	96.97
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.97
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.97
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.97
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.97
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.97
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.97
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.96
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.96
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.96
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.95
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.95
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.95
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.94
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.93
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.93
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.93
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.92
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.92
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.91
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.91
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.9
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.89
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.89
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.88
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.88
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.87
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.87
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.87
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.87
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.87
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.86
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.86
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.85
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.85
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.85
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.85
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.84
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.84
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.84
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.84
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.83
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.82
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.81
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.81
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.8
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.8
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.8
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.8
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.79
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.78
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.77
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.77
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.77
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.77
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.77
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.76
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.76
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.75
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.75
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.75
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.74
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.72
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.71
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.7
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.69
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.69
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.67
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.66
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.66
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.66
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.66
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.64
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.63
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.62
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.62
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.62
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.61
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.6
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.6
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.59
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.54
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.53
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.53
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.52
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.51
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.5
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.49
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.48
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.48
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.47
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.46
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.46
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.42
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.4
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.4
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.4
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.39
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.36
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.33
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.31
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.31
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.3
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.25
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.25
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.24
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.21
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.2
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.2
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.19
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.17
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.17
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.11
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.09
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.07
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.05
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.05
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.05
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.03
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.01
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.01
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.91
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	95.91
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	95.9
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.88
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	95.83
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.81
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.81
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.8
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.8
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.79
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.79
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.79
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.78
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.78
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.76
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.75
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.72
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.65
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.65
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.64
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.63
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	95.62
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.62
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.59
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.56
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.54
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.53
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	95.51
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.48
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.47
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.47
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	95.46
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	95.44
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.4
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.38
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	95.38
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	95.37
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	95.35
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.34
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.31
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	95.28
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	95.27
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.19
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.16
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.16
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.15
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	95.15
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.14
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.12
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.07
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.07
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	95.03
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.0
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	94.98
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	94.97
4hb9_A	412	Similarities with probable monooxygenase; flavin,	94.96
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.96
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	94.96
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	94.94
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	94.93
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	94.87
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	94.85
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.85
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	94.84

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=1.9e-66  Score=496.70  Aligned_cols=308  Identities=54%  Similarity=0.844  Sum_probs=274.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      |||+||||+|+||+++++.|+.+ ++.+||+|+|+++ +.|.++||+|......+..+.+ ++.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECS-SCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecC-CCcHHHhCCCCEEEEeCCC
Confidence            79999996699999999999887 7888999999987 7899999999854344554432 3446899999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC-CCCCEEEechhhHHHHHHHH
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY-DPKKLLGVTMLDVVRANTFV  201 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~-~~~kviG~t~ld~~R~~~~l  201 (356)
                      ||+|||+|+|++.+|+++++++++.|.++||+++++++|||+|++|++++++ ++.+|+ |++||+|+|.||+.|+++++
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~-~k~sg~~p~~rv~G~~~LD~~R~~~~l  158 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEV-LKKAGVYDKNKLFGVTTLDIIRSNTFV  158 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHH-HHHTTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHH-HHHcCCCCcceEEEEechhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987665 455677 99999999999999999999


Q ss_pred             HHHhCCCCCCCcccEEecc-cCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHH
Q 018433          202 AEVLGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD  280 (356)
Q Consensus       202 a~~l~v~~~~v~~~viG~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~  280 (356)
                      |+++|+++++|+++||||| |+ ++||+||++ .+.++++++|++|.++|+++|++|++.|.|+|+++||+|.|++++++
T Consensus       159 a~~lgv~~~~v~~~V~G~Hsg~-t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~  236 (312)
T 3hhp_A          159 AELKGKQPGEVEVPVIGGHSGV-TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGL  236 (312)
T ss_dssp             HHHHTCCGGGCCCCEEECSSGG-GEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHhCcChhHcceeEEeccCCC-ceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHH
Confidence            9999999999999999999 66 999999998 33357888999999999999999999766679999999999999999


Q ss_pred             HHHcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 018433          281 ACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK  356 (356)
Q Consensus       281 ai~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~~  356 (356)
                      +|+.+.++++.++|+++++|+.+.++|||+||++|++|+++++++++|+++|+++|++|++.|+++++++++|+++
T Consensus       237 ai~~~l~~~~~v~~~s~~~g~g~~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~i~~g~~~~~~  312 (312)
T 3hhp_A          237 SLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_dssp             HHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCCCceEEEEEecCCCCcceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9943333344588988888764568999999999999999999966999999999999999999999999999864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=5.4e-65  Score=488.05  Aligned_cols=311  Identities=57%  Similarity=0.938  Sum_probs=286.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||+||||+|+||+++++.|+..++..||+|+|+++.++.++||.|.....+++.+.+++|+++|++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999998899999999999988888899999998878899999998654456654334688889999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHH
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  204 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~  204 (356)
                      ++|++|.|++.+|+++++++++.|.+++|++|+|++|||+|++|+++++++++.++||++||||+|.||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888899999999999999999999999999999


Q ss_pred             hCCCCCCCcccEEecc-cCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHHHHH
Q 018433          205 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL  283 (356)
Q Consensus       205 l~v~~~~v~~~viG~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~ai~  283 (356)
                      +|++|++|+++||||| |+ +++|+||++++...+++++++++.+++++++++|++.+.|+|+++||+|.++++++++|+
T Consensus       161 l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~  239 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGK-TIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV  239 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCC-cEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 77 899999999864458888899999999999999999887889999999999999999999


Q ss_pred             cCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 018433          284 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK  356 (356)
Q Consensus       284 ~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~~  356 (356)
                      +|+++++.++++++++|+|++|+|||+||++|++|+++++++++|+++|+++|++|++.|++.++++++|+++
T Consensus       240 ~~~~g~~~v~~~~~~~g~y~~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~l~~~~~~~~~~~~~  312 (314)
T 1mld_A          240 DAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKN  312 (314)
T ss_dssp             HHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCcCCCcceEEEEEeCCccCCceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9976444588888899999889999999999999999998855999999999999999999999999998763

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=4.3e-65  Score=490.49  Aligned_cols=297  Identities=23%  Similarity=0.376  Sum_probs=265.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCC-eEEEEeCCCChhhhhCCCcEEE
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      ..+.+||+|||| |.||+++++.|+.+++++||+|+|+++  ++|+++||+|+..+. ..... .++|+ ++++|||+||
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~~~d~-~~~~~aDiVv   92 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIV-SSKDY-SVTANSKLVI   92 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEE-ECSSG-GGGTTEEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEE-EcCCH-HHhCCCCEEE
Confidence            356789999999 999999999999999999999999987  799999999985222 22222 25676 6899999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHH
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  196 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R  196 (356)
                      +++|.|++|||+|+|++.+|+++++++++.|.++||++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|
T Consensus        93 i~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~----~k~sg~p~~rviG~gt~LD~~R  168 (331)
T 4aj2_A           93 ITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA----WKISGFPKNRVIGSGCNLDSAR  168 (331)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHH
T ss_pred             EccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHHhCCCHHHEEeeccccHHHH
Confidence            999999999999999999999999999999999999999999999999997654    67789999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccC
Q 018433          197 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGA  264 (356)
Q Consensus       197 ~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gk  264 (356)
                      +++++|+++|+++++|+++||||||+ ++||+||++++.+            .+++++|++|.++++++|++|++.   |
T Consensus       169 ~~~~la~~lgv~~~~V~~~ViGeHG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---k  244 (331)
T 4aj2_A          169 FRYLMGERLGVHPLSCHGWVLGEHGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL---K  244 (331)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHhCCCHHHCEEeEEecCCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhc---C
Confidence            99999999999999999999999999 9999999998632            235667999999999999999995   4


Q ss_pred             CcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHH
Q 018433          265 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKK  341 (356)
Q Consensus       265 g~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~  341 (356)
                      |+++||+|.++++++++|++|.+   .++|++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|++|++
T Consensus       245 g~t~~a~a~a~a~~~~ail~d~~---~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~  320 (331)
T 4aj2_A          245 GYTSWAIGLSVADLAESIMKNLR---RVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSAD  320 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECC-CCCHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhCCC---CeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccC-CCCHHHHHHHHHHHH
Confidence            78999999999999999999865   588887 789998  57999999999999999999995 999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 018433          342 ELAGSIQKGISF  353 (356)
Q Consensus       342 ~l~~~~~~~~~~  353 (356)
                      .|++ ++++++|
T Consensus       321 ~l~~-~~~~~~~  331 (331)
T 4aj2_A          321 TLWG-IQKELQF  331 (331)
T ss_dssp             HHHH-HHTTCCC
T ss_pred             HHHH-HHhhcCC
Confidence            9998 5565553

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=2.5e-64  Score=477.58  Aligned_cols=282  Identities=23%  Similarity=0.364  Sum_probs=255.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC----CCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      |||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+..    .+.+..   ++|+ ++++|||+||+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~---~~d~-~~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GADY-SLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec---CCCH-HHhCCCCEEEE
Confidence            89999998 999999999999999999999999988  7999999999642    233332   4575 78999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      +||.||+|||+|+|++..|++++++++++|.++||+++++++|||+|++|+++    ++.+|+|++|+||+ |.||++||
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~----~k~sg~p~~rvig~gT~LDs~R~  151 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSSCCTTSEEECCHHHHHHHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhh----HHHcCCChhhEEEeeeEEeHHHH
Confidence            99999999999999999999999999999999999999999999999998764    77899999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHH
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK  277 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~  277 (356)
                      ++++++.+++++.  +++|||+||+ +++|+||++++.+.   .+++++.++++.++++|++.   ||+++||+|.++++
T Consensus       152 ~~~l~~~~~~~~~--~~~V~G~HGd-t~vp~~S~~~v~g~---~~~~~i~~~~~~~g~eIi~~---kGst~~a~a~a~~~  222 (294)
T 2x0j_A          152 KERLYNAGARNIR--RAWIIGEHGD-SMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHHHTTCEEEC--CCCEEBCSST-TCEECGGGCCEESC---CCHHHHHHHHHTHHHHHHHH---HSSCCHHHHHHHHH
T ss_pred             HHHHhhcccCCcc--eeEEEecCCC-cEEEeeeccCCCCc---hhHHHHHHHHhhhheEEEec---CcccchhHHHHHHH
Confidence            9999999987654  7899999999 99999999987432   34678888999999999994   58999999999999


Q ss_pred             HHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018433          278 FADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  349 (356)
Q Consensus       278 li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~  349 (356)
                      ++++|++|++   .++|++ +++|+| .+++|||+||++|++|+ +++++ +|+++|+++|++|++.||+.+++
T Consensus       223 ~~~ail~d~~---~v~~~s~~l~g~yG~~~v~~s~P~~lg~~Gv-ei~~l-~L~~~E~~~l~~s~~~lk~~i~~  291 (294)
T 2x0j_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGA-EVADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEE-EECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCC---cEEEEEEEEecCCCCccEEEEEEEEEeCCEE-EEeCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999865   489997 789999 78999999999999998 48885 99999999999999999998875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=9.1e-63  Score=473.34  Aligned_cols=298  Identities=32%  Similarity=0.494  Sum_probs=269.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC----CCeEEEEeCCCChhhhhCCCcE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDL  115 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~al~~aDi  115 (356)
                      ++.+||+|||| |.+|+++++.|+..++. +|+|+|+++  +++.++||.|...    ...+..   ++|+ ++++|||+
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d~-~a~~~aDv   76 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TNDY-KDLENSDV   76 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCCH-HHHCCCCE
Confidence            34679999998 99999999999999887 999999988  6789999999742    234443   3565 89999999


Q ss_pred             EEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec-hhhH
Q 018433          116 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDV  194 (356)
Q Consensus       116 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t-~ld~  194 (356)
                      ||+++|.|++||++|.|++.+|+++++++++.|.++||++++|++|||+|++|+++    ++.+++|++||+|+| .||+
T Consensus        77 VIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~LD~  152 (321)
T 3p7m_A           77 VIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNML----QKFSGVPDNKIVGMAGVLDS  152 (321)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEECHHHHH
T ss_pred             EEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHhcCCCHHHEEeeccchHH
Confidence            99999999999999999999999999999999999999999999999999998654    677899999999996 9999


Q ss_pred             HHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhccC
Q 018433          195 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGA  264 (356)
Q Consensus       195 ~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gk  264 (356)
                      .|+++++|+++|+++++|+++||||||+ ++||+||++++.+          .+++++++++.++++++|++|++.+ |+
T Consensus       153 ~R~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~  230 (321)
T 3p7m_A          153 ARFRTFLADELNVSVQQVQAYVMGGHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KT  230 (321)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHhCcCHHHceEeeecCcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CC
Confidence            9999999999999999999999999998 9999999998742          1467788999999999999999987 88


Q ss_pred             CcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eec-CCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 018433          265 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVA-SQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK  340 (356)
Q Consensus       265 g~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~-g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa  340 (356)
                      |+++||+|.|+++++++|++|++   .++|++ +++ |+|  ++|+|||+||++|++|++++ ++ +|+++|+++|++|+
T Consensus       231 gsa~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l-~L~~~E~~~l~~s~  305 (321)
T 3p7m_A          231 GSAYYAPAAAGIQMAESFLKDKK---MILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EV-EISDKEREQLQVSI  305 (321)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CC-CCCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCC---cEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CC-CCCHHHHHHHHHHH
Confidence            99999999999999999999864   589998 788 898  56999999999999999999 85 99999999999999


Q ss_pred             HHHHHHHHHhhhhhcC
Q 018433          341 KELAGSIQKGISFSKK  356 (356)
Q Consensus       341 ~~l~~~~~~~~~~~~~  356 (356)
                      +.|++.++....++.|
T Consensus       306 ~~l~~~~~~~~~~l~~  321 (321)
T 3p7m_A          306 NAIKDLNKAAAEILAK  321 (321)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999988777654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=4e-64  Score=481.02  Aligned_cols=297  Identities=26%  Similarity=0.462  Sum_probs=261.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||| |.||+++++.|+..+++++|+|+|+++  ++|.++||+|+.+  ....+.. ++++ +++++|||+||+++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~-~~~~-~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVT-GTND-YGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEE-EESS-SGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEE-ECCC-HHHhCCCCEEEECC
Confidence            79999998 999999999999999989999999988  7899999999742  1223332 1244 58999999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec-hhhHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANT  199 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t-~ld~~R~~~  199 (356)
                      |.|++||++|.|++.+|+++++++++.|.++||++|++++|||+|++|+++    ++.+|||++||||+| .||+.|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~~g~p~~rviG~~t~LD~~R~~~  153 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA----YEASGFPTNRVMGMAGVLDTGRFRS  153 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH----HHHHTCCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH----HHhcCCChHHEEeecCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999998765    567899999999995 999999999


Q ss_pred             HHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----CCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHH
Q 018433          200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA  274 (356)
Q Consensus       200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a  274 (356)
                      ++|+++|+++++|+++||||||+ ++||+||++++.+     .+++++++++.++++++|++|++.| |+ +++||+|.+
T Consensus       154 ~la~~lgv~~~~v~~~ViG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a~a  230 (314)
T 3nep_X          154 FIAEELDVSVRDVQALLMGGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPGAA  230 (314)
T ss_dssp             HHHHHHTCCGGGEEEEEEESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHHHH
T ss_pred             HHHHHhCcCHHHeEEEEECCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHHHH
Confidence            99999999999999999999999 9999999998743     2466778999999999999999977 44 899999999


Q ss_pred             HHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 018433          275 AVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS  352 (356)
Q Consensus       275 ~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~  352 (356)
                      +++++++|++|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++...
T Consensus       231 ~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~lg~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~~~  306 (314)
T 3nep_X          231 AAEMTEAILKDNK---RILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAGHVHSNLDDLQR  306 (314)
T ss_dssp             HHHHHHHHHHTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC---eEEEEEEEeccccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999854   588987 889999 67999999999999999999996 99999999999999999999998876


Q ss_pred             hhc
Q 018433          353 FSK  355 (356)
Q Consensus       353 ~~~  355 (356)
                      +++
T Consensus       307 ~l~  309 (314)
T 3nep_X          307 LRD  309 (314)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=2.8e-64  Score=483.89  Aligned_cols=293  Identities=22%  Similarity=0.372  Sum_probs=246.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      ..++||+|||| |.||+++++.|+..+++++|+|+|+++  ++|+++||.|+... ..++..  +++ +++++|||+||+
T Consensus         7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~--~~~-~~a~~~aDiVvi   82 (326)
T 3vku_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY--SAE-YSDAKDADLVVI   82 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE--ECC-GGGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEE--ECc-HHHhcCCCEEEE
Confidence            35679999998 999999999999999999999999987  78999999998532 344443  245 588999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      ++|.|++|||+|+|++.+|+++++++++.|.++||++|++++|||+|++|+++    ++.++||++||||+ |.||+.|+
T Consensus        83 ~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~----~k~~g~p~~rviG~gt~LD~~R~  158 (326)
T 3vku_A           83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTARF  158 (326)
T ss_dssp             CCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHH----HHhcCCCHHHeeeecccCcHHHH
Confidence            99999999999999999999999999999999999999999999999997654    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-C----------CCHHHHHHHHHHHhcchhHHHhhhccCCc
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  266 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  266 (356)
                      ++++|+++|+++++|+++||||||+ ++||+||++++.+ +          +++++++++.++|+++|++|++.   ||+
T Consensus       159 ~~~la~~lgv~~~~V~~~ViGeHGd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG~  234 (326)
T 3vku_A          159 RQSIAKMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKL---KGA  234 (326)
T ss_dssp             HHHHHHHHTSCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHH---HSC
T ss_pred             HHHHHHHhCCCHHHCeEEEEcCCCC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc---CCC
Confidence            9999999999999999999999999 9999999998743 1          14667899999999999999994   589


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433          267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  344 (356)
Q Consensus       267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~  344 (356)
                      |+||+|.++++++++|++|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       235 t~~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~sa~~L~  310 (326)
T 3vku_A          235 TFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK  310 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEEEGGGEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhcCCC---ceEEEEeeccCccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999854   588986 889999 56999999999999999999995 999999999999999999


Q ss_pred             HHHHHh
Q 018433          345 GSIQKG  350 (356)
Q Consensus       345 ~~~~~~  350 (356)
                      +.+++.
T Consensus       311 ~~~~~~  316 (326)
T 3vku_A          311 KVLTDA  316 (326)
T ss_dssp             CC----
T ss_pred             HHHHHH
Confidence            888765

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=4.2e-63  Score=475.81  Aligned_cols=298  Identities=31%  Similarity=0.492  Sum_probs=263.6

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC----CCeEEEEeCCCChhhhhCC
Q 018433           39 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTG  112 (356)
Q Consensus        39 ~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~al~~  112 (356)
                      |+.++++||+|||| |++|+++++.|+..++. +|+|+|+++  +++.++|+.|...    ...+..   ++|+ ++++|
T Consensus         2 ~~~m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~   75 (324)
T 3gvi_A            2 PGSMARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEG   75 (324)
T ss_dssp             ----CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTT
T ss_pred             CCCCcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCC
Confidence            56677889999999 99999999999999886 999999988  6788999998742    234443   3676 89999


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec-h
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-M  191 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t-~  191 (356)
                      ||+||+++|.|+++|++|.|++.+|++++++++++|.++||++|+|++|||+|++|+++    ++.+++|++||||+| .
T Consensus        76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~  151 (324)
T 3gvi_A           76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL----QKFSGLPAHKVVGMAGV  151 (324)
T ss_dssp             CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHH
T ss_pred             CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH----HHhcCCCHHHEEeecCc
Confidence            99999999999999999999999999999999999999999999999999999998764    677899999999996 8


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhh
Q 018433          192 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAK  261 (356)
Q Consensus       192 ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~  261 (356)
                      ||+.|+++++|+++|+++++|+++||||||+ ++||+||++++.+          .+++++++++.++++++|++|++++
T Consensus       152 LD~~R~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~  230 (324)
T 3gvi_A          152 LDSARFRYFLSEEFNVSVEDVTVFVLGGHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL  230 (324)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCcCHHHCeEEEEcCCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc
Confidence            9999999999999999999999999999999 9999999998742          1367788999999999999999987


Q ss_pred             ccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 018433          262 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA  339 (356)
Q Consensus       262 ~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~s  339 (356)
                       |+|+++||+|.|+++++++|++|++   .++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|
T Consensus       231 -gkgsa~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s  305 (324)
T 3gvi_A          231 -KTGSAFYAPAASAIQMAESYLKDKK---RVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEI-DLDKDEKAQFDKS  305 (324)
T ss_dssp             -SSCCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHH
Confidence             8899999999999999999999864   589997 789999 56999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 018433          340 KKELAGSIQKGIS  352 (356)
Q Consensus       340 a~~l~~~~~~~~~  352 (356)
                      ++.|++.++....
T Consensus       306 ~~~l~~~~~~~~~  318 (324)
T 3gvi_A          306 VASVAGLCEACIG  318 (324)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=3.8e-62  Score=470.60  Aligned_cols=311  Identities=90%  Similarity=1.354  Sum_probs=283.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..++|||+||||+|+||++++..|+..+++.+|+|+|+++..+.++||.+......+..+.+++|++++++|||+||+++
T Consensus         5 ~~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~a   84 (326)
T 1smk_A            5 GAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA   84 (326)
T ss_dssp             ---CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcC
Confidence            34568999999669999999999998887789999998776778899998754335555434568889999999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF  200 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~  200 (356)
                      |.|+++|++|.+++.+|+++++++++++.+++|++||+++|||+|++|+++++++++.++||++||||+|.||+.|++++
T Consensus        85 g~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~  164 (326)
T 1smk_A           85 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTF  164 (326)
T ss_dssp             CCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHH
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCcccEEecc-cCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHH
Q 018433          201 VAEVLGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA  279 (356)
Q Consensus       201 la~~l~v~~~~v~~~viG~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li  279 (356)
                      +|+++|++|++|+++||||| |+ +++|+||++++...+++++++++.+++++++++|++.|.|+|+++||+|.++++++
T Consensus       165 la~~l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~  243 (326)
T 1smk_A          165 VAEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA  243 (326)
T ss_dssp             HHHHHTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH
T ss_pred             HHHHhCcChhheEEEEecccCCc-eEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Confidence            99999999999999999999 77 99999999988656888889999999999999999976677999999999999999


Q ss_pred             HHH---HcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018433          280 DAC---LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK  355 (356)
Q Consensus       280 ~ai---~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~~~~  355 (356)
                      ++|   ++|++   .++++++++|+|++|+|||+||++|++|+++++++++|+++|+++|++|++.|++.++++.+|.+
T Consensus       244 ~ai~~~~~~~~---~v~~~~~~~g~~~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~~~l~~s~~~l~~~~~~~~~~~~  319 (326)
T 1smk_A          244 DACLRGLRGDA---GVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR  319 (326)
T ss_dssp             HHHHHHHHTCS---CEEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCC---eEEEEEeeccccCCceEEEEEEEEeCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999   88765   48888888998888999999999999999999994499999999999999999999999999875

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=9.8e-63  Score=467.54  Aligned_cols=284  Identities=23%  Similarity=0.352  Sum_probs=257.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||| |++|+++++.|+..+++++|+|+|+++  +++.++|+.|..  .....+.. .++| +++++|||+||+++
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~-~t~d-~~a~~~aDiVViaa   77 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGAD-YSLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE-EESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEE-EeCC-HHHhCCCCEEEECC
Confidence            79999999 999999999999999889999999988  678899999874  22222322 2357 68999999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  199 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~  199 (356)
                      |.|+++|++|.|++.+|++++++++++|.++||++|+|++|||+|++|+++    ++.+|||++||||+ |.||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~~~  153 (294)
T 1oju_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRLKE  153 (294)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEECSHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH----HHhcCCCHHHEeecccccHHHHHHH
Confidence            999999999999999999999999999999999999999999999998654    67899999999999 8999999999


Q ss_pred             HHHHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHH
Q 018433          200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA  279 (356)
Q Consensus       200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li  279 (356)
                      ++| ++|++|++ +++||||||+ ++||+||++++.+ .+  +++++.++++++|++|++.   ||+++||+|.++++++
T Consensus       154 ~la-~l~v~~~~-~~~V~G~Hg~-t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~---kG~t~~~~a~a~~~~~  224 (294)
T 1oju_A          154 RLY-NAGARNIR-RAWIIGEHGD-SMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYRMV  224 (294)
T ss_dssp             HHH-HTTCBSCC-CCCEEBCSST-TCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHH---HSSCCHHHHHHHHHHH
T ss_pred             HHH-HhCCCccC-ceEEEecCCC-ceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHHHHH
Confidence            999 99999999 9999999999 9999999999743 22  6889999999999999995   4799999999999999


Q ss_pred             HHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018433          280 DACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  349 (356)
Q Consensus       280 ~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~  349 (356)
                      ++|++|.+   .++|++ +++|+| .+++|||+||++|++|++ ++++ +|+++|+++|++|++.|++.+++
T Consensus       225 ~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~-v~~l-~L~~~E~~~l~~s~~~l~~~~~~  291 (294)
T 1oju_A          225 KAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             HHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCC---eEEEEEecccccCCCCceEEEEEEEEeCCEEE-EecC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999854   489997 899999 569999999999999999 9995 99999999999999999998875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=2.3e-63  Score=477.97  Aligned_cols=292  Identities=23%  Similarity=0.324  Sum_probs=264.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      +++||+|||| |.||+++++.|+..+++++|+|+|+++  +++.++||+|+...  ..++.+  ++|+ ++++|||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~--~~~~-~a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS--YGTY-EDCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEE--EECG-GGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEE--eCcH-HHhCCCCEEEE
Confidence            4689999998 999999999999999889999999987  78999999998421  244543  2454 78999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      ++|.|+++|++|.|++..|+++++++++.|.++||++|+|++|||+|++|+++    ++.++||++||||+ |.||+.|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT----WKFSGLPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH----HHhcCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999998654    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----C-------CCHHHHHHHHHHHhcchhHHHhhhccCCc
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  266 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~-------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  266 (356)
                      ++++|+++|+++++|+++||||||+ ++||+||++++.+    +       ++++++++|.++|+++|++|++.   ||+
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeHG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG~  231 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEHGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGA  231 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH---HSC
T ss_pred             HHHHHHHhCCCHHHceeeeeecCCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeC---CCC
Confidence            9999999999999999999999999 9999999998743    1       25667899999999999999994   589


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433          267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  344 (356)
Q Consensus       267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~  344 (356)
                      |+||+|.|+++++++|++|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       232 t~~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~~l~  307 (326)
T 3pqe_A          232 TYYGVAMSLARITKAILHNEN---SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITEL-NLNEKEKEQFLHSAGVLK  307 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEECCEEEEESGGGCEEEEEECCEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCCC---cEEEEEEeeccccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999854   588886 889999 66999999999999999999995 999999999999999999


Q ss_pred             HHHHHh
Q 018433          345 GSIQKG  350 (356)
Q Consensus       345 ~~~~~~  350 (356)
                      +.+++.
T Consensus       308 ~~~~~~  313 (326)
T 3pqe_A          308 NILKPH  313 (326)
T ss_dssp             HHHTTT
T ss_pred             HHHHHh
Confidence            988764

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=1.2e-62  Score=471.17  Aligned_cols=291  Identities=29%  Similarity=0.466  Sum_probs=265.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC--C--chhHHHHHhcCC----CCCeEEEEeCCCChhhhhCCCc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--N--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMD  114 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~--~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aD  114 (356)
                      +.+||+|||| |.+|+++++.|+..++ ++|+|+|++  +  ++|.++|+.|..    ....+..   ++|+ ++++|||
T Consensus         7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD   80 (315)
T 3tl2_A            7 KRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG---TSDY-ADTADSD   80 (315)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE---cCCH-HHhCCCC
Confidence            4569999998 9999999999999998 899999998  4  688899999874    2234543   3564 8899999


Q ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhh
Q 018433          115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD  193 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld  193 (356)
                      +||+++|.|++||++|.|++.+|+++++++++.+.++||++|++++|||+|++|+++    ++.+|+|++||||+ |.||
T Consensus        81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~----~k~sg~p~~rviG~gt~LD  156 (315)
T 3tl2_A           81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV----FKEAGFPKERVIGQSGVLD  156 (315)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH----HHhcCCChHHEEeeccCcH
Confidence            999999999999999999999999999999999999999999999999999998865    56789999999999 9999


Q ss_pred             HHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----CCCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433          194 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  268 (356)
Q Consensus       194 ~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  268 (356)
                      +.|+++++|+++|+++++|+++||||||+ ++||+||++++.+     .++++++++|.++|+++|++|++++ |||+++
T Consensus       157 ~~R~~~~la~~lgv~~~~v~~~viG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~  234 (315)
T 3tl2_A          157 TARFRTFIAQELNLSVKDITGFVLGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAY  234 (315)
T ss_dssp             HHHHHHHHHHHHTCCGGGEECCEEBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCC
T ss_pred             HHHHHHHHHHHhCcCHHHceeeEecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcch
Confidence            99999999999999999999999999999 9999999998743     2567788999999999999999974 789999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 018433          269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS  346 (356)
Q Consensus       269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~  346 (356)
                      ||+|.++++++++|++|.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.
T Consensus       235 ~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~  310 (315)
T 3tl2_A          235 YAPAASLVEMTEAILKDQR---RVLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVESVRNV  310 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEeccCccCCCceEEEEEEEEeCCEEEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854   588997 889999 67999999999999999999996 99999999999999999988


Q ss_pred             HHH
Q 018433          347 IQK  349 (356)
Q Consensus       347 ~~~  349 (356)
                      ++.
T Consensus       311 ~~~  313 (315)
T 3tl2_A          311 MKV  313 (315)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.1e-62  Score=472.76  Aligned_cols=299  Identities=26%  Similarity=0.363  Sum_probs=257.7

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEE
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      .|++.+||+||||+|+||+++++.++..++..||+|+|+++  ++|.++||+|+.+. ..+..   ++|++++++|||+|
T Consensus         4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvV   80 (343)
T 3fi9_A            4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYI   80 (343)
T ss_dssp             CCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEE
Confidence            36778899999988999999999999999888999999987  78999999998642 23443   36788999999999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcE-EEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHH
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVV  195 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~-viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~  195 (356)
                      |+++|.|+++|++|.|++.+|+++++++++.|.++||++| ++++|||+|++|+++    ++.+|||++||+|+|.||++
T Consensus        81 vitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~----~k~sg~p~~rv~g~t~LDs~  156 (343)
T 3fi9_A           81 VSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT----LIYSGLKPSQVTTLAGLDST  156 (343)
T ss_dssp             EECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH----HHHHTCCGGGEEEECCHHHH
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH----HHHcCCCcceEEEecCcHHH
Confidence            9999999999999999999999999999999999999996 899999999998875    56678999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCc-ccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhccC
Q 018433          196 RANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGA  264 (356)
Q Consensus       196 R~~~~la~~l~v~~~~v~-~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gk  264 (356)
                      |+++++|+++|++|++|+ ++||||||+ +++|+||++++.+          .+++++|++|.++|+++|++|++.| | 
T Consensus       157 R~~~~la~~l~v~~~~v~~~~ViGeHgd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g-  233 (343)
T 3fi9_A          157 RLQSELAKHFGIKQSLVTNTRTYGGHGE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR-G-  233 (343)
T ss_dssp             HHHHHHHHHHTSCGGGEECCCEEESSGG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH-S-
T ss_pred             HHHHHHHHHhCcCHHHcccceEEEcCCC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc-C-
Confidence            999999999999999996 899999999 9999999998642          1467789999999999999999965 2 


Q ss_pred             CcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCCCCccEEEEeEEEcCCceEEeccCCC-CCHHHHHHHHHHHHH
Q 018433          265 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFASKVRLGRQGAEEIFQLGP-LNEYERIGLEKAKKE  342 (356)
Q Consensus       265 g~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~-L~~~E~~~L~~sa~~  342 (356)
                      .+++||+|.++++++++|++|.+   .++|++ +++|++.+|+|||+||++|++|++.+ .+++ |+++|+++|++|++.
T Consensus       234 ~ss~~s~A~a~~~~~~ail~d~~---~v~~~s~~~~g~~~~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~  309 (343)
T 3fi9_A          234 RSSFQSPSYVSIEMIRAAMGGEA---FRWPAGCYVNVPGFEHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSH  309 (343)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSC---CCSCEEEEEEETTEEEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHH
T ss_pred             CCcHHhHHHHHHHHHHHHHhCCC---ceEEEEEEEeCCCcCceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHH
Confidence            24467999999999999999976   366765 88887778999999999999999976 4323 899999999999999


Q ss_pred             HHHHHHHhhh
Q 018433          343 LAGSIQKGIS  352 (356)
Q Consensus       343 l~~~~~~~~~  352 (356)
                      |++.++....
T Consensus       310 l~~~~~~~~~  319 (343)
T 3fi9_A          310 LAKLRDEVIA  319 (343)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887754

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=4.1e-61  Score=464.68  Aligned_cols=308  Identities=23%  Similarity=0.311  Sum_probs=250.7

Q ss_pred             hhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCC
Q 018433           34 AKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQP  104 (356)
Q Consensus        34 ~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~  104 (356)
                      +.++.++.+++.||+|+||+|+||+++++.|++++++.     ||+|+|+++    ++|.++||+|+.+......+. ++
T Consensus        14 ~~~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~~   92 (345)
T 4h7p_A           14 AQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-TA   92 (345)
T ss_dssp             --------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-ES
T ss_pred             ccccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-cC
Confidence            55888999999999999999999999999999987654     999999986    478999999997655545443 35


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      |.+++++|||+||+++|.||||||+|.|++..|+++++++++.|.++| |+++|+++|||+|++++++.   ++.+|+|+
T Consensus        93 ~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~---~~~~g~~~  169 (345)
T 4h7p_A           93 DPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILL---KSAQGKLN  169 (345)
T ss_dssp             CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH---HHTTTCSC
T ss_pred             ChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHH---HHccCCCC
Confidence            678999999999999999999999999999999999999999999998 79999999999999998753   45678777


Q ss_pred             CCEEEe-chhhHHHHHHHHHHHhCCCCCCCc-ccEEecccCcccccccccCCCCC-----CCCHHHH-HHHHHHHhcchh
Q 018433          184 KKLLGV-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-----SFTQEET-EYLTNRIQNGGT  255 (356)
Q Consensus       184 ~kviG~-t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~~~~vp~~s~~~v~~-----~~~~~~~-~~l~~~v~~~~~  255 (356)
                      .|+||. |.||++|++++||+++|++|++|+ .+|||+||+ ++||+||++++.+     .++++.+ +++.++++++|+
T Consensus       170 ~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~-t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~  248 (345)
T 4h7p_A          170 PRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS-TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGA  248 (345)
T ss_dssp             GGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST-TCEEECTTCEETTEEGGGGCCC------HHHHHHHHHH
T ss_pred             cceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC-eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhh
Confidence            766666 999999999999999999999996 568999999 9999999998743     1333333 579999999999


Q ss_pred             HHHhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-ee-cCCC--CCccEEEEeEEEcCCceEEeccCCCCCHH
Q 018433          256 EVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FV-ASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEY  331 (356)
Q Consensus       256 ~ii~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~-~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~  331 (356)
                      +|++.|  ++++.||+|.++++++++|++|.+... ++++. +. +|+|  |+|+|||+||+++ +|.+++++.++|+++
T Consensus       249 eIi~~k--g~ss~~s~a~a~~~~~~~~l~~~~~~~-~vs~~v~s~~g~YGi~~~v~~s~Pv~~~-~G~~~iv~~l~l~~~  324 (345)
T 4h7p_A          249 EIIQLR--GLSSAMSAAKAAVDHVHDWIHGTPEGV-YVSMGVYSDENPYGVPSGLIFSFPCTCH-AGEWTVVSGKLNGDL  324 (345)
T ss_dssp             HHHHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEEEEECTTCTTCCCSSCEEEEEEEEE-TTEEEECCSCC----
T ss_pred             hhhhcC--CCcchhhHHHHHHHHHHHHhcCCCCce-EEEEEEEeCCCCcCCCCCEEEEEEEEEe-CCEEEEeCCCCCCHH
Confidence            999976  357889999999999999999986533 33333 34 5888  6899999999997 688888886689999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 018433          332 ERIGLEKAKKELAGSIQKG  350 (356)
Q Consensus       332 E~~~L~~sa~~l~~~~~~~  350 (356)
                      |+++|++|+++|+++.+.+
T Consensus       325 e~~~l~~s~~~L~~E~~~A  343 (345)
T 4h7p_A          325 GKQRLASTIAELQEERAQA  343 (345)
T ss_dssp             -CGGGHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999987654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=3e-61  Score=463.96  Aligned_cols=298  Identities=22%  Similarity=0.366  Sum_probs=260.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      ++++||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++||.|... ...++...  .+ +++++|||+||+
T Consensus         7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii   82 (326)
T 2zqz_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS--AE-YSDAKDADLVVI   82 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGGGCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEE
Confidence            34589999999 999999999999999999999999987  7889999999752 23444432  34 689999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      ++|.|+++|++|+|++.+|+++++++++.|+++||++|+|++|||+|++|++    +++.+++|++||||+ |.||+.|+
T Consensus        83 ~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~----~~k~s~~p~~rviG~gt~LD~~R~  158 (326)
T 2zqz_A           83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYA----TWKLSGFPKNRVVGSGTSLDTARF  158 (326)
T ss_dssp             CCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH----HHHHcCCCHHHEEEccccchHHHH
Confidence            9999999999999999999999999999999999999999999999999765    467789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----------CCCHHHHHHHHHHHhcchhHHHhhhccCCc
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  266 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  266 (356)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+           .++++.++++.+++++++++|++   +||+
T Consensus       159 ~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~---~kG~  234 (326)
T 2zqz_A          159 RQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGA  234 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHH---HHSC
T ss_pred             HHHHHHHhCCChhheEEEEecccCC-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHH---cCCC
Confidence            9999999999999999999999999 9999999987632           14566788999999999999999   4588


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433          267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  344 (356)
Q Consensus       267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~  344 (356)
                      ++|++|.++++++++|++|.+   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       235 t~~~~a~aa~~~~~ai~~~~~---~~~~vsv~~~G~yg~~~~~~svP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  310 (326)
T 2zqz_A          235 TFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK  310 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhCCC---cEEEEEEeccCccCCCceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999865   488887 789998 44999999999999999999995 999999999999999999


Q ss_pred             HHHHHhhhhhc
Q 018433          345 GSIQKGISFSK  355 (356)
Q Consensus       345 ~~~~~~~~~~~  355 (356)
                      +.+++..++++
T Consensus       311 ~~~~~~~~~~~  321 (326)
T 2zqz_A          311 KVLTDAFAKND  321 (326)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHhhh
Confidence            99999888765

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.2e-61  Score=463.52  Aligned_cols=296  Identities=22%  Similarity=0.355  Sum_probs=257.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .+||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++|+.|... ...++...  .+ +++++|||+||+++
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVii~a   80 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVITA   80 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEECC
Confidence            479999999 999999999999999999999999987  7889999999752 23444432  34 68999999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  199 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~  199 (356)
                      |.|+++|++|+|++.+|+++++++++.|+++||++|+|++|||+|++|++    +++.+++|++||||+ |.||+.|+++
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~----~~k~s~~p~~rviG~gt~LD~~R~~~  156 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYA----TWKFSGFPKERVIGSGTSLDSSRLRV  156 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHH----HHHHcCCCHHHEEeccccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999765    467789999999999 9999999999


Q ss_pred             HHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhccCCcccc
Q 018433          200 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  269 (356)
Q Consensus       200 ~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~  269 (356)
                      ++|+++|+++++|+++||||||+ +++|+||++++.+          .++++.++++.+++++++++|++   +||+++|
T Consensus       157 ~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~~  232 (318)
T 1ez4_A          157 ALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGATFY  232 (318)
T ss_dssp             HHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HHSCCCH
T ss_pred             HHHHHhCcChhHEEEEEecccCC-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhhee---CCCcchH
Confidence            99999999999999999999999 9999999988632          25666789999999999999999   4689999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          270 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       270 s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      ++|.++++++++|++|.+   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       233 ~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~  308 (318)
T 1ez4_A          233 GIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVL  308 (318)
T ss_dssp             HHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999865   488887 789998 44999999999999999999995 999999999999999999999


Q ss_pred             HHhhhhhc
Q 018433          348 QKGISFSK  355 (356)
Q Consensus       348 ~~~~~~~~  355 (356)
                      ++..++++
T Consensus       309 ~~~~~~~~  316 (318)
T 1ez4_A          309 NDGLAELE  316 (318)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99887764

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=2.1e-60  Score=462.60  Aligned_cols=300  Identities=19%  Similarity=0.206  Sum_probs=252.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcE---EEEEeCCC------chhHHHHHhcCCCC--CeEEEEeCCCChhhhhC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSV---LHLYDVVN------TPGVTADISHMDTG--AVVRGFLGQPQLENALT  111 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~e---l~L~D~~~------~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~  111 (356)
                      +++||+||||+|+||+++++.|+.+++++|   |+|+|.+.      ++|+++||+|+.+.  ..++..   ++.+++++
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~---~~~y~~~~  107 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG---IDPYEVFE  107 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE---SCHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe---cCCHHHhC
Confidence            567999999779999999999999998877   77766543      58999999999742  234432   34468999


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-  189 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-  189 (356)
                      |||+||+++|.||+|||+|+|++..|+++++++++.|.++ +|++++|++|||+|++|+++    ++.++++++|+||+ 
T Consensus       108 daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia----~k~sg~~~~rvig~g  183 (375)
T 7mdh_A          108 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC----LKNAPDIPAKNFHAL  183 (375)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH----HHHcCCCCccEEEee
Confidence            9999999999999999999999999999999999999998 79999999999999998865    66666777788888 


Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcc-cEEecccCcccccccccCCCCC----C-CCHHHH--HHHHHHHhcchhHHHhhh
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC----S-FTQEET--EYLTNRIQNGGTEVVEAK  261 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~-~viG~hg~~~~vp~~s~~~v~~----~-~~~~~~--~~l~~~v~~~~~~ii~~~  261 (356)
                      |.||++||+++||+++|++|++|+. +||||||+ ++||+||++++.+    + ..++.|  +++.++|+++|++|++.|
T Consensus       184 T~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k  262 (375)
T 7mdh_A          184 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW  262 (375)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             ehHHHHHHHHHHHHHhCcChhhcccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999985 89999998 9999999998743    2 334444  789999999999999954


Q ss_pred             ccCCcccch-HHHHHHHHHHHHHcCCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 018433          262 AGAGSATLS-MAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL  336 (356)
Q Consensus       262 ~gkg~t~~s-~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L  336 (356)
                         |+++|+ .|.++++.+.+|+++++ ++.++|++ +++| +|  ++|+|||+||++|++|++++++.++|+++|+++|
T Consensus       263 ---G~ts~a~aa~~i~~~i~~~l~g~d-~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l~L~~~E~~~l  338 (375)
T 7mdh_A          263 ---GRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERI  338 (375)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHSCCC-TTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHH
T ss_pred             ---CCCchHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCCCCCHHHHHHH
Confidence               556553 44445555555565443 23589998 7899 68  5899999999999999999996349999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 018433          337 EKAKKELAGSIQKGISFS  354 (356)
Q Consensus       337 ~~sa~~l~~~~~~~~~~~  354 (356)
                      ++|++.|+++.+.+..++
T Consensus       339 ~~Sa~~L~~e~~~~~~~~  356 (375)
T 7mdh_A          339 KKSEAELLAEKKCVAHLT  356 (375)
T ss_dssp             HHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998877655

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=1.1e-60  Score=460.84  Aligned_cols=303  Identities=23%  Similarity=0.331  Sum_probs=261.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM  113 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~e-----l~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a  113 (356)
                      +|+||+|+||+|+||+++++.|+.++++++     |+|+|+++    ++|.++||+|+.+. .+..+..+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~-~~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP-LLKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCT-TEEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhc-ccCCEEEcCCcHHHhCCC
Confidence            578999999879999999999999998888     99999974    68999999997532 222222235667999999


Q ss_pred             cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-ch
Q 018433          114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM  191 (356)
Q Consensus       114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a-~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~  191 (356)
                      |+||++||.|+++|++|+|++..|+++++++++.+++++|++ |+|++|||+|++|+++    ++.++++|+++||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~----~~~~~~~p~~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH----HHHcCCCCcCEEEEEEh
Confidence            999999999999999999999999999999999999999987 7999999999998765    56665444455776 99


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCccc-EEecccCcccccccccCCC--CC-CC------CHHHH--HHHHHHHhcchhHHHh
Q 018433          192 LDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKP--PC-SF------TQEET--EYLTNRIQNGGTEVVE  259 (356)
Q Consensus       192 ld~~R~~~~la~~l~v~~~~v~~~-viG~hg~~~~vp~~s~~~v--~~-~~------~~~~~--~~l~~~v~~~~~~ii~  259 (356)
                      ||++|+++++|+++|++|++|+++ ||||||+ ++||+||++++  .+ ++      .++.|  +++.++++++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988 5999999 99999999974  22 12      22333  5899999999999999


Q ss_pred             hhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHH
Q 018433          260 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIG  335 (356)
Q Consensus       260 ~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~  335 (356)
                      .+  ++++.|++|.++++++++|++|++.+ .++|++ +++| +|  ++|+|||+||++ ++|++++++.++|+++|+++
T Consensus       236 ~k--~~ssa~~~a~~~~~~~~~il~~~~~~-~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l~L~~~E~~~  311 (333)
T 5mdh_A          236 AR--KLSSAMSAAKAICDHVRDIWFGTPEG-EFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGLPINDFSREK  311 (333)
T ss_dssp             HH--SSCCCHHHHHHHHHHHHHHHHCCCTT-CCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCCCCCHHHHHH
T ss_pred             cc--CchHHHHHHHHHHHHHHHHhcCCCCC-eEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCCCCCHHHHHH
Confidence            75  45688999999999999999997532 489998 6799 98  479999999999 99999999833999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhc
Q 018433          336 LEKAKKELAGSIQKGISFSK  355 (356)
Q Consensus       336 L~~sa~~l~~~~~~~~~~~~  355 (356)
                      |++|++.|+++++++++|++
T Consensus       312 l~~sa~~L~~~~~~~~~~l~  331 (333)
T 5mdh_A          312 MDLTAKELAEEKETAFEFLS  331 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999875

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=2.4e-60  Score=454.51  Aligned_cols=292  Identities=24%  Similarity=0.394  Sum_probs=265.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      ||+|||| |++|+++++.++.+++ +||+|+|+++  +++.++|+.|..    ....++.   ++|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEe
Confidence            7999999 9999999999998888 8999999988  788899999863    1233443   3676 899999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~  198 (356)
                      +|.|+++|++|+|++.+|++++++++++++++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVM----YKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    67789999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----CCCHHHHHHHHHHHhcchhHHHhhhccCC-cccchHH
Q 018433          199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAG-SATLSMA  272 (356)
Q Consensus       199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg-~t~~s~A  272 (356)
                      +++|+++|+++++|+++|||+||+ +++|+||++++.+     .+++++++++.+++++++++|++   +|| +++||+|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITE---LRGYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHH---HHSSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEeccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhh---CCCCccHHHHH
Confidence            999999999999999999999998 9999999998743     15777899999999999999999   457 8999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018433          273 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG  350 (356)
Q Consensus       273 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~  350 (356)
                      .++++++++|++|++   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       227 ~a~~~~~~ai~~~~~---~v~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~  302 (308)
T 2d4a_B          227 AGLVLTVEAIKRDSK---RIYPYSLYLQGEYGYNDIVAEVPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETL  302 (308)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhCCC---cEEEEEEEEcCccCCCceEEEEEEEEcCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999874   588886 789998 67999999999999999999995 999999999999999999999988


Q ss_pred             hhhhc
Q 018433          351 ISFSK  355 (356)
Q Consensus       351 ~~~~~  355 (356)
                      ...++
T Consensus       303 ~~~l~  307 (308)
T 2d4a_B          303 PPQLR  307 (308)
T ss_dssp             CHHHH
T ss_pred             HHHhc
Confidence            76654

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=3.1e-60  Score=454.22  Aligned_cols=290  Identities=22%  Similarity=0.338  Sum_probs=262.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++||.|+.. ...++...  ++ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            69999999 999999999999999999999999987  7888999999752 13344432  35 588999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHH
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  200 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~  200 (356)
                      .|+++|++|+|++.+|++++++++++|+++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVA----YALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764    67779999999999 99999999999


Q ss_pred             HHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433          201 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  268 (356)
Q Consensus       201 la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  268 (356)
                      +|+++|+++++|+++||||||+ +++|+||++++.+            .++++.++++.++++++++++++   +||+++
T Consensus       153 la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHGD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHH---HHSCCC
T ss_pred             HHHHhCcCHHHeEEEEecccCC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHh---ccCCcH
Confidence            9999999999999999999999 9999999987632            14666789999999999999999   458899


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 018433          269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS  346 (356)
Q Consensus       269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~  346 (356)
                      |++|.++++++++|++|.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|++.
T Consensus       229 ~~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~  304 (310)
T 2xxj_A          229 YGIGAGLARLVRAILTDEK---GVYTVSAFTPEVAGVLEVSLSLPRILGAGGVAGTVYP-SLSPEERAALRRSAEILKEA  304 (310)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---CEEEEEEEEcCccCCccEEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999865   488887 789998 56899999999999999999995 99999999999999999999


Q ss_pred             HHHh
Q 018433          347 IQKG  350 (356)
Q Consensus       347 ~~~~  350 (356)
                      +++.
T Consensus       305 ~~~~  308 (310)
T 2xxj_A          305 AFAL  308 (310)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=1.5e-59  Score=450.80  Aligned_cols=293  Identities=22%  Similarity=0.364  Sum_probs=261.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      +++||+|||| |++|+++++.|+.+++++||+|+|+++  +++.++|+.|...  ...++...  ++ +++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~-~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GE-YSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CC-HHHhCCCCEEEE
Confidence            5689999999 999999999999888889999999987  6788899988631  13344432  34 689999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      ++|.|+++|++|.+++.+|+++++++++.|.++||++|+|++|||+|++|++    +++.+++|++||||+ |.||+.|+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~----~~k~~~~p~~rviG~gt~lD~~r~  156 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYA----TWKFSGLPKERVIGSGTILDSARF  156 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHH----HHHHhCCCHHHEEecCccccHHHH
Confidence            9999999999999999999999999999999999999999999999999765    467789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhccCCcc
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  267 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t  267 (356)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+          .++++.++++.+++++++++|++   +||++
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~  232 (317)
T 3d0o_A          157 RLLLSEAFDVAPRSVDAQIIGEHGD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ---AKGAT  232 (317)
T ss_dssp             HHHHHHHHTSCGGGCBCCEEBCSST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHH---HHSCC
T ss_pred             HHHHHHHhCcChhhEEEEEEecCCC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEe---CCCCc
Confidence            9999999999999999999999999 9999999988632          14455678999999999999999   45899


Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 018433          268 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG  345 (356)
Q Consensus       268 ~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~  345 (356)
                      +|++|.++++++++|++|.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       233 ~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~  308 (317)
T 3d0o_A          233 YYGVAMGLARITEAIFRNED---AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKFAHSAKTLKD  308 (317)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999865   488887 789998 44999999999999999999995 9999999999999999999


Q ss_pred             HHHHhh
Q 018433          346 SIQKGI  351 (356)
Q Consensus       346 ~~~~~~  351 (356)
                      .+++..
T Consensus       309 ~~~~~~  314 (317)
T 3d0o_A          309 IMAEAE  314 (317)
T ss_dssp             HHHC--
T ss_pred             HHHHHH
Confidence            998654

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=1.7e-61  Score=464.19  Aligned_cols=281  Identities=20%  Similarity=0.255  Sum_probs=253.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      +.+||+|||| |.||+++++.++.++++++|+|+|+++  ++|.++||+|... ....+.. .++|+ ++++|||+||++
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~t~d~-~~~~daDiVIit   96 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIV-SGKDY-SVSAGSKLVVIT   96 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEE-EESSS-CSCSSCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEE-EcCCH-HHhCCCCEEEEe
Confidence            4579999999 999999999999999999999999987  7899999999742 2222222 24677 569999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~  198 (356)
                      +|.|++|||+|+|++.+|+++++++++.+.++||++|++++|||+|++|+++    ++.+|||++||||+ |.||+.|++
T Consensus        97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~----~k~sg~p~~rViG~gt~LDs~R~~  172 (330)
T 3ldh_A           97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQD----WKLSGLPMHRIIGSGCNLDSARFR  172 (330)
T ss_dssp             CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEECCTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHH----HHHhCCCHHHeecccCchhHHHHH
Confidence            9999999999999999999999999999999999999999999999998764    67779999999999 799999999


Q ss_pred             HHHHHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHH-HHHHHHHhcchhHHHhhhccCCcccchHHH----
Q 018433          199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET-EYLTNRIQNGGTEVVEAKAGAGSATLSMAY----  273 (356)
Q Consensus       199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~-~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~----  273 (356)
                      +++|+++|+++++|+++||||||+ +++|+||+          +| +++.++++++|++|++   +||+++||+|.    
T Consensus       173 ~~lA~~lgv~~~~V~~~V~G~Hg~-t~vp~~S~----------~~~~~~~~~v~~~g~eii~---~kg~t~~a~a~~~~~  238 (330)
T 3ldh_A          173 YLMGERLGVHSCLVIGWVIGQHGD-SVPSVWSG----------MWDAKLHKDVVDSAYEVIK---LKGYTSWAIGLVVSN  238 (330)
T ss_dssp             HHHHHHHTSCTTTCCEEECSSSST-TCCEEEEE----------EEETTEEHHHHHCCCTTST---TCHHHHHHHHHTTHH
T ss_pred             HHHHHHhCCCHHHeEEEEEcCCCC-ceeeechh----------hHHHHHHHHHHHHHHHHHH---ccCCcceeeeeeccC
Confidence            999999999999999999999999 99999998          23 6788889999999999   46899999999    


Q ss_pred             -------------HHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEE--eccCCCCCHHHHHH
Q 018433          274 -------------AAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEE--IFQLGPLNEYERIG  335 (356)
Q Consensus       274 -------------a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~--i~~~~~L~~~E~~~  335 (356)
                                   ++++++++|++|.+   .++|++ +++|+|  ++|+|||+||++| +|+++  ++++ +|+++|+++
T Consensus       239 ~~~~~~~~~~~~~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~~-~L~~~E~~~  313 (330)
T 3ldh_A          239 PVDVLTYVAWKGCSVADLAQTIMKDLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVKM-KLKPDEEQQ  313 (330)
T ss_dssp             HHTTSSSCSCTHHHHHHHHHHHHHTCC---EEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCCC-CCCHHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHcCCC---ceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceecC-CCCHHHHHH
Confidence                         99999999999864   589997 789998  4699999999999 99999  9995 999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018433          336 LEKAKKELAGSIQK  349 (356)
Q Consensus       336 L~~sa~~l~~~~~~  349 (356)
                      |++|++.|++.++.
T Consensus       314 l~~s~~~l~~~~~~  327 (330)
T 3ldh_A          314 LQKSATTLWDIQKD  327 (330)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=8e-59  Score=443.22  Aligned_cols=289  Identities=26%  Similarity=0.369  Sum_probs=261.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CC--chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~--~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      |||+||||+|++|+++++.|+.+++..|++|+|+  ++  +++.++|+.|... ...++...  ++ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            6999999779999999999999888889999999  66  5677899988642 23344432  35 5889999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~  198 (356)
                      +|.|+++|++|.+++.+|+++++++++++++++|++|++++|||+|++|++    +++.+++|++||||+ |.||+.|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~----~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH----LYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH----HHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH----HHHHcCCCHHHeeecccchhHHHHH
Confidence            999999999999999999999999999999999999999999999999765    478889999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCcccEEecccCcccccccccCCC---CCCC-CHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHH
Q 018433          199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP---PCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA  274 (356)
Q Consensus       199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v---~~~~-~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a  274 (356)
                      +++|+++|+++++|+++||||||+ +++|+||++++   + ++ ++++++++.+++++++++|++   +||+++||+|.+
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~p-~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a  228 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTD-PEFSGDEKEQLLGDLQESAMDVIE---RKGATEWGPARG  228 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBC-CCCCHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCCC-ccccCCcccccCCcC-ccCCHHHHHHHHHHHHHHhHHHHh---cCCChHHHHHHH
Confidence            999999999999999999999999 99999999875   3 44 788899999999999999998   678999999999


Q ss_pred             HHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018433          275 AVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  349 (356)
Q Consensus       275 ~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~  349 (356)
                      +++++++|++|++   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++
T Consensus       229 ~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~  301 (303)
T 1o6z_A          229 VAHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK  301 (303)
T ss_dssp             HHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC---CEEEEEEecCCccCCcceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999975   488886 789998 67999999999999999999995 99999999999999999999875

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3.1e-59  Score=448.77  Aligned_cols=293  Identities=24%  Similarity=0.356  Sum_probs=254.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      +++||+|||| |+||+++++.|+..++++||+|+|+++  +++.++|+.|... ...++..  .++ +++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~--~~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE--ECC-HHHhCCCCEEEEc
Confidence            4579999999 999999999999999999999999988  7889999999752 2345543  245 5889999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~  198 (356)
                      +|.|+++|++|.|++.+|+++++++++.|.++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~----~k~s~~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHcCCCHHHEeccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999998754    67779999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----C--------CCHHHHHHHHHHHhcchhHHHhhhccCCc
Q 018433          199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S--------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  266 (356)
Q Consensus       199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~--------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  266 (356)
                      +++|+++|+++++|+++||||||+ +++|+||++++.+    +        +.++.++++.++++++++++++   +||+
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  233 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---NKGA  233 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHH---HTSC
T ss_pred             HHHHHHhCCCHHHeEEEEecccCC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhh---CCCc
Confidence            999999999999999999999999 9999999987531    1        1234468999999999999999   5689


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433          267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  344 (356)
Q Consensus       267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~  344 (356)
                      ++|++|.++++++++|++|.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       234 t~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  309 (318)
T 1y6j_A          234 TYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVK  309 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999965   478887 789998 57999999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 018433          345 GSIQKGI  351 (356)
Q Consensus       345 ~~~~~~~  351 (356)
                      +.+++..
T Consensus       310 ~~~~~~~  316 (318)
T 1y6j_A          310 KVLNEVK  316 (318)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHh
Confidence            9998764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=3.4e-58  Score=440.03  Aligned_cols=291  Identities=28%  Similarity=0.465  Sum_probs=255.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      |||+|||| |+||+++++.|+..++++ |+|+|+++  +++.++|+.|..    ...+++.   ++|+ ++++|||+||+
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIVV   76 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEEE
Confidence            69999999 999999999999998764 99999988  678889999863    1233443   3677 89999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      ++|.|+++|++|.|++.+|+++++++++.+.++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~----~~~~~~~~~rviG~gt~LD~~r~  152 (309)
T 1ur5_A           77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIGQAGVLDAARY  152 (309)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHH----HHHcCCCHHHEEECCcchHHHHH
Confidence            99999999999999999999999999999999999999999999999997654    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----CCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHH
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  272 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A  272 (356)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+     .+++++++++.+++++++++|++. .++|+++||+|
T Consensus       153 ~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~a  230 (309)
T 1ur5_A          153 RTFIAMEAGVSVEDVQAMLMGGHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAPA  230 (309)
T ss_dssp             HHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHHH
T ss_pred             HHHHHHHhCCChhheeEEEecCcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHHH
Confidence            9999999999999999999999998 9999999987632     257788999999999999999996 35789999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018433          273 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG  350 (356)
Q Consensus       273 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~  350 (356)
                      .++++++++|++|++   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       231 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  306 (309)
T 1ur5_A          231 AATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDTL  306 (309)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999875   588886 789998 67999999999999999999995 999999999999999999999876


Q ss_pred             h
Q 018433          351 I  351 (356)
Q Consensus       351 ~  351 (356)
                      .
T Consensus       307 ~  307 (309)
T 1ur5_A          307 K  307 (309)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=3e-58  Score=441.70  Aligned_cols=292  Identities=21%  Similarity=0.337  Sum_probs=261.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      +++||+|||| |.+|+++++.|+..++.+||+|+|+++  +++.++|+.|....  ..+++..  ++ +++++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEEE
Confidence            4579999999 999999999999888889999999987  67888999886421  2455432  34 588999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      ++|.|+++|++|.+++.+|+++++++++.+++++|++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~----~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHH----HHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999998754    67779999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----C-------CCHHHHHHHHHHHhcchhHHHhhhccCCc
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  266 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~-------~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  266 (356)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+    +       +.+++++++.+++++++++|++   +||+
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  232 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE---KKGA  232 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHH---HHSC
T ss_pred             HHHHHHHhCCCHHHeEEEEecccCC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHh---ccCC
Confidence            9999999999999999999999999 9999999987531    1       3455678999999999999999   4588


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433          267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  344 (356)
Q Consensus       267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~  344 (356)
                      ++|++|.++++++++|++|.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       233 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~yg~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~  308 (316)
T 1ldn_A          233 TYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLK  308 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999865   478887 789998 57999999999999999999995 999999999999999999


Q ss_pred             HHHHHh
Q 018433          345 GSIQKG  350 (356)
Q Consensus       345 ~~~~~~  350 (356)
                      +.+++.
T Consensus       309 ~~~~~~  314 (316)
T 1ldn_A          309 SVLARA  314 (316)
T ss_dssp             HHHHHS
T ss_pred             HHHHHH
Confidence            999865

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=5.4e-58  Score=437.01  Aligned_cols=284  Identities=17%  Similarity=0.238  Sum_probs=247.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      +++||+|||| |++|+++++.++..++++||+|+|+++ +.+.++|+.|... +.++.   ++|+ ++++|||+||+++|
T Consensus        13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~-~~i~~---t~d~-~~l~~aD~Vi~aag   86 (303)
T 2i6t_A           13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL-PNVEI---SKDL-SASAHSKVVIFTVN   86 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC-TTEEE---ESCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC-CCeEE---eCCH-HHHCCCCEEEEcCC
Confidence            3479999999 999999999999999999999999988 7788999998543 45654   3677 88999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHH
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  200 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~  200 (356)
                      .+ ++|++|+|++.+|+++++++++++.++||++|+|++|||+|++|++    +++.++||++||||+ |.||+.|++++
T Consensus        87 ~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~----~~~~~~~p~~rviG~gt~Ld~~R~~~~  161 (303)
T 2i6t_A           87 SL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYV----TWKLSTFPANRVIGIGCNLDSQRLQYI  161 (303)
T ss_dssp             C-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHHHH
T ss_pred             CC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHH----HHHhcCCCHHHeeCCCCCchHHHHHHH
Confidence            96 8999999999999999999999999999999999999999998765    477789999999999 99999999999


Q ss_pred             HHHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHHHHHHHHHH
Q 018433          201 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD  280 (356)
Q Consensus       201 la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A~a~~~li~  280 (356)
                      +|+++|+++++|+++|||+||+ +++|+||+...   +   ..+++.+++++++++|++   ++|+++||+|.+++++++
T Consensus       162 la~~lgv~~~~v~~~v~G~Hg~-s~~p~~s~~~~---~---~~~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i~~  231 (303)
T 2i6t_A          162 ITNVLKAQTSGKEVWVIGEQGE-DKVLTWSGQEE---V---VSHTSQVQLSNRAMELLR---VKGQRSWSVGLSVADMVD  231 (303)
T ss_dssp             HHHTSCCTTGGGGEEEEBSCSS-SCEEEEBCSSC---C---CCHHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCChHHeEEEEecCCCC-Ccccccccccc---c---cHHHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHHHH
Confidence            9999999999999999999998 89999999531   2   124677778889999988   678999999999999999


Q ss_pred             HHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018433          281 ACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG  350 (356)
Q Consensus       281 ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~  350 (356)
                      +|++|++   .+++++ +++|+|  ++|+|||+||++|++|+++++++++|+++|+++|++|++.|++.+++.
T Consensus       232 ai~~~~~---~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~~~~  301 (303)
T 2i6t_A          232 SIVNNKK---KVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQL  301 (303)
T ss_dssp             HHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCC---cEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999875   488887 789998  579999999999999999998865899999999999999999998754

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=7.1e-58  Score=438.55  Aligned_cols=294  Identities=24%  Similarity=0.407  Sum_probs=256.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CC--chhHHHHHhcCCC-C-CeEEEEeCCCChhhhhCCCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~--~~--~~g~~~dl~~~~~-~-~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      |||+||||+|++|+++++.|+.+++..|++|+|+  ++  +++.++|+.|... . ..++...++.+++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            6999999999999999999999888889999999  65  5788999988642 1 233433222236789999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      ++|.|+++|++|.+++.+|+++++++++++++++ ++||+++|||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA----LVDSKFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH----HHHHCCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH----HHhhCcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999998764    66789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----C---CCHHHHHHHHHHHhcchhHHHhhhccCCcccch
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S---FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS  270 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~---~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s  270 (356)
                      ++++|+++|+++++|++++||+||+ +++|+||++++.+    +   ++++.++++.+++++++++|++   +||+++||
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kgs~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeeccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeec---CCCCcHHH
Confidence            9999999999999999999999998 9999999988642    2   2566689999999999999998   56899999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          271 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       271 ~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      +|.++++++++|++|++   .+++++ +++|+|  .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       232 ~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  307 (313)
T 1hye_A          232 PAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYC  307 (313)
T ss_dssp             HHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC---eEEEEEEeecceecCccceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999864   478887 789998  35999999999999999999995 999999999999999999999


Q ss_pred             HHhh
Q 018433          348 QKGI  351 (356)
Q Consensus       348 ~~~~  351 (356)
                      ++..
T Consensus       308 ~~~~  311 (313)
T 1hye_A          308 EEVK  311 (313)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8764

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=2.4e-56  Score=429.39  Aligned_cols=290  Identities=29%  Similarity=0.474  Sum_probs=260.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCChhhhhCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      +++||+|||| |++|++++..|+..++++ |+|+|+++  +++.++|+.+..    ...+++.   ++|+ ++++|||+|
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~V   76 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGADVV   76 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEE
Confidence            3579999999 999999999999998864 99999988  678888888852    1234443   3677 899999999


Q ss_pred             EEcCCCCCCCCCc-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-c
Q 018433          117 IIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-T  190 (356)
Q Consensus       117 Ii~ag~~~~~g~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t  190 (356)
                      |+++|.|+++|++     |.|++.+|+++++++++.|.++||++|+|++|||++++|+++    ++.++||++||+|+ |
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~----~~~~g~~~~rviG~gt  152 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGLGG  152 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECCH
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHH----HHhcCCChHHEEeccC
Confidence            9999999999999     999999999999999999999999999999999999997654    56679999999999 6


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhh
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEA  260 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~  260 (356)
                      .||++|+++++|+++|+++++|+++|||+||+ +++|+||++++.+          .+++++++++.+++++++++|++.
T Consensus       153 ~ld~~R~~~~la~~lgv~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~  231 (322)
T 1t2d_A          153 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL  231 (322)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCHHHeEEEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999998 9999999987631          256677899999999999999995


Q ss_pred             hccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 018433          261 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  338 (356)
Q Consensus       261 ~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~  338 (356)
                         ||+++||+|.++++++++|++|++   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++
T Consensus       232 ---kgs~~~~~a~a~~~~~~ai~~~~~---~v~~~s~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~  304 (322)
T 1t2d_A          232 ---HASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  304 (322)
T ss_dssp             ---TSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             ---cCchHHHHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCCCceEEEEEEEEeCCeeEEeCCC-CCCHHHHHHHHH
Confidence               578999999999999999999875   588886 789999 67999999999999999999995 999999999999


Q ss_pred             HHHHHHHHHHHh
Q 018433          339 AKKELAGSIQKG  350 (356)
Q Consensus       339 sa~~l~~~~~~~  350 (356)
                      |++.|+++++.+
T Consensus       305 s~~~L~~~~~~~  316 (322)
T 1t2d_A          305 AIAETKRMKALA  316 (322)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=3.2e-56  Score=429.60  Aligned_cols=292  Identities=33%  Similarity=0.518  Sum_probs=261.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC----CCeEEEEeCCCChhhhhCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~----~~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      ++||+|||| |++|++++..|+..+++ +|+|+|+++  +++.++|+.|...    ..+++.   ++|+ ++++|||+||
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~VI   87 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVVI   87 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEEE
Confidence            479999999 99999999999999886 499999998  6777778877531    234543   4677 8999999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHH
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  196 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R  196 (356)
                      +++|.|+++|++|.|++.+|++++++++++|.++||++|+|++|||++++|+++    ++.+|||++||+|+ |.||++|
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~----~~~~~~~~~rviG~~t~Ld~~R  163 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYF----KEKSGIPANKVCGMSGVLDSAR  163 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHHH
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHhcCCChhhEEEeCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999997654    66789999999999 5999999


Q ss_pred             HHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhccCCc
Q 018433          197 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  266 (356)
Q Consensus       197 ~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~  266 (356)
                      +++++|+++|+++++|+++|||+||+ +++|+||++++.+          .+++++++++.++++++++++++.+ ++|+
T Consensus       164 ~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs  241 (328)
T 2hjr_A          164 FRCNLSRALGVKPSDVSAIVVGGHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGS  241 (328)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCC
T ss_pred             HHHHHHHHhCCCHHHeeEEEecCCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCc
Confidence            99999999999999999999999998 9999999987632          1466778899999999999999975 6899


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 018433          267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  344 (356)
Q Consensus       267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~  344 (356)
                      ++||+|.++++++++|++|++   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|+..|+
T Consensus       242 ~~~~~a~a~~~i~~ai~~~~~---~v~~~~v~~~G~~g~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  317 (328)
T 2hjr_A          242 AFYAPAASAVAMAQAYLKDSK---SVLVCSTYLTGQYNVNNLFVGVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQ  317 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999865   588886 789998 57999999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 018433          345 GSIQKGI  351 (356)
Q Consensus       345 ~~~~~~~  351 (356)
                      +.++++.
T Consensus       318 ~~~~~~~  324 (328)
T 2hjr_A          318 NLVQDLK  324 (328)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=8e-56  Score=427.30  Aligned_cols=294  Identities=31%  Similarity=0.507  Sum_probs=261.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCChhhhhCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      ++|||+|||| |++|++++..|+..+++ +|+|+|+++  +++.++|+.|..    ...+++.   |+|++++++|||+|
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~aDiV   82 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADCV   82 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCCCEE
Confidence            4579999999 99999999999998875 499999998  566677887752    1234543   47887799999999


Q ss_pred             EEcCCCCCCCCC-----cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-c
Q 018433          117 IIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-T  190 (356)
Q Consensus       117 Ii~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t  190 (356)
                      |+++|.|+++|+     +|.|++.+|+++++++++.|.++||++|+|++|||++++|+++    ++.+++|++||+|+ |
T Consensus        83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~----~~~~~~~~~rviG~gt  158 (331)
T 1pzg_A           83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGMAC  158 (331)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCH
T ss_pred             EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH----HHhcCCChhcEEeccc
Confidence            999999999999     9999999999999999999999999999999999999997654    56689999999999 7


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhh
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEA  260 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~  260 (356)
                      .||+.|+++++|+++|+++++|+++|||+||+ +++|+||++++.+          .++++.++++.++++.++++|++.
T Consensus       159 ~LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~  237 (331)
T 1pzg_A          159 MLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRF  237 (331)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHceEEEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHh
Confidence            99999999999999999999999999999998 9999999987632          146667889999999999999995


Q ss_pred             hccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 018433          261 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  338 (356)
Q Consensus       261 ~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~  338 (356)
                      . ++|+++||+|.++++++++|++|++   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++
T Consensus       238 ~-~kgst~~~~a~a~~~ii~ai~~~~~---~~~~~~v~~~G~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~  312 (331)
T 1pzg_A          238 L-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQK  312 (331)
T ss_dssp             H-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             h-cCCCccchHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHH
Confidence            3 5789999999999999999999865   588886 789998 57999999999999999999995 999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 018433          339 AKKELAGSIQKGI  351 (356)
Q Consensus       339 sa~~l~~~~~~~~  351 (356)
                      |++.|++.+++..
T Consensus       313 s~~~l~~~~~~~~  325 (331)
T 1pzg_A          313 SVDDVMALNKAVA  325 (331)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998763

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=4.8e-55  Score=421.62  Aligned_cols=299  Identities=22%  Similarity=0.291  Sum_probs=258.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCC----C--chhHHHHHhcCCCCCeEEEEeCCCChhhhhC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV----N--TPGVTADISHMDTGAVVRGFLGQPQLENALT  111 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~----~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~  111 (356)
                      ++|||+||||+|+||+++++.|+.+++.     .||+|+|++    +  +.+.++||.|......... ..++|++++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i-~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGM-TAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEE-EEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcE-EEecCcHHHhC
Confidence            4689999998899999999999988765     499999998    5  5788999999642222222 23468889999


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEEEe
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  189 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kviG~  189 (356)
                      |||+||+++|.|+++|++|.+++.+|+++++++++++.++| |++|+|++|||+|++|+++    ++.+ +||++|++|+
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~----~~~~~~~p~~~v~g~  158 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA----MKSAPSLPAKNFTAM  158 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH----HHHcCCCCHHHEEEe
Confidence            99999999999999999999999999999999999999998 9999999999999998765    5566 9999999999


Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcc-cEEecccCcccccccccCCCCC-C----CCHHH--HHHHHHHHhcchhHHHhhh
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK  261 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~-~viG~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~ii~~~  261 (356)
                      |.||+.|+++++|+++|+++++|+. +|||+||+ +++|+||++++.+ +    +++++  .+++.+++++++++|++.|
T Consensus       159 t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~-s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k  237 (329)
T 1b8p_A          159 LRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR  237 (329)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred             ecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC-cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999985 58999998 9999999998743 1    22233  4789999999999999976


Q ss_pred             ccCCccc-chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEecc-CCCCCHHHHHHH
Q 018433          262 AGAGSAT-LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYERIGL  336 (356)
Q Consensus       262 ~gkg~t~-~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~-~~~L~~~E~~~L  336 (356)
                       |  .++ ++.|.++++++++|+++..+  .+++++ +++|+|  |+|+|||+||++ ++|++++++ + +|+++|+++|
T Consensus       238 -g--~~~~~~~a~a~~~~~~ai~~~~~~--~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~-~l~~~e~~~l  310 (329)
T 1b8p_A          238 -G--VSSAASAANAAIDHIHDWVLGTAG--KWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGL-SIDAFSQERI  310 (329)
T ss_dssp             -S--SCCHHHHHHHHHHHHHHHHHCCTT--CCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCC-CCCHHHHHHH
T ss_pred             -C--CChHHHHHHHHHHHHHHHhcCCCC--cEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecCCC-CCCHHHHHHH
Confidence             3  344 44667899999999998422  378887 778998  689999999999 999999998 6 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 018433          337 EKAKKELAGSIQKGISFS  354 (356)
Q Consensus       337 ~~sa~~l~~~~~~~~~~~  354 (356)
                      ++|++.|+++++.+.+++
T Consensus       311 ~~s~~~l~~~~~~~~~~~  328 (329)
T 1b8p_A          311 NVTLNELLEEQNGVQHLL  328 (329)
T ss_dssp             HHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999998875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=9.7e-55  Score=416.25  Aligned_cols=293  Identities=30%  Similarity=0.495  Sum_probs=260.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      |||+|||| |++|++++..|+..+...+|+|+|+++  +++.++|+.+..    ....+..   ++|+ +++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDY-ADTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCH-HHHCCCCEEEE
Confidence            69999999 999999999999876667999999988  567777887752    1233443   3677 45999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~  197 (356)
                      +++.|+++|++|.|++.+|+++++++++.|.+++|++|++++|||++.+++++    ++.+++|++||+|+ |.||+.|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~----~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHH----HHhcCCChHHEEECCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999987654    66689999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----CCCHHHHHHHHHHHhcchhHHHhhhccCCcccchHH
Q 018433          198 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  272 (356)
Q Consensus       198 ~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~s~A  272 (356)
                      ++++|+++|+++++|++++||+||+ +++|+||++++.+     .+++++++++.+++++++++|++. .+||+++||+|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEcccCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            9999999999999999999999998 9999999998743     157778999999999999999996 36789999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018433          273 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG  350 (356)
Q Consensus       273 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~  350 (356)
                      .++++++++|++|++   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       230 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  305 (310)
T 1guz_A          230 SSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKML  305 (310)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999875   588886 789998 57999999999999999999995 999999999999999999999876


Q ss_pred             hh
Q 018433          351 IS  352 (356)
Q Consensus       351 ~~  352 (356)
                      ..
T Consensus       306 ~~  307 (310)
T 1guz_A          306 ES  307 (310)
T ss_dssp             --
T ss_pred             hh
Confidence            54

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=1.8e-54  Score=413.24  Aligned_cols=285  Identities=25%  Similarity=0.337  Sum_probs=229.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |||+|||| |++|++++..|+..++.++|+|+|+++  +++.++|+.|... ....+...  +|+ ++++|||+||+++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~~-~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GGH-SELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--ECG-GGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CCH-HHhCCCCEEEEcCC
Confidence            69999999 999999999999999889999999987  5778899988652 12333332  354 78999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHH
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  200 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~  200 (356)
                      .|+++|++|.|++.+|+++++++++.|.+++|++|+|++|||++++++++    ++.+  |++||+|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~----~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLA----TQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHH----HHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH----HHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999987654    4554  89999999 99999999999


Q ss_pred             HHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433          201 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  268 (356)
Q Consensus       201 la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  268 (356)
                      +|+++|+++++|++++|||||+ +++|+||++++.+            .++++.++++.+++++++++|++   +||+++
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~---~kg~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHGD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCCCC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---ccCCcH
Confidence            9999999999999999999999 9999999998742            14666789999999999999999   568999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      |++|.++++++++|++|.+   .+++++ +++| |.  +|||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       227 ~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g-yg--~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  299 (304)
T 2v6b_A          227 YGIGAALARITEAVLRDRR---AVLTVSAPTPE-YG--VSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLEQSAGVLRGFK  299 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEETT-TT--EEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhCCC---cEEEEEEEECC-cC--cEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854   488887 7899 83  99999999999999999995 999999999999999999988


Q ss_pred             HHh
Q 018433          348 QKG  350 (356)
Q Consensus       348 ~~~  350 (356)
                      ++.
T Consensus       300 ~~~  302 (304)
T 2v6b_A          300 QQL  302 (304)
T ss_dssp             ---
T ss_pred             HHh
Confidence            754

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=8.9e-52  Score=397.20  Aligned_cols=291  Identities=26%  Similarity=0.434  Sum_probs=256.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |||+|||+ |.+|++++..|+..++.++|+|+|+++  +.+.+.|+.+... ....+...  +|+ +++++||+||++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~d~-~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GDY-ADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe--CCH-HHhCCCCEEEEccC
Confidence            69999999 999999999999888888999999987  5666667665421 11223222  364 78999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHHHH
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  200 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~~~  200 (356)
                      .++++|++|.|++.+|+++++++++.|.+++|++++|++|||++++++++    ++.++||++||+|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r~~~~  152 (319)
T 1a5z_A           77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGSGTVLDTARLRTL  152 (319)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHH----HHHhCCChhhEEeeCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987654    56668999999999 89999999999


Q ss_pred             HHHHhCCCCCCCcccEEecccCcccccccccCCCCC--------C---CCHHHHHHHHHHHhcchhHHHhhhccCCcccc
Q 018433          201 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC--------S---FTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  269 (356)
Q Consensus       201 la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~--------~---~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~~  269 (356)
                      +|+++|+++++|+++|+|+||+ +++|+||++++.+        .   ++++.++++.++++++++++++   +||+++|
T Consensus       153 la~~lgv~~~~v~~~v~G~hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~  228 (319)
T 1a5z_A          153 IAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE---RKGATHY  228 (319)
T ss_dssp             HHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHH---HHSCCCH
T ss_pred             HHHHhCcCHHHceEEEEeCCCC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhc---cCCchHH
Confidence            9999999999999999999998 9999999987632        1   4666788999999999999999   4588999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          270 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       270 s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      ++|.++++++++|++|.+   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       229 ~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~  304 (319)
T 1a5z_A          229 AIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAI  304 (319)
T ss_dssp             HHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCccceEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999854   488887 789998 57999999999999999999995 999999999999999999999


Q ss_pred             HHhh
Q 018433          348 QKGI  351 (356)
Q Consensus       348 ~~~~  351 (356)
                      +++.
T Consensus       305 ~~~~  308 (319)
T 1a5z_A          305 NEIT  308 (319)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=5.6e-50  Score=382.87  Aligned_cols=289  Identities=19%  Similarity=0.264  Sum_probs=248.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||+ |.+|++++..|+..++..+|+|+|+++  +++.+.|+.|...  ...++..  ++|+ +++++||+||++.
T Consensus         2 ~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~d~-~~~~~aDvViiav   77 (309)
T 1hyh_A            2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVISTL   77 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEE--eCCH-HHhCCCCEEEEec
Confidence            69999998 999999999999888666999999987  5666777765421  1233432  2476 8899999999999


Q ss_pred             CCCCC----CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHH
Q 018433          121 GVPRK----PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV  195 (356)
Q Consensus       121 g~~~~----~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~  195 (356)
                      +.+++    +|++|+|++.+|+++++++++.+.+++|++|++++|||+++++++    +++.+++|++||+|+ |.||+.
T Consensus        78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~----~~~~~~~~~~rvig~gt~ld~~  153 (309)
T 1hyh_A           78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITAL----FQHVTGFPAHKVIGTGTLLDTA  153 (309)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHH
T ss_pred             CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHH----HHHhcCCCHHHEeecCccchHH
Confidence            99988    999999999999999999999999999999999999999998654    466678999999999 999999


Q ss_pred             HHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----C---CCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433          196 RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S---FTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  268 (356)
Q Consensus       196 R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~---~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  268 (356)
                      |+++.+++.+++++++++++++|+||+ +++|+||++++.+    .   ++++.|+++.++++++++++++.   ||+++
T Consensus       154 r~~~~~a~~l~~~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~~~  229 (309)
T 1hyh_A          154 RMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG---KGYTS  229 (309)
T ss_dssp             HHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH---HSSCC
T ss_pred             HHHHHHHHHhCCChhheEEEEEeCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhc---cCCch
Confidence            999999999999999999999999998 9999999987632    1   45667899999999999999995   47899


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      |++|.++++++++|++|++   .+++++ +++|   +|+|+|+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       230 ~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g---~~~~~~vP~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  302 (309)
T 1hyh_A          230 YGVATSAIRIAKAVMADAH---AELVVSNRRDD---MGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRF  302 (309)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEECTT---TCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEEECC---CCeEEEEEEEEeCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875   488886 7788   7999999999999999999995 999999999999999999999


Q ss_pred             HHhhh
Q 018433          348 QKGIS  352 (356)
Q Consensus       348 ~~~~~  352 (356)
                      ++..+
T Consensus       303 ~~~~~  307 (309)
T 1hyh_A          303 DEIVD  307 (309)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            88765

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=5.7e-49  Score=377.22  Aligned_cols=293  Identities=30%  Similarity=0.468  Sum_probs=258.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCChhhhhCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      +++||+|||| |.+|++++..|+..++. +|+|+|+++  +++.++|+.+..    ....+..   ++|+ +++++||+|
T Consensus         3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aDiV   76 (317)
T 2ewd_A            3 ERRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSDVV   76 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEE
Confidence            3579999999 99999999999988864 699999987  556566776642    1234443   3677 889999999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHH
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV  195 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~  195 (356)
                      |+++|.|+++|++|.|++.+|.++++++++.|.+++|++|++++|||++++++.+    ++.+++|++||+|+ |.+|+.
T Consensus        77 i~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~  152 (317)
T 2ewd_A           77 IITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHF----QKVSGLPHNKVCGMAGVLDSS  152 (317)
T ss_dssp             EECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHH
T ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH----HHhhCCCHHHEEeccCcHHHH
Confidence            9999999999999999999999999999999999999999999999999997654    56678999999999 699999


Q ss_pred             HHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhhhccCC
Q 018433          196 RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAG  265 (356)
Q Consensus       196 R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~~~gkg  265 (356)
                      |+++++|+++|+++++++++|+|+||+ +++|+||.+++.+          .++.++++++.+.++.+++++++.. |+|
T Consensus       153 r~~~~la~~lg~~~~~v~~~v~g~Hg~-~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g  230 (317)
T 2ewd_A          153 RFRTFIAQHFGVNASDVSANVIGGHGD-GMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTG  230 (317)
T ss_dssp             HHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSS
T ss_pred             HHHHHHHHHhCcChhhceEEEEecCCC-ceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCC
Confidence            999999999999999999999999998 9999999986532          2566778888888888999999975 688


Q ss_pred             cccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHH
Q 018433          266 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL  343 (356)
Q Consensus       266 ~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l  343 (356)
                      +++|++|.++++++++|++|++   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|+..|
T Consensus       231 ~~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~~g~~~~~~~~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l  306 (317)
T 2ewd_A          231 TAYFAPAAAAVKMAEAYLKDKK---AVVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILEL-DLTPLEQKLLGESINEV  306 (317)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSSTTCSSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCC---eEEEEEEEecCccCCcceEEEeEEEEcCCeeEEecCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999865   488886 779998 57999999999999999999995 99999999999999999


Q ss_pred             HHHHHHhh
Q 018433          344 AGSIQKGI  351 (356)
Q Consensus       344 ~~~~~~~~  351 (356)
                      ++.+++..
T Consensus       307 ~~~~~~~~  314 (317)
T 2ewd_A          307 NTISKVLD  314 (317)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998764

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=6.6e-46  Score=357.21  Aligned_cols=301  Identities=24%  Similarity=0.351  Sum_probs=252.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM  113 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a  113 (356)
                      ++|||+|+||+|++|++++..|+.+++.     .+|+++|+++    ..+.++|+.|..... +..+..+++++++++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~-~~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL-LAGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc-cCCeEeccChHHHhCCC
Confidence            4589999999999999999999988764     4999999874    467788998863211 11122235678899999


Q ss_pred             cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEEEech
Q 018433          114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGVTM  191 (356)
Q Consensus       114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kviG~t~  191 (356)
                      |+||++||.+++++++|.+++..|+.+++++++.+++++ |+++++++|||++.++++.    ++.+ ++|+.+++|.|.
T Consensus        82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~----~~~~~~~~p~~~yg~tk  157 (327)
T 1y7t_A           82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA----YKNAPGLNPRNFTAMTR  157 (327)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH----HHHcCCCChhheeccch
Confidence            999999999999999999999999999999999999998 9999999999998877653    4555 799999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCc-ccEEecccCcccccccccCCCCC----C-CCHHH-HHHHHHHHhcchhHHHhhhccC
Q 018433          192 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----S-FTQEE-TEYLTNRIQNGGTEVVEAKAGA  264 (356)
Q Consensus       192 ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~~~~vp~~s~~~v~~----~-~~~~~-~~~l~~~v~~~~~~ii~~~~gk  264 (356)
                      +++.|+.+.+++.+|+++..++ ..|+|+|++ +++|.|+++.+.+    . ++++. ++++.++++++|++|++.| | 
T Consensus       158 l~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k-g-  234 (327)
T 1y7t_A          158 LDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G-  234 (327)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH-S-
T ss_pred             HHHHHHHHHHHHHhCcChhheeeeEEEcCCCC-eEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc-C-
Confidence            9999999999999999999998 478999998 8999999986532    1 23322 4789999999999999976 3 


Q ss_pred             CcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHH
Q 018433          265 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKK  341 (356)
Q Consensus       265 g~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~  341 (356)
                      +++++++|.++++++++|++|++. +.+++++ +++|+|  |+|+|||+||++ ++|++++++.++|+++|+++|++|++
T Consensus       235 ~~~~~~~a~a~~~~~~~i~~~~~~-~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~~l~~~e~~~l~~s~~  312 (327)
T 1y7t_A          235 ASSAASAANAAIEHIRDWALGTPE-GDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVEGLEINEFARKRMEITAQ  312 (327)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTBCCT-TCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHcCCCC-CeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecCCCCCCHHHHHHHHHHHH
Confidence            233446788999999999999621 2488887 778998  689999999999 99999998833999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 018433          342 ELAGSIQKGISF  353 (356)
Q Consensus       342 ~l~~~~~~~~~~  353 (356)
                      .|+++++.+.++
T Consensus       313 ~l~~~~~~~~~~  324 (327)
T 1y7t_A          313 ELLDEMEQVKAL  324 (327)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988654

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=1.4e-44  Score=357.99  Aligned_cols=289  Identities=13%  Similarity=0.089  Sum_probs=229.4

Q ss_pred             CCeEEEEcCCCchHHHHH--HHHHh--CCC-CcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEE
Q 018433           44 GFKVAILGAAGGIGQPLA--MLMKI--NPL-VSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a--~~l~~--~~~-~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      ++||+|||| |++ ++..  ..|+.  .++ .+||+|+|+++  +++ +.|+.+.......++. .++|+++|++|||||
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~~~v~-~t~d~~~al~~AD~V   77 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDRFKVL-ISDTFEGAVVDAKYV   77 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTSSEEE-ECSSHHHHHTTCSEE
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCCeEEE-EeCCHHHHhCCCCEE
Confidence            579999999 776 3332  34555  566 89999999987  333 5566553211113332 357888999999999


Q ss_pred             EEcCCCCCCCCCcHHH--------------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHH
Q 018433          117 IIPAGVPRKPGMTRDD--------------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  176 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~--------------------~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~  176 (356)
                      |+++|.++++|++|++                    ++.+|+++++++++.|+++| +||+||+|||+|++|++    ++
T Consensus        78 iitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a----~~  152 (417)
T 1up7_A           78 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEF----VR  152 (417)
T ss_dssp             EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHH----HH
T ss_pred             EEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHH----HH
Confidence            9999999888887742                    46899999999999999999 99999999999999765    46


Q ss_pred             HhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-----------cccCcccccccccC---CCCC----CC
Q 018433          177 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-----------GHAGVTILPLLSQV---KPPC----SF  238 (356)
Q Consensus       177 ~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-----------~hg~~~~vp~~s~~---~v~~----~~  238 (356)
                      +.+  |++||||+|+.. .|+++++|+.+|+++++|+++++|           +||+ +++|.||..   ++.+    ++
T Consensus       153 k~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~~~~~~~~~~~~~~  228 (417)
T 1up7_A          153 NYL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFENLKLKLSNIPDEDF  228 (417)
T ss_dssp             HTT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHTTC---CCTTSC
T ss_pred             HhC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHHHHHhhCCCcCCch
Confidence            664  778999997654 499999999999999999999999           9998 999999985   3211    22


Q ss_pred             ---------------------CHHHHHHH---------HHHHhcchhHHH--------hhhccCCcccchHHHHHHHHHH
Q 018433          239 ---------------------TQEETEYL---------TNRIQNGGTEVV--------EAKAGAGSATLSMAYAAVKFAD  280 (356)
Q Consensus       239 ---------------------~~~~~~~l---------~~~v~~~~~~ii--------~~~~gkg~t~~s~A~a~~~li~  280 (356)
                                           +++.++++         .+++++.+++++        ++ .++|+++|  +.+++++++
T Consensus       229 ~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l-~~kg~t~~--~~~a~~ii~  305 (417)
T 1up7_A          229 PTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEEL-TKRGGSMY--STAAAHLIR  305 (417)
T ss_dssp             CHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGG-GGSTTTTH--HHHHHHHHH
T ss_pred             HHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhh-hhcCCcHH--HHHHHHHHH
Confidence                                 22333444         466777788888        22 24577755  689999999


Q ss_pred             HHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 018433          281 ACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS  352 (356)
Q Consensus       281 ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~~~~~  352 (356)
                      ||++|++   .+++++ +++|+|   |+|+++|+||+||++|++++... +|+++|+++++.++...+..++.+++
T Consensus       306 AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~~-~L~~~e~~~l~~~~~~e~l~veA~~~  377 (417)
T 1up7_A          306 DLETDEG---KIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQG-KGDHFALSFIHAVKMYERLTIEAYLK  377 (417)
T ss_dssp             HHHSSSC---EEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCCC-CCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCC---eEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999975   588887 678987   58999999999999999999994 99999999999999999988887754

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=2.4e-43  Score=352.19  Aligned_cols=292  Identities=14%  Similarity=0.137  Sum_probs=226.2

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHHh--CCC-CcEEEEEeCCC--chhH-HHHHhc-----CCCCCeEEEEeCCCChhhhhC
Q 018433           44 GFKVAILGAAGGI-GQPLAMLMKI--NPL-VSVLHLYDVVN--TPGV-TADISH-----MDTGAVVRGFLGQPQLENALT  111 (356)
Q Consensus        44 ~~KI~IIGa~G~v-G~~~a~~l~~--~~~-~~el~L~D~~~--~~g~-~~dl~~-----~~~~~~v~~~~~t~d~~~al~  111 (356)
                      ++||+|||| |++ |..++..|+.  .++ .+||+|+|+++  .+.. ..|+.+     ......++.   ++|+++|++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            479999999 888 6676767776  566 78999999976  2211 123222     222234443   478889999


Q ss_pred             CCcEEEEcCCCCCCCCCcHHH--------------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHH
Q 018433          112 GMDLVIIPAGVPRKPGMTRDD--------------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA  171 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~--------------------~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~  171 (356)
                      |||+||+++|.++++|++|++                    ++.+|+++++++++.|+++||+||+|++|||+|++|++ 
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a-  161 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEA-  161 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH-
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-
Confidence            999999999999888888864                    48999999999999999999999999999999999765 


Q ss_pred             HHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-----------cccCcccccccccCCCC-----
Q 018433          172 AEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-----------GHAGVTILPLLSQVKPP-----  235 (356)
Q Consensus       172 ~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-----------~hg~~~~vp~~s~~~v~-----  235 (356)
                         +++.+  |++||||+|+.. .|+++++|+.+|+++++|+++++|           +||+ +++|.|+.....     
T Consensus       162 ---~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~~~~~~~~g  234 (450)
T 1s6y_A          162 ---VLRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDLVAHPDRSG  234 (450)
T ss_dssp             ---HHHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHSCC----
T ss_pred             ---HHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHHHhhhcccc
Confidence               46664  778999998665 499999999999999999999999           9998 999999873211     


Q ss_pred             --------CCC---------------------CHHHH-------------HHHHHHHhcchhHHH-----hhhc--cCCc
Q 018433          236 --------CSF---------------------TQEET-------------EYLTNRIQNGGTEVV-----EAKA--GAGS  266 (356)
Q Consensus       236 --------~~~---------------------~~~~~-------------~~l~~~v~~~~~~ii-----~~~~--gkg~  266 (356)
                              .++                     +++.+             .++.+++++.+++++     +.+.  -.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~  314 (450)
T 1s6y_A          235 VTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKR  314 (450)
T ss_dssp             --------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------C
T ss_pred             ccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcc
Confidence                    011                     12211             244566777778887     3221  0012


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHH
Q 018433          267 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE  342 (356)
Q Consensus       267 t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~  342 (356)
                      +.+++|.+++++++||++|++   .+++++ +++|+|   |+|+++|+||+||++|++++... +|+++|+++++.++..
T Consensus       315 ~~~~~~~~a~~ii~AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~-~L~~~e~~l~~~~~~~  390 (450)
T 1s6y_A          315 GGAYYSDAACSLISSIYNDKR---DIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVG-DLPVAVRGLVQQIKSF  390 (450)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCC---CEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcCCC---eEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeecC-CCCHHHHHHHHHHHHH
Confidence            344667999999999999976   488887 678987   68999999999999999999995 9999999999999887


Q ss_pred             HHHHHHHhh
Q 018433          343 LAGSIQKGI  351 (356)
Q Consensus       343 l~~~~~~~~  351 (356)
                      =+-.++.++
T Consensus       391 e~l~veAa~  399 (450)
T 1s6y_A          391 ERVAAEAAV  399 (450)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766666554

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=5.6e-42  Score=327.88  Aligned_cols=293  Identities=21%  Similarity=0.346  Sum_probs=251.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      ++|||+|||| |.+|+.++..|+..++.++|+|+|+++  +.+.++|+.+... ....+... ++|+ +++++||+||++
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~-~~~~~aD~Vii~   82 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG-SDDP-EICRDADMVVIT   82 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE-ESCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe-CCCH-HHhCCCCEEEEC
Confidence            4589999999 999999999999998888999999986  4556777766531 11222221 2454 789999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhhHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld~~R~~  198 (356)
                      ++.++++|++|.+++.+|+++++++++.+.+++|+++|++++||++.++++.    ++.+++|++||+|. |.+++.|++
T Consensus        83 v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~----~~~~~~~~~~vig~~~~l~~~r~~  158 (319)
T 1lld_A           83 AGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGSGTNLDSARLR  158 (319)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHH----HHhcCCCHHHEeeccccHhHHHHH
Confidence            9999999999999999999999999999999999999999999999987653    55568999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----------C--CCHHHHHHHHHHHhcchhHHHhhhccCC
Q 018433          199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------S--FTQEETEYLTNRIQNGGTEVVEAKAGAG  265 (356)
Q Consensus       199 ~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----------~--~~~~~~~~l~~~v~~~~~~ii~~~~gkg  265 (356)
                      ..+++++++++.+++.+++|+||+ +++|+|+...+..           .  .+++.++++.+.+++.+++|++.   +|
T Consensus       159 ~~~a~~~~v~~~~v~~~~~G~~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~---~G  234 (319)
T 1lld_A          159 FLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIING---KG  234 (319)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTS---CC
T ss_pred             HHHHHHhCCCHHHeEEEEEeCCCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhC---CC
Confidence            999999999999999999999998 8999999876521           1  23334788889999999999884   57


Q ss_pred             cccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHH
Q 018433          266 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL  343 (356)
Q Consensus       266 ~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l  343 (356)
                      ++.|++|.+.++++++|++|++   .+++++ +++|+| ..+.++|+||.++++|+++++++ +|+++|+++|++|++.|
T Consensus       235 ~~~~~~a~~~~sm~~di~~~~~---~ei~~s~~~~G~~~~~~~~~gvp~~~~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l  310 (319)
T 1lld_A          235 ATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAETL  310 (319)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCcCCccceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHH
Confidence            8889999999999999999865   477776 789998 56899999999999999999995 99999999999999999


Q ss_pred             HHHHHHh
Q 018433          344 AGSIQKG  350 (356)
Q Consensus       344 ~~~~~~~  350 (356)
                      ++.+++.
T Consensus       311 ~~~~~~~  317 (319)
T 1lld_A          311 KETAAQF  317 (319)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998754

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=7.2e-42  Score=342.97  Aligned_cols=291  Identities=15%  Similarity=0.185  Sum_probs=219.8

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHHhC--CC-CcEEEEEeCCC--chhHHHHHhcC-----CCCCeEEEEeCCCChhhhhCC
Q 018433           44 GFKVAILGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVN--TPGVTADISHM-----DTGAVVRGFLGQPQLENALTG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~v-G~~~a~~l~~~--~~-~~el~L~D~~~--~~g~~~dl~~~-----~~~~~v~~~~~t~d~~~al~~  112 (356)
                      ++||+|||| |++ +..++..|+.+  ++ ..||+|+|+++  +++. .|+.+.     .....++.   ++|+++|++|
T Consensus        28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~-~~~~~~~l~~~~~~~~I~~---t~D~~eal~~  102 (472)
T 1u8x_X           28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRI-AGACDVFIREKAPDIEFAA---TTDPEEAFTD  102 (472)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHH-HHHHHHHHHHHCTTSEEEE---ESCHHHHHSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHH-HHHHHHHhccCCCCCEEEE---ECCHHHHHcC
Confidence            469999999 888 55567778776  66 78999999987  3332 344432     12344554   4788899999


Q ss_pred             CcEEEEcCCCCCCCCCcH--------------------HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 018433          113 MDLVIIPAGVPRKPGMTR--------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  172 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r--------------------~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~  172 (356)
                      ||+||+++|.++++|++|                    ++++.+|+++++++++.|+++||+||+|++|||+|++|++  
T Consensus       103 AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~--  180 (472)
T 1u8x_X          103 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEA--  180 (472)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHH--
T ss_pred             CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH--
Confidence            999999999988887777                    4458999999999999999999999999999999998765  


Q ss_pred             HHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCC-CCCcccEEe-----------c-ccCcccccccccCCC-----
Q 018433          173 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-----------G-HAGVTILPLLSQVKP-----  234 (356)
Q Consensus       173 ~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~-~~v~~~viG-----------~-hg~~~~vp~~s~~~v-----  234 (356)
                        +++.+  |++||||+|+.. .|+++++|+.||+++ ++|+++++|           + ||+ +++|.|+...+     
T Consensus       181 --~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~-d~~p~~~~~~~~~g~~  254 (472)
T 1u8x_X          181 --TRRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGN-DLMPKLKEHVSQYGYI  254 (472)
T ss_dssp             --HHHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCC-BCHHHHHHHHHHHSSC
T ss_pred             --HHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCC-EehHhHHHHHHhcCCC
Confidence              46664  788999998665 499999999999998 999999999           8 998 89999987321     


Q ss_pred             C--------CCCCHHH--------------------H----HHHHHH----------Hhc-chhHHHhhhc-c--CC---
Q 018433          235 P--------CSFTQEE--------------------T----EYLTNR----------IQN-GGTEVVEAKA-G--AG---  265 (356)
Q Consensus       235 ~--------~~~~~~~--------------------~----~~l~~~----------v~~-~~~~ii~~~~-g--kg---  265 (356)
                      +        ..+..+-                    +    +++.++          +++ ...++++... +  ++   
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~  334 (472)
T 1u8x_X          255 PKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSE  334 (472)
T ss_dssp             CCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCC
T ss_pred             ccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCcc
Confidence            1        0111000                    0    121111          111 1122222110 2  34   


Q ss_pred             cccc---hHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 018433          266 SATL---SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  338 (356)
Q Consensus       266 ~t~~---s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~  338 (356)
                      .+.|   ++|.+++++++||++|++   .+++++ +++|+|   |+|+++|+||+||++|++++... +|+++|+++++.
T Consensus       335 ~~~~~~~~~~~~a~~ii~AI~~d~~---~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~-~Lp~~~~~l~~~  410 (472)
T 1u8x_X          335 NSEIKIDDHASYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVG-TIPQFQKGLMEQ  410 (472)
T ss_dssp             SCSSCCCTTTHHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHhcCCC---eEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecC-CCCHHHHHHHHH
Confidence            4445   999999999999999975   588887 678987   58999999999999999999995 999999999988


Q ss_pred             HHHHHHHHHHHhh
Q 018433          339 AKKELAGSIQKGI  351 (356)
Q Consensus       339 sa~~l~~~~~~~~  351 (356)
                      -...-+-.++.++
T Consensus       411 ~~~~e~l~veAa~  423 (472)
T 1u8x_X          411 QVSVEKLTVEAWA  423 (472)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7666555555443

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=100.00  E-value=2.9e-33  Score=278.49  Aligned_cols=291  Identities=20%  Similarity=0.220  Sum_probs=198.6

Q ss_pred             CCCeEEEEcCCCchH--HHHHHHHHhCC-CCcEEEEEeCCC--ch--hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcE
Q 018433           43 AGFKVAILGAAGGIG--QPLAMLMKINP-LVSVLHLYDVVN--TP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDL  115 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG--~~~a~~l~~~~-~~~el~L~D~~~--~~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDi  115 (356)
                      +++||+|||| |++|  ..++..|+... +..+|+|+|+++  ++  ....+....   ...++. .|+|+++|++|||+
T Consensus         4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~---~~~~I~-~TtD~~eAl~dADf   78 (450)
T 3fef_A            4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN---GRWRYE-AVSTLKKALSAADI   78 (450)
T ss_dssp             CCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT---SCEEEE-EESSHHHHHTTCSE
T ss_pred             CCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc---cCCeEE-EECCHHHHhcCCCE
Confidence            4579999999 9985  56676776543 345999999987  21  112221111   233433 36899999999999


Q ss_pred             EEEcCC------------CCCCCCCcHH----------HHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH
Q 018433          116 VIIPAG------------VPRKPGMTRD----------DLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  173 (356)
Q Consensus       116 VIi~ag------------~~~~~g~~r~----------~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~  173 (356)
                      ||++..            .|+|+|+.|.          ....+|+++++++++.|+++||+||+|++|||+|++|+++  
T Consensus        79 VI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~--  156 (450)
T 3fef_A           79 VIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL--  156 (450)
T ss_dssp             EEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH--
T ss_pred             EEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH--
Confidence            999885            5888887543          4567999999999999999999999999999999997654  


Q ss_pred             HHHHhCCCCCCCEEEechhhHHHHHHHHHHHh----C---CCCCCCcccEEe-cccC---------cccccc--------
Q 018433          174 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL----G---LDPRDVDVPVVG-GHAG---------VTILPL--------  228 (356)
Q Consensus       174 ~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l----~---v~~~~v~~~viG-~hg~---------~~~vp~--------  228 (356)
                        ++.  +|+.||||+|+.. .++++.+|+.|    |   +++++|+..++| ||..         .+.+|.        
T Consensus       157 --~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~  231 (450)
T 3fef_A          157 --YKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHY  231 (450)
T ss_dssp             --HHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETTEEEEEEEEETTEEHHHHHHHHHHHH
T ss_pred             --HHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecCeEeEEEEEECCEEChHHHHHHHHhh
Confidence              554  7889999999877 58999999999    5   779999999999 7754         122331        


Q ss_pred             -----------cccC-----------------------------CCCCCC-----------CHHHHHHHHHHHhcchhHH
Q 018433          229 -----------LSQV-----------------------------KPPCSF-----------TQEETEYLTNRIQNGGTEV  257 (356)
Q Consensus       229 -----------~s~~-----------------------------~v~~~~-----------~~~~~~~l~~~v~~~~~~i  257 (356)
                                 |...                             +.+..|           +...+..  +.+.+.-.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~--~~~~~~~~~~  309 (450)
T 3fef_A          232 GESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRK--QDRAEKRQET  309 (450)
T ss_dssp             TTTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHH--HHHHHHHHHH
T ss_pred             cccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHH--HHHHHHHHHH
Confidence                       1000                             000000           0000000  0000000011


Q ss_pred             HhhhccC-CcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHH
Q 018433          258 VEAKAGA-GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYE  332 (356)
Q Consensus       258 i~~~~gk-g~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E  332 (356)
                      .+...+. .-..-..+.+++++++||++|++   .+++++ .++|.|   |+|+++|+||++|++|++++.. ++|++++
T Consensus       310 ~~~~~~~~~~~~~~~~e~~~~ii~aI~~d~~---~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~-g~Lp~~~  385 (450)
T 3fef_A          310 ERLIVQQRGVAEKASGEEGVNIIAALLGLGE---LVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILS-GALPKGV  385 (450)
T ss_dssp             HHHHHTTCCCCCSCCSCCHHHHHHHHTTSCC---EEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCC-CCCCHHH
T ss_pred             HHHhcCCcCcCcCccHHHHHHHHHHHHcCCC---eEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceeccc-CCCCHHH
Confidence            1100000 00000113567899999999975   488887 678986   6899999999999999999988 5999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 018433          333 RIGLEKAKKELAGSIQKGI  351 (356)
Q Consensus       333 ~~~L~~sa~~l~~~~~~~~  351 (356)
                      +++++.-...-+-.++.++
T Consensus       386 ~~l~~~~~~~e~l~veAa~  404 (450)
T 3fef_A          386 EMLAARHISNQEAVADAGL  404 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999876665555555443

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.98  E-value=1.3e-31  Score=268.56  Aligned_cols=290  Identities=18%  Similarity=0.146  Sum_probs=195.7

Q ss_pred             CCCeEEEEcCCCchHHHH--HHHHHhC-CC-CcEEEEEeCCC--chhHHHHHhc-----CCCCCeEEEEeCCCChhhhhC
Q 018433           43 AGFKVAILGAAGGIGQPL--AMLMKIN-PL-VSVLHLYDVVN--TPGVTADISH-----MDTGAVVRGFLGQPQLENALT  111 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~--a~~l~~~-~~-~~el~L~D~~~--~~g~~~dl~~-----~~~~~~v~~~~~t~d~~~al~  111 (356)
                      +++||+|||| |+||++.  +..|+.. ++ ..+|+|+|+++  +.+ +.++.+     ......++.   ++|+++|++
T Consensus         2 ~~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~---ttD~~eal~   76 (480)
T 1obb_A            2 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEK---TMNLDDVII   76 (480)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEE---ECCHHHHhC
Confidence            3579999999 9987665  5577643 34 67999999987  333 222222     112234443   478889999


Q ss_pred             CCcEEEEcCCC------------CCCCCCcH--HH------------HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          112 GMDLVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       112 ~aDiVIi~ag~------------~~~~g~~r--~~------------~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      |||+||+++|.            |+|+|+.|  .+            ++.+|+++++++++.|+++||+||+|++|||+|
T Consensus        77 dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd  156 (480)
T 1obb_A           77 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF  156 (480)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH
T ss_pred             CCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH
Confidence            99999999986            45666554  33            578999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe-cccC---------ccccc--------
Q 018433          166 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILP--------  227 (356)
Q Consensus       166 ~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~hg~---------~~~vp--------  227 (356)
                      ++|+++    ++   +|++||||+|+++. ++++++ +.+|+++++|+++++| ||..         .+.+|        
T Consensus       157 i~t~~~----~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~  227 (480)
T 1obb_A          157 EGTTLV----TR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNHGIWLNRFRYNGGNAYPLLDKWIEE  227 (480)
T ss_dssp             HHHHHH----HH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHHH
T ss_pred             HHHHHH----HH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecchhhhhheeeCCeEcHHHHHHHHHc
Confidence            997654    55   67899999975443 478999 9999999999999999 4443         01111        


Q ss_pred             ---------cccc--CC-----------CCC-------CCC------H------------------HH----HHHHHHHH
Q 018433          228 ---------LLSQ--VK-----------PPC-------SFT------Q------------------EE----TEYLTNRI  250 (356)
Q Consensus       228 ---------~~s~--~~-----------v~~-------~~~------~------------------~~----~~~l~~~v  250 (356)
                               .|+.  ..           ++.       ++.      .                  .+    +.+....+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~~~~~  307 (480)
T 1obb_A          228 KSKDWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEIT  307 (480)
T ss_dssp             TGGGCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             cCccccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHHHHHH
Confidence                     1332  11           111       111      1                  00    11111111


Q ss_pred             hcchhHHHhhhccCC--------cccc----------------hHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---
Q 018433          251 QNGGTEVVEAKAGAG--------SATL----------------SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---  302 (356)
Q Consensus       251 ~~~~~~ii~~~~gkg--------~t~~----------------s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---  302 (356)
                      .+.-.++.+...-+.        .+.|                ..+..++++++||++|++   .++.++ .++|.+   
T Consensus       308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~l  384 (480)
T 1obb_A          308 KKVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALLNDNK---ARFVVNIPNKGIIHGI  384 (480)
T ss_dssp             HHHHHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHHHCCC---EEEEEEEECTTSSTTS
T ss_pred             HHHHHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHhCCC---eEEEEEeeCCceeCCC
Confidence            111122222110001        0111                122678999999999975   366666 567875   


Q ss_pred             CCccEEEEeEEEcCCceEEeccCCC-CCHHHHHH-HHHHHHHHHHHHHHh
Q 018433          303 TELPFFASKVRLGRQGAEEIFQLGP-LNEYERIG-LEKAKKELAGSIQKG  350 (356)
Q Consensus       303 ~~d~~~s~P~~ig~~Gv~~i~~~~~-L~~~E~~~-L~~sa~~l~~~~~~~  350 (356)
                      |+|+++++||+++++|+.++.. ++ |+++.+++ +..-...-+-.++.+
T Consensus       385 p~d~vVEvp~~v~~~G~~p~~~-g~~lP~~~~~l~~~~~~~~e~l~veA~  433 (480)
T 1obb_A          385 DDDVVVEVPALVDKNGIHPEKI-EPPLPDRVVKYYLRPRIMRMEMALEAF  433 (480)
T ss_dssp             CTTSEEEEEEEEETTEEEECCC-SSCCCHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEEEcCCCCEeecc-CCCCCHHHHhHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999988 58 99999999 777665555445444

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.97  E-value=1.5e-31  Score=268.99  Aligned_cols=275  Identities=18%  Similarity=0.148  Sum_probs=185.2

Q ss_pred             CeEEEEcCCCchHHHHH--HHHHhCC----CCcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEeCCCChhhhhCCCc
Q 018433           45 FKVAILGAAGGIGQPLA--MLMKINP----LVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMD  114 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a--~~l~~~~----~~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aD  114 (356)
                      |||+|||| |++|++..  ..++...    ..+||+|+|+++  +++...++.+..  ....+++. .|+|+++|++|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~-~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVV-KTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEE-EESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEE-EeCCHHHHhCCCC
Confidence            79999999 99997753  3355432    357999999988  566666666542  12333433 3579999999999


Q ss_pred             EEEEcCCC-------------------CCCCCCcHHHHH---------------HHHHHHHHHHHHHHHHhCCCcEEEEe
Q 018433          115 LVIIPAGV-------------------PRKPGMTRDDLF---------------NINAGIVRTLCEGIAKCCPNATVNLI  160 (356)
Q Consensus       115 iVIi~ag~-------------------~~~~g~~r~~~~---------------~~N~~i~~~i~~~i~~~~p~a~viv~  160 (356)
                      |||+++|.                   |+|+|++|.++.               .+|++++.+|+++|+++|||||+||+
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            99999874                   346776654432               36999999999999999999999999


Q ss_pred             cCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCC-------
Q 018433          161 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK-------  233 (356)
Q Consensus       161 tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~-------  233 (356)
                      |||++++|+.+    ++.++   .|++|+|+....  ...+++.||+++++|+..+.|-|+. +.+..|+...       
T Consensus       159 tNP~~i~t~a~----~~~~~---~k~vGlC~~~~~--~~~~~~~Lg~~~~~v~~~~~GlNH~-~w~~~~~~~G~D~~P~l  228 (477)
T 3u95_A          159 ANPVFEITQAV----RRWTG---ANIIGFCHGVAG--VYEVFERLGLDPEEVDWQVAGVNHG-IWLNRFRYRGKDAYPLL  228 (477)
T ss_dssp             SSCHHHHHHHH----HHHHC---CCEEEECCGGGH--HHHHHHHTTCCGGGEEEEEEEETTE-EEEEEEEETTEECHHHH
T ss_pred             cChHHHHHHHH----HHhCC---CCeEEECCCHHH--HHHHHHHhCCCHHHcEEEEeecCCC-eeeeeeeecCCcccHHH
Confidence            99999998654    56555   599999975543  3457788999999999999996655 3332222110       


Q ss_pred             ---------------C-------------------C------C-----CCCHH----------------HHHHHHHHHhc
Q 018433          234 ---------------P-------------------P------C-----SFTQE----------------ETEYLTNRIQN  252 (356)
Q Consensus       234 ---------------v-------------------~------~-----~~~~~----------------~~~~l~~~v~~  252 (356)
                                     +                   +      .     .+..+                +...+.+.+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~g~~p~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  308 (477)
T 3u95_A          229 DEWIEKELSKWEPKNPWDTQMSPAAMDMYRFYGMLPIGDTVRNGTWKYHYNLETKKKWFRRFGGIDNEVERPKFHEHLRR  308 (477)
T ss_dssp             HHHHHHHTTTCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGGTSCCGGGTSSHHHHHHHHCTTCCSSSTTHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccCccccccchHHHHHHHHhCCcccccccccccchhhhhHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence                           0                   0      0     00000                00011111111


Q ss_pred             chhHHHhh-------h-----c-----cCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEe
Q 018433          253 GGTEVVEA-------K-----A-----GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASK  311 (356)
Q Consensus       253 ~~~~ii~~-------~-----~-----gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P  311 (356)
                      ....+.+.       .     .     ..+...||  .+++++++||++|++   .++.++ .++|.+   |+|+++++|
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~a~~ii~AI~~~~~---~~~~vNv~N~G~I~nLP~DavVEVp  383 (477)
T 3u95_A          309 ARERLIKLAEEVQENPHLKITEKHPEIFPKGRLSG--EQHIPFINAIANNKR---VRLFLNVENQGALKDFPDDLVMELP  383 (477)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHCTTTSCSSCCCC--CSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSCTTSEEEEE
T ss_pred             HHHHHHHHHHHHhhccchhcccccchhcccccccH--HHHHHHHHHHhCCCC---eEEEEEeecCcccCCCCCCcEEEEE
Confidence            11111110       0     0     01122233  677899999999976   366666 578886   889999999


Q ss_pred             EEEcCCceEEeccCCCCCHHHHHHHH
Q 018433          312 VRLGRQGAEEIFQLGPLNEYERIGLE  337 (356)
Q Consensus       312 ~~ig~~Gv~~i~~~~~L~~~E~~~L~  337 (356)
                      |+|+++|+.++.- +++++...+++.
T Consensus       384 c~Vd~~Gi~P~~v-g~~p~~~~~l~~  408 (477)
T 3u95_A          384 VWVDSSGIHREKV-EPDLTHRIKIFY  408 (477)
T ss_dssp             EEEETTEEEECCC-CSCCCHHHHHHT
T ss_pred             EEEcCCCcccccC-CCCCHHHHHHHH
Confidence            9999999999766 588887777653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.76  E-value=1.7e-08  Score=96.08  Aligned_cols=119  Identities=17%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--H----HHHhcCC-C----C-----CeEEEEeCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T----ADISHMD-T----G-----AVVRGFLGQPQ  105 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~--~----~dl~~~~-~----~-----~~v~~~~~t~d  105 (356)
                      .||+|||| |.+|+.+|..++..|+  +|+|+|+++ .  .+.  .    ..+.... .    .     ..++.   ++|
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~---~~~   80 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS---CTN   80 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE---ECC
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc---ccc
Confidence            49999999 9999999999999999  999999987 1  111  1    1111111 0    0     12333   468


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      +.+++++||+||.+.              -+|+++.+++..+|.+++ |++  |+.||.+.+...-+   . .... .|+
T Consensus        81 l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~a--IlaSNTSsl~is~i---a-~~~~-~p~  139 (319)
T 3ado_A           81 LAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRV--VLSSSSSCLLPSKL---F-TGLA-HVK  139 (319)
T ss_dssp             HHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSS--EEEECCSSCCHHHH---H-TTCT-TGG
T ss_pred             hHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhcc--eeehhhhhccchhh---h-hhcc-CCC
Confidence            888999999999985              577889999999999999 577  44999998775333   2 2232 367


Q ss_pred             CEEEec
Q 018433          185 KLLGVT  190 (356)
Q Consensus       185 kviG~t  190 (356)
                      |++|+.
T Consensus       140 r~ig~H  145 (319)
T 3ado_A          140 QCIVAH  145 (319)
T ss_dssp             GEEEEE
T ss_pred             cEEEec
Confidence            888863

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.48  E-value=6e-07  Score=94.44  Aligned_cols=119  Identities=16%  Similarity=0.223  Sum_probs=84.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--H-HHH---------hcCC-CCCeEEEEeCCCChh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T-ADI---------SHMD-TGAVVRGFLGQPQLE  107 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~--~-~dl---------~~~~-~~~~v~~~~~t~d~~  107 (356)
                      -.||+|||| |.+|+.+|..++..|+  +|+|+|+++  + .+.  . ..+         .... ....++.   ++|+ 
T Consensus       316 i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~-  388 (742)
T 3zwc_A          316 VSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST-  388 (742)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE---ESCG-
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc---cCcH-
Confidence            369999999 9999999999999999  999999987  1 111  0 001         0011 1123443   3565 


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCE
Q 018433          108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  186 (356)
Q Consensus       108 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kv  186 (356)
                      +++++||+||.+.              .+|+++.+++..++.+++ |++  |+.||.+.+...-+    ...+. .|+||
T Consensus       389 ~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~a--IlASNTSsl~i~~i----a~~~~-~p~r~  447 (742)
T 3zwc_A          389 KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGA--FLCTNTSALNVDDI----ASSTD-RPQLV  447 (742)
T ss_dssp             GGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEEECCSSSCHHHH----HTTSS-CGGGE
T ss_pred             HHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCc--eEEecCCcCChHHH----HhhcC-Ccccc
Confidence            7799999999985              577889999999999999 577  44899998765332    23333 36789


Q ss_pred             EEec
Q 018433          187 LGVT  190 (356)
Q Consensus       187 iG~t  190 (356)
                      +|+.
T Consensus       448 ig~H  451 (742)
T 3zwc_A          448 IGTH  451 (742)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            8873

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.39  E-value=4.6e-07  Score=84.50  Aligned_cols=101  Identities=17%  Similarity=0.249  Sum_probs=67.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhc--------C-C-C-------CCeEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH--------M-D-T-------GAVVRGFLGQP  104 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~--------~-~-~-------~~~v~~~~~t~  104 (356)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++  +......+.+        . . .       ...+..   ++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~   77 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---SD   77 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---ES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---eC
Confidence            469999999 9999999999999998  999999986  2111111100        0 0 0       012333   36


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433          105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  166 (356)
Q Consensus       105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~  166 (356)
                      |+.+++++||+||++..              .+.....++...+.+++ |++++  +||....
T Consensus        78 ~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il--~s~tS~~  124 (283)
T 4e12_A           78 DLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF--ATNSSTL  124 (283)
T ss_dssp             CHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred             CHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE--EECCCCC
Confidence            78788999999999862              23445666777787777 56654  4444443

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.24  E-value=4e-06  Score=79.34  Aligned_cols=155  Identities=15%  Similarity=0.188  Sum_probs=96.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++|||.|+||+|++|++++..|+..|.  +|+.+|++...      ...   ..+.. .....++.++++++|+||.+|+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~------~~~---~~~~~Dl~d~~~~~~~~~~~d~vih~A~   86 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG------TGG---EEVVGSLEDGQALSDAIMGVSAVLHLGA   86 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS------SCC---SEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC------CCc---cEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence            346999999999999999999999887  89999987522      000   11111 0011235577899999999998


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--------CCC-ccHHHHHHHHHHhCCCCCCCEEEechh
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--------PVN-STVPIAAEVFKKAGTYDPKKLLGVTML  192 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN--------Pv~-~~t~~~~~~~~~~~~~~~~kviG~t~l  192 (356)
                      ..........+.+..|+.....+++.+.+.... .||++|.        +.. .+.        +....++...+|.+..
T Consensus        87 ~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~--------E~~~~~~~~~Y~~sK~  157 (347)
T 4id9_A           87 FMSWAPADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFLPVT--------EDHPLCPNSPYGLTKL  157 (347)
T ss_dssp             CCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSSSBC--------TTSCCCCCSHHHHHHH
T ss_pred             ccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCCCcC--------CCCCCCCCChHHHHHH
Confidence            654333344677889999999999999886544 4555543        111 111        1122334445555555


Q ss_pred             hHHHHHHHHHHHhCCCCCCCc-ccEE
Q 018433          193 DVVRANTFVAEVLGLDPRDVD-VPVV  217 (356)
Q Consensus       193 d~~R~~~~la~~l~v~~~~v~-~~vi  217 (356)
                      ...++-..+++..|++..-++ ..++
T Consensus       158 ~~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          158 LGEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHHhcCCceEEEccceEe
Confidence            555555666666676655554 4455

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.23  E-value=1e-05  Score=80.76  Aligned_cols=118  Identities=15%  Similarity=0.196  Sum_probs=74.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch-hHH--HH----------HhcCCC-CCeEEEEeCCCChh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP-GVT--AD----------ISHMDT-GAVVRGFLGQPQLE  107 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~-g~~--~d----------l~~~~~-~~~v~~~~~t~d~~  107 (356)
                      .+||+|||+ |.+|+.+|..|+..|+  +|+++|+++  +. +..  .+          +..... ....+.   ++|+ 
T Consensus        37 ~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i---~~~~-  109 (463)
T 1zcj_A           37 VSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST-  109 (463)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE---ESCG-
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh---cCCH-
Confidence            468999999 9999999999999988  999999986  11 110  00          101000 112332   3566 


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCE
Q 018433          108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  186 (356)
Q Consensus       108 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kv  186 (356)
                      +++++||+||++..              .+..+.+++...+.+++ |+++|  +||...+-...+    ...... +.++
T Consensus       110 ~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~~~~l----a~~~~~-~~~~  168 (463)
T 1zcj_A          110 KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDDI----ASSTDR-PQLV  168 (463)
T ss_dssp             GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHH----HTTSSC-GGGE
T ss_pred             HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcCHHHH----HHHhcC-Ccce
Confidence            68999999999862              23455666777788777 46654  457776554322    222222 4567


Q ss_pred             EEe
Q 018433          187 LGV  189 (356)
Q Consensus       187 iG~  189 (356)
                      +|+
T Consensus       169 ig~  171 (463)
T 1zcj_A          169 IGT  171 (463)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            776

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.23  E-value=8.6e-06  Score=77.15  Aligned_cols=167  Identities=15%  Similarity=0.071  Sum_probs=102.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC---CCeEEEEeC----CCChhhhhCCCc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLG----QPQLENALTGMD  114 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~---~~~v~~~~~----t~d~~~al~~aD  114 (356)
                      +|||.|+||+|++|++++..|+..|.  +|+.+|+..  ......++.....   ...+..+.+    ..++.++++++|
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  102 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD  102 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence            56999999999999999999999887  999999865  2222233332110   022333221    123456788999


Q ss_pred             EEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-C-----C-ccHHHHHHHHHHhCCCCCCC
Q 018433          115 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-V-----N-STVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       115 iVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v-----~-~~t~~~~~~~~~~~~~~~~k  185 (356)
                      +||.+|+......  .+..+.+..|+.....+++.+.+.... .+|.+|.. +     + .+.        +.....+..
T Consensus       103 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~--------E~~~~~p~~  173 (351)
T 3ruf_A          103 HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-SFTYAASSSTYGDHPALPKV--------EENIGNPLS  173 (351)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBC--------TTCCCCCCS
T ss_pred             EEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEecHHhcCCCCCCCCc--------cCCCCCCCC
Confidence            9999998532111  234456788999999999999887644 44444321 1     1 110        111112233


Q ss_pred             EEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          186 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       186 viG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      .+|.+.+...++-..+++..|++..-++ +.++|...
T Consensus       174 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  210 (351)
T 3ruf_A          174 PYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQ  210 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTC
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCC
Confidence            4555555555666666777788766664 56777544

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.22  E-value=6.3e-06  Score=82.04  Aligned_cols=119  Identities=17%  Similarity=0.258  Sum_probs=76.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH--H---H-HHhcCC-C--------CCeEEEEeCCCChhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--T---A-DISHMD-T--------GAVVRGFLGQPQLEN  108 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~--~---~-dl~~~~-~--------~~~v~~~~~t~d~~~  108 (356)
                      .+||+|||+ |.+|+.+|..|+..|+  +|+++|+++.++.  .   + .+.... .        ...++.   ++|+ +
T Consensus        54 i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~---t~dl-~  126 (460)
T 3k6j_A           54 VNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI---TSDF-H  126 (460)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE---ESCG-G
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE---eCCH-H
Confidence            479999999 9999999999999998  9999999863111  0   1 111111 0        123443   3576 5


Q ss_pred             hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEE
Q 018433          109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  187 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kvi  187 (356)
                      ++++||+||.+..              .+..+.+++...+.+++ |+++|  +||...+-..   ++ ..... .+.+++
T Consensus       127 al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIl--asnTSsl~i~---~i-a~~~~-~p~r~i  185 (460)
T 3k6j_A          127 KLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIF--GTNTSSLDLN---EI-SSVLR-DPSNLV  185 (460)
T ss_dssp             GCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCHH---HH-HTTSS-SGGGEE
T ss_pred             HHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEE--EecCCChhHH---HH-HHhcc-CCcceE
Confidence            8999999999852              34566677788888888 56654  5665554322   21 22222 245777


Q ss_pred             Eec
Q 018433          188 GVT  190 (356)
Q Consensus       188 G~t  190 (356)
                      |+-
T Consensus       186 G~H  188 (460)
T 3k6j_A          186 GIH  188 (460)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            763

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.22  E-value=6e-06  Score=82.15  Aligned_cols=108  Identities=18%  Similarity=0.217  Sum_probs=71.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--C--------------CCeEEEEeCCCChhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------GAVVRGFLGQPQLEN  108 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--~--------------~~~v~~~~~t~d~~~  108 (356)
                      |||+|||+ |.+|..+|..|+..|+  +|+++|+++..  +..+....  .              ...++.   ++|+.+
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~--v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~---t~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNK--IEQLNSGTIPIYEPGLEKMIARNVKAGRLRF---GTEIEQ   74 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE---ESCHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHH--HHHHHcCCCcccCCCHHHHHHhhcccCcEEE---ECCHHH
Confidence            79999999 9999999999999988  99999998621  11122110  0              123443   468888


Q ss_pred             hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCCc
Q 018433          109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS-NPVNS  166 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t-NPv~~  166 (356)
                      ++++||+||++.+.|...+.      ..++..+.++++.|.++. ++.+|+..| .|.+.
T Consensus        75 a~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             HHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence            89999999999877654332      223344566666777666 455555443 45544

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.19  E-value=8.8e-06  Score=80.48  Aligned_cols=118  Identities=19%  Similarity=0.262  Sum_probs=73.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--C--------------CCeEEEEeCCCChhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------GAVVRGFLGQPQLEN  108 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--~--------------~~~v~~~~~t~d~~~  108 (356)
                      |||+|||+ |.+|..++..|+..|.  +|+++|+++..  +..+....  .              ...++.   ++|+.+
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            69999999 9999999999999887  89999997511  11222210  0              112443   467778


Q ss_pred             hhCCCcEEEEcCCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHhC-C---CcEEEEe-cCCCCccHHHHHHHHHH
Q 018433          109 ALTGMDLVIIPAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCC-P---NATVNLI-SNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~-p---~a~viv~-tNPv~~~t~~~~~~~~~  177 (356)
                      ++++||+||++...|... |..       ++..+.+.++.|.++. |   +.+|+.. |+|.+.....+.+.+.+
T Consensus        73 ~~~~aDvviiaVptp~~~~~~~-------dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNGDL-------DLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSB-------CCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             HhccCCEEEEEcCCCcccCCCc-------chHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            899999999998766432 221       1222334444444432 4   5666655 68887633333334433

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.18  E-value=8.1e-06  Score=73.11  Aligned_cols=110  Identities=16%  Similarity=0.128  Sum_probs=76.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCC-eEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      .|||.|+||+|++|++++..|+..|.  +|++++++.....  .+.+..  . .+....-+.++.+++.++|+||.++|.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~--~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERG--ASDIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTT--CSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCC--CceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            57999999999999999999999887  9999998762211  122111  1 111100014567889999999999986


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ...  ......+..|+.....+++.+++.... .||++|.
T Consensus        95 ~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  131 (236)
T 3e8x_A           95 GPH--TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSS  131 (236)
T ss_dssp             CTT--SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             CCC--CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            532  345566778999999999999877643 5555554

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.18  E-value=6.2e-06  Score=82.74  Aligned_cols=127  Identities=18%  Similarity=0.206  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC---------------CCeEEEEeCCCChh
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---------------GAVVRGFLGQPQLE  107 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~---------------~~~v~~~~~t~d~~  107 (356)
                      ++|||+|||+ |.||..+|..|+..+...+|+++|+++.  .+..+.....               ...++.   ++|+.
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~--~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~~~   81 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTA--KIAEWNSDKLPIYEPGLDEIVFAARGRNLFF---SSDIP   81 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHH--HHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHH
Confidence            3579999999 9999999999998743339999999752  1122222110               012333   46777


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEe-cCCCCccHHHHHHHHHH
Q 018433          108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       108 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~-tNPv~~~t~~~~~~~~~  177 (356)
                      +++++||+||++.+.|.+.+.++.+ -..++..+.+.++.|.++.+ +.+|+.. |+|.+..-.+ .+.+.+
T Consensus        82 ~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l-~~~l~~  151 (481)
T 2o3j_A           82 KAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESI-GCILRE  151 (481)
T ss_dssp             HHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHH-HHHHHH
T ss_pred             HHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHH-HHHHHH
Confidence            8899999999998877543322111 01223345566677777664 5555443 6888765433 344433

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.18  E-value=1.2e-05  Score=77.45  Aligned_cols=102  Identities=15%  Similarity=0.201  Sum_probs=71.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC--------CCCCeEEEEeCCCChhhhhCCCc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--------DTGAVVRGFLGQPQLENALTGMD  114 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~--------~~~~~v~~~~~t~d~~~al~~aD  114 (356)
                      .+|||+|||+ |.+|.+++..|+..+.  +|.++|+++.....+.-.+.        .....+..   ++|+.+++++||
T Consensus        28 ~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~---t~d~~ea~~~aD  101 (356)
T 3k96_A           28 FKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA---YCDLKASLEGVT  101 (356)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE---ESCHHHHHTTCC
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE---ECCHHHHHhcCC
Confidence            3589999999 9999999999999887  89999997521111111111        01123443   367888999999


Q ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433          115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  166 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~  166 (356)
                      +||++.  |              ...++++++.+..+. |+.+++.++|-.+.
T Consensus       102 vVilaV--p--------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~  138 (356)
T 3k96_A          102 DILIVV--P--------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAK  138 (356)
T ss_dssp             EEEECC--C--------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBT
T ss_pred             EEEECC--C--------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCc
Confidence            999984  2              124667778888776 57788888886654

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.17  E-value=5e-06  Score=78.65  Aligned_cols=170  Identities=12%  Similarity=0.054  Sum_probs=99.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CChhhhhCC--CcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTG--MDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~--aDiV  116 (356)
                      ++|||.|+||+|++|++++..|+..|...+++.+|..........+........+..+.+.    .++.+++++  +|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V  102 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVI  102 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEE
Confidence            3579999999999999999999988854488888876511111122222112334433221    234456666  9999


Q ss_pred             EEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC--------CCccHHHHHHHHHHhCCCCCCCE
Q 018433          117 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP--------VNSTVPIAAEVFKKAGTYDPKKL  186 (356)
Q Consensus       117 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP--------v~~~t~~~~~~~~~~~~~~~~kv  186 (356)
                      |.+|+.....  .....+.+..|+.....+++.+.+.... .+|++|..        ...++        +.....+...
T Consensus       103 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~~~~~~~~~~--------E~~~~~p~~~  173 (346)
T 4egb_A          103 VNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYGSLGKTGRFT--------EETPLAPNSP  173 (346)
T ss_dssp             EECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGCCCCSSCCBC--------TTSCCCCCSH
T ss_pred             EECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhCCCCcCCCcC--------CCCCCCCCCh
Confidence            9999864321  1234456789999999999999887543 45544421        11110        1112223344


Q ss_pred             EEechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          187 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       187 iG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      +|.+.....++-..+++..|++..-++ +.++|...
T Consensus       174 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  209 (346)
T 4egb_A          174 YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ  209 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence            555555555566666666787765554 55677543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.14  E-value=1.2e-05  Score=75.31  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHH------HH-H-hcCCC-------------CCeEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT------AD-I-SHMDT-------------GAVVRG   99 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~------~d-l-~~~~~-------------~~~v~~   99 (356)
                      +.+||+|||+ |.+|+.+|..|+..|+  +|+++|+++  +....      ++ + .....             ...++.
T Consensus        14 ~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           14 IVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            3468999999 9999999999999887  999999986  21110      00 1 11100             012443


Q ss_pred             EeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433          100 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  166 (356)
Q Consensus       100 ~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~  166 (356)
                         ++|+.+++++||+||++..              .+..+.+++...+.+++ |+++|  +||...+
T Consensus        91 ---~~~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~i  139 (302)
T 1f0y_A           91 ---STDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTSSL  139 (302)
T ss_dssp             ---ESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCSSS
T ss_pred             ---ecCHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCCC
Confidence               3577778999999999852              22334456667777776 46644  4555443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.12  E-value=4.8e-06  Score=81.19  Aligned_cols=130  Identities=18%  Similarity=0.315  Sum_probs=67.2

Q ss_pred             hHHHHhHHHHHhccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCC------CcEEEEEeC
Q 018433            5 SEANQRIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPL------VSVLHLYDV   78 (356)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~------~~el~L~D~   78 (356)
                      |.+++|+.+.+.|+-++.-+-.       ..+...-..+|.||+|||| |.-|+++|..|+.++.      ..+|.|+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r   73 (391)
T 4fgw_A            2 SAAADRLNLTSGHLNAGRKRSS-------SSVSLKAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVF   73 (391)
T ss_dssp             --------------------------------------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECC
T ss_pred             cchhhHHHHHhhhhcccccccc-------ccccccccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEc
Confidence            5578899999999988654432       1122222356789999999 9999999999987642      136888877


Q ss_pred             CC-c--hhHHHHHh--cCC--------CCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 018433           79 VN-T--PGVTADIS--HMD--------TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC  145 (356)
Q Consensus        79 ~~-~--~g~~~dl~--~~~--------~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~  145 (356)
                      ++ .  +..+..++  |..        .+..+..   ++|+.+++++||+||++.  |              .+.+++++
T Consensus        74 ~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~---t~dl~~al~~ad~ii~av--P--------------s~~~r~~l  134 (391)
T 4fgw_A           74 EEEINGEKLTEIINTRHQNVKYLPGITLPDNLVA---NPDLIDSVKDVDIIVFNI--P--------------HQFLPRIC  134 (391)
T ss_dssp             CCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE---ESCHHHHHTTCSEEEECS--C--------------GGGHHHHH
T ss_pred             chHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEE---eCCHHHHHhcCCEEEEEC--C--------------hhhhHHHH
Confidence            65 1  22232233  221        1234554   479999999999999974  3              22366777


Q ss_pred             HHHHHhC-CCcEEEEec
Q 018433          146 EGIAKCC-PNATVNLIS  161 (356)
Q Consensus       146 ~~i~~~~-p~a~viv~t  161 (356)
                      +++..+- ++..+|.++
T Consensus       135 ~~l~~~~~~~~~iv~~~  151 (391)
T 4fgw_A          135 SQLKGHVDSHVRAISCL  151 (391)
T ss_dssp             HHHTTTSCTTCEEEECC
T ss_pred             HHhccccCCCceeEEec
Confidence            7777766 466666665

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.12  E-value=8.8e-06  Score=75.92  Aligned_cols=163  Identities=16%  Similarity=0.136  Sum_probs=95.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      |||.|+||+|++|++++..|+..|.  +|+.++++.....   +..... ..++.    ..++.++++++|+||.+++..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~~~~~~~Dl~----~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---INDYEYRVSDYT----LEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------CCEEEECCCC----HHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCceEEEEcccc----HHHHHHhhcCCCEEEEccccC
Confidence            6999999999999999999999887  9999998741111   221100 01111    134567889999999998865


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC-CCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHH
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA  202 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN-Pv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la  202 (356)
                      ...  ...+....|+.....+++.+.+.... .+|.+|. -+..-..  ...+.+.....+...+|.+.....++-..++
T Consensus        74 ~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~-r~v~~SS~~vyg~~~--~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~  148 (311)
T 3m2p_A           74 GSQ--GKISEFHDNEILTQNLYDACYENNIS-NIVYASTISAYSDET--SLPWNEKELPLPDLMYGVSKLACEHIGNIYS  148 (311)
T ss_dssp             CSS--SCGGGTHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCCGG--GCSBCTTSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCC--ChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCC--CCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Confidence            332  33445678999999999999887654 3444442 1110000  0000011112233445555555555555666


Q ss_pred             HHhCCCCCCCc-ccEEeccc
Q 018433          203 EVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       203 ~~l~v~~~~v~-~~viG~hg  221 (356)
                      +..|++..-++ ..++|...
T Consensus       149 ~~~g~~~~ilRp~~v~G~~~  168 (311)
T 3m2p_A          149 RKKGLCIKNLRFAHLYGFNE  168 (311)
T ss_dssp             HHSCCEEEEEEECEEECSCC
T ss_pred             HHcCCCEEEEeeCceeCcCC
Confidence            66676655553 45666443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.11  E-value=1.7e-05  Score=79.45  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=75.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCc--hhHHHHHhcCCC------------------CCeEEEEe
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMDT------------------GAVVRGFL  101 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~--~g~~~dl~~~~~------------------~~~v~~~~  101 (356)
                      +.|||+|||+ |.+|..+|..|+.. |+. +|+++|+++.  .+.+..+.....                  ...++.  
T Consensus        17 ~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~--   92 (478)
T 3g79_A           17 PIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC--   92 (478)
T ss_dssp             SCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE--
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE--
Confidence            4589999999 99999999999998 754 8999999873  234444544210                  123443  


Q ss_pred             CCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHH
Q 018433          102 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPI  170 (356)
Q Consensus       102 ~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~t~~  170 (356)
                       |+| .+++++||+||++.+.|...+.++    ..++..+...++.|.++. |+.+|++- |-|.+..-.+
T Consensus        93 -ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v  157 (478)
T 3g79_A           93 -TPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGM  157 (478)
T ss_dssp             -ESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTH
T ss_pred             -eCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHH
Confidence             456 589999999999987775433210    012233445555666655 45555444 4565554333

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.11  E-value=3.4e-05  Score=72.28  Aligned_cols=117  Identities=13%  Similarity=0.015  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEE-e----CCCChhhhhCCCc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGF-L----GQPQLENALTGMD  114 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~-~----~t~d~~~al~~aD  114 (356)
                      .+.++|.|+||+|++|++++..|+..|.  +|+++|++...  .....+.+.. ...+..+ .    ...++.++++++|
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCC
Confidence            3457999999999999999999999887  99999986511  1111111100 0122222 1    1234556678999


Q ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      +||.+|+.... +.+..+.+..|+.....+++.+.+......||++|.
T Consensus        86 ~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           86 GVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            99999986532 234556788999999999998875333356666654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.11  E-value=6e-06  Score=73.98  Aligned_cols=101  Identities=19%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             hhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhC
Q 018433           35 KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT  111 (356)
Q Consensus        35 ~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L-~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~  111 (356)
                      .|....++.+|||+|||+ |.+|..++..|...+.  ++.+ +|+++  +...+.++.     ....    +++ .++++
T Consensus        14 ~~~~~~~m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g-----~~~~----~~~-~~~~~   80 (220)
T 4huj_A           14 GTENLYFQSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFG-----ASVK----AVE-LKDAL   80 (220)
T ss_dssp             ---CTTGGGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHT-----TTEE----ECC-HHHHT
T ss_pred             cccchhhhcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhC-----CCcc----cCh-HHHHh
Confidence            345555566789999998 9999999999998887  7888 89876  222222221     1111    123 46789


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      ++|+||++.-    +            ..+.++++.+.. .++.+|+.++||..
T Consensus        81 ~aDvVilavp----~------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           81 QADVVILAVP----Y------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             TSSEEEEESC----G------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             cCCEEEEeCC----h------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            9999999852    1            113345555544 45678888899985

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.10  E-value=8.8e-06  Score=80.40  Aligned_cols=136  Identities=21%  Similarity=0.215  Sum_probs=67.9

Q ss_pred             HhccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--
Q 018433           15 SAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--   92 (356)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--   92 (356)
                      |..|.|..-.|++|.--.+..+.    .+.|||+|||+ |.+|..+|..|+. +.  +|+++|+++.  .+..+....  
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~r~----~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~--~v~~l~~g~~~   80 (432)
T 3pid_A           11 SSGLVPRGSHMASMTGGQQMGRG----SEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQA--KVDMLNQKISP   80 (432)
T ss_dssp             ----------------------------CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHH--HHHHHHTTCCS
T ss_pred             cCCcccccchhhhccCCcccccc----cCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHH--HhhHHhccCCc
Confidence            44577888888887644333332    24689999999 9999999999887 76  9999999861  111122210  


Q ss_pred             ------------CCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 018433           93 ------------TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  160 (356)
Q Consensus        93 ------------~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  160 (356)
                                  ....++.   ++|+++++++||+||++...+........     ++..+.+.++.|.+..|+.+|+.-
T Consensus        81 i~e~~l~~ll~~~~~~l~~---ttd~~ea~~~aDvViiaVPt~~~~~~~~~-----Dl~~V~~v~~~i~~l~~g~iVV~~  152 (432)
T 3pid_A           81 IVDKEIQEYLAEKPLNFRA---TTDKHDAYRNADYVIIATPTDYDPKTNYF-----NTSTVEAVIRDVTEINPNAVMIIK  152 (432)
T ss_dssp             SCCHHHHHHHHHSCCCEEE---ESCHHHHHTTCSEEEECCCCEEETTTTEE-----ECHHHHHHHHHHHHHCTTSEEEEC
T ss_pred             cccccHHHHHhhccCCeEE---EcCHHHHHhCCCEEEEeCCCccccccccc-----cHHHHHHHHHHHHhcCCCcEEEEe
Confidence                        0113443   46888999999999998644321111111     112233333444444567766654


Q ss_pred             -cCCCCccH
Q 018433          161 -SNPVNSTV  168 (356)
Q Consensus       161 -tNPv~~~t  168 (356)
                       |.|.+..-
T Consensus       153 STv~pgtt~  161 (432)
T 3pid_A          153 STIPVGFTR  161 (432)
T ss_dssp             SCCCTTHHH
T ss_pred             CCCChHHHH
Confidence             46766543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.10  E-value=1.1e-05  Score=78.90  Aligned_cols=112  Identities=18%  Similarity=0.268  Sum_probs=71.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC--------------CCeEEEEeCCCChhhhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--------------GAVVRGFLGQPQLENAL  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~--------------~~~v~~~~~t~d~~~al  110 (356)
                      |||+|||+ |.||..++..|+. +.  +|+++|+++.  .+..+.....              ...+..   ++|+.+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~--~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPS--KVDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHH--HHHHHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            69999999 9999999999988 75  9999999751  1112222110              012332   35777889


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCCccHHH
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPI  170 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNPv~~~t~~  170 (356)
                      ++||+||++...+...+..+.|+     ..+.++++.+.+..|+.+|+. .|||.+....+
T Consensus        72 ~~aDvviiavpt~~~~~~~~~dl-----~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l  127 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFDT-----QHVETVIKEVLSVNSHATLIIKSTIPIGFITEM  127 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEECC-----HHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHH
T ss_pred             cCCCEEEEecCCCcccCCCCccH-----HHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHH
Confidence            99999999976653222222221     223344444444447777666 68999876443

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.10  E-value=1.8e-05  Score=78.32  Aligned_cols=120  Identities=18%  Similarity=0.185  Sum_probs=79.2

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----------------CCCeEEEEeCC
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQ  103 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~t  103 (356)
                      .+.++.+|+|||. |+||..+|..|+..|+  +++.+|+++.  .+..|+...                ...+++.   +
T Consensus        17 ~~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~--kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~---t   88 (444)
T 3vtf_A           17 RGSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPS--IVERLRAGRPHIYEPGLEEALGRALSSGRLSF---A   88 (444)
T ss_dssp             TTCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---C
T ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHH--HHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE---E
Confidence            3445669999999 9999999999998888  9999999861  111122110                1234553   5


Q ss_pred             CChhhhhCCCcEEEEcCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCCccHHH
Q 018433          104 PQLENALTGMDLVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPI  170 (356)
Q Consensus       104 ~d~~~al~~aDiVIi~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNPv~~~t~~  170 (356)
                      +|..+++++||++|++.+.|.+... ..+.+   -....+.+++.++..++..+|++ .|-|++..-.+
T Consensus        89 t~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~---v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~  154 (444)
T 3vtf_A           89 ESAEEAVAATDATFIAVGTPPAPDGSADLRY---VEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGL  154 (444)
T ss_dssp             SSHHHHHHTSSEEEECCCCCBCTTSSBCCHH---HHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTH
T ss_pred             cCHHHHHhcCCceEEEecCCCCCCCCCCcHH---HHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHH
Confidence            6888999999999999988865432 22222   22345667777766555554444 36787765433

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.10  E-value=5.4e-06  Score=83.23  Aligned_cols=101  Identities=23%  Similarity=0.345  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHH----HHhcCCC-C-----------CeEEEEeCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA----DISHMDT-G-----------AVVRGFLGQPQ  105 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~----dl~~~~~-~-----------~~v~~~~~t~d  105 (356)
                      .+||+|||+ |.+|+.+|..|+..|+  +|+++|+++  +.....    -+..... .           ..++.   ++|
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VTD   78 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---ECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eCC
Confidence            459999999 9999999999999998  999999987  211111    1111110 0           12443   356


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                      + +++++||+||.+..              .+..+.+++...+.+++ |++++  +||...+-
T Consensus        79 ~-~~~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntSti~  124 (483)
T 3mog_A           79 I-HALAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTLL--TTNTSSIS  124 (483)
T ss_dssp             G-GGGGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC
T ss_pred             H-HHhcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcEE--EecCCCCC
Confidence            6 57999999999852              34455667777888887 46644  56655544

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.09  E-value=1.1e-05  Score=75.72  Aligned_cols=169  Identities=14%  Similarity=0.047  Sum_probs=98.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-CC---hhhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al~~aDiVIi~  119 (356)
                      .|||.|+||+|++|++++..|+..+...+|+.+|+....+....+.+......+..+... +|   +.+++.++|+||.+
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            579999999999999999999887632389999975411100111111111233332211 22   34566899999999


Q ss_pred             CCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-------CccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          120 AGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-------NSTVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       120 ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv-------~~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      ||.....  ..+..+.+..|+.....+++.+.+......||++|...       ..+        .+....++...+|.+
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~--------~E~~~~~~~~~Y~~s  154 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSF--------TENDRLMPSSPYSAT  154 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCB--------CTTBCCCCCSHHHHH
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCc--------CCCCCCCCCCccHHH
Confidence            9864210  01234567889999999999999885445666665311       001        011123333445555


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      .....++-..+++.+|++..-++ +.++|..
T Consensus       155 K~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~  185 (336)
T 2hun_A          155 KAASDMLVLGWTRTYNLNASITRCTNNYGPY  185 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECEEESTT
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeeeeeCcC
Confidence            55555555666666676554443 4456654

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.09  E-value=2.1e-05  Score=73.03  Aligned_cols=164  Identities=18%  Similarity=0.135  Sum_probs=97.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC---CCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~~al~~aDiVIi~ag  121 (356)
                      |||.|+||+|++|++++..|+..|.  +|+.+|++.....  +..+    ..+..+..   ..++.+++++ |+||.+|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~----~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVN----PSAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSC----TTSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcC----CCceEEECccccHHHHhhcCC-CEEEECCC
Confidence            6999999999999999999999887  9999998651110  0111    11111110   1124456677 99999998


Q ss_pred             CCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-CCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHH
Q 018433          122 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  198 (356)
Q Consensus       122 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~  198 (356)
                      .+...  .......+..|+.....+++.+.+.... .+|++|.- +..-..  ...+.+....++...+|.+.....++-
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~--~~~~~e~~~~~p~~~Y~~sK~~~e~~~  148 (312)
T 3ko8_A           72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDAD--VIPTPEEEPYKPISVYGAAKAAGEVMC  148 (312)
T ss_dssp             SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCC--CCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence            64321  2335566788999999999999887644 44444321 100000  000001112334445555555555666


Q ss_pred             HHHHHHhCCCCCCCc-ccEEecc
Q 018433          199 TFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       199 ~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      ..+++.+|++..-++ +.++|..
T Consensus       149 ~~~~~~~g~~~~~lrp~~v~g~~  171 (312)
T 3ko8_A          149 ATYARLFGVRCLAVRYANVVGPR  171 (312)
T ss_dssp             HHHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHHhCCCEEEEeeccccCcC
Confidence            667777777665554 4677764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.08  E-value=7.5e-06  Score=86.13  Aligned_cols=101  Identities=23%  Similarity=0.361  Sum_probs=68.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch-hHH--HH-HhcC---C---------CCCeEEEEeCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP-GVT--AD-ISHM---D---------TGAVVRGFLGQPQ  105 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~-g~~--~d-l~~~---~---------~~~~v~~~~~t~d  105 (356)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++  +. +..  .+ +...   .         ....++.   ++|
T Consensus       312 ~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~d  385 (725)
T 2wtb_A          312 IKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG---SLD  385 (725)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEE---ESS
T ss_pred             CcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEE---eCC
Confidence            468999999 9999999999999998  999999986  11 110  11 1100   0         0123443   357


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCcc
Q 018433          106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST  167 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~  167 (356)
                      + +++++||+||++.              ..+..+.+++...+.++++ +++  ++||...+-
T Consensus       386 ~-~~~~~aDlVIeaV--------------pe~~~vk~~v~~~l~~~~~~~~I--lasntStl~  431 (725)
T 2wtb_A          386 Y-ESFRDVDMVIEAV--------------IENISLKQQIFADLEKYCPQHCI--LASNTSTID  431 (725)
T ss_dssp             S-GGGTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCE--EEECCSSSC
T ss_pred             H-HHHCCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcE--EEeCCCCCC
Confidence            6 7899999999985              2345556677778888885 553  367776553

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.06  E-value=2.9e-05  Score=73.06  Aligned_cols=114  Identities=13%  Similarity=0.123  Sum_probs=72.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch--hHHHHHhcCCCCCeEEEEe----CCCChhhhhCCCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP--GVTADISHMDTGAVVRGFL----GQPQLENALTGMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~--g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDi  115 (356)
                      .+||.|+||+|++|++++..|+..|.  +|+.++++.  ..  ....++...   ..+..+.    ...++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQEL---GDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGG---SCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCC---CcEEEEecCCCChHHHHHHHcCCCE
Confidence            36899999999999999999999887  888776654  11  111223211   1222221    12345678899999


Q ss_pred             EEEcCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          116 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       116 VIi~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ||.+|+.......+ ..+++..|+.....+.+.+.+...-..||++|.
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS  131 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS  131 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence            99998753211111 123678899999999999887642345666654

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.06  E-value=5.4e-05  Score=71.25  Aligned_cols=118  Identities=13%  Similarity=0.053  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCC-CCeEEEEe----CCCChhhhhCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-GAVVRGFL----GQPQLENALTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~-~~~v~~~~----~t~d~~~al~~aDiV  116 (356)
                      +.++|.|+||+|++|++++..|+..|.  +|+.++++.. .....++.+... ...+..+.    ...++.++++++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            346899999999999999999999887  8887777652 111222221110 01222221    123456788999999


Q ss_pred             EEcCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          117 IIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       117 Ii~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      |.+|+.......+ ..+.+..|+.....+.+.+.+...-..||++|.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS  128 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS  128 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence            9998754211122 234678899999999999888753345666654

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.06  E-value=1.2e-05  Score=75.59  Aligned_cols=166  Identities=15%  Similarity=0.029  Sum_probs=95.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHHHHhcCCCCCeEEEEeCC-C---ChhhhhCC-
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLGQ-P---QLENALTG-  112 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~t-~---d~~~al~~-  112 (356)
                      +++++||.|+||+|++|++++..|+..|.  +|+.+|++...   ....++..   ...+..+.+. +   ++.+++++ 
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~   85 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIKA   85 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHHc
Confidence            45678999999999999999999999886  99999987521   11122211   1223332211 2   23445665 


Q ss_pred             -CcEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-------ccHHHHHHHHHHhCCCC
Q 018433          113 -MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN-------STVPIAAEVFKKAGTYD  182 (356)
Q Consensus       113 -aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~-------~~t~~~~~~~~~~~~~~  182 (356)
                       .|+||.+||.....  ..+....+..|+.....+++.+.+......+|.+|...-       .++        +.....
T Consensus        86 ~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~--------E~~~~~  157 (335)
T 1rpn_A           86 QPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQD--------ENTPFY  157 (335)
T ss_dssp             CCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBC--------TTSCCC
T ss_pred             CCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCC--------cccCCC
Confidence             59999999864311  123456678899999999999988764356666653210       110        011122


Q ss_pred             CCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEec
Q 018433          183 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGG  219 (356)
Q Consensus       183 ~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~  219 (356)
                      +...+|.+.....++-..+++.++++..-++ ..++|.
T Consensus       158 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp  195 (335)
T 1rpn_A          158 PRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESP  195 (335)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             CCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCC
Confidence            2334455544445555556666676654333 334554

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.03  E-value=1e-05  Score=76.08  Aligned_cols=120  Identities=19%  Similarity=0.213  Sum_probs=73.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHH-hcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADI-SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl-~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..+||+|||+ |.+|+.+|..|+ .|+  +|+++|+++ ....+.+. .+.. ...++.   ++|+. ++++||+||.+.
T Consensus        11 ~~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~-~~~i~~---~~~~~-~~~~aDlVieav   81 (293)
T 1zej_A           11 HHMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEEL-LSKIEF---TTTLE-KVKDCDIVMEAV   81 (293)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGG-GGGEEE---ESSCT-TGGGCSEEEECC
T ss_pred             CCCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHH-hCCeEE---eCCHH-HHcCCCEEEEcC
Confidence            4579999999 999999999999 888  999999986 21122222 1111 123443   24664 489999999985


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhh
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD  193 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld  193 (356)
                      .              .+..+.+.+...+... |++++  +||...+-...+    ...... +.|++|+..++
T Consensus        82 p--------------e~~~vk~~l~~~l~~~-~~~Il--asntSti~~~~~----a~~~~~-~~r~~G~Hf~~  132 (293)
T 1zej_A           82 F--------------EDLNTKVEVLREVERL-TNAPL--CSNTSVISVDDI----AERLDS-PSRFLGVHWMN  132 (293)
T ss_dssp             C--------------SCHHHHHHHHHHHHTT-CCSCE--EECCSSSCHHHH----HTTSSC-GGGEEEEEECS
T ss_pred             c--------------CCHHHHHHHHHHHhcC-CCCEE--EEECCCcCHHHH----HHHhhc-ccceEeEEecC
Confidence            2              3344455555567777 88865  455544332211    222222 45777775433

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.02  E-value=1.3e-05  Score=75.33  Aligned_cols=111  Identities=20%  Similarity=0.184  Sum_probs=70.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi  118 (356)
                      ..|||.|+||+|++|++++..|+..|.  +|+++|++.....  ++.+.    .+..+.+    ..++.++++++|+||.
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~l~~~----~~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQIQ--RLAYL----EPECRVAEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCGG--GGGGG----CCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhhh--hhccC----CeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            347999999999999999999999887  9999998762111  12211    1111111    1234567899999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      +++..........+.+..|+.....+++.+.+.... .+|.+|.
T Consensus        84 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS  126 (342)
T 2x4g_A           84 SAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVGS  126 (342)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEECC
T ss_pred             CCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECC
Confidence            998643222334556788999999999999887533 4455543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.02  E-value=3.7e-05  Score=72.91  Aligned_cols=175  Identities=14%  Similarity=0.018  Sum_probs=98.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCC---CCeEEEEeCC----CChhhhhCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---GAVVRGFLGQ----PQLENALTGM  113 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~---~~~v~~~~~t----~d~~~al~~a  113 (356)
                      ++|||.|+||+|++|++++..|+..|.  +|+.+|++..  .....++.....   ...+..+.+.    .++.++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            357999999999999999999999887  9999998651  111112211000   0123322111    2345678899


Q ss_pred             cEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEech
Q 018433          114 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  191 (356)
Q Consensus       114 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~  191 (356)
                      |+||.+++.....  ..+....+..|+.....+++.+.+.... .+|++|...-.-.. -...+.+.....+...+|.+.
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~-~~~~~~E~~~~~~~~~Y~~sK  181 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDH-PGLPKVEDTIGKPLSPYAVTK  181 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTC-CCSSBCTTCCCCCCSHHHHHH
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCC-CCCCCCCCCCCCCCChhHHHH
Confidence            9999999864211  0233456778999999999999876433 45555432100000 000000001112233445554


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          192 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       192 ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      ....++-..+++..|++..-++ +.++|...
T Consensus       182 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~  212 (352)
T 1sb8_A          182 YVNELYADVFSRCYGFSTIGLRYFNVFGRRQ  212 (352)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEECceeCcCC
Confidence            4455555566667787766664 56777543

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.02  E-value=2e-05  Score=74.22  Aligned_cols=113  Identities=20%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhCC--CcE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QP---QLENALTG--MDL  115 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~~--aDi  115 (356)
                      |||.|+||+|++|++++..|+..|.  +|+++|++.   ......++...   ..+..+.+ -+   ++.+++++  +|+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~d~   76 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPDS   76 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccC---CceEEEEcCCCCHHHHHHHHhccCCCE
Confidence            6899999999999999999999887  999999753   12122333321   12222211 12   34456777  999


Q ss_pred             EEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          116 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       116 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ||.+|+.....  ..+....+..|+.....+++.+.+....+.||++|.
T Consensus        77 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS  125 (347)
T 1orr_A           77 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST  125 (347)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             EEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc
Confidence            99999864210  013345678899999999999998876556666653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.01  E-value=2.1e-05  Score=78.81  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=71.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--C--------------CCeEEEEeCCCCh
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------GAVVRGFLGQPQL  106 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--~--------------~~~v~~~~~t~d~  106 (356)
                      ..|||+|||+ |.+|..+|..|+..|+  +|+++|+++.  .+..+....  .              ...++.   ++|+
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~--~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---ttd~   78 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQA--KIDILNNGGVPIHEPGLKEVIARNRSAGRLRF---STDI   78 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ECCH
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE---ECCH
Confidence            4699999999 9999999999999988  9999999751  111222210  0              012443   4688


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCC
Q 018433          107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS-NPVN  165 (356)
Q Consensus       107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t-NPv~  165 (356)
                      .+++++||+||++...|.+.+.      .-+...+.++++.|.++. |+.+|++.| -|.+
T Consensus        79 ~~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~g  133 (478)
T 2y0c_A           79 EAAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKSTVPVG  133 (478)
T ss_dssp             HHHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTT
T ss_pred             HHHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCC
Confidence            7889999999999877643221      122334556666666665 455554443 3443

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.99  E-value=2.5e-05  Score=78.72  Aligned_cols=104  Identities=17%  Similarity=0.093  Sum_probs=71.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      +|||.|+||+|++|++++..|+..|.  +|+.++++.....           .+..- ......+++.++|+||.+|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~-----------~v~~d-~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPG-----------KRFWD-PLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTT-----------CEECC-TTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCcc-----------ceeec-ccchhHHhcCCCCEEEECCCCc
Confidence            78999999999999999999999987  9999998762110           01100 0112346789999999999864


Q ss_pred             CC---CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          124 RK---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       124 ~~---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ..   ......++...|+.....+++.+.+...-..+|.+|
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            22   122345667889999999999855444333555554

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.99  E-value=1.8e-05  Score=70.18  Aligned_cols=104  Identities=14%  Similarity=0.115  Sum_probs=70.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  119 (356)
                      +|||.|+||+|++|++++..|+..|.  +|++++++....     ...  ...+..+.+    ..++.++++++|+||.+
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-----~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   74 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKI-----KIE--NEHLKVKKADVSSLDEVCEVCKGADAVISA   74 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGC-----CCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccc-----hhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence            47999999999999999999999886  999999875111     111  022333211    12355788999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +|....    ..+++..|+.....+++.+.+.... .+|.+|
T Consensus        75 a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  111 (227)
T 3dhn_A           75 FNPGWN----NPDIYDETIKVYLTIIDGVKKAGVN-RFLMVG  111 (227)
T ss_dssp             CCC----------CCSHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             CcCCCC----ChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            875421    1124567888999999999887644 455554

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=97.99  E-value=2.4e-05  Score=73.40  Aligned_cols=155  Identities=14%  Similarity=-0.004  Sum_probs=91.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhCC--CcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTG--MDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~~--aDiVI  117 (356)
                      .|+|.|+||+|++|++++..|+..|.  +|+++|++........+........+..+.+ -+   ++.+++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            46999999999999999999999887  9999998762111011221111122333211 12   23345665  59999


Q ss_pred             EcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC------C-ccHHHHHHHHHHhCCCCCCCEEE
Q 018433          118 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------N-STVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       118 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv------~-~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      .+||.....  .......+..|+.....+++.+.+......||++|...      + .++        +....++...+|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~--------e~~~~~~~~~Y~  152 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQT--------EKTPFYPRSPYA  152 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBC--------TTSCCCCCSHHH
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCC--------ccCCCCCCChhH
Confidence            999864211  12345667889999999999988765435666664321      0 000        111233334455


Q ss_pred             echhhHHHHHHHHHHHhCCC
Q 018433          189 VTMLDVVRANTFVAEVLGLD  208 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~  208 (356)
                      .+.....++-..+++.++++
T Consensus       153 ~sK~~~e~~~~~~~~~~~~~  172 (345)
T 2z1m_A          153 VAKLFGHWITVNYREAYNMF  172 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHhCCc
Confidence            55444455555666666654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.98  E-value=4.3e-05  Score=67.08  Aligned_cols=100  Identities=12%  Similarity=0.114  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC---CCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~~al~~aDiVIi~ag  121 (356)
                      |||.|+||+|++|++++..|+..|.  +|++++++....  .++..     .+..+..   ..+- +++.++|+||.++|
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~--~~~~~-----~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   70 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKI--TQTHK-----DINILQKDIFDLTL-SDLSDQNVVVDAYG   70 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHH--HHHCS-----SSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhh--hhccC-----CCeEEeccccChhh-hhhcCCCEEEECCc
Confidence            7999999999999999999999987  999999976221  12221     1122111   1122 68899999999998


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      .+...       ...|+...+.+++.+++.. ...++++|.
T Consensus        71 ~~~~~-------~~~~~~~~~~l~~a~~~~~-~~~~v~~SS  103 (221)
T 3ew7_A           71 ISPDE-------AEKHVTSLDHLISVLNGTV-SPRLLVVGG  103 (221)
T ss_dssp             SSTTT-------TTSHHHHHHHHHHHHCSCC-SSEEEEECC
T ss_pred             CCccc-------cchHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            75321       2347778888888887653 345666654

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=97.98  E-value=2e-05  Score=74.84  Aligned_cols=174  Identities=16%  Similarity=0.097  Sum_probs=96.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-C---ChhhhhC--CCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALT--GMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~al~--~aDiVI  117 (356)
                      |||.|+||+|++|++++..|+.. +.  +|+++|++...+....+.+......+..+.+. +   ++.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            68999999999999999999886 56  89999975410000111111111233332211 2   2344566  899999


Q ss_pred             EcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHh--CCC------cEEEEecCCC-CccHHHHHH--------HHHHh
Q 018433          118 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC--CPN------ATVNLISNPV-NSTVPIAAE--------VFKKA  178 (356)
Q Consensus       118 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~--~p~------a~viv~tNPv-~~~t~~~~~--------~~~~~  178 (356)
                      .+||.....  .....+.+..|+.....+++.+.+.  .-+      +.||++|.-. .....--..        .+.+.
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~  158 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET  158 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC
Confidence            999864210  0123456788999999999998887  433      3666665311 000000000        00011


Q ss_pred             CCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          179 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       179 ~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      ...++...+|.+.....++-..+++.+|++..-++ +.++|..
T Consensus       159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~  201 (361)
T 1kew_A          159 TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPY  201 (361)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCC
Confidence            12233344555555555566666677777655554 4566654

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=97.97  E-value=2.8e-05  Score=73.15  Aligned_cols=167  Identities=17%  Similarity=0.154  Sum_probs=95.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCC---cEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-C---ChhhhhCCCcEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN-PLV---SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALTGMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~-~~~---~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~al~~aDiV  116 (356)
                      |||.|+||+|++|++++..|+.. +..   .+|+++|++...+....+........+..+.+. +   ++.+++.++|+|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   80 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence            68999999999999999999885 222   399999985411100111111111223332211 2   344667899999


Q ss_pred             EEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-C------CccHHHHHHHHHHhCCCCCCCEE
Q 018433          117 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-V------NSTVPIAAEVFKKAGTYDPKKLL  187 (356)
Q Consensus       117 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-v------~~~t~~~~~~~~~~~~~~~~kvi  187 (356)
                      |.+++.....  ..+..+.+..|+.....+++.+.+... ..||++|.. +      ..++        +....++...+
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~-~~~v~~SS~~vyg~~~~~~~~--------E~~~~~~~~~Y  151 (337)
T 1r6d_A           81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGV-GRVVHVSTNQVYGSIDSGSWT--------ESSPLEPNSPY  151 (337)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTC-CEEEEEEEGGGGCCCSSSCBC--------TTSCCCCCSHH
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecchHHhCCCCCCCCC--------CCCCCCCCCch
Confidence            9999854210  012245678899999999999988653 355555421 1      0110        11122333444


Q ss_pred             EechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          188 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       188 G~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      |.+.....++-..+++..|++..-++ +.++|..
T Consensus       152 ~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~  185 (337)
T 1r6d_A          152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCC
Confidence            55544445555556666777655554 4566754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.96  E-value=2.8e-05  Score=68.65  Aligned_cols=101  Identities=18%  Similarity=0.142  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC---CCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---t~d~~~al~~aDiVIi~ag  121 (356)
                      |||.|+||+|++|++++..|+..|.  +|++++++...  ..++...    .+..+..   ..+- +++.++|+||.++|
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~--~~~~~~~----~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   71 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQK--AADRLGA----TVATLVKEPLVLTE-ADLDSVDAVVDALS   71 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHTCT----TSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccc--cccccCC----CceEEecccccccH-hhcccCCEEEECCc
Confidence            7999999999999999999999987  99999987521  1122211    1222111   1122 67899999999998


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ....+..     ...|+...+.+++.+++..  ..++++|
T Consensus        72 ~~~~~~~-----~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           72 VPWGSGR-----GYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CCTTSSC-----THHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             cCCCcch-----hhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            7522222     2568888888888888765  5666664

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=97.96  E-value=3.5e-05  Score=70.51  Aligned_cols=153  Identities=16%  Similarity=0.137  Sum_probs=93.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~a  120 (356)
                      ++|.|+||+|++|++++..|+..+.  +|++.|+++....         ...+..+..    ..++.+++++.|+||..|
T Consensus         4 k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~A   72 (267)
T 3rft_A            4 KRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVAGCDGIVHLG   72 (267)
T ss_dssp             EEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHcCCCEEEECC
Confidence            4799999999999999999998886  8999998762111         111222111    123456788999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC-CCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHH
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANT  199 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN-Pv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~  199 (356)
                      |...  .....+.+..|+.....+.+.+.+... ..||++|. -+.....- ...+.+....++...+|.+......+-+
T Consensus        73 g~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iv~~SS~~~~g~~~~-~~~~~e~~~~~~~~~Y~~sK~~~e~~~~  148 (267)
T 3rft_A           73 GISV--EKPFEQILQGNIIGLYNLYEAARAHGQ-PRIVFASSNHTIGYYPQ-TERLGPDVPARPDGLYGVSKCFGENLAR  148 (267)
T ss_dssp             SCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEEEEGGGGTTSBT-TSCBCTTSCCCCCSHHHHHHHHHHHHHH
T ss_pred             CCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEcchHHhCCCCC-CCCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence            8742  233456778999999999999987654 45555542 11100000 0000011123344455555555556666


Q ss_pred             HHHHHhCCCCCCC
Q 018433          200 FVAEVLGLDPRDV  212 (356)
Q Consensus       200 ~la~~l~v~~~~v  212 (356)
                      .+++.+|++...+
T Consensus       149 ~~a~~~g~~~~~v  161 (267)
T 3rft_A          149 MYFDKFGQETALV  161 (267)
T ss_dssp             HHHHHHCCCEEEE
T ss_pred             HHHHHhCCeEEEE
Confidence            7777777654333

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=97.94  E-value=2.6e-05  Score=73.65  Aligned_cols=163  Identities=14%  Similarity=0.049  Sum_probs=96.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEeCC----CChhhhhCCCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiV  116 (356)
                      +|+|.|+||+|++|++++..|+..+...+|+++|++..   .....++.+    ..+..+.+.    .++.++++++|+|
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~d~v   79 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG----DRVELVVGDIADAELVDKLAAKADAI   79 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCS----SSEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhcc----CCeEEEECCCCCHHHHHHHhhcCCEE
Confidence            46999999999999999999988732239999998641   111111211    233332211    2345678999999


Q ss_pred             EEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-------------------CccHHHHHHHH
Q 018433          117 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-------------------NSTVPIAAEVF  175 (356)
Q Consensus       117 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv-------------------~~~t~~~~~~~  175 (356)
                      |.+||.....  ..+..+.+..|+.....+++.+.+...  .||++|.-.                   ..+        
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~--------  149 (348)
T 1oc2_A           80 VHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKF--------  149 (348)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSB--------
T ss_pred             EECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCc--------
Confidence            9999864210  012245678899999999999988753  666654211                   011        


Q ss_pred             HHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          176 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       176 ~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      .+....++...+|.+.....++-..+++.+|++..-++ +.++|..
T Consensus       150 ~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~  195 (348)
T 1oc2_A          150 TAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPY  195 (348)
T ss_dssp             CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTT
T ss_pred             CCCCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCC
Confidence            01112333344555544555555566666676654443 4566654

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=97.94  E-value=2e-05  Score=73.41  Aligned_cols=165  Identities=14%  Similarity=0.132  Sum_probs=94.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe---CCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL---GQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~---~t~d~~~al~~aDiVIi~ag  121 (356)
                      +||.|+||+|++|++++..|+..|.  .+++.+.+.....   ...    ..+..+.   ...++.++++++|+||.+++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~--~v~~~~~~~~~~~---~~~----~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~   72 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNE--IVVIDNLSSGNEE---FVN----EAARLVKADLAADDIKDYLKGAEEVWHIAA   72 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSC--EEEECCCSSCCGG---GSC----TTEEEECCCTTTSCCHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEcCCCCChh---hcC----CCcEEEECcCChHHHHHHhcCCCEEEECCC
Confidence            5899999999999999999998872  4444333321100   001    1111111   01345678899999999998


Q ss_pred             CCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-CccHHHHHHHHHHhCCCCCCCEEEechhhHHHHH
Q 018433          122 VPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  198 (356)
Q Consensus       122 ~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv-~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~  198 (356)
                      .+..  ........+..|+.....+++.+.+.... .+|++|.-. .....  ...+.+....++...+|.+.....++-
T Consensus        73 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~vyg~~~--~~~~~E~~~~~~~~~Y~~sK~~~e~~~  149 (313)
T 3ehe_A           73 NPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTSTVYGEAK--VIPTPEDYPTHPISLYGASKLACEALI  149 (313)
T ss_dssp             CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchHHhCcCC--CCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            6532  22345667789999999999999887644 555554311 00000  000000112233344555555555666


Q ss_pred             HHHHHHhCCCCCCCc-ccEEeccc
Q 018433          199 TFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       199 ~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      ..+++.+|++..-++ ..++|...
T Consensus       150 ~~~~~~~g~~~~ilRp~~v~G~~~  173 (313)
T 3ehe_A          150 ESYCHTFDMQAWIYRFANVIGRRS  173 (313)
T ss_dssp             HHHHHHTTCEEEEEECSCEESTTC
T ss_pred             HHHHHhcCCCEEEEeeccccCcCC
Confidence            667777777655553 55677543

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.92  E-value=2.4e-05  Score=68.99  Aligned_cols=99  Identities=17%  Similarity=0.215  Sum_probs=62.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      |||+||||+|.+|+.++..|...+.  +++++|+++  ......++........+..    +++.++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            6999999559999999999998887  899999875  1111111110000012331    3567889999999998631


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      .            .    +.++.+.+....++.+++..+|+.+
T Consensus        75 ~------------~----~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 E------------H----AIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             H------------H----HHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             h------------h----HHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            1            0    2233333433335778888899776

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.91  E-value=2.1e-05  Score=75.05  Aligned_cols=116  Identities=16%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCc-hh-HHH------HHhcCCCCCeEEEEeC-CC---Chh
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNT-PG-VTA------DISHMDTGAVVRGFLG-QP---QLE  107 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~--~~~~~el~L~D~~~~-~g-~~~------dl~~~~~~~~v~~~~~-t~---d~~  107 (356)
                      .++|+|.|+||+|++|++++..|+.  .|.  +|+++|++.. .. ...      +..... ...+..+.+ -+   ++.
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~   84 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLI-GFKGEVIAADINNPLDLR   84 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGT-TCCSEEEECCTTCHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhcc-ccCceEEECCCCCHHHHH
Confidence            3467999999999999999999998  777  9999998541 00 000      000000 112222211 12   233


Q ss_pred             hh-hCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          108 NA-LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       108 ~a-l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ++ ..++|+||.+||..........+.+..|+.....+++.+++....  ||++|.
T Consensus        85 ~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~SS  138 (362)
T 3sxp_A           85 RLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYASS  138 (362)
T ss_dssp             HHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEEE
T ss_pred             HhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeCc
Confidence            44 689999999998654333456677889999999999999877544  555543

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.90  E-value=2.2e-05  Score=75.02  Aligned_cols=111  Identities=16%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-----CChhhhhCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~al~~aDiV  116 (356)
                      .+|||.|+||+|++|++++..|+.. +.  +|+.+|++....  .++...   ..++.+.+.     ..+.++++++|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~~---~~v~~~~~Dl~~d~~~~~~~~~~~d~V   95 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVKH---ERMHFFEGDITINKEWVEYHVKKCDVI   95 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGGS---TTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhccC---CCeEEEeCccCCCHHHHHHHhccCCEE
Confidence            4579999999999999999999887 77  999999876111  111111   223332211     1244577899999


Q ss_pred             EEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          117 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       117 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      |.+|+......  .+..+.+..|+.....+++.+.+.+  ..+|.+|.
T Consensus        96 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           96 LPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             EECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            99988643111  2334566788888899999999887  56666654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.90  E-value=2.6e-05  Score=71.18  Aligned_cols=94  Identities=16%  Similarity=0.251  Sum_probs=67.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~--~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      |++.|||+|||+ |.+|+.++..|...+..  .+|.++|+++..       .   .  +..   +++..++++++|+||+
T Consensus         1 ~m~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~---g--~~~---~~~~~~~~~~~D~vi~   64 (262)
T 2rcy_A            1 GMENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------T---T--LNY---MSSNEELARHCDIIVC   64 (262)
T ss_dssp             CCSSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------S---S--SEE---CSCHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------C---c--eEE---eCCHHHHHhcCCEEEE
Confidence            345689999999 99999999999877731  389999987632       1   1  222   2466788899999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  166 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~  166 (356)
                      +.. +   ..            +.++.+.+..+.++..++..+|.++.
T Consensus        65 ~v~-~---~~------------~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           65 AVK-P---DI------------AGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             CSC-T---TT------------HHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             EeC-H---HH------------HHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            853 1   11            34555566666677788888888775

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=97.89  E-value=3.2e-05  Score=73.40  Aligned_cols=114  Identities=17%  Similarity=0.146  Sum_probs=74.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhCC--CcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENALTG--MDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~~--aDi  115 (356)
                      .|+|.|+||+|++|++++..|+..|.  +|+++|++.  .......+..   ...+..+.+ -+   ++.+++++  .|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCCCE
Confidence            46999999999999999999999887  999999876  2222211211   112222211 12   23445665  899


Q ss_pred             EEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          116 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       116 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ||.+||.+...  .....+.+..|+.....+++.+.+......||++|.
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  132 (357)
T 1rkx_A           84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS  132 (357)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred             EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            99999864211  122345678899999999999988753456666654

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=97.89  E-value=4.8e-05  Score=72.28  Aligned_cols=111  Identities=10%  Similarity=0.087  Sum_probs=73.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC-----CCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-----GMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-----~aDiVI  117 (356)
                      .|+|.|+||+|++|++++..|+..| .  +|+++|.+........+.......++.   ....++++++     ++|+||
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~Vi  120 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIF  120 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceEeeecC---cHHHHHHHHhhcccCCCCEEE
Confidence            4789999999999999999999887 5  889999865211111121111111121   1123445555     599999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .+|+..........+.+..|+.....+++.+.+...  .+|++|
T Consensus       121 h~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~S  162 (357)
T 2x6t_A          121 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  162 (357)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             ECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            999865433345566788999999999999988765  555554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.88  E-value=2.9e-05  Score=68.62  Aligned_cols=101  Identities=19%  Similarity=0.237  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-----CCChhhhhCCCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-----QPQLENALTGMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-----t~d~~~al~~aDiVIi~  119 (356)
                      |||.|+||+|++|+.++..|+..|.  +|++++++...     +...   ..+..+.+     ..++.++++++|+||.+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~-----~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQ-----VPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGG-----SCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccc-----hhhc---CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            6999999999999999999998886  99999987511     0110   12222211     12356678999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      +|.....      .+..|+.....+++.+++.... .+|++|.
T Consensus        71 ag~~~~~------~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           71 SGSGGKS------LLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             CCCTTSS------CCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CcCCCCC------cEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            9865421      2345666677778887765433 5565554

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=97.88  E-value=7.2e-05  Score=69.26  Aligned_cols=99  Identities=17%  Similarity=0.175  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||.|+||+|++|++++..|...|+  +|+.+.+++..            ..+..  ...+ .++++++|.||.+++.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~------------~~~~~--~~~~-~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGP------------GRITW--DELA-ASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCT------------TEEEH--HHHH-HHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCc------------Ceeec--chhh-HhhccCCCEEEEeccCcc
Confidence            8999999999999999999999998  89988875411            11111  0112 367899999999987532


Q ss_pred             C-----CCC-cHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEe
Q 018433          125 K-----PGM-TRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI  160 (356)
Q Consensus       125 ~-----~g~-~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~  160 (356)
                      .     ... ...+....|+...+.+.+.+.+... ..+++..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~  106 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV  106 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence            1     111 2345667888889999988887653 3344443

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.88  E-value=6e-05  Score=70.88  Aligned_cols=165  Identities=15%  Similarity=0.078  Sum_probs=95.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCChhhhhC--CCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLENALT--GMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~--~aDi  115 (356)
                      .|+|.|+||+|++|++++..|+..|.  +|+++|++.  ......++.... ...+..+..    ..++.++++  ++|+
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   81 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPITA   81 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCcE
Confidence            46999999999999999999999987  999999876  222222222111 112222111    123445566  8999


Q ss_pred             EEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC------CCC-ccHHHHHHHHHHhCCCCCCCE
Q 018433          116 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN------PVN-STVPIAAEVFKKAGTYDPKKL  186 (356)
Q Consensus       116 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN------Pv~-~~t~~~~~~~~~~~~~~~~kv  186 (356)
                      ||.+||.....  .....+.+..|+.....+++.+++.... .||++|.      |.+ .+        .+....++...
T Consensus        82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~--------~e~~~~~~~~~  152 (341)
T 3enk_A           82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSSSATVYGVPERSPI--------DETFPLSATNP  152 (341)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGBCSCSSSSB--------CTTSCCBCSSH
T ss_pred             EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEecceEecCCCCCCC--------CCCCCCCCCCh
Confidence            99999864211  1123456788999999999999886544 4555442      111 01        01111223344


Q ss_pred             EEechhhHHHHHHHHHHHhC-CCCCCCc-ccEEecc
Q 018433          187 LGVTMLDVVRANTFVAEVLG-LDPRDVD-VPVVGGH  220 (356)
Q Consensus       187 iG~t~ld~~R~~~~la~~l~-v~~~~v~-~~viG~h  220 (356)
                      +|.+.....++-..+++.++ ++..-++ ..++|.+
T Consensus       153 Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~  188 (341)
T 3enk_A          153 YGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAH  188 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred             hHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCc
Confidence            55554444555555666654 4433333 4566654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=97.85  E-value=2.2e-05  Score=82.48  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch-hH--HHH----HhcCCC---------CCeEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP-GV--TAD----ISHMDT---------GAVVRGFLGQP  104 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~-g~--~~d----l~~~~~---------~~~v~~~~~t~  104 (356)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|+++  +. +.  ..+    +.....         ...++.   ++
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  386 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL  386 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---EC
Confidence            4578999999 9999999999999998  999999986  11 11  011    111110         012443   35


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433          105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  166 (356)
Q Consensus       105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~  166 (356)
                      |+ +++++||+||++.              ..+..+.+++...+.+++ |++++  +||...+
T Consensus       387 d~-~~~~~aDlVIeaV--------------~e~~~vk~~v~~~l~~~~~~~~Il--asntStl  432 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAIL--ASNTSTI  432 (715)
T ss_dssp             SS-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSS
T ss_pred             CH-HHHCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCeEE--EeCCCCC
Confidence            66 7899999999985              233455667777788887 46643  6666544

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.84  E-value=7.7e-05  Score=69.32  Aligned_cols=98  Identities=11%  Similarity=0.159  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      +.|||+|||+ |.+|.+++..|...++ ..+|+++|+++..  ..++.+..   .+..   ++|..+++++||+||++. 
T Consensus         2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~--~~~l~~~~---gi~~---~~~~~~~~~~aDvVilav-   71 (280)
T 3tri_A            2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDK--LDFFKEKC---GVHT---TQDNRQGALNADVVVLAV-   71 (280)
T ss_dssp             CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHH--HHHHHHTT---CCEE---ESCHHHHHSSCSEEEECS-
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHH--HHHHHHHc---CCEE---eCChHHHHhcCCeEEEEe-
Confidence            3579999999 9999999999998874 5589999998621  12222211   1222   245678899999999986 


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecCCCC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPVN  165 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tNPv~  165 (356)
                       |  +.            .+.++.+.+..+  .++.+|+.+++.+.
T Consensus        72 -~--p~------------~~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           72 -K--PH------------QIKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             -C--GG------------GHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             -C--HH------------HHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence             1  11            134555556554  35667776666665

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.84  E-value=9.3e-05  Score=68.04  Aligned_cols=118  Identities=18%  Similarity=0.202  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++........+..+.. -+|.   ++++       
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999999887  899999875  2222333433221123333211 1232   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCC-CcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCP-NATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p-~a~viv~tNP  163 (356)
                      .+.|+||..+|......   .+   ....+..|+..    .+.+.+.+++... .+.||++|..
T Consensus       110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~  173 (279)
T 1xg5_A          110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM  173 (279)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcCh
Confidence            27999999998643211   12   23455667766    6777777776653 4677777643

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.83  E-value=7.1e-05  Score=70.75  Aligned_cols=121  Identities=14%  Similarity=0.130  Sum_probs=72.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHH---HhcCCCCCeEEE--EeCCCChhhhhCCCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD---ISHMDTGAVVRG--FLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~d---l~~~~~~~~v~~--~~~t~d~~~al~~aDiVIi~  119 (356)
                      |||+|||+ |.+|..++..|...+.  +|.++|+++.......   +.... ....+.  ...++|.+++.+++|+||++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~~~i~~~Gl~~~~~~-~g~~~~~~~~~~~~~~~~~~~~DlVila   78 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDYETVKAKGIRIRSAT-LGDYTFRPAAVVRSAAELETKPDCTLLC   78 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTHHHHHHHCEEEEETT-TCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChHHHHHhCCcEEeecC-CCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence            79999999 9999999999999887  9999998762111110   11101 112211  11124555555599999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chh
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML  192 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~l  192 (356)
                      .-..    .            +.++++.+..+- |+..|+.+.|-.+..-.     +.+.  +|..+|++- +..
T Consensus        79 vK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~-----l~~~--~~~~~vl~g~~~~  130 (320)
T 3i83_A           79 IKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEPE-----VAAA--FPDNEVISGLAFI  130 (320)
T ss_dssp             CCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSHH-----HHHH--STTSCEEEEEEEE
T ss_pred             cCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHHH-----HHHH--CCCCcEEEEEEEe
Confidence            5221    1            113344454443 67888888998876532     2333  556677654 443

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=97.83  E-value=9.7e-05  Score=68.25  Aligned_cols=109  Identities=10%  Similarity=0.098  Sum_probs=73.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC-----CcEEEEc
Q 018433           46 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG-----MDLVIIP  119 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~-----aDiVIi~  119 (356)
                      ||.|+||+|++|++++..|+..| .  +|+++|+........++.......++.   ....+.+++++     +|+||.+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccccc---cHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999887 5  889999865211111222221111222   11234456664     9999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ++.......+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  115 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            9865433344566778999999999999988765  555554

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.82  E-value=7.6e-05  Score=71.16  Aligned_cols=103  Identities=19%  Similarity=0.248  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCc-----hhHHHHHhcCC--C------CCeEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT-----PGVTADISHMD--T------GAVVRGFLGQP  104 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~~-----~g~~~dl~~~~--~------~~~v~~~~~t~  104 (356)
                      .+|||+|||+ |.+|+.++..|+..+.     ..+|.++|+++.     ....+.-.+..  .      ...+..   ++
T Consensus         7 ~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~   82 (354)
T 1x0v_A            7 ASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA---VP   82 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE---ES
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE---Ec
Confidence            3479999999 9999999999988761     038999999763     33322211110  0      112333   35


Q ss_pred             ChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 018433          105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  165 (356)
Q Consensus       105 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~  165 (356)
                      |+.+++++||+||++.-.     .           .+.++.+.+..+. |+.+|+.++|-..
T Consensus        83 ~~~~~~~~aD~Vilav~~-----~-----------~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           83 DVVQAAEDADILIFVVPH-----Q-----------FIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             SHHHHHTTCSEEEECCCG-----G-----------GHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             CHHHHHcCCCEEEEeCCH-----H-----------HHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            677889999999998521     1           2455666676655 5788888888554

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=97.81  E-value=0.00013  Score=68.74  Aligned_cols=110  Identities=14%  Similarity=0.039  Sum_probs=73.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++||.|+||+|++|++++..|+..|.  +|+++|++.  ....   +.+......+..+... -...++.++|+||.+|+
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~D-~~~~~~~~~d~vih~A~  100 (343)
T 2b69_A           27 RKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKRN---VEHWIGHENFELINHD-VVEPLYIEVDQIYHLAS  100 (343)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGG---TGGGTTCTTEEEEECC-TTSCCCCCCSEEEECCS
T ss_pred             CCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccchhh---hhhhccCCceEEEeCc-cCChhhcCCCEEEECcc
Confidence            46999999999999999999998887  999999864  1111   1111111234433221 11245789999999988


Q ss_pred             CCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          122 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       122 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .....  ..+....+..|+.....+++.+.+...  .+|++|
T Consensus       101 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A          101 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             CCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            54211  123445678899999999999988753  566654

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=97.80  E-value=3e-05  Score=72.35  Aligned_cols=168  Identities=13%  Similarity=0.101  Sum_probs=94.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-C---CChhhhhCC--Cc
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALTG--MD  114 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t---~d~~~al~~--aD  114 (356)
                      +.+.++|.|+||+|++|++++..|+..|.  +|+++|++.....   +       .+..+.. -   .++.+++++  .|
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~---l-------~~~~~~~Dl~d~~~~~~~~~~~~~d   76 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEAKL---P-------NVEMISLDIMDSQRVKKVISDIKPD   76 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTCCC---T-------TEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccc---c-------eeeEEECCCCCHHHHHHHHHhcCCC
Confidence            45678999999999999999999999887  9999998752111   1       1222111 1   223455665  89


Q ss_pred             EEEEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHH-HHHHHHHhCCCCCCCEEEech
Q 018433          115 LVIIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI-AAEVFKKAGTYDPKKLLGVTM  191 (356)
Q Consensus       115 iVIi~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~-~~~~~~~~~~~~~~kviG~t~  191 (356)
                      +||.+||....  ...+..+.+..|+.....+++.+.+......||++|...-.-... -...+.+....++...+|.+.
T Consensus        77 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK  156 (321)
T 2pk3_A           77 YIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSK  156 (321)
T ss_dssp             EEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHH
T ss_pred             EEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHH
Confidence            99999986421  112345677889999999999997664445666665321000000 000000111122333444444


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          192 LDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       192 ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      ....++-..+++..|++..-++ +.++|..
T Consensus       157 ~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~  186 (321)
T 2pk3_A          157 ASVGMLARQYVKAYGMDIIHTRTFNHIGPG  186 (321)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEeCcccCcC
Confidence            4444555555566666554443 3566654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=97.80  E-value=0.00011  Score=68.98  Aligned_cols=115  Identities=17%  Similarity=0.091  Sum_probs=75.1

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhC--C
Q 018433           39 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALT--G  112 (356)
Q Consensus        39 ~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~--~  112 (356)
                      +...+.|+|.|+||+|++|++++..|+..|.  +|+++|++.....  ++....  ..+..+.+ -+   ++.++++  +
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~~   88 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAFDSFK   88 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHHhhcC
Confidence            3344567999999999999999999998886  9999998641100  011110  12322211 12   2445677  9


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +|+||.+||..........+ +..|+.....+++.+.+... ..||++|
T Consensus        89 ~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~-~~iV~~S  135 (330)
T 2pzm_A           89 PTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGV-KRLLNFQ  135 (330)
T ss_dssp             CSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTC-SEEEEEE
T ss_pred             CCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCC-CEEEEec
Confidence            99999999865322222333 68899999999999987653 3555554

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.78  E-value=6.6e-05  Score=66.64  Aligned_cols=76  Identities=25%  Similarity=0.355  Sum_probs=55.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      .|||+|||+ |.+|+.++..|...+.  +|.++|+++.                           ++++||+||++.. +
T Consensus        19 ~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~-~   67 (209)
T 2raf_A           19 GMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP-Y   67 (209)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC-H
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC-c
Confidence            469999998 9999999999998887  9999998642                           4679999999852 1


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                                     ..+.++++.+..+.++.+++.++|+.+
T Consensus        68 ---------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           68 ---------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             ---------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence                           112334444443334778888899765

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.77  E-value=0.00012  Score=68.61  Aligned_cols=109  Identities=15%  Similarity=0.088  Sum_probs=72.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-C----ChhhhhCCCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P----QLENALTGMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~----d~~~al~~aDiVIi  118 (356)
                      |||.|+||+|++|++++..|+.. +.  +|+++|++.....  ++..   ...+..+.+. +    .+.++++++|+||.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~--~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAIS--RFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGGG--GGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchHH--Hhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            68999999999999999999987 66  8999998752111  1111   1223322111 1    24457789999999


Q ss_pred             cCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          119 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       119 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      +||.....  ..+..+.+..|+.....+++.+.+..  ..+|.+|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS  117 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  117 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            98864211  11334566788888889998888765  56666654

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.77  E-value=2.9e-05  Score=71.48  Aligned_cols=99  Identities=21%  Similarity=0.188  Sum_probs=71.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~  119 (356)
                      .+++||.|+||+|++|++++..|+..|.  +|+.+|++.     .|+.+            ..++.++++  ++|+||.+
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d------------~~~~~~~~~~~~~d~vih~   70 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITN------------VLAVNKFFNEKKPNVVINC   70 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTC------------HHHHHHHHHHHCCSEEEEC
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCC------------HHHHHHHHHhcCCCEEEEC
Confidence            4578999999999999999999998886  899998752     12211            123445666  79999999


Q ss_pred             CCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          120 AGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       120 ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +|.....  ..+..+.+..|+.....+++.+.+...  .+|++|
T Consensus        71 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           71 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            9864210  123456678899999999999988754  666654

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=97.76  E-value=6.9e-05  Score=72.05  Aligned_cols=169  Identities=15%  Similarity=0.067  Sum_probs=96.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-C---CChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t---~d~~~al~~aDiVIi  118 (356)
                      ++|||.|+||+|++|++++..|+..+.  +|+++|++......  +..    ..+..+.. -   .++.++++++|+||.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~----~~v~~~~~Dl~d~~~~~~~~~~~d~Vih   99 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMT--EDM----FCDEFHLVDLRVMENCLKVTEGVDHVFN   99 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSC--GGG----TCSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchh--hcc----CCceEEECCCCCHHHHHHHhCCCCEEEE
Confidence            357999999999999999999999886  99999987521110  111    11121111 1   234567899999999


Q ss_pred             cCCCCCCC---CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-CccHHHH---HHHHHHhC--CCCCCCEEEe
Q 018433          119 PAGVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NSTVPIA---AEVFKKAG--TYDPKKLLGV  189 (356)
Q Consensus       119 ~ag~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv-~~~t~~~---~~~~~~~~--~~~~~kviG~  189 (356)
                      +++.....   .....+.+..|+.....+++.+.+.... .||++|... .....-.   ...+.+..  ..++...+|.
T Consensus       100 ~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~  178 (379)
T 2c5a_A          100 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGL  178 (379)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHH
T ss_pred             CceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChhHH
Confidence            99864321   2345567788999999999999876543 455554321 0000000   00000000  1122334444


Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      +.....++-..+++..|++..-++ +.++|..
T Consensus       179 sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~  210 (379)
T 2c5a_A          179 EKLATEELCKHYNKDFGIECRIGRFHNIYGPF  210 (379)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCceeCcC
Confidence            444444555555666676655554 5677754

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.76  E-value=4.2e-05  Score=70.99  Aligned_cols=65  Identities=8%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +|||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+.+..    +..   ++++++++++||+||++.
T Consensus         1 s~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            1 SQKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKAE--ELAALG----AER---AATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHhcCCEEEEEc
Confidence            379999999 9999999999999887  9999999862211  122211    222   357788999999999985

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.76  E-value=0.00037  Score=60.12  Aligned_cols=103  Identities=15%  Similarity=0.155  Sum_probs=68.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-C---CChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t---~d~~~al~~aDiVIi~a  120 (356)
                      |||.|+||+|++|++++..|+..+.  +|++++++...     +.... ...+..+.. -   .++.++++++|+||.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~-----~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhh-----ccccc-CCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            7999999999999999999999886  99999987511     01110 112222211 1   23456789999999998


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |.......     ...|......+++.+.+.... .++++|
T Consensus        76 ~~~~~~~~-----~~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           76 GTRNDLSP-----TTVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCTTCCSC-----CCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             cCCCCCCc-----cchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            86432111     135777788888888876543 455554

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.75  E-value=5e-05  Score=72.39  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCC-C---ChhhhhCCCc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ-P---QLENALTGMD  114 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t-~---d~~~al~~aD  114 (356)
                      .+.++|.|+||+|++|++++..|+.. |. .+|+++|+++.  .....++..    ..+..+.+. .   ++.++++++|
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D   93 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVD   93 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCC
Confidence            44579999999999999999999887 63 38999998752  222222321    223332211 2   3446788999


Q ss_pred             EEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          115 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       115 iVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +||.+|+....+.  ....+.+..|+.....+++.+.+.... .||++|
T Consensus        94 ~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~S  141 (344)
T 2gn4_A           94 ICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALS  141 (344)
T ss_dssp             EEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Confidence            9999998653211  223567789999999999999887533 455554

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.75  E-value=0.00015  Score=65.82  Aligned_cols=100  Identities=16%  Similarity=0.174  Sum_probs=63.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h--H--------HHHHhcCCCCCeEEEEeCCCChhhh
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--V--------TADISHMDTGAVVRGFLGQPQLENA  109 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g--~--------~~dl~~~~~~~~v~~~~~t~d~~~a  109 (356)
                      ...+||+|||+ |.+|.+++..|+..+.  +|+++|+++..  .  .        ..++....  .....    ++..++
T Consensus        17 ~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~e~   87 (245)
T 3dtt_A           17 FQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH--PHVHL----AAFADV   87 (245)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS--TTCEE----EEHHHH
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc--Cceec----cCHHHH
Confidence            34679999999 9999999999999887  99999987522  0  0        22232211  11221    345788


Q ss_pred             hCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          110 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      +++||+||++.-..    .        -.+.+.++.   ...-++.+||.++||.+
T Consensus        88 ~~~aDvVilavp~~----~--------~~~~~~~i~---~~~l~g~ivi~~s~~~~  128 (245)
T 3dtt_A           88 AAGAELVVNATEGA----S--------SIAALTAAG---AENLAGKILVDIANPLD  128 (245)
T ss_dssp             HHHCSEEEECSCGG----G--------HHHHHHHHC---HHHHTTSEEEECCCCEE
T ss_pred             HhcCCEEEEccCcH----H--------HHHHHHHhh---hhhcCCCEEEECCCCCC
Confidence            99999999985211    1        112233331   22227889999999873

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.74  E-value=0.00016  Score=71.79  Aligned_cols=111  Identities=16%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC---C-------------CCeEEEEeCCCChh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---T-------------GAVVRGFLGQPQLE  107 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~---~-------------~~~v~~~~~t~d~~  107 (356)
                      ..+|+|||+ |.+|..+|..|+..|+  +|+++|+++.+  +..+....   .             ...++.   ++|+.
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~k--v~~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd~~   79 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARK--IELLHQNVMPIYEPGLDALVASNVKAGRLSF---TTDLA   79 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTT--HHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHhcCCCCccCCCHHHHHHhhcccCCEEE---ECCHH
Confidence            569999999 9999999999999998  99999998722  11222211   0             123443   46888


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec-CCCCcc
Q 018433          108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS-NPVNST  167 (356)
Q Consensus       108 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t-NPv~~~  167 (356)
                      +++++||+||++.+.|...+..     .-++..+++.++.|.++. |+.+|+..| -|.+..
T Consensus        80 ea~~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt  136 (446)
T 4a7p_A           80 EGVKDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTG  136 (446)
T ss_dssp             HHHTTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHH
T ss_pred             HHHhcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHH
Confidence            8999999999998777542110     112233455556666655 455555543 555543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.74  E-value=0.00015  Score=67.42  Aligned_cols=101  Identities=18%  Similarity=0.243  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC----CC-----eEEEEeCCCChhhhhCCCc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----GA-----VVRGFLGQPQLENALTGMD  114 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~----~~-----~v~~~~~t~d~~~al~~aD  114 (356)
                      +|||+|||+ |.+|+.++..|...+.  +|.++|+++..  ...+.+...    ..     .+... ...+..++++++|
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d   76 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAH--IEAIRKNGLIADFNGEEVVANLPIF-SPEEIDHQNEQVD   76 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHHCEEEEETTEEEEECCCEE-CGGGCCTTSCCCS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhCCEEEEeCCCeeEecceee-cchhhcccCCCCC
Confidence            479999999 9999999999998887  99999987511  111211100    00     01111 0112223345999


Q ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433          115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  166 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~  166 (356)
                      +||++...                ..+.++.+.+..+. |+..|+.++|..+.
T Consensus        77 ~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~  113 (316)
T 2ew2_A           77 LIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGH  113 (316)
T ss_dssp             EEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred             EEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence            99998521                11356666777665 67888888887764

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=97.74  E-value=6.2e-05  Score=72.48  Aligned_cols=119  Identities=13%  Similarity=0.112  Sum_probs=73.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh------------------HHHHHhcCCCCCeEEEEeC
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------------------VTADISHMDTGAVVRGFLG  102 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g------------------~~~dl~~~~~~~~v~~~~~  102 (356)
                      +.+.++|.|+||+|++|++++..|+..|.  +|+++|......                  ...++.... ...+..+.+
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~   84 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVG   84 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEES
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEEC
Confidence            45678999999999999999999999887  999999753110                  111111100 112222211


Q ss_pred             C-CC---hhhhhCC--CcEEEEcCCCCCCC--CCcH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          103 Q-PQ---LENALTG--MDLVIIPAGVPRKP--GMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       103 t-~d---~~~al~~--aDiVIi~ag~~~~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      . +|   +.+++++  +|+||.+||.....  ..+.   ...+..|+.....+++.+.+......||++|.
T Consensus        85 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS  155 (404)
T 1i24_A           85 DICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  155 (404)
T ss_dssp             CTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            1 22   3455676  99999999864211  0111   23567899999999999988765346666654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.72  E-value=8.6e-05  Score=71.28  Aligned_cols=108  Identities=15%  Similarity=0.243  Sum_probs=65.2

Q ss_pred             hccCCCCCC-eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCC------CCCeEEEEeCCCChh
Q 018433           37 RAKGGAAGF-KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD------TGAVVRGFLGQPQLE  107 (356)
Q Consensus        37 ~~~~~~~~~-KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~------~~~~v~~~~~t~d~~  107 (356)
                      ++++.+-.| ||+|||+ |.+|..++..|+..|.  +|.++|+++.  ...........      ....+..   ++|+.
T Consensus         7 ~~~~~~m~M~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~   80 (366)
T 1evy_A            7 SAKDELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF---TSDVE   80 (366)
T ss_dssp             --CCCCCCEEEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHH
T ss_pred             hhhhHhhccCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccccccccccceee---eCCHH
Confidence            344444445 9999999 9999999999988876  8999998751  11111110000      0112333   25677


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHH----HHHhC-C-CcEEEEecCCCCc
Q 018433          108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG----IAKCC-P-NATVNLISNPVNS  166 (356)
Q Consensus       108 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~----i~~~~-p-~a~viv~tNPv~~  166 (356)
                      ++++++|+||++...                ..+.+++..    +..+. | +.+|+.++|-.+.
T Consensus        81 ~~~~~aDvVilav~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           81 KAYNGAEIILFVIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHTTCSSEEECCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHcCCCEEEECCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            889999999998520                113333333    43332 5 6777777876543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.72  E-value=0.00018  Score=68.02  Aligned_cols=66  Identities=20%  Similarity=0.296  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..|||+|||+ |.+|..++..|+..|.  +|+++|+++.  .+..+....    +..   ++++.+++++||+||++.
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~l~~~g----~~~---~~~~~e~~~~aDvVi~~v   95 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPA--RAASLAALG----ATI---HEQARAAARDADIVVSML   95 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CEE---ESSHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHCC----CEe---eCCHHHHHhcCCEEEEEC
Confidence            4689999999 9999999999999887  9999998752  222333321    222   256788999999999985

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.72  E-value=6.4e-05  Score=70.77  Aligned_cols=67  Identities=12%  Similarity=0.157  Sum_probs=50.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .++|||+|||+ |.+|..++..|+..|+  +|+++|+++....  ++.+..    +..   .+++.+++++||+||++.
T Consensus        19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~g----~~~---~~~~~~~~~~aDvvi~~v   85 (310)
T 3doj_A           19 SHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKCD--ELVEHG----ASV---CESPAEVIKKCKYTIAML   85 (310)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CeE---cCCHHHHHHhCCEEEEEc
Confidence            34689999999 9999999999999988  9999999762211  222211    122   356788899999999985

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.71  E-value=0.00017  Score=68.18  Aligned_cols=120  Identities=13%  Similarity=0.175  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      ...|||+|||+ |.+|..++..|...+.  ..+|+++|+++.......+...  .  +..   +++..+++++||+||++
T Consensus        20 ~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~--G--~~~---~~~~~e~~~~aDvVila   91 (322)
T 2izz_A           20 FQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKM--G--VKL---TPHNKETVQHSDVLFLA   91 (322)
T ss_dssp             --CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHH--T--CEE---ESCHHHHHHHCSEEEEC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHc--C--CEE---eCChHHHhccCCEEEEE
Confidence            34579999999 9999999999998873  1389999987521122223221  1  222   13566888999999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      .- |   .            .+.++++.+.... |+.+|+.++|....- . +.+.+.+.  ++..++++.
T Consensus        92 v~-~---~------------~~~~vl~~l~~~l~~~~ivvs~s~gi~~~-~-l~~~l~~~--~~~~~vv~~  142 (322)
T 2izz_A           92 VK-P---H------------IIPFILDEIGADIEDRHIVVSCAAGVTIS-S-IEKKLSAF--RPAPRVIRC  142 (322)
T ss_dssp             SC-G---G------------GHHHHHHHHGGGCCTTCEEEECCTTCCHH-H-HHHHHHTT--SSCCEEEEE
T ss_pred             eC-H---H------------HHHHHHHHHHhhcCCCCEEEEeCCCCCHH-H-HHHHHhhc--CCCCeEEEE
Confidence            52 1   1            2344555666554 577888888887632 1 23333222  344567655

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.70  E-value=0.00016  Score=69.69  Aligned_cols=103  Identities=13%  Similarity=0.159  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCc-----hhHHHHHhcCC--------CCCeEEEEeCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT-----PGVTADISHMD--------TGAVVRGFLGQPQ  105 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~~-----~g~~~dl~~~~--------~~~~v~~~~~t~d  105 (356)
                      +|||+|||+ |.+|+.++..|+..|.     ..+|.++|+++.     ....+.-.+..        ....+..   ++|
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~---~~~   96 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA---HSD   96 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE---ESS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE---ECC
Confidence            369999999 9999999999987760     028999998763     22222111110        0112443   356


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH----hC-CCcEEEEecCCCCc
Q 018433          106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK----CC-PNATVNLISNPVNS  166 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~----~~-p~a~viv~tNPv~~  166 (356)
                      +.+++++||+||++..                ...+.++++.+..    +. |+.+++..+|..+.
T Consensus        97 ~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           97 LASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             THHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             HHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            7788999999999842                1235666777765    44 57788888876543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.69  E-value=0.00014  Score=68.81  Aligned_cols=114  Identities=18%  Similarity=0.232  Sum_probs=61.7

Q ss_pred             hccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCC
Q 018433           16 AHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTG   94 (356)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~   94 (356)
                      ..|.|.-.-|.+..-.-++       ...+||+|||+ |.+|..++..|...|+..+|+++|+++ ....+.+   ..  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~-------~~~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~---~G--   78 (314)
T 3ggo_A           12 SGLVPRGSHMKNIIKILKS-------LSMQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD---LG--   78 (314)
T ss_dssp             -----------------CC-------CSCSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH---TT--
T ss_pred             cCccccccCcCcCCchhhh-------cCCCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH---CC--
Confidence            3466766667665443111       12369999998 999999999999988766999999976 2111221   11  


Q ss_pred             CeEEEEeCCCChhh-hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433           95 AVVRGFLGQPQLEN-ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  161 (356)
Q Consensus        95 ~~v~~~~~t~d~~~-al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  161 (356)
                      .....   ++|+++ ++++||+||++...    .        .    +.++.+.+..+. |+++|+.++
T Consensus        79 ~~~~~---~~~~~~~~~~~aDvVilavp~----~--------~----~~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A           79 IIDEG---TTSIAKVEDFSPDFVMLSSPV----R--------T----FREIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             SCSEE---ESCTTGGGGGCCSEEEECSCG----G--------G----HHHHHHHHHHHSCTTCEEEECC
T ss_pred             Ccchh---cCCHHHHhhccCCEEEEeCCH----H--------H----HHHHHHHHhhccCCCcEEEECC
Confidence            11111   245667 89999999998521    1        1    234445555554 677766554

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=97.69  E-value=0.00034  Score=66.47  Aligned_cols=116  Identities=16%  Similarity=0.026  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHHHHhcCC--CCCeEEEEeCC-C---ChhhhhCC--C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD--TGAVVRGFLGQ-P---QLENALTG--M  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---g~~~dl~~~~--~~~~v~~~~~t-~---d~~~al~~--a  113 (356)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++...   ....++....  ....+..+.+. +   ++.+++++  .
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP   79 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence            6899999999999999999998886  99999986521   1111111100  01223332111 2   23345554  6


Q ss_pred             cEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEecC
Q 018433          114 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISN  162 (356)
Q Consensus       114 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~tN  162 (356)
                      |+||.+||.....  ..+....+..|+.....+++.+.+...  ...||++|.
T Consensus        80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS  132 (372)
T 1db3_A           80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAST  132 (372)
T ss_dssp             SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence            9999999864321  123445667899999999999988754  256666653

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.68  E-value=8.3e-05  Score=74.15  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC---------------CCCeEEEEeCCCChhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---------------TGAVVRGFLGQPQLEN  108 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~---------------~~~~v~~~~~t~d~~~  108 (356)
                      .|||+|||+ |.+|..+|..|+..+...+|+++|+++..  +..+....               ....++.   ++|+.+
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~~V~~~d~~~~~--~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t~~~~e   78 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEIRVTVVDVNESR--INAWNSPTLPIYEPGLKEVVESCRGKNLFF---STNIDD   78 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHHH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHHH
Confidence            479999999 99999999999987322399999997521  11222110               0012332   357778


Q ss_pred             hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCcc
Q 018433          109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNST  167 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~  167 (356)
                      ++++||+||++...|........+ -.-++..+.+.++.+.++. |+.+|++. |+|.+..
T Consensus        79 ~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~  138 (467)
T 2q3e_A           79 AIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAA  138 (467)
T ss_dssp             HHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHH
T ss_pred             HHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHH
Confidence            899999999997665432110000 0122334556666666654 45555554 5777653

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.68  E-value=0.00011  Score=68.07  Aligned_cols=97  Identities=12%  Similarity=0.078  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ++|||+|||+ |.+|..++..|...+...+|+++|+++...  ..+..... .. ..   ++|+++++++||+||++...
T Consensus         5 ~~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~-~~-~~---~~~~~~~~~~aDvVilavp~   76 (290)
T 3b1f_A            5 EEKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSR--DIALERGI-VD-EA---TADFKVFAALADVIILAVPI   76 (290)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHH--HHHHHTTS-CS-EE---ESCTTTTGGGCSEEEECSCH
T ss_pred             ccceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHH--HHHHHcCC-cc-cc---cCCHHHhhcCCCEEEEcCCH
Confidence            4579999998 999999999998765434899999875211  12222111 11 11   24566788999999998521


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHh-C-CCcEEEEecCC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-C-PNATVNLISNP  163 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~-p~a~viv~tNP  163 (356)
                                      ....++++.+..+ . |+.+|+.++|.
T Consensus        77 ----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           77 ----------------KKTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             ----------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             ----------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence                            1124556666665 4 67776655553

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.68  E-value=7.9e-05  Score=65.86  Aligned_cols=97  Identities=22%  Similarity=0.253  Sum_probs=63.4

Q ss_pred             Ce-EEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEE
Q 018433           45 FK-VAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII  118 (356)
Q Consensus        45 ~K-I~IIGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi  118 (356)
                      || |.|+||+|.+|+.++..|+ ..|.  +|++++++.. ....++...  ...+..+..    ..++.++++++|+||.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~-~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vv~   79 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLK-TRIPPEIID--HERVTVIEGSFQNPGXLEQAVTNAEVVFV   79 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHH-HHSCHHHHT--STTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCcc-ccchhhccC--CCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence            45 9999999999999999999 7887  9999998642 011122111  122222211    1234567899999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ++|..             |.. .+.+++.+++.... .||++|
T Consensus        80 ~ag~~-------------n~~-~~~~~~~~~~~~~~-~iv~iS  107 (221)
T 3r6d_A           80 GAMES-------------GSD-MASIVKALSRXNIR-RVIGVS  107 (221)
T ss_dssp             SCCCC-------------HHH-HHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCC-------------Chh-HHHHHHHHHhcCCC-eEEEEe
Confidence            98743             334 77788888775533 455554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.67  E-value=3.7e-05  Score=73.20  Aligned_cols=100  Identities=20%  Similarity=0.254  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC-----CCeEEE-EeCCCChhhhhCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-----GAVVRG-FLGQPQLENALTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~-----~~~v~~-~~~t~d~~~al~~aDiV  116 (356)
                      +.|||+|||+ |.+|..++..|...+.  +|.++|+++   ....+.....     ...... ...++|++ ++.++|+|
T Consensus         2 ~~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~V   74 (335)
T 3ghy_A            2 SLTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRATHDAA-ALGEQDVV   74 (335)
T ss_dssp             CCCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCHH-HHCCCSEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCHH-HcCCCCEE
Confidence            3589999999 9999999999999887  899999743   1112221110     000000 11135664 47999999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  165 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~  165 (356)
                      |++.-.                ..+.++++.+..+. |+..|+.++|...
T Consensus        75 ilavk~----------------~~~~~~~~~l~~~l~~~~~iv~~~nGi~  108 (335)
T 3ghy_A           75 IVAVKA----------------PALESVAAGIAPLIGPGTCVVVAMNGVP  108 (335)
T ss_dssp             EECCCH----------------HHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred             EEeCCc----------------hhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            998521                12445666666554 6888888899953

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.67  E-value=6.9e-05  Score=66.97  Aligned_cols=112  Identities=20%  Similarity=0.146  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .++|.|+||+|.+|++++..|+..|...+|+++|++.  .....  ....   ..+.. .....++.++++++|+||.++
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~--~~~~---~~~~~D~~d~~~~~~~~~~~d~vi~~a   92 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--YKNV---NQEVVDFEKLDDYASAFQGHDVGFCCL   92 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--GGGC---EEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc--cCCc---eEEecCcCCHHHHHHHhcCCCEEEECC
Confidence            4689999999999999999999888656899999876  11110  0110   00110 011234567788999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      |.... +....+.+..|......+++.+.+... ..|+++|.
T Consensus        93 g~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~iv~~SS  132 (242)
T 2bka_A           93 GTTRG-KAGAEGFVRVDRDYVLKSAELAKAGGC-KHFNLLSS  132 (242)
T ss_dssp             CCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             Ccccc-cCCcccceeeeHHHHHHHHHHHHHCCC-CEEEEEcc
Confidence            85421 112345667888888888888877543 35666554

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=97.67  E-value=0.00014  Score=68.42  Aligned_cols=115  Identities=22%  Similarity=0.224  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhh-
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENAL-  110 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al-  110 (356)
                      +.+.|+|.|+||+|++|++++..|+..|.     ..+|+++|++......     . ....+..+..    ..++.+++ 
T Consensus        11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----~-~~~~~~~~~~Dl~d~~~~~~~~~   84 (342)
T 2hrz_A           11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----G-FSGAVDARAADLSAPGEAEKLVE   84 (342)
T ss_dssp             CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----T-CCSEEEEEECCTTSTTHHHHHHH
T ss_pred             CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----c-cCCceeEEEcCCCCHHHHHHHHh
Confidence            34567999999999999999999988771     0289999986511100     0 1123333211    12344556 


Q ss_pred             CCCcEEEEcCCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEec
Q 018433          111 TGMDLVIIPAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLIS  161 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~t  161 (356)
                      .++|+||.+||..... .......+..|+.....+++.+.+..    +...||++|
T Consensus        85 ~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           85 ARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             TCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             cCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence            4899999999864210 11234556788888889998888765    234566554

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.66  E-value=0.00019  Score=67.62  Aligned_cols=110  Identities=17%  Similarity=0.064  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhCC--CcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALTG--MDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~~--aDiVI  117 (356)
                      +|+|.|+||+|++|++++..|+..|.  +|+++|++..... ..+.+.   ..+..+.+ -+|   +.+++++  +|+||
T Consensus        21 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~vi   94 (333)
T 2q1w_A           21 MKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGRR-EHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDAVV   94 (333)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccch-hhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcEEE
Confidence            47999999999999999999998886  9999998651100 011111   12322211 122   3456777  99999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .+||..........+ +..|+.....+++.+.+... ..||++|
T Consensus        95 h~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~-~~iV~~S  136 (333)
T 2q1w_A           95 HTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNV-GRFVYFQ  136 (333)
T ss_dssp             ECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTC-SEEEEEE
T ss_pred             ECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCC-CEEEEEC
Confidence            999865322222223 78899999999999887543 3555554

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=97.66  E-value=0.0001  Score=68.52  Aligned_cols=103  Identities=15%  Similarity=0.084  Sum_probs=57.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC--CcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~--aDiVIi~ag~  122 (356)
                      |||.|+||+|++|++++..|+..|.  +|+++|++....   .    ....++..   ..++.+++++  +|+||.++|.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~----~~~~Dl~d---~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---K----FEQVNLLD---SNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC--
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---C----eEEecCCC---HHHHHHHHHhhCCCEEEECCcc
Confidence            6899999999999999999998886  999999754210   0    00112221   1334566764  8999999986


Q ss_pred             CCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          123 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       123 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ....  ..+..+.+..|+.....+++.+.+..  ..+|++|
T Consensus        71 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~--~~~v~~S  109 (315)
T 2ydy_A           71 RRPDVVENQPDAASQLNVDASGNLAKEAAAVG--AFLIYIS  109 (315)
T ss_dssp             -----------------CHHHHHHHHHHHHHT--CEEEEEE
T ss_pred             cChhhhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence            4321  12334566789999999999988865  3666654

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.65  E-value=4.6e-05  Score=69.93  Aligned_cols=96  Identities=22%  Similarity=0.231  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  122 (356)
                      |||.|+||+|++|++++..|+..|.  +|+.+|+..     .|+.+.            .++.++++  ++|+||.+++.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d~------------~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITNI------------SQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            4899999999999999999998886  999998732     122211            23445566  69999999986


Q ss_pred             CCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          123 PRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       123 ~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .....  ....+.+..|+.....+++.+.+...  .+|++|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            53211  34566778999999999999998765  455554

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=97.63  E-value=0.00022  Score=66.29  Aligned_cols=115  Identities=9%  Similarity=-0.036  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCch-hHHHHHhcCCC-CCeEEEEe----CCCChhhhhCCCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTP-GVTADISHMDT-GAVVRGFL----GQPQLENALTGMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~~~-g~~~dl~~~~~-~~~v~~~~----~t~d~~~al~~aDiVI  117 (356)
                      +||.|+||+|++|++++..|+..|.  +|+.+++ +... .....+..... ...+..+.    ...++.++++++|+||
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   79 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF   79 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence            4899999999999999999999887  8888876 4310 00001111100 01122211    1134567889999999


Q ss_pred             EcCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          118 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .+|+.......+ ..+.+..|+.....+++.+.+...-..||++|
T Consensus        80 h~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~S  124 (322)
T 2p4h_X           80 HTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTS  124 (322)
T ss_dssp             ECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             EcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            998642111111 22467889999999999888762123555554

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.63  E-value=1.6e-05  Score=76.13  Aligned_cols=93  Identities=19%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||.|+||+|++|++++..|+..+.. +++.+|++                     ....++.++++++|+||.+++...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~---------------------~d~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQ---------------------TKEEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTT---------------------CCHHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCC---------------------CCHHHHHHHhccCCEEEECCcCCC
Confidence            79999999999999999999887642 78888874                     011345567889999999988643


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ..  ...+....|+.....+++.+++......++.+|
T Consensus        59 ~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           59 PE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             TT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            21  122234567777888888888776555566554

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.63  E-value=0.00011  Score=67.27  Aligned_cols=94  Identities=14%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~e-l~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      .|||+|||+ |.+|..++..|...+.  + +.++|+++..  +..+....   .+..   +++++++++++|+||++...
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~--~~~~~~~~---g~~~---~~~~~~~~~~~Dvvi~av~~   78 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEES--ARELAQKV---EAEY---TTDLAEVNPYAKLYIVSLKD   78 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHH--HHHHHHHT---TCEE---ESCGGGSCSCCSEEEECCCH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHH--HHHHHHHc---CCce---eCCHHHHhcCCCEEEEecCH
Confidence            479999999 9999999999988775  5 8899987521  11222110   1222   24667788999999998521


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  164 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv  164 (356)
                                   .   ...++++.+.+.. |+.+|+..++-.
T Consensus        79 -------------~---~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           79 -------------S---AFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             -------------H---HHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             -------------H---HHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                         1   1256666676665 677777776543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.63  E-value=9.5e-05  Score=68.01  Aligned_cols=99  Identities=17%  Similarity=0.237  Sum_probs=64.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC-CCCe--EEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAV--VRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~-~~~~--v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |||+|||+ |.+|+.++..|...+.  +|.++|+++....  ++.... ....  ....  .++ .++++++|+||++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~--~~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLT--AND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEE--ESC-HHHHHTCSEEEECSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeee--ecC-ccccCCCCEEEEEec
Confidence            69999999 9999999999999887  9999999761111  121111 0111  1221  134 467899999999863


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                      ..    .            +.++.+.+..+. |+.+|+..+|..+..
T Consensus        73 ~~----~------------~~~v~~~l~~~l~~~~~vv~~~~g~~~~  103 (291)
T 1ks9_A           73 AW----Q------------VSDAVKSLASTLPVTTPILLIHNGMGTI  103 (291)
T ss_dssp             GG----G------------HHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             HH----h------------HHHHHHHHHhhCCCCCEEEEecCCCCcH
Confidence            21    1            244555666554 677888889987654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.61  E-value=0.00063  Score=61.95  Aligned_cols=120  Identities=19%  Similarity=0.142  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-----
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-----  110 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-----  110 (356)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++....  ..+..+.. -+|.   .+++     
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~  102 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLA  102 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999987  899999976  333334444322  23333221 1232   1222     


Q ss_pred             --CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecCCCC
Q 018433          111 --TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNPVN  165 (356)
Q Consensus       111 --~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNPv~  165 (356)
                        ...|+||..||.....+    .+   ....+..|+.....+.+.+..   ....+.||++|....
T Consensus       103 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  169 (262)
T 3rkr_A          103 AHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAG  169 (262)
T ss_dssp             HHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCS
T ss_pred             hcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhh
Confidence              35899999998732221    11   234456666555555554432   234677787775443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.61  E-value=0.00014  Score=67.91  Aligned_cols=91  Identities=20%  Similarity=0.294  Sum_probs=60.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      .|||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+.+..    +..   +++++++++ ||+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMT--PLAEAG----ATL---ADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSH--HHHHTT----CEE---CSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CEE---cCCHHHHHh-CCEEEEECCCh
Confidence            469999999 9999999999998887  8999999872111  122211    222   357778888 99999985321


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                                     ..++++.+.+.... |+.+|+..|+
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence                           11334445665554 5666665553

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.61  E-value=7.2e-05  Score=70.44  Aligned_cols=114  Identities=16%  Similarity=0.187  Sum_probs=71.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC-----CCCeEEE--EeCCCChhhhhCCCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGAVVRG--FLGQPQLENALTGMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~-----~~~~v~~--~~~t~d~~~al~~aDiVI  117 (356)
                      |||+|||+ |.+|..++..|...+.  +|.++|+++.  .  .+....     .......  ...+++. +++.++|+||
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~--~--~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~vi   74 (312)
T 3hn2_A            3 LRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY--E--AIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLVL   74 (312)
T ss_dssp             -CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH--H--HHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH--H--HHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEEE
Confidence            69999999 9999999999999887  8999998752  1  122110     0011111  0112455 5578999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      ++.-    +..            +.++++.++.+- |+..|+.+.|-.+....     +.+.  +|..+|++.
T Consensus        75 lavk----~~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~-----l~~~--~~~~~v~~~  124 (312)
T 3hn2_A           75 VGLK----TFA------------NSRYEELIRPLVEEGTQILTLQNGLGNEEA-----LATL--FGAERIIGG  124 (312)
T ss_dssp             ECCC----GGG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHH-----HHHH--TCGGGEEEE
T ss_pred             EecC----CCC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHH-----HHHH--CCCCcEEEE
Confidence            9852    111            224455566554 68888888898875532     2333  556677654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.59  E-value=0.00027  Score=66.68  Aligned_cols=101  Identities=20%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC-----CCCCeEEE-EeCCCChhhhhCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTGAVVRG-FLGQPQLENALTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~-----~~~~~v~~-~~~t~d~~~al~~aDiVI  117 (356)
                      ++||+|||+ |.+|..++..|+..+.  +|.++ .++..  ...+...     ........ ...++|. ++++++|+||
T Consensus        19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~--~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   91 (318)
T 3hwr_A           19 GMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQH--VQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVL   91 (318)
T ss_dssp             -CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHH--HHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhH--HHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEE
Confidence            469999999 9999999999999887  89999 65411  1111110     00011111 1113565 4579999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                      ++.-..                .+.++++.+..+. |+..|+.++|..+..
T Consensus        92 lavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~  126 (318)
T 3hwr_A           92 FCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENA  126 (318)
T ss_dssp             ECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHH
T ss_pred             EEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcH
Confidence            985211                1345666676654 678888889999865

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.59  E-value=0.00022  Score=67.42  Aligned_cols=79  Identities=18%  Similarity=0.123  Sum_probs=53.9

Q ss_pred             ccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCC-----chhHHHHHhc
Q 018433           17 HLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN-----TPGVTADISH   90 (356)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~-----~~g~~~dl~~   90 (356)
                      -+.++|+-|-.|               +|||+|||+ |.+|..++..|+..| .  +|+++|+++     .......+..
T Consensus        12 ~~~~~~~~~~~M---------------~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~   73 (317)
T 4ezb_A           12 DLGTENLYFQSM---------------MTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAE   73 (317)
T ss_dssp             ---CCCHHHHTS---------------CCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHH
T ss_pred             ccCcccCccccc---------------CCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHH
Confidence            356777766543               269999999 999999999999988 6  999999974     1122222332


Q ss_pred             CCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           91 MDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        91 ~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ..  .    .  ++++.+++++||+||++..
T Consensus        74 ~g--~----~--~~s~~e~~~~aDvVi~avp   96 (317)
T 4ezb_A           74 LG--V----E--PLDDVAGIACADVVLSLVV   96 (317)
T ss_dssp             TT--C----E--EESSGGGGGGCSEEEECCC
T ss_pred             CC--C----C--CCCHHHHHhcCCEEEEecC
Confidence            21  1    1  1145688999999999853

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=97.58  E-value=0.00026  Score=70.58  Aligned_cols=118  Identities=14%  Similarity=0.063  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhH-HHHHhcCCC--------------CCeEEEEeCC--
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGV-TADISHMDT--------------GAVVRGFLGQ--  103 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~-~~dl~~~~~--------------~~~v~~~~~t--  103 (356)
                      .++++|.|+||+|++|+.++..|+..+. ..+|++++++..... ...+.+...              ...+..+.+.  
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~  150 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS  150 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence            4568999999999999999999988722 239999998762111 111111100              1234433221  


Q ss_pred             --------CChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          104 --------PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       104 --------~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                              .++.++++++|+||.+|+....  ....+.+..|+.....+++.+.+...+.+|.+.|
T Consensus       151 ~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          151 EPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             SGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             CcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence                    1245567899999999986432  2223456789999999999988765554444444

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.57  E-value=0.00023  Score=62.14  Aligned_cols=106  Identities=12%  Similarity=0.090  Sum_probs=71.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  119 (356)
                      .|||.|+||+|++|++++..|+..+...+|++++++...      .+    ..+..+..    ..++.+++  +|+||.+
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~~----~~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EH----PRLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CC----TTEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------cC----CCceEEeccccCHHHHHHhh--hcEEEEC
Confidence            469999999999999999999998865689999987622      00    11222111    01222333  8999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      +|.......+..++...|......+++.+.+.... .++++|.
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss  114 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSA  114 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECC
Confidence            98643222345566788999999999998876433 4555553

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.57  E-value=0.00029  Score=65.23  Aligned_cols=92  Identities=20%  Similarity=0.297  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||+|||++|.+|..++..|...++  +|+++|+++..  ...+...  .  +..    ++..+++++||+||++...  
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~--g--~~~----~~~~~~~~~aDvVi~av~~--   77 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEG--RDRLQGM--G--IPL----TDGDGWIDEADVVVLALPD--   77 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHH--HHHHHHT--T--CCC----CCSSGGGGTCSEEEECSCH--
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhc--C--CCc----CCHHHHhcCCCEEEEcCCc--
Confidence            5999999879999999999998887  99999987511  1122221  1  111    1345788999999998521  


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  164 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv  164 (356)
                                    ..+.++.+.+.... |+.+|+..|+..
T Consensus        78 --------------~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           78 --------------NIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             --------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence                          01456666776654 577776666544

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.57  E-value=0.00018  Score=68.99  Aligned_cols=171  Identities=14%  Similarity=0.020  Sum_probs=97.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-C---ChhhhhCCCcEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---QLENALTGMDLVI  117 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~---d~~~al~~aDiVI  117 (356)
                      +.|||.|+||+|++|++++..|+..+ .  +|+++|++..... ..+..   ...+..+.+. +   ++.++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            35799999999999999999999888 6  9999998651110 01110   1233332211 1   2445778999999


Q ss_pred             EcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHH--HhC---CC-CCCCEEE
Q 018433          118 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFK--KAG---TY-DPKKLLG  188 (356)
Q Consensus       118 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~~~~~--~~~---~~-~~~kviG  188 (356)
                      .+++.....  ..+..+.+..|+.....+++.+.+. ... .+|.+|... +...--...+.  +..   .. ++...+|
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~-vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~  182 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGC-SIAEKTFDDAKATEETDIVSLHNNDSPYS  182 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC---------------CCCCCCCSSCCCSHHH
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHH-HcCCCCCCCcCcccccccccccCCCCchH
Confidence            999854211  0134556788999999999998775 333 455554321 10000000001  111   11 2233445


Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      .+.....++-..+++..|++..-++ +.++|...
T Consensus       183 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          183 MSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            4545555555556666677665553 56777543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.57  E-value=0.001  Score=61.11  Aligned_cols=96  Identities=17%  Similarity=0.232  Sum_probs=60.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC-CCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~ag~~  123 (356)
                      +||+|||+ |.+|..++..|...+...+|+++|+++...  ..+....  .....   ++|+.++++ +||+||++... 
T Consensus         2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g--~~~~~---~~~~~~~~~~~aDvVilavp~-   72 (281)
T 2g5c_A            2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESI--SKAVDLG--IIDEG---TTSIAKVEDFSPDFVMLSSPV-   72 (281)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHH--HHHHHTT--SCSEE---ESCGGGGGGTCCSEEEECSCH-
T ss_pred             cEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHH--HHHHHCC--Ccccc---cCCHHHHhcCCCCEEEEcCCH-
Confidence            58999998 999999999999877645899999875211  1122211  11111   245667889 99999998521 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  164 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv  164 (356)
                                 ..    ..+++..+..+. |+.+|++++|..
T Consensus        73 -----------~~----~~~v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           73 -----------RT----FREIAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             -----------HH----HHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             -----------HH----HHHHHHHHHhhCCCCcEEEECCCCc
Confidence                       11    224444454443 677777766543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.57  E-value=0.00012  Score=59.42  Aligned_cols=73  Identities=22%  Similarity=0.234  Sum_probs=45.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh---h-hhhCCCcEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---E-NALTGMDLVI  117 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~-~al~~aDiVI  117 (356)
                      .+.|||+|+|+ |.+|..++..|...+.  +++++|.++..  ...+.... ...+. ....++.   . ..++++|+||
T Consensus         2 ~~~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~~-~~~~~-~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            2 SHGMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVI-NGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEE-ESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHhc-CcEEE-EcCCCCHHHHHHcCcccCCEEE
Confidence            34589999999 9999999999998886  89999987521  11222110 11111 1011222   1 2368999999


Q ss_pred             EcCC
Q 018433          118 IPAG  121 (356)
Q Consensus       118 i~ag  121 (356)
                      ++.+
T Consensus        75 ~~~~   78 (140)
T 1lss_A           75 AVTG   78 (140)
T ss_dssp             ECCS
T ss_pred             EeeC
Confidence            9864

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=97.56  E-value=0.00014  Score=67.73  Aligned_cols=100  Identities=13%  Similarity=0.122  Sum_probs=70.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag  121 (356)
                      .|||.|+||+|++|++++..|+..+.  ++++++.+..    .|+.+            ..++.++++  ++|+||.+++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~~----~D~~d------------~~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLD------------SRAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTC------------HHHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCcc----CCccC------------HHHHHHHHHhcCCCEEEEcCe
Confidence            47999999999999999999998887  7888876420    12211            123456677  9999999998


Q ss_pred             CCCCC---CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          122 VPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       122 ~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      .....   ..+..+.+..|+.....+++.+.+.... .+|.+|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS  107 (321)
T 1e6u_A           65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGS  107 (321)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcc
Confidence            64211   1233556788999999999999876433 5565553

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.55  E-value=0.00033  Score=62.74  Aligned_cols=103  Identities=19%  Similarity=0.199  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hh-HHHHHhcCCCCCeEEEEeCCCChhhhhC----CCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG-VTADISHMDTGAVVRGFLGQPQLENALT----GMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g-~~~dl~~~~~~~~v~~~~~t~d~~~al~----~aDiVI  117 (356)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++..  .. ...|+.+.            .+++++++    +.|+||
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRE------------TAVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHHHHTTCCSEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccH------------HHHHHHHHHcCCCccEEE
Confidence            3799999999999999999999887  8999998761  10 11122211            12233343    899999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      ..||.... .......+..|+.....+.+.+.+.   .....+|++|.
T Consensus        68 ~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           68 CCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             ECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             ECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            99987542 2234556778887777777766655   23356776654

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=97.55  E-value=8.5e-05  Score=68.46  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC--CcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~--aDiVIi~ag~  122 (356)
                      |||.|+||+|++|++++..|+ .+.  +|+.+|++.. ....|+.+            ..++.+++++  +|+||.+++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~-~~~~D~~d------------~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK-EFCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS-SSCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc-cccccCCC------------HHHHHHHHHhcCCCEEEECccc
Confidence            689999999999999999998 776  9999998651 00011111            1234566766  9999999986


Q ss_pred             CCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          123 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       123 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ...  ...+..+.+..|+.....+++.+.+...  .++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            431  1134456678899999999999887643  566654

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=97.53  E-value=0.00036  Score=65.12  Aligned_cols=110  Identities=18%  Similarity=0.076  Sum_probs=71.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhC--CCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALT--GMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~--~aDiVI  117 (356)
                      +|||.|+||+|++|++++..|+..+.  +|+.+|++..... ..+..     .+..+.. -+   ++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-----GAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-----TSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-----CcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            36899999999999999999999886  8999997651100 11111     1121111 12   2345666  899999


Q ss_pred             EcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          118 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       118 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      .+++.....  ..+..+.+..|+.....+++.+.+.... .+|++|.
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss  118 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSST  118 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCC
Confidence            999864211  0233456778999999999998876433 4555543

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.53  E-value=0.0002  Score=63.82  Aligned_cols=114  Identities=15%  Similarity=0.093  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .+++|.|+||+|++|++++..|+..+...+|++++++...  ..++...  ...+.. .....++.++++++|+||.++|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~--~~~~~~~--~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   78 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG--KEKIGGE--ADVFIGDITDADSINPAFQGIDALVILTS   78 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHH--HHHTTCC--TTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCc--hhhcCCC--eeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence            3579999999999999999999988322399999986411  1122111  011111 0011245577899999999988


Q ss_pred             CCCC------------CCCc---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          122 VPRK------------PGMT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       122 ~~~~------------~g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ....            +...   .......|+.....+++.+.+.... .+|++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  132 (253)
T 1xq6_A           79 AVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG  132 (253)
T ss_dssp             CCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             ccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            5421            1110   1134578888889999998877543 555554

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.52  E-value=0.0004  Score=62.38  Aligned_cols=116  Identities=17%  Similarity=0.171  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .+++++      
T Consensus        11 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999887  899999876  222333343221  22222211 122   223333      


Q ss_pred             -CCcEEEEcCCCCCCC--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          112 -GMDLVIIPAGVPRKP--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                       +.|+||..+|.....  ..+   ....+..|+.....+.+.+...   ...+.|+++|..
T Consensus        87 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  147 (255)
T 1fmc_A           87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSM  147 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcch
Confidence             899999999864321  222   2345567776655555554322   234677777643

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.52  E-value=0.00036  Score=65.69  Aligned_cols=96  Identities=24%  Similarity=0.270  Sum_probs=62.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CCchhHHHHHhcCCC----C---CeEEEEeCCC--ChhhhhCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDT----G---AVVRGFLGQP--QLENALTGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~--~~~~g~~~dl~~~~~----~---~~v~~~~~t~--d~~~al~~a  113 (356)
                      |||+|||+ |.+|+.++..|...+.  +|.++|+  ++.  ....+.....    .   ..+..   ++  ++.++++++
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~   72 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTE--ILKSISAGREHPRLGVKLNGVEI---FWPEQLEKCLENA   72 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHH--HHHHHHTTCCBTTTTBCCCSEEE---ECGGGHHHHHTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHH--HHHHHHHhCcCcccCccccceEE---ecHHhHHHHHhcC
Confidence            69999999 9999999999998887  9999998  541  1122222110    0   11232   23  666788999


Q ss_pred             cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          114 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       114 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      |+||++...+                .+.++++.+....|+..|+.++|..
T Consensus        73 D~vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           73 EVVLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             SEEEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             CEEEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999985321                1234444454423677888888776

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.51  E-value=9.2e-05  Score=68.70  Aligned_cols=65  Identities=14%  Similarity=0.176  Sum_probs=48.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ++||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+.+..    +..   ++++.+++++||+||++.
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCA--PLVALG----ARQ---ASSPAEVCAACDITIAML   65 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGH--HHHHHT----CEE---CSCHHHHHHHCSEEEECC
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHHcCCEEEEEc
Confidence            368999999 9999999999998887  8999999862211  122111    121   356788899999999985

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.51  E-value=0.0014  Score=60.07  Aligned_cols=180  Identities=17%  Similarity=0.190  Sum_probs=94.6

Q ss_pred             cCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCC
Q 018433           18 LYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTG   94 (356)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~   94 (356)
                      -|..++.--.+..|++-...  ...+.+++.|+||+|.+|.+++..|+..|.  .|++.|.+.   ......++....  
T Consensus         7 ~~~~~~~~~~~~~~~~mm~~--~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--   80 (271)
T 3v2g_A            7 HSSGVDLGTENLYFQSMMTS--ISLAGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--   80 (271)
T ss_dssp             -------------CHHHHTT--TCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--
T ss_pred             ccccccccccccchhhhccc--cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--
Confidence            34444444445555543221  123445899999999999999999999988  899998765   233333444322  


Q ss_pred             CeEEEEe-CCCCh---hhhhC-------CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcE
Q 018433           95 AVVRGFL-GQPQL---ENALT-------GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNAT  156 (356)
Q Consensus        95 ~~v~~~~-~t~d~---~~al~-------~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~  156 (356)
                      ..+..+. .-+|.   +++++       ..|++|..||......   .+   ....+..|+.....+.+.+...- ..+.
T Consensus        81 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~  160 (271)
T 3v2g_A           81 GRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGR  160 (271)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCE
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCE
Confidence            2222221 11232   22333       7899999998753221   11   33456778777777777776654 4577


Q ss_pred             EEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccE
Q 018433          157 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  216 (356)
Q Consensus       157 viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~v  216 (356)
                      ||+++......           .++|..-.++.+......+-+.++..++  +..|++..
T Consensus       161 iv~isS~~~~~-----------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~  207 (271)
T 3v2g_A          161 IITIGSNLAEL-----------VPWPGISLYSASKAALAGLTKGLARDLG--PRGITVNI  207 (271)
T ss_dssp             EEEECCGGGTC-----------CCSTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEE
T ss_pred             EEEEeChhhcc-----------CCCCCchHHHHHHHHHHHHHHHHHHHhh--hhCeEEEE
Confidence            77776543221           1122222334433333456667777763  33454433

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.51  E-value=0.00024  Score=67.36  Aligned_cols=96  Identities=20%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC---CCC----eEEEEeCCCChhhhhCCCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---TGA----VVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~---~~~----~v~~~~~t~d~~~al~~aDiV  116 (356)
                      +|||+|||+ |.+|+.++..|+..|.  +|.++|+++..  +..+....   ..+    .+..   ++|+.+ ++++|+|
T Consensus        14 ~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~--~~~l~~~g~~~~~~~~~~~~~~---~~~~~~-~~~aDvV   84 (335)
T 1z82_A           14 EMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEI--VDLINVSHTSPYVEESKITVRA---TNDLEE-IKKEDIL   84 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHHSCBTTBTTCCCCSEE---ESCGGG-CCTTEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHhCCcccCCCCeeeEEE---eCCHHH-hcCCCEE
Confidence            589999999 9999999999999887  99999987521  12222111   000    1232   245666 8999999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  166 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~  166 (356)
                      |++.-.                ..+.++++.+..  ++..+|.++|..+.
T Consensus        85 il~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~~  116 (335)
T 1z82_A           85 VIAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIEI  116 (335)
T ss_dssp             EECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred             EEECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence            998521                113344444433  77788888887653

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=97.51  E-value=0.00061  Score=65.37  Aligned_cols=115  Identities=16%  Similarity=0.114  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCch----------hHHHH-HhcCCC---CCe---EEEEeCC-C
Q 018433           44 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTP----------GVTAD-ISHMDT---GAV---VRGFLGQ-P  104 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~~~----------g~~~d-l~~~~~---~~~---v~~~~~t-~  104 (356)
                      .|+|.|+||+|++|++++..|+ ..+.  +|+++|++...          ....+ +.+...   ...   +..+... +
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   79 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence            4799999999999999999999 8887  99999976411          11111 111110   001   3332211 2


Q ss_pred             C---hhhhhC--C-CcEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          105 Q---LENALT--G-MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       105 d---~~~al~--~-aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |   +.++++  + +|+||.+|+.....  .....+.+..|+.....+++.+.+.... .||++|
T Consensus        80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~S  143 (397)
T 1gy8_A           80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSS  143 (397)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEEC
Confidence            2   334565  6 99999999864211  1233456788999999999998876543 455443

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=97.49  E-value=0.0004  Score=65.16  Aligned_cols=113  Identities=18%  Similarity=0.161  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC--CCcEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~--~aDiV  116 (356)
                      |||.|+||+|++|++++..|+..|.  +|+++|...  ......++.... ...+..+.. -+|   +.++++  +.|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            6899999999999999999999887  899998643  111111222110 011121111 122   334454  58999


Q ss_pred             EEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          117 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       117 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |.+||.....  .....+.+..|+.....+++.+++.... .||++|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  123 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEc
Confidence            9999854210  0123456788999999999988876543 455554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.49  E-value=0.00035  Score=66.35  Aligned_cols=99  Identities=14%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHh----cCCCCCeEEEEeCCCChhhhhCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADIS----HMDTGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~----~~~~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      ++|||+|||+ |.+|..++..|...+.  +|.++|+++.  ........    .............++|++++++++|+|
T Consensus         3 ~~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   79 (359)
T 1bg6_A            3 ESKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI   79 (359)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEE
Confidence            3479999999 9999999999998887  8999998751  11111100    000000000000135777888999999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI  160 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~  160 (356)
                      |++....    .            ..++++.+..+. |+..|+..
T Consensus        80 i~~v~~~----~------------~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           80 LIVVPAI----H------------HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EECSCGG----G------------HHHHHHHHGGGCCTTCEEEES
T ss_pred             EEeCCch----H------------HHHHHHHHHHhCCCCCEEEEc
Confidence            9986322    0            134556666555 46655555

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.49  E-value=0.0016  Score=59.53  Aligned_cols=120  Identities=18%  Similarity=0.169  Sum_probs=71.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-----
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-----  110 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-----  110 (356)
                      .+.++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|.   .+++     
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  104 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA  104 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999987  899999876  222233343321  22332211 1222   2222     


Q ss_pred             --CCCcEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCC
Q 018433          111 --TGMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVN  165 (356)
Q Consensus       111 --~~aDiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~  165 (356)
                        .+.|+||..||......   .   .....+..|+.....+.+.+...   ...+.||++|....
T Consensus       105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~  170 (272)
T 1yb1_A          105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG  170 (272)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred             HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhh
Confidence              37899999998753221   1   12344566766644444444322   24567777776543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.49  E-value=0.00031  Score=65.90  Aligned_cols=66  Identities=15%  Similarity=0.226  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..+||+|||. |.+|..++..|+..++  +|+++|+++..  ...+....    ...   .+++.+++++||+||++.
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~v   73 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGK--AAALVAAG----AHL---CESVKAALSASPATIFVL   73 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHT----CEE---CSSHHHHHHHSSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEEe
Confidence            3579999999 9999999999999887  89999987621  11222211    121   356788899999999985

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=97.49  E-value=0.00011  Score=68.33  Aligned_cols=162  Identities=15%  Similarity=0.075  Sum_probs=92.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhC--CCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi~ag  121 (356)
                      |||.|+||+|++|++++..|+..|.  +|+++|..... ....+.. .. ..+.. .....++.++++  ++|+||.+++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~~~~~~-~~-~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATG-KRENVPK-GV-PFFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSC-CGGGSCT-TC-CEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcC-chhhccc-Ce-EEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            6899999999999999999998887  89999974310 0001111 00 01110 000112345666  8999999987


Q ss_pred             CCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC--------CC-ccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          122 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP--------VN-STVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       122 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP--------v~-~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      .....  ..+....+..|+.....+++.+.+.... .+|++|..        .+ ..+        +....++...+|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~~g~~~~~~~~~--------E~~~~~~~~~Y~~s  146 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGAIYGEVPEGERAE--------ETWPPRPKSPYAAS  146 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHHHHCCCCTTCCBC--------TTSCCCCCSHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChhhcCCCCCCCCcC--------CCCCCCCCChHHHH
Confidence            54210  0123456778999999999998876533 45555432        00 000        00111223345555


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      .....++-..+++..|++..-++ +.++|..
T Consensus       147 K~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~  177 (311)
T 2p5y_A          147 KAAFEHYLSVYGQSYGLKWVSLRYGNVYGPR  177 (311)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeccccCcC
Confidence            44445555556666777655554 4567753

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.48  E-value=0.0013  Score=60.37  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||+|||+ |.+|..++..|...++  +|+++|+++...  ..+....  .....   ++|+.++ +++|+||++...  
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g--~~~~~---~~~~~~~-~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTC--EKAVERQ--LVDEA---GQDLSLL-QTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTT--SCSEE---ESCGGGG-TTCSEEEECSCH--
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhCC--CCccc---cCCHHHh-CCCCEEEEECCH--
Confidence            69999998 9999999999998887  899999875211  1122211  11122   2456677 999999998521  


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                                    ..+.++++.+..+. |+.+|+.++|
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          12445566666654 5777766544

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.48  E-value=0.00027  Score=66.46  Aligned_cols=113  Identities=19%  Similarity=0.108  Sum_probs=71.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-------hhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC-
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-------PGVTADISHMDTGAVVRGFLG-QPQ---LENALT-  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~-------~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-  111 (356)
                      |+|.|+||+|++|++++..|+..|.  +|+++|++. .       .....++.... ...+..+.. -+|   +.++++ 
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHh
Confidence            6899999999999999999998886  899998743 1       11122222110 112222111 122   345566 


Q ss_pred             -CCcEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          112 -GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                       ++|+||.+||.....  .....+.+..|+.....+++.+.+.... .||++|
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  131 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS  131 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence             899999999854211  0233456788999999999998876433 455554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.47  E-value=0.00015  Score=67.24  Aligned_cols=65  Identities=18%  Similarity=0.230  Sum_probs=48.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |||+|||+ |.+|..++..|...+.  +|.++|+++..  ...+....    +..   ++++.++++++|+||++..
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEA--IADVIAAG----AET---ASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            69999998 9999999999998887  89999987521  11222211    222   3567788999999999863

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.46  E-value=0.00017  Score=65.40  Aligned_cols=96  Identities=13%  Similarity=0.182  Sum_probs=61.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~--~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      |||+|||+ |.+|..++..|...++  ..+|+++|+++..  ..++.+..   .+..   ++|..+++++||+||++. .
T Consensus         3 ~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~--~~~~~~~~---g~~~---~~~~~e~~~~aDvVilav-~   72 (247)
T 3gt0_A            3 KQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTAN--LKNASEKY---GLTT---TTDNNEVAKNADILILSI-K   72 (247)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHH--HHHHHHHH---CCEE---CSCHHHHHHHCSEEEECS-C
T ss_pred             CeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHH--HHHHHHHh---CCEE---eCChHHHHHhCCEEEEEe-C
Confidence            69999999 9999999999998875  3589999997521  11222110   1222   356778899999999986 1


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  165 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~  165 (356)
                      |   ..            +.++.+.+..+. |+..++..++.+.
T Consensus        73 ~---~~------------~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           73 P---DL------------YASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             T---TT------------HHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             H---HH------------HHHHHHHHHhhcCCCCEEEEecCCCC
Confidence            2   11            445556666655 4666654555554

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.46  E-value=0.0002  Score=66.95  Aligned_cols=66  Identities=20%  Similarity=0.140  Sum_probs=48.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +|||+|||+ |.+|..++..|+..|+  +|+++|+++.  .+..+....  ...  .  ++++.+++++||+||++.
T Consensus         7 ~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~~~~~g--~~~--~--~~~~~e~~~~aDvvi~~v   72 (303)
T 3g0o_A            7 DFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQ--ACANLLAEG--ACG--A--AASAREFAGVVDALVILV   72 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTT--CSE--E--ESSSTTTTTTCSEEEECC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHH--HHHHHHHcC--Ccc--c--cCCHHHHHhcCCEEEEEC
Confidence            479999999 9999999999999988  9999998752  122233221  111  1  245678899999999985

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=97.46  E-value=8.4e-05  Score=67.66  Aligned_cols=103  Identities=18%  Similarity=0.195  Sum_probs=71.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~a  120 (356)
                      +||.|+||+|++|++++..|+..+.  +|+++|++.....    .     ..+..+..    ..++.++++++|+||.++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~----~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   71 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAA----E-----AHEEIVACDLADAQAVHDLVKDCDGIIHLG   71 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCC----C-----TTEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCcccc----C-----CCccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence            3899999999999999999988875  8999998752110    0     11121111    123456789999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |..  ........+..|+.....+++.+.+... ..||++|
T Consensus        72 ~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~iv~~S  109 (267)
T 3ay3_A           72 GVS--VERPWNDILQANIIGAYNLYEAARNLGK-PRIVFAS  109 (267)
T ss_dssp             SCC--SCCCHHHHHHHTHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             cCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCC-CEEEEeC
Confidence            865  2233456678899999999999887543 3555554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.44  E-value=0.00026  Score=65.03  Aligned_cols=100  Identities=17%  Similarity=0.080  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  119 (356)
                      |||.|+||+|++|++++..|... +.  +|++++++....  .++...    .+..+.+    ..++.++++++|+||.+
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~----~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRG----KVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBT----TBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhC----CCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            78999999999999999998876 66  888998875211  112111    1222111    12456789999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ++....        ...|+...+.+++.+++.... .|+++|
T Consensus        73 a~~~~~--------~~~~~~~~~~l~~aa~~~gv~-~iv~~S  105 (289)
T 3e48_A           73 PSIIHP--------SFKRIPEVENLVYAAKQSGVA-HIIFIG  105 (289)
T ss_dssp             CCCCCS--------HHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCCCcc--------chhhHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            875321        134777788889988876544 444443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.44  E-value=0.00051  Score=64.18  Aligned_cols=76  Identities=18%  Similarity=0.288  Sum_probs=55.6

Q ss_pred             CeEEEEc-CCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILG-AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIG-a~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      +||+||| + |.+|..++..|...|+  +|.++|+++.                      .+..+++++||+||++.-..
T Consensus        22 ~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~----------------------~~~~~~~~~aDvVilavp~~   76 (298)
T 2pv7_A           22 HKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDW----------------------AVAESILANADVVIVSVPIN   76 (298)
T ss_dssp             CCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCG----------------------GGHHHHHTTCSEEEECSCGG
T ss_pred             CEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCcc----------------------cCHHHHhcCCCEEEEeCCHH
Confidence            4899999 7 9999999999998887  8999998642                      13457889999999985221


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  161 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  161 (356)
                                      .+.++++.+..+. |+++|+.++
T Consensus        77 ----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           77 ----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             ----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             ----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence                            1445556666554 567665553

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.44  E-value=0.00058  Score=64.26  Aligned_cols=69  Identities=12%  Similarity=0.191  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      +|||+|||+ |.+|..++..|+..|+ .+|+++|++........+....    +..   .+++.+++++||+||++..
T Consensus        24 ~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   92 (312)
T 3qsg_A           24 AMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG----VSC---KASVAEVAGECDVIFSLVT   92 (312)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT----CEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC----CEE---eCCHHHHHhcCCEEEEecC
Confidence            479999999 9999999999998774 4899999962011111222221    222   3567788999999999853

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=97.44  E-value=0.00011  Score=68.04  Aligned_cols=108  Identities=21%  Similarity=0.129  Sum_probs=68.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++||.|+||+|++|++++..|+..|.  +|+.+|++...  +....+.+......+..      ...++.++|+||.+++
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~d~vi~~a~   78 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLEL------EERDLSDVRLVYHLAS   78 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGC------CHHHHTTEEEEEECCC
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeE------EeCccccCCEEEECCc
Confidence            57999999999999999999999887  89999986521  11001111000011111      2344569999999988


Q ss_pred             CCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          122 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       122 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .....  .....+.+. |+.....+++.+.+.... .+|++|
T Consensus        79 ~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~S  118 (321)
T 3vps_A           79 HKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGS  118 (321)
T ss_dssp             CCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             cCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEec
Confidence            64210  011122345 999999999999988744 444443

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.44  E-value=0.0012  Score=59.26  Aligned_cols=116  Identities=15%  Similarity=0.112  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++...   ..+..+.. -+|   ..++++      
T Consensus         6 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (251)
T 1zk4_A            6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999887  899999875  22222233221   12222211 122   222232      


Q ss_pred             -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 018433          112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                       ..|+||..+|.....   ..+   ....+..|+...    +.+.+.+++....+.|+++|...
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  144 (251)
T 1zk4_A           81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIE  144 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCch
Confidence             589999999864321   112   234566777644    44444444332226777776543

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.44  E-value=0.0011  Score=60.07  Aligned_cols=115  Identities=17%  Similarity=0.226  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC-------C
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-------G  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-------~  112 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.......++....  ..+..+.. -+|   .+++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHG--VKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTS--CCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999987  899999876422333443321  22332211 122   233444       8


Q ss_pred             CcEEEEcCCCCCCCC---Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 018433          113 MDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       113 aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      .|++|..||......   .+   ....+..|+.    ..+.+.+.+++. ..+.||++|..
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~  139 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR-NWGRIINIASV  139 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcCc
Confidence            999999998653211   11   2345566766    555666666554 34677777654

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=97.43  E-value=0.0005  Score=64.96  Aligned_cols=97  Identities=16%  Similarity=0.200  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhCC---
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTG---  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~-----~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~~---  112 (356)
                      |||.|+||+|++|++++..|+..+     .  +|+.+|++.....   +.+    ..+..+.+ -+   ++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HED----NPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCS----SCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---ccc----CceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999998877     5  8999998762111   111    12222211 12   34566788   


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP  153 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p  153 (356)
                      +|+||.+|+...   .+..+....|+.....+++.+.+.++
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~  110 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNCP  110 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            999999998652   34566778999999999999998754

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.43  E-value=0.0018  Score=58.22  Aligned_cols=152  Identities=14%  Similarity=0.176  Sum_probs=86.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|.   ++.+       
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999987  899999976  333333443321  23332211 1232   2222       


Q ss_pred             CCCcEEEEcCCCCC--C----CCCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHH
Q 018433          111 TGMDLVIIPAGVPR--K----PGMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       111 ~~aDiVIi~ag~~~--~----~g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~  177 (356)
                      ...|++|..||...  .    ...+   ....+..|+..    .+.+.+.+.+. ..+.|+++|.....           
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~-----------  152 (253)
T 3qiv_A           85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR-GGGAIVNQSSTAAW-----------  152 (253)
T ss_dssp             SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECC---------------
T ss_pred             CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCEEEEECCcccc-----------
Confidence            28899999998631  1    1112   23456677766    55555555554 35677777654321           


Q ss_pred             hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          178 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       178 ~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                          +....++.+......+-+.++..++  +..|++..+
T Consensus       153 ----~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  186 (253)
T 3qiv_A          153 ----LYSNYYGLAKVGINGLTQQLSRELG--GRNIRINAI  186 (253)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             ----CCCchhHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence                1223466665555567777888874  344544333

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.42  E-value=0.00089  Score=61.85  Aligned_cols=172  Identities=13%  Similarity=0.110  Sum_probs=85.8

Q ss_pred             hhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CC
Q 018433           27 ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQ  103 (356)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t  103 (356)
                      .+.+|++.........+.+.+.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++..... ..+..+. .-
T Consensus        16 ~~l~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv   92 (281)
T 4dry_A           16 ENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDV   92 (281)
T ss_dssp             ------------------CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCT
T ss_pred             ceEEEeccccccCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCC
Confidence            4666665444433334556899999999999999999999987  899999976  2333333332111 1112211 11


Q ss_pred             CCh---hhhh-------CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHH----HHHHHHHHHHhC-CCcEEEEec
Q 018433          104 PQL---ENAL-------TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGI----VRTLCEGIAKCC-PNATVNLIS  161 (356)
Q Consensus       104 ~d~---~~al-------~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~-p~a~viv~t  161 (356)
                      +|.   ++++       ...|++|..||.....+    .+   ....+..|+..    .+...+.+.+.. ..+.||++|
T Consensus        93 ~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~is  172 (281)
T 4dry_A           93 GDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNG  172 (281)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence            222   2222       36799999998743211    12   22345566554    455555555544 257888876


Q ss_pred             CCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCccc
Q 018433          162 NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  215 (356)
Q Consensus       162 NPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~  215 (356)
                      .-....            +.+..-.++.+......+-+.+|..++  +..|++.
T Consensus       173 S~~~~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn  212 (281)
T 4dry_A          173 SISAQT------------PRPNSAPYTATKHAITGLTKSTALDGR--MHDIACG  212 (281)
T ss_dssp             CGGGTC------------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             CHHhCC------------CCCCChhHHHHHHHHHHHHHHHHHHhc--ccCeEEE
Confidence            533211            222223334433333445666777663  3344433

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.42  E-value=0.00085  Score=61.78  Aligned_cols=132  Identities=17%  Similarity=0.181  Sum_probs=75.6

Q ss_pred             hhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-
Q 018433           26 EENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-  102 (356)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-  102 (356)
                      +++.+|++......-..+.+++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++....  ..+..+.. 
T Consensus        15 ~~~~~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D   90 (275)
T 4imr_A           15 TENLYFQSMRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG--GTAQELAGD   90 (275)
T ss_dssp             ---CCSCTTSHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECC
T ss_pred             ccccccccccccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEec
Confidence            44455544433332233456899999999999999999999987  899999987  344444454322  22222211 


Q ss_pred             CCC---hhhhh------CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecC
Q 018433          103 QPQ---LENAL------TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  162 (356)
Q Consensus       103 t~d---~~~al------~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tN  162 (356)
                      -+|   .++.+      ...|++|..||......   .+   ....+..|+.....+.+    .+.+. ..+.||++|.
T Consensus        91 v~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS  168 (275)
T 4imr_A           91 LSEAGAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSIGS  168 (275)
T ss_dssp             TTSTTHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECC
Confidence            112   22222      27899999998643221   12   22345566554444444    44443 4577777765

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.42  E-value=0.00032  Score=67.63  Aligned_cols=94  Identities=13%  Similarity=0.223  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCC---cEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM---DLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~a---DiVIi~  119 (356)
                      +.|||+|||. |.+|..++..|+..+.  +|+++|+++.  .+.++....    +.   ..++++++++++   |+||++
T Consensus        21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~--~~~~l~~~g----~~---~~~s~~e~~~~a~~~DvVi~~   88 (358)
T 4e21_A           21 QSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVN--AVQALEREG----IA---GARSIEEFCAKLVKPRVVWLM   88 (358)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CB---CCSSHHHHHHHSCSSCEEEEC
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHH--HHHHHHHCC----CE---EeCCHHHHHhcCCCCCEEEEe
Confidence            4579999999 9999999999999987  9999998752  222333321    11   235677888888   999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  164 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv  164 (356)
                      ...+                .+.++++.+.... |+.+||..||-.
T Consensus        89 vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           89 VPAA----------------VVDSMLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             SCGG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred             CCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            5211                1334445666555 677777776543

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.42  E-value=0.00015  Score=67.20  Aligned_cols=64  Identities=16%  Similarity=0.278  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +|||+|||+ |.+|+.++..|...+.  +|+++| ++....  .+....    +.   ..+++.++++++|+||++.
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g----~~---~~~~~~~~~~~~D~vi~~v   66 (295)
T 1yb4_A            3 AMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLG----AV---NVETARQVTEFADIIFIMV   66 (295)
T ss_dssp             -CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTT----CB---CCSSHHHHHHTCSEEEECC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcC----Cc---ccCCHHHHHhcCCEEEEEC
Confidence            479999999 9999999999998887  899999 662111  122211    11   1356778899999999985

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.40  E-value=0.00024  Score=67.87  Aligned_cols=116  Identities=11%  Similarity=0.029  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHHHHhcCC---CCCeEEEEeC-CCC---hhhhhCC--
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD---TGAVVRGFLG-QPQ---LENALTG--  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---g~~~dl~~~~---~~~~v~~~~~-t~d---~~~al~~--  112 (356)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++...   ....++....   ....+..+.. -+|   +.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            4899999999999999999999886  99999986511   1111111000   0122333221 122   3345554  


Q ss_pred             CcEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEecC
Q 018433          113 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISN  162 (356)
Q Consensus       113 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~viv~tN  162 (356)
                      .|+||.+||.....  ..+....+..|+.....+++.+.+...  ...||++|.
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS  156 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAST  156 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecc
Confidence            59999999864211  012345667899999999999887653  256666653

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.40  E-value=0.00018  Score=66.23  Aligned_cols=169  Identities=12%  Similarity=0.032  Sum_probs=85.6

Q ss_pred             ccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC
Q 018433           17 HLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG   94 (356)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~   94 (356)
                      .+|++++.+..|..+.           .+.+.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++..    
T Consensus        12 ~~~~~~~~~~~m~~~~-----------~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~----   74 (272)
T 4dyv_A           12 DLGTENLYFQSMSKTG-----------KKIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD----   74 (272)
T ss_dssp             ---------------------------CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS----
T ss_pred             cCCcceeehhhhcCCC-----------CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC----
Confidence            3567777776665321           23688999999999999999999987  899999876  2333333321    


Q ss_pred             CeEEEEe-CCCC---hhhhh-------CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHH----HHHHHHHHHHhC
Q 018433           95 AVVRGFL-GQPQ---LENAL-------TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGI----VRTLCEGIAKCC  152 (356)
Q Consensus        95 ~~v~~~~-~t~d---~~~al-------~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~  152 (356)
                       .+..+. .-+|   .++++       ...|++|..||.....+    .+   ....+..|+..    .+...+.+.+..
T Consensus        75 -~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~  153 (272)
T 4dyv_A           75 -DALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQE  153 (272)
T ss_dssp             -CCEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSS
T ss_pred             -CeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCC
Confidence             111111 1122   22223       38999999999743211    12   23445666655    455555555544


Q ss_pred             C-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          153 P-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       153 p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      + .+.||++|.-....            +.+..-.++.+......+-+.++..++  +..|++..+
T Consensus       154 ~~~g~IV~isS~~~~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  205 (272)
T 4dyv_A          154 PRGGRIINNGSISATS------------PRPYSAPYTATKHAITGLTKSTSLDGR--VHDIACGQI  205 (272)
T ss_dssp             SCCEEEEEECCSSTTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCcEEEEECchhhcC------------CCCCchHHHHHHHHHHHHHHHHHHHhC--ccCEEEEEE
Confidence            2 57888876544322            222222333333333445566777663  334444333

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.40  E-value=0.0005  Score=61.52  Aligned_cols=117  Identities=17%  Similarity=0.211  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al~-----  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++ +.+.  ......++....  ..+..+.. -+|.   +++++     
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMDA   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999987  89998 4444  222223333221  22332211 1232   22232     


Q ss_pred             --CCcEEEEcCCCCCCC------CCcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 018433          112 --GMDLVIIPAGVPRKP------GMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  164 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv  164 (356)
                        +.|+||..+|.....      .......+..|+.....+.+.+.+.   ...+.||++|...
T Consensus        81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  144 (247)
T 2hq1_A           81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIA  144 (247)
T ss_dssp             HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChh
Confidence              799999999864311      1122345666776655555544432   2356777776653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.39  E-value=0.00046  Score=64.04  Aligned_cols=66  Identities=14%  Similarity=0.346  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ++|||+|||+ |.+|..++..|...+.  +|+++|+++.  ....+.+..    +..   .++++++++++|+||++.
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~--~~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEA--NVAAVVAQG----AQA---CENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHHHCC----Cee---cCCHHHHHhCCCEEEEEC
Confidence            3579999999 9999999999988887  8999998752  122233221    222   356778889999999985

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.38  E-value=0.0005  Score=67.05  Aligned_cols=114  Identities=11%  Similarity=0.065  Sum_probs=70.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h---HHHHHhcC-------CCCCeEEEEeC----CCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G---VTADISHM-------DTGAVVRGFLG----QPQ  105 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g---~~~dl~~~-------~~~~~v~~~~~----t~d  105 (356)
                      .++++|.|+||+|++|+.++..|...+.  +|++++++...  +   ....+...       .....+..+.+    ..+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            4457999999999999999999976665  99999987621  1   11111110       00112222211    112


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +. ++.++|+||.+|+.... ..........|+.....+++.+.+  ....++++|
T Consensus       145 l~-~~~~~d~Vih~A~~~~~-~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~S  196 (427)
T 4f6c_A          145 VV-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVS  196 (427)
T ss_dssp             CC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH--TTCEEEEEE
T ss_pred             CC-CcCCCCEEEECCcccCC-CCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEEC
Confidence            22 57899999999986532 233455678899999999999988  344555554

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=97.38  E-value=0.00029  Score=64.84  Aligned_cols=160  Identities=13%  Similarity=0.059  Sum_probs=88.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC--CcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~--aDiVIi~  119 (356)
                      .++|||.|+||+|++|++++..|+..+..........   .....|+.+            ..++.+++++  +|+||.+
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~---~~~~~D~~d------------~~~~~~~~~~~~~d~Vih~   68 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFV---SSKDADLTD------------TAQTRALFEKVQPTHVIHL   68 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEEC---CTTTCCTTS------------HHHHHHHHHHSCCSEEEEC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCCccccccccc---CceecccCC------------HHHHHHHHhhcCCCEEEEC
Confidence            4578999999999999999999998875100000000   000111111            1234456666  9999999


Q ss_pred             CCCCCC---CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC------C-ccHHHHHHHHHHhCCCCCCC-EEE
Q 018433          120 AGVPRK---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------N-STVPIAAEVFKKAGTYDPKK-LLG  188 (356)
Q Consensus       120 ag~~~~---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv------~-~~t~~~~~~~~~~~~~~~~k-viG  188 (356)
                      |+....   ......+.+..|+.....+++.+.+.... .+|.+|.-.      + .++    |.........+.. .+|
T Consensus        69 A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~----E~~~~~~~~~p~~~~Y~  143 (319)
T 4b8w_A           69 AAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLSTCIFPDKTTYPID----ETMIHNGPPHNSNFGYS  143 (319)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGSCSSCCSSBC----GGGGGBSCCCSSSHHHH
T ss_pred             ceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcchhhcCCCCCCCcc----ccccccCCCCCCcchHH
Confidence            986421   11334567889999999999999887644 455444211      0 110    0000000111112 244


Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      .+.....++-..+++..|++..-++ ..++|...
T Consensus       144 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~  177 (319)
T 4b8w_A          144 YAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHD  177 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCC
Confidence            4444445555556666776655453 45677543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.37  E-value=0.0018  Score=58.83  Aligned_cols=158  Identities=10%  Similarity=0.058  Sum_probs=90.9

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC-CC---Chhhhh------
Q 018433           44 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QP---QLENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al------  110 (356)
                      .+++.|+||+|.  +|.+++..|+..|.  +|++.|++. ......++........+..+.. -+   +.++++      
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            358999999888  99999999999987  899999876 2233333332211112222211 12   222223      


Q ss_pred             -CCCcEEEEcCCCCCC-----C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHh
Q 018433          111 -TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA  178 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~  178 (356)
                       ...|++|..+|....     +  ..+   ....+..|+.....+.+.+...- +.+.||++|......           
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------  153 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL-----------  153 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----------
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc-----------
Confidence             367999999987531     1  112   23456678777777877777664 457788876543221           


Q ss_pred             CCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          179 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       179 ~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                       +.|..-.++.+......+-+.++..+.  +..|++..+
T Consensus       154 -~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  189 (266)
T 3oig_A          154 -VMPNYNVMGVAKASLDASVKYLAADLG--KENIRVNSI  189 (266)
T ss_dssp             -CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -cCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence             233222334433333446666777663  334544433

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.37  E-value=0.00037  Score=65.48  Aligned_cols=119  Identities=10%  Similarity=0.109  Sum_probs=70.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----CCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      +|||+|||+ |.+|+.++..|. .+.  +|.++++++....  .+....    ..........+.+ .++..++|+||++
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~~--~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQAA--AIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHH--HHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHHH--HHHhCCceEecCCCeeccccccc-ccccCCCCEEEEE
Confidence            379999999 999999999999 776  9999998751111  121110    0000000000111 2457899999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhh
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD  193 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld  193 (356)
                      .-    +..            +.++++.+....++. |+.+.|-++..     +.+.+.  +|.++|++- +...
T Consensus        75 vK----~~~------------~~~~l~~l~~~~~~~-ivs~~nGi~~~-----e~l~~~--~~~~~vl~g~~~~~  125 (307)
T 3ego_A           75 VK----QHQ------------LQSVFSSLERIGKTN-ILFLQNGMGHI-----HDLKDW--HVGHSIYVGIVEHG  125 (307)
T ss_dssp             CC----GGG------------HHHHHHHTTSSCCCE-EEECCSSSHHH-----HHHHTC--CCSCEEEEEEECCE
T ss_pred             eC----HHH------------HHHHHHHhhcCCCCe-EEEecCCccHH-----HHHHHh--CCCCcEEEEEEeec
Confidence            52    111            334455665555666 77788988753     223333  677888765 5444

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.37  E-value=0.0015  Score=60.07  Aligned_cols=132  Identities=14%  Similarity=0.105  Sum_probs=77.3

Q ss_pred             ccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC
Q 018433           17 HLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG   94 (356)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~   94 (356)
                      |--||--+..+|.-           .+.+++.|+||+|.+|..++..|+..|.  +|+++|++.  ......++....  
T Consensus         6 ~~~~~~~~~~~m~~-----------l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--   70 (277)
T 2rhc_B            6 HSSGLVPRGSHMAT-----------QDSEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--   70 (277)
T ss_dssp             ----CCCTTTTTCC-----------TTSCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--
T ss_pred             cCCCCCcccccccc-----------CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--
Confidence            44566666666531           1234899999999999999999999987  899999876  222233343221  


Q ss_pred             CeEEEEeC-CCCh---hhhh-------CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh-----C
Q 018433           95 AVVRGFLG-QPQL---ENAL-------TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-----C  152 (356)
Q Consensus        95 ~~v~~~~~-t~d~---~~al-------~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-----~  152 (356)
                      ..+..+.. -+|.   ++++       ...|++|..||......   .+   ....+..|+.....+.+.+...     .
T Consensus        71 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~  150 (277)
T 2rhc_B           71 VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLER  150 (277)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHH
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhc
Confidence            12222211 1222   2223       37899999998753211   11   2345667777766666665443     1


Q ss_pred             CCcEEEEecCC
Q 018433          153 PNATVNLISNP  163 (356)
Q Consensus       153 p~a~viv~tNP  163 (356)
                      ..+.||++|..
T Consensus       151 ~~g~iv~isS~  161 (277)
T 2rhc_B          151 GTGRIVNIAST  161 (277)
T ss_dssp             TEEEEEEECCG
T ss_pred             CCeEEEEECcc
Confidence            34677777654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.36  E-value=0.0026  Score=57.87  Aligned_cols=149  Identities=19%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++.... ...+..+.. -+|.   ++++       
T Consensus        10 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A           10 GRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999988  999999976  333444554432 123333221 1232   2222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ...|++|..||.....   ..+   ....+..|+.....+.+.+..+   ...+.||++|.-....           .+.
T Consensus        87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------~~~  155 (262)
T 3pk0_A           87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI-----------TGY  155 (262)
T ss_dssp             SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT-----------BCC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc-----------CCC
Confidence            2799999999864321   122   2334566665555544444333   2356677776544321           123


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhC
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                      |..-.++.+......+-+.+|..++
T Consensus       156 ~~~~~Y~asK~a~~~l~~~la~e~~  180 (262)
T 3pk0_A          156 PGWSHYGATKAAQLGFMRTAAIELA  180 (262)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHH
Confidence            3323334433333456667777763

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.36  E-value=0.00022  Score=65.86  Aligned_cols=107  Identities=14%  Similarity=0.022  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe--CCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~a  120 (356)
                      +++|.|+||+|++|++++..|+..+ .  +|+.++++.......++....  ..+....  ...++.++++++|+||.++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~--~~~~~~D~~d~~~l~~~~~~~d~vi~~a   80 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQG--AEVVQGDQDDQVIMELALNGAYATFIVT   80 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCC--CEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence            3689999999999999999998876 5  899999876222222333211  1111110  0123556889999999998


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +.....      ....|....+.+++.+++.... .|+..|
T Consensus        81 ~~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           81 NYWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             CHHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             CCCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            642111      1245677788888888876533 444443

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.36  E-value=4.6e-05  Score=70.11  Aligned_cols=105  Identities=11%  Similarity=0.083  Sum_probs=65.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCC-CcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTG-MDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~-aDiVIi~a  120 (356)
                      ++|||.|+|+ |++|++++..|+..|.  +|+.++++...     +.. . ...+.. .....++.+++++ +|+||.++
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~~-~-~~~~~~Dl~d~~~~~~~~~~~~d~vih~a   71 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MPA-G-VQTLIADVTRPDTLASIVHLRPEILVYCV   71 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CCT-T-CCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----ccc-C-CceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence            3579999996 9999999999999887  89999987521     000 0 011111 0011234456677 99999998


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +...   .+..+....|+.....+++.+.+.... .+|.+|
T Consensus        72 ~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~S  108 (286)
T 3gpi_A           72 AASE---YSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVS  108 (286)
T ss_dssp             HHHH---HC-----CCSHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred             CCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEc
Confidence            6421   122334567888888999888864433 455544

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.36  E-value=0.00022  Score=65.19  Aligned_cols=103  Identities=12%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |||.|+||+|++|++++..|+..  +.  +|+.++++.....  ++..... ..+.. .....++.++++++|+||.+++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~~-~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQGV-EVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTTC-EEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcCC-eEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            58999999999999999999887  65  8999998762211  1221110 01111 0001235577899999999987


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ..  ++  .    ..|+.....+++.+.+.... .++.+|
T Consensus        76 ~~--~~--~----~~n~~~~~~l~~a~~~~~~~-~~v~~S  106 (287)
T 2jl1_A           76 PH--YD--N----TLLIVQHANVVKAARDAGVK-HIAYTG  106 (287)
T ss_dssp             CC--SC--H----HHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CC--cC--c----hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            53  11  1    35788888888888876533 455554

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.35  E-value=0.00056  Score=61.83  Aligned_cols=115  Identities=15%  Similarity=0.112  Sum_probs=74.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-----  111 (356)
                      .++|.|+||+|.+|++++..|+. .|.  +|+++|++.  ......++....  ..+..+. .-+|   ..++++     
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999998 787  899999875  233333443321  1222211 1122   223333     


Q ss_pred             --CCcEEEEcCCCCCCCC------CcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          112 --GMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~g------~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                        ..|+||..||......      ......+..|+.....+.+.+.+.. +.+.||++|.
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence              7899999998653221      1123456788888888888887664 3457777765

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.35  E-value=0.00029  Score=64.13  Aligned_cols=144  Identities=16%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++..     .+..+. .-+|   .+++++      
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  899999876  2223333321     111111 1122   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                       ..|++|..||......   .+   ....+..|+...    +...+.+.+..+.+.||++|......            +
T Consensus        81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~  148 (259)
T 4e6p_A           81 GGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR------------G  148 (259)
T ss_dssp             SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------C
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc------------C
Confidence             8999999998743211   11   233455666544    44444555544567888876543221            2


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhC
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                      .|..-.++.+......+-+.++..++
T Consensus       149 ~~~~~~Y~asK~a~~~~~~~la~e~~  174 (259)
T 4e6p_A          149 EALVAIYCATKAAVISLTQSAGLDLI  174 (259)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhh
Confidence            22222233333333445666777663

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.34  E-value=0.00066  Score=67.92  Aligned_cols=111  Identities=7%  Similarity=0.097  Sum_probs=70.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC---CcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~  119 (356)
                      .++||+|||+ |.+|.+++..|+..|.  +|.++|+++.  .+.++........+..   ++++++++++   +|+||++
T Consensus        14 ~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~--~~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~   85 (480)
T 2zyd_A           14 SKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSRE--KTEEVIAENPGKKLVP---YYTVKEFVESLETPRRILLM   85 (480)
T ss_dssp             -CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHH--HHHHHHHHSTTSCEEE---CSSHHHHHHTBCSSCEEEEC
T ss_pred             CCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHH--HHHHHHhhCCCCCeEE---eCCHHHHHhCCCCCCEEEEE
Confidence            4568999999 9999999999999887  8999998752  1122221100112332   3577777776   9999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHH
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK  176 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~  176 (356)
                      .-.    +.           .+.++++.+..+. |+.+||..+|-....+.-+.+.+.
T Consensus        86 Vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~  128 (480)
T 2zyd_A           86 VKA----GA-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELS  128 (480)
T ss_dssp             SCS----SS-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHH
T ss_pred             CCC----HH-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            532    11           1334445565555 577888888876544433334443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.34  E-value=0.00059  Score=62.77  Aligned_cols=91  Identities=11%  Similarity=0.023  Sum_probs=58.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||+|||+ |.+|..++..|.. +.  +|+++|++.....  .+....    +...   + +.++++++|+||++...+ 
T Consensus         2 ~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~--~~~~~g----~~~~---~-~~~~~~~~D~vi~~v~~~-   66 (289)
T 2cvz_A            2 EKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKAL--RHQEEF----GSEA---V-PLERVAEARVIFTCLPTT-   66 (289)
T ss_dssp             CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHH--HHHHHH----CCEE---C-CGGGGGGCSEEEECCSSH-
T ss_pred             CeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHHCC----Cccc---C-HHHHHhCCCEEEEeCCCh-
Confidence            68999999 9999999999988 76  8999999762111  111111    1111   2 457789999999985321 


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  164 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv  164 (356)
                                    ..+.++.+.+.+.. |+..|+..+|..
T Consensus        67 --------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 --------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             --------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                          01223345554444 567777777754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.34  E-value=0.00037  Score=65.37  Aligned_cols=65  Identities=12%  Similarity=0.111  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .|||+|||+ |.+|+.++..|...+.  +|.++|+++....  .+...  .  +..   .+++.++++++|+||++.
T Consensus        30 ~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~--g--~~~---~~~~~~~~~~~DvVi~av   94 (316)
T 2uyy_A           30 DKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQE--G--ARL---GRTPAEVVSTCDITFACV   94 (316)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHT--T--CEE---CSCHHHHHHHCSEEEECC
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHc--C--CEE---cCCHHHHHhcCCEEEEeC
Confidence            579999999 9999999999998887  8999998762211  12221  1  122   246678889999999985

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.32  E-value=0.0014  Score=59.04  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .+++++      
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  899999875  222333343221  22333211 123   223333      


Q ss_pred             -CCcEEEEcCCCCC--CC--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          112 -GMDLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       112 -~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                       ..|+||..+|...  .+  ..+   ....+..|+.....+.+.+..+   ...+.|+++|..
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  151 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSM  151 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecc
Confidence             7899999998643  11  122   2344566766665555555432   235677777643

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.32  E-value=0.0015  Score=59.85  Aligned_cols=170  Identities=15%  Similarity=0.106  Sum_probs=89.3

Q ss_pred             cCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCC
Q 018433           18 LYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTG   94 (356)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~   94 (356)
                      .|+||+-|..|.+            +.+.+.|+||+|.+|.+++..|+..|.  .+++.+...   ......++....  
T Consensus        13 ~~~~~~~~~~m~~------------~~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--   76 (267)
T 3u5t_A           13 LGTENLYFQSMME------------TNKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--   76 (267)
T ss_dssp             --------------------------CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--
T ss_pred             ccccccccccccc------------CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--
Confidence            4667777766531            123789999999999999999999887  888876544   223333333322  


Q ss_pred             CeEEEEe-CCCCh---hhhh-------CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcE
Q 018433           95 AVVRGFL-GQPQL---ENAL-------TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNAT  156 (356)
Q Consensus        95 ~~v~~~~-~t~d~---~~al-------~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~  156 (356)
                      ..+..+. .-+|.   ++++       ...|++|..||......   .+   ....+..|+.....+.+.+...- ..+.
T Consensus        77 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~  156 (267)
T 3u5t_A           77 GKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGR  156 (267)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCe
Confidence            2222221 11232   2222       37899999998743211   11   23455678877777776665543 3567


Q ss_pred             EEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          157 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       157 viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ||++|.....            .+.|..-.++.+......+-+.++..++  +..|++..+
T Consensus       157 iv~isS~~~~------------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (267)
T 3u5t_A          157 IINMSTSQVG------------LLHPSYGIYAAAKAGVEAMTHVLSKELR--GRDITVNAV  203 (267)
T ss_dssp             EEEECCTHHH------------HCCTTCHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEE
T ss_pred             EEEEeChhhc------------cCCCCchHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEE
Confidence            7777643210            1233333344444344456677777774  455654444

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.32  E-value=0.0014  Score=56.32  Aligned_cols=137  Identities=14%  Similarity=0.087  Sum_probs=79.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCC---hhhh--hCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA--LTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a--l~~aDiV  116 (356)
                      ..+||.|+|+ |.+|..++..|... +.  +++++|.++..  ...+..... ..+..  ..++   +.++  +.++|+|
T Consensus        38 ~~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~--~~~~~~~g~-~~~~g--d~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           38 GHAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEA--AQQHRSEGR-NVISG--DATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TTCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHH--HHHHHHTTC-CEEEC--CTTCHHHHHTBCSCCCCCEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHH--HHHHHHCCC-CEEEc--CCCCHHHHHhccCCCCCCEE
Confidence            3569999998 99999999999887 87  89999997621  112222211 11211  1122   3344  7899999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHH
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  196 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R  196 (356)
                      |++.+.+           ..|.    .++..+++.+|+..++..+|-.+..     +.+.+. |  ...++.-...-..+
T Consensus       110 i~~~~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~~~-----~~l~~~-G--~~~vi~p~~~~a~~  166 (183)
T 3c85_A          110 LLAMPHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPDQL-----EGLLES-G--VDAAFNIYSEAGSG  166 (183)
T ss_dssp             EECCSSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHHHH-----HHHHHH-T--CSEEEEHHHHHHHH
T ss_pred             EEeCCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHc-C--CCEEEchHHHHHHH
Confidence            9975421           2333    3344566677888777666432221     233443 3  34565544444445


Q ss_pred             HHHHHHHHhCCCCC
Q 018433          197 ANTFVAEVLGLDPR  210 (356)
Q Consensus       197 ~~~~la~~l~v~~~  210 (356)
                      +-..+.+.++.+..
T Consensus       167 l~~~~~~~~~~~~~  180 (183)
T 3c85_A          167 FARHVCKQLEPQFT  180 (183)
T ss_dssp             HHHHHHHHHCCCCC
T ss_pred             HHHHHHHhcCCccc
Confidence            55555566665543

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.30  E-value=0.00011  Score=66.75  Aligned_cols=150  Identities=13%  Similarity=0.061  Sum_probs=85.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhh-------CCCcEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL-------TGMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~aDiV  116 (356)
                      ++|.|+||+|.+|.+++..|+..|.  +|+++|++.....     ..    .+.. .....+.++++       ...|++
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~-----~~----~~~~d~~d~~~v~~~~~~~~~~~g~iD~l   91 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNA-----DH----SFTIKDSGEEEIKSVIEKINSKSIKVDTF   91 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTS-----SE----EEECSCSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccc-----cc----ceEEEeCCHHHHHHHHHHHHHHcCCCCEE
Confidence            3799999999999999999999987  8999999762110     00    0110 00011222222       356999


Q ss_pred             EEcCCCCCCC----CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          117 IIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       117 Ii~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      |..||.....    ..+   ....+..|+.....+.+.+...- +.+.||++|......            +.+..-.++
T Consensus        92 i~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~~Y~  159 (251)
T 3orf_A           92 VCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN------------RTSGMIAYG  159 (251)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CCTTBHHHH
T ss_pred             EECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc------------CCCCCchhH
Confidence            9999864221    111   23456678887777777776654 356777776543211            233222333


Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .+......+-+.++..++..+..|++.++
T Consensus       160 ~sKaa~~~~~~~la~e~~~~~~gi~v~~v  188 (251)
T 3orf_A          160 ATKAATHHIIKDLASENGGLPAGSTSLGI  188 (251)
T ss_dssp             HHHHHHHHHHHHHTSTTSSSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence            33322333445555554433556655544

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.30  E-value=0.002  Score=57.56  Aligned_cols=115  Identities=14%  Similarity=0.137  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC-------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-------  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-------  111 (356)
                      ++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+|   .+++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999987  899999875  222223331111 122333211 122   223333       


Q ss_pred             CCcEEEEcCCCCCCCC------Cc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKPG------MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g------~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      +.|+||..+|......      .+   ....+..|+...    +.+.+.+.+. ..+.||++|..
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  143 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQ-GAGVIVNIASV  143 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEECCh
Confidence            7899999998643211      11   233455666544    4444444443 34667777643

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.29  E-value=0.0027  Score=57.89  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.+...   ......++...  ...+..+.. -+|   .++++       
T Consensus        27 k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           27 PVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            3789999999999999999999987  787764433   22233333332  123333211 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHH----HHHh--CCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEG----IAKC--CPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~----i~~~--~p~a~viv~tNP  163 (356)
                      ...|+||..||....++    .+   -...+..|+.....+.+.    +.+.  ...+.||++|..
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~  168 (272)
T 4e3z_A          103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSM  168 (272)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcch
Confidence            37899999998754322    12   234456666555444444    4332  235677777653

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.28  E-value=0.00097  Score=64.79  Aligned_cols=97  Identities=14%  Similarity=0.130  Sum_probs=58.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCc-hhHHHH-HhcCC------CCCe--EE--E-E-eCCCChhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTAD-ISHMD------TGAV--VR--G-F-LGQPQLEN  108 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~~-~g~~~d-l~~~~------~~~~--v~--~-~-~~t~d~~~  108 (356)
                      +|||+|||+ |.+|..++..|+. .|.  +|.++|.... ...... +....      ....  +.  . . ..++|+++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEI   78 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHH
Confidence            379999999 9999999999987 476  9999993221 111222 22110      0001  11  0 0 02357778


Q ss_pred             hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE
Q 018433          109 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNL  159 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv  159 (356)
                      ++++||+||++....                ...++++.+..+. |+.+|+.
T Consensus        79 a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           79 AISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             HhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            899999999985321                0245566666655 4655444

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.28  E-value=0.0003  Score=65.56  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c---hhHHH---HHhcCCCCCeEEEEe--CCCChhhhhCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVTA---DISHMDTGAVVRGFL--GQPQLENALTG  112 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~---~g~~~---dl~~~~~~~~v~~~~--~t~d~~~al~~  112 (356)
                      ..+|+|.|+||+|++|++++..|+..+.  +|++++++. .   .....   ++...  ...+....  ...++.+++++
T Consensus         2 ~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~--~v~~v~~D~~d~~~l~~a~~~   77 (321)
T 3c1o_A            2 SHMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSM--GVTIIEGEMEEHEKMVSVLKQ   77 (321)
T ss_dssp             --CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHT--TCEEEECCTTCHHHHHHHHTT
T ss_pred             CcccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcC--CcEEEEecCCCHHHHHHHHcC
Confidence            3467899999999999999999998886  889999874 1   11111   12221  11111110  01235678899


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  152 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  152 (356)
                      +|+||.+++...             ....+.+++.+.+..
T Consensus        78 ~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (321)
T 3c1o_A           78 VDIVISALPFPM-------------ISSQIHIINAIKAAG  104 (321)
T ss_dssp             CSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             CCEEEECCCccc-------------hhhHHHHHHHHHHhC
Confidence            999999987532             222345666666654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.28  E-value=0.00045  Score=65.31  Aligned_cols=90  Identities=20%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHH---HHHhcCCCCCeEEEEeC----CCChhhhhC--C
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT---ADISHMDTGAVVRGFLG----QPQLENALT--G  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~---~dl~~~~~~~~v~~~~~----t~d~~~al~--~  112 (356)
                      ++||.|+||+|++|++++..|+..+.  +|++++++.  .....   .++...    .+..+.+    ..++.++++  +
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~----~v~~~~~Dl~d~~~l~~~~~~~~   83 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDK----GAIIVYGLINEQEAMEKILKEHE   83 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHT----TCEEEECCTTCHHHHHHHHHHTT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhC----CcEEEEeecCCHHHHHHHHhhCC
Confidence            46899999999999999999998886  899999865  11111   122221    1122111    123556778  9


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  152 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  152 (356)
                      +|+||.+++..             |+.....+++.+.+..
T Consensus        84 ~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           84 IDIVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             CCEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             CCEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            99999998752             5555678888888776

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.27  E-value=0.0002  Score=56.31  Aligned_cols=71  Identities=28%  Similarity=0.406  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC--CCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--QPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--t~d~~~al~~aDiVIi~a  120 (356)
                      ++||+|+|+ |.+|+.++..|...+ .  +++++|+++....  .+.+.  .........  ..++.++++++|+||.++
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~~--~~~~~--~~~~~~~d~~~~~~~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAALA--VLNRM--GVATKQVDAKDEAGLAKALGGFDAVISAA   77 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHHH--HHHTT--TCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHHH--HHHhC--CCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            468999999 999999999999887 4  8999998752111  12221  112211111  123456789999999997


Q ss_pred             C
Q 018433          121 G  121 (356)
Q Consensus       121 g  121 (356)
                      +
T Consensus        78 ~   78 (118)
T 3ic5_A           78 P   78 (118)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.27  E-value=0.00047  Score=63.60  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=84.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++.     ..+..+. .-+|   .++++       .
T Consensus        28 k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (277)
T 4dqx_A           28 RVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMVEKTTAKWG  100 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4899999999999999999999987  899999876  222222221     1111111 1122   22223       3


Q ss_pred             CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433          112 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYD  182 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~  182 (356)
                      ..|++|..||.....   ..+   ....+..|+.....+.+.+..+   ...+.||++|......            +.+
T Consensus       101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~  168 (277)
T 4dqx_A          101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS------------AIA  168 (277)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS------------CCT
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc------------CCC
Confidence            789999999864321   112   2344567776655555555432   2356778776533211            222


Q ss_pred             CCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          183 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       183 ~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ..-.++.+......+-+.++..++  +..|++..+
T Consensus       169 ~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  201 (277)
T 4dqx_A          169 DRTAYVASKGAISSLTRAMAMDHA--KEGIRVNAV  201 (277)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CChhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            222333333333345566777663  334544433

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.27  E-value=0.00032  Score=64.40  Aligned_cols=142  Identities=14%  Similarity=0.071  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|++++..|+..|.  +|++.|++.  ......++     ...+..+.. -+|   .+++++      
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLARY   77 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence            35799999999999999999999987  899999876  22222111     112222211 122   222333      


Q ss_pred             -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                       ..|+||..||.....   ..+   -...+..|+..    .+.+.+.+++.. .+.||++|......            +
T Consensus        78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~------------~  144 (281)
T 3m1a_A           78 GRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISSFGGQL------------S  144 (281)
T ss_dssp             SCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC------------C
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcCccccC------------C
Confidence             789999999864211   122   23456677776    666666666554 46677776533211            2


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHh
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVL  205 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l  205 (356)
                      .++.-.++.+......+-+.++..+
T Consensus       145 ~~~~~~Y~~sK~a~~~~~~~la~e~  169 (281)
T 3m1a_A          145 FAGFSAYSATKAALEQLSEGLADEV  169 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHh
Confidence            3333334444333344556666665

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.26  E-value=0.0014  Score=59.12  Aligned_cols=115  Identities=18%  Similarity=0.197  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|+ +.  ......++...  ...+..+.. -+|   ..++++     
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999887  8999998 43  22223333322  123332211 122   222333     


Q ss_pred             --CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecC
Q 018433          112 --GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISN  162 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tN  162 (356)
                        +.|+||..||.....   ..+   ....+..|+.....+.    +.+.+..+.+.||++|.
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              789999999865321   112   2334556665544444    44444333567777765

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.26  E-value=0.00063  Score=61.17  Aligned_cols=154  Identities=16%  Similarity=0.144  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh---CCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL---TGM  113 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al---~~a  113 (356)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++..     .+.... .-+|   ..+.+   ...
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~i   85 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTSNL   85 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcCCC
Confidence            446899999999999999999999987  899999876  2222223322     122111 1122   22223   378


Q ss_pred             cEEEEcCCCCCCC------CCcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          114 DLVIIPAGVPRKP------GMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       114 DiVIi~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      |++|..||.....      ..+....+..|+.....+.+.+...   ...+.||++|......            +.|..
T Consensus        86 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~  153 (249)
T 3f9i_A           86 DILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA------------GNPGQ  153 (249)
T ss_dssp             SEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--------------CCSCS
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc------------CCCCC
Confidence            9999999864311      1223445566665555554443322   2456788877654321            22333


Q ss_pred             CEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          185 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       185 kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      -.++.+......+-+.++..++  +..|++..+
T Consensus       154 ~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  184 (249)
T 3f9i_A          154 ANYCASKAGLIGMTKSLSYEVA--TRGITVNAV  184 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence            3334433333345566666653  334444433

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.26  E-value=0.0033  Score=57.73  Aligned_cols=172  Identities=15%  Similarity=0.182  Sum_probs=88.8

Q ss_pred             hccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC
Q 018433           16 AHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT   93 (356)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~   93 (356)
                      ..|.|-..+|..+  |+         .+.++|.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++.... 
T Consensus        12 ~~~~~~~~~~~~~--~~---------l~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-   77 (276)
T 2b4q_A           12 SGLVPRGSHMHPY--FS---------LAGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAYG-   77 (276)
T ss_dssp             ---------CCTT--TC---------CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTSS-
T ss_pred             CCccccccccccc--cC---------CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-
Confidence            3466666666543  21         2235899999999999999999999987  899999876  222333343211 


Q ss_pred             CCeEEEEeC-CCC---hhhhh-------CCCcEEEEcCCCCCCC---CC---cHHHHHHHHHHHH----HHHHHHHHHhC
Q 018433           94 GAVVRGFLG-QPQ---LENAL-------TGMDLVIIPAGVPRKP---GM---TRDDLFNINAGIV----RTLCEGIAKCC  152 (356)
Q Consensus        94 ~~~v~~~~~-t~d---~~~al-------~~aDiVIi~ag~~~~~---g~---~r~~~~~~N~~i~----~~i~~~i~~~~  152 (356)
                        .+..+.. -+|   .++++       ...|++|..||.....   ..   +....+..|+...    +.+.+.+++..
T Consensus        78 --~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~  155 (276)
T 2b4q_A           78 --DCQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSA  155 (276)
T ss_dssp             --CEEECCCCTTSHHHHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHC
T ss_pred             --ceEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc
Confidence              2222111 122   22222       3789999999864321   11   1234556666555    45555555443


Q ss_pred             C---CcEEEEecCCCCccHHHHHHHHHHhCCCCCCC-EEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          153 P---NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK-LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       153 p---~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k-viG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .   .+.||++|.-....            +.|..- .++.+......+-+.++..++  +..|++.++
T Consensus       156 ~~~~~g~iV~isS~~~~~------------~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gI~vn~v  210 (276)
T 2b4q_A          156 SAENPARVINIGSVAGIS------------AMGEQAYAYGPSKAALHQLSRMLAKELV--GEHINVNVI  210 (276)
T ss_dssp             CSSSCEEEEEECCGGGTC------------CCCCSCTTHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCCCEEEEECCHHHcC------------CCCCCccccHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            2   16777776533211            122222 334433333445566676663  334554444

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.26  E-value=0.0017  Score=60.52  Aligned_cols=117  Identities=16%  Similarity=0.127  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++....  ..+..+.. -+|   .+++++      
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999999987  899999986  333334444322  22222211 123   222232      


Q ss_pred             -CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCCC
Q 018433          112 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNPv  164 (356)
                       ..|++|..||......   .+   ....+..|+.....+    .+.+.+..+.+.|+++|...
T Consensus       107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  170 (301)
T 3tjr_A          107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFA  170 (301)
T ss_dssp             SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchh
Confidence             7899999998753211   11   233455565544444    44455555467888876543

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.25  E-value=0.0014  Score=59.56  Aligned_cols=115  Identities=17%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++...   ..+..+.. -+|   ++++++      
T Consensus        16 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   90 (278)
T 2bgk_A           16 DKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAKH   90 (278)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999875  22222233211   12222211 122   223333      


Q ss_pred             -CCcEEEEcCCCCCCC-----CC---cHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          112 -GMDLVIIPAGVPRKP-----GM---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~-----g~---~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                       +.|+||..+|.....     ..   ...+.+..|+.....+.+.+...   ...+.||++|..
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  154 (278)
T 2bgk_A           91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASI  154 (278)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCG
T ss_pred             CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeec
Confidence             799999999864211     11   12345667776666666665544   235677777643

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.25  E-value=0.0015  Score=59.17  Aligned_cols=116  Identities=16%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|   .++++       
T Consensus        14 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           14 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999987  899999875  222233343221  22332211 122   22223       


Q ss_pred             -CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 018433          111 -TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPV  164 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNPv  164 (356)
                       ...|+||..+|.....   ..+   ....+..|+.....+.+.+    ++. ..+.||++|...
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~  153 (266)
T 1xq1_A           90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFMSSIA  153 (266)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEEC---
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEccch
Confidence             5789999999864211   112   2345667776666665555    433 346677776543

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.25  E-value=0.00044  Score=66.15  Aligned_cols=116  Identities=15%  Similarity=0.001  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC-----CCC-eEEEEeC-CCC---hhhhhCC--
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGA-VVRGFLG-QPQ---LENALTG--  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~-----~~~-~v~~~~~-t~d---~~~al~~--  112 (356)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++........+.+..     ... .+..+.+ -+|   +.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            4899999999999999999999886  999999865110000011110     001 3333221 122   3345665  


Q ss_pred             CcEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEecC
Q 018433          113 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLISN  162 (356)
Q Consensus       113 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~tN  162 (356)
                      .|+||.+||.....  .......+..|+.....+++.+.+..    +.+.||++|.
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS  162 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGS  162 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCc
Confidence            59999999864211  01234556778888888888887754    2357776653

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.25  E-value=0.001  Score=69.29  Aligned_cols=115  Identities=18%  Similarity=0.063  Sum_probs=72.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhC--CCc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENALT--GMD  114 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~--~aD  114 (356)
                      +.++|.|+||+|++|++++..|+..+.  +|+++|++.  ......++.... ...+..+.+ -+   ++.++++  ++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence            346999999999999999999999887  999999865  211112221110 011111111 12   3345566  899


Q ss_pred             EEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          115 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       115 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +||.+|+.....  .....+.+..|+.....+++.+++.... .||++|
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~S  134 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSS  134 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            999999864211  0123456788999999999998877543 445544

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.25  E-value=0.0023  Score=57.73  Aligned_cols=112  Identities=16%  Similarity=0.125  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.     ..+..+.. -+|   .+++++      
T Consensus        12 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (265)
T 2o23_A           12 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGKF   84 (265)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45899999999999999999999987  899999976  222223331     12222111 122   233343      


Q ss_pred             -CCcEEEEcCCCCCCCC---------Cc---HHHHHHHHHHHHHHHHHHHHHhC---------CCcEEEEecC
Q 018433          112 -GMDLVIIPAGVPRKPG---------MT---RDDLFNINAGIVRTLCEGIAKCC---------PNATVNLISN  162 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g---------~~---r~~~~~~N~~i~~~i~~~i~~~~---------p~a~viv~tN  162 (356)
                       ..|+||..+|......         .+   ....+..|+.....+.+.+...-         ..+.||++|.
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS  157 (265)
T 2o23_A           85 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTAS  157 (265)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCC
Confidence             8999999998643211         11   23455667766666665555431         3466777654

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.24  E-value=0.0012  Score=58.95  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCC---hhhhhC---CCc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ---LENALT---GMD  114 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d---~~~al~---~aD  114 (356)
                      +.++|.|+||+|.+|++++..|+..|.  +|+++|++..  .....++   . ...+... .-+|   .+++++   ..|
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~---~-~~~~~~~-D~~~~~~~~~~~~~~~~id   78 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKEC---P-GIEPVCV-DLGDWDATEKALGGIGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHS---T-TCEEEEC-CTTCHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc---c-CCCcEEe-cCCCHHHHHHHHHHcCCCC
Confidence            346899999999999999999999987  8999998751  1111111   1 1111111 1122   333443   479


Q ss_pred             EEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecCC
Q 018433          115 LVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISNP  163 (356)
Q Consensus       115 iVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNP  163 (356)
                      +||..+|......   .+   ....+..|+.....+.+.+.+    ....+.||++|..
T Consensus        79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~  137 (244)
T 1cyd_A           79 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSM  137 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             EEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcch
Confidence            9999998643211   11   234556677665555554443    3335677777653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.24  E-value=0.00035  Score=57.82  Aligned_cols=94  Identities=13%  Similarity=0.154  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .+||+|||+ |.+|..++..|...+.  +++++|++.  ....+.++.     ..+..   .++++++++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~~---~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYVL---INDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEEE---CSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceEe---ecCHHHHhcCCCEEEEeCC
Confidence            469999999 9999999988887665  699999976  222232221     22222   3577888999999999876


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  167 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~  167 (356)
                      .+. +-...                  ....|..+++.+++|.++-
T Consensus        90 ~~~-~~~~~------------------~~l~~g~~vid~~~p~~~~  116 (144)
T 3oj0_A           90 SKT-PIVEE------------------RSLMPGKLFIDLGNPPNIE  116 (144)
T ss_dssp             CSS-CSBCG------------------GGCCTTCEEEECCSSCSBC
T ss_pred             CCC-cEeeH------------------HHcCCCCEEEEccCCccCC
Confidence            542 11110                  1123578899999998753

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.24  E-value=0.0052  Score=54.89  Aligned_cols=150  Identities=15%  Similarity=0.148  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC-CCCeEEEEeC-CCCh---hhh------
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFLG-QPQL---ENA------  109 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~-~~~~v~~~~~-t~d~---~~a------  109 (356)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++.... ....+..... .+|.   .+.      
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            445899999999999999999999987  899999986  233333343322 1111211110 0221   122      


Q ss_pred             -hCCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHh
Q 018433          110 -LTGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKA  178 (356)
Q Consensus       110 -l~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~  178 (356)
                       +...|++|..||.....+    .+   ....+..|+.....+.+.+..+   ...+.|+++|......           
T Consensus        91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-----------  159 (247)
T 3i1j_A           91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK-----------  159 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS-----------
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC-----------
Confidence             237899999998632211    11   2344566766665555555332   2456777776533221           


Q ss_pred             CCCCCCCEEEechhhHHHHHHHHHHHhC
Q 018433          179 GTYDPKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       179 ~~~~~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                       +.+..-.++.+......+-+.++..+.
T Consensus       160 -~~~~~~~Y~~sK~a~~~~~~~la~e~~  186 (247)
T 3i1j_A          160 -GRANWGAYGVSKFATEGLMQTLADELE  186 (247)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence             222222333333333345666777763

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.23  E-value=0.0034  Score=55.98  Aligned_cols=118  Identities=19%  Similarity=0.192  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhhC--
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT--  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~-----el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al~--  111 (356)
                      ++|.|+||+|.+|.+++..|+..|...     +|+++|++.  ......++...  ...+..+.. -+|.   +++++  
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            479999999999999999999876522     789999875  22233334322  123333221 1222   22232  


Q ss_pred             -----CCcEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 018433          112 -----GMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  164 (356)
Q Consensus       112 -----~aDiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv  164 (356)
                           ..|+||..||......   .   .....+..|+.....+.+.+..+   ...+.||++|...
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~  147 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVA  147 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecch
Confidence                 7999999998753211   1   12344566666555555554332   2456777776543

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.23  E-value=0.00019  Score=65.05  Aligned_cols=101  Identities=21%  Similarity=0.245  Sum_probs=68.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCC--CcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTG--MDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~--aDiVIi~ag  121 (356)
                      |||.|+||+|++|++++..|+. +.  +|+++|++....      .   .  +.. .....++.+++++  +|+||.++|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~------~---~--~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ------G---G--YKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT------T---C--EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC------C---C--ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            6899999999999999999984 54  899999875210      0   0  111 0001234455665  999999998


Q ss_pred             CCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          122 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       122 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .....  ..+..+.+..|+.....+++.+.+..  +.++++|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEe
Confidence            64311  12345567889999999999988754  3666664

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.23  E-value=0.0031  Score=52.63  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=46.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCC---hhhh-hCCCcEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVI  117 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVI  117 (356)
                      .+.++|+|+|+ |.+|..++..|...+.  +++++|.++...  ..+... ....+. ....++   +.++ ++++|+||
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~~-~g~~~~-~~d~~~~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNSE-FSGFTV-VGDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCTT-CCSEEE-ESCTTSHHHHHTTTGGGCSEEE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHhc-CCCcEE-EecCCCHHHHHHcCcccCCEEE
Confidence            34579999998 9999999999998887  999999876211  112201 111211 111122   2233 67899999


Q ss_pred             EcCC
Q 018433          118 IPAG  121 (356)
Q Consensus       118 i~ag  121 (356)
                      ++.+
T Consensus        90 ~~~~   93 (155)
T 2g1u_A           90 AFTN   93 (155)
T ss_dssp             ECSS
T ss_pred             EEeC
Confidence            9865

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.23  E-value=0.00076  Score=66.18  Aligned_cols=138  Identities=20%  Similarity=0.258  Sum_probs=84.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCC---hhhh-hCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi  118 (356)
                      +.++|.|+|. |.+|..++..|...+.  +++++|.++.  .+..+..... .-+.+  ..++   ++++ +.+||+||+
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~--~v~~~~~~g~-~vi~G--Dat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPD--HIETLRKFGM-KVFYG--DATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHH--HHHHHHHTTC-CCEES--CTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHH--HHHHHHhCCC-eEEEc--CCCCHHHHHhcCCCccCEEEE
Confidence            4579999999 9999999999999887  8999999861  1112222211 11221  1123   2233 689999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHH
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  197 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~  197 (356)
                      +.+.+           ..|    ..++..+++.+|+..||.-+ ++.+.      +.+++. |  -..|+--+...+.++
T Consensus        75 ~~~~~-----------~~n----~~i~~~ar~~~p~~~Iiara~~~~~~------~~L~~~-G--ad~Vi~~~~~~a~~l  130 (413)
T 3l9w_A           75 AIDDP-----------QTN----LQLTEMVKEHFPHLQIIARARDVDHY------IRLRQA-G--VEKPERETFEGALKT  130 (413)
T ss_dssp             CCSSH-----------HHH----HHHHHHHHHHCTTCEEEEEESSHHHH------HHHHHT-T--CSSCEETTHHHHHHH
T ss_pred             CCCCh-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHHH------HHHHHC-C--CCEEECccHHHHHHH
Confidence            86421           233    34566677888997766655 45432      223333 4  345665555555566


Q ss_pred             HHHHHHHhCCCCCCC
Q 018433          198 NTFVAEVLGLDPRDV  212 (356)
Q Consensus       198 ~~~la~~l~v~~~~v  212 (356)
                      -..+-..+|+++..+
T Consensus       131 a~~~L~~lg~~~~~~  145 (413)
T 3l9w_A          131 GRLALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHHHTTCCHHHH
T ss_pred             HHHHHHHcCCCHHHH
Confidence            666667777777665

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.21  E-value=0.00038  Score=63.35  Aligned_cols=93  Identities=16%  Similarity=0.190  Sum_probs=58.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||+|||+ |.+|+.++..|...+. .+|.++|+++..  ...+.+. ..  +...   +++.+++ ++|+||++.. + 
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~r~~~~--~~~~~~~-~g--~~~~---~~~~~~~-~~D~vi~~v~-~-   67 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEK--RERLEKE-LG--VETS---ATLPELH-SDDVLILAVK-P-   67 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHH--HHHHHHH-TC--CEEE---SSCCCCC-TTSEEEECSC-H-
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCC-CeEEEECCCHHH--HHHHHHh-cC--CEEe---CCHHHHh-cCCEEEEEeC-c-
Confidence            69999999 9999999999988772 389999987511  1122221 11  2222   3455677 9999999852 1 


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  166 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~  166 (356)
                                    ..+.++.+.+..  ++.+|+.++|....
T Consensus        68 --------------~~~~~v~~~l~~--~~~ivv~~~~g~~~   93 (263)
T 1yqg_A           68 --------------QDMEAACKNIRT--NGALVLSVAAGLSV   93 (263)
T ss_dssp             --------------HHHHHHHTTCCC--TTCEEEECCTTCCH
T ss_pred             --------------hhHHHHHHHhcc--CCCEEEEecCCCCH
Confidence                          113344444433  26666666676653

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=97.21  E-value=0.001  Score=68.90  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-CC----hhhhhCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~al~~aDiV  116 (356)
                      ++|+|.|+||+|++|++++..|+.. +.  +|+++|++....  .++..   ...+..+.+. +|    +.++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTT---CTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhcc---CCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            4578999999999999999999887 66  899999875211  01111   1223332211 22    33467799999


Q ss_pred             EEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          117 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       117 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      |.+|+.....  ..+..+.+..|+.....+++.+.+..  ..++++|.
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS  432 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  432 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEec
Confidence            9998864321  12334566788888999999988765  56666654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.21  E-value=0.005  Score=55.90  Aligned_cols=116  Identities=16%  Similarity=0.078  Sum_probs=71.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++........+..+.. -+|.   ++++       .
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            8 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            4899999999999999999999987  899999875  2222233432211122332211 1232   2223       2


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHH----HHHHHHHHHHHhC--CCcEEEEecCCC
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAG----IVRTLCEGIAKCC--PNATVNLISNPV  164 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~----i~~~i~~~i~~~~--p~a~viv~tNPv  164 (356)
                      ..|++|..||...  .......+..|+.    ..+.+.+.+.+..  +.+.||++|...
T Consensus        86 ~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  142 (267)
T 2gdz_A           86 RLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  142 (267)
T ss_dssp             CCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcc
Confidence            4799999998653  2233445566655    5566666665543  257788776543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.21  E-value=0.00061  Score=68.12  Aligned_cols=102  Identities=11%  Similarity=0.104  Sum_probs=63.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhC---CCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~---~aDiVIi~  119 (356)
                      |||+|||+ |.+|..++..|+..|.  +|.++|++.  ......+.........+..   ++|++++++   ++|+||++
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKA---FETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEEEC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEEEe
Confidence            79999999 9999999999999887  899999875  1211111110000112332   356767665   59999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                      ...+    .           .+.++++.+..+. |+.+||..+|-....
T Consensus        76 Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~sng~~~~  109 (478)
T 1pgj_A           76 VQAG----A-----------ATDSTIEQLKKVFEKGDILVDTGNAHFKD  109 (478)
T ss_dssp             CCCS----H-----------HHHHHHHHHHHHCCTTCEEEECCCCCHHH
T ss_pred             cCCh----H-----------HHHHHHHHHHhhCCCCCEEEECCCCChHH
Confidence            5321    1           1233444555544 677777777776433

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.20  E-value=0.0035  Score=57.22  Aligned_cols=158  Identities=15%  Similarity=0.127  Sum_probs=92.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-----
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-----  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-----  110 (356)
                      +.+++.|+||+|.+|.+++..|+..|.  ++++.|.+.   ......++....  ..+..+.. -+|.   ++++     
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  889988765   233333443322  22322211 1232   2222     


Q ss_pred             --CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          111 --TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       111 --~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                        ...|++|..||......   .+   ....+..|+.....+.+.+..+- ..+.||+++......           .+.
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~~  161 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD-----------FSV  161 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT-----------CCC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc-----------CCC
Confidence              37899999998753211   12   33456778877777777777665 356777776544211           122


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      |..-.++.+......+-+.++..++  +..|++..+
T Consensus       162 ~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  195 (270)
T 3is3_A          162 PKHSLYSGSKGAVDSFVRIFSKDCG--DKKITVNAV  195 (270)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            3333344443333446667777764  344544333

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.20  E-value=0.0019  Score=60.80  Aligned_cols=119  Identities=17%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .++|.|+||+|.+|.+++..|+..|.  .|++.|++.  +.....++........+..+.. -+|   ..+++       
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            34899999999999999999999988  899999986  2223333332211113333211 122   22233       


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHH----HHHHHHHh-----CCCcEEEEecCCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRT----LCEGIAKC-----CPNATVNLISNPV  164 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~-----~p~a~viv~tNPv  164 (356)
                      ...|+||..||......   .+   ....+..|+.....    +.+.+.+.     ...+.|+++|.-.
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a  154 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMA  154 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccc
Confidence            35699999999643211   11   23445566554444    44444433     1366777776543

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.20  E-value=0.0025  Score=58.12  Aligned_cols=158  Identities=14%  Similarity=0.149  Sum_probs=88.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---h---hhhCCCc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---E---NALTGMD  114 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~---~al~~aD  114 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++........+..+.. -+|.   +   +.+...|
T Consensus        10 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A           10 GKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            35799999999999999999999987  899999876  3333334433211123332211 1222   1   2234789


Q ss_pred             EEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          115 LVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       115 iVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      ++|..||......   .+   ....+..|+..    .+.+.+.+.+ ...+.||++|......            +.+..
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~------------~~~~~  154 (267)
T 3t4x_A           88 ILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIE-RKEGRVIFIASEAAIM------------PSQEM  154 (267)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTEEEEEEECCGGGTS------------CCTTC
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCCEEEEEcchhhcc------------CCCcc
Confidence            9999998753221   12   23345667666    4444444443 3456777776543221            12222


Q ss_pred             CEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          185 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       185 kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      -.++.+......+-+.+|..++  +..|++..+.
T Consensus       155 ~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  186 (267)
T 3t4x_A          155 AHYSATKTMQLSLSRSLAELTT--GTNVTVNTIM  186 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEe
Confidence            2233333333456667777764  4455554443

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.19  E-value=0.00096  Score=66.58  Aligned_cols=99  Identities=9%  Similarity=0.068  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a  120 (356)
                      ++||+|||+ |.+|..++..|+..|.  +|.++|++...  +.++........+..   ++++++++++   +|+||++.
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEEEc
Confidence            368999999 9999999999999887  89999987521  112221100112332   3577777666   99999985


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  165 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~  165 (356)
                      ..+    .           .+.++.+.+.... |+.+||..+|-..
T Consensus        77 p~~----~-----------~v~~vl~~l~~~l~~g~iiId~s~~~~  107 (474)
T 2iz1_A           77 QAG----A-----------ATDATIKSLLPLLDIGDILIDGGNTHF  107 (474)
T ss_dssp             CTT----H-----------HHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             cCc----h-----------HHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence            321    1           1334445555555 5677777777653

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.19  E-value=0.0024  Score=56.98  Aligned_cols=98  Identities=17%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi  118 (356)
                      +++|.|+||+|.+|+.++..|+..| .  +|++++++...     +.... ...+..+..    ..++.++++++|+||.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~-----~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~   94 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAK-----IHKPY-PTNSQIIMGDVLNHAALKQAMQGQDIVYA   94 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGG-----SCSSC-CTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhh-----hcccc-cCCcEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            4589999999999999999999888 5  99999987511     11111 112222211    1245567899999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ++|..      ..+      ...+.+++.+++... ..||++|.
T Consensus        95 ~a~~~------~~~------~~~~~~~~~~~~~~~-~~iV~iSS  125 (236)
T 3qvo_A           95 NLTGE------DLD------IQANSVIAAMKACDV-KRLIFVLS  125 (236)
T ss_dssp             ECCST------THH------HHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             cCCCC------chh------HHHHHHHHHHHHcCC-CEEEEEec
Confidence            88642      111      123466677766543 45666654

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.19  E-value=0.0017  Score=59.44  Aligned_cols=119  Identities=17%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC-CCCeEEEEeC-CCC---hhhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFLG-QPQ---LENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~-~~~~v~~~~~-t~d---~~~al~-----  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++.... ....+..+.. -+|   .+++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            34799999999999999999999987  899999875  222233331100 1122332211 122   223344     


Q ss_pred             --CCcEEEEcCCCCCCC---CC----c---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCC
Q 018433          112 --GMDLVIIPAGVPRKP---GM----T---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPV  164 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~---g~----~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNPv  164 (356)
                        +.|++|..||.....   ..    +   ....+..|+.....+.+.+...-  ..+.||++|.-.
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~  150 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIA  150 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEeccc
Confidence              899999999864211   11    2   22345566655544444443321  126777776544

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.19  E-value=0.0024  Score=57.85  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++....  ..+..+.. -+|   .+++++      
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  999999876  222333343221  22222211 122   222333      


Q ss_pred             -CCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          112 -GMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                       ..|++|..||.....+    .+   ....+..|+.....+.+.+..+   ...+.||++|..
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~  152 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSV  152 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEech
Confidence             7999999998642111    11   2344566666555444444321   235677777643

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.19  E-value=0.0024  Score=58.63  Aligned_cols=156  Identities=16%  Similarity=0.141  Sum_probs=86.4

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433           44 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  110 (356)
                      .++|.|+||+|+  +|..++..|+..|.  +|++.|++.......++.....  .+..+. .-+|   .++++       
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFN--PAAVLPCDVISDQEIKDLFVELGKVW  101 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGC--CSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcC--CceEEEeecCCHHHHHHHHHHHHHHc
Confidence            358999999866  99999999999987  8999999863333334433211  111111 1122   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---C-----Cc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCccHHHHHHHHHH
Q 018433          111 TGMDLVIIPAGVPRKP---G-----MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g-----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNPv~~~t~~~~~~~~~  177 (356)
                      ..-|++|..||.....   +     .+   ....+..|+.....+.+.+...-  ..+.||++|......          
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------  171 (280)
T 3nrc_A          102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK----------  171 (280)
T ss_dssp             SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS----------
T ss_pred             CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc----------
Confidence            3569999999875321   1     11   22345667666666666555432  256777776543221          


Q ss_pred             hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          178 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       178 ~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                        +.|..-.++.+......+-+.++..++  +..|++..+
T Consensus       172 --~~~~~~~Y~asKaal~~~~~~la~e~~--~~gi~v~~v  207 (280)
T 3nrc_A          172 --AMPSYNTMGVAKASLEATVRYTALALG--EDGIKVNAV  207 (280)
T ss_dssp             --CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             --CCCCchhhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence              222223334433333445666677663  334544433

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.18  E-value=0.00059  Score=60.62  Aligned_cols=94  Identities=17%  Similarity=0.156  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      .+|||+|||+ |.+|..++..|...+.  +|+++|++..  ...++.+.  .  +...    ++.++++++|+||++...
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~--~~~~~~~~--g--~~~~----~~~~~~~~~DvVi~av~~   93 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPK--RTARLFPS--A--AQVT----FQEEAVSSPEVIFVAVFR   93 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHH--HHHHHSBT--T--SEEE----EHHHHTTSCSEEEECSCG
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHc--C--Ccee----cHHHHHhCCCEEEECCCh
Confidence            3579999998 9999999999998887  8999998642  12223322  1  2221    456889999999998641


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  166 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~  166 (356)
                          ...+ +.       + +    +....++.+|+.++|+...
T Consensus        94 ----~~~~-~v-------~-~----l~~~~~~~~vv~~s~g~~~  120 (215)
T 2vns_A           94 ----EHYS-SL-------C-S----LSDQLAGKILVDVSNPTEQ  120 (215)
T ss_dssp             ----GGSG-GG-------G-G----GHHHHTTCEEEECCCCCHH
T ss_pred             ----HHHH-HH-------H-H----HHHhcCCCEEEEeCCCccc
Confidence                1111 11       1 1    2222368889889998754

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.18  E-value=0.00077  Score=60.50  Aligned_cols=156  Identities=16%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .+++.|+||+|.+|++++..|+..|.  +|+++|++.  ......++....  ..+..+.. -+|.   ++.+       
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999976  233333343322  22332211 1232   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ...|++|..||......   .+   ....+..|+.....+.+.+...   ...+.|+++|.....            .+.
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~~  148 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGS------------AGN  148 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH------------HCC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhc------------cCC
Confidence            25799999998753211   11   2344566665555544443322   245677777654321            123


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      |..-.++.+......+-+.+++.++  +..|++.++
T Consensus       149 ~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  182 (247)
T 3lyl_A          149 PGQTNYCAAKAGVIGFSKSLAYEVA--SRNITVNVV  182 (247)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence            3333344443333456667777763  334544333

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.18  E-value=0.0036  Score=57.80  Aligned_cols=121  Identities=12%  Similarity=0.101  Sum_probs=73.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC---CCCeEEEEeC-CCC---hhhhhC-
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TGAVVRGFLG-QPQ---LENALT-  111 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~---~~~~v~~~~~-t~d---~~~al~-  111 (356)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....   ....+..+.. -+|   .+++++ 
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   93 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   93 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence            3456899999999999999999999987  899999875  233333443210   1123333221 122   222333 


Q ss_pred             ------CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 018433          112 ------GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNPV  164 (356)
Q Consensus       112 ------~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNPv  164 (356)
                            ..|+||..||......   .+   ....+..|+.....+.+.+....   ..+.||+++...
T Consensus        94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~  161 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT  161 (303)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec
Confidence                  5899999998542211   12   23446677777777766654421   246777776544

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.18  E-value=0.0021  Score=58.58  Aligned_cols=96  Identities=15%  Similarity=0.065  Sum_probs=59.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCChhhhhCCCcEEEEcCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~~~al~~aDiVIi~ag~  122 (356)
                      +|||.|+|| |++|++++..|+..|.  +|+.++++.....  .+...    .+..+.. -+|+.  ++++|+||.+++.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQME--AIRAS----GAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHH--HHHHT----TEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhh--hHhhC----CCeEEEecccccc--cCCCCEEEECCCc
Confidence            369999998 9999999999998887  9999998752211  12221    1222211 23442  8899999999875


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  161 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  161 (356)
                      ... + .         +..+.+.+.+++.+ .-..+|.+|
T Consensus        74 ~~~-~-~---------~~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           74 DSG-G-D---------PVLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             BTT-B-C---------HHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             ccc-c-c---------HHHHHHHHHHHhhcCCceEEEEee
Confidence            421 1 1         12345666666642 223455544

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.17  E-value=0.00051  Score=63.57  Aligned_cols=97  Identities=15%  Similarity=0.022  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiV  116 (356)
                      ++||.|+||+|++|++++..|+..+.  +|++++++..   ......+.... ...+..+.+    ..++.++++++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence            46899999999999999999998886  8899998741   11221121110 011222111    12456788999999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  152 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  152 (356)
                      |.+++.... +        .|....+.+++.+++..
T Consensus        81 i~~a~~~~~-~--------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           81 ISALAGGVL-S--------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             EECCCCSSS-S--------TTTTTHHHHHHHHHHSC
T ss_pred             EECCccccc-h--------hhHHHHHHHHHHHHhcC
Confidence            999875421 1        13444566777777654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.17  E-value=0.00068  Score=61.44  Aligned_cols=144  Identities=13%  Similarity=0.018  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.     ..+..+. .-+|   .+++++      
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (257)
T 3tpc_A            7 SRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELG-----AAVRFRNADVTNEADATAALAFAKQEF   79 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34789999999999999999999987  899999886  222222221     1111111 1122   222333      


Q ss_pred             -CCcEEEEcCCCCCCCC-------C---cHHHHHHHHHHHHHHHHHHHHHh---------CCCcEEEEecCCCCccHHHH
Q 018433          112 -GMDLVIIPAGVPRKPG-------M---TRDDLFNINAGIVRTLCEGIAKC---------CPNATVNLISNPVNSTVPIA  171 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g-------~---~r~~~~~~N~~i~~~i~~~i~~~---------~p~a~viv~tNPv~~~t~~~  171 (356)
                       ..|++|..||......       .   +....+..|+.....+.+.+..+         ...+.||++|.....     
T Consensus        80 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~-----  154 (257)
T 3tpc_A           80 GHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAF-----  154 (257)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH-----
T ss_pred             CCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----
Confidence             8999999998643211       1   12344566766555555555443         235677777653311     


Q ss_pred             HHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhC
Q 018433          172 AEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       172 ~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                             .+.+..-.++.+......+-+.+|..++
T Consensus       155 -------~~~~~~~~Y~asKaa~~~~~~~la~e~~  182 (257)
T 3tpc_A          155 -------DGQIGQAAYAASKGGVAALTLPAARELA  182 (257)
T ss_dssp             -------HCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -------cCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence                   1233333344433333445566677763

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.17  E-value=0.0052  Score=55.29  Aligned_cols=116  Identities=18%  Similarity=0.195  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCCh----hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL----ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~e-l~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~----~~al-------  110 (356)
                      .++|.|+||+|.+|.+++..|+..|.  + |+++|++.......++........+..+.. -+|.    ++++       
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            45899999999999999999999886  5 899998762222223332211123333211 1221    2222       


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC------CCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC------PNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~------p~a~viv~tNP  163 (356)
                      ...|+||..||...  .......+..|+.....+.+.+...-      +.+.|+++|..
T Consensus        83 g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~  139 (254)
T 1sby_A           83 KTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV  139 (254)
T ss_dssp             SCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECch
Confidence            37899999998642  23344556677766666555554321      24677777654

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=97.17  E-value=0.00025  Score=65.62  Aligned_cols=167  Identities=13%  Similarity=0.082  Sum_probs=93.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhC--CCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi~  119 (356)
                      |||.|+||+|++|++++..|+..  +.  +|+++|++.......  ...   ..+.. .....++.++++  ++|+||.+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~--~~~---~~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDVV--NSG---PFEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHHH--HSS---CEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccccc--CCC---ceEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            68999999999999999999876  55  889999876221111  111   11111 000123445666  89999999


Q ss_pred             CCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHH
Q 018433          120 AGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  198 (356)
Q Consensus       120 ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~  198 (356)
                      ++..... ..+..+.+..|+.....+++.+.+.... .+|++|...-.-..--.....+.....+...+|.+.....++-
T Consensus        76 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~  154 (312)
T 2yy7_A           76 AALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWC  154 (312)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHHHHHHHHH
T ss_pred             CccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHHHHHHHHH
Confidence            9854211 1234456788999999999998875432 5555442210000000000000001122334455544445555


Q ss_pred             HHHHHHhCCCCCCCc-ccEEec
Q 018433          199 TFVAEVLGLDPRDVD-VPVVGG  219 (356)
Q Consensus       199 ~~la~~l~v~~~~v~-~~viG~  219 (356)
                      ..+++..|++..-++ ..++|.
T Consensus       155 ~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          155 EYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHCCEEECEEECEEECS
T ss_pred             HHHHHhcCCcEEEEeCCeEecC
Confidence            556666777766665 567774

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.16  E-value=0.0011  Score=60.14  Aligned_cols=112  Identities=21%  Similarity=0.221  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++..     .+..+. .-+|   .+++++      
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~~~~   84 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAIDAL   84 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  899999875  2222222211     111111 1122   223343      


Q ss_pred             -CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecC
Q 018433          112 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  162 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tN  162 (356)
                       ..|+||..||......   .+   ....+..|+.....+.+.    +.+....+.|+++|.
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           85 GGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence             7999999998653211   11   233455666554444444    433332567777764

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.16  E-value=0.0029  Score=57.15  Aligned_cols=115  Identities=19%  Similarity=0.289  Sum_probs=69.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC-------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-------  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++....  ..+..+. .-+|   .+++++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999987  899999876  233333343221  1222221 1123   223333       


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      ..|++|..||......   .+   ....+..|+..    .+...+.+.+..+.+.||++|.-
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  140 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQ  140 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECch
Confidence            7999999998643211   12   22345556544    44455555544435677777653

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.15  E-value=0.0021  Score=64.25  Aligned_cols=100  Identities=17%  Similarity=0.172  Sum_probs=63.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc-CCCCCeEEEEeCCCChhhhh---CCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENAL---TGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~~al---~~aDiVIi~a  120 (356)
                      |||+|||+ |.+|..++..|+..|.  +|.++|++...  +.++.. ......+..   ++|+++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            68999999 9999999999999887  89999997621  112222 100112332   35676665   5999999985


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                      ..+    .           .+.++++.+..+. |+.+||..+|-....
T Consensus        75 p~~----~-----------~v~~vl~~l~~~l~~g~iII~~s~~~~~~  107 (482)
T 2pgd_A           75 KAG----Q-----------AVDNFIEKLVPLLDIGDIIIDGGNSEYRD  107 (482)
T ss_dssp             CTT----H-----------HHHHHHHHHHHHCCTTCEEEECSCCCHHH
T ss_pred             CCh----H-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHH
Confidence            321    1           1233344455444 567777777765433

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.15  E-value=0.0013  Score=65.91  Aligned_cols=100  Identities=17%  Similarity=0.184  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC-CCCCeEEEEeCCCChhhhhC---CCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALT---GMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~-~~~~~v~~~~~t~d~~~al~---~aDiVIi  118 (356)
                      .+|||+|||. |.+|.+++..|+..|+  +|+++|+++..  +.++... .....+..   +++++++++   ++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g~~g~~i~~---~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVVG---AQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhcccCCCceec---cCCHHHHHhhccCCCEEEE
Confidence            4579999999 9999999999999987  99999998621  1222221 11123332   345666655   6999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  165 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~  165 (356)
                      +...+    .           .+.++++.+...- |+.+||..||-..
T Consensus        75 ~Vp~~----~-----------~v~~vl~~l~~~L~~g~iIId~st~~~  107 (484)
T 4gwg_A           75 LVKAG----Q-----------AVDDFIEKLVPLLDTGDIIIDGGNSEY  107 (484)
T ss_dssp             CSCSS----H-----------HHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             ecCCh----H-----------HHHHHHHHHHHhcCCCCEEEEcCCCCc
Confidence            85321    1           1334445565554 6777777776553

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.15  E-value=0.0029  Score=57.25  Aligned_cols=119  Identities=15%  Similarity=0.134  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeC----CCChhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLG----QPQLENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..+. ..+|+++|++.. .....++....  ..+..+..    ..+..++++      
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccC--CceEEEEecCCChHHHHHHHHHHHHhc
Confidence            35899999999999999999998871 129999999862 11222332211  12222211    123333443      


Q ss_pred             ---CCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHh----------CC----CcEEEEecCCC
Q 018433          112 ---GMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC----------CP----NATVNLISNPV  164 (356)
Q Consensus       112 ---~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~----------~p----~a~viv~tNPv  164 (356)
                         ..|+||..||.....+    .+   ....+..|+.....+.+.+...          .+    .+.||++|...
T Consensus        99 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  175 (267)
T 1sny_A           99 KDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL  175 (267)
T ss_dssp             GGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred             CCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccc
Confidence               7999999998754111    11   2334556665555555444332          11    46777776544

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.14  E-value=0.0022  Score=58.34  Aligned_cols=156  Identities=13%  Similarity=0.156  Sum_probs=89.9

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCC---hhhhhC-------
Q 018433           45 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENALT-------  111 (356)
Q Consensus        45 ~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d---~~~al~-------  111 (356)
                      ++|.|+||+  |.+|.+++..|+..|.  +|+++|++. ......++.........-. ..-+|   .+++++       
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~-~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQ-CDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEE-ccCCCHHHHHHHHHHHHHHcC
Confidence            479999998  8999999999999987  899999876 2223333322111111110 11122   222232       


Q ss_pred             CCcEEEEcCCCCCC-----C--C-Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          112 GMDLVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-----~--g-~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      ..|++|..||....     +  . .+   ....+..|+.....+.+.+..+- +.+.||++|......            
T Consensus        87 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------  154 (265)
T 1qsg_A           87 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER------------  154 (265)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------------
T ss_pred             CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc------------
Confidence            67999999987532     1  0 11   23456788888888888877653 246777776532211            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +.|..-.++.+......+-+.++..++  +..|++.++
T Consensus       155 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  190 (265)
T 1qsg_A          155 AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  190 (265)
T ss_dssp             BCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            122233344443334456666777763  344544433

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.14  E-value=0.0068  Score=55.59  Aligned_cols=156  Identities=15%  Similarity=0.194  Sum_probs=87.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC-CCChhh---h------hC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQLEN---A------LT  111 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-t~d~~~---a------l~  111 (356)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.++ ....+.++....  ..+..+.. -+|.++   .      +.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGG--GSAEAVVADLADLEGAANVAEELAATR  105 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence            456899999999999999999999988  899999655 333444444332  23333221 123211   1      23


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ..|++|..||......   .+   ....+..|+.....+.+    .+.+. ..+.||++|......            +.
T Consensus       106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~~------------~~  172 (273)
T 3uf0_A          106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAH-GSGRIVTIASMLSFQ------------GG  172 (273)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------CC
T ss_pred             CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcchHhcC------------CC
Confidence            7899999998753221   11   23445666655544444    44443 356777776533211            22


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +..-.++.+......+-+.+|..++  +..|++..+
T Consensus       173 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  206 (273)
T 3uf0_A          173 RNVAAYAASKHAVVGLTRALASEWA--GRGVGVNAL  206 (273)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            2222233333333445666777763  334544333

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.14  E-value=0.0069  Score=55.51  Aligned_cols=158  Identities=17%  Similarity=0.118  Sum_probs=90.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeC-CCCh---hhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLG-QPQL---ENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~-t~d~---~~al------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++..... ...+..+.. -+|.   ++++      
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            34799999999999999999999987  899999876  3334445544321 113433321 1232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 -TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                       ...|++|..||.....+    .+   ....+..|+.....+.+.+..+   ...+.||++|....            ..
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~------------~~  156 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAA------------SN  156 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHH------------HS
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHH------------cC
Confidence             26799999998632211    12   2345566776555555544332   34567887764221            01


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +.+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       157 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  192 (281)
T 3svt_A          157 THRWFGAYGVTKSAVDHLMQLAADELG--ASWVRVNSI  192 (281)
T ss_dssp             CCTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            233333444444444456677777774  334544433

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.13  E-value=0.004  Score=56.76  Aligned_cols=157  Identities=16%  Similarity=0.176  Sum_probs=87.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCChhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++.... ...+..+..    ..+.++++       
T Consensus        20 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           20 GKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            34799999999999999999999987  899999976  333333343211 122222211    12222222       


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ...|++|..||......   .+   ....+..|+..    .+...+.+.+....+.||++|.-....            +
T Consensus        97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------~  164 (266)
T 4egf_A           97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA------------P  164 (266)
T ss_dssp             TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------C
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc------------C
Confidence            37899999998753221   11   22345556544    444555555555567888876543221            2


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .+..-.++.+......+-+.++..++  +..|++..+
T Consensus       165 ~~~~~~Y~asK~a~~~l~~~la~e~~--~~gI~vn~v  199 (266)
T 4egf_A          165 LPDHYAYCTSKAGLVMATKVLARELG--PHGIRANSV  199 (266)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            22222333333333445666777763  334444333

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.13  E-value=0.00028  Score=63.18  Aligned_cols=112  Identities=15%  Similarity=0.092  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh---------CCCc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL---------TGMD  114 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al---------~~aD  114 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++...... . .. ....++..   ..+.++++         ...|
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~-~-~~-~~~~D~~~---~~~~~~~~~~~~~~~~~g~id   74 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQAD-S-NI-LVDGNKNW---TEQEQSILEQTASSLQGSQVD   74 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSS-E-EE-ECCTTSCH---HHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCcccccc-c-cE-EEeCCCCC---HHHHHHHHHHHHHHhCCCCCC
Confidence            35799999999999999999999987  89999987621100 0 00 00011110   01112222         3789


Q ss_pred             EEEEcCCCCCC----CCC---cHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 018433          115 LVIIPAGVPRK----PGM---TRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  163 (356)
Q Consensus       115 iVIi~ag~~~~----~g~---~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  163 (356)
                      +||..+|....    ...   .....+..|+.....+.+.+..+- ..+.||++|..
T Consensus        75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  131 (236)
T 1ooe_A           75 GVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA  131 (236)
T ss_dssp             EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECch
Confidence            99999986431    111   123456678877777777776553 24677777654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.13  E-value=0.00084  Score=54.52  Aligned_cols=100  Identities=9%  Similarity=0.042  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh---hhh-hCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---ENA-LTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~~a-l~~aDiVIi~  119 (356)
                      ++||.|+|+ |.+|..++..|...+.  +++++|.++.  ....+...  ...+. ....+|.   .++ +.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~--~~~~~~~~--~~~~~-~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASY--ATHAV-IANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHTTTTT--CSEEE-ECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHh--CCEEE-EeCCCCHHHHHhcCCCCCCEEEEC
Confidence            347999999 9999999999998886  8899998641  11112221  11211 1111222   222 6789999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      .+.+          ...|..    ++..+++.+|+.++...+||..
T Consensus        78 ~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~~  109 (144)
T 2hmt_A           78 IGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYYH  109 (144)
T ss_dssp             CCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHHH
T ss_pred             CCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHHH
Confidence            7643          123332    3444556677644444456654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.13  E-value=0.0012  Score=59.72  Aligned_cols=153  Identities=15%  Similarity=0.173  Sum_probs=86.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++.     ..+..+.. -+|   .++++       
T Consensus         6 gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (247)
T 3rwb_A            6 GKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIG-----KKARAIAADISDPGSVKALFAEIQALT   78 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45899999999999999999999987  899999876  222223331     11221110 112   22223       


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ...|++|..||......   .+   ....+..|+.....+    .+.+++..+.+.|+++|.-...            .+
T Consensus        79 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~  146 (247)
T 3rwb_A           79 GGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFF------------AG  146 (247)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHH------------HT
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhc------------cC
Confidence            37899999998643211   12   233455666554444    4446666556788877653211            12


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .|..-.++.+......+-+.+|..++  +..|++..+
T Consensus       147 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  181 (247)
T 3rwb_A          147 TPNMAAYVAAKGGVIGFTRALATELG--KYNITANAV  181 (247)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            33333344433333446667777763  344544333

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.13  E-value=0.0026  Score=57.45  Aligned_cols=113  Identities=6%  Similarity=-0.032  Sum_probs=67.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhh-------CCCcEEE
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL-------TGMDLVI  117 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-------~~aDiVI  117 (356)
                      ++.|+||+|.+|.+++..|+..|.  +|++.|++. ......++....  ..+..+ ...+.++++       ...|++|
T Consensus         3 ~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~-d~~~v~~~~~~~~~~~g~iD~lv   77 (254)
T 1zmt_A            3 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETY--PQLKPM-SEQEPAELIEAVTSAYGQVDVLV   77 (254)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHC--TTSEEC-CCCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC--CcEEEE-CHHHHHHHHHHHHHHhCCCCEEE
Confidence            689999999999999999999987  899999876 211122232211  111111 123444433       3789999


Q ss_pred             EcCCCC-CCCC---Cc---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCC
Q 018433          118 IPAGVP-RKPG---MT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPV  164 (356)
Q Consensus       118 i~ag~~-~~~g---~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNPv  164 (356)
                      ..||.. ....   .+   ....+..|+.....+.+    .+++. ..+.||++|.-.
T Consensus        78 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~  134 (254)
T 1zmt_A           78 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR-KSGHIIFITSAT  134 (254)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCST
T ss_pred             ECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECCcc
Confidence            999875 2111   12   23345566654444444    44443 356777776544

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.12  E-value=0.0024  Score=56.73  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC--------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~--------  111 (356)
                      .++|.|+||+|.+|.+++..|+..+...+|+++|++.....  ++.+.. ...+..+.. -+|   .+++++        
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~--~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT--ELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH--HHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH--HHHhcc-CCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence            45899999999999999999999882129999998762111  122211 123333211 122   223333        


Q ss_pred             -CCcEEEEcCCCCC--CC--CCc---HHHHHHHHHHHHHHHHHH----HHHh------C----CCcEEEEecCCC
Q 018433          112 -GMDLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEG----IAKC------C----PNATVNLISNPV  164 (356)
Q Consensus       112 -~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~----i~~~------~----p~a~viv~tNPv  164 (356)
                       +.|+||..+|...  .+  ..+   ....+..|+.....+.+.    +.+.      .    +.+.||++|...
T Consensus        80 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  154 (250)
T 1yo6_A           80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL  154 (250)
T ss_dssp             GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred             CCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCc
Confidence             8999999998653  11  112   233455665554444444    3333      2    156777776543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.12  E-value=0.0029  Score=57.33  Aligned_cols=156  Identities=19%  Similarity=0.156  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++.+..  ..+..+.. -+|.   ++.+       
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           12 DAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             TCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999887  899999876  333333444322  22322211 1232   2223       


Q ss_pred             CCCcEEEEcCCCCCCC--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433          111 TGMDLVIIPAGVPRKP--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYD  182 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~  182 (356)
                      ...|++|..||.....  ..+   ....+..|+.....+.+.+..+   ...+.||++|......            +.+
T Consensus        88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~  155 (256)
T 3gaf_A           88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN------------TNV  155 (256)
T ss_dssp             SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC------------CCT
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC------------CCC
Confidence            3789999999864321  222   2334556665555555554322   3467788876543221            222


Q ss_pred             CCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          183 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       183 ~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ..-.++.+......+-+.++..++  +..|++..+
T Consensus       156 ~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  188 (256)
T 3gaf_A          156 RMASYGSSKAAVNHLTRNIAFDVG--PMGIRVNAI  188 (256)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            222333333333456666777763  334544333

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.12  E-value=0.0088  Score=55.53  Aligned_cols=149  Identities=17%  Similarity=0.168  Sum_probs=84.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hh-------h
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---EN-------A  109 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~-------a  109 (356)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++.... ...+..+.. -+|.   ++       .
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999987  344444554432 123333211 1232   11       2


Q ss_pred             hCCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          110 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      +...|++|..||.....   ..+   ....+..|+.....+.+.+    .+.. .+.||++|.-....           .
T Consensus       117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~isS~~~~~-----------~  184 (293)
T 3rih_A          117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTSSITGPV-----------T  184 (293)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEECCSBTTT-----------B
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEeChhhcc-----------C
Confidence            34679999999864321   122   2344566665555554444    4443 46677776543221           1


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhC
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                      +.|..-.++.+......+-+.+|..++
T Consensus       185 ~~~~~~~Y~asKaa~~~l~~~la~e~~  211 (293)
T 3rih_A          185 GYPGWSHYGASKAAQLGFMRTAAIELA  211 (293)
T ss_dssp             BCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            222222333333333456666777763

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.12  E-value=0.00039  Score=60.39  Aligned_cols=111  Identities=15%  Similarity=0.164  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhC---CCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~---~aDiVIi~  119 (356)
                      ++|.|+||+|.+|++++..|+..    +|+++|++.  ......++.......++.   ...++.++++   +.|+||..
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADLA---DELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCTT---SHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeCC---CHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999999876    899999875  222222221100001111   0122334555   89999999


Q ss_pred             CCCCCCC------CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          120 AGVPRKP------GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       120 ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      +|.....      ..+....+..|+.....+.+.+.+ .+.+.|+++|..
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~iv~~sS~  122 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARF-QKGARAVFFGAY  122 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCE-EEEEEEEEECCC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHh-cCCcEEEEEcCh
Confidence            9865321      123445677888888888887743 234667777653

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.11  E-value=0.00056  Score=63.70  Aligned_cols=109  Identities=13%  Similarity=0.134  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh-CCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi~ag~~  123 (356)
                      |||+|||+ |.+|..++..|...+.  +|.++|++.. ..  ++............   .+..+++ .++|+||++.-  
T Consensus         3 mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~-~~--~~~~~~g~~~~~~~---~~~~~~~~~~~D~vilavk--   71 (294)
T 3g17_A            3 LSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAK-TI--TYYTVPHAPAQDIV---VKGYEDVTNTFDVIIIAVK--   71 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCE-EE--EEESSTTSCCEEEE---EEEGGGCCSCEEEEEECSC--
T ss_pred             cEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccC-cE--EEEecCCeecccee---cCchHhcCCCCCEEEEeCC--
Confidence            79999999 9999999999998776  8899998751 00  11111111112221   1223555 89999999852  


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                        +..            +.++++.+..+- |+..|+.+.|-.+...        .   +|.+++++-
T Consensus        72 --~~~------------~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--------~---~~~~~v~~g  113 (294)
T 3g17_A           72 --THQ------------LDAVIPHLTYLAHEDTLIILAQNGYGQLE--------H---IPFKNVCQA  113 (294)
T ss_dssp             --GGG------------HHHHGGGHHHHEEEEEEEEECCSSCCCGG--------G---CCCSCEEEC
T ss_pred             --ccC------------HHHHHHHHHHhhCCCCEEEEeccCcccHh--------h---CCCCcEEEE
Confidence              111            334445555443 6778888899998763        1   677787654

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.11  E-value=0.0038  Score=56.96  Aligned_cols=118  Identities=15%  Similarity=0.117  Sum_probs=70.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEeC-CCC-------hhhhh--
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFLG-QPQ-------LENAL--  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~~-t~d-------~~~al--  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|+ +.  ......++.... ...+..+.. -+|       .++++  
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHHH
Confidence            35899999999999999999999987  8999998 54  222333332210 112222111 122       22222  


Q ss_pred             -----CCCcEEEEcCCCCCCCC-----------------CcHHHHHHHHHHHHHHHHHHHHHhC--CC------cEEEEe
Q 018433          111 -----TGMDLVIIPAGVPRKPG-----------------MTRDDLFNINAGIVRTLCEGIAKCC--PN------ATVNLI  160 (356)
Q Consensus       111 -----~~aDiVIi~ag~~~~~g-----------------~~r~~~~~~N~~i~~~i~~~i~~~~--p~------a~viv~  160 (356)
                           ...|++|..||......                 ......+..|+.....+.+.+..+-  ..      +.||++
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i  167 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL  167 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence                 27899999998643211                 1123456677777777777666542  22      677777


Q ss_pred             cCCC
Q 018433          161 SNPV  164 (356)
Q Consensus       161 tNPv  164 (356)
                      |...
T Consensus       168 sS~~  171 (276)
T 1mxh_A          168 CDAM  171 (276)
T ss_dssp             CCGG
T ss_pred             Cchh
Confidence            6543

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.10  E-value=0.0024  Score=57.64  Aligned_cols=118  Identities=14%  Similarity=0.128  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC-----CCCeEEEEeC-CCC---hhhhhCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-----TGAVVRGFLG-QPQ---LENALTG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~-----~~~~v~~~~~-t~d---~~~al~~  112 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++....     ....+..+.. -+|   .++++++
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            45899999999999999999999987  899999875  222222221110     0012222211 123   2233333


Q ss_pred             -------C-cEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHHh----CCCcEEEEecCC
Q 018433          113 -------M-DLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNP  163 (356)
Q Consensus       113 -------a-DiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~----~p~a~viv~tNP  163 (356)
                             . |+||..||......   .   .....+..|+.....+.+.+.+.    ...+.||++|..
T Consensus        85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  153 (264)
T 2pd6_A           85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSI  153 (264)
T ss_dssp             HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCT
T ss_pred             HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECCh
Confidence                   3 99999998653211   1   22344566666555555554443    325677777653

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.10  E-value=0.006  Score=55.44  Aligned_cols=146  Identities=14%  Similarity=0.102  Sum_probs=81.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhhC------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT------  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al~------  111 (356)
                      ++|.|+||+|.+|.+++..|+..|.  ++++.+...   ......++....  ..+..+.. -+|.   +++++      
T Consensus        27 k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (267)
T 4iiu_A           27 RSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQCREVLEHEIAQH  102 (267)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            3799999999999999999999987  776665443   222333343322  22332211 1232   22232      


Q ss_pred             -CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                       ..|++|..||......   .+   ....+..|+.....+.+    .+.+....+.||++|.....            .+
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~------------~~  170 (267)
T 4iiu_A          103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGV------------MG  170 (267)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHH------------HC
T ss_pred             CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhc------------cC
Confidence             7899999998753221   12   23445666655444444    34434567788887653211            12


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhC
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                      .+..-.++.+......+-+.++..+.
T Consensus       171 ~~~~~~Y~asKaa~~~~~~~la~e~~  196 (267)
T 4iiu_A          171 NRGQVNYSAAKAGIIGATKALAIELA  196 (267)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            33333344433333445666777763

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.09  E-value=0.011  Score=53.53  Aligned_cols=147  Identities=14%  Similarity=0.126  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh------
Q 018433           44 GFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G-~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al------  110 (356)
                      .+++.|+||+| .+|.+++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+|.   ++++      
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            45899999977 499999999999987  899999976  333334443322 123333321 1222   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                       ...|++|..||......   .+   ....+..|+.....+.+.    +.+....+.|+++|......            
T Consensus        99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~------------  166 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR------------  166 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC------------
T ss_pred             hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC------------
Confidence             36799999998643221   12   233455565544444444    44333567777776533221            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHh
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVL  205 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l  205 (356)
                      +.+..-.++.+......+-+.++..+
T Consensus       167 ~~~~~~~Y~~sKaa~~~~~~~la~e~  192 (266)
T 3o38_A          167 AQHSQSHYAAAKAGVMALTRCSAIEA  192 (266)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            22222333443333344556666665

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.09  E-value=0.0043  Score=56.06  Aligned_cols=112  Identities=20%  Similarity=0.210  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++     ...+..+. .-+|   .+++++      
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999875  22222222     11222211 1122   222333      


Q ss_pred             -CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 018433          112 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  163 (356)
                       ..|++|..||......   .+   ....+..|+...    +.+.+.+++.. .+.||++|..
T Consensus        78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  139 (254)
T 1hdc_A           78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSA  139 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECch
Confidence             8999999998653211   11   233455665444    45566665543 5677777653

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.08  E-value=0.0063  Score=54.89  Aligned_cols=156  Identities=15%  Similarity=0.138  Sum_probs=86.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-C--CCh---hhhh-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-Q--PQL---ENAL-----  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t--~d~---~~al-----  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++..... ..+..+.. -  +|.   ++.+     
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHHH
Confidence            45899999999999999999999987  899999876  2333333332111 11111110 1  121   2222     


Q ss_pred             --CCCcEEEEcCCCCC--CC--CCc---HHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecCCCCccHHHHHHHHHHh
Q 018433          111 --TGMDLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNPVNSTVPIAAEVFKKA  178 (356)
Q Consensus       111 --~~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNPv~~~t~~~~~~~~~~  178 (356)
                        ...|++|..||...  .+  ..+   ....+..|+.....+.+.+..   ....+.||++|......           
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-----------  157 (252)
T 3f1l_A           89 NYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ-----------  157 (252)
T ss_dssp             HCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS-----------
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc-----------
Confidence              37899999998632  11  122   234456666655555555432   23456777776543221           


Q ss_pred             CCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          179 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       179 ~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                       +.+..-.++.+......+-+.+|..++  +. |++..+
T Consensus       158 -~~~~~~~Y~asK~a~~~l~~~la~e~~--~~-irvn~v  192 (252)
T 3f1l_A          158 -GRANWGAYAASKFATEGMMQVLADEYQ--QR-LRVNCI  192 (252)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHTT--TT-CEEEEE
T ss_pred             -CCCCCchhHHHHHHHHHHHHHHHHHhc--CC-cEEEEE
Confidence             222222233333333456677788775  33 655444

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.08  E-value=0.00054  Score=62.27  Aligned_cols=67  Identities=18%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .+|||+|||+ |.+|..++..|...+.  ++.++|+++..  ..++.+.. .  +.   .++|+.++++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~--~~~~~~~~-g--~~---~~~~~~~~~~~~D~Vi~~v   68 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL-A--LP---YAMSHQDLIDQVDLVILGI   68 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH-T--CC---BCSSHHHHHHTCSEEEECS
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHHc-C--CE---eeCCHHHHHhcCCEEEEEe
Confidence            3579999998 9999999999987775  89999987521  11222110 1  11   1356778889999999986

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.08  E-value=0.0012  Score=55.13  Aligned_cols=102  Identities=10%  Similarity=-0.025  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chh-HHHHHhcCCCCCeEEEEeCCCC---hhhh-hCCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPG-VTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g-~~~dl~~~~~~~~v~~~~~t~d---~~~a-l~~aDiV  116 (356)
                      +..||.|+|+ |.+|+.++..|...+.  +++++|.+. ... ...+....  ...+-.- ..+|   +.++ +.+||.|
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~--~~~~i~g-d~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGD--NADVIPG-DSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCT--TCEEEES-CTTSHHHHHHHTTTTCSEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcC--CCeEEEc-CCCCHHHHHHcChhhCCEE
Confidence            3468999998 9999999999998887  899999874 111 11111111  1111110 1122   2333 8899999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE-ecCCCC
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVN  165 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv-~tNPv~  165 (356)
                      |++.+..           ..|..    ++..+++.+|+..++. +.||..
T Consensus        76 i~~~~~d-----------~~n~~----~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           76 LALSDND-----------ADNAF----VVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EECSSCH-----------HHHHH----HHHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEecCCh-----------HHHHH----HHHHHHHHCCCCEEEEEECCHHH
Confidence            9986421           33433    3444556677766555 456654

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.08  E-value=0.0069  Score=54.46  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++....  ..+..+.. -+|.   +++       +
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  899999875  233333443221  22332211 1232   222       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  163 (356)
                      ...|++|..||.....   ..+   ....+..|+.....+.+.    +.+..  +.||++|.-
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~  143 (247)
T 2jah_A           83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSSI  143 (247)
T ss_dssp             SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEccH
Confidence            3799999999864321   122   233455666555444444    43333  777777653

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.07  E-value=0.00079  Score=62.68  Aligned_cols=90  Identities=17%  Similarity=0.151  Sum_probs=57.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhH-HHHHhcCCCCCeEEEEe--CCCChhhhhCCCcEEEEcCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~-~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~ag  121 (356)
                      ||.|+||+|++|++++..|+..|.  +|+.++++.. ... ..++....  ..+....  ...++.++++++|+||.+++
T Consensus        13 ~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~--v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           13 KILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLG--AIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             eEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCC--CEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            899999999999999999998886  8889998752 211 12232211  1211110  01245678899999999987


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  152 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  152 (356)
                      ...             ....+.+++.+++..
T Consensus        89 ~~~-------------~~~~~~l~~aa~~~g  106 (318)
T 2r6j_A           89 FPQ-------------ILDQFKILEAIKVAG  106 (318)
T ss_dssp             GGG-------------STTHHHHHHHHHHHC
T ss_pred             hhh-------------hHHHHHHHHHHHhcC
Confidence            431             122345666666654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.07  E-value=0.0021  Score=58.85  Aligned_cols=113  Identities=24%  Similarity=0.277  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCC---hhhhhC-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ---LENALT-------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d---~~~al~-------  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++..   ....... .-+|   .+++++       
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~-Dv~~~~~v~~~~~~~~~~~g   84 (271)
T 3tzq_B           11 NKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR---GAVHHVV-DLTNEVSVRALIDFTIDTFG   84 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT---TCEEEEC-CTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC---CeEEEEC-CCCCHHHHHHHHHHHHHHcC
Confidence            35799999999999999999999987  899999987  2333333311   1111110 1122   222333       


Q ss_pred             CCcEEEEcCCCCCC-CC----Cc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRK-PG----MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-~g----~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP  163 (356)
                      ..|++|..||.... .+    .+   ....+..|+.....+.+.+    .+ ...+.||++|..
T Consensus        85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~~~g~iv~isS~  147 (271)
T 3tzq_B           85 RLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLIS-AGGGAIVNISSA  147 (271)
T ss_dssp             CCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCEEEEECCH
Confidence            78999999987522 11    12   2345667776665555555    43 346777777654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.07  E-value=0.0011  Score=61.21  Aligned_cols=76  Identities=21%  Similarity=0.199  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c---h-hHH---HHHhcCCCCCeEEEEe--CCCChhhhhCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---P-GVT---ADISHMDTGAVVRGFL--GQPQLENALTGM  113 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~---~-g~~---~dl~~~~~~~~v~~~~--~t~d~~~al~~a  113 (356)
                      ++||.|+||+|++|++++..|+..|.  +|+.++++. .   . ...   .++....  ..+....  ...++.++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~--v~~v~~D~~d~~~l~~~~~~~   77 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLG--VILLEGDINDHETLVKAIKQV   77 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCC--CEEEEeCCCCHHHHHHHHhCC
Confidence            46899999999999999999998886  888888874 1   1 111   1222211  1111110  012356788999


Q ss_pred             cEEEEcCCCC
Q 018433          114 DLVIIPAGVP  123 (356)
Q Consensus       114 DiVIi~ag~~  123 (356)
                      |+||.+++..
T Consensus        78 d~vi~~a~~~   87 (307)
T 2gas_A           78 DIVICAAGRL   87 (307)
T ss_dssp             SEEEECSSSS
T ss_pred             CEEEECCccc
Confidence            9999998754

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.06  E-value=0.0051  Score=56.48  Aligned_cols=116  Identities=12%  Similarity=0.102  Sum_probs=72.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++....  ..+..+.. -+|.   ++++       .
T Consensus        25 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999987  899999876  333344454332  23333211 1232   1222       3


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh-----CCCcEEEEecCCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-----CPNATVNLISNPV  164 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-----~p~a~viv~tNPv  164 (356)
                      ..|++|..||......   .+   ....+..|+.....+.+.+...     ...+.||++|...
T Consensus       101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~  164 (279)
T 3sju_A          101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTG  164 (279)
T ss_dssp             SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGG
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChh
Confidence            6899999998653211   11   2345567777666666655431     2356778776543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.06  E-value=0.0083  Score=54.22  Aligned_cols=157  Identities=14%  Similarity=0.098  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++...  ...+..+.. -+|.   ++++       
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999876  22223334322  123332211 1232   2222       


Q ss_pred             -CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHH---hCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~---~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                       ...|++|..||......   .+   ....+..|+.....+.+.+..   ....+.||++|.-....            +
T Consensus        85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~  152 (260)
T 2ae2_A           85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL------------A  152 (260)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS------------C
T ss_pred             CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc------------C
Confidence             57999999998653211   11   234456676655555555432   12356777776533211            2


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .|..-.++.+......+-+.++..++  +..|++.++.
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  188 (260)
T 2ae2_A          153 VPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGVG  188 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence            22222333333333445566676653  3445544443

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.06  E-value=0.0082  Score=55.50  Aligned_cols=117  Identities=12%  Similarity=0.143  Sum_probs=74.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh------
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al------  110 (356)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++..  .....++.... ...+..+.. -+|.   ++++      
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  8999999862  11222222211 123333211 1232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          111 -TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                       ...|++|..||.....+    .+   ....+..|+.....+.+.+..+- ..+.||++|.
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence             37899999988643211    12   34567788888888888877654 3567777764

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.06  E-value=0.0028  Score=57.44  Aligned_cols=116  Identities=14%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.... ...+..+. .-+|   .+++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  899999876  222223332210 11222221 1122   222333      


Q ss_pred             -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCC
Q 018433          112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP  163 (356)
                       +.|++|..||.....   ..+   ....+..|+.....+.+    .+++. ..+.||++|..
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~  145 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRAR-GGGAIIHNASI  145 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECch
Confidence             799999999864321   112   23345556555444444    44433 34677777643

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.06  E-value=0.0024  Score=58.77  Aligned_cols=116  Identities=17%  Similarity=0.172  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+|   .++++       
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  899999876  222222232211 123333211 122   22222       


Q ss_pred             CCCcEEEEc-CCCCCCC--CCc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 018433          111 TGMDLVIIP-AGVPRKP--GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~-ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  162 (356)
                      .+.|+||.. +|....+  ..+   ....+..|+.....+.+.+...-  ..+.|+++|.
T Consensus       105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS  164 (286)
T 1xu9_A          105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSS  164 (286)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECC
Confidence            379999998 6754321  112   23345566655544444433221  1356777654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.06  E-value=0.0081  Score=54.32  Aligned_cols=116  Identities=10%  Similarity=0.046  Sum_probs=70.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++....  ..+..+.. -+|   .++++       
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999976  333334444322  23333211 122   22223       


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNP  163 (356)
                      ...|++|..||......   .+   ....+..|+.....+.    +.+.+....+.|+++|..
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  144 (257)
T 3imf_A           82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVAT  144 (257)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECch
Confidence            27899999998643211   12   2334556665544444    444445556778877643

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.05  E-value=0.0016  Score=58.87  Aligned_cols=111  Identities=12%  Similarity=0.113  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++.     ..+..+.. -+|   .++++       
T Consensus         6 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (253)
T 1hxh_A            6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999875  222222231     12222111 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      ...|++|..||.....   ..+   ....+..|+.    ..+.+.+.+++..  +.||++|..
T Consensus        79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~  139 (253)
T 1hxh_A           79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASV  139 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcch
Confidence            2469999999865321   112   2344566655    4445555555433  777777654

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.05  E-value=0.0021  Score=57.34  Aligned_cols=115  Identities=18%  Similarity=0.261  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+|   ++++++      
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999887  899999875  222222332200 112222211 122   223343      


Q ss_pred             -CCcEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecC
Q 018433          112 -GMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  162 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tN  162 (356)
                       +.|+||..+|......   .   +....+..|+.....+.+    .+.+. ..+.||++|.
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS  144 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNISS  144 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence             8999999998653211   1   123456677766644444    44433 3456777664

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.0017  Score=65.24  Aligned_cols=100  Identities=13%  Similarity=0.129  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc-CCCCCeEEEEeCCCChhhhhCC---CcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENALTG---MDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a  120 (356)
                      .||+|||+ |.+|.+++..|+..|+  +|+++|+++..  +.++.. ......+.   .++++++++++   +|+||++.
T Consensus        11 ~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~~gi~---~~~s~~e~v~~l~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSK--VDHFLANEAKGKSII---GATSIEDFISKLKRPRKVMLLV   82 (497)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHH--HHHHHHTTTTTSSEE---CCSSHHHHHHTSCSSCEEEECC
T ss_pred             CCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHcccccCCCeE---EeCCHHHHHhcCCCCCEEEEEc
Confidence            48999999 9999999999999988  89999997622  122222 10001233   24577777776   99999985


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                      ..+    .           .+.++++.+..+. |+.+||..+|-....
T Consensus        83 p~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~~~~~~  115 (497)
T 2p4q_A           83 KAG----A-----------PVDALINQIVPLLEKGDIIIDGGNSHFPD  115 (497)
T ss_dssp             CSS----H-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHH
T ss_pred             CCh----H-----------HHHHHHHHHHHhCCCCCEEEECCCCChhH
Confidence            321    1           1344455666555 567777777765433

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=97.04  E-value=0.00073  Score=67.61  Aligned_cols=112  Identities=12%  Similarity=0.051  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-----HHHHHhcC-------CCCCeEEEEeCCCChhh--
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHM-------DTGAVVRGFLGQPQLEN--  108 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g-----~~~dl~~~-------~~~~~v~~~~~t~d~~~--  108 (356)
                      ++++|.|+||+|++|++++..|...+.  +|++++++....     ....+...       .....+..+.  .|+.+  
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~--~Dl~d~~  224 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIV--GDFECMD  224 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEE--EBTTBCS
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEe--cCCcccc
Confidence            457999999999999999999965555  999999876211     11111110       0012344332  12222  


Q ss_pred             ---hhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          109 ---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       109 ---al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                         ++.++|+||.+|+... ......++...|+...+.+++.+.+ . ...++.+|
T Consensus       225 ~l~~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~-~~~~v~iS  277 (508)
T 4f6l_B          225 DVVLPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVS  277 (508)
T ss_dssp             SCCCSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-T-TCEEEEEE
T ss_pred             cCCCccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-C-CCcEEEeC
Confidence               5689999999988642 1223344567899999999999987 3 34455443

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.04  E-value=0.00066  Score=58.85  Aligned_cols=103  Identities=15%  Similarity=0.183  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC---CCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~---~aDiVIi~a  120 (356)
                      +|||.|+||+|.+|++++..|+ .|.  +|+++|++.. ....|+.+            ..+.+++++   ..|+||.++
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~------------~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITN------------IDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTC------------HHHHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCC------------HHHHHHHHHHhCCCCEEEECC
Confidence            4799999999999999999999 776  8999998752 00011111            012223343   489999999


Q ss_pred             CCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecC
Q 018433          121 GVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCCP-NATVNLISN  162 (356)
Q Consensus       121 g~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tN  162 (356)
                      |......   .+   ....+..|+.....+.+.+.+... .+.++++|.
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            8643211   12   234456777777777777766532 356776654

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.04  E-value=0.0028  Score=58.53  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+|   ..++++      
T Consensus        26 ~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (302)
T 1w6u_A           26 GKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVA  102 (302)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999876  222223332210 122332211 122   222333      


Q ss_pred             -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecC
Q 018433          112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN  162 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tN  162 (356)
                       ..|+||..||.....   ..+   ....+..|+.....+.+.+..    ....+.|+++|.
T Consensus       103 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          103 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence             459999999864321   111   234556676666555554433    334567777764

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.03  E-value=0.0014  Score=59.47  Aligned_cols=112  Identities=15%  Similarity=0.175  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-HHHHhcCCCCCeEEEEeCCCC---hhhhh-------CC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQ---LENAL-------TG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~t~d---~~~al-------~~  112 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++..... ..++..    ..+.  ..-+|   .++++       ..
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~~~--~D~~~~~~~~~~~~~~~~~~g~   77 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGG----AFFQ--VDLEDERERVRFVEEAAYALGR   77 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTC----EEEE--CCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhhC----CEEE--eeCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999987  8999998763211 122210    0011  01122   22222       37


Q ss_pred             CcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          113 MDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       113 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                      .|++|..||.....   ..+   ....+..|+.....+.+.+..+   ...+.||++|.-
T Consensus        78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~  137 (256)
T 2d1y_A           78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASV  137 (256)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence            89999999864321   112   2345667776666665554432   235677777654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.03  E-value=0.0069  Score=55.03  Aligned_cols=117  Identities=21%  Similarity=0.180  Sum_probs=69.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al~------  111 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++........+..+.. -+|.   +++++      
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  899999876  2222333332110122222211 1232   22332      


Q ss_pred             -CCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 018433          112 -GMDLVIIPAGVPRKPG----MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                       ..|++|..||.....+    .+   ....+..|+..    .+.+.+.+++.. .+.||++|..
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  153 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASV  153 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcch
Confidence             6899999998653211    12   23345556543    445555555543 4677777654

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.03  E-value=0.00065  Score=61.94  Aligned_cols=99  Identities=15%  Similarity=0.138  Sum_probs=60.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe--CCCChhhhhCCCcEEEEcCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~ag  121 (356)
                      ||.|+||+|++|++++..|+..  +.  +|+.++++.....  ++.+..  ..+....  ...++.++++++|+||.+++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~~--~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQG--ITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHTT--CEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcCC--CeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            5899999999999999999887  65  8999998762211  121111  1111100  01235578899999999987


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ...          ..|+...+.+++.+.+.... .++.+|
T Consensus        75 ~~~----------~~~~~~~~~l~~a~~~~~~~-~~v~~S  103 (286)
T 2zcu_A           75 SEV----------GQRAPQHRNVINAAKAAGVK-FIAYTS  103 (286)
T ss_dssp             -----------------CHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             CCc----------hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            531          14666778888888876533 444443

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.03  E-value=0.0025  Score=56.87  Aligned_cols=143  Identities=17%  Similarity=0.142  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCC---hhhhhC---CCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ---LENALT---GMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d---~~~al~---~aDi  115 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++..  .....++.    ...+... .-+|   .+++++   ..|+
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~~~~~~-D~~~~~~~~~~~~~~~~id~   79 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECP----GIEPVCV-DLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST----TCEEEEC-CTTCHHHHHHHHTTCCCCCE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC----CCCEEEE-eCCCHHHHHHHHHHcCCCCE
Confidence            35899999999999999999999887  8999998751  11111111    1111111 1123   223343   5799


Q ss_pred             EEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHH----hCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433          116 VIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAK----CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       116 VIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~----~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k  185 (356)
                      ||..+|......   .   .....+..|+.....+.+.+.+    ....+.|+++|......            +.++.-
T Consensus        80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~~~~~  147 (244)
T 3d3w_A           80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------AVTNHS  147 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBH
T ss_pred             EEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc------------CCCCCc
Confidence            999998653211   1   1234556676665555544443    33356777776543221            222323


Q ss_pred             EEEechhhHHHHHHHHHHHh
Q 018433          186 LLGVTMLDVVRANTFVAEVL  205 (356)
Q Consensus       186 viG~t~ld~~R~~~~la~~l  205 (356)
                      .++.+......+-+.+++.+
T Consensus       148 ~Y~~sK~a~~~~~~~la~e~  167 (244)
T 3d3w_A          148 VYCSTKGALDMLTKVMALEL  167 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHh
Confidence            34444333345556666665

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.02  E-value=0.013  Score=53.82  Aligned_cols=116  Identities=17%  Similarity=0.203  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  .|++.|++.  +.....++....  ..+..+. .-+|   .+++++      
T Consensus        32 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           32 GKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34899999999999999999999987  899999976  333444444322  1222111 1122   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 018433          112 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  163 (356)
                       ..|++|..||......   .+   ....+..|+...    +...+.+.+....+.|++++.-
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~  170 (276)
T 3r1i_A          108 GGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASM  170 (276)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECch
Confidence             7899999998753221   12   223345565444    4444555554445777777643

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.02  E-value=0.0049  Score=56.51  Aligned_cols=117  Identities=11%  Similarity=0.009  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh------
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al------  110 (356)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++.... ...+..+.. -+|.   ++++      
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALKE  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999987  999999976  233333343211 122222211 1222   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          111 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                       ...|++|..||......   .+   ....+..|+.....+.+.+...   ...+.||++|.
T Consensus       103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  164 (277)
T 4fc7_A          103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITA  164 (277)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECC
T ss_pred             cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence             37899999998643211   12   2345566776666666555332   23567777764

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.02  E-value=0.0062  Score=57.96  Aligned_cols=106  Identities=16%  Similarity=0.134  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-----CChhhhhCCCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~al~~aDiVIi  118 (356)
                      +|+|.|+||+|++|++++..|+..+.  +|+.++++.......++...   ..+..+.+.     .++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~---~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhc---CCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999998876  88999987632222233321   122222111     125667899999998


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      .++...   .      ..|... +.+++.+.+...-..+|.+|...
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCSEEEEEECCC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCccEEEEeCCcc
Confidence            765321   1      124444 77777777765123566666543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.01  E-value=0.0042  Score=56.39  Aligned_cols=115  Identities=16%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCChh---hh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---NA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~~---~a-------l  110 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++....  ..+..+.. -+|.+   ++       +
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999987  899999876  233333443321  22322211 12321   12       2


Q ss_pred             CCCcEEEEcCCCC-CC-C--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVP-RK-P--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~-~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      ...|++|..||.. .. +  ..+   ....+..|+.....+.+.+..+   ...+.||++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  144 (262)
T 1zem_A           83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTAS  144 (262)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            3789999999864 21 1  111   2334556665554444444332   13567777764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.01  E-value=0.0051  Score=55.02  Aligned_cols=115  Identities=22%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~-~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  111 (356)
                      .++|.|+||+|.+|++++..|+..|.  +|+++|++ .  ......++...  ...+..+.. -+|   .+++++     
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999887  89999997 4  22233334322  123333211 122   223344     


Q ss_pred             --CCcEEEEcCCC-CC-CC--CCc---HHHHHHHHHHHHHHHHH----HHHHh----CCCcEEEEecC
Q 018433          112 --GMDLVIIPAGV-PR-KP--GMT---RDDLFNINAGIVRTLCE----GIAKC----CPNATVNLISN  162 (356)
Q Consensus       112 --~aDiVIi~ag~-~~-~~--g~~---r~~~~~~N~~i~~~i~~----~i~~~----~p~a~viv~tN  162 (356)
                        +.|+||..||. .. .+  ..+   ....+..|+.....+.+    .+.+.    .+.+.|++++.
T Consensus        83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (258)
T 3afn_B           83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGS  150 (258)
T ss_dssp             HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecc
Confidence              89999999986 32 11  111   22344556555444444    33322    22367776654

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.01  E-value=0.00059  Score=61.23  Aligned_cols=112  Identities=13%  Similarity=0.058  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh---------CCCc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL---------TGMD  114 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al---------~~aD  114 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++...... .. . ....++..   ..+.++++         ...|
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~-~-~~~~D~~~---~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEAS-AS-V-IVKMTDSF---TEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSS-EE-E-ECCCCSCH---HHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccC-Cc-E-EEEcCCCC---HHHHHHHHHHHHHHhCCCCCC
Confidence            35899999999999999999999887  89999987621100 00 0 00011110   01122222         3789


Q ss_pred             EEEEcCCCCCC----CCCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 018433          115 LVIIPAGVPRK----PGMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  163 (356)
Q Consensus       115 iVIi~ag~~~~----~g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  163 (356)
                      ++|..||....    ...+   ....+..|+.....+.+.+...- ..+.||++|.-
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~  135 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK  135 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCH
Confidence            99999986431    1111   23445677777777776666543 24677777653

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.00  E-value=0.005  Score=54.63  Aligned_cols=115  Identities=16%  Similarity=0.152  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++.... ...+..+. .-+|   .++++       .
T Consensus         3 k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999987  899999876  333333343111 12222221 1122   22233       3


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC--CPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~--~p~a~viv~tN  162 (356)
                      ..|++|..||......   .+   -...+..|+.....+.+.+..+  ...+.+|+++.
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS  138 (235)
T 3l77_A           80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTS  138 (235)
T ss_dssp             SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEec
Confidence            7899999998753211   12   2334556665555554444332  12344555543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.00  E-value=0.0065  Score=55.56  Aligned_cols=116  Identities=16%  Similarity=0.138  Sum_probs=74.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHHHHhcCCCCCeEEEEeC-CCCh--
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFLG-QPQL--  106 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------------~~g~~~dl~~~~~~~~v~~~~~-t~d~--  106 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.              +.....++...  ...+..+.. -+|.  
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCHHH
Confidence            34799999999999999999999987  899999872              11122223322  123332211 1232  


Q ss_pred             -hhhhC-------CCcEEEEcCCCCCCC----CCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 018433          107 -ENALT-------GMDLVIIPAGVPRKP----GMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  163 (356)
Q Consensus       107 -~~al~-------~aDiVIi~ag~~~~~----g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  163 (356)
                       +++++       ..|++|..||.....    .......+..|+.....+.+.+..+- ..+.||++|.-
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence             22232       789999999864321    12234567888888888888887764 45677777653

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.00  E-value=0.0053  Score=55.55  Aligned_cols=117  Identities=19%  Similarity=0.276  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++........+..+.. -+|   .+++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999987  899999876  2222333332100112222211 122   223343      


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      +.|++|..+|......   .+   ....+..|+...    +.+.+.+.+.. .+.||++|..
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  145 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGSV  145 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECch
Confidence            5999999998643211   11   234455666555    44555554433 4677777653

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.99  E-value=0.0037  Score=56.17  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=68.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hh-HHHHHhcCCCCCeEEEEeCCCChhhhh----CCCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG-VTADISHMDTGAVVRGFLGQPQLENAL----TGMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g-~~~dl~~~~~~~~v~~~~~t~d~~~al----~~aDiVI  117 (356)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++..  .. ...|+.+.            .+.++++    ...|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~------------~~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRK------------QAIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCH------------HHHHHHHHHhCCCCCEEE
Confidence            3699999999999999999999887  8999998761  11 11233221            1223334    3459999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCC
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVN  165 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~  165 (356)
                      ..||.....+ .....+..|......+.+.+...   ...+.||++|....
T Consensus        68 ~~Ag~~~~~~-~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  117 (257)
T 1fjh_A           68 LCAGLGPQTK-VLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVAS  117 (257)
T ss_dssp             ECCCCCTTCS-SHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred             ECCCCCCCcc-cHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhh
Confidence            9998754122 24455677776666666555433   23467787765443

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.99  E-value=0.0017  Score=58.78  Aligned_cols=116  Identities=20%  Similarity=0.221  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-----  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|. +.  ......++....  ..+..+.. -+|   +.++++     
T Consensus        21 ~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           21 GKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999987  8999998 33  222233343321  22222211 122   223343     


Q ss_pred             --CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCC
Q 018433          112 --GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNP  163 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNP  163 (356)
                        +.|+||..+|.....   ..+   ....+..|+.....+.+.+.+... .+.||++|..
T Consensus        97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~  157 (274)
T 1ja9_A           97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI  157 (274)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcCh
Confidence              789999999865321   111   234567788877788777766532 3677777643

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.013  Score=53.79  Aligned_cols=146  Identities=16%  Similarity=0.148  Sum_probs=82.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.   ......++.... ...+..+.. -+|   .++++       
T Consensus        26 k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           26 KTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            4799999999999999999999997  999999854   233333443321 123333211 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ...|++|..||......   .+   ....+..|+.....+.+.    +.+. ..+.||++|......            +
T Consensus       103 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------~  169 (281)
T 3v2h_A          103 GGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK-GWGRIINIASAHGLV------------A  169 (281)
T ss_dssp             SSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------C
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCccccc------------C
Confidence            37899999998753221   12   233456666555555444    4443 356777776533221            2


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhC
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                      .|..-.++.+......+-+.++..++
T Consensus       170 ~~~~~~Y~asKaa~~~l~~~la~e~~  195 (281)
T 3v2h_A          170 SPFKSAYVAAKHGIMGLTKTVALEVA  195 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhh
Confidence            22222333333333446666777763

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.99  E-value=0.0032  Score=55.87  Aligned_cols=154  Identities=16%  Similarity=0.116  Sum_probs=84.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCC----cEEEE
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQLENALTGM----DLVII  118 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~a----DiVIi  118 (356)
                      +|.|+||+|.+|..++..|+..|.  +|++.|++.  +.....++.. .. ..+.. .+...+.+++++..    |++|.
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~D~~~~~~v~~~~~~~~~~~d~lv~   78 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLSN-NV-GYRARDLASHQEVEQLFEQLDSIPSTVVH   78 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCSS-CC-CEEECCTTCHHHHHHHHHSCSSCCSEEEE
T ss_pred             EEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhh-cc-CeEeecCCCHHHHHHHHHHHhhcCCEEEE
Confidence            589999999999999999999987  899999876  2222222211 00 01110 00011223334333    89999


Q ss_pred             cCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-C-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          119 PAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       119 ~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      .||......   .+   ....+..|+.....+.+.+...- . ...||++|......            +.+..-.++.+
T Consensus        79 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~------------~~~~~~~Y~as  146 (230)
T 3guy_A           79 SAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ------------PKAQESTYCAV  146 (230)
T ss_dssp             CCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS------------CCTTCHHHHHH
T ss_pred             eCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC------------CCCCCchhHHH
Confidence            998653221   12   23456677776666666665542 1 23666665433211            22222233443


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ......+-+.++..++  +..|++..+
T Consensus       147 Kaa~~~~~~~la~e~~--~~gi~v~~v  171 (230)
T 3guy_A          147 KWAVKGLIESVRLELK--GKPMKIIAV  171 (230)
T ss_dssp             HHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHH--hcCeEEEEE
Confidence            3334456677777774  444544433

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.99  E-value=0.0073  Score=55.42  Aligned_cols=117  Identities=15%  Similarity=0.124  Sum_probs=69.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------------------chhHHHHHhcCCCCCeEEEEeC-CC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------------------TPGVTADISHMDTGAVVRGFLG-QP  104 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~------------------~~g~~~dl~~~~~~~~v~~~~~-t~  104 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  .|+++|++.                  +......+...  ...+..+.. -+
T Consensus        11 ~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   86 (286)
T 3uve_A           11 GKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVDVR   86 (286)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcCCC
Confidence            45899999999999999999999997  899999862                  11112222222  123333211 12


Q ss_pred             Ch---hhhh-------CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 018433          105 QL---ENAL-------TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       105 d~---~~al-------~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP  163 (356)
                      |.   ++++       ...|++|..||......    .+   ....+..|+.....    ..+.+.+....+.||++|..
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV  166 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence            32   2222       37899999999743322    12   23345566554444    44455554556788887654


Q ss_pred             C
Q 018433          164 V  164 (356)
Q Consensus       164 v  164 (356)
                      .
T Consensus       167 ~  167 (286)
T 3uve_A          167 G  167 (286)
T ss_dssp             G
T ss_pred             h
Confidence            3

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.98  E-value=0.0025  Score=58.51  Aligned_cols=155  Identities=8%  Similarity=0.100  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++....  ..+..+.. -+|   .+++++      
T Consensus        26 gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           26 GRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            34789999999999999999999987  899999876  333344444322  22222211 122   222333      


Q ss_pred             -CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                       ..|++|..||......   .+   ....+..|+.....+    .+.+.+. ..+.||++|......            +
T Consensus       102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iV~isS~~~~~------------~  168 (271)
T 4ibo_A          102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR-GYGKIVNIGSLTSEL------------A  168 (271)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------B
T ss_pred             CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEccHHhCC------------C
Confidence             7899999998753221   12   233456666555554    4444433 346777776533211            2


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       169 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (271)
T 4ibo_A          169 RATVAPYTVAKGGIKMLTRAMAAEWA--QYGIQANAI  203 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            22222334433333456667777763  344544443

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.98  E-value=0.0035  Score=55.79  Aligned_cols=115  Identities=21%  Similarity=0.265  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      ++|.|+||+|.+|.+++..|+..|.  ++++. +++.  ......++...  ...+..+.. -+|   .+++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999987  78884 6654  22222233321  123332211 122   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          112 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                       +.|+||..||......   .+   ....+..|+.....+.+.+.++   ...+.||++|..
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  139 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASV  139 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECCh
Confidence             7899999998754211   11   2345566766655555554433   235677777653

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=96.97  E-value=0.00061  Score=63.16  Aligned_cols=163  Identities=15%  Similarity=0.188  Sum_probs=89.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhC--CCcEEEEcC
Q 018433           46 KVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVIIPA  120 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi~a  120 (356)
                      ||.|+||+|++|++++..|+..  +.  +|+.+|++.....     ..   ..+.. .....++.++++  ++|+||.++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~~---~~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----GI---KFITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----TC---CEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----Cc---eEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            6899999999999999999876  55  8899987651110     10   11111 000123445666  899999999


Q ss_pred             CCCCCCC-CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHH
Q 018433          121 GVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANT  199 (356)
Q Consensus       121 g~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~  199 (356)
                      +...... ....+.+..|+.....+++.+.+.... .+|++|...-.-...-.....+.....+...+|.+.....++-.
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~  149 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQ  149 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHHHHH
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHHHHHH
Confidence            8542111 233456788999999999998876543 45554321100000000000000111123344555444445555


Q ss_pred             HHHHHhCCCCCCCc-ccEEec
Q 018433          200 FVAEVLGLDPRDVD-VPVVGG  219 (356)
Q Consensus       200 ~la~~l~v~~~~v~-~~viG~  219 (356)
                      .+++..|++...++ ..++|.
T Consensus       150 ~~~~~~~~~~~~lR~~~~~g~  170 (317)
T 3ajr_A          150 YYYEKFGLDVRSLRYPGIISY  170 (317)
T ss_dssp             HHHHHHCCEEEEEEECEEECS
T ss_pred             HHHHhcCCeEEEEecCcEecc
Confidence            55666677655554 556664

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.97  E-value=0.0012  Score=59.26  Aligned_cols=113  Identities=12%  Similarity=0.088  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++..     .+..+.. -+|   .++++       
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999987  899999976  2323333321     1222111 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP  163 (356)
                      ...|++|..||.....   ..+   ....+..|+.....+.+.+...-  ..+.|+++|.-
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~  136 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSS  136 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCH
Confidence            3679999999874321   112   23456677776666655554332  23467776543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.97  E-value=0.0011  Score=59.97  Aligned_cols=153  Identities=17%  Similarity=0.194  Sum_probs=84.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++..     .+..+. .-+|   .+++++      
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGD-----AALAVAADISKEADVDAAVEAALSKF   81 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999987  899999976  2222233311     122211 1122   222333      


Q ss_pred             -CCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHH----HHHHHHHHHHhC---CCcEEEEecCCCCccHHHHHHHHH
Q 018433          112 -GMDLVIIPAGVPRKPG----MT---RDDLFNINAGI----VRTLCEGIAKCC---PNATVNLISNPVNSTVPIAAEVFK  176 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~---p~a~viv~tNPv~~~t~~~~~~~~  176 (356)
                       ..|++|..||....++    .+   ....+..|+..    .+.+.+.+.+..   ..+.|+++|......         
T Consensus        82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------  152 (261)
T 3n74_A           82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR---------  152 (261)
T ss_dssp             SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS---------
T ss_pred             CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC---------
Confidence             7899999998754222    12   22334455544    445555555432   256677776543321         


Q ss_pred             HhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          177 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       177 ~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                         +.|..-.++.+......+-+.++..+.  +..|++..+
T Consensus       153 ---~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  188 (261)
T 3n74_A          153 ---PRPNLAWYNATKGWVVSVTKALAIELA--PAKIRVVAL  188 (261)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ---CCCCccHHHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence               122222233333333445666777663  334544443

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.97  E-value=0.0011  Score=59.94  Aligned_cols=151  Identities=15%  Similarity=0.175  Sum_probs=82.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++.     ..+..+. .-+|   .++++       .
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3789999999999999999999987  899999875  222222232     1122111 1122   22222       2


Q ss_pred             CCcEEEEcCCCCC--CC--CCc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 GMDLVIIPAGVPR--KP--GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 ~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ..|++|..||...  .+  ..+   ....+..|+...    +...+.+.+. ..+.||++|......            +
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~------------~  140 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGSTAGSW------------P  140 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTS------------C
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEccchhcc------------C
Confidence            6899999998752  11  112   233456665544    4444444443 356777776543211            2


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .|..-.++.+......+-+.++..++  +..|++..+
T Consensus       141 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  175 (248)
T 3asu_A          141 YAGGNVYGATKAFVRQFSLNLRTDLH--GTAVRVTDI  175 (248)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            22222333333333345566676653  455654444

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.97  E-value=0.013  Score=53.44  Aligned_cols=116  Identities=14%  Similarity=0.139  Sum_probs=68.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++.... ...+..+.. -+|.   ++++       .
T Consensus        22 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (267)
T 1vl8_A           22 RVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKFG   98 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999987  899999876  222233331110 112222211 1222   2222       3


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                      ..|++|..||......   .+   ....+..|+.....+.+.+..+   ...+.||++|.-
T Consensus        99 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~  159 (267)
T 1vl8_A           99 KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  159 (267)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence            7899999998753211   12   2344566766665555544332   234677777653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.97  E-value=0.011  Score=54.35  Aligned_cols=152  Identities=15%  Similarity=0.133  Sum_probs=84.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++.     ..+..+. .-+|.   +++       +
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIG-----CGAAACRVDVSDEQQIIAMVDACVAAF  101 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----SSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CcceEEEecCCCHHHHHHHHHHHHHHc
Confidence            34789999999999999999999987  999999876  222233331     1111111 11232   122       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ...|++|..||.....   ..+   ....+..|+.....+.+.+...   ...+.||++|......            +.
T Consensus       102 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~------------~~  169 (277)
T 3gvc_A          102 GGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV------------AV  169 (277)
T ss_dssp             SSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS------------CC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc------------CC
Confidence            3789999999874321   122   2345566776655555444332   3467788776543221            22


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  216 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~v  216 (356)
                      +..-.++.+......+-+.+|..++  +..|++.+
T Consensus       170 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~  202 (277)
T 3gvc_A          170 GGTGAYGMSKAGIIQLSRITAAELR--SSGIRSNT  202 (277)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEE
Confidence            2222333333333445666777663  33444333

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.97  E-value=0.0076  Score=54.46  Aligned_cols=114  Identities=12%  Similarity=0.092  Sum_probs=69.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++....  ..+..+.. -+|   .+++++      
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            35799999999999999999999987  899999986  344444454332  23333221 123   222333      


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ..|++|..||......   .+   -...+..|+...    +.+.+.+++. ..+.||++|.
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  142 (252)
T 3h7a_A           83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAH-GQGKIFFTGA  142 (252)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEE
T ss_pred             CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECC
Confidence            5699999998753211   12   233455565444    4444445544 3567777754

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.96  E-value=0.0086  Score=54.68  Aligned_cols=116  Identities=14%  Similarity=0.104  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++....  ..+..+.. -+|.   ++++       
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           21 GTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   96 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999876  222233333221  22222211 1222   2222       


Q ss_pred             -CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 018433          111 -TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPV  164 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv  164 (356)
                       ...|++|..||.....   ..+   ....+..|+.....+.+.    +++. ..+.||++|...
T Consensus        97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~  160 (273)
T 1ae1_A           97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIA  160 (273)
T ss_dssp             TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGG
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHh
Confidence             5789999999864321   112   233445566555444444    3433 356777776543

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.96  E-value=0.0069  Score=54.47  Aligned_cols=156  Identities=13%  Similarity=0.108  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-----
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-----  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-----  110 (356)
                      +.++|.|+||+|.+|.+++..|+..|.  .+++.|. +.  ......++....  ..+..+. .-+|   .++++     
T Consensus        12 ~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (256)
T 3ezl_A           12 SQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALG--FDFYASEGNVGDWDSTKQAFDKVKA   87 (256)
T ss_dssp             -CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeeEEEecCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8888884 33  223333343322  1222211 1122   22233     


Q ss_pred             --CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHh
Q 018433          111 --TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  178 (356)
Q Consensus       111 --~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~  178 (356)
                        ...|++|..||.....   ..+   ....+..|+...    +.+.+.+.+. ..+.|+++|......           
T Consensus        88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~-----------  155 (256)
T 3ezl_A           88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISSVNGQK-----------  155 (256)
T ss_dssp             HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCCGGG-----------
T ss_pred             hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcchhhcc-----------
Confidence              3679999999865321   122   234556666664    4444445544 346777777654322           


Q ss_pred             CCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          179 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       179 ~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                       +.+..-.++.+......+-+.++..+.  +..|++.++
T Consensus       156 -~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  191 (256)
T 3ezl_A          156 -GQFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVTVNTV  191 (256)
T ss_dssp             -SCSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCCCcccHHHHHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence             233333344443333445666677663  334444333

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.96  E-value=0.007  Score=55.32  Aligned_cols=155  Identities=19%  Similarity=0.198  Sum_probs=84.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al------  110 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  .|++.|...   ......++....  ..+..+. .-+|.   ++++      
T Consensus        28 ~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           28 DRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIER  103 (269)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999999987  889998854   222333343322  2222221 11232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                       ...|++|..||......   .+   ....+..|+.....+.+.    +.+. ..+.||++|.-..           . .
T Consensus       104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~-~  170 (269)
T 4dmm_A          104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ-RSGRIINIASVVG-----------E-M  170 (269)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCHHH-----------H-H
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECchhh-----------c-C
Confidence             27899999998753221   12   233455666554444444    4433 3567777764211           0 1


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +.+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       171 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  206 (269)
T 4dmm_A          171 GNPGQANYSAAKAGVIGLTKTVAKELA--SRGITVNAV  206 (269)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            233333344443333446666777763  334544433

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.95  E-value=0.0057  Score=55.91  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------hC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l~  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++....  ..+..+. .-+|.   +++       +.
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999987  899999876  333444454332  2322221 11222   122       23


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNP  163 (356)
                      ..|++|..||......   .+   ....+..|+....    .+.+.+++. ..+.||++|.-
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~  141 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINIGSI  141 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEEcCH
Confidence            7899999998753211   12   2334556665554    444444433 45777777653

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0081  Score=55.55  Aligned_cols=181  Identities=15%  Similarity=0.141  Sum_probs=91.9

Q ss_pred             HhccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC--chhHHHHHhcC
Q 018433           15 SAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN--TPGVTADISHM   91 (356)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~--~~g~~~dl~~~   91 (356)
                      |..|-|-..+|.....-.+..       +.+++.|+||+|.+|..++..|+..|. ...|++.|++.  +.....++...
T Consensus        11 ~~~~~~~~~~m~~~~~~~~~l-------~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~   83 (287)
T 3rku_A           11 SSFLVPRGSHMSQGRKAAERL-------AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQE   83 (287)
T ss_dssp             ---------CCTTCHHHHHHH-------TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cceeeecCcccccCccchhhc-------CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhh
Confidence            344666666666443221111       234799999999999999999987653 34899999876  33333344322


Q ss_pred             CCCCeEEEEeC----CCChhhhh-------CCCcEEEEcCCCCCCC----CCc---HHHHHHHHHHHHHHHHHHH----H
Q 018433           92 DTGAVVRGFLG----QPQLENAL-------TGMDLVIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGI----A  149 (356)
Q Consensus        92 ~~~~~v~~~~~----t~d~~~al-------~~aDiVIi~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i----~  149 (356)
                      .....+..+..    ..+.++++       ...|++|..||.....    ..+   ....+..|+.....+.+.+    +
T Consensus        84 ~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~  163 (287)
T 3rku_A           84 FPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQ  163 (287)
T ss_dssp             CTTCEEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11223332211    12222233       3689999999864311    112   2344566665555555444    4


Q ss_pred             HhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          150 KCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       150 ~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +. ..+.||++|.-....            +.|..-.++.+......+-+.++..++  +..|++..+
T Consensus       164 ~~-~~g~IV~isS~~~~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  216 (287)
T 3rku_A          164 AK-NSGDIVNLGSIAGRD------------AYPTGSIYCASKFAVGAFTDSLRKELI--NTKIRVILI  216 (287)
T ss_dssp             HH-TCCEEEEECCGGGTS------------CCTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             hc-CCCeEEEECChhhcC------------CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEEEEE
Confidence            43 456777776533221            233322333433333456677777764  445554443

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.95  E-value=0.0017  Score=60.47  Aligned_cols=97  Identities=12%  Similarity=0.109  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-----C-CCcEEEEEeCCCchhHHHHHhc-CCC---C--C-----eEEEEeCCCCh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKIN-----P-LVSVLHLYDVVNTPGVTADISH-MDT---G--A-----VVRGFLGQPQL  106 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~-----~-~~~el~L~D~~~~~g~~~dl~~-~~~---~--~-----~v~~~~~t~d~  106 (356)
                      +|||+|||+ |.+|+.++..|...     + .  +|.++|+ .  .....+.+ ...   .  .     .+..   +++.
T Consensus         8 ~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~   78 (317)
T 2qyt_A            8 PIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPTCV---TDNP   78 (317)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCSEE---ESCH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecceE---ecCc
Confidence            479999999 99999999999877     6 5  9999997 3  22222322 110   0  0     0111   1343


Q ss_pred             hhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433          107 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  166 (356)
Q Consensus       107 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~  166 (356)
                       ++++++|+||++....    .            +.++++.+..+- |+..|+.++|..+.
T Consensus        79 -~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           79 -AEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             -HHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             -cccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence             5678999999985322    1            234445555543 56777777887654

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.94  E-value=0.0022  Score=58.54  Aligned_cols=116  Identities=13%  Similarity=0.182  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  .......+....  ..+..+.. -+|   .+++++      
T Consensus        34 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           34 GKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPKSVEETISQQEKDF  109 (279)
T ss_dssp             TCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999998887  899999876  222222222111  12222211 122   223333      


Q ss_pred             -CCcEEEEcCCCCCC--C---CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 018433          112 -GMDLVIIPAGVPRK--P---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       112 -~aDiVIi~ag~~~~--~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                       ..|+||..+|....  +   ..+   ....+..|+..    .+.+.+.+++.. .+.||++|...
T Consensus       110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~  174 (279)
T 3ctm_A          110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSIS  174 (279)
T ss_dssp             SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCCT
T ss_pred             CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECchH
Confidence             48999999886432  1   111   12345566665    566666666543 45667776543

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.93  E-value=0.0051  Score=56.56  Aligned_cols=156  Identities=13%  Similarity=0.132  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QP---QLENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~-----  111 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  +|+++|.+.   ......++....  ..+..+.. -+   +.+++++     
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999988  899999754   233333444322  22332211 12   2233333     


Q ss_pred             --CCcEEEEcCCCC--C-CC--CCc---HHHHHHHHHH----HHHHHHHHHHHhCC--CcEEEEecCCCCccHHHHHHHH
Q 018433          112 --GMDLVIIPAGVP--R-KP--GMT---RDDLFNINAG----IVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVF  175 (356)
Q Consensus       112 --~aDiVIi~ag~~--~-~~--g~~---r~~~~~~N~~----i~~~i~~~i~~~~p--~a~viv~tNPv~~~t~~~~~~~  175 (356)
                        ..|++|..||..  . .+  ..+   ....+..|+.    ..+...+.+.+...  .+.||++|.-....        
T Consensus       105 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------  176 (280)
T 4da9_A          105 FGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM--------  176 (280)
T ss_dssp             HSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC------------
T ss_pred             cCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc--------
Confidence              789999999872  1 11  112   2233344554    44555555555442  56788877544322        


Q ss_pred             HHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          176 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       176 ~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                          +.|..-.++.+......+-+.+|..++  +..|++..+
T Consensus       177 ----~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  212 (280)
T 4da9_A          177 ----TSPERLDYCMSKAGLAAFSQGLALRLA--ETGIAVFEV  212 (280)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             ----CCCCccHHHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence                122222233333333456667777763  445554444

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.93  E-value=0.0072  Score=55.40  Aligned_cols=114  Identities=18%  Similarity=0.160  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhCC------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALTG------  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~~------  112 (356)
                      +++.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++...   ..+..+.. -+|   .+++++.      
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            3799999999999999999999987  899999876  23233334321   12222211 122   2233443      


Q ss_pred             -CcEEEEcCCCCCC--C--CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 018433          113 -MDLVIIPAGVPRK--P--GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       113 -aDiVIi~ag~~~~--~--g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                       .|++|..+|....  +  ..+   ....+..|+..    .+.+.+.+.+......||++|.-
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~  159 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSV  159 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence             4999999987532  1  111   23345556555    44555555554433277777643

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.93  E-value=0.0037  Score=56.90  Aligned_cols=74  Identities=18%  Similarity=0.259  Sum_probs=48.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-------------------chhH--HHHHhcCCCCCeEEEEeCC-
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------------------TPGV--TADISHMDTGAVVRGFLGQ-  103 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-------------------~~g~--~~dl~~~~~~~~v~~~~~t-  103 (356)
                      ||+|+|+ |.+|+.++..|+..|. .+|.++|.+.                   .+..  +..+.+......+..+... 
T Consensus        33 ~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~  110 (249)
T 1jw9_B           33 RVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL  110 (249)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred             eEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            8999999 9999999999998875 4999999875                   1121  1223332222344443211 


Q ss_pred             --CChhhhhCCCcEEEEcCC
Q 018433          104 --PQLENALTGMDLVIIPAG  121 (356)
Q Consensus       104 --~d~~~al~~aDiVIi~ag  121 (356)
                        .+..+.++++|+||.+..
T Consensus       111 ~~~~~~~~~~~~DvVi~~~d  130 (249)
T 1jw9_B          111 DDAELAALIAEHDLVLDCTD  130 (249)
T ss_dssp             CHHHHHHHHHTSSEEEECCS
T ss_pred             CHhHHHHHHhCCCEEEEeCC
Confidence              123456789999999853

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.92  E-value=0.0022  Score=52.72  Aligned_cols=98  Identities=9%  Similarity=0.053  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh---hh-hhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---EN-ALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~~-al~~aDiVIi~  119 (356)
                      ..+|.|+|+ |.+|..++..|...+.  +++++|.++.  ....+.+..  ..+- ....++.   ++ .+.+||+||++
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~--~~~~~~~~g--~~~i-~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRT--RVDELRERG--VRAV-LGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHH--HHHHHHHTT--CEEE-ESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHH--HHHHHHHcC--CCEE-ECCCCCHHHHHhcCcccCCEEEEE
Confidence            358999999 9999999999998887  9999999862  112222221  1221 1111232   11 25789999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV  164 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv  164 (356)
                      .+..           ..|..    ++..+++.+|+..++.-. +|.
T Consensus        79 ~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~~~~  109 (140)
T 3fwz_A           79 IPNG-----------YEAGE----IVASARAKNPDIEIIARAHYDD  109 (140)
T ss_dssp             CSCH-----------HHHHH----HHHHHHHHCSSSEEEEEESSHH
T ss_pred             CCCh-----------HHHHH----HHHHHHHHCCCCeEEEEECCHH
Confidence            5421           33433    344566778888776655 443

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.92  E-value=0.0084  Score=54.72  Aligned_cols=118  Identities=20%  Similarity=0.251  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHHHHhcCCCCCeEEEEeC-CCC--
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFLG-QPQ--  105 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------------~~g~~~dl~~~~~~~~v~~~~~-t~d--  105 (356)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++.              +.....++...  ...+..+.. -+|  
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCCCHH
Confidence            345899999999999999999999988  899999862              11112222221  122332211 122  


Q ss_pred             -hhhhhC-------CCcEEEEcCCCCCCCC-C-cHHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCCC
Q 018433          106 -LENALT-------GMDLVIIPAGVPRKPG-M-TRDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       106 -~~~al~-------~aDiVIi~ag~~~~~g-~-~r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNPv  164 (356)
                       .+++++       ..|++|..||...... . +....+..|+....    ...+.+.+....+.||++|.-.
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  160 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSA  160 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Confidence             222333       7899999998753221 1 12344556655444    4444455555567888876543

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.91  E-value=0.0019  Score=61.83  Aligned_cols=89  Identities=20%  Similarity=0.260  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhC----CCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALT----GMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~----~aDiVIi  118 (356)
                      .+||+|||+ |.+|.+++..|...|.  +|+++|.++ ....+.+   ..  .  ..   ++++.++++    +||+||+
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a~~---~G--~--~~---~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKSAVD---EG--F--DV---SADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHH---TT--C--CE---ESCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH---cC--C--ee---eCCHHHHHHhcccCCCEEEE
Confidence            469999999 9999999999998886  899999875 1112221   11  1  11   135556555    5799999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +.  |              ...+.++.+.+..+.|+++|+.++
T Consensus        75 av--P--------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           75 AV--P--------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             CS--C--------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             eC--C--------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            85  2              112334444555556777766654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.90  E-value=0.011  Score=54.13  Aligned_cols=117  Identities=16%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-------------C--chhHHHHHhcCCCCCeEEEEe-CCCCh-
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-------------N--TPGVTADISHMDTGAVVRGFL-GQPQL-  106 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~-------------~--~~g~~~dl~~~~~~~~v~~~~-~t~d~-  106 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  +|+++|++             .  +.....++....  ..+..+. .-+|. 
T Consensus        15 gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~   90 (280)
T 3pgx_A           15 GRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDDA   90 (280)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHH
Confidence            35799999999999999999999988  99999983             1  122223333321  2222221 11232 


Q ss_pred             --hhhh-------CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 018433          107 --ENAL-------TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       107 --~~al-------~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                        ++.+       ...|++|..||......   .+   ....+..|+..    .+...+.+.+....+.||++|...
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  167 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSA  167 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchh
Confidence              2222       37899999998753211   12   22344556544    444555555555567788876543

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.89  E-value=0.0011  Score=60.39  Aligned_cols=64  Identities=16%  Similarity=0.204  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||+ |.+|..++..|...++  +|+++|.........++....  ..       +++.+++++||+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g--~~-------~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG--VT-------ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT--CE-------ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC--Cc-------CCHHHHHhcCCEEEEEC
Confidence            69999999 9999999999998887  888888732222222232211  11       23467789999999985

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.89  E-value=0.0098  Score=52.76  Aligned_cols=116  Identities=19%  Similarity=0.221  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeCCCCh---hhh-------hC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLGQPQL---ENA-------LT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~---~~a-------l~  111 (356)
                      ++|.|+||+|.+|.+++..|+..|.  +|+++ +++.  ......++.........-....-+|.   +++       +.
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999887  88887 6654  22222333322111111011111232   222       34


Q ss_pred             CCcEEEEcCCCCCCC---CC---cHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGVPRKP---GM---TRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~---g~---~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      +.|+||..||.....   ..   +....+..|+..    .+.+.+.+++. ..+.||++|..
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~sS~  140 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA-RFGRIVNITSV  140 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCCEEEEEeCh
Confidence            799999999865321   11   123455667666    55555555544 34677777653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.88  E-value=0.015  Score=52.77  Aligned_cols=118  Identities=12%  Similarity=0.068  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  .|++.|++.  +.....++........+..+. .-+|.   ++.       +
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  899999876  333334443311112232221 11232   112       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                      ...|++|..||.....   ..+   ....+..|+.....+.+.+..+   ...+.||++|..
T Consensus        86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~  147 (265)
T 3lf2_A           86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSL  147 (265)
T ss_dssp             CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCc
Confidence            3679999999864321   122   2345667776666666665443   235677777643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.88  E-value=0.0017  Score=53.16  Aligned_cols=70  Identities=11%  Similarity=0.091  Sum_probs=45.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh---hh-hhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---EN-ALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~~-al~~aDiVIi~  119 (356)
                      +++|.|+|+ |.+|+.++..|...|.  +++++|.++.  ....+.+..  ..+... ..+|.   ++ .+.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~--~~~~~~~~~--~~~~~g-d~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKE--KIELLEDEG--FDAVIA-DPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHH--HHHHHHHTT--CEEEEC-CTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHH--HHHHHHHCC--CcEEEC-CCCCHHHHHhCCcccCCEEEEe
Confidence            458999999 9999999999999887  9999999762  112222221  121111 12332   11 24689999998


Q ss_pred             CC
Q 018433          120 AG  121 (356)
Q Consensus       120 ag  121 (356)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.87  E-value=0.0035  Score=56.86  Aligned_cols=153  Identities=17%  Similarity=0.207  Sum_probs=89.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh----------hhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~----------~al  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++  +.....++.     ..+..+. .-+|.+          +.+
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999987  999999876  222222221     1222211 112321          223


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      ...|++|..||......   .+   ....+..|+.....+.+.+..+- ..+.|+++|......            +.|.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~  148 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG------------GHPG  148 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS------------BCTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC------------CCCC
Confidence            47899999998754221   12   33456788887777777776553 356788876544321            2222


Q ss_pred             CCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       184 ~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .-.++.+......+-+.++..++  +..|++..+
T Consensus       149 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  180 (255)
T 4eso_A          149 MSVYSASKAALVSFASVLAAELL--PRGIRVNSV  180 (255)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTG--GGTCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            22333333333445666777763  344544433

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.87  E-value=0.0093  Score=55.29  Aligned_cols=117  Identities=16%  Similarity=0.164  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHHHHhcCCCCCeEEEEeC-CCCh--
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFLG-QPQL--  106 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------------~~g~~~dl~~~~~~~~v~~~~~-t~d~--  106 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  .|+++|++.              +.....++....  ..+..+.. -+|.  
T Consensus        28 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           28 GKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDA  103 (299)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHH
Confidence            35799999999999999999999988  899999862              111222333221  22322211 1232  


Q ss_pred             -hhhh-------CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCCC
Q 018433          107 -ENAL-------TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPV  164 (356)
Q Consensus       107 -~~al-------~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNPv  164 (356)
                       ++++       ...|++|..||......    .+   ....+..|+.....+.+    .+.+....+.||++|.-.
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~  180 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIG  180 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence             2222       37899999998643211    22   23445666654444444    444444567888876543

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.87  E-value=0.003  Score=57.52  Aligned_cols=153  Identities=12%  Similarity=0.031  Sum_probs=84.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh---hhhh-------CCCc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---ENAL-------TGMD  114 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~~al-------~~aD  114 (356)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.... ...+.+... ..+..  .-+|.   ++++       ...|
T Consensus        28 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~-~~~~~--Dv~~~~~v~~~~~~~~~~~g~iD  101 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAGA-VALYG--DFSCETGIMAFIDLLKTQTSSLR  101 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHTC-EEEEC--CTTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcCC-eEEEC--CCCCHHHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999999987  899999986221 112221110 01110  11221   1222       3789


Q ss_pred             EEEEcCCCCCCC--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCE
Q 018433          115 LVIIPAGVPRKP--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  186 (356)
Q Consensus       115 iVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kv  186 (356)
                      ++|..||.....  ..+   ....+..|+.....+.+.+..+   ...+.||++|......            +.+..-.
T Consensus       102 ~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------------~~~~~~~  169 (260)
T 3gem_A          102 AVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK------------GSSKHIA  169 (260)
T ss_dssp             EEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT------------CCSSCHH
T ss_pred             EEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC------------CCCCcHh
Confidence            999999864322  222   2234566666555555544332   2346777776533211            2332233


Q ss_pred             EEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          187 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       187 iG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      ++.+......+-+.+|..++-   .|++..+.
T Consensus       170 Y~asKaa~~~l~~~la~e~~~---~Irvn~v~  198 (260)
T 3gem_A          170 YCATKAGLESLTLSFAARFAP---LVKVNGIA  198 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT---TCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCC---CCEEEEEe
Confidence            344433344566777777752   26554443

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.87  E-value=0.01  Score=53.90  Aligned_cols=146  Identities=13%  Similarity=0.070  Sum_probs=83.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~a  113 (356)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|++...+           ..+..+. .-+|   .++++       ...
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~-----------~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   75 (264)
T 2dtx_A            9 KVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGE-----------AKYDHIECDVTNPDQVKASIDHIFKEYGSI   75 (264)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCS-----------CSSEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccC-----------CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999987  899999875220           0111110 0112   22222       379


Q ss_pred             cEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          114 DLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       114 DiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      |++|..||.....   ..+   ....+..|+.....+.+.+...   ...+.||++|.-....            +.+..
T Consensus        76 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~  143 (264)
T 2dtx_A           76 SVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI------------ITKNA  143 (264)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS------------CCTTB
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc------------CCCCc
Confidence            9999999864321   112   2345667776655555555443   2346777776543211            22222


Q ss_pred             CEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          185 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       185 kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      -.++.+......+-+.++..++  +. |++.++.
T Consensus       144 ~~Y~~sK~a~~~~~~~la~e~~--~~-i~vn~v~  174 (264)
T 2dtx_A          144 SAYVTSKHAVIGLTKSIALDYA--PL-LRCNAVC  174 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--TT-SEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHhc--CC-cEEEEEE
Confidence            2333333333455666777775  33 6555554

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.87  E-value=0.0055  Score=56.77  Aligned_cols=147  Identities=12%  Similarity=0.090  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------
Q 018433           44 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  110 (356)
                      .+++.|+||+|.  +|.+++..|+..|.  +|++.|+++ ......++.....  .+..+. .-+|   .++++      
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHh
Confidence            347999999878  99999999999987  899999875 2222222222111  122211 1122   22222      


Q ss_pred             -CCCcEEEEcCCCCC-----CC--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHh
Q 018433          111 -TGMDLVIIPAGVPR-----KP--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA  178 (356)
Q Consensus       111 -~~aDiVIi~ag~~~-----~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~  178 (356)
                       ...|++|..||...     .+  ..+   ....+..|+.....+.+.+..+- ..+.||++|......           
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~-----------  175 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK-----------  175 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-----------
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-----------
Confidence             37899999999753     11  112   23456778777777777776654 367888876543221           


Q ss_pred             CCCCCCCEEEechhhHHHHHHHHHHHhC
Q 018433          179 GTYDPKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       179 ~~~~~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                       +.+..-.++.+......+-+.+|..++
T Consensus       176 -~~~~~~~Y~asKaa~~~l~~~la~e~~  202 (293)
T 3grk_A          176 -VMPNYNVMGVAKAALEASVKYLAVDLG  202 (293)
T ss_dssp             -BCTTTTHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence             223333344443334456667777764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.86  E-value=0.0017  Score=59.79  Aligned_cols=90  Identities=18%  Similarity=0.142  Sum_probs=58.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHH---HHhcCCCCCeEEEEeC----CCChhhhhCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTA---DISHMDTGAVVRGFLG----QPQLENALTG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~----~g~~~---dl~~~~~~~~v~~~~~----t~d~~~al~~  112 (356)
                      ++||.|+||+|++|++++..|+..|.  +++.++++..    .....   .+...    .+..+.+    ..++.+++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~~----~v~~v~~D~~d~~~l~~~~~~   77 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKAS----GANIVHGSIDDHASLVEAVKN   77 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTT----TCEEECCCTTCHHHHHHHHHT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHhC----CCEEEEeccCCHHHHHHHHcC
Confidence            46899999999999999999998886  8888988741    11111   22221    1222111    1235678899


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  152 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  152 (356)
                      +|+||.+++...             ....+.+++.+++..
T Consensus        78 ~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (308)
T 1qyc_A           78 VDVVISTVGSLQ-------------IESQVNIIKAIKEVG  104 (308)
T ss_dssp             CSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             CCEEEECCcchh-------------hhhHHHHHHHHHhcC
Confidence            999999987532             112345666666665

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.86  E-value=0.018  Score=51.70  Aligned_cols=115  Identities=20%  Similarity=0.249  Sum_probs=68.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------hCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---ENA-------LTG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------l~~  112 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++........+....  ..+..+.. -+|.   +++       +..
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGR   82 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999987  899999876121111333221  22322211 1232   222       347


Q ss_pred             CcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 018433          113 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       113 aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      .|++|..||......   .+   ....+..|+...    +.+.+.+++.. .+.||++|..
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  142 (249)
T 2ew8_A           83 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTST  142 (249)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcch
Confidence            899999998643211   12   234456666654    44444455443 5677777653

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.85  E-value=0.0068  Score=54.80  Aligned_cols=117  Identities=16%  Similarity=0.185  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL-GQPQ---LENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~---g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------  110 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++...   ....++.... ...+..+. .-+|   .++++      
T Consensus         4 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999987  89999987621   1222232110 11222221 1122   22223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCC
Q 018433          111 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                       ...|++|..||......   .+   ....+..|+...    +...+.+++. ..+.||++|...
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~  144 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASAH  144 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECcHH
Confidence             37899999998653211   12   234455666644    4444444443 346777776543

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.85  E-value=0.0053  Score=55.08  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=69.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al~-----  111 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+ +.  ......++....  ..+..+.. -+|.   +++++     
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999987  8999998 43  222233343221  22222211 1232   22232     


Q ss_pred             --CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 018433          112 --GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                        ..|++|..||......   .+   ....+..|+..    .+.+.+.+++.. .+.||++|.-
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  142 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIASV  142 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCH
Confidence              7999999998753211   12   23445666665    445555555443 4677777643

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.85  E-value=0.0013  Score=60.84  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=47.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||+ |.+|..++..|...+.  +|+++|+++..  ...+...    .+..   ++++.++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~----g~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDA--CKEFQDA----GEQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHTT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHc----CCee---cCCHHHHHhcCCEEEEeC
Confidence            68999999 9999999999998887  89999987621  1223322    1222   356778889999999985

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.85  E-value=0.0093  Score=54.94  Aligned_cols=157  Identities=17%  Similarity=0.159  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  .|+++|++.  +...+.++....  ..+..+.. -+|.   ++++       
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           28 SPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34789999999999999999999987  999999876  333344444322  22222211 1232   2222       


Q ss_pred             CCCcEEEEcCCCCCC--C--CCc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 TGMDLVIIPAGVPRK--P--GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~--~--g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      ...|++|..||....  +  ..+   ....+..|+.....+.+.+    ++. ..+.||++|.-....          ..
T Consensus       104 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~~~~~----------~~  172 (283)
T 3v8b_A          104 GHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVSSINGTR----------TF  172 (283)
T ss_dssp             SCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT----------BC
T ss_pred             CCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEcChhhcc----------CC
Confidence            379999999986422  1  122   2344566665554444444    443 456777776543221          00


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +.|..-.++.+......+-+.+|..++  +..|++..+
T Consensus       173 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  208 (283)
T 3v8b_A          173 TTPGATAYTATKAAQVAIVQQLALELG--KHHIRVNAV  208 (283)
T ss_dssp             CSTTCHHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhC--ccCcEEEEE
Confidence            122222233333333456677777764  445654444

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.84  E-value=0.0082  Score=55.05  Aligned_cols=115  Identities=19%  Similarity=0.146  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQL---ENA-------  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-------  109 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|.+..   .....++....  ..+..+.. -+|.   .++       
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999987  8999998761   22223333221  22222211 1222   122       


Q ss_pred             hCCCcEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          110 LTGMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                      +...|++|..||......   .   +....+..|+.....+.+.+..+- ..+.||++|.
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            247899999998753211   1   234557788888888888777663 4567777764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.84  E-value=0.0051  Score=58.49  Aligned_cols=65  Identities=25%  Similarity=0.312  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .+||+|||+ |.+|.+++..|...+.  +++++|.+.....  +..... .  +..   + ++.+++++||+||++.
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~--~~a~~~-G--~~~---~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATV--AKAEAH-G--LKV---A-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHH--HHHHHT-T--CEE---E-CHHHHHHTCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHH--HHHHHC-C--CEE---c-cHHHHHhcCCEEEEeC
Confidence            358999999 9999999999998886  8899998752211  111111 1  122   1 5668899999999985

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.84  E-value=0.01  Score=53.51  Aligned_cols=148  Identities=12%  Similarity=0.090  Sum_probs=79.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEe-CCCCh---hhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFL-GQPQL---ENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~-~t~d~---~~al------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++...... ..+..+. .-+|.   ++++      
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            34799999999999999999999887  899999976  33333333322101 1222211 11232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCC--CCc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 -TGMDLVIIPAGVPRKP--GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                       ...|++|..||.....  ..+   ....+..|+.....+.+.    +++. ..+.|+++|......            +
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------~  151 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVASRAAKY------------G  151 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC------------------
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEccHHhcC------------C
Confidence             3689999999874321  222   223455565544444444    4433 467777776644322            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhC
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                      .++.-.++.+......+-+.++..++
T Consensus       152 ~~~~~~Y~asKaa~~~l~~~la~e~~  177 (250)
T 3nyw_A          152 FADGGIYGSTKFALLGLAESLYRELA  177 (250)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhh
Confidence            12222334433333445666777763

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.84  E-value=0.0028  Score=57.36  Aligned_cols=159  Identities=14%  Similarity=0.127  Sum_probs=89.1

Q ss_pred             CCCCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCC---hhhhhC----
Q 018433           42 AAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENALT----  111 (356)
Q Consensus        42 ~~~~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d---~~~al~----  111 (356)
                      .+.++|.|+||+  |.+|.+++..|+..|.  +|+++|++. ......++.........-.. .-+|   .++.++    
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFPC-DVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEEC-CCCCHHHHHHHHHHHHH
Confidence            345699999998  8999999999999987  899999875 22222233221111111110 1122   222332    


Q ss_pred             ---CCcEEEEcCCCCCC-----C--C-Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHH
Q 018433          112 ---GMDLVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK  176 (356)
Q Consensus       112 ---~aDiVIi~ag~~~~-----~--g-~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~  176 (356)
                         ..|++|..||....     +  . .+   ....+..|+.....+.+.+...- +.+.|+++|......         
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------  159 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER---------  159 (271)
T ss_dssp             HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS---------
T ss_pred             HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc---------
Confidence               66999999986431     1  1 22   23456677777777777776553 356777776433211         


Q ss_pred             HhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          177 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       177 ~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                         +.|..-.++.+......+-+.++..++  +..|++..+
T Consensus       160 ---~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  195 (271)
T 3ek2_A          160 ---AIPNYNTMGLAKAALEASVRYLAVSLG--AKGVRVNAI  195 (271)
T ss_dssp             ---BCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             ---CCCCccchhHHHHHHHHHHHHHHHHHH--hcCcEEEEE
Confidence               223333344433333345566666663  344544443

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.83  E-value=0.0017  Score=59.10  Aligned_cols=112  Identities=17%  Similarity=0.246  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.  ......++..     .+..+.. -+|   .+++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   79 (260)
T 1nff_A            7 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTAF   79 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999875  2222222321     1221111 122   233444      


Q ss_pred             -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCC
Q 018433          112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNP  163 (356)
                       ..|++|..||.....   ..+   ....+..|+...    +.+.+.+++. ..+.||++|..
T Consensus        80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  141 (260)
T 1nff_A           80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSI  141 (260)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEeeh
Confidence             899999999865321   112   234456666555    4555555544 35677777653

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.82  E-value=0.023  Score=54.12  Aligned_cols=159  Identities=16%  Similarity=0.136  Sum_probs=93.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---------hhHHHHHhcCCCCCeEEEEeC-CCCh---hhh
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFLG-QPQL---ENA  109 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---------~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a  109 (356)
                      +.+.+.|+||+|.+|..++..|+..|.  +|+++|++..         ...+.++....  ..+..+.. -+|.   +++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~  119 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAA  119 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHH
Confidence            345799999999999999999999987  8999998761         12233343322  23332211 1222   222


Q ss_pred             h-------CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHH
Q 018433          110 L-------TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAE  173 (356)
Q Consensus       110 l-------~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~  173 (356)
                      +       ...|++|..||.....   ..+   ....+..|+.....+.+.+..+   ...+.||++|.+......    
T Consensus       120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~----  195 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV----  195 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG----
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC----
Confidence            2       3899999999864321   112   2345667777666666665433   245788888877654310    


Q ss_pred             HHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          174 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       174 ~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                            .++..-.++.+...-..+-+.+|..++   ..|++..+.
T Consensus       196 ------~~~~~~~Y~aSKaal~~l~~~la~e~~---~gIrvn~v~  231 (346)
T 3kvo_A          196 ------WFKQHCAYTIAKYGMSMYVLGMAEEFK---GEIAVNALW  231 (346)
T ss_dssp             ------GTSSSHHHHHHHHHHHHHHHHHHHHTT---TTCEEEEEE
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHhc---CCcEEEEEe
Confidence                  022222233433333456677888886   345554443

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.81  E-value=0.007  Score=55.39  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHHHHhcCCCCCeEEEEeC-CCC---
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFLG-QPQ---  105 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------------~~g~~~dl~~~~~~~~v~~~~~-t~d---  105 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|+++              +......+....  ..+..+.. -+|   
T Consensus        10 ~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~   85 (281)
T 3s55_A           10 GKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRAA   85 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence            34899999999999999999999997  899999862              111112222221  22222211 122   


Q ss_pred             hhhhh-------CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 018433          106 LENAL-------TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNP  163 (356)
Q Consensus       106 ~~~al-------~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  163 (356)
                      .++++       ...|++|..||.....   ..+   ....+..|+.....+.+.    +.+. ..+.||++|..
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  159 (281)
T 3s55_A           86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR-NYGRIVTVSSM  159 (281)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCh
Confidence            22223       3789999999865321   122   234456676655555555    4433 35777777653

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.81  E-value=0.0055  Score=55.61  Aligned_cols=156  Identities=17%  Similarity=0.147  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  ++++. +.+.  ......++....  ..+..+.. -+|.   ++++      
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34799999999999999999999987  88886 6654  233334444322  23332211 1232   2223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                       ...|++|..||......   .+   ....+..|+.....+.+.+..+   ...+.||++|.-....            +
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------------~  147 (258)
T 3oid_A           80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR------------Y  147 (258)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS------------B
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC------------C
Confidence             35699999998643211   12   2334566665555555544322   2356777776432211            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       148 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  182 (258)
T 3oid_A          148 LENYTTVGVSKAALEALTRYLAVELS--PKQIIVNAV  182 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            22222333433333456667777763  444544443

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.80  E-value=0.0028  Score=56.24  Aligned_cols=112  Identities=16%  Similarity=0.154  Sum_probs=65.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCC---hhhhh-------CC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------TG  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d---~~~al-------~~  112 (356)
                      ++|.|+||+|.+|+.++..|+..|.  +|+++|++.  ......++...   ..+..  .-+|   .++++       ..
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~--D~~~~~~~~~~~~~~~~~~~~   78 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELEGA---LPLPG--DVREEGDWARAVAAMEEAFGE   78 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTC---EEEEC--CTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhhc---eEEEe--cCCCHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999887  899999875  22222222111   01111  1122   22222       37


Q ss_pred             CcEEEEcCCCCCCCC---C---cHHHHHHHHHHHHH----HHHHHHHHhCCCcEEEEecCCC
Q 018433          113 MDLVIIPAGVPRKPG---M---TRDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       113 aDiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~----~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      .|+||..+|......   .   +....+..|+....    .+.+.+++. ..+.||++|...
T Consensus        79 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~  139 (234)
T 2ehd_A           79 LSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSLA  139 (234)
T ss_dssp             CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCTT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCch
Confidence            899999998643211   1   12345566666554    444444432 356777776543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.80  E-value=0.011  Score=53.88  Aligned_cols=156  Identities=19%  Similarity=0.189  Sum_probs=86.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-------------C--chhHHHHHhcCCCCCeEEEEe-CCCCh-
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-------------N--TPGVTADISHMDTGAVVRGFL-GQPQL-  106 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~-------------~--~~g~~~dl~~~~~~~~v~~~~-~t~d~-  106 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++             .  +.....++....  ..+..+. .-+|. 
T Consensus        11 ~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   86 (277)
T 3tsc_A           11 GRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDFD   86 (277)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHH
Confidence            35799999999999999999999998  89999983             1  122222233221  2232221 11232 


Q ss_pred             --hhh-------hCCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 018433          107 --ENA-------LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNST  167 (356)
Q Consensus       107 --~~a-------l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~  167 (356)
                        ++.       +...|++|..||......   .+   ....+..|+.    ..+...+.+.+..+.+.||++|.-....
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  166 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK  166 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence              122       236899999998753221   12   2234555654    4455555566665567888887543221


Q ss_pred             HHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          168 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       168 t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                                  +.|..-.++.+......+-+.++..++  +..|++..+
T Consensus       167 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  202 (277)
T 3tsc_A          167 ------------MQPFMIHYTASKHAVTGLARAFAAELG--KHSIRVNSV  202 (277)
T ss_dssp             ------------CCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ------------CCCCchhhHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence                        122222233333333456667777764  344544333

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.80  E-value=0.0087  Score=54.93  Aligned_cols=114  Identities=14%  Similarity=0.092  Sum_probs=70.8

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCC-eEEEEeCCCC---hhhhh-------
Q 018433           45 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGA-VVRGFLGQPQ---LENAL-------  110 (356)
Q Consensus        45 ~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~-~v~~~~~t~d---~~~al-------  110 (356)
                      ++|.|+||+  |.+|.+++..|+..|.  +|+++|++. ......++....... .+..  .-+|   .++++       
T Consensus        22 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~--Dl~~~~~v~~~~~~~~~~~   97 (285)
T 2p91_A           22 KRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVKC--DVSLDEDIKNLKKFLEENW   97 (285)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEEC--CTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEc--CCCCHHHHHHHHHHHHHHc
Confidence            479999998  8999999999999987  899999875 222223332211111 1111  1122   22223       


Q ss_pred             CCCcEEEEcCCCCCC-----C--CCc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  162 (356)
                      ...|++|..||....     +  ..+   ....+..|+.....+.+.+...-  ..+.||++|.
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A           98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            268999999987532     1  112   23456778877777777776553  2467777765

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.80  E-value=0.0015  Score=58.97  Aligned_cols=153  Identities=18%  Similarity=0.209  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCC---hhhhh-------C
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------T  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d---~~~al-------~  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++  +.....++....  ..+..  .-+|   .++++       .
T Consensus         9 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~--Dv~d~~~v~~~~~~~~~~~g   82 (248)
T 3op4_A            9 GKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNG--KGMAL--NVTNPESIEAVLKAITDEFG   82 (248)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGE--EEEEC--CTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccc--eEEEE--eCCCHHHHHHHHHHHHHHcC
Confidence            34789999999999999999999988  899999876  222233332211  00110  1122   22223       3


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ..|++|..||......   .+   ....+..|+.....+.+.    +.+. ..+.|+++|.-...            .+.
T Consensus        83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~------------~~~  149 (248)
T 3op4_A           83 GVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVGSVVGT------------MGN  149 (248)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH------------HCC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhhc------------CCC
Confidence            7999999998753211   11   234456666555554444    4333 35677777642210            123


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      |..-.++.+......+-+.+|..++  +..|++..+
T Consensus       150 ~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  183 (248)
T 3op4_A          150 AGQANYAAAKAGVIGFTKSMAREVA--SRGVTVNTV  183 (248)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHH--HhCeEEEEE
Confidence            3333344443333446667777763  344544444

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.79  E-value=0.002  Score=57.04  Aligned_cols=98  Identities=16%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCC---hhh-hhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LEN-ALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~-al~~aDiVIi~a  120 (356)
                      |||.|+|+ |.+|+.++..|...+.  +++++|.++.  .+.++.+.. ...+-. ...+|   +++ .+++||+||++.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~--~~~~l~~~~-~~~~i~-gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDRE--LCEEFAKKL-KATIIH-GDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHH--HHHHHHHHS-SSEEEE-SCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHH--HHHHHHHHc-CCeEEE-cCCCCHHHHHhcCcccCCEEEEec
Confidence            79999998 9999999999998887  9999998762  112222111 111111 11122   233 378999999985


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV  164 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv  164 (356)
                      +..           ..|.    .++...++..|...++.-+ ||.
T Consensus        74 ~~d-----------~~n~----~~~~~a~~~~~~~~iia~~~~~~  103 (218)
T 3l4b_C           74 PRD-----------EVNL----FIAQLVMKDFGVKRVVSLVNDPG  103 (218)
T ss_dssp             SCH-----------HHHH----HHHHHHHHTSCCCEEEECCCSGG
T ss_pred             CCc-----------HHHH----HHHHHHHHHcCCCeEEEEEeCcc
Confidence            421           2332    2333444556777666554 554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.78  E-value=0.0085  Score=54.83  Aligned_cols=156  Identities=17%  Similarity=0.232  Sum_probs=85.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------  110 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++.....  .+..+. .-+|   .++++       
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           28 KQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKEF  103 (270)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            34789999999999999999999988  899999976  3333333433211  111111 1122   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ...|++|..||.....   ..+   ....+..|+.....+.+.+...   ...+.||++|.-...            .+.
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~~  171 (270)
T 3ftp_A          104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGS------------AGN  171 (270)
T ss_dssp             SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH------------HCC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhC------------CCC
Confidence            3789999999864321   112   2344566766555555544321   245777777642210            123


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      |..-.++.+......+-+.++..++  +..|++.++
T Consensus       172 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  205 (270)
T 3ftp_A          172 PGQVNYAAAKAGVAGMTRALAREIG--SRGITVNCV  205 (270)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            3333334433333445666777763  334444333

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.77  E-value=0.0097  Score=54.67  Aligned_cols=77  Identities=14%  Similarity=0.108  Sum_probs=52.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----hhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----ENA-------  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----~~a-------  109 (356)
                      .++|.|+||+|.+|.+++..|+..|.  .|++.|++.  ......++.... ...+..+.. -+|.    ++.       
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            34789999999999999999999987  999999986  333344554432 223333221 1232    111       


Q ss_pred             hCCCcEEEEcCCCC
Q 018433          110 LTGMDLVIIPAGVP  123 (356)
Q Consensus       110 l~~aDiVIi~ag~~  123 (356)
                      +...|++|..||..
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            24799999999864

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.77  E-value=0.0046  Score=57.79  Aligned_cols=63  Identities=19%  Similarity=0.310  Sum_probs=43.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ||++||- |.+|+.+|..|+..|+  +|+.+|+++..  +.++....    .+.   ..++.++++++|+||++-
T Consensus         7 kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~G----~~~---~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            7 KIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASK--AEPLTKLG----ATV---VENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CEE---CSSGGGGCCTTCEEEECC
T ss_pred             cEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHcC----CeE---eCCHHHHHhcCCceeeec
Confidence            8999999 9999999999999998  99999987621  11222221    222   245678899999999874

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.77  E-value=0.0059  Score=54.76  Aligned_cols=150  Identities=13%  Similarity=0.129  Sum_probs=82.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-e--CCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhh-------CC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-D--VVN--TPGVTADISHMDTGAVVRGFLGQPQLENAL-------TG  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D--~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-------~~  112 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++. |  ++.  +.....++ .   ..++.   ...+.++++       ..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~---~~~~~---~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-P---GTIAL---AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-T---TEEEC---CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-C---CCccc---CHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999987  89999 5  765  22222222 1   11111   122333333       36


Q ss_pred             CcEEEEcCCCCCC----C--CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          113 MDLVIIPAGVPRK----P--GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       113 aDiVIi~ag~~~~----~--g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      .|++|..||....    +  ..+   ....+..|+.....+.+.+..+   ...+.||++|.-....            +
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------------~  140 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK------------P  140 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS------------C
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC------------C
Confidence            8999999986533    1  112   2344566665555544444321   2357777776543221            2


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .|..-.++.+......+-+.++..++  +..|++..+
T Consensus       141 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  175 (244)
T 1zmo_A          141 LAYNPLYGPARAATVALVESAAKTLS--RDGILLYAI  175 (244)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            23333344433333445566666663  334544333

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.77  E-value=0.0044  Score=56.55  Aligned_cols=155  Identities=15%  Similarity=0.114  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al------  110 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.   ......++....  ..+..+.. -+|   ..+++      
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           29 GKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999988  899999865   222223333321  22332211 122   22223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                       ...|++|..||......   .+   ....+..|+.....    +.+.+++. ..+.|+++|.....            .
T Consensus       105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~------------~  171 (271)
T 4iin_A          105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS-RFGSVVNVASIIGE------------R  171 (271)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH------------H
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCCEEEEEechhhc------------C
Confidence             37899999998753221   11   23445556554444    44444443 34667776542210            1


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +.+..-.++.+......+-+.++..+.  +..|++..+
T Consensus       172 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  207 (271)
T 4iin_A          172 GNMGQTNYSASKGGMIAMSKSFAYEGA--LRNIRFNSV  207 (271)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCCCchHhHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence            233333344443333445566666653  334544333

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.77  E-value=0.0083  Score=54.18  Aligned_cols=115  Identities=14%  Similarity=0.130  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch----hHHHHHhcCCCCCeEEEEeC-CCCh---hhhhC-----
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGFLG-QPQL---ENALT-----  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~----g~~~dl~~~~~~~~v~~~~~-t~d~---~~al~-----  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++...    ....++....  ..+..+.. -+|.   +++++     
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD--QKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999887  89999987522    1222333221  22332211 1232   22232     


Q ss_pred             --CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCC
Q 018433          112 --GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTL----CEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNP  163 (356)
                        ..|++|..+|......   .+   ....+..|+.....+    .+.+++....+.||++|..
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  142 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASI  142 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcc
Confidence              7899999998643211   12   234455666544444    4444444433677777654

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.76  E-value=0.009  Score=53.68  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.... ...+..+.. -+|.   ++++       
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   90 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   90 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            34899999999999999999999887  899999865  222222332111 122222211 1222   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHH----HhCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~viv~tNP  163 (356)
                      ...|+||..+|......   .+   ....+..|+.....+.+.+.    +....+.||++|..
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  153 (265)
T 1h5q_A           91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSM  153 (265)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCc
Confidence            34899999998643211   11   22345666655555555443    33334677777643

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.76  E-value=0.007  Score=56.72  Aligned_cols=117  Identities=16%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------chhHHHHHhcCCCCCeEEEEeC-CCC---
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFLG-QPQ---  105 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------------~~g~~~dl~~~~~~~~v~~~~~-t~d---  105 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.              +......+...  ...+..+.. -+|   
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRDLAS  121 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            35789999999999999999999988  999999762              11111222221  122332211 122   


Q ss_pred             hhhhh-------CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCCC
Q 018433          106 LENAL-------TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       106 ~~~al-------~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNPv  164 (356)
                      .++++       ...|++|..||.....   ..+   ....+..|+.....    +.+.+.+....+.||++|...
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~  197 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTV  197 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHH
Confidence            22222       3789999999865321   122   23445666654444    444455444567788876543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.75  E-value=0.0057  Score=56.33  Aligned_cols=157  Identities=17%  Similarity=0.197  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++...  ...+..+.. -+|   .++++       
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34789999999999999999999987  899999876  33333444332  122332211 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ...|++|..||.....+    .+   -...+..|+.....+.+.+...   ...+.||++|......           .+
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------~~  152 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHT-----------AG  152 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTT-----------BC
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCc-----------CC
Confidence            37899999998642211    12   2334556665555444443322   2356777776544321           12


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ++..-.++.+......+-+.++..++  +..|++.++
T Consensus       153 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  187 (280)
T 3tox_A          153 FAGVAPYAASKAGLIGLVQALAVELG--ARGIRVNAL  187 (280)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            22222233333333345566677663  344544444

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.75  E-value=0.005  Score=57.71  Aligned_cols=65  Identities=22%  Similarity=0.384  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ++||++||- |.+|+.+|..|+..|+  +|+.+|++.  ..+..+.....    +.   ..++.++.++||+||..-
T Consensus         3 M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~--~~~~~l~~~Ga----~~---a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            3 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQ--SAVDGLVAAGA----SA---ARSARDAVQGADVVISML   67 (300)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSH--HHHHHHHHTTC----EE---CSSHHHHHTTCSEEEECC
T ss_pred             cCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCH--HHHHHHHHcCC----EE---cCCHHHHHhcCCceeecC
Confidence            459999999 9999999999999998  999999875  22333443321    11   245788999999999873

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.75  E-value=0.0085  Score=59.00  Aligned_cols=108  Identities=15%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC----------------CCeEEEEeCCCChh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------GAVVRGFLGQPQLE  107 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~t~d~~  107 (356)
                      ..|.+|||. |+||..+|..|+..|+  +|+.+|+++  ..+..|.....                ...++.   |+|  
T Consensus        11 ~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~--~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~---ttd--   80 (431)
T 3ojo_A           11 GSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQ--QTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKV---STT--   80 (431)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESS--
T ss_pred             CCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCH--HHHHHHHCCCCCcCCCCHHHHHHhhcccCceEE---eCc--
Confidence            469999999 9999999999999998  999999986  22223333210                123443   344  


Q ss_pred             hhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCcc
Q 018433          108 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNST  167 (356)
Q Consensus       108 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~-tNPv~~~  167 (356)
                        +++||+||++.+.|......+    .-++..+...++.|.++. |..+|+.- |-|.+..
T Consensus        81 --~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt  136 (431)
T 3ojo_A           81 --PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPKTM  136 (431)
T ss_dssp             --CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHH
T ss_pred             --hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHH
Confidence              468999999987775322000    011222444455566555 44444433 4555543

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.74  E-value=0.013  Score=52.28  Aligned_cols=112  Identities=16%  Similarity=0.224  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeE-EEEe-CCCC---hhhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVV-RGFL-GQPQ---LENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v-~~~~-~t~d---~~~al------  110 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++.     ..+ ..+. .-+|   .++++      
T Consensus        11 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (254)
T 2wsb_A           11 GACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEAEAV   83 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHHHhh
Confidence            35899999999999999999999987  899999875  222222231     111 1111 1122   22222      


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      ...|+||..||.....   ..+   ....+..|+..    .+.+.+.+.+. ..+.|+++|..
T Consensus        84 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~isS~  145 (254)
T 2wsb_A           84 APVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVAR-GAGAIVNLGSM  145 (254)
T ss_dssp             SCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEecc
Confidence            4789999999864321   111   23445566665    44444444444 35677777654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.72  E-value=0.01  Score=53.93  Aligned_cols=114  Identities=15%  Similarity=0.037  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++....  ..+..+. .-+|.   ++++       
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999976  333334444322  2222221 11232   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHH----HHHHhCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~----~i~~~~p~a~viv~tNP  163 (356)
                      ...|++|..||.....+    .+   ....+..|+.....+.+    .+.+.  .+.||++|.-
T Consensus        87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~g~iv~isS~  148 (264)
T 3ucx_A           87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES--KGAVVNVNSM  148 (264)
T ss_dssp             SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--TCEEEEECCG
T ss_pred             CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEECcc
Confidence            37899999997632211    12   22345556554444444    44443  3677777653

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.71  E-value=0.0056  Score=55.32  Aligned_cols=156  Identities=16%  Similarity=0.076  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL----  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~---~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al----  110 (356)
                      .+++.|+||+|.+|.+++..|+.   .|.  +|+++|++.  +.....++........+..+.. -+|.   ++++    
T Consensus         6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998   676  899999976  2333333432111123332211 1232   1111    


Q ss_pred             C-----CCc--EEEEcCCCCCCC-C-----Cc---HHHHHHHHHHHHHHHHHHHHHhC-----CCcEEEEecCCCCccHH
Q 018433          111 T-----GMD--LVIIPAGVPRKP-G-----MT---RDDLFNINAGIVRTLCEGIAKCC-----PNATVNLISNPVNSTVP  169 (356)
Q Consensus       111 ~-----~aD--iVIi~ag~~~~~-g-----~~---r~~~~~~N~~i~~~i~~~i~~~~-----p~a~viv~tNPv~~~t~  169 (356)
                      +     ..|  ++|..||..... +     .+   ....+..|+.....+.+.+...-     ..+.||++|.-....  
T Consensus        84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~--  161 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ--  161 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS--
T ss_pred             hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC--
Confidence            1     347  999999864321 1     22   23456778877777777776543     236777776543211  


Q ss_pred             HHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          170 IAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       170 ~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                                +.|..-.++.+......+-+.++..++  +  |++..+
T Consensus       162 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~--~--i~vn~v  195 (259)
T 1oaa_A          162 ----------PYKGWGLYCAGKAARDMLYQVLAAEEP--S--VRVLSY  195 (259)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHCT--T--EEEEEE
T ss_pred             ----------CCCCccHHHHHHHHHHHHHHHHHhhCC--C--ceEEEe
Confidence                      222222333433333445667777764  2  554444

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.70  E-value=0.0055  Score=55.57  Aligned_cols=157  Identities=15%  Similarity=0.145  Sum_probs=90.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-----  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++. +.+.  ......++....  ..+..+. .-+|   .+++++     
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34899999999999999999999987  88888 4444  222333444322  1222211 1123   222232     


Q ss_pred             --CCcEEEEcCCCCC--CC--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 --GMDLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 --~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                        ..|++|..||...  .+  ..+   ....+..|+.....+.+.+...- ..+.||++|.....           ..+.
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~-----------~~~~  152 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGR-----------DGGG  152 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH-----------HCCS
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhc-----------cCCC
Confidence              7899999987541  21  122   23456788888888888776654 24677777643211           0123


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      +..-.++.+......+-+.+|..++  +. |++..+.
T Consensus       153 ~~~~~Y~asKaa~~~l~~~la~e~~--~~-I~vn~v~  186 (259)
T 3edm_A          153 PGALAYATSKGAVMTFTRGLAKEVG--PK-IRVNAVC  186 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHT--TT-CEEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHC--CC-CEEEEEE
Confidence            3333344443334456677788875  33 6554443

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.69  E-value=0.0073  Score=54.98  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=72.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++.     ..+..+.. -+|   .+++++      
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  999999875  221112221     12222211 122   222232      


Q ss_pred             -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 018433          112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  166 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~  166 (356)
                       ..|++|..+|.....   ..+   ....+..|+.....+.+.+..+- ..+.||++|.....
T Consensus        79 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~  141 (263)
T 2a4k_A           79 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL  141 (263)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc
Confidence             569999999864321   112   23456778887777777776654 24678888765443

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.69  E-value=0.0074  Score=55.10  Aligned_cols=116  Identities=15%  Similarity=0.105  Sum_probs=71.7

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCC---hhhhh-------
Q 018433           44 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d---~~~al-------  110 (356)
                      .+++.|+||+  |.+|.+++..|+..|.  +|+++|++. ......++.........-.. .-+|   .++++       
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~~   82 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYEL-DVSKEEHFKSLYNSVKKDL   82 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEc-CCCCHHHHHHHHHHHHHHc
Confidence            3589999998  8999999999999987  899999876 22223333221111111100 1122   22222       


Q ss_pred             CCCcEEEEcCCCCCC-----C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                      ...|++|..||....     +  ..+   ....+..|+.....+.+.+...- +.+.||++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            267999999987532     1  122   23456788888888887776553 2467777765

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.67  E-value=0.003  Score=56.81  Aligned_cols=114  Identities=20%  Similarity=0.193  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCC---hhhhh-------CCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------TGM  113 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~al-------~~a  113 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++....  .++.+.. ....... .-+|   .++++       ...
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~~~g~i   78 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPL--REAAEAV-GAHPVVM-DVADPASVERGFAEALAHLGRL   78 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHHHHTT-TCEEEEC-CTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHc-CCEEEEe-cCCCHHHHHHHHHHHHHHcCCC
Confidence            35899999999999999999999987  899999875111  1111110 1111100 1122   22223       258


Q ss_pred             cEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 018433          114 DLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  163 (356)
Q Consensus       114 DiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNP  163 (356)
                      |++|..+|......   .   .....+..|+.....+.+.+..+   ...+.|+++|.-
T Consensus        79 d~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~  137 (245)
T 1uls_A           79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR  137 (245)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccc
Confidence            99999998653211   1   12345667777666666655543   235677777654

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.66  E-value=0.0032  Score=57.08  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCC---hhhh-------hCCCc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-------LTGMD  114 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~a-------l~~aD  114 (356)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++....     ...   ..+..  .-+|   .+++       +...|
T Consensus        22 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-----~~~---~~~~~--Dl~d~~~v~~~~~~~~~~~g~iD   89 (253)
T 2nm0_A           22 RSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPP-----EGF---LAVKC--DITDTEQVEQAYKEIEETHGPVE   89 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCC-----TTS---EEEEC--CTTSHHHHHHHHHHHHHHTCSCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhh-----ccc---eEEEe--cCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999987  899999875110     000   00000  0011   1222       23579


Q ss_pred             EEEEcCCCCCCC------CCcHHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCC
Q 018433          115 LVIIPAGVPRKP------GMTRDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVN  165 (356)
Q Consensus       115 iVIi~ag~~~~~------g~~r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~  165 (356)
                      ++|..+|.....      ..+....+..|+.....+.+.    +.+. ..+.||++|.-..
T Consensus        90 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~  149 (253)
T 2nm0_A           90 VLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSVVG  149 (253)
T ss_dssp             EEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECchhh
Confidence            999999864321      122345566777655555544    4333 3567788776544

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.66  E-value=0.0029  Score=60.22  Aligned_cols=61  Identities=16%  Similarity=0.286  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..++|+|||. |.+|..+|..+...|.  +|+.+|++.....         .  ...   ..++++.+++||+|+++.
T Consensus       163 ~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~---------g--~~~---~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          163 SGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT---------N--YTY---YGSVVELASNSDILVVAC  223 (333)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC---------C--SEE---ESCHHHHHHTCSEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc---------C--cee---cCCHHHHHhcCCEEEEec
Confidence            4579999999 9999999999987776  8999998752110         1  111   246778899999999985

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.66  E-value=0.031  Score=51.21  Aligned_cols=117  Identities=13%  Similarity=0.083  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhHHHHHhcCCCCCeEEEEe-CCCC----h---hhh----
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTGAVVRGFL-GQPQ----L---ENA----  109 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~~~dl~~~~~~~~v~~~~-~t~d----~---~~a----  109 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|+++|++. .  .....++.... ...+..+. .-+|    .   +++    
T Consensus        24 k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           24 PAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELNKER-SNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhhc-CCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            4799999999999999999999887  899999876 2  22223332111 12222221 1123    1   122    


Q ss_pred             ---hCCCcEEEEcCCCCCCC--------C-----Cc---HHHHHHHHHHHHHHHHHHHHHhC---C------CcEEEEec
Q 018433          110 ---LTGMDLVIIPAGVPRKP--------G-----MT---RDDLFNINAGIVRTLCEGIAKCC---P------NATVNLIS  161 (356)
Q Consensus       110 ---l~~aDiVIi~ag~~~~~--------g-----~~---r~~~~~~N~~i~~~i~~~i~~~~---p------~a~viv~t  161 (356)
                         +...|++|..||.....        .     .+   ....+..|+.....+.+.+....   .      .+.||+++
T Consensus       101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~is  180 (288)
T 2x9g_A          101 FRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLC  180 (288)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEEC
T ss_pred             HHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEe
Confidence               23789999999864311        1     11   12345566655555555544432   1      46778776


Q ss_pred             CCC
Q 018433          162 NPV  164 (356)
Q Consensus       162 NPv  164 (356)
                      ...
T Consensus       181 S~~  183 (288)
T 2x9g_A          181 DAM  183 (288)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            543

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.66  E-value=0.014  Score=53.53  Aligned_cols=115  Identities=17%  Similarity=0.255  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++.  ......++....  ..+..+.. -+|.   ++++       
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEH  119 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999998886  899988765  233333443321  22332211 1232   2222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNP  163 (356)
                      ...|+||..||.....   ..+   ....+..|+.....    +.+.+.+. ..+.||++|..
T Consensus       120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~  181 (285)
T 2c07_A          120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISSI  181 (285)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEECCh
Confidence            4789999999865321   111   23455666666444    44444333 34677777654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.64  E-value=0.012  Score=54.63  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeC-CCCh---hhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLG-QPQL---ENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~-t~d~---~~al~-----  111 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++..... ...+..+.. -+|.   +++++     
T Consensus        26 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           26 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999987  899999876  2233333432211 002332211 1222   22232     


Q ss_pred             --CCcEEEEcCCCCCCCC-----Cc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 018433          112 --GMDLVIIPAGVPRKPG-----MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  162 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~g-----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  162 (356)
                        ..|++|..||......     .+   ....+..|+.....+.+.+....  ..+.||++|.
T Consensus       104 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS  166 (297)
T 1xhl_A          104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSS  166 (297)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             cCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence              7899999998643211     12   23345666655555544444321  1277777764

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.63  E-value=0.0048  Score=55.95  Aligned_cols=115  Identities=12%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC-----
Q 018433           44 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~-----  111 (356)
                      .+++.|+||+  |.+|.+++..|+..|.  +|+++|++. ......++......  +..+. .-+|   .+++++     
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGG--ALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--cEEEECCCCCHHHHHHHHHHHHHH
Confidence            3579999998  8999999999999887  899999875 22222333221111  11111 1122   222333     


Q ss_pred             --CCcEEEEcCCCCCC-----C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          112 --GMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       112 --~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                        ..|++|..||....     +  ..+   ....+..|+.....+.+.+...- ..+.||++|.
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence              67999999986532     1  112   23456778888877777766542 2367777764

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.62  E-value=0.0047  Score=56.49  Aligned_cols=148  Identities=9%  Similarity=0.086  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCC---hhh-------hhCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LEN-------ALTG  112 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d---~~~-------al~~  112 (356)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++....     ....  ..+..  .-+|   ..+       .+..
T Consensus        13 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~-----~~~~--~~~~~--Dv~~~~~v~~~~~~~~~~~g~   81 (269)
T 3vtz_A           13 TDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSD-----VNVS--DHFKI--DVTNEEEVKEAVEKTTKKYGR   81 (269)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--C-----TTSS--EEEEC--CTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhc-----cCce--eEEEe--cCCCHHHHHHHHHHHHHHcCC
Confidence            346899999999999999999999987  899999876211     0000  00110  0112   122       2347


Q ss_pred             CcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433          113 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  182 (356)
Q Consensus       113 aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~  182 (356)
                      .|++|..||......   .+   ....+..|+.....+.+.    +.+. ..+.||++|......            +.+
T Consensus        82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------~~~  148 (269)
T 3vtz_A           82 IDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI-GHGSIINIASVQSYA------------ATK  148 (269)
T ss_dssp             CCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------BCT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhhcc------------CCC
Confidence            899999998753211   11   233455666555444444    4433 356777776543221            122


Q ss_pred             CCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          183 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       183 ~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ..-.++.+......+-+.++..++  + .|++..+
T Consensus       149 ~~~~Y~asKaa~~~l~~~la~e~~--~-~i~vn~v  180 (269)
T 3vtz_A          149 NAAAYVTSKHALLGLTRSVAIDYA--P-KIRCNAV  180 (269)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHT--T-TEEEEEE
T ss_pred             CChhHHHHHHHHHHHHHHHHHHhc--C-CCEEEEE
Confidence            222233333333456667777774  2 3544443

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.62  E-value=0.0076  Score=55.17  Aligned_cols=118  Identities=14%  Similarity=0.159  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeC-CCCh---hhhh------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLG-QPQL---ENAL------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~-t~d~---~~al------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +.....++..... ...+..+.. -+|.   ++++      
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999987  899999876  2323333433211 013333211 1232   2223      


Q ss_pred             -CCCcEEEEcCCCCCC-C------CCc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 018433          111 -TGMDLVIIPAGVPRK-P------GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP  163 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~-~------g~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNP  163 (356)
                       ...|++|..||.... +      ..+   ....+..|+.....+.+.+..+-  ..+.||++|.-
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~  149 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSI  149 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCc
Confidence             268999999986432 1      111   23345566655555554443321  12677777653

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.62  E-value=0.00092  Score=61.23  Aligned_cols=152  Identities=16%  Similarity=0.208  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hH---HHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV---TADISHMDTGAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g~---~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ..   ..|+.+..   .+...  -....+.+...|++|.
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~~~~~--~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAA---YADGL--PGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHH---HHHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHH---HHHHH--HHHHHHhcCCCCEEEE
Confidence            34799999999999999999999987  89999987511  10   00111100   00000  0011223458999999


Q ss_pred             cCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          119 PAGVPRKPG---MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       119 ~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      .||......   .+   ....+..|+.....+.+.+    ++. ..+.||++|.-....            +.+..-.++
T Consensus       101 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~------------~~~~~~~Y~  167 (266)
T 3uxy_A          101 NAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNVASCWGLR------------PGPGHALYC  167 (266)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTB------------CCTTBHHHH
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHHhCC------------CCCCChHHH
Confidence            998753211   11   2334556665555555554    443 366777776544322            122222233


Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .+......+-+.++..++  +..|++..+
T Consensus       168 asKaa~~~l~~~la~e~~--~~gI~vn~v  194 (266)
T 3uxy_A          168 LTKAALASLTQCMGMDHA--PQGIRINAV  194 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            333333445666777663  334444333

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.61  E-value=0.003  Score=56.88  Aligned_cols=115  Identities=16%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhH---HHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV---TADISHMDTGAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~---~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.  ....   ..|+.+..   .+...  -....+.+...|++|.
T Consensus        15 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~g~id~lv~   87 (247)
T 1uzm_A           15 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRA--FTAVEEHQGPVEVLVS   87 (247)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHH--HHHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHhcCeeccCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999987  899999875  1110   01111100   00000  0001112346799999


Q ss_pred             cCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCC
Q 018433          119 PAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVN  165 (356)
Q Consensus       119 ~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~  165 (356)
                      .+|.....   ..+   ....+..|+.....+.+.+..+   ...+.||++|....
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  143 (247)
T 1uzm_A           88 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSG  143 (247)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhh
Confidence            99865321   112   2345566666555555544332   23577787776543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.60  E-value=0.013  Score=54.18  Aligned_cols=157  Identities=12%  Similarity=0.093  Sum_probs=89.4

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCC---hhhhh-------
Q 018433           44 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d---~~~al-------  110 (356)
                      .+++.|+||+|  .+|.+++..|+..|.  +|++.|+++ ......++........ .....-+|   .++++       
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~Dv~d~~~v~~~~~~~~~~~  106 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGVKL-TVPCDVSDAESVDNMFKVLAEEW  106 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTCCE-EEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeE-EEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999976  999999999999987  899999986 2222222221111111 11111122   22222       


Q ss_pred             CCCcEEEEcCCCCCC-----C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      ...|++|..||....     +  ..+   ....+..|+.....+.+.+..+- ..+.||++|......            
T Consensus       107 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~------------  174 (296)
T 3k31_A          107 GSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK------------  174 (296)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS------------
T ss_pred             CCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc------------
Confidence            367999999997531     1  122   33456778888888888877654 357788776533211            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +.+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       175 ~~~~~~~Y~asKaal~~l~~~la~e~~--~~gIrvn~v  210 (296)
T 3k31_A          175 VVPHYNVMGVCKAALEASVKYLAVDLG--KQQIRVNAI  210 (296)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            222223334433333446667777763  344544333

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.60  E-value=0.0035  Score=55.55  Aligned_cols=108  Identities=16%  Similarity=0.163  Sum_probs=65.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhC------CCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT------GMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~------~aDiVI  117 (356)
                      ++|.|+||+|.+|.+++..|+..|.  +|+++|++.. .     .+..   .+.. .....++.++++      ..|++|
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~-~-----~~~~---~~~~D~~~~~~~~~~~~~~~~~~~~d~li   71 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRRE-G-----EDLI---YVEGDVTREEDVRRAVARAQEEAPLFAVV   71 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC-S-----SSSE---EEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCcc-c-----cceE---EEeCCCCCHHHHHHHHHHHHhhCCceEEE
Confidence            5899999999999999999998887  8999998752 0     1100   0000 000112233343      789999


Q ss_pred             EcCCCCCCCC------C----cHHHHHHHHHHHHHHHHHHHHHhC---------CCcEEEEecCC
Q 018433          118 IPAGVPRKPG------M----TRDDLFNINAGIVRTLCEGIAKCC---------PNATVNLISNP  163 (356)
Q Consensus       118 i~ag~~~~~g------~----~r~~~~~~N~~i~~~i~~~i~~~~---------p~a~viv~tNP  163 (356)
                      ..+|......      .    .....+..|+.....+.+.+.+..         +.+.||++|..
T Consensus        72 ~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~  136 (242)
T 1uay_A           72 SAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASV  136 (242)
T ss_dssp             ECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCT
T ss_pred             EcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCCh
Confidence            9998643211      1    233456677776666666655432         12377776643

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.59  E-value=0.022  Score=51.01  Aligned_cols=154  Identities=17%  Similarity=0.183  Sum_probs=86.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT------  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~------  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  ++++.|.+.   ......++....  ..+..+.. -+|   .+++++      
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999987  888988755   233333443322  22222211 122   222233      


Q ss_pred             -CCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                       ..|++|..||.....   ..+   ....+..|+.....+.+.+    .+. ..+.||++|.-..           . .+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~-----------~-~~  147 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSSVVG-----------A-VG  147 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------H-HC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhh-----------c-CC
Confidence             789999999865321   112   2335566766555555544    443 4567777654211           0 12


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .|..-.++.+......+-+.++..++  +..|++..+
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v  182 (246)
T 3osu_A          148 NPGQANYVATKAGVIGLTKSAARELA--SRGITVNAV  182 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            33333344444334456667777664  344554444

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.54  E-value=0.01  Score=53.42  Aligned_cols=109  Identities=15%  Similarity=0.117  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCChhhh---hCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQLENA---LTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~~a---l~~aDiVIi~  119 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++.  ....++   .   .+..+. -..+.++.   +.+.|++|..
T Consensus        19 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~--~~~~~~---~---~~~~~~D~~~~~~~~~~~~~~iD~lv~~   88 (249)
T 1o5i_A           19 DKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNE--ELLKRS---G---HRYVVCDLRKDLDLLFEKVKEVDILVLN   88 (249)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH--HHHHHT---C---SEEEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCH--HHHHhh---C---CeEEEeeHHHHHHHHHHHhcCCCEEEEC
Confidence            45899999999999999999999987  899999875  111122   1   111110 01233332   3489999999


Q ss_pred             CCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 018433          120 AGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       120 ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      ||......   .+   ....+..|+..    .+.+.+.+++.. .+.||++|.-
T Consensus        89 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  141 (249)
T 1o5i_A           89 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSF  141 (249)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcch
Confidence            98653211   11   22344555544    445555555543 4677777653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.53  E-value=0.027  Score=52.01  Aligned_cols=147  Identities=15%  Similarity=0.092  Sum_probs=87.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-----
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-----  109 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-----  109 (356)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+.    .......+....  ..+..+.. -+|.   +++     
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  123 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAR  123 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999863    112222222221  22332211 1222   112     


Q ss_pred             --hCCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          110 --LTGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       110 --l~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                        +...|++|..||.....+    .+   ....+..|+.....+.+.+...- ..+.||++|.-....            
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~------------  191 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ------------  191 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS------------
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc------------
Confidence              247899999998743211    12   34567788888888888887665 356777776533211            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHh
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVL  205 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l  205 (356)
                      +.+..-.++.+......+-+.++..+
T Consensus       192 ~~~~~~~Y~asKaa~~~l~~~la~e~  217 (294)
T 3r3s_A          192 PSPHLLDYAATKAAILNYSRGLAKQV  217 (294)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            22222233343333345666677776

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.53  E-value=0.004  Score=56.90  Aligned_cols=113  Identities=24%  Similarity=0.357  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  .|++.|++.  +.....++.     ..+..+.. -+|.   ++++       
T Consensus        27 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (266)
T 3grp_A           27 GRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSIKQLAEVAEREM   99 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999876  222222221     12222211 1232   2222       


Q ss_pred             CCCcEEEEcCCCCCCC---CC---cHHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 018433          111 TGMDLVIIPAGVPRKP---GM---TRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~---~r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      ...|++|..||.....   ..   +....+..|+..    .+.+.+.+.+. ..+.||++|.-.
T Consensus       100 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~Iv~isS~~  162 (266)
T 3grp_A          100 EGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR-RYGRIINITSIV  162 (266)
T ss_dssp             TSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC-
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEECCHH
Confidence            3789999999875321   11   123445667666    55555555544 356777776544

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.52  E-value=0.028  Score=51.15  Aligned_cols=150  Identities=17%  Similarity=0.136  Sum_probs=82.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~a  113 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|+++|++...     +..... ..+..+. .-+|   .++++       ...
T Consensus        17 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~-----~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   88 (266)
T 3p19_A           17 KLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVER-----LKALNL-PNTLCAQVDVTDKYTFDTAITRAEKIYGPA   88 (266)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHH-----HHTTCC-TTEEEEECCTTCHHHHHHHHHHHHHHHCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHH-----HHHhhc-CCceEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            4789999999999999999999987  89999986411     111110 1111111 1122   22223       378


Q ss_pred             cEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHH----HHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          114 DLVIIPAGVPRKP---GMT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       114 DiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~----i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      |++|..||.....   ..+   ....+..|+.....    +.+.+.+. ..+.||++|.-....            +.|.
T Consensus        89 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~IV~isS~~~~~------------~~~~  155 (266)
T 3p19_A           89 DAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR-NCGTIINISSIAGKK------------TFPD  155 (266)
T ss_dssp             EEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTS------------CCTT
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcChhhCC------------CCCC
Confidence            9999999874321   122   23445666665555    44444443 356777776533211            2332


Q ss_pred             CCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       184 ~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .-.++.+......+-+.++..++  +..|++..+
T Consensus       156 ~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v  187 (266)
T 3p19_A          156 HAAYCGTKFAVHAISENVREEVA--ASNVRVMTI  187 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            22333333333445666777764  344544443

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.51  E-value=0.014  Score=53.05  Aligned_cols=156  Identities=15%  Similarity=0.128  Sum_probs=90.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL----  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al----  110 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  +|+++|...     +.....++...  ...+..+.. -+|.   ++.+    
T Consensus        11 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           11 NKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            34799999999999999999999987  899988653     22223344432  223333211 1232   2222    


Q ss_pred             ---CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 ---TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 ---~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                         ...|++|..||......   .+   ....+..|+.....+.+.+..+- +.+.|++++......            +
T Consensus        87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~------------~  154 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA------------Y  154 (262)
T ss_dssp             HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH------------H
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc------------C
Confidence               37899999998653221   12   23456678887777777776543 456777776543211            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .+..-.++.+......+-+.++..++  +..|++..+
T Consensus       155 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  189 (262)
T 3ksu_A          155 TGFYSTYAGNKAPVEHYTRAASKELM--KQQISVNAI  189 (262)
T ss_dssp             HCCCCC-----CHHHHHHHHHHHHTT--TTTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence            22233466655455567788888874  445544443

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.50  E-value=0.013  Score=52.40  Aligned_cols=113  Identities=15%  Similarity=0.171  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCChh------hhhCCCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQLE------NALTGMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~~------~al~~aDiV  116 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++....  .++.+.   ..+..+. .-+|.+      +.+...|++
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~--~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKL--QELEKY---PGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--GGGGGS---TTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhc---cCceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            35899999999999999999999987  899999875111  111111   1222211 112321      124578999


Q ss_pred             EEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 018433          117 IIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPV  164 (356)
Q Consensus       117 Ii~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv  164 (356)
                      |..+|......   .+   ....+..|+.....+.+.    +.+. ..+.||++|...
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~  135 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVA  135 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSB
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEechH
Confidence            99998653211   11   223455666555444444    4333 356777776543

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.49  E-value=0.046  Score=50.13  Aligned_cols=118  Identities=17%  Similarity=0.182  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---------hhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFLG-QPQL---ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---------~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al  110 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  +|+++|++..         .....++...  ...+..+.. -+|.   ++++
T Consensus         9 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            9 GKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHH
Confidence            34799999999999999999999987  8999998761         1122233322  123333211 1222   2223


Q ss_pred             -------CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecCCCC
Q 018433          111 -------TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNPVN  165 (356)
Q Consensus       111 -------~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tNPv~  165 (356)
                             ...|++|..||.....   ..+   ....+..|+.....+.+.+...-   ..+.||++|....
T Consensus        85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  155 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIR  155 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhh
Confidence                   3899999999865321   122   23456688888777777776553   3568888876554

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.48  E-value=0.021  Score=53.47  Aligned_cols=115  Identities=17%  Similarity=0.202  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC----------C--chhHHHHHhcCCCCCeEEEEeC-CCCh---h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV----------N--TPGVTADISHMDTGAVVRGFLG-QPQL---E  107 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~----------~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~  107 (356)
                      .+.+.|+||+|.+|.+++..|+..|.  +|++.|++          .  ......++....  ..+..+.. -+|.   .
T Consensus        27 gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~  102 (322)
T 3qlj_A           27 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVADGSNVADWDQAA  102 (322)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEEECCCTTSHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHH
Confidence            34789999999999999999999987  99999986          2  233333444322  23333211 1232   2


Q ss_pred             hhhC-------CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh----C-----CCcEEEEecC
Q 018433          108 NALT-------GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC----C-----PNATVNLISN  162 (356)
Q Consensus       108 ~al~-------~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~----~-----p~a~viv~tN  162 (356)
                      +.++       ..|++|..||......   .+   -...+..|+.....+.+.+..+    .     +.+.||++|.
T Consensus       103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS  179 (322)
T 3qlj_A          103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSS  179 (322)
T ss_dssp             HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcC
Confidence            2222       7899999998753211   12   2344566776544444443322    1     1367887764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.48  E-value=0.0017  Score=62.39  Aligned_cols=71  Identities=25%  Similarity=0.298  Sum_probs=45.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++|||.|+|| |+||+.++..|... .  ++.+.|++...  ...+.+..  ..+.. ......+.+.++++|+||.+.+
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~--~~~~~~~~--~~~~~d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNEN--LEKVKEFA--TPLKVDASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHH--HHHHTTTS--EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHH--HHHHhccC--CcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence            4589999999 99999999888643 3  88999987521  11122211  11221 0011235567899999999864

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.47  E-value=0.032  Score=50.57  Aligned_cols=114  Identities=12%  Similarity=0.168  Sum_probs=66.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------  110 (356)
                      +.+.|+||+|.+|.+++..|+..|.  .|++.|.+.   ......++....  ..+..+. .-+|.   ++++       
T Consensus        26 k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           26 RVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3678999999999999999999987  899999655   222222233221  2222221 11232   2222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tN  162 (356)
                      ...|++|..||.....   ..+   ....+..|+.....+.+.+...   ...+.||++|.
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS  162 (269)
T 3gk3_A          102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGS  162 (269)
T ss_dssp             SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            3789999999865321   122   2334556665554444444321   24577777765

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.46  E-value=0.017  Score=54.37  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~   80 (356)
                      +++.|+||+|.+|..++..|+..|.  +|+++| ++.
T Consensus        47 k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           47 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            4799999999999999999999987  899999 765

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.46  E-value=0.015  Score=53.73  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D-~~~   80 (356)
                      +++.|+||+|.+|..++..|+..|.  +|+++| ++.
T Consensus        10 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A           10 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            4799999999999999999999987  899999 765

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.42  E-value=0.022  Score=51.96  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.
T Consensus        31 k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           31 ASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            4789999999999999999999987  899999976

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.40  E-value=0.01  Score=56.67  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|||. |.+|+.+|..+...|.  +|..+|++....       .    ....   ..++++.+++||+|++..-.
T Consensus       170 ~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-------~----~~~~---~~sl~ell~~aDvVil~vP~  232 (340)
T 4dgs_A          170 KGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG-------V----DWIA---HQSPVDLARDSDVLAVCVAA  232 (340)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT-------S----CCEE---CSSHHHHHHTCSEEEECC--
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc-------c----Ccee---cCCHHHHHhcCCEEEEeCCC
Confidence            4579999999 9999999999987776  999999875220       0    1111   24678999999999997521


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  167 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~  167 (356)
                        .+ .        +..++.  .+.+....|++++|+++  .++|.-
T Consensus       233 --t~-~--------t~~li~--~~~l~~mk~gailIN~aRG~vvde~  266 (340)
T 4dgs_A          233 --SA-A--------TQNIVD--ASLLQALGPEGIVVNVARGNVVDED  266 (340)
T ss_dssp             -------------------C--HHHHHHTTTTCEEEECSCC------
T ss_pred             --CH-H--------HHHHhh--HHHHhcCCCCCEEEECCCCcccCHH
Confidence              11 1        111110  12233344789999986  555543

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.40  E-value=0.0096  Score=54.09  Aligned_cols=106  Identities=19%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------CCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------TGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------~~a  113 (356)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.....     .    ..+..+.. -+|   .++++       ...
T Consensus        29 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~-----~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   97 (260)
T 3un1_A           29 KVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSA-----D----PDIHTVAGDISKPETADRIVREGIERFGRI   97 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCS-----S----TTEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcc-----c----CceEEEEccCCCHHHHHHHHHHHHHHCCCC
Confidence            4799999999999999999999988  9999998751100     0    01111110 112   22222       389


Q ss_pred             cEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 018433          114 DLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  162 (356)
Q Consensus       114 DiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN  162 (356)
                      |++|..||......   .+   ....+..|+.....+.+.+    .+. ..+.|+++|.
T Consensus        98 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS  155 (260)
T 3un1_A           98 DSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITT  155 (260)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEec
Confidence            99999998753221   12   2344566766555555544    433 4566777654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.40  E-value=0.012  Score=54.27  Aligned_cols=114  Identities=17%  Similarity=0.045  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC---CCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALT---GMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~---~aDiV  116 (356)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ++.+.. ...+..+.. -+|   .+++++   ..|++
T Consensus        16 gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l   90 (291)
T 3rd5_A           16 QRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGE--AAARTM-AGQVEVRELDLQDLSSVRRFADGVSGADVL   90 (291)
T ss_dssp             TCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            45899999999999999999999987  8999998762211  111111 123333221 123   223333   56999


Q ss_pred             EEcCCCCCCC----CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          117 IIPAGVPRKP----GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       117 Ii~ag~~~~~----g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      |..||.....    ...-...+..|......+.+.+...-.. .||++|..
T Consensus        91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~  140 (291)
T 3rd5_A           91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSM  140 (291)
T ss_dssp             EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCG
T ss_pred             EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeech
Confidence            9999864321    1223356788888888888888766433 56666543

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.006  Score=55.09  Aligned_cols=114  Identities=16%  Similarity=0.175  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh-------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al-------~  111 (356)
                      +++.|+||+|.+|.+++..|+..+....|++.++++  +.....++.     ..+..+.. -+|   .++++       .
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG-----DRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG-----GGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            378999999999999999998876434888899875  222222221     12222111 122   22222       3


Q ss_pred             CCcEEEEcCCCCCC--C--CCc---HHHHHHHHHHHHHHHH----HHHHHhCCCcEEEEecCCCC
Q 018433          112 GMDLVIIPAGVPRK--P--GMT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       112 ~aDiVIi~ag~~~~--~--g~~---r~~~~~~N~~i~~~i~----~~i~~~~p~a~viv~tNPv~  165 (356)
                      ..|++|..||....  +  ..+   ....+..|+.....+.    +.+++..  +.||++|.-..
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~  140 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDAC  140 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCC
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchh
Confidence            78999999986322  1  122   2234555655444444    4445543  77777765443

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.36  E-value=0.008  Score=55.57  Aligned_cols=154  Identities=18%  Similarity=0.200  Sum_probs=80.0

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCchhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEE
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L-~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      +-++++||+|+||+|.+|+.++..+...+-. +|+- +|.+.....-.|...... ...+.   .++|+++.+.++|+||
T Consensus         3 ~~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~---v~~dl~~ll~~~DVVI   78 (272)
T 4f3y_A            3 GSMSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVA---LTDDIERVCAEADYLI   78 (272)
T ss_dssp             ---CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCB---CBCCHHHHHHHCSEEE
T ss_pred             CCccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCce---ecCCHHHHhcCCCEEE
Confidence            3356789999997799999999888876533 5554 687641111112222111 11222   2468888889999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-chhh---
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD---  193 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t~ld---  193 (356)
                      .... |               ....+.++.+.+..-+  ++ ++++- ...... +.+.++..- ..-+++. -.+.   
T Consensus        79 DfT~-p---------------~a~~~~~~~al~~G~~--vV-igTTG-~s~~~~-~~L~~aa~~-~~vv~a~N~s~Gv~l  136 (272)
T 4f3y_A           79 DFTL-P---------------EGTLVHLDAALRHDVK--LV-IGTTG-FSEPQK-AQLRAAGEK-IALVFSANMSVGVNV  136 (272)
T ss_dssp             ECSC-H---------------HHHHHHHHHHHHHTCE--EE-ECCCC-CCHHHH-HHHHHHTTT-SEEEECSCCCHHHHH
T ss_pred             EcCC-H---------------HHHHHHHHHHHHcCCC--EE-EECCC-CCHHHH-HHHHHHhcc-CCEEEECCCCHHHHH
Confidence            8641 1               1233444444444433  22 33221 111111 122333220 0113322 1121   


Q ss_pred             HHHHHHHHHHHhCCCCCCCcccEEecccC
Q 018433          194 VVRANTFVAEVLGLDPRDVDVPVVGGHAG  222 (356)
Q Consensus       194 ~~R~~~~la~~l~v~~~~v~~~viG~hg~  222 (356)
                      -.+|...+|+.|+   .+.++.|+=-|+.
T Consensus       137 ~~~~~~~aa~~l~---~~~diei~E~HH~  162 (272)
T 4f3y_A          137 TMKLLEFAAKQFA---QGYDIEIIEAHHR  162 (272)
T ss_dssp             HHHHHHHHHHHTS---SSCEEEEEEEECT
T ss_pred             HHHHHHHHHHhcC---cCCCEEEEEecCC
Confidence            2356677888885   4667888888886

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.33  E-value=0.017  Score=52.13  Aligned_cols=115  Identities=12%  Similarity=0.053  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC-------
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENALT-------  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~-------  111 (356)
                      +++.|+||+|.+|.+++..|+..|.  +|++++.+..  .....++.... ...+..+.. -+|   .+++++       
T Consensus         8 k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            8 RHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999987  8999987651  11222222111 123333211 122   222333       


Q ss_pred             CCcEEEEcCCC--CC-CC--CCc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 018433          112 GMDLVIIPAGV--PR-KP--GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNP  163 (356)
Q Consensus       112 ~aDiVIi~ag~--~~-~~--g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP  163 (356)
                      ..|++|..||.  .. .+  ..+   -...+..|+.....+.+.+    ++. ..+.|+++|..
T Consensus        85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~  147 (264)
T 3i4f_A           85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQ  147 (264)
T ss_dssp             CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred             CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeec
Confidence            78999999983  21 11  112   2344566665555555544    444 35677777643

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.31  E-value=0.036  Score=50.48  Aligned_cols=111  Identities=19%  Similarity=0.155  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhhh-------
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~al-------  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.  ......++..      +..+. .-+|.   ++++       
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRF   80 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC------CeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999875  2222222211      11111 11222   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tN  162 (356)
                      ...|++|..+|.....+    .+   ....+..|+.....+.+.+..+-  ..+.||++|.
T Consensus        81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  141 (270)
T 1yde_A           81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISS  141 (270)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence            37899999998643211    12   23445666665555555443221  1467777764

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.31  E-value=0.00064  Score=60.01  Aligned_cols=63  Identities=14%  Similarity=0.142  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .|||+|||+ |.+|+.++..|...+.  +|.++|++..   ...+...    .+..   . +..++++++|+||++.
T Consensus        19 ~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g~~~---~-~~~~~~~~aDvVilav   81 (201)
T 2yjz_A           19 QGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----GAEV---L-CYSEAASRSDVIVLAV   81 (201)
Confidence            468999999 9999999999988776  8889988642   1112111    1121   2 4467789999999985

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.30  E-value=0.028  Score=50.02  Aligned_cols=110  Identities=14%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhh-------hhCCCcEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLEN-------ALTGMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~-------al~~aDiV  116 (356)
                      +++.|+||+|.+|..++..|+..|.  +|+++|++... ...++. .   ..+.. ... .+.++       .+...|++
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~-~---~~~~~D~~~-~~~~~~~~~~~~~~g~id~l   74 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG-A---VPLPTDLEK-DDPKGLVKRALEALGGLHVL   74 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT-C---EEEECCTTT-SCHHHHHHHHHHHHTSCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC-c---EEEecCCch-HHHHHHHHHHHHHcCCCCEE
Confidence            4799999999999999999999987  89999998622 222221 1   00110 000 12222       24589999


Q ss_pred             EEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 018433          117 IIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNP  163 (356)
Q Consensus       117 Ii~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  163 (356)
                      |..+|.....   ..+   ....+..|+.....+.+.    +.+. ..+.||++|..
T Consensus        75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~  130 (239)
T 2ekp_A           75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEA-GWGRVLFIGSV  130 (239)
T ss_dssp             EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECch
Confidence            9999864321   112   233455565554444444    4443 35677777643

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.25  E-value=0.012  Score=56.37  Aligned_cols=74  Identities=19%  Similarity=0.339  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...+|+|||+ |.+|...+..|+......+|.++|++.  ++..+.++... ....+..   .+++++++++||+||++.
T Consensus       128 ~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~---~~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          128 NARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             TCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             cCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE---eCCHHHHHhcCCEEEEec
Confidence            3459999999 999999887765433356999999976  34444444321 1122332   357889999999999975


Q ss_pred             C
Q 018433          121 G  121 (356)
Q Consensus       121 g  121 (356)
                      .
T Consensus       203 p  203 (350)
T 1x7d_A          203 A  203 (350)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.25  E-value=0.0061  Score=58.29  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=48.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~-~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      ...++|+|||. |.+|..++..+. ..|.  +|+.+|++. ......++       .+..   .+++++.+++||+|++.
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvVil~  227 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKAL-------GAER---VDSLEELARRSDCVSVS  227 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHH-------TCEE---CSSHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhc-------CcEE---eCCHHHHhccCCEEEEe
Confidence            34579999999 999999999998 7776  999999876 22222111       1121   23677889999999998


Q ss_pred             C
Q 018433          120 A  120 (356)
Q Consensus       120 a  120 (356)
                      .
T Consensus       228 v  228 (348)
T 2w2k_A          228 V  228 (348)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.24  E-value=0.011  Score=54.65  Aligned_cols=79  Identities=15%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~  119 (356)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++.  +...+.++........+.. .....+.+++++++|+||.+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence            456899999779999999999999886  799999875  2333333322110011111 11112345678899999999


Q ss_pred             CCCC
Q 018433          120 AGVP  123 (356)
Q Consensus       120 ag~~  123 (356)
                      +|..
T Consensus       196 ag~g  199 (287)
T 1lu9_A          196 GAIG  199 (287)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            8753

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.21  E-value=0.0013  Score=60.60  Aligned_cols=63  Identities=11%  Similarity=0.154  Sum_probs=36.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||+ |.+|..++..|... .  +| .++|+++..  ...+.... ..   .   ++|++++++++|+||++.
T Consensus         3 m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~--~~~~~~~~-g~---~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            3 LVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDR--ARNLAEVY-GG---K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             -CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHH--HHHHHHHT-CC---C---CCSSCCCCC---CEEECS
T ss_pred             ceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHH--HHHHHHHc-CC---c---cCCHHHHHhcCCEEEEeC
Confidence            68999999 99999999888766 4  77 489987521  11222111 11   1   245566788999999985

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.20  E-value=0.0037  Score=55.23  Aligned_cols=143  Identities=16%  Similarity=0.180  Sum_probs=85.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      +++.|+||+|.+|.+++..|+..|.  .|++.|++..    .|+.+..   .+.      ..-+.+...|++|..+|...
T Consensus         7 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~---~v~------~~~~~~g~id~lv~nAg~~~   71 (223)
T 3uce_A            7 TVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEK---SVY------HYFETIGAFDHLIVTAGSYA   71 (223)
T ss_dssp             EEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHH---HHH------HHHHHHCSEEEEEECCCCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHH---HHH------HHHHHhCCCCEEEECCCCCC
Confidence            4789999999999999999998887  8999987642    2222211   000      11123457899999998642


Q ss_pred             CC----CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHH
Q 018433          125 KP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  196 (356)
Q Consensus       125 ~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R  196 (356)
                      ..    ..+   ....+..|+.....+.+.+..+- +.+.|+++|......            +.+..-.++.+......
T Consensus        72 ~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------~~~~~~~Y~asK~a~~~  139 (223)
T 3uce_A           72 PAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK------------VVANTYVKAAINAAIEA  139 (223)
T ss_dssp             CCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS------------CCTTCHHHHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc------------CCCCchHHHHHHHHHHH
Confidence            21    122   23456778888888887776654 356777776432211            22222223333333345


Q ss_pred             HHHHHHHHhCCCCCCCcccEEe
Q 018433          197 ANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       197 ~~~~la~~l~v~~~~v~~~viG  218 (356)
                      +-+.+++.++-    |++..+.
T Consensus       140 ~~~~la~e~~~----i~vn~v~  157 (223)
T 3uce_A          140 TTKVLAKELAP----IRVNAIS  157 (223)
T ss_dssp             HHHHHHHHHTT----SEEEEEE
T ss_pred             HHHHHHHhhcC----cEEEEEE
Confidence            66677777752    5544443

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.20  E-value=0.11  Score=47.28  Aligned_cols=120  Identities=18%  Similarity=0.181  Sum_probs=72.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---------hhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFLG-QPQL---ENA-  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~---------~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-  109 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++..         .....++...  ...+..+.. -+|.   ++. 
T Consensus         6 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            6 GKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHH
Confidence            45899999999999999999999987  8999998751         1122222221  123322211 1222   122 


Q ss_pred             ------hCCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCcc
Q 018433          110 ------LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNST  167 (356)
Q Consensus       110 ------l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~  167 (356)
                            +...|++|..||......   .+   ....+..|+.....+.+.+..+   ...+.||++|......
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~  154 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLN  154 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcC
Confidence                  237899999998753221   12   2334566766655555554432   3457888887766544

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.19  E-value=0.028  Score=50.40  Aligned_cols=71  Identities=10%  Similarity=0.058  Sum_probs=48.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      ++|.|||+ |.+|...+..|+..|.  +|.++|.+... ...++....   .+......-+ ++.+.++|+||.+.+.+
T Consensus        32 k~VLVVGg-G~va~~ka~~Ll~~GA--~VtVvap~~~~-~l~~l~~~~---~i~~i~~~~~-~~dL~~adLVIaAT~d~  102 (223)
T 3dfz_A           32 RSVLVVGG-GTIATRRIKGFLQEGA--AITVVAPTVSA-EINEWEAKG---QLRVKRKKVG-EEDLLNVFFIVVATNDQ  102 (223)
T ss_dssp             CCEEEECC-SHHHHHHHHHHGGGCC--CEEEECSSCCH-HHHHHHHTT---SCEEECSCCC-GGGSSSCSEEEECCCCT
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCCCH-HHHHHHHcC---CcEEEECCCC-HhHhCCCCEEEECCCCH
Confidence            48999999 9999999999998886  89999976422 223343321   2233222223 36789999999886654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.17  E-value=0.015  Score=52.92  Aligned_cols=33  Identities=33%  Similarity=0.538  Sum_probs=29.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|+|+ |.+|+.++..|+..|. .+|.|+|.+.
T Consensus        30 ~VlvvG~-GglG~~va~~La~~Gv-g~i~lvD~d~   62 (251)
T 1zud_1           30 QVLIIGL-GGLGTPAALYLAGAGV-GTLVLADDDD   62 (251)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTC-SEEEEECCCB
T ss_pred             cEEEEcc-CHHHHHHHHHHHHcCC-CeEEEEeCCC
Confidence            9999999 9999999999999886 4999999764

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.17  E-value=0.0078  Score=56.55  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..++|+|||+ |.+|..++..|+......+|.++|++.  .+..+.++..     .+..   .+++++++++||+||++.
T Consensus       134 ~~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~-----~~~~---~~~~~e~v~~aDiVi~at  204 (312)
T 2i99_A          134 SSEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG-----EVRV---CSSVQEAVAGADVIITVT  204 (312)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS-----CCEE---CSSHHHHHTTCSEEEECC
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC-----CeEE---eCCHHHHHhcCCEEEEEe
Confidence            4569999999 999999998887652245899999875  2222222111     2332   357788999999999875

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.11  E-value=0.0082  Score=57.56  Aligned_cols=99  Identities=20%  Similarity=0.241  Sum_probs=64.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|+|||. |.+|..+|..|..-|.  +|+.+|.+. ....+.++.       +..   ..++++.+++||+|++..
T Consensus       162 l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~  228 (351)
T 3jtm_A          162 LEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKF---VEDLNEMLPKCDVIVINM  228 (351)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEE---CSCHHHHGGGCSEEEECS
T ss_pred             ccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeE---cCCHHHHHhcCCEEEECC
Confidence            45679999999 9999999999987676  899999875 222222221       121   246788999999999985


Q ss_pred             CC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433          121 GV-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  167 (356)
Q Consensus       121 g~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~  167 (356)
                      -. +...+.-       |    .+   .+...-|++++|+++  .++|.-
T Consensus       229 Plt~~t~~li-------~----~~---~l~~mk~gailIN~aRG~~vde~  264 (351)
T 3jtm_A          229 PLTEKTRGMF-------N----KE---LIGKLKKGVLIVNNARGAIMERQ  264 (351)
T ss_dssp             CCCTTTTTCB-------S----HH---HHHHSCTTEEEEECSCGGGBCHH
T ss_pred             CCCHHHHHhh-------c----HH---HHhcCCCCCEEEECcCchhhCHH
Confidence            32 2211221       1    11   223334799999996  555543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.09  E-value=0.027  Score=55.38  Aligned_cols=92  Identities=15%  Similarity=0.109  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ..++|+|+|. |.+|..+|..|...|.  +|+.+|+++... .+.  .+ .  .  ..    .++++++++||+|+.+.+
T Consensus       210 ~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~--~~-G--~--~~----~sL~eal~~ADVVilt~g  275 (436)
T 3h9u_A          210 AGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAA--ME-G--Y--QV----LLVEDVVEEAHIFVTTTG  275 (436)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH--HT-T--C--EE----CCHHHHTTTCSEEEECSS
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHH--Hh-C--C--ee----cCHHHHHhhCCEEEECCC
Confidence            4679999999 9999999999987776  899999975221 111  11 1  1  11    257899999999998754


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      ...--+.                 +.+....|+++|++++++..
T Consensus       276 t~~iI~~-----------------e~l~~MK~gAIVINvgRg~v  302 (436)
T 3h9u_A          276 NDDIITS-----------------EHFPRMRDDAIVCNIGHFDT  302 (436)
T ss_dssp             CSCSBCT-----------------TTGGGCCTTEEEEECSSSGG
T ss_pred             CcCccCH-----------------HHHhhcCCCcEEEEeCCCCC
Confidence            3211111                 12333457899999997753

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.07  E-value=0.0057  Score=57.99  Aligned_cols=67  Identities=18%  Similarity=0.194  Sum_probs=48.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...++|+|||. |.+|..++..+...|.  +|+.+|++......  ....    .+..   . ++.+.+++||+|+++..
T Consensus       153 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~--~~~~----g~~~---~-~l~e~l~~aDvVi~~vp  219 (330)
T 2gcg_A          153 LTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEE--AAEF----QAEF---V-STPELAAQSDFIVVACS  219 (330)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHH--HHTT----TCEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhH--HHhc----Ccee---C-CHHHHHhhCCEEEEeCC
Confidence            34579999999 9999999999987776  89999987521111  1111    1221   2 56788999999999864

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.05  E-value=0.0064  Score=55.88  Aligned_cols=151  Identities=20%  Similarity=0.166  Sum_probs=81.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---hhh-------h
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a-------l  110 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  +.....++   .  ..+..+. .-+|.   +++       +
T Consensus         5 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (281)
T 3zv4_A            5 GEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSAERLRELEVAH---G--GNAVGVVGDVRSLQDQKRAAERCLAAF   77 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT---B--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHc---C--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999987  999999875  22222111   1  1222211 11222   122       3


Q ss_pred             CCCcEEEEcCCCCCCCC--------Cc---HHHHHHHHHHHHHHH----HHHHHHhCCCcEEEEecCCCCccHHHHHHHH
Q 018433          111 TGMDLVIIPAGVPRKPG--------MT---RDDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPVNSTVPIAAEVF  175 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g--------~~---r~~~~~~N~~i~~~i----~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~  175 (356)
                      ...|++|..||.....+        .+   ....+..|+.....+    .+.+.+.  .+.||+++.-....        
T Consensus        78 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------  147 (281)
T 3zv4_A           78 GKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSS--RGSVVFTISNAGFY--------  147 (281)
T ss_dssp             SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCGGGTS--------
T ss_pred             CCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCeEEEEecchhcc--------
Confidence            36799999998642111        11   123445565544444    4444433  36666665432211        


Q ss_pred             HHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          176 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       176 ~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                          +.+..-.++.+......+-+.+|..++  +. |++..+.
T Consensus       148 ----~~~~~~~Y~asKaa~~~l~~~la~e~~--~~-Irvn~v~  183 (281)
T 3zv4_A          148 ----PNGGGPLYTATKHAVVGLVRQMAFELA--PH-VRVNGVA  183 (281)
T ss_dssp             ----SSSSCHHHHHHHHHHHHHHHHHHHHHT--TT-SEEEEEE
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHhc--CC-CEEEEEE
Confidence                122222233333333456677788875  33 6554443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.05  E-value=0.019  Score=53.26  Aligned_cols=77  Identities=21%  Similarity=0.277  Sum_probs=53.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .+..++.|+|| |-+|.+++..|+..|. .+|+++|++.  ++..+.++........+... ...+++++++++|+||.+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~-~~~~l~~~l~~~DiVIna  201 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGV-DARGIEDVIAAADGVVNA  201 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHHTSCCEEEE-CSTTHHHHHHHSSEEEEC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhhcCCceEEEc-CHHHHHHHHhcCCEEEEC
Confidence            45569999999 9999999999988764 4799999876  33344444322111234333 124677888999999997


Q ss_pred             CC
Q 018433          120 AG  121 (356)
Q Consensus       120 ag  121 (356)
                      ..
T Consensus       202 Tp  203 (283)
T 3jyo_A          202 TP  203 (283)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.05  E-value=0.014  Score=52.39  Aligned_cols=107  Identities=17%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh-------CC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG  112 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al-------~~  112 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++...      ...  .  +..+. .-+|   .++++       ..
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~------~~~--~--~~~~~~D~~d~~~~~~~~~~~~~~~g~   74 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQ------EQY--P--FATEVMDVADAAQVAQVCQRLLAETER   74 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCS------SCC--S--SEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhh------hcC--C--ceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999987  89999987521      110  0  11110 1122   22233       37


Q ss_pred             CcEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecCC
Q 018433          113 MDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNP  163 (356)
Q Consensus       113 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tNP  163 (356)
                      .|++|..+|.....   ..+   ....+..|+.....+.+.+    ++. ..+.||++|.-
T Consensus        75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~  134 (250)
T 2fwm_X           75 LDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQ-RGGAIVTVASD  134 (250)
T ss_dssp             CCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCG
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhc-CCCEEEEECch
Confidence            89999999864321   112   2344556665554444444    444 34667777643

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.03  E-value=0.03  Score=50.05  Aligned_cols=146  Identities=16%  Similarity=0.117  Sum_probs=82.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhhC-----
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT-----  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~-~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al~-----  111 (356)
                      .+++.|+||+|.+|.+++..|+..|.  .+++.+.+ .  ......++....  ..+..+.. -+|.   ++.++     
T Consensus         7 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (255)
T 3icc_A            7 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNE   82 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999987  78776443 3  233334444322  22222211 1222   11111     


Q ss_pred             --------CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHH
Q 018433          112 --------GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK  176 (356)
Q Consensus       112 --------~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~  176 (356)
                              ..|++|..||......   .+   ....+..|+.....+.+.+...- +.+.|+++|......         
T Consensus        83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~---------  153 (255)
T 3icc_A           83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI---------  153 (255)
T ss_dssp             HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS---------
T ss_pred             hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc---------
Confidence                    2899999998643211   11   23445677777777777766542 356788777544321         


Q ss_pred             HhCCCCCCCEEEechhhHHHHHHHHHHHh
Q 018433          177 KAGTYDPKKLLGVTMLDVVRANTFVAEVL  205 (356)
Q Consensus       177 ~~~~~~~~kviG~t~ld~~R~~~~la~~l  205 (356)
                         +.|..-.++.+......+-+.++..+
T Consensus       154 ---~~~~~~~Y~asKaa~~~~~~~la~e~  179 (255)
T 3icc_A          154 ---SLPDFIAYSMTKGAINTMTFTLAKQL  179 (255)
T ss_dssp             ---CCTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCCcchhHHhHHHHHHHHHHHHHHH
Confidence               23332233333333344566667766

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.01  E-value=0.0055  Score=54.89  Aligned_cols=151  Identities=13%  Similarity=0.138  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCc-hhHHHHHhcCCCCCeEEEEeCCCChhhhhC-----CCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALT-----GMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-----~aDiV  116 (356)
                      .+++.|+||+|.+|.+++..|+. .+.  .+++.|+++. .........+    ++.   ...+.+++++     ..|++
T Consensus         4 ~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~----Dv~---~~~~v~~~~~~~~~~~id~l   74 (244)
T 4e4y_A            4 MANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKA----DLT---KQQDITNVLDIIKNVSFDGI   74 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEEC----CTT---CHHHHHHHHHHTTTCCEEEE
T ss_pred             CCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEec----CcC---CHHHHHHHHHHHHhCCCCEE
Confidence            34799999999999999999988 565  8889998752 1110000000    000   0011222222     78999


Q ss_pred             EEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          117 IIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       117 Ii~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      |..||.....   ..+   ....+..|+.....+.+.+...- ..+.||++|......            +.|..-.++.
T Consensus        75 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------~~~~~~~Y~a  142 (244)
T 4e4y_A           75 FLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI------------AKPNSFAYTL  142 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC------------CCTTBHHHHH
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc------------CCCCCchhHH
Confidence            9999874321   122   33456788888777777766553 235677765433211            1222222333


Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +......+-+.++..++  +..|++..+
T Consensus       143 sKaa~~~~~~~la~e~~--~~gi~v~~v  168 (244)
T 4e4y_A          143 SKGAIAQMTKSLALDLA--KYQIRVNTV  168 (244)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence            33333445666777663  334544333

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.01  E-value=0.0071  Score=54.60  Aligned_cols=113  Identities=15%  Similarity=0.090  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhh------CCCc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------TGMD  114 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al------~~aD  114 (356)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.|++. .....++.     ..+..+. .-+|   .++++      ...|
T Consensus        10 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~-~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~g~id   81 (257)
T 3tl3_A           10 AVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRG-EDVVADLG-----DRARFAAADVTDEAAVASALDLAETMGTLR   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC-HHHHHHTC-----TTEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCch-HHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence            4789999999999999999999887  899999854 22222221     1122211 1122   22222      3899


Q ss_pred             EEEEcCCCCCC---------CC-CcHHHHHHHHHHHHHHHHHHHHHh-----------CCCcEEEEecCCCC
Q 018433          115 LVIIPAGVPRK---------PG-MTRDDLFNINAGIVRTLCEGIAKC-----------CPNATVNLISNPVN  165 (356)
Q Consensus       115 iVIi~ag~~~~---------~g-~~r~~~~~~N~~i~~~i~~~i~~~-----------~p~a~viv~tNPv~  165 (356)
                      ++|..||....         .. .+....+..|+.....+.+.+..+           ...+.||++|.-..
T Consensus        82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  153 (257)
T 3tl3_A           82 IVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAA  153 (257)
T ss_dssp             EEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC-
T ss_pred             EEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhh
Confidence            99999986321         11 123345566776555555554433           33567888876554

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.91  E-value=0.023  Score=52.28  Aligned_cols=70  Identities=11%  Similarity=0.198  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      +.+||+|||+ |.+|..++..|...+.  +|.++|++..  .+.++.+..   .+..   ..++.++++++|+||.+...
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~--~~~~l~~~~---g~~~---~~~~~~~~~~aDiVi~atp~  196 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKE--KAIKLAQKF---PLEV---VNSPEEVIDKVQVIVNTTSV  196 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHH--HHHHHTTTS---CEEE---CSCGGGTGGGCSEEEECSST
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHH--HHHHHHHHc---CCee---ehhHHhhhcCCCEEEEeCCC
Confidence            4579999999 9999999999988886  9999998642  223333321   1332   23667888999999998654


Q ss_pred             C
Q 018433          123 P  123 (356)
Q Consensus       123 ~  123 (356)
                      +
T Consensus       197 ~  197 (275)
T 2hk9_A          197 G  197 (275)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=95.91  E-value=0.088  Score=49.30  Aligned_cols=155  Identities=13%  Similarity=0.148  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC---------C--chhHHHHHhcCCCCCeEEE-EeCCCChhhh--
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV---------N--TPGVTADISHMDTGAVVRG-FLGQPQLENA--  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~---------~--~~g~~~dl~~~~~~~~v~~-~~~t~d~~~a--  109 (356)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|..         .  ......++....  ..... .....+.++.  
T Consensus         9 gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~--~~~~~D~~~~~~~~~~~~   84 (319)
T 1gz6_A            9 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GKAVANYDSVEAGEKLVK   84 (319)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CEEEEECCCGGGHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhC--CeEEEeCCCHHHHHHHHH
Confidence            35799999999999999999999987  89998863         2  222233443321  11111 1111111122  


Q ss_pred             -----hCCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433          110 -----LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEV  174 (356)
Q Consensus       110 -----l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~~~t~~~~~~  174 (356)
                           +...|++|..||......   .+   ....+..|......+.+.    +++. ..+.||++|.-...        
T Consensus        85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~grIV~vsS~~~~--------  155 (319)
T 1gz6_A           85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTASASGI--------  155 (319)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH--------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECChhhc--------
Confidence                 347899999999754321   22   223456666654444444    4443 34677777643210        


Q ss_pred             HHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          175 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       175 ~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                         . +.+....++.+......+-+.+++.+.  +..|++..+
T Consensus       156 ---~-~~~~~~~Y~aSK~a~~~~~~~la~el~--~~gI~vn~v  192 (319)
T 1gz6_A          156 ---Y-GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHCNTI  192 (319)
T ss_dssp             ---H-CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             ---c-CCCCCHHHHHHHHHHHHHHHHHHHHhc--ccCEEEEEE
Confidence               0 122222333333334445566676653  344544444

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=95.90  E-value=0.23  Score=44.96  Aligned_cols=115  Identities=16%  Similarity=0.212  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCCh---hhh--hCCCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENA--LTGMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d~---~~a--l~~aDiVIi  118 (356)
                      +.+.|+||++-+|..++..|+..|.  .|++.|++..+.....+....  .+...+. .-+|.   ++.  .-.-|++|.
T Consensus        10 KvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVN   85 (247)
T 4hp8_A           10 RKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDILVN   85 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCEEEE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            3567889999999999999999998  899999986433333333322  1222211 11221   111  134799999


Q ss_pred             cCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 018433          119 PAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       119 ~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      .||......   .+   ....+..|+..    .+..++.+.+....+.||+++.-
T Consensus        86 NAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~  140 (247)
T 4hp8_A           86 NAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASL  140 (247)
T ss_dssp             CCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEech
Confidence            998753221   12   33445566544    45556666666667888888653

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.88  E-value=0.077  Score=48.36  Aligned_cols=155  Identities=14%  Similarity=0.164  Sum_probs=88.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  111 (356)
                      +.+.|+||++-+|..+|..|+..|.  .|+++|+++  ++..+.++....  .++..+.. -+|.          .+.+-
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   83 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETYS   83 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4678889999999999999999987  899999987  444455555432  22222111 1221          12345


Q ss_pred             CCcEEEEcCCCCC--CC--CCc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 GMDLVIIPAGVPR--KP--GMT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 ~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      .-|++|..||...  ++  ..+   ....+..|+    ...+..++.+.+.. .+.||+++.-....            +
T Consensus        84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~~------------~  150 (254)
T 4fn4_A           84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGIR------------G  150 (254)
T ss_dssp             CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC------------S
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhcC------------C
Confidence            7899999998532  22  122   233445554    44556666666544 67788876433221            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .|..=.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       151 ~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V~  186 (254)
T 4fn4_A          151 GFAGAPYTVAKHGLIGLTRSIAAHYG--DQGIRAVAVL  186 (254)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEEE
Confidence            11111122222223345677777774  5566554443

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=95.83  E-value=0.014  Score=54.88  Aligned_cols=72  Identities=17%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ..+|+|||+ |.+|...+..|.....+.+|.++|++.+...+.++.+.. ...+..   . ++++++++||+||.+..
T Consensus       121 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~~---~-~~~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          121 SSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPARM---A-APADIAAQADIVVTATR  192 (313)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEEE---e-CHHHHHhhCCEEEEccC
Confidence            458999999 999999988887643467999999985445555554321 123332   2 67899999999999754

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.81  E-value=0.031  Score=54.07  Aligned_cols=118  Identities=18%  Similarity=0.220  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC----C-chh-----HHHHHhcCCCCCeEEEEeCCCChhhhh
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV----N-TPG-----VTADISHMDTGAVVRGFLGQPQLENAL  110 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~----~-~~g-----~~~dl~~~~~~~~v~~~~~t~d~~~al  110 (356)
                      ..+..||+|+|| |.+|..++..|...|. .+|+++|++    . ...     ....+.+.. ..    .....++.+++
T Consensus       189 ~l~~~kVVv~GA-GaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~-~~----~~~~~~L~eav  261 (388)
T 1vl6_A          189 KIEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARIT-NP----ERLSGDLETAL  261 (388)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTS-CT----TCCCSCHHHHH
T ss_pred             CCCCcEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHhh-hc----cCchhhHHHHH
Confidence            467789999999 9999999998887764 689999997    2 110     112222211 11    11235789999


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      +++|++|=+.+ |   +.-.           +++.+.+   +++.+|+=.+||.--.++   +..++. |   ..++++.
T Consensus       262 ~~ADVlIG~Sa-p---~l~t-----------~emVk~M---a~~pIIfalSNPt~E~~p---~~a~~~-g---~~i~atG  316 (388)
T 1vl6_A          262 EGADFFIGVSR-G---NILK-----------PEWIKKM---SRKPVIFALANPVPEIDP---ELAREA-G---AFIVATG  316 (388)
T ss_dssp             TTCSEEEECSC-S---SCSC-----------HHHHTTS---CSSCEEEECCSSSCSSCH---HHHHHT-T---CSEEEES
T ss_pred             ccCCEEEEeCC-C---CccC-----------HHHHHhc---CCCCEEEEcCCCCCCCCH---HHHHHh-c---CeEEEeC
Confidence            99999988765 4   3211           1333332   257788778999866654   233443 3   3677764

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.81  E-value=0.016  Score=52.62  Aligned_cols=114  Identities=14%  Similarity=0.099  Sum_probs=69.1

Q ss_pred             CCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCCC---hhhhhC------
Q 018433           44 GFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------  111 (356)
Q Consensus        44 ~~KI~IIGa--~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~d---~~~al~------  111 (356)
                      .+++.|+||  +|.+|.+++..|+..|.  +|++.|++.... ..++.+.. ...+..+. .-+|   .+++++      
T Consensus         7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            7 GKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI   82 (269)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence            347999998  79999999999999987  899999876211 11122111 11111111 1122   222333      


Q ss_pred             ----CCcEEEEcCCCCCC------C--CCc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433          112 ----GMDLVIIPAGVPRK------P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  161 (356)
Q Consensus       112 ----~aDiVIi~ag~~~~------~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  161 (356)
                          ..|++|..||....      +  ..+   ....+..|+.....+.+.+..+- +.+.||++|
T Consensus        83 g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           83 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence                78999999986531      1  112   23456678887777777776543 346777775

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.80  E-value=0.022  Score=54.42  Aligned_cols=98  Identities=21%  Similarity=0.307  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|.........++     .  +..   ..++++.++.||+|++...
T Consensus       166 l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-----g--~~~---~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          166 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERAL-----G--LQR---VSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHH-----T--CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhc-----C--Cee---cCCHHHHHhcCCEEEEcCC
Confidence            45679999999 9999999999987776  89999986532222211     1  111   1357788999999999753


Q ss_pred             CC-CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 018433          122 VP-RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  166 (356)
Q Consensus       122 ~~-~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~  166 (356)
                      .. ...+.     +  |    .   +.+....|++++|+++  .++|.
T Consensus       233 ~t~~t~~l-----i--~----~---~~l~~mk~gailIN~arg~~vd~  266 (347)
T 1mx3_A          233 LNEHNHHL-----I--N----D---FTVKQMRQGAFLVNTARGGLVDE  266 (347)
T ss_dssp             CCTTCTTS-----B--S----H---HHHTTSCTTEEEEECSCTTSBCH
T ss_pred             CCHHHHHH-----h--H----H---HHHhcCCCCCEEEECCCChHHhH
Confidence            21 11111     0  0    1   1223334788999986  44553

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.80  E-value=0.0098  Score=58.02  Aligned_cols=110  Identities=20%  Similarity=0.260  Sum_probs=66.6

Q ss_pred             hccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCCCe---------EEEEeC----
Q 018433           37 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAV---------VRGFLG----  102 (356)
Q Consensus        37 ~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~~~---------v~~~~~----  102 (356)
                      ++.++.++.||+|||+ |.+|...+..+...|.  +|..+|++.. ...+.++.-......         ...+..    
T Consensus       183 t~~g~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~  259 (405)
T 4dio_A          183 TAAGTVPAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSG  259 (405)
T ss_dssp             ETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECCCCC-----------------C
T ss_pred             ccCCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcch
Confidence            4556678899999999 9999999999887776  8999999872 223333211000000         001110    


Q ss_pred             ------CCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          103 ------QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       103 ------t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                            ..++.+++++||+||.++..|.+....   ++      .++.   ++.-.|.++|+.++
T Consensus       260 ~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~---Lv------t~em---v~~Mk~GsVIVDvA  312 (405)
T 4dio_A          260 EYQVKQAALVAEHIAKQDIVITTALIPGRPAPR---LV------TREM---LDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCC---CB------CHHH---HTTSCTTCEEEETT
T ss_pred             hhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCE---Ee------cHHH---HhcCCCCCEEEEEe
Confidence                  124678899999999988766322210   00      0122   33334888888876

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.79  E-value=0.03  Score=54.99  Aligned_cols=92  Identities=14%  Similarity=0.186  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...+|+|+|. |.+|..++..+...|.  +|+.+|+++... .+.  .+.     ...    .++++++++||+||.+.|
T Consensus       219 ~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~--~~G-----~~v----~~Leeal~~ADIVi~atg  284 (435)
T 3gvp_A          219 GGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQAC--MDG-----FRL----VKLNEVIRQVDIVITCTG  284 (435)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH--HTT-----CEE----CCHHHHTTTCSEEEECSS
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHH--HcC-----CEe----ccHHHHHhcCCEEEECCC
Confidence            4579999999 9999999999987776  899999876221 111  111     111    257889999999999744


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      .+   +.-..           +   .+....|+++|++++.+..
T Consensus       285 t~---~lI~~-----------e---~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          285 NK---NVVTR-----------E---HLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             CS---CSBCH-----------H---HHHHSCTTEEEEECSSTTT
T ss_pred             Cc---ccCCH-----------H---HHHhcCCCcEEEEecCCCc
Confidence            32   22111           1   2223357899999986643

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.79  E-value=0.015  Score=55.56  Aligned_cols=97  Identities=25%  Similarity=0.332  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|||. |.+|..+|..+..-|.  +|..+|........   .. .    ...   ..++++.+++||+|++..-.
T Consensus       172 ~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~---~~-g----~~~---~~~l~ell~~sDvV~l~~Pl  237 (345)
T 4g2n_A          172 TGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHAL---EE-G----AIY---HDTLDSLLGASDIFLIAAPG  237 (345)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHH---HT-T----CEE---CSSHHHHHHTCSEEEECSCC
T ss_pred             CCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhh---hc-C----CeE---eCCHHHHHhhCCEEEEecCC
Confidence            3579999999 9999999999986666  99999987521111   11 1    111   24678899999999997532


Q ss_pred             -CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433          123 -PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  167 (356)
Q Consensus       123 -~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~  167 (356)
                       +...++     +  |    .   +.+...-|++++|+++  ..+|.-
T Consensus       238 t~~T~~l-----i--~----~---~~l~~mk~gailIN~aRG~~vde~  271 (345)
T 4g2n_A          238 RPELKGF-----L--D----H---DRIAKIPEGAVVINISRGDLINDD  271 (345)
T ss_dssp             CGGGTTC-----B--C----H---HHHHHSCTTEEEEECSCGGGBCHH
T ss_pred             CHHHHHH-----h--C----H---HHHhhCCCCcEEEECCCCchhCHH
Confidence             111111     0  1    1   1233344799999996  555544

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.79  E-value=0.016  Score=56.16  Aligned_cols=114  Identities=23%  Similarity=0.218  Sum_probs=68.5

Q ss_pred             hccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCe-----EEEEe---------
Q 018433           37 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAV-----VRGFL---------  101 (356)
Q Consensus        37 ~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~-----v~~~~---------  101 (356)
                      ++.++.++.||+|||+ |.+|...+..+...|.  +|..+|++. ....+.++--......     ...+.         
T Consensus       177 ~~~~~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~  253 (381)
T 3p2y_A          177 TAAGTVKPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERA  253 (381)
T ss_dssp             CSSCEECCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHH
T ss_pred             cccCCcCCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHh
Confidence            4566778899999999 9999999998887776  899999986 2223333210000000     00000         


Q ss_pred             -CCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          102 -GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       102 -~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                       ...++.+++++||+||.++..|.+....   ++      .++..+   .-.|.++|+.++-+-+
T Consensus       254 ~~~~~l~e~l~~aDIVI~tv~iPg~~ap~---Lv------t~emv~---~MkpGsVIVDvA~d~G  306 (381)
T 3p2y_A          254 QQQQALEDAITKFDIVITTALVPGRPAPR---LV------TAAAAT---GMQPGSVVVDLAGETG  306 (381)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCCTTSCCCC---CB------CHHHHH---TSCTTCEEEETTGGGT
T ss_pred             hhHHHHHHHHhcCCEEEECCCCCCcccce---ee------cHHHHh---cCCCCcEEEEEeCCCC
Confidence             0135678899999999987666322110   00      122333   3347888888874443

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.78  E-value=0.044  Score=54.65  Aligned_cols=118  Identities=18%  Similarity=0.137  Sum_probs=74.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-----hhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLG-QPQ---LENALT  111 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-----~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~  111 (356)
                      +.+..+|.|+||+|.+|..++..|+..+. ..|++++++..     .....++...  ...+..+.. -+|   ..++++
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~  299 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLG  299 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHH
Confidence            44567999999999999999999998775 25899998751     2223334432  234443321 123   334455


Q ss_pred             CC------cEEEEcCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          112 GM------DLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       112 ~a------DiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ..      |.||.++|.....   ..+   -...+..|+.....+.+.+.+. +...|+++|.
T Consensus       300 ~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~SS  361 (486)
T 2fr1_A          300 GIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFSS  361 (486)
T ss_dssp             TSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEE
T ss_pred             HHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEEcC
Confidence            54      9999999975422   122   2234567888888888877654 4455666553

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.78  E-value=0.053  Score=48.28  Aligned_cols=149  Identities=13%  Similarity=0.125  Sum_probs=72.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----------CChhhhhCCCc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----------PQLENALTGMD  114 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----------~d~~~al~~aD  114 (356)
                      +++.|+||+|.+|.+++..|+. +.  .++++|.+....  .++.+..   .+..+...          .+..+.+...|
T Consensus         6 k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~--~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~id   77 (245)
T 3e9n_A            6 KIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHL--AALAEIE---GVEPIESDIVKEVLEEGGVDKLKNLDHVD   77 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHH--HHHHTST---TEEEEECCHHHHHHTSSSCGGGTTCSCCS
T ss_pred             CEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHH--HHHHhhc---CCcceecccchHHHHHHHHHHHHhcCCCC
Confidence            4799999999999999999976 54  899999875111  1122211   11111100          01112234789


Q ss_pred             EEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          115 LVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       115 iVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      ++|..||......   .+   -...+..|+..    .+.+.+.+++..  +.||++|......            +.|..
T Consensus        78 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~------------~~~~~  143 (245)
T 3e9n_A           78 TLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNG------------PHPGN  143 (245)
T ss_dssp             EEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC----------------------C
T ss_pred             EEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCccccc------------CCCCc
Confidence            9999998653221   11   22334556554    455555555433  6677766543221            12222


Q ss_pred             CEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          185 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       185 kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      -.++.+......+-+.++..++  +..|++.++
T Consensus       144 ~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  174 (245)
T 3e9n_A          144 TIYAASKHALRGLADAFRKEEA--NNGIRVSTV  174 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            2334433333445566666653  334544333

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.76  E-value=0.042  Score=50.89  Aligned_cols=97  Identities=20%  Similarity=0.191  Sum_probs=63.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .+.++|+|||+ |.+|..++..+...|.  +|+.+|++.....  .+...  ....  .. ..++++.++++|+|+++..
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~--g~~~--~~-~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLLA--RIAEM--GMEP--FH-ISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHT--TSEE--EE-GGGHHHHTTTCSEEEECCS
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHC--CCee--cC-hhhHHHHhcCCCEEEECCC
Confidence            45679999999 9999999999987776  8999998652111  12221  1221  11 2457788999999999863


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCc
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNS  166 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv~~  166 (356)
                      .    ++-       |.       +.+....|.+++++++ +|.++
T Consensus       223 ~----~~i-------~~-------~~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          223 A----LVV-------TA-------NVLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             S----CCB-------CH-------HHHHHSCTTCEEEECSSTTCSB
T ss_pred             h----HHh-------CH-------HHHHhcCCCCEEEEecCCCCCC
Confidence            2    221       00       1223334789999997 78765

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=95.75  E-value=0.33  Score=43.88  Aligned_cols=151  Identities=17%  Similarity=0.161  Sum_probs=84.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhhCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL----------ENALTGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~~a  113 (356)
                      +.|.|+||++-+|..++..|+..|.  .|++.|+++.  ...++....  ..+..+.. -+|.          .+.+..-
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~--~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEK--RSADFAKER--PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHHHTTC--TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc--CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            3688999999999999999999998  9999999761  112232221  11111111 1221          2335678


Q ss_pred             cEEEEcCCCCCCCC---Cc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          114 DLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       114 DiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      |++|..||......   .+   ....+..|+...    +...+.+.+  .++.||+++.-....            +.|.
T Consensus        77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~--~~G~IInisS~~~~~------------~~~~  142 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIK--NKGRIINIASTRAFQ------------SEPD  142 (247)
T ss_dssp             CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH--TTCEEEEECCGGGTS------------CCTT
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh--cCCcEEEEeeccccc------------CCCC
Confidence            99999998653221   22   233455665544    444445544  257778876433211            1222


Q ss_pred             CCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       184 ~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .-.++.+.-.-..|-+.+|..++  | .|++-.+-
T Consensus       143 ~~~Y~asKaal~~ltk~lA~ela--~-~IrVN~I~  174 (247)
T 3ged_A          143 SEAYASAKGGIVALTHALAMSLG--P-DVLVNCIA  174 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT--T-TSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHC--C-CCEEEEEe
Confidence            21223332223346678888886  4 57655443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.72  E-value=0.022  Score=53.81  Aligned_cols=71  Identities=11%  Similarity=0.073  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...+|+|||+ |.+|...+..|.....+.++.++|++.  ++..+.++....  ..+. .   +++++++ ++|+|+++.
T Consensus       124 ~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~--~~~~-~---~~~~e~v-~aDvVi~aT  195 (322)
T 1omo_A          124 NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISAS-V---QPAEEAS-RCDVLVTTT  195 (322)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEE-E---CCHHHHT-SSSEEEECC
T ss_pred             CCCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC--ceEE-E---CCHHHHh-CCCEEEEee
Confidence            3469999999 999999988887643456999999976  344444443211  1233 2   4678889 999999975


Q ss_pred             C
Q 018433          121 G  121 (356)
Q Consensus       121 g  121 (356)
                      .
T Consensus       196 p  196 (322)
T 1omo_A          196 P  196 (322)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.65  E-value=0.077  Score=49.92  Aligned_cols=128  Identities=16%  Similarity=0.148  Sum_probs=73.8

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh--CCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~-~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al--~~aDiVIi~a  120 (356)
                      ++||.|||. |..|.+ +|..|...|.  +|...|.+........|.+..  ..+.  .+ .+. +.+  .++|+||.+.
T Consensus         4 ~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g--i~v~--~g-~~~-~~l~~~~~d~vV~Sp   74 (326)
T 3eag_A            4 MKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG--IDVY--EG-FDA-AQLDEFKADVYVIGN   74 (326)
T ss_dssp             CCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT--CEEE--ES-CCG-GGGGSCCCSEEEECT
T ss_pred             CcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC--CEEE--CC-CCH-HHcCCCCCCEEEECC
Confidence            569999999 889985 8888989998  999999875222222344332  2333  23 233 445  4899999998


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEecCCCC--ccHHHHHHHHHHhCCCCC
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVN--STVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~viv~tNPv~--~~t~~~~~~~~~~~~~~~  183 (356)
                      |+|...- .......++++++.++ +.+.+ ...+..+|-+|=...  +.+.+++.+++. .|.++
T Consensus        75 gi~~~~p-~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~-~g~~~  137 (326)
T 3eag_A           75 VAKRGMD-VVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEY-AGLAP  137 (326)
T ss_dssp             TCCTTCH-HHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHH-TTCCC
T ss_pred             CcCCCCH-HHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHH-cCCCc
Confidence            8874221 1112223445554443 22222 223445666654443  555666565544 45544

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.65  E-value=0.024  Score=53.73  Aligned_cols=66  Identities=24%  Similarity=0.349  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|++.......++   .    +..    .++.+++++||+|+++..
T Consensus       148 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~~~l~~aDvVil~vp  213 (334)
T 2dbq_A          148 VYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL---N----AEF----KPLEDLLRESDFVVLAVP  213 (334)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH---C----CEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc---C----ccc----CCHHHHHhhCCEEEECCC
Confidence            34579999999 9999999999988776  99999987633222111   1    121    357788999999999864

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.64  E-value=0.12  Score=47.15  Aligned_cols=156  Identities=11%  Similarity=0.111  Sum_probs=89.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---h-------hhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---L-------ENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~al~  111 (356)
                      +.+.|+||++-+|..++..|+..|.  .|++.|+++  +...+.++....  .+...+.. -+|   .       .+.+-
T Consensus        10 KvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            4677889999999999999999998  999999986  333444454432  12222110 012   1       12235


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      .-|++|..||......   .+   ....+..|+.    ..+..++.+.+....+.||+++.-....            +.
T Consensus        86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~------------~~  153 (255)
T 4g81_D           86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA------------AR  153 (255)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------BC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC------------CC
Confidence            7899999998753221   12   2334455554    4456666666655678888886543321            12


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      |..-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       154 ~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V~  188 (255)
T 4g81_D          154 PTVAPYTAAKGGIKMLTCSMAAEWA--QFNIQTNAIG  188 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            2111222222223346677787774  5556544443

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.63  E-value=0.028  Score=54.70  Aligned_cols=75  Identities=23%  Similarity=0.181  Sum_probs=49.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCC-cEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-C---CCChhhhhCC--CcE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLV-SVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-G---QPQLENALTG--MDL  115 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~-~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~---t~d~~~al~~--aDi  115 (356)
                      +||+|+|| |.+|+.++..|+..+.. .+|++.|++.  +...+.++.... ...+.... .   ..++.+++++  +|+
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            59999999 99999999999987743 6999999986  333344443311 01122111 1   1345566666  899


Q ss_pred             EEEcCC
Q 018433          116 VIIPAG  121 (356)
Q Consensus       116 VIi~ag  121 (356)
                      ||.+++
T Consensus        80 Vin~ag   85 (405)
T 4ina_A           80 VLNIAL   85 (405)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999986

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=95.62  E-value=0.042  Score=51.62  Aligned_cols=116  Identities=13%  Similarity=0.090  Sum_probs=64.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHH---HHHhc-CCCCCeEEEEeC-CCC---hhhhhC---
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT---ADISH-MDTGAVVRGFLG-QPQ---LENALT---  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~---~dl~~-~~~~~~v~~~~~-t~d---~~~al~---  111 (356)
                      ++|.|+||+|.+|.+++..|+..|.  ++++++.+.  .....   ..+.. ......+..+.. -+|   ..++++   
T Consensus         3 k~vlVTGas~GIG~ala~~L~~~G~--~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            3 TVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            4789999999999999999999886  566666543  22111   11110 000122332211 122   233344   


Q ss_pred             --CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 018433          112 --GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNP  163 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNP  163 (356)
                        ..|++|..||......   .+   ....+..|+.....+.+.    +++. ..+.||++|.-
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-~~g~IV~isS~  143 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVTGSV  143 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEEG
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCc
Confidence              3899999998643211   11   234456666655555555    4433 35677777543

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.62  E-value=0.0095  Score=56.07  Aligned_cols=60  Identities=22%  Similarity=0.235  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|++.....            +.    ..++++.+++||+|++..
T Consensus       142 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------------~~----~~~l~ell~~aDvV~l~~  201 (311)
T 2cuk_A          142 LQGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------------YP----FLSLEELLKEADVVSLHT  201 (311)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------------SC----BCCHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------------cc----cCCHHHHHhhCCEEEEeC
Confidence            34579999999 9999999999987776  8999998752111            11    135678899999999975

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.59  E-value=0.017  Score=54.19  Aligned_cols=65  Identities=25%  Similarity=0.330  Sum_probs=48.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|.+.....+.+   ..    +..    .++++.+++||+|++..
T Consensus       140 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~---~g----~~~----~~l~ell~~aDvV~l~~  204 (307)
T 1wwk_A          140 LEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKE---VN----GKF----VDLETLLKESDVVTIHV  204 (307)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHH---TT----CEE----CCHHHHHHHCSEEEECC
T ss_pred             cCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhh---cC----ccc----cCHHHHHhhCCEEEEec
Confidence            34579999999 9999999999987776  9999998763322211   11    121    25678899999999975

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.56  E-value=0.025  Score=50.64  Aligned_cols=56  Identities=25%  Similarity=0.363  Sum_probs=42.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh-CCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi~a  120 (356)
                      |||+|||+ |.+|..++..|...+.  ++ .++|.++ ..     ..        .   .+|+++.+ .++|+|+++.
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~-~~-----~~--------~---~~~~~~l~~~~~DvVv~~~   58 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRG-EH-----EK--------M---VRGIDEFLQREMDVAVEAA   58 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSC-CC-----TT--------E---ESSHHHHTTSCCSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCc-ch-----hh--------h---cCCHHHHhcCCCCEEEECC
Confidence            69999999 9999999988886666  76 6889864 11     00        1   24677777 6999999985

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.54  E-value=0.021  Score=53.01  Aligned_cols=67  Identities=12%  Similarity=0.210  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCCCchHHH-HHHHHHhCCCCcEEE-EEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEE
Q 018433           42 AAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~-~a~~l~~~~~~~el~-L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      ++++||+|||+ |.+|.. ++..|...+-. +++ ++|.+..  +..+..+.     ...     .+|+++.++++|+|+
T Consensus         4 M~~~~igiIG~-G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~~-----~~~-----~~~~~~ll~~~D~V~   71 (308)
T 3uuw_A            4 MKNIKMGMIGL-GSIAQKAYLPILTKSERF-EFVGAFTPNKVKREKICSDYR-----IMP-----FDSIESLAKKCDCIF   71 (308)
T ss_dssp             -CCCEEEEECC-SHHHHHHTHHHHTSCSSS-EEEEEECSCHHHHHHHHHHHT-----CCB-----CSCHHHHHTTCSEEE
T ss_pred             cccCcEEEEec-CHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcC-----CCC-----cCCHHHHHhcCCEEE
Confidence            45689999999 999986 77777654333 665 8998762  22222221     111     257888889999999


Q ss_pred             EcC
Q 018433          118 IPA  120 (356)
Q Consensus       118 i~a  120 (356)
                      ++.
T Consensus        72 i~t   74 (308)
T 3uuw_A           72 LHS   74 (308)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            974

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.53  E-value=0.027  Score=53.41  Aligned_cols=66  Identities=26%  Similarity=0.327  Sum_probs=48.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|++.....+.++       .+..    .++++.+++||+|+++..
T Consensus       144 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~e~l~~aDiVil~vp  209 (333)
T 2d0i_A          144 LYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKEL-------KARY----MDIDELLEKSDIVILALP  209 (333)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHH-------TEEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc-------Ccee----cCHHHHHhhCCEEEEcCC
Confidence            34579999999 9999999999987776  99999987633222111       1221    257788999999999863

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=95.51  E-value=0.052  Score=52.43  Aligned_cols=72  Identities=15%  Similarity=0.309  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCchhHH-HHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~-~l~~~~~-~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .++||+|+||+|.+|.-+.. .|...+. ..+++++.... .|.. .++...  ...+..   .++. +++.++|+||++
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~v~~---~~~~-~~~~~vDvvf~a   75 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETTLKD---ATSI-DDLKKCDVIITC   75 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCBCEE---TTCH-HHHHTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceEEEe---CCCh-hHhcCCCEEEEC
Confidence            45799999999999999998 6666663 45888886543 2211 122111  112221   2243 568899999998


Q ss_pred             CC
Q 018433          120 AG  121 (356)
Q Consensus       120 ag  121 (356)
                      .|
T Consensus        76 ~~   77 (377)
T 3uw3_A           76 QG   77 (377)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.48  E-value=0.0029  Score=61.38  Aligned_cols=123  Identities=16%  Similarity=0.265  Sum_probs=74.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-hhHHHHHhcCC--CCCeEEEEeCCCChhhhhCCCcEE
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~-~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      ..++.||+|+|| |.+|.+++..+...|. .+|+++|.+- . .+...+|.+..  +...........++.+++++||++
T Consensus       185 ~l~d~kVVi~GA-GaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~  262 (398)
T 2a9f_A          185 SLDEVSIVVNGG-GSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIF  262 (398)
T ss_dssp             CTTSCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSE
T ss_pred             CCCccEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEE
Confidence            456789999999 9999999998887664 6999999874 1 11100122211  000000001134688999999998


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      |=+.+ |   |.-.           +++.+.|   +++++|+-.|||.--.++   +..++. |   ..++++.
T Consensus       263 IG~Sa-p---gl~T-----------~EmVk~M---a~~pIIfalsNPt~E~~p---e~a~~~-g---~~i~atG  311 (398)
T 2a9f_A          263 IGVSA-P---GVLK-----------AEWISKM---AARPVIFAMANPIPEIYP---DEALEA-G---AYIVGTG  311 (398)
T ss_dssp             EECCS-T---TCCC-----------HHHHHTS---CSSCEEEECCSSSCSSCH---HHHHTT-T---CSEEEES
T ss_pred             EecCC-C---CCCC-----------HHHHHhh---CCCCEEEECCCCCccCCH---HHHHHh-C---CeEEEeC
Confidence            76643 3   4311           2333333   389999999999866654   223332 2   3577764

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.47  E-value=0.022  Score=54.22  Aligned_cols=65  Identities=26%  Similarity=0.353  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|+|||. |.+|..+|..+..-|.  +|+.+|.+.....+.   ...  .  ..    .++++.+++||+|++..
T Consensus       163 l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~---~~g--~--~~----~~l~ell~~aDvV~l~~  227 (335)
T 2g76_A          163 LNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSA---SFG--V--QQ----LPLEEIWPLCDFITVHT  227 (335)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHH---HTT--C--EE----CCHHHHGGGCSEEEECC
T ss_pred             CCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhh---hcC--c--ee----CCHHHHHhcCCEEEEec
Confidence            44579999999 9999999999986665  999999875332221   111  1  11    25678899999999975

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.47  E-value=0.34  Score=43.59  Aligned_cols=158  Identities=12%  Similarity=0.132  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh----------hh
Q 018433           44 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------EN  108 (356)
Q Consensus        44 ~~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~  108 (356)
                      .+.+.|+||+|  -+|..+|..|+..|.  .|++.|+++  ++.....+.+.. ...+..+. .-+|.          .+
T Consensus         6 gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            6 NKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             TCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            34688999865  599999999999998  999999987  233333333322 12222211 11222          12


Q ss_pred             hhCCCcEEEEcCCCCCCC-------CCcHHHH---HHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHH
Q 018433          109 ALTGMDLVIIPAGVPRKP-------GMTRDDL---FNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~-------g~~r~~~---~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~  177 (356)
                      .+-..|++|..+|.....       ..+..++   +..|.......+.......+ .+.||++|.-....          
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~----------  152 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF----------  152 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS----------
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc----------
Confidence            345799999998864211       1223222   34455555555555555543 57888876433211          


Q ss_pred             hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          178 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       178 ~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                        +.|..-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       153 --~~~~~~~Y~asKaal~~ltr~lA~Ela--~~gIrVN~V~  189 (256)
T 4fs3_A          153 --AVQNYNVMGVAKASLEANVKYLALDLG--PDNIRVNAIS  189 (256)
T ss_dssp             --CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             --CcccchhhHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence              122222223322223345677777774  5566555443

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=95.46  E-value=0.037  Score=49.83  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHL   39 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35799999999999999999999987  899999875

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=95.44  E-value=0.064  Score=48.29  Aligned_cols=148  Identities=11%  Similarity=0.120  Sum_probs=80.1

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHHHHhcCCCCCeEEEEeC-CCC---hhhhh----
Q 018433           44 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQ---LENAL----  110 (356)
Q Consensus        44 ~~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al----  110 (356)
                      .+++.|+||+  |.+|.+++..|+..|.  .++++|.+..   .....++.... ...+..+.. -+|   .++++    
T Consensus        20 ~k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (267)
T 3gdg_A           20 GKVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDVV   96 (267)
T ss_dssp             TCEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHHH
Confidence            3489999998  7999999999999987  8999988761   33333443211 112221110 112   22222    


Q ss_pred             ---CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHH----HHHhCCCcEEEEecCCCCccHHHHHHHHHH
Q 018433          111 ---TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       111 ---~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~viv~tNPv~~~t~~~~~~~~~  177 (356)
                         ...|++|..||......   .+   ....+..|+.....+.+.    +.+.. .+.||+++......          
T Consensus        97 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~----------  165 (267)
T 3gdg_A           97 ADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITASMSGHI----------  165 (267)
T ss_dssp             HHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS----------
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEccccccc----------
Confidence               36799999998653221   12   233455666544444444    44443 45666665533221          


Q ss_pred             hCCCC-CCCEEEechhhHHHHHHHHHHHhC
Q 018433          178 AGTYD-PKKLLGVTMLDVVRANTFVAEVLG  206 (356)
Q Consensus       178 ~~~~~-~~kviG~t~ld~~R~~~~la~~l~  206 (356)
                       ..++ ..-.++.+......+-+.++..++
T Consensus       166 -~~~~~~~~~Y~~sK~a~~~~~~~la~e~~  194 (267)
T 3gdg_A          166 -ANFPQEQTSYNVAKAGCIHMARSLANEWR  194 (267)
T ss_dssp             -CCSSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -cCCCCCCCcchHHHHHHHHHHHHHHHHhc
Confidence             1111 112233333333456677777774

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.40  E-value=0.022  Score=54.65  Aligned_cols=76  Identities=24%  Similarity=0.276  Sum_probs=51.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEE
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVII  118 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi  118 (356)
                      +.++++|+|+|+ |.+|..++..+...|.  +|+++|++... ..+.+.  ..  ..+.. .....++.+.++++|+||.
T Consensus       163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~--~g--~~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          163 GVAPASVVILGG-GTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDV--FG--GRVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             BBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--TT--TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHh--cC--ceEEEecCCHHHHHHHHhCCCEEEE
Confidence            355689999999 9999999999988887  89999987521 111111  11  12211 1112456677899999999


Q ss_pred             cCCCC
Q 018433          119 PAGVP  123 (356)
Q Consensus       119 ~ag~~  123 (356)
                      +++.+
T Consensus       236 ~~g~~  240 (369)
T 2eez_A          236 AVLVP  240 (369)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            98765

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.38  E-value=0.013  Score=56.22  Aligned_cols=74  Identities=15%  Similarity=0.244  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCC----CeEEEEeCCCChhhhhCCCcEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG----AVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~----~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      ++++||+|+||.|.+|..++..|...+.+ |++.+......+...+-.+..+.    .++..    .+ ++.++++|+||
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~----~~-~~~~~~vDvVf   87 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLVS----VK-DADFSTVDAVF   87 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC----GG-GCCGGGCSEEE
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCccccccee----cc-hhHhcCCCEEE
Confidence            44579999998899999999998876543 66666443322222222221111    11111    12 34567999999


Q ss_pred             EcCC
Q 018433          118 IPAG  121 (356)
Q Consensus       118 i~ag  121 (356)
                      ++.+
T Consensus        88 ~atp   91 (359)
T 1xyg_A           88 CCLP   91 (359)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9864

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=95.38  E-value=0.035  Score=52.91  Aligned_cols=77  Identities=17%  Similarity=0.223  Sum_probs=45.8

Q ss_pred             hhhhccCCCCCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEE-EEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCChhhh
Q 018433           34 AKCRAKGGAAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLH-LYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENA  109 (356)
Q Consensus        34 ~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~-~~~~~~el~-L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~a  109 (356)
                      ++-++...++++||+|||+ |.+|...+..|. ..+-+ +|+ ++|.+..  ...+..+.     .....+   +|+++.
T Consensus        13 ~~~~~~~~m~~~rvgiIG~-G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~a~~~g-----~~~~~~---~~~~~l   82 (357)
T 3ec7_A           13 GRENLYFQGMTLKAGIVGI-GMIGSDHLRRLANTVSGV-EVVAVCDIVAGRAQAALDKYA-----IEAKDY---NDYHDL   82 (357)
T ss_dssp             ---------CCEEEEEECC-SHHHHHHHHHHHHTCTTE-EEEEEECSSTTHHHHHHHHHT-----CCCEEE---SSHHHH
T ss_pred             CccccccCCCeeeEEEECC-cHHHHHHHHHHHhhCCCc-EEEEEEeCCHHHHHHHHHHhC-----CCCeee---CCHHHH
Confidence            3444455556789999999 999999998888 43333 555 8998873  22222221     112332   577777


Q ss_pred             hC--CCcEEEEcC
Q 018433          110 LT--GMDLVIIPA  120 (356)
Q Consensus       110 l~--~aDiVIi~a  120 (356)
                      ++  +.|+|+++.
T Consensus        83 l~~~~~D~V~i~t   95 (357)
T 3ec7_A           83 INDKDVEVVIITA   95 (357)
T ss_dssp             HHCTTCCEEEECS
T ss_pred             hcCCCCCEEEEcC
Confidence            76  589999974

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=95.37  E-value=0.097  Score=52.52  Aligned_cols=119  Identities=18%  Similarity=0.109  Sum_probs=72.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-----hhHHHHHhcCCCCCeEEEEeC-CCC---hhhhhC
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLG-QPQ---LENALT  111 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-----~g~~~dl~~~~~~~~v~~~~~-t~d---~~~al~  111 (356)
                      +.+..+|.|+||+|.+|..++..|+..|. ..|+|++++..     .....++...  ...+..+.. -+|   +.++++
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~  332 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGA-ERLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERDALAALVT  332 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTC-SEEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCC-cEEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHh
Confidence            44567899999999999999999988775 26899988651     2223344432  234444321 133   233444


Q ss_pred             C--CcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          112 G--MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       112 ~--aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      +  .|+||.++|......   .+   -...+..|+.....+.+.+....+...|+++|.
T Consensus       333 ~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS  391 (511)
T 2z5l_A          333 AYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS  391 (511)
T ss_dssp             HSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred             cCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence            3  899999999753221   12   223456677777777766554313344555543

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=95.35  E-value=0.016  Score=54.31  Aligned_cols=61  Identities=23%  Similarity=0.236  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|++.. .      . ..    .   ...++++.++.||+|++..
T Consensus       122 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~-~------~-~~----~---~~~~l~ell~~aDvV~l~~  182 (303)
T 1qp8_A          122 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK-E------G-PW----R---FTNSLEEALREARAAVCAL  182 (303)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC-C------S-SS----C---CBSCSHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc-c------c-Cc----c---cCCCHHHHHhhCCEEEEeC
Confidence            45679999999 9999999999987776  8999998652 1      0 10    0   1235678899999999985

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.34  E-value=0.063  Score=49.81  Aligned_cols=98  Identities=20%  Similarity=0.255  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..+.++|+|||+ |.+|..++..+...|.  +|+.+|++....  ..+...  ....  .. ..++++.+++||+|+.+.
T Consensus       154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~d~~~~~~--~~~~~~--g~~~--~~-~~~l~~~l~~aDvVi~~~  223 (300)
T 2rir_A          154 TIHGSQVAVLGL-GRTGMTIARTFAALGA--NVKVGARSSAHL--ARITEM--GLVP--FH-TDELKEHVKDIDICINTI  223 (300)
T ss_dssp             CSTTSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHH--HHHHHT--TCEE--EE-GGGHHHHSTTCSEEEECC
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHC--CCeE--Ec-hhhHHHHhhCCCEEEECC
Confidence            456789999999 9999999999987776  999999865211  112221  1121  11 246778899999999986


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCc
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNS  166 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv~~  166 (356)
                      ..    ++-       |.       ..+....|.+++++++ .|.+.
T Consensus       224 p~----~~i-------~~-------~~~~~mk~g~~lin~a~g~~~~  252 (300)
T 2rir_A          224 PS----MIL-------NQ-------TVLSSMTPKTLILDLASRPGGT  252 (300)
T ss_dssp             SS----CCB-------CH-------HHHTTSCTTCEEEECSSTTCSB
T ss_pred             Ch----hhh-------CH-------HHHHhCCCCCEEEEEeCCCCCc
Confidence            43    211       10       1223334788999986 67665

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=95.31  E-value=0.12  Score=48.45  Aligned_cols=115  Identities=18%  Similarity=0.159  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhHHHHHhcC--CCCCeEEEEeC-CCC---hhhhhC----
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTADISHM--DTGAVVRGFLG-QPQ---LENALT----  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~~~dl~~~--~~~~~v~~~~~-t~d---~~~al~----  111 (356)
                      +.|.|+||+|.+|.+++..|+..|.  +|++.+++.  . .....++.+.  .....+..+.. -+|   .+++++    
T Consensus         6 k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            6 KIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            4789999999999999999999987  888877653  1 1111111110  00122222211 122   233343    


Q ss_pred             ---CCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHH----HHhCCCcEEEEecC
Q 018433          112 ---GMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  162 (356)
Q Consensus       112 ---~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i----~~~~p~a~viv~tN  162 (356)
                         ..|++|..||.... +  ..+   ....+..|+.....+.+.+    ++. ..+.||++|.
T Consensus        84 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS  146 (324)
T 3u9l_A           84 EDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISS  146 (324)
T ss_dssp             HHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEec
Confidence               89999999986421 1  111   2344566766665555554    443 3566777664

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=95.28  E-value=0.063  Score=51.69  Aligned_cols=70  Identities=17%  Similarity=0.258  Sum_probs=44.9

Q ss_pred             CeEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCchhHH-HHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~-~l~~~~~-~~el~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |||+|+||+|.+|.-+.. .|...+. ..+++++.... .|.. .++..    ..+.... .++. +.++++|+||++.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~----~~~~~~~-~~~~-~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGK----DAGMLHD-AFDI-ESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSS----CCCBCEE-TTCH-HHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCC----CceEEEe-cCCh-hHhccCCEEEECCC
Confidence            699999999999999998 6766663 45888886644 2221 11211    1122111 2243 56899999999865

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=95.27  E-value=0.076  Score=52.92  Aligned_cols=67  Identities=15%  Similarity=0.132  Sum_probs=43.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC------CCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN------PLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~------~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      +||+|||. |.+|.++|..|...      |+  ++++.+...  ....+.+.  ......-.    ..+..+++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~--G~~v~d~t----a~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAA--GFTEESGT----LGDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHT--TCCTTTTC----EEEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHC--CCEEecCC----CCCHHHHHhcCCEE
Confidence            59999999 99999999999887      76  666555443  22233222  11000000    12457899999999


Q ss_pred             EEcC
Q 018433          117 IIPA  120 (356)
Q Consensus       117 Ii~a  120 (356)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9985

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.19  E-value=0.071  Score=52.66  Aligned_cols=72  Identities=15%  Similarity=0.078  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe-CCC---ChhhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~t~---d~~~al~~aDiVIi~  119 (356)
                      .++|.|+|+ |.+|++++..|+..+.  +|+++|++.  ..+.++.+..  ..+.... ..+   ++.++++++|+||.+
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~--~~a~~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTL--ESAKKLSAGV--QHSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSH--HHHHHTTTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCH--HHHHHHHHhc--CCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            468999997 9999999999998775  899999864  2222232211  1122111 112   344678899999999


Q ss_pred             CCC
Q 018433          120 AGV  122 (356)
Q Consensus       120 ag~  122 (356)
                      ++.
T Consensus        76 a~~   78 (450)
T 1ff9_A           76 IPY   78 (450)
T ss_dssp             CC-
T ss_pred             Ccc
Confidence            864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.16  E-value=0.012  Score=58.44  Aligned_cols=35  Identities=29%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ..|||.|+|+ |.+|+++|..|...++  +++++|.++
T Consensus         2 ~~M~iiI~G~-G~vG~~la~~L~~~~~--~v~vId~d~   36 (461)
T 4g65_A            2 NAMKIIILGA-GQVGGTLAENLVGENN--DITIVDKDG   36 (461)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHTCSTTE--EEEEEESCH
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCH
Confidence            5799999999 9999999999988887  999999986

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.16  E-value=0.084  Score=48.73  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .++|.|||+ |.+|...+..|+..|.  +|+++|.+.
T Consensus        13 ~k~VLVVGg-G~va~rka~~Ll~~Ga--~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEEE
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCC--EEEEEcCCC
Confidence            469999999 9999999999998887  899999754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.15  E-value=0.049  Score=49.46  Aligned_cols=67  Identities=22%  Similarity=0.334  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      +. ||+|||+ |.+|..++..|...+.  +|.++|++...  +.++.+.. ...   .   ++++++ +++|+||++...
T Consensus       116 ~~-~v~iiG~-G~~g~~~a~~l~~~g~--~v~v~~r~~~~--~~~l~~~~-~~~---~---~~~~~~-~~~Divi~~tp~  181 (263)
T 2d5c_A          116 KG-PALVLGA-GGAGRAVAFALREAGL--EVWVWNRTPQR--ALALAEEF-GLR---A---VPLEKA-REARLLVNATRV  181 (263)
T ss_dssp             CS-CEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHH-TCE---E---CCGGGG-GGCSEEEECSST
T ss_pred             CC-eEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHHh-ccc---h---hhHhhc-cCCCEEEEccCC
Confidence            45 9999999 9999999999998886  89999987521  12222111 111   2   355677 999999998654


Q ss_pred             C
Q 018433          123 P  123 (356)
Q Consensus       123 ~  123 (356)
                      +
T Consensus       182 ~  182 (263)
T 2d5c_A          182 G  182 (263)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=95.15  E-value=0.031  Score=52.52  Aligned_cols=69  Identities=9%  Similarity=0.082  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~  119 (356)
                      +++||+|||+ |.+|...+..|...+-. +|+ ++|.+...+.  .+.+....+  +   ..+|+++.+.  ++|+|+++
T Consensus         4 ~~~~igiiG~-G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~--~~~~~~~~~--~---~~~~~~~ll~~~~~D~V~i~   74 (330)
T 3e9m_A            4 DKIRYGIMST-AQIVPRFVAGLRESAQA-EVRGIASRRLENAQ--KMAKELAIP--V---AYGSYEELCKDETIDIIYIP   74 (330)
T ss_dssp             CCEEEEECSC-CTTHHHHHHHHHHSSSE-EEEEEBCSSSHHHH--HHHHHTTCC--C---CBSSHHHHHHCTTCSEEEEC
T ss_pred             CeEEEEEECc-hHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHH--HHHHHcCCC--c---eeCCHHHHhcCCCCCEEEEc
Confidence            4579999999 99999999888775433 555 7898762221  111111001  1   1357778776  89999997


Q ss_pred             C
Q 018433          120 A  120 (356)
Q Consensus       120 a  120 (356)
                      .
T Consensus        75 t   75 (330)
T 3e9m_A           75 T   75 (330)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.14  E-value=0.096  Score=49.28  Aligned_cols=77  Identities=16%  Similarity=0.251  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC---C--chhHHHHHhcCCCCCeEEEEeCC--CChhhhhCCCc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV---N--TPGVTADISHMDTGAVVRGFLGQ--PQLENALTGMD  114 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~---~--~~g~~~dl~~~~~~~~v~~~~~t--~d~~~al~~aD  114 (356)
                      .+..++.|+|| |-+|.+++..|+..|. .+|++++++   .  ++..+.++.... ...+......  .++.+++.++|
T Consensus       152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga-~~V~i~nR~~~~~~~a~~la~~~~~~~-~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          152 IIGKKMTICGA-GGAATAICIQAALDGV-KEISIFNRKDDFYANAEKTVEKINSKT-DCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHHTCS
T ss_pred             ccCCEEEEECC-ChHHHHHHHHHHHCCC-CEEEEEECCCchHHHHHHHHHHhhhhc-CCceEEeccchHHHHHhhhcCCC
Confidence            34569999999 9999999999998774 489999998   3  233333443321 2334433211  12456778999


Q ss_pred             EEEEcCC
Q 018433          115 LVIIPAG  121 (356)
Q Consensus       115 iVIi~ag  121 (356)
                      +||.+..
T Consensus       229 iIINaTp  235 (315)
T 3tnl_A          229 IFTNATG  235 (315)
T ss_dssp             EEEECSS
T ss_pred             EEEECcc
Confidence            9999754

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.12  E-value=0.033  Score=53.64  Aligned_cols=98  Identities=20%  Similarity=0.322  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|||. |.+|..+|..+..-|.  +|+.+|.......+.+   ..    +..    .++++.++.||+|++..- 
T Consensus       175 ~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~---~g----~~~----~~l~ell~~aDvV~l~~P-  239 (365)
T 4hy3_A          175 AGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEE---NG----VEP----ASLEDVLTKSDFIFVVAA-  239 (365)
T ss_dssp             SSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHH---TT----CEE----CCHHHHHHSCSEEEECSC-
T ss_pred             CCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhh---cC----eee----CCHHHHHhcCCEEEEcCc-
Confidence            3579999999 9999999998875565  9999998642222211   11    111    357889999999999752 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  167 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~  167 (356)
                       ..+. ++. ++  |       .+.+....|++++|+++  .++|.-
T Consensus       240 -lt~~-T~~-li--~-------~~~l~~mk~gailIN~aRG~~vde~  274 (365)
T 4hy3_A          240 -VTSE-NKR-FL--G-------AEAFSSMRRGAAFILLSRADVVDFD  274 (365)
T ss_dssp             -SSCC-----CC--C-------HHHHHTSCTTCEEEECSCGGGSCHH
T ss_pred             -CCHH-HHh-hc--C-------HHHHhcCCCCcEEEECcCCchhCHH
Confidence             2111 110 01  1       12233445899999996  666644

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.07  E-value=0.039  Score=53.20  Aligned_cols=78  Identities=23%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      +.++.+|+|+|+ |.+|..++..+...|.  +|+.+|++... ..+.+.  ......+. .....++.+.++++|+||.+
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga--~V~~~d~~~~~l~~~~~~--~g~~~~~~-~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGA--TVTVLDINIDKLRQLDAE--FCGRIHTR-YSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--TTTSSEEE-ECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHh--cCCeeEec-cCCHHHHHHHHcCCCEEEEC
Confidence            456789999999 9999999999988786  89999987521 122221  11111111 11123566778999999999


Q ss_pred             CCCCC
Q 018433          120 AGVPR  124 (356)
Q Consensus       120 ag~~~  124 (356)
                      .+.|.
T Consensus       239 ~~~p~  243 (377)
T 2vhw_A          239 VLVPG  243 (377)
T ss_dssp             CCCTT
T ss_pred             CCcCC
Confidence            88764

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.07  E-value=0.035  Score=52.53  Aligned_cols=97  Identities=20%  Similarity=0.251  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|||. |.+|..+|..+..-|.  +|+.+|.+....     ..   ....  . ...++++.+++||+|++..-.
T Consensus       136 ~gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----~~---~~~~--~-~~~~l~ell~~aDvV~l~lPl  201 (324)
T 3evt_A          136 TGQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPA-----DH---FHET--V-AFTATADALATANFIVNALPL  201 (324)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCC-----TT---CSEE--E-EGGGCHHHHHHCSEEEECCCC
T ss_pred             cCCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchh-----Hh---Hhhc--c-ccCCHHHHHhhCCEEEEcCCC
Confidence            3579999999 9999999999987777  999999865110     00   0111  1 124677889999999997521


Q ss_pred             -CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 018433          123 -PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  167 (356)
Q Consensus       123 -~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~  167 (356)
                       +...+.     +  |       .+.+....|.+++|+++  .++|.-
T Consensus       202 t~~t~~l-----i--~-------~~~l~~mk~gailIN~aRG~~vd~~  235 (324)
T 3evt_A          202 TPTTHHL-----F--S-------TELFQQTKQQPMLINIGRGPAVDTT  235 (324)
T ss_dssp             CGGGTTC-----B--S-------HHHHHTCCSCCEEEECSCGGGBCHH
T ss_pred             chHHHHh-----c--C-------HHHHhcCCCCCEEEEcCCChhhhHH
Confidence             111111     1  1       11233344789999986  455543

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=95.03  E-value=0.07  Score=52.70  Aligned_cols=117  Identities=21%  Similarity=0.261  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhh-------CC-Cc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL-------TG-MD  114 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al-------~~-aD  114 (356)
                      ...+.|+||+|.+|..++..|+..|.  +|+++|++.......++........+.. .+...+.++.+       -+ .|
T Consensus       213 gk~~LVTGgsgGIG~aiA~~La~~Ga--~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          213 GKVAVVTGAARGIGATIAEVFARDGA--TVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCEEEEeCCchHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            35799999999999999999999887  8999998652111111111100000110 00112222222       23 89


Q ss_pred             EEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC---CCcEEEEecC
Q 018433          115 LVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  162 (356)
Q Consensus       115 iVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~viv~tN  162 (356)
                      +||..||......   ++   ....+..|+.....+.+.+....   +.+.||++|.
T Consensus       291 ~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS  347 (454)
T 3u0b_A          291 ILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSS  347 (454)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECC
T ss_pred             EEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeC
Confidence            9999999754221   22   23456788888888888777652   4567777764

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.00  E-value=0.039  Score=52.00  Aligned_cols=67  Identities=21%  Similarity=0.378  Sum_probs=45.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~a  120 (356)
                      ++||+|||+ |.+|...+..|...+-. +|+ ++|++...  +..+.+.. .  ...+   +|+++.++  ++|+|+++.
T Consensus         4 ~~rvgiiG~-G~~g~~~~~~l~~~~~~-~l~av~d~~~~~--~~~~a~~~-g--~~~~---~~~~~~l~~~~~D~V~i~t   73 (344)
T 3euw_A            4 TLRIALFGA-GRIGHVHAANIAANPDL-ELVVIADPFIEG--AQRLAEAN-G--AEAV---ASPDEVFARDDIDGIVIGS   73 (344)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCTTE-EEEEEECSSHHH--HHHHHHTT-T--CEEE---SSHHHHTTCSCCCEEEECS
T ss_pred             ceEEEEECC-cHHHHHHHHHHHhCCCc-EEEEEECCCHHH--HHHHHHHc-C--Ccee---CCHHHHhcCCCCCEEEEeC
Confidence            579999999 99999999888776433 555 88987522  12222211 1  2332   57888887  899999975

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=94.98  E-value=0.068  Score=49.55  Aligned_cols=57  Identities=23%  Similarity=0.374  Sum_probs=46.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .+..+++|||+++.||..++..|...+-  ++.+++..                       |.++++.++.||+||.+.|
T Consensus       158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gA--tVtv~h~~-----------------------t~~L~~~~~~ADIVI~Avg  212 (285)
T 3p2o_A          158 LEGKDAVIIGASNIVGRPMATMLLNAGA--TVSVCHIK-----------------------TKDLSLYTRQADLIIVAAG  212 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSCHHHHHTTCSEEEECSS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHhhcCCEEEECCC
Confidence            4567999999955699999999998876  67777631                       3467889999999999988


Q ss_pred             CC
Q 018433          122 VP  123 (356)
Q Consensus       122 ~~  123 (356)
                      .|
T Consensus       213 ~p  214 (285)
T 3p2o_A          213 CV  214 (285)
T ss_dssp             CT
T ss_pred             CC
Confidence            65

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=94.97  E-value=0.068  Score=49.90  Aligned_cols=79  Identities=22%  Similarity=0.342  Sum_probs=56.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .+..+++|||++..||..++..|+..+-  .+.+++..                       +.|+++.++.||+||.+.|
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gA--tVtv~hs~-----------------------t~~L~~~~~~ADIVI~Avg  217 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSK-----------------------TAHLDEEVNKGDILVVATG  217 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSSHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCC--eEEEEECC-----------------------cccHHHHhccCCEEEECCC
Confidence            4567999999933689999999988775  77777621                       4578899999999999998


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVN  165 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv~  165 (356)
                      .|.   .-..++                 ..|.++||-++ |+++
T Consensus       218 ~p~---~I~~~~-----------------vk~GavVIDVgi~~~~  242 (301)
T 1a4i_A          218 QPE---MVKGEW-----------------IKPGAIVIDCGINYVP  242 (301)
T ss_dssp             CTT---CBCGGG-----------------SCTTCEEEECCCBC--
T ss_pred             Ccc---cCCHHH-----------------cCCCcEEEEccCCCcc
Confidence            763   111121                 12788998886 6553

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=94.96  E-value=0.023  Score=53.98  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .|||+|||| |-+|.++|..|...|+  ++.++|.+.
T Consensus         1 sm~V~IVGa-GpaGl~~A~~L~~~G~--~v~v~Er~~   34 (412)
T 4hb9_A            1 SMHVGIIGA-GIGGTCLAHGLRKHGI--KVTIYERNS   34 (412)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            489999999 9999999999999998  999998754

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.96  E-value=0.047  Score=50.87  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +.++|+|+|+ |.+|..++..|+..|. .+|+++|++.  ++..+.++... . ..+  . ...++.++++++|+||.+.
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~-~~V~v~nR~~~ka~~la~~~~~~-~-~~~--~-~~~~~~~~~~~aDivIn~t  212 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTAA-ERIDMANRTVEKAERLVREGDER-R-SAY--F-SLAEAETRLAEYDIIINTT  212 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHSCSS-S-CCE--E-CHHHHHHTGGGCSEEEECS
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHhhhc-c-Cce--e-eHHHHHhhhccCCEEEECC
Confidence            4569999999 9999999999988764 4899999875  23333222211 0 111  1 1134567789999999987


Q ss_pred             CCCC
Q 018433          121 GVPR  124 (356)
Q Consensus       121 g~~~  124 (356)
                      +.+.
T Consensus       213 ~~~~  216 (297)
T 2egg_A          213 SVGM  216 (297)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            6553

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=94.96  E-value=0.05  Score=51.29  Aligned_cols=66  Identities=21%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~-~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|+|||. |.+|..+|..+...|.  +|+.+|. +.....+.++   .  .  ..   ..++++.+++||+|++..
T Consensus       144 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~---g--~--~~---~~~l~ell~~aDvVil~~  210 (320)
T 1gdh_A          144 LDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASY---Q--A--TF---HDSLDSLLSVSQFFSLNA  210 (320)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHH---T--C--EE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhc---C--c--EE---cCCHHHHHhhCCEEEEec
Confidence            34579999999 9999999999987675  9999998 7632222221   1  1  11   235778899999999975

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=94.94  E-value=0.071  Score=52.55  Aligned_cols=93  Identities=17%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ....+|+|+|. |.||..+|..+..-|.  +|+.+|+++...... ..+.     ...    .+++++++.||+|+.+.|
T Consensus       245 L~GKTVgVIG~-G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~A-~~~G-----~~v----v~LeElL~~ADIVv~atg  311 (464)
T 3n58_A          245 MAGKVAVVCGY-GDVGKGSAQSLAGAGA--RVKVTEVDPICALQA-AMDG-----FEV----VTLDDAASTADIVVTTTG  311 (464)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHH-HHTT-----CEE----CCHHHHGGGCSEEEECCS
T ss_pred             ccCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEeCCcchhhHH-HhcC-----cee----ccHHHHHhhCCEEEECCC
Confidence            34568999999 9999999999987776  899999876221111 1111     111    246789999999998754


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      .+   +.-.              .+.+...-|.++++|++...
T Consensus       312 t~---~lI~--------------~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          312 NK---DVIT--------------IDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             SS---SSBC--------------HHHHHHSCTTEEEEECSSST
T ss_pred             Cc---cccC--------------HHHHhcCCCCeEEEEcCCCC
Confidence            32   2111              12223334799999987543

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=94.93  E-value=0.012  Score=56.39  Aligned_cols=99  Identities=18%  Similarity=0.118  Sum_probs=57.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeCCCchhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~----~~el~L~D~~~~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      ++||+|+||+|.+|..+...|...+.    ..|++++-.....+...+-.+....  ..+....  .| .++++++|+||
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~--~~-~~~~~~~DvVf   85 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEP--TE-AAVLGGHDAVF   85 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEE--CC-HHHHTTCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeecc--CC-HHHhcCCCEEE
Confidence            46999999999999999999887661    2377777432211221111111100  1122111  23 35688999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      ++.|..    .            .+++++.+ +.  .+++|..|+|-
T Consensus        86 ~alg~~----~------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           86 LALPHG----H------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             ECCTTS----C------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             ECCCCc----c------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            986532    1            23555555 32  46777778775

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=94.87  E-value=0.049  Score=51.62  Aligned_cols=62  Identities=19%  Similarity=0.328  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .++|+|||. |.+|..+|..+...|.  +|+.+|...... ..++   .     . .  ..++++.+++||+|++..
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~---~-----~-~--~~~l~ell~~aDvV~l~~  207 (333)
T 1j4a_A          146 DQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK---G-----Y-Y--VDSLDDLYKQADVISLHV  207 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT---T-----C-B--CSCHHHHHHHCSEEEECS
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh---C-----e-e--cCCHHHHHhhCCEEEEcC
Confidence            469999999 9999999999987776  899999876322 1111   1     1 1  125678899999999975

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=94.85  E-value=0.066  Score=51.09  Aligned_cols=75  Identities=16%  Similarity=0.145  Sum_probs=43.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCchhHHHHHhcCCC--------CCeEEEEeCCCChhhhhCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDT--------GAVVRGFLGQPQLENALTGM  113 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~-D~~~~~g~~~dl~~~~~--------~~~v~~~~~t~d~~~al~~a  113 (356)
                      +++||+|+||+|.+|..++..|...+. .||+.+ |.+...+...+-.+...        ...+...  ..|. +++.++
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~-~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~-~~~~~v   78 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPY-LELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIV--STNY-EDHKDV   78 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSS-EEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEE--CSSG-GGGTTC
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCC-cEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEe--eCCH-HHhcCC
Confidence            357999999889999999988776543 377766 43321121122112110        0112221  1243 456899


Q ss_pred             cEEEEcCC
Q 018433          114 DLVIIPAG  121 (356)
Q Consensus       114 DiVIi~ag  121 (356)
                      |+|+++.+
T Consensus        79 DvVf~atp   86 (350)
T 2ep5_A           79 DVVLSALP   86 (350)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999854

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.85  E-value=0.044  Score=54.42  Aligned_cols=72  Identities=19%  Similarity=0.122  Sum_probs=45.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-CC----hhhhhCCCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~al~~aDiV  116 (356)
                      ++||.|||+ |.||+.++..|++.+ + ..+|++.|.+.......+...    ........+ .|    +.+.+++.|+|
T Consensus        13 ~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g----~~~~~~~Vdadnv~~~l~aLl~~~DvV   87 (480)
T 2ph5_A           13 KNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYG----VSFKLQQITPQNYLEVIGSTLEENDFL   87 (480)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHT----CEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcC----CceeEEeccchhHHHHHHHHhcCCCEE
Confidence            359999998 999999999998865 3 368999998762222222211    122221111 22    33456667999


Q ss_pred             EEcC
Q 018433          117 IIPA  120 (356)
Q Consensus       117 Ii~a  120 (356)
                      |.++
T Consensus        88 IN~s   91 (480)
T 2ph5_A           88 IDVS   91 (480)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9854

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=94.84  E-value=0.051  Score=51.48  Aligned_cols=68  Identities=21%  Similarity=0.297  Sum_probs=45.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEE-EEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi  118 (356)
                      +++||+|||+ |.+|...+..+... +-+ +|+ ++|++.....  .+.+.. .  +..+   +|+++.++  ++|+|++
T Consensus        12 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~--~~~~~~-~--~~~~---~~~~~ll~~~~~D~V~i   81 (354)
T 3q2i_A           12 RKIRFALVGC-GRIANNHFGALEKHADRA-ELIDVCDIDPAALK--AAVERT-G--ARGH---ASLTDMLAQTDADIVIL   81 (354)
T ss_dssp             SCEEEEEECC-STTHHHHHHHHHHTTTTE-EEEEEECSSHHHHH--HHHHHH-C--CEEE---SCHHHHHHHCCCSEEEE
T ss_pred             CcceEEEEcC-cHHHHHHHHHHHhCCCCe-EEEEEEcCCHHHHH--HHHHHc-C--Ccee---CCHHHHhcCCCCCEEEE
Confidence            4579999999 99999999888876 333 554 8898762211  111111 1  2332   57777776  8999999


Q ss_pred             cC
Q 018433          119 PA  120 (356)
Q Consensus       119 ~a  120 (356)
                      +.
T Consensus        82 ~t   83 (354)
T 3q2i_A           82 TT   83 (354)
T ss_dssp             CS
T ss_pred             CC
Confidence            74

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	3e-49
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	3e-48
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	7e-43
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	3e-35
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	6e-31
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	6e-31
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	1e-29
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	3e-29
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	3e-29
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	5e-29
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	8e-29
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	1e-28
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	1e-28
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	2e-28
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	2e-28
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	3e-28
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	8e-27
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	1e-25
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	7e-25
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	1e-24
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	3e-24
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	5e-24
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	7e-24
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	2e-23
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	4e-23
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	4e-23
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	5e-23
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	7e-23
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	9e-23
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	1e-22
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	1e-22
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	1e-22
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	2e-22
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	2e-22
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	4e-22
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	4e-22
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	3e-21
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	4e-21
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	1e-19
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	4e-19
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	5e-19
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	9e-19
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	2e-18
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	2e-16
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	2e-16
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	4e-14
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	1e-12

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  161 bits (407), Expect = 3e-49
 Identities = 88/167 (52%), Positives = 116/167 (69%)

Query: 189 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTN 248
           VT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P   F Q++   LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 249 RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFF 308
           RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  + G  GVVEC+FV SQ T+ P+F
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 120

Query: 309 ASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 355
           ++ + LG++G E+   +G ++ +E   + +A  EL  SI+KG  F K
Sbjct: 121 STPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVK 167

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  158 bits (400), Expect = 3e-48
 Identities = 87/168 (51%), Positives = 110/168 (65%), Gaps = 1/168 (0%)

Query: 189 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTN 248
           VT LD++R+NTFVAE+ G  P +V+VPV+GGH+GVTILPLLSQV     FT++E   LT 
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS-FTEQEVADLTK 59

Query: 249 RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFF 308
           RIQN GTEVVEAKAG GSATLSM  AA +F  + +R L+G+ GVVECA+V        FF
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFF 119

Query: 309 ASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 356
           +  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct: 120 SQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 167

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  143 bits (362), Expect = 7e-43
 Identities = 92/143 (64%), Positives = 115/143 (80%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 166 STVPIAAEVFKKAGTYDPKKLLG 188
           ST+PI AEVFKK G Y+P K+ G
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  123 bits (310), Expect = 3e-35
 Identities = 84/145 (57%), Positives = 103/145 (71%), Gaps = 3/145 (2%)

Query: 46  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 103
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 62  -DATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLG 188
           VN+TV IAAEV KKAG YD  KL G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  113 bits (284), Expect = 6e-31
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTGA---VV 97
            +A+ GAAG I   L   +    +        L L     +      ++     +   ++
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 98  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAT 156
           R              +D  ++    PR PGM R  L +IN  I     + +      N  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 157 VNLISNPVNSTVPIAAE 173
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  113 bits (283), Expect = 6e-31
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 191 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----FTQEETEYL 246
           +LD  R  +F+A  LG+  +D++  V+GGH    +  +                E  + L
Sbjct: 3   VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKL 62

Query: 247 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELP 306
             R +NGG E+VE     GSA  + A + V+  ++     R                +  
Sbjct: 63  VERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESI-VLDRKRVLPCAVGLEGQYGIDKT 120

Query: 307 FFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
           F    V+LGR G E+I+++  L++ +   L+K+ K +  + + 
Sbjct: 121 FVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKM 162

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  108 bits (272), Expect = 1e-29
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           K+  +GA G +G   A    +N  V  + L D+      G   D++H   G      +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
               + L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLGV 189
           ++    I      K       ++ G+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  108 bits (270), Expect = 3e-29
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 12/149 (8%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVS--------VLHLYDVVNTPGVTADISHMDTGAVV 97
           +VA+ GAAG IG  L   +    ++         +L +   +                ++
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 98  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAT 156
            G       + A    D  ++    PRK GM R DL  +N  I       +A+    +  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 157 VNLISNPVNSTVPIAAEVFKKAGTYDPKK 185
           V ++ NP N+   IA   +K A   +P+ 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  107 bits (269), Expect = 3e-29
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           KVAI+GA G +G   A  M +    + L L DV     +   +        +        
Sbjct: 3   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 61

Query: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
             + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + ++SNPV+
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 166 STVPIAAEVFKKAGTYDPKKLLG 188
               +     +K       K++G
Sbjct: 122 IITYMI----QKWSGLPVGKVIG 140

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  107 bits (267), Expect = 5e-29
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           K+ I+G  G +G   A  + +      + L DV         +  +      R       
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
               L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 166 STVPIAAEVFKKAGTYDPKKLLG 188
               +    F K    DP+K+ G
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  106 bits (266), Expect = 8e-29
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 8/145 (5%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+A++GA G +G  LA       +   + L D+          D+ H  +        G 
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
              E      D+V+I AG  +KPG +R +L      I++ +   + K  PNA   LI+NP
Sbjct: 62  DDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLG 188
           V+    IA  V +K       ++ G
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  106 bits (266), Expect = 1e-28
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL 101
           KV+++GAAG +G      + +  +   +   D+ +    T G  AD +H    A      
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH--GIAYDSNTR 59

Query: 102 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161
            +        G D+V+I AG+PR+PG TR DL   NA I+  +   + +   +      S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 162 NPVNSTVPIAAEVFKKAGTYDPKKLLG 188
           NPV+    +      +AG    ++++G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  107 bits (267), Expect = 1e-28
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 7/163 (4%)

Query: 191 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEY----L 246
           +LD  R  TF+A   G+  +DV   ++GGH    +             ++         +
Sbjct: 3   VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQI 62

Query: 247 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELP 306
             R + GG E+V      GSA  + A A  +  +A L+  +    V         + ++ 
Sbjct: 63  VERTRKGGGEIVNLLKT-GSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIY 121

Query: 307 FFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
           F    V LG  G E+I +L PLNE E   L  + K +  ++  
Sbjct: 122 FG-VPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDT 162

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  105 bits (264), Expect = 2e-28
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 46  KVAILGAAGGIGQPLAML-----MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV--- 97
           +V + GAAG I   L        +       +L L D+    GV   +        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 98  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 157
           +  +   + E A   +D+ I+   +PR+ GM R DL   N  I +     + K    +  
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 158 NL-ISNPVNSTVPIAAEVFKK 177
            + + NP N+    A++    
Sbjct: 125 VIVVGNPANTNCLTASKSAPS 145

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  105 bits (263), Expect = 2e-28
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+ ++GA G +G   A  +    L   L L DVV     G   D+       +    +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
                     D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLGV 189
           ++    +A            ++++G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  105 bits (262), Expect = 3e-28
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQP 104
           K++I+GA G +G   A  +    L  ++ L  V   P G   D+            +   
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 164
                    D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 165 NSTVPIAAEVFKKAGTYDPKKLLG 188
           ++   +AAEV      +  ++++G
Sbjct: 122 DAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  101 bits (253), Expect = 8e-27
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 42  AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF 100
           A   K+ ++G+ G IG  +A L+    L  V+    V N P G   D SH +  A     
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 101 LGQPQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 155
           +      + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 156 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 189
            + +++NPV+  V +      +       K++G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 99.4 bits (247), Expect = 1e-25
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 13/176 (7%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 249
           T LD  RA   +A  LG+   DV   ++ G+   T  P ++  K      +         
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 250 IQNGGTEVVEAKAGAG---------SATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 300
                 E +      G         S+ +S A A          G      V        
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120

Query: 301 Q---VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
               V +   ++  V +  +  + +  L P+N++ R  ++   KELA   +    F
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEF 175

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 96.2 bits (239), Expect = 7e-25
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           KV ++G  G +G   A  M    +     + DVV        +   D  A          
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 165
             +     DLV+I AG P+KPG +R DL N N  I+ ++ + +     +    + +NPV+
Sbjct: 66  EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD 125

Query: 166 STVPIAAEVFKKAGTYDPKKLLG 188
               I      K   +  ++++G
Sbjct: 126 ----ILTYATWKFSGFPKERVIG 144

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 96.1 bits (238), Expect = 1e-24
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 7/169 (4%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ-----EETE 244
             LD  R    + E LG+        V+G H                         ++ +
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 245 YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTE 304
                 ++      E     G  + ++  +    A+  ++ L     V         + +
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKD 122

Query: 305 LPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
             F +    L   G   I ++  L   E   L+K+   L   IQK + F
Sbjct: 123 NVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATTLW-DIQKDLKF 169

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 95.1 bits (236), Expect = 3e-24
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTGAVVRGFLGQP 104
           KVA++G+ G IG  +  L  +  L  V+    V   P   A D+SH+ +       +   
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67

Query: 105 -QLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 158
              E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP   + 
Sbjct: 68  YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127

Query: 159 LISNPVNSTVPIAAEVFKKAGTYDPKKLLG 188
           +++NP++  V +  E            + G
Sbjct: 128 VVTNPLDCMVKVMCEASG----VPTNMICG 153

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 94.0 bits (233), Expect = 5e-24
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 44  GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFL 101
           G +V ++GA G +G      +    +   + L D   +  +    D +H    A     +
Sbjct: 6   GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI 64

Query: 102 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 161
                +      DLV+I AG  +KPG TR DL + N  I R++ E +          + +
Sbjct: 65  WHGDYD-DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 162 NPVNSTVPIAAEVFKKAGTYDPKKLLG 188
           NPV+    I      K      ++++G
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIG 146

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.9 bits (233), Expect = 7e-24
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 103
           K+ ++G  G +G   A+ + +  L   L L D       G   D+ H     +    +  
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSL-FLSTPKIVF 78

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
            +  N      LVII AG     G TR DL   N  I++ +  G+ +  P+  + +++NP
Sbjct: 79  GKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLG 188
           V+    +      K   +   +++G
Sbjct: 139 VDILTYVVW----KISGFPVGRVIG 159

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 93.4 bits (231), Expect = 2e-23
 Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 17/174 (9%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILP----------LLSQVKPPCSFT 239
           T LD  R    +AE++ +D R V   ++G H                 +   VK      
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIK 60

Query: 240 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 299
           +++   +   +++   E+++ K   G+    +A A  + + A L        +    ++ 
Sbjct: 61  EDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKAILNDENAV--LPLSVYMD 115

Query: 300 SQVTEL-PFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 352
            Q      +  +   + R G + I ++ PL ++E   ++K+  +L   +    +
Sbjct: 116 GQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTDAFA 168

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 92.2 bits (228), Expect = 4e-23
 Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 3/160 (1%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 249
             LD  R    ++E      ++V+  ++G H G   +P+ S+V    +  +   +     
Sbjct: 3   GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQL 61

Query: 250 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFA 309
           + +     ++     G+     A       +A L                    +   F 
Sbjct: 62  LGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHED-TAFG 120

Query: 310 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
             V LG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 121 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 159

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 92.0 bits (228), Expect = 4e-23
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 103
           K+ ++G  G +G   A+ +    L   L L DV+     G   D+ H          +  
Sbjct: 22  KITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 80

Query: 104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 163
                      +V++ AGV ++ G +R +L   N  + + +   I K  P+  + ++SNP
Sbjct: 81  KDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP 139

Query: 164 VNSTVPIAAEVFKKAGTYDPKKLLG 188
           V+    +      K       +++G
Sbjct: 140 VDILTYVT----WKLSGLPKHRVIG 160

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 92.2 bits (228), Expect = 5e-23
 Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 17/172 (9%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------ 237
           T LD  R    +A+  G++ ++V   + G H    +    S                   
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 238 FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAF 297
              ++ E +   ++N   +++  K     A   +  + V   +A L        V     
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYA---IGMSGVDIIEAVLHDTNRILPVSSMLK 117

Query: 298 VASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
               ++++        L RQG        P+++ E   L+++ + L  +  +
Sbjct: 118 DFHGISDICMS-VPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 167

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 91.8 bits (227), Expect = 7e-23
 Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 8/170 (4%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYL 246
           T LD  R    + +   +DPR VD  ++G H G +     S       P     +E    
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVS 59

Query: 247 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT--- 303
            + +      V        +   +  Y          + +  D   V             
Sbjct: 60  DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGL 119

Query: 304 ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
              +  +   +G  G ++I +  PL+  E   ++ +   L   +  G++ 
Sbjct: 120 NDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVLNDGLAE 168

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.5 bits (226), Expect = 9e-23
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 10/170 (5%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------E 241
             LD  R    + E LG++P      V+G H   ++           +           +
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 242 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ 301
             ++  N  +       E     G  + ++  +    A + L+ L+    V         
Sbjct: 63  NKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHG 122

Query: 302 VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGI 351
           + E  F +    LG  G  +  ++  +   E   L+K+   L   +QK +
Sbjct: 123 IKEEVFLSIPCVLGESGITDFVKV-NMTAEEEGLLKKSADTLWN-MQKNL 170

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 91.1 bits (225), Expect = 1e-22
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----------CSFT 239
           T+LD  R  T +A+  G  PR V V V+G H    +      +                 
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 240 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 299
            +  E    + +    E++E K     A        V+      + +   +  +E     
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV 121

Query: 300 SQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 353
             +      +  V LG+ G E I +L  LNE E     K+   L  +I +  + 
Sbjct: 122 KDL----CISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAINEITAE 170

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 91.1 bits (225), Expect = 1e-22
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 249
           T LD +R    +A+  G+   +V   ++G H G +++PLLS         Q+   +    
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 250 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ----VTEL 305
           I     +V               +         +R +  +   +                
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRD 121

Query: 306 PFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
                 V++GR G EE+  +  L++ E I   K+ + +    ++
Sbjct: 122 VCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 164

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 90.7 bits (224), Expect = 1e-22
 Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 3/162 (1%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 249
           T+LD  R    V E   LDPR V    +G H G +     S V+          +     
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 250 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFA 309
           +     E  +      +     +Y     A    + +  DA                + +
Sbjct: 61  LAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMG-MYLS 119

Query: 310 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGI 351
               +GR G      L  L   E+  L +++  +     + +
Sbjct: 120 YPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIV 160

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 90.7 bits (224), Expect = 2e-22
 Identities = 20/173 (11%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 240
           T+LD  R    + E   + P++V   ++G H    +              +         
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 241 -EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 299
            ++ E +   +++   +++E K               +        +   +  ++  +  
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE 120

Query: 300 SQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 352
             V    +      + R G  E+ ++  LN+ E+     +   L   + +  +
Sbjct: 121 RDV----YIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARAFT 168

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 89.8 bits (222), Expect = 2e-22
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 11/149 (7%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYD----VVNTPGVTADISHMDTGAVV--RG 99
           KV I+GA+G +G   A+L+   P +  L L      +    G+  DI     G       
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 100 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 159
           ++   +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C    + +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK-IFV 120

Query: 160 ISNPVNSTVPIAAEVFKKAGTYDPKKLLG 188
           I+NPV+     A         ++  ++ G
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 89.9 bits (222), Expect = 4e-22
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 18/174 (10%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 240
             LD  R    +AE LG+ P      ++G H G + + + S V       Q         
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTD 61

Query: 241 ---EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAF 297
              E  + +   +     EV++ K     A   +  +     ++ L+ L     V     
Sbjct: 62  NDSENWKEVHKMVVESAYEVIKLKGYTNWA---IGLSVADLIESMLKNLSRIHPVSTMVK 118

Query: 298 VASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGI 351
               +    F +    L  +G   +     L + E   L+K+   L   IQK +
Sbjct: 119 GMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVAQLKKSADTLWD-IQKDL 170

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 89.0 bits (220), Expect = 4e-22
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 10/148 (6%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 105
           K+ I+G  G +G  +A  +    +       D          I   D  A +        
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 106 LEN-ALTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 160
            +  AL   D+VI   G  +     P   R       + +V+++   + +   +  + +I
Sbjct: 62  NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121

Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKKLLG 188
           SNPV+    +   +F+    +   K++G
Sbjct: 122 SNPVD----VITALFQHVTGFPAHKVIG 145

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 87.2 bits (215), Expect = 3e-21
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 16/171 (9%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 240
           T+LD +R    ++E LG+D ++V   ++G H    +           +  +         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 241 --EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV 298
             E+ + +   ++  G  +++ K              V+        +R    V+   + 
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYG 120

Query: 299 ASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
                     +    +  +G +E+ Q   L   E   L  + +++   + +
Sbjct: 121 IED----VAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 166

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 86.8 bits (214), Expect = 4e-21
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 14/162 (8%)

Query: 191 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPL---------LSQVKPPCSFTQE 241
           +LD  R   ++++ L + PRDV+  +VG H    +L           L +       +  
Sbjct: 2   VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61

Query: 242 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ 301
           E E + +R  N   E+V   A    A  +      +     L+ +   + ++E  +  S 
Sbjct: 62  ELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSD 121

Query: 302 VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 343
           +    F  + V LG  G E++ +L  LN  E+   ++A  E 
Sbjct: 122 I----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAET 158

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 83.5 bits (206), Expect = 1e-19
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 12/164 (7%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET------ 243
           T LD  RA   +A   G+    V    + G+   T +P     K      +E        
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 244 -EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ- 301
            E  T  +Q  G  +++      S+  S A +      + +             +     
Sbjct: 61  EEEFTITVQKRGGALIQKW--GRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 118

Query: 302 --VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 343
             + E   F+   R    G  E+      +++    ++K++ EL
Sbjct: 119 YGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAEL 162

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 81.7 bits (201), Expect = 4e-19
 Identities = 32/164 (19%), Positives = 54/164 (32%), Gaps = 7/164 (4%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK----PPCSFTQEETEY 245
           T LD  RA   +A+  G     +    V G+   T+ P L   +    P       E   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 246 LTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ--VT 303
                          +A   S+  S A AA++       G      V        +  + 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIP 121

Query: 304 ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 347
           E   ++  V   + GA  + +   +NE+ R  +E   +EL   +
Sbjct: 122 EGIVYSFPV-TAKDGAYRVVEGLEINEFARKRMEITAQELLDEM 164

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 81.1 bits (199), Expect = 5e-19
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 13/171 (7%)

Query: 191 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFT---------QE 241
           MLD  R   +VA+ L + PRDV   V+G H    +  +                    ++
Sbjct: 3   MLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62

Query: 242 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ 301
           + E +    +  G E+V    G GSA  + A +AV  A + L   +              
Sbjct: 63  QLEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYG 121

Query: 302 VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 352
           + +  F      +G  G E + +L  LNE E+   +K+  ++   + K ++
Sbjct: 122 LKD-MFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMA-LNKAVA 169

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 80.1 bits (197), Expect = 9e-19
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 32/167 (19%)

Query: 46  KVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF 100
           ++A++G  G    P  +   +    +  +  +  YD+      +  D          +  
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 101 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA----------- 149
           +     E A+     VI         G   D+   +  G++     G+            
Sbjct: 61  ISD-TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 150 --------KCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 188
                   +   NAT+   +NP         E  +     + +K +G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 79.5 bits (195), Expect = 2e-18
 Identities = 23/158 (14%), Positives = 44/158 (27%), Gaps = 7/158 (4%)

Query: 192 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----FTQEETEYL 246
           LD  RA + +A   G     ++   V G+   T+       +   +        +     
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 247 TNRIQNGGTEVVEAKAGAGSATLSM-AYAAVKFADACLRGLRGDAGVVECAFVASQVTEL 305
           T     G        A   S+  S    A     D  L        +   +  +  + E 
Sbjct: 63  TFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG 122

Query: 306 PFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 343
             F   V       + +  L  ++ + +  +     EL
Sbjct: 123 VIFGFPVTTENGEYKIVQGL-SIDAFSQERINVTLNEL 159

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 73.9 bits (181), Expect = 2e-16
 Identities = 26/161 (16%), Positives = 42/161 (26%), Gaps = 30/161 (18%)

Query: 46  KVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTP--GVTADISH---MDTGAV 96
           K+A +G  G    P  +   I       V  L L D+                 ++   V
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 97  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI-------- 148
                       AL G D V     V       +D+   +  G++     G         
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 149 ------------AKCCPNATVNLISNPVNSTVPIAAEVFKK 177
                        + CP+A +   +NP            K+
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ 162

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 73.5 bits (180), Expect = 2e-16
 Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 30/162 (18%)

Query: 45  FKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTGAV 96
           F + I G  G    P   L +L  +    +  L LYD      +      D+   +    
Sbjct: 4   FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPD 62

Query: 97  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA------- 149
           +         E A T +D V+    V +      D+   +  G+V     G         
Sbjct: 63  IEFA-ATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMR 121

Query: 150 -------------KCCPNATVNLISNPVNSTVPIAAEVFKKA 178
                        K  P+A +   SNP          +   +
Sbjct: 122 SIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS 163

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 25/166 (15%), Positives = 41/166 (24%), Gaps = 34/166 (20%)

Query: 44  GFKVAILGAAGGIGQPLAM---LMKINPL-VSVLHLYDVV--NTPGVTADISHM-DTGAV 96
             K+ I+GA G     L +   L K   L  S + L D+       +        +    
Sbjct: 2   SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA 60

Query: 97  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI-------------------- 136
              F     L++ +   D VI  A V     + +                          
Sbjct: 61  DLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYY 120

Query: 137 ------NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK 176
                        +   I K  P A     +NP+     +      
Sbjct: 121 TFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 63.1 bits (153), Expect = 1e-12
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 12/160 (7%)

Query: 190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 249
             LD  R    +      + R     ++G H G ++    S          E  E   N 
Sbjct: 2   NQLDSQRLKERLYNAGARNIRRA--WIIGEH-GDSMFVAKSLADFDGEVDWEAVE---ND 55

Query: 250 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFA 309
           ++    EV++     G+     A A  +   A +                  +  +    
Sbjct: 56  VRFVAAEVIK---RKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIENV-AVG 111

Query: 310 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 349
              +LG+ GAE +  +  L++ E   L  + K L   +++
Sbjct: 112 VPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.98
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.98
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.98
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.97
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.97
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.97
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.97
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.97
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.97
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.97
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.96
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.96
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.96
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.96
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.96
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.96
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.96
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.96
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.95
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.95
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.95
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.94
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.94
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.92
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.92
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.91
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.54
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.82
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.68
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.59
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.42
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.42
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.4
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.35
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.33
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.32
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.31
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.27
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.24
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.2
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.15
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.14
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.12
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.12
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.06
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.99
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	97.95
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	97.94
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	97.93
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	97.92
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	97.89
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	97.87
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.8
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.76
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.73
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.7
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.68
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.59
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.56
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	97.55
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.54
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.51
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	97.47
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.42
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	97.41
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.4
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	97.39
d1vjta2	278	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.37
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.35
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.34
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.3
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.3
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.3
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.28
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.27
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.24
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.14
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.12
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.08
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.04
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.0
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.99
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.94
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.87
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.87
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.75
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.7
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.65
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.63
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	96.59
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.55
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.54
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.53
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	96.52
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.52
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.44
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.41
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.37
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.34
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.31
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.31
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.31
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.29
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.28
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.27
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.27
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.24
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.23
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.22
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.22
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.21
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.21
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.21
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.18
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.13
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.13
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.13
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.12
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.11
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.06
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.05
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.04
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.03
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.99
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.99
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.97
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.95
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.94
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	95.9
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.86
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.81
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.8
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.78
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.76
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.74
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	95.72
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.68
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.66
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.66
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.65
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.65
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.64
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.59
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.56
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.55
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.55
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.54
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.53
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.52
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.51
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.51
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.49
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.41
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.35
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.35
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.34
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.32
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.31
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.3
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.28
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.27
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.21
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.19
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.19
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	95.16
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.13
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	95.06
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.04
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.98
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.96
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	94.9
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	94.83
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.83
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.74
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.74
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.73
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.69
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	94.65
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.64
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.63
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.58
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	94.51
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.51
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.51
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.41
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.37
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.37
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.2
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.08
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.05
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.03
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.9
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.9
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.87
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.86
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	93.8
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.75
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.74
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.73
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.65
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.62
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.59
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	93.49
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.48
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.41
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	93.31
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	93.25
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.25
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.2
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.2
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.19
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.16
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.15
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.14
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	93.1
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.95
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.93
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	92.91
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.9
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.89
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	92.8
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.75
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.74
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.71
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.66
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.47
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.47
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.34
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.18
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.12
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	92.05
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.85
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.85
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	91.54
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.44
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.44
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.38
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	91.37
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.34
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.33
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.11
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	91.1
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.1
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	91.09
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	91.08
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	90.9
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.83
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.81
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.59
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.48
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	90.32
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	89.86
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.79
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	89.71
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	89.63
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.58
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.23
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	89.15
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.07
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.05
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	88.9
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	88.63
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.59
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.16
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	87.98
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	87.84
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	87.57
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.42
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	87.33
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.22
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.09
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.69
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	86.51
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	86.47
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	86.44
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	86.36
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	86.07
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	86.05
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	86.02
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.89
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	85.87
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	85.83
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	85.49
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	85.1
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	84.75
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	84.45
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.39
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	84.3
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	84.24
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.13
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	84.07
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	83.36
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	82.9
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	81.96
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	81.8
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.59
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.52
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.5
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	81.36
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	80.82
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	80.73
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	80.64
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	80.45
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	80.07
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	80.03

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.9e-35  Score=247.96  Aligned_cols=143  Identities=64%  Similarity=1.084  Sum_probs=133.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK  125 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~  125 (356)
                      ||+||||+|+||+++|+.|+.+++++||+|+|+++.+++++|++|.........+..++|++++++|||+||+++|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            99999977999999999999999999999999988899999999987655555544567778999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          126 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       126 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      +|++|.+++..|.+++++++++|.+++|+++++++|||+|++++++++++++.++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999988889999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.6e-35  Score=245.75  Aligned_cols=143  Identities=59%  Similarity=0.968  Sum_probs=131.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      |||+||||+|+||+++|+.|+.+ +..+||+|+|+++ ++|+++||.|+........+.+++++ ++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~-~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCH-HHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCc-cccCCCCEEEECCCc
Confidence            79999997799999999998754 7889999999987 78999999999766666666556665 789999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      |+++|++|.|++..|.+++++++++|.+++|+++++++|||+|.+++++++++++.++||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=9.1e-35  Score=245.33  Aligned_cols=139  Identities=27%  Similarity=0.414  Sum_probs=124.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |.||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+... ...... .++|+ ++++|||+||+++
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~-~~~~~-~~~~daDvVVita   77 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID-GSDDP-EICRDADMVVITA   77 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceee-cCCCH-HHhhCCcEEEEec
Confidence            579999998 999999999999999999999999988  78999999998532 222322 24565 7899999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      |.|+++|++|+|++..|++++++++++|.+++|++++|++|||+|+||+++    ++.+|||++||||+
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~----~~~sg~p~~rViG~  142 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEEC
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHH----HHHHCCChhhccCC
Confidence            999999999999999999999999999999999999999999999998754    78899999999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.9e-34  Score=242.13  Aligned_cols=138  Identities=28%  Similarity=0.501  Sum_probs=124.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+..  ....+.. .++|+ ++++|||+||+++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~-~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccc-cCCCH-HHhccccEEEEec
Confidence            89999998 999999999999999999999999988  7899999999742  1222322 24675 7899999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      |.|+++|++|.+++.+|++++++++++|.++||+++++++|||+|++|+++    ++.+|||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViG~  142 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEEC
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHH----HHHHCCChhcEecC
Confidence            999999999999999999999999999999999999999999999998754    78899999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=4.8e-34  Score=242.53  Aligned_cols=138  Identities=25%  Similarity=0.338  Sum_probs=124.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      ..||+|||| |+||+++|+.|+++++++||+|+|+++  ++|+++||+|+...  ..+...  ++|+ ++++|||+||++
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~d~-~~l~daDvvvit   81 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGDY-DDCRDADLVVIC   81 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECCG-GGTTTCSEEEEC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEE--ECCH-HHhccceeEEEe
Confidence            359999998 999999999999999999999999988  78999999998542  234443  3565 889999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      +|.|+++|++|.|++.+|+++++++++.|.++||++|+|++|||+|++|+++    ++.+|||++||||+
T Consensus        82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~----~k~sg~p~~rViG~  147 (148)
T d1ldna1          82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGS  147 (148)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEEC
T ss_pred             cccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHH----HHHHCcChhheecC
Confidence            9999999999999999999999999999999999999999999999998764    77889999999996

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-33  Score=237.74  Aligned_cols=137  Identities=29%  Similarity=0.506  Sum_probs=123.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  ++|+++|+.|... .......  ++|+ ++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~--~~~~-~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY--AGDY-ADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE--ECCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccccc--CCcH-HHhcCCCEEEEecc
Confidence            79999998 999999999999999999999999988  7899999999753 2333433  3464 78999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      .|+++|++|.|++.+|++++++++++|.++||++|++++|||+|++|+++    ++.+|||++||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~----~k~sg~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHHCcCccceeCc
Confidence            99999999999999999999999999999999999999999999998754    67789999999995

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=4.2e-33  Score=234.95  Aligned_cols=137  Identities=29%  Similarity=0.393  Sum_probs=116.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      .||+|||| |+||+++++.|+.+++++||+|+|+++  ++|+++||.|+... .....+  +.|+ ++++|||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~--~~~~-~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGDY-SDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CG-GGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe--eCcH-HHhCCCceEEEecc
Confidence            49999998 999999999999999999999999988  78999999997532 344443  3464 78999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      .++++|++|.+++.+|++++++++++|.+++|++++|++|||+|++|+++    ++.+|||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~----~k~sg~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHH----HHHHCCCccceecC
Confidence            99999999999999999999999999999999999999999999998754    78899999999996

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3e-33  Score=235.49  Aligned_cols=137  Identities=28%  Similarity=0.399  Sum_probs=121.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .||+||||+|+||+++|+.|+.+++++||+|+|++.    ++|+++||.|+.. ....+..  +.|+ ++++|||+||++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~--~~~~-~~~~~aDiVvit   77 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR--QGGY-EDTAGSDVVVIT   77 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE--ECCG-GGGTTCSEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEe--eCCH-HHhhhcCEEEEe
Confidence            399999966999999999999999999999999864    6789999999542 2333433  2464 789999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      +|.|+++|++|.+++..|+++++++++.|.+++|+++++++|||+|+||++    +++.+|||++||||
T Consensus        78 aG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~----~~k~sg~~~~rViG  142 (142)
T d1o6za1          78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH----LYEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH----HHHHSSSCGGGEEE
T ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHH----HHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999865    47889999999998

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=3.2e-33  Score=239.71  Aligned_cols=139  Identities=22%  Similarity=0.344  Sum_probs=124.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      .+..||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+...  .....  .+.|+ ++++|||+||
T Consensus        18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~--~~~d~-~~~~~adiVV   93 (160)
T d1i0za1          18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV--ADKDY-SVTANSKIVV   93 (160)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEE--ECSSG-GGGTTCSEEE
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEE--eccch-hhcccccEEE
Confidence            34569999998 999999999999999999999999987  89999999997532  22222  34675 7899999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      +++|.|+++|++|++++..|+++++++++.|.+++|++++|++|||+|++|+++    ++.+|||++||||
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~----~k~sglp~~rViG  160 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT----WKLSGLPKHRVIG  160 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999998764    7788999999998

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=2.1e-33  Score=236.98  Aligned_cols=138  Identities=32%  Similarity=0.504  Sum_probs=123.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  +++.++|+.|...  ....+.. .++| +++++|||+||+++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~-~~~~-~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT-GSND-YADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEE-EESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEE-ecCC-HHHhcCCeEEEEEE
Confidence            79999998 999999999999999999999999998  6888999988742  2233332 2356 48899999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      |.|+++|++|.+++.+|+++++++++.|.++||++|++++|||+|++|+++    ++.+|||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~----~~~sg~p~~rviG~  142 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGM  142 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEE
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH----HHHhCCChHhEeeC
Confidence            999999999999999999999999999999999999999999999998764    67789999999996

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.98  E-value=1.1e-33  Score=239.64  Aligned_cols=137  Identities=18%  Similarity=0.252  Sum_probs=116.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC--CeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+...  ......  ++|+ ++++|||+||+++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~--~~d~-~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCcccee--ccCH-HHhccccEEEEec
Confidence            49999998 999999999999999999999999988  78999999997532  233433  3565 7899999999999


Q ss_pred             CCCC----CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          121 GVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       121 g~~~----~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      |.++    ++|++|++++..|+++++++++.|.++||++|+|++|||+|++|+++    ++.+|||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF----QHVTGFPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH----HHHhCCCccceeCc
Confidence            9876    78899999999999999999999999999999999999999998764    78889999999995

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.98  E-value=2.7e-32  Score=230.61  Aligned_cols=138  Identities=31%  Similarity=0.481  Sum_probs=120.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHHHHhcCCC--CCeEEEE-eCCCChhhhhCCCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--GAVVRGF-LGQPQLENALTGMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g~~~dl~~~~~--~~~v~~~-~~t~d~~~al~~aDiVI  117 (356)
                      |||+||||+|+||+++|+.|+.+++++||+|+|+++    ++|+++||.|+..  ...++.. .+++|+ ++++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~-~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL-RIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG-GGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH-HHhccceEEE
Confidence            799999977999999999999999999999999986    4788999999642  2333332 224464 7999999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      ++||.|+++|++|.|++..|+++++++++.|.++||+++ +++|||+|+|++++    ++.+|||++||||
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~i-ivVtNPvD~mt~~~----~k~sg~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKI-FVITNPVDVMTYKA----LVDSKFERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEE-EECSSSHHHHHHHH----HHHHCCCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeE-EEEcCchHHHHHHH----HHHHCcCcccccC
Confidence            999999999999999999999999999999999999886 46899999998764    7788999999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.98  E-value=6.7e-33  Score=234.75  Aligned_cols=139  Identities=25%  Similarity=0.390  Sum_probs=114.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      +.|||+|||+ |+||+++|+.|+++++++||+|+|+++  ++|+++|++|+... ......  ++|+ ++++|||+||++
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~--~~d~-~~~~~adivvit   79 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY--SGEY-SDCKDADLVVIT   79 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE--ECCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe--eccH-HHhccccEEEEe
Confidence            3579999998 999999999999999999999999988  79999999997532 223333  3576 779999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      +|.|+++|++|.+++..|+++++++++.|.++||++++|++|||+|++++++    ++.+|||++||||+
T Consensus        80 ag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~----~k~sg~p~~rViG~  145 (146)
T d1ez4a1          80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGS  145 (146)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHH----HHHHCcCccceecC
Confidence            9999999999999999999999999999999999999999999999998754    77889999999996

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.4e-33  Score=236.93  Aligned_cols=140  Identities=24%  Similarity=0.369  Sum_probs=124.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeCCCChhhhhCCCcEEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      .+..||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+... ..-... .++|+ ++++|||+||+
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~-~~~d~-~~~~~adivvi   93 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIV-FGKDY-NVSANSKLVII   93 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEE-EESSG-GGGTTEEEEEE
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEE-eccch-hhhccccEEEE
Confidence            34569999998 999999999999999999999999987  78999999998642 211222 23565 78999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      ++|.|+++|++|.+++..|++++++++++|.+++|+++++++|||+|++|+++    ++.+|||++||||
T Consensus        94 tag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~----~k~sg~p~~rV~G  159 (159)
T d2ldxa1          94 TAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVV----WKISGFPVGRVIG  159 (159)
T ss_dssp             CCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHH----HHHHCSCTTTEEE
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999998764    7888999999998

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=2.7e-31  Score=230.17  Aligned_cols=167  Identities=53%  Similarity=0.837  Sum_probs=144.8

Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  268 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  268 (356)
                      +|.||++||+++||++||++|++|+++|+|+||+++++|+||++.++..+..++++++.+++++++++|++.+.+.+++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            47899999999999999999999999999999776889988988887778888999999999999999999886667788


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018433          269 LSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ  348 (356)
Q Consensus       269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~  348 (356)
                      ++++.++++++.+++.+.++...+.++++......+++|||+||+||++|+++++++++|+++|+++|++|++.||+.++
T Consensus        81 ~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~~~lk~~I~  160 (169)
T d1mlda2          81 LSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK  160 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999876644444544443221224689999999999999999999757999999999999999999999


Q ss_pred             Hhhhhhc
Q 018433          349 KGISFSK  355 (356)
Q Consensus       349 ~~~~~~~  355 (356)
                      ++++|++
T Consensus       161 ~g~~fi~  167 (169)
T d1mlda2         161 KGEEFVK  167 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999975

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.97  E-value=2.5e-31  Score=229.24  Aligned_cols=153  Identities=28%  Similarity=0.471  Sum_probs=139.7

Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----CCCHHHHHHHHHHHhcchhHHHhhhccCC
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAG  265 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg  265 (356)
                      +||++||++++|+++|+++++|+++|||+||+ +++|+||++++.+     .++++.++++.++++++++++++.+ |+|
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            69999999999999999999999999999999 9999999999854     2566678899999999999999865 789


Q ss_pred             cccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHH
Q 018433          266 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL  343 (356)
Q Consensus       266 ~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l  343 (356)
                      ++.|++|.++++++++++.+.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus        81 sa~~a~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~s~P~~lg~~Gv~~i~~l-~Ls~~E~~~l~~sa~~l  156 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIV  156 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHheeccCC---CEEEEeeeeccccCCCCcEEEEeeEEcCCeeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999998865   477776 678998 77999999999999999999995 99999999999999999


Q ss_pred             HHHHHH
Q 018433          344 AGSIQK  349 (356)
Q Consensus       344 ~~~~~~  349 (356)
                      ++.++.
T Consensus       157 ~~~i~~  162 (163)
T d1guza2         157 DENCKM  162 (163)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            998864

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=2.1e-31  Score=226.22  Aligned_cols=145  Identities=18%  Similarity=0.248  Sum_probs=128.7

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCC-cccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  268 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  268 (356)
                      |.|||+||++.|++..+   .++ +++|+||||+ ++||+||.+++...   .+++++.+.++.++++|++.   ||+|+
T Consensus         2 t~LDsaR~r~~l~~~~~---~~v~~a~ViGeHGd-s~vp~~S~~~i~g~---~~~~~i~~~v~~~g~eIi~~---kG~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAGA---RNIRRAWIIGEHGD-SMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIKR---KGATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC---BSCCCCCEEBCSST-TCEECGGGCCCBSC---CCHHHHHHHHHTTHHHHHHH---HSSCC
T ss_pred             CccHHHHHHHHHHccCC---CCcceeEEEecCCC-ccccccccccccCc---cchhHhHHHHHHHHHHhhhh---cccee
Confidence            68999999999987654   445 8999999999 99999999998543   24678899999999999994   58999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 018433          269 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS  346 (356)
Q Consensus       269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~  346 (356)
                      ||+|.++++++++|++|.+   .++|++ +++|+| .+|+|+|+||+||++|++ ++++ +|+++|+++|++|++.||+.
T Consensus        72 ~gia~a~~~iv~aIl~d~~---~v~pvs~~l~geyG~~dv~lsvP~vig~~Gve-i~~l-~L~~~E~~~l~~Sa~~ik~~  146 (152)
T d1ojua2          72 FGPAVAIYRMVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRER  146 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCC---CceeeeEEeccccCCCCEEEEeEEEECCCceE-EEcC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999975   499997 789999 779999999999999985 8885 99999999999999999998


Q ss_pred             HHH
Q 018433          347 IQK  349 (356)
Q Consensus       347 ~~~  349 (356)
                      ++.
T Consensus       147 i~~  149 (152)
T d1ojua2         147 LEE  149 (152)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            875

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.8e-31  Score=226.67  Aligned_cols=167  Identities=53%  Similarity=0.792  Sum_probs=145.4

Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCCCCCHHHHHHHHHHHhcchhHHHhhhccCCccc
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  268 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~ii~~~~gkg~t~  268 (356)
                      +|.||++||++++|+++|++|++|+++|+|+||+.+++|++|++.. ..+++.+++++.+.+++++.++++.+.|++++.
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            4789999999999999999999999999999999666676565543 457788899999999999999999887889999


Q ss_pred             chHHHHHHHHHHHHHcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018433          269 LSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ  348 (356)
Q Consensus       269 ~s~A~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~  348 (356)
                      ||+|.++++++.+|+.+.++...+..+++.....++++|||+||++|++|+++++++++|+++|+++|++|++.||+.++
T Consensus        80 ~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~~s~~~lk~~I~  159 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIA  159 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998766544544444443346789999999999999999999756999999999999999999999


Q ss_pred             HhhhhhcC
Q 018433          349 KGISFSKK  356 (356)
Q Consensus       349 ~~~~~~~~  356 (356)
                      ++++|++|
T Consensus       160 ~~~~fi~~  167 (167)
T d2cmda2         160 LGQEFVNK  167 (167)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999986

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=2.9e-31  Score=228.94  Aligned_cols=154  Identities=29%  Similarity=0.434  Sum_probs=140.7

Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----CCCHHHHHHHHHHHhcchhHHHhhhccCC
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAG  265 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~ii~~~~gkg  265 (356)
                      +||++||++++|++||++|++|+++|||+||+ +++|+||++++++     .+++..++++.+.+++++++|++++ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            59999999999999999999999999999999 9999999998753     2466778999999999999999876 789


Q ss_pred             cccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHH
Q 018433          266 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL  343 (356)
Q Consensus       266 ~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l  343 (356)
                      ++.||+|.++++++++|+.+.+   .++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus        81 s~~~a~a~a~~~i~~~i~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l  156 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAV  156 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHhCCCC---ceeeeeeeeccccCCCCceEEECeEEeCCeeEEEeCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999875   477776 789999 77999999999999999999996 99999999999999999


Q ss_pred             HHHHHHh
Q 018433          344 AGSIQKG  350 (356)
Q Consensus       344 ~~~~~~~  350 (356)
                      +++++..
T Consensus       157 k~~i~~l  163 (164)
T d1uxja2         157 RATLDTL  163 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9999763

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=4.6e-32  Score=230.43  Aligned_cols=139  Identities=30%  Similarity=0.504  Sum_probs=121.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      +..||+|||+ |+||+++++.|+++++ .||+|+|+++  ++|+++|++|...  ........ +.+ +++++|||+||+
T Consensus         2 p~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~-~~~-~~~~~~advvvi   77 (150)
T d1t2da1           2 PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNT-YDDLAGADVVIV   77 (150)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECC-GGGGTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEe-ccc-ccccCCCcEEEE
Confidence            3569999998 9999999999888886 5999999988  7999999999742  22323221 244 588999999999


Q ss_pred             cCCCCCCCCCc-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          119 PAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       119 ~ag~~~~~g~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      ++|.++++|++     |++++..|+++++++++.|.++||++|++++|||+|+||+++    ++.+|||++||||+
T Consensus        78 tag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~~~sg~p~~rViG~  149 (150)
T d1t2da1          78 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL  149 (150)
T ss_dssp             CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             ecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH----HHHHCCCchheecc
Confidence            99999999876     999999999999999999999999999999999999998764    77899999999996

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=6.3e-32  Score=230.80  Aligned_cols=140  Identities=33%  Similarity=0.557  Sum_probs=122.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      +++||+|||| |+||+++|+.|++.++. ||+|+|+++  ++|+++|+.|...  ....... .+++++++++|||+||+
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~-el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-AEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-EECSHHHHHTTCSEEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCc-eEEEEEeccccchhHHHHHhhhccccCCeeEEe-ccCchhhhhcCCCeEEE
Confidence            4579999999 99999999999988864 899999988  7899999999642  1122221 24677889999999999


Q ss_pred             cCCCCCCCCC-----cHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          119 PAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       119 ~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      ++|.++++|+     +|++++..|+++++++++.|.++||+++++++|||+|++|+++    ++.+|||++||||+
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~----~~~sg~p~~rViG~  154 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGM  154 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHhCcChhcEecC
Confidence            9999999985     8999999999999999999999999999999999999998764    67789999999996

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.97  E-value=7.2e-31  Score=227.66  Aligned_cols=152  Identities=17%  Similarity=0.337  Sum_probs=136.7

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-------------CCCHHHHHHHHHHHhcchhH
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-------------SFTQEETEYLTNRIQNGGTE  256 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-------------~~~~~~~~~l~~~v~~~~~~  256 (356)
                      |.||++||+++||+++|+++++|+++|||+||+ ++||+||++++.+             .++...++++.+.+++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            689999999999999999999999999999999 9999999987632             13455678999999999999


Q ss_pred             HHhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHH
Q 018433          257 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERI  334 (356)
Q Consensus       257 ii~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  334 (356)
                      |++   +||++.|++|.++++++++|+.+.+   .+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|++
T Consensus        80 i~~---~kg~t~~~~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~i~~s~P~~lg~~Gv~~i~~l-~L~~~E~~  152 (170)
T d1llda2          80 IIN---GKGATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELA  152 (170)
T ss_dssp             HHT---SCCSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHH
T ss_pred             HHh---hhccchhhhHHHHHHHHHHHHcCCC---ceeeeeccccCccCCCCeeEeeccEEcCCeeEEEecC-CCCHHHHH
Confidence            998   5689999999999999999999865   467776 778998 77999999999999999999995 99999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018433          335 GLEKAKKELAGSIQK  349 (356)
Q Consensus       335 ~L~~sa~~l~~~~~~  349 (356)
                      +|++|++.||+.+++
T Consensus       153 ~l~~sa~~lk~~~~~  167 (170)
T d1llda2         153 ALKRSAETLKETAAQ  167 (170)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988754

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.97  E-value=7.8e-31  Score=227.50  Aligned_cols=158  Identities=18%  Similarity=0.328  Sum_probs=142.8

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHh
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVE  259 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~  259 (356)
                      |.||++||+.+||+++|++|++|+++|||+||+ ++||+||++++.+          .+..++++++.+.++.+++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            689999999999999999999999999999998 9999999998743          25566788899999999999988


Q ss_pred             hhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 018433          260 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  337 (356)
Q Consensus       260 ~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~  337 (356)
                         ++|++.|++|.++++++++++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        80 ---~k~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~S~Pv~lg~~Gv~~v~~l-~Ls~~E~~~l~  152 (171)
T d1ez4a2          80 ---LKGATFYGIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQ  152 (171)
T ss_dssp             ---HHSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ---hhhhHhHHHHHHHHHHHHHHhccCC---ceEEEEEeeccccCccceeeeEEEEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence               4589999999999999999999865   477775 789998 78999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhhhhc
Q 018433          338 KAKKELAGSIQKGISFSK  355 (356)
Q Consensus       338 ~sa~~l~~~~~~~~~~~~  355 (356)
                      +|++.|+++++++++.+.
T Consensus       153 ~s~~~l~~~i~~~l~~l~  170 (171)
T d1ez4a2         153 DSAATLKKVLNDGLAELE  170 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999987653

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=9.8e-31  Score=228.77  Aligned_cols=161  Identities=22%  Similarity=0.264  Sum_probs=139.4

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEE-ecccCcccccccccCCCCC-C----------CCHHHHHHHHHHHhcchhHH
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVV-GGHAGVTILPLLSQVKPPC-S----------FTQEETEYLTNRIQNGGTEV  257 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~vi-G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i  257 (356)
                      |.||++|||+++|++|||+|++|+++|+ |+||+ ++||+||++++.+ +          ......+++.+.++++++.|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            6899999999999999999999987655 99999 9999999999743 1          22234568889999999999


Q ss_pred             HhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCceEEeccCCCCCHHHH
Q 018433          258 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQLGPLNEYER  333 (356)
Q Consensus       258 i~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g-~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~  333 (356)
                      ++.+  ++++.||+|.|+++++++|+++.++.. +++++ +.+| +|  ++++|||+||++|++|++++.++ +|+++|+
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~i~~~~~~~~-~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l-~L~~~E~  155 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRDIWFGTPEGE-FVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSR  155 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCC-CCCHHHH
T ss_pred             hhcc--CcchHHHHHHHHHHHHHHHHhhcccCC-ceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCC-CCCHHHH
Confidence            9875  467889999999999999999887543 55554 5676 67  68999999999999999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhc
Q 018433          334 IGLEKAKKELAGSIQKGISFSK  355 (356)
Q Consensus       334 ~~L~~sa~~l~~~~~~~~~~~~  355 (356)
                      ++|++|++.|+++++.++++++
T Consensus       156 ~~l~~Sa~~L~~~~~~~~~~l~  177 (179)
T d5mdha2         156 EKMDLTAKELAEEKETAFEFLS  177 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999876

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=1.8e-30  Score=228.41  Aligned_cols=161  Identities=17%  Similarity=0.145  Sum_probs=136.4

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcc-cEEecccCcccccccccCCCCC-----CCCHHH--HHHHHHHHhcchhHHHhhh
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-----SFTQEE--TEYLTNRIQNGGTEVVEAK  261 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~-~viG~hg~~~~vp~~s~~~v~~-----~~~~~~--~~~l~~~v~~~~~~ii~~~  261 (356)
                      |.||++||+++||+++||+|++|+. +|||+||+ ++||+||++++.+     ...++.  .+++.+.++++++++++.+
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            6899999999999999999999964 58899999 9999999999753     133333  4789999999999999975


Q ss_pred             ccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCC-C--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 018433          262 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  337 (356)
Q Consensus       262 ~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~-~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~  337 (356)
                        ++++++|+|.|+++++++|+++++.. .+++++ +++|+ |  ++|+|||+||+||++|+++++...+|+++|+++|+
T Consensus        80 --g~s~~~s~A~A~~~~~~ai~~~~~~~-~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~  156 (188)
T d7mdha2          80 --GRSSAASTAVSIADAIKSLVTPTPEG-DWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIK  156 (188)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHSCCCTT-CCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHHHHHHHHcCCCCC-ceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHH
Confidence              34566789999999999999998654 356665 67885 8  57999999999999999999864599999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 018433          338 KAKKELAGSIQKGISFS  354 (356)
Q Consensus       338 ~sa~~l~~~~~~~~~~~  354 (356)
                      +|+++|+++.+....++
T Consensus       157 ~S~~eL~~e~~~v~~Ll  173 (188)
T d7mdha2         157 KSEAELLAEKKCVAHLT  173 (188)
T ss_dssp             HHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999887765444

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=2.9e-30  Score=224.61  Aligned_cols=155  Identities=27%  Similarity=0.431  Sum_probs=135.0

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHh
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVE  259 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~  259 (356)
                      |+||++||+++||+++|++|++|+++||||||+ ++||+||++++.+          .....++.+.....+.++..++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            899999999999999999999999999999999 9999999998743          13344556666667777878877


Q ss_pred             hhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 018433          260 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  337 (356)
Q Consensus       260 ~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~  337 (356)
                      .+ ++|++.|++|.++++++++|+.+.+   .+++++ +.+|+| .+++|||+||+||++|+++++++ +|+++|+++|+
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~~~---~~~~~s~~~~~~yGi~~v~~s~Pv~ig~~Gi~~v~~l-~l~~~E~~~l~  155 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQ  155 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ee-cccchhhhhHHHHHHHHHhhcccCC---ceEEeeeccccccCCCCceeeeeeEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            65 7899999999999999999999865   478887 678999 56899999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHh
Q 018433          338 KAKKELAGSIQKG  350 (356)
Q Consensus       338 ~sa~~l~~~~~~~  350 (356)
                      +|++.|+++.+..
T Consensus       156 ~s~~~l~~~~~~v  168 (174)
T d1pzga2         156 KSVDDVMALNKAV  168 (174)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=1e-30  Score=220.28  Aligned_cols=136  Identities=29%  Similarity=0.528  Sum_probs=111.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +||+|||+ |+||+++|+.|+.+++. |++|+|+++  +++.++|+.|...  ....+.. +++|+ ++++|||+||+++
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~-~~~d~-~~~~~advvvita   77 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT-GTNNY-ADTANSDVIVVTS   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE-EESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEE-ecCcH-HHhcCCCEEEEee
Confidence            59999998 99999999999988875 899999988  7899999999852  1222222 24675 6799999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      |.|+++|++|.+++..|++++++++++|.++||+++++++|||+|++|+++    ++.+|||++||||
T Consensus        78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~----~~~sglp~~rViG  141 (142)
T d1uxja1          78 GAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIG  141 (142)
T ss_dssp             SCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             eccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999998865    6778999999998

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=2.3e-30  Score=225.34  Aligned_cols=144  Identities=22%  Similarity=0.306  Sum_probs=124.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG  112 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  112 (356)
                      +++.||+|+||+|+||+++++.|++++++     .+|+|+|++.    ++|.++|+.|+.+.. ++....+++.+++++|
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~-~~~~~~~~~~~~~~~~  100 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-LREVSIGIDPYEVFED  100 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccccc-ccCccccccchhhccC
Confidence            45679999999899999999999987654     3899999977    578899999997533 3332234566799999


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      ||+||+++|.||++||+|.|++..|.+++++++++|.+||| +++|+++|||+|++|+++   .++++++|++||+||
T Consensus       101 aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         101 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHAL  175 (175)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             CceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999997 899999999999999875   244799999999986

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.97  E-value=9.8e-31  Score=226.65  Aligned_cols=154  Identities=19%  Similarity=0.329  Sum_probs=135.9

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----C--------CCHHHHHHHHHHHhcchhHH
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S--------FTQEETEYLTNRIQNGGTEV  257 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~--------~~~~~~~~l~~~v~~~~~~i  257 (356)
                      |.||++||+++||+++|++|++|+++|||+||+ +++|+||++++++    +        ++.++++++.+++++.++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            689999999999999999999999999999999 9999999988642    1        22334678899999999998


Q ss_pred             HhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHH
Q 018433          258 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIG  335 (356)
Q Consensus       258 i~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~  335 (356)
                      ++   +++++.|++|.++++++++++.+.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++
T Consensus        80 ~~---~~~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~g~yg~~~i~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~  152 (169)
T d1y6ja2          80 IK---NKGATYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEA  152 (169)
T ss_dssp             HH---HTSCCCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHH
T ss_pred             hh---hhhhhhhHHHHHHHHHHHHhccCCC---CceeeeeeeccccCCcccceeeeeEEcCCcEEEEecC-CCCHHHHHH
Confidence            88   4689999999999999999999865   488886 789999 56999999999999999999996 999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 018433          336 LEKAKKELAGSIQKGI  351 (356)
Q Consensus       336 L~~sa~~l~~~~~~~~  351 (356)
                      |++|++.|++++++..
T Consensus       153 l~~s~~~lk~~~~~vk  168 (169)
T d1y6ja2         153 LRFSAEQVKKVLNEVK  168 (169)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998753

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=4.7e-30  Score=222.77  Aligned_cols=156  Identities=24%  Similarity=0.365  Sum_probs=139.2

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----------CCCHHHHHHHHHHHhcchhHHH
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVV  258 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~ii  258 (356)
                      |.||++||+++||+++|++|.+|+++|||+||+ +++|+||++++..           .+..+.++++.+.++..+++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            689999999999999999999999999999999 9999999998642           2556667889999999999998


Q ss_pred             hhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 018433          259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL  336 (356)
Q Consensus       259 ~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L  336 (356)
                      +.   ++++.|++|.++++++.+++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        81 ~~---~~~~~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~v~~s~P~~lg~~Gv~~v~~l-~Ls~~E~~~l  153 (172)
T d1a5za2          81 ER---KGATHYAIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAF  153 (172)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             ec---cccchhhHHHHHHHHHHHHHhhcc---cceeeecccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHH
Confidence            84   578999999999999999998864   466766 678888 67999999999999999999996 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 018433          337 EKAKKELAGSIQKGISF  353 (356)
Q Consensus       337 ~~sa~~l~~~~~~~~~~  353 (356)
                      ++|++.||+.+++..+.
T Consensus       154 ~~sa~~lk~~i~~l~~~  170 (172)
T d1a5za2         154 RKSASILKNAINEITAE  170 (172)
T ss_dssp             HHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999886544

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=7.2e-30  Score=220.33  Aligned_cols=151  Identities=26%  Similarity=0.384  Sum_probs=136.1

Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----------CCCHHHHHHHHHHHhcchhHHHhh
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEA  260 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~ii~~  260 (356)
                      .||++||++++|+++|++|++|+++|||+||+ +++|+||++++..          ...+++++++.+.++++++++++ 
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   79 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVN-   79 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHH-
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhh-
Confidence            68999999999999999999999999999999 9999999987632          34566778899999999999988 


Q ss_pred             hccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 018433          261 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  338 (356)
Q Consensus       261 ~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~  338 (356)
                        +++++.|++|.+++.++++++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++
T Consensus        80 --~~~~~~~a~a~a~~~~~~~i~~~~~---~~~~~~v~~~g~yg~~~v~~s~Pv~lg~~Gv~~i~~l-~L~~~E~~~L~~  153 (165)
T d1t2da2          80 --LHASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  153 (165)
T ss_dssp             --HTSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             --hccceeechhHHHHHHHHHHhhccc---cceeeeeccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHHHH
Confidence              5688999999999999999999875   477776 789999 77999999999999999999996 999999999999


Q ss_pred             HHHHHHHHHHH
Q 018433          339 AKKELAGSIQK  349 (356)
Q Consensus       339 sa~~l~~~~~~  349 (356)
                      |++.|++..+.
T Consensus       154 s~~~lk~~~~~  164 (165)
T d1t2da2         154 AIAETKRMKAL  164 (165)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999988764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=3.5e-30  Score=219.93  Aligned_cols=143  Identities=22%  Similarity=0.352  Sum_probs=119.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG  112 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~-----~el~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  112 (356)
                      ++||||+||||+|+||+++++.|+.++++     .+|+|+|+++    +++..+|+.++......... .+++.+++++|
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~   79 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVI-ATDKEEIAFKD   79 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEE-EESCHHHHTTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccc-cCcccccccCC
Confidence            47899999998899999999999877653     4899999987    45566677777543322222 23566799999


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEecCCCCccHHHHHHHHHHhC-CCCCCCEEEe
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  189 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-a~viv~tNPv~~~t~~~~~~~~~~~-~~~~~kviG~  189 (356)
                      ||+||+++|.|+++|++|.|++..|.++++++++.|.++||+ +++|++|||+|++|+++    ++.+ |||++||+||
T Consensus        80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~----~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCL  154 (154)
T ss_dssp             CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHH----HHHcCCCCHHHEeCC
Confidence            999999999999999999999999999999999999999985 57889999999998765    6656 9999999986

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.3e-29  Score=216.28  Aligned_cols=143  Identities=26%  Similarity=0.460  Sum_probs=120.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEeCCC----chhHHHHHhcCCCCCeEEEEeCCCChhhhhCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG  112 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~e-----l~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~  112 (356)
                      ++||||+||||+|+||+++++.|++++++++     +.|+|.+.    +.+.++|+.++.. +..+.+..+++.+++++|
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-ccccccccCCchhhhccc
Confidence            3689999999889999999999999887653     56666654    5677888888864 333322223455799999


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      ||+||+++|.|+++|++|.+++..|+++++++++.|.++|| +++++++|||+|++|+++   +++++|||++|||.
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg~p~~rvia  154 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTA  154 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCCCcHHhccC
Confidence            99999999999999999999999999999999999999995 899999999999999875   24569999999985

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.96  E-value=3e-29  Score=214.85  Aligned_cols=155  Identities=25%  Similarity=0.379  Sum_probs=137.9

Q ss_pred             EEechhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC---CCCHHHHHHHHHHHhcchhHHHhhhcc
Q 018433          187 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC---SFTQEETEYLTNRIQNGGTEVVEAKAG  263 (356)
Q Consensus       187 iG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~---~~~~~~~~~l~~~v~~~~~~ii~~~~g  263 (356)
                      || |+||++||+++||+++|+++++|+++|||+||+ +++|+||++++..   ....++++++.+.++..+.++++   +
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~   75 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---R   75 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHH---h
Confidence            46 899999999999999999999999999999999 9999999998642   35667788888899999999877   5


Q ss_pred             CCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHH
Q 018433          264 AGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKK  341 (356)
Q Consensus       264 kg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~  341 (356)
                      ++++.+++|.++++++.+++.+.+.   +++++ +++|+| +++++||+||++|++|+++++++ +|+++|+++|++|++
T Consensus        76 ~~~s~~~~a~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~S~Pv~ig~~Gv~~v~~l-~l~~~E~~~L~~s~~  151 (161)
T d1o6za2          76 KGATEWGPARGVAHMVEAILHDTGE---VLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAE  151 (161)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHTTCCC---EEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhhHhhhHhhhhcccc---ceeecccccccccccCceeeeeeEEcCCCEEEEeCC-CCCHHHHHHHHHHHH
Confidence            6889999999999999999988653   55665 678888 78999999999999999999995 999999999999999


Q ss_pred             HHHHHHHHh
Q 018433          342 ELAGSIQKG  350 (356)
Q Consensus       342 ~l~~~~~~~  350 (356)
                      .|++++++.
T Consensus       152 ~L~~~~~~i  160 (161)
T d1o6za2         152 KLSDQYDKI  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998763

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=8.4e-30  Score=220.30  Aligned_cols=155  Identities=19%  Similarity=0.342  Sum_probs=129.6

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCCC----C---CHHHHHHHHHHHhcchhHHHhhhc
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----F---TQEETEYLTNRIQNGGTEVVEAKA  262 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~----~---~~~~~~~l~~~v~~~~~~ii~~~~  262 (356)
                      |.||++||++++|++||+++++|+++|||+||+ +++|+||++++.+.    +   ....++++.+.++++++.+++   
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   78 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---   78 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHH---
Confidence            789999999999999999999999999999999 99999999987431    1   122357788888888888877   


Q ss_pred             cCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 018433          263 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA  339 (356)
Q Consensus       263 gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~s  339 (356)
                      .++++.|++|.+++.++++++++.+   .+++++ ++.|+|  ++|+|||+||++|++|+++++++ +|+++|+++|++|
T Consensus        79 ~k~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~l~~S  154 (168)
T d1hyea2          79 LKGGSEFGPAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKS  154 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             hccCccccchhhhhHHHHhhhccCC---CeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEecC-CCCHHHHHHHHHH
Confidence            4577889999999999999999865   355554 677775  78999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 018433          340 KKELAGSIQKGIS  352 (356)
Q Consensus       340 a~~l~~~~~~~~~  352 (356)
                      ++.|++.+++..+
T Consensus       155 a~~lk~~~~~~k~  167 (168)
T d1hyea2         155 AEIIKKYCEEVKN  167 (168)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988765

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.96  E-value=3.6e-29  Score=215.30  Aligned_cols=154  Identities=19%  Similarity=0.255  Sum_probs=133.5

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----C-C--CHHHHHHHHHHHhcchhHHHhhhc
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-F--TQEETEYLTNRIQNGGTEVVEAKA  262 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~-~--~~~~~~~l~~~v~~~~~~ii~~~~  262 (356)
                      |.||++||++++|+++|++|++|+++|||+||+ ++||+||++++++    . .  .+..++++.+.++++++++++.  
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~--   78 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG--   78 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHH--
Confidence            689999999999999999999999999999999 9999999998753    1 1  1234689999999999999984  


Q ss_pred             cCCcccchHHHHHHHHHHHHHcCCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHH
Q 018433          263 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE  342 (356)
Q Consensus       263 gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~~~~g~~~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~  342 (356)
                       ||++.|++|.++.+++.++..+.+   .+++++.+.+  ++++|||+||++|++|+++++++ +|+++|+++|++|++.
T Consensus        79 -kg~~~~~~a~~~~~~~~~~~~~~~---~~~~~s~~~~--~~~~~~s~Pv~ig~~Gv~~v~~l-~Ls~~E~~~l~~s~~~  151 (163)
T d1hyha2          79 -KGYTSYGVATSAIRIAKAVMADAH---AELVVSNRRD--DMGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDY  151 (163)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECT--TTCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHH
T ss_pred             -HHhHHHhHHHHhhHHHHHhcCCcc---ceeeeceecC--CcceEEEeEEEEcCCeEEEEecC-CCCHHHHHHHHHHHHH
Confidence             588999999999999999999865   3666653222  35799999999999999999996 9999999999999999


Q ss_pred             HHHHHHHhhhh
Q 018433          343 LAGSIQKGISF  353 (356)
Q Consensus       343 l~~~~~~~~~~  353 (356)
                      |+++++++++.
T Consensus       152 l~~~~~~~~~~  162 (163)
T d1hyha2         152 IQQRFDEIVDT  162 (163)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=218.73  Aligned_cols=152  Identities=18%  Similarity=0.255  Sum_probs=134.2

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC------------CCCHHHHHHHHHHHhcchhHH
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEV  257 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i  257 (356)
                      |.||++||+++||+++|+++++|+++|||+||+ +++|+||+++++.            ....+.++++.+.++.++.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            789999999999999999999999999999999 9999999998742            122334678888999999999


Q ss_pred             HhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHH
Q 018433          258 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERI  334 (356)
Q Consensus       258 i~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  334 (356)
                      ++.   ++++.|++|.++++++++++.+.+   .++|++ +++|+|  ++++|||+||++|++|+++++++ +|+++|++
T Consensus        82 ~~~---~~~s~~a~a~~~~~~~~~~~~~~~---~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~  154 (172)
T d1i0za2          82 IKL---KGYTNWAIGLSVADLIESMLKNLS---RIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVA  154 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHH
T ss_pred             eec---ccccchHHHHHHHHHHHHHhcCCC---cccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCC-CCCHHHHH
Confidence            884   578999999999999999999854   488887 679998  66999999999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018433          335 GLEKAKKELAGSIQK  349 (356)
Q Consensus       335 ~L~~sa~~l~~~~~~  349 (356)
                      +|++|++.|++..+.
T Consensus       155 ~l~~Sa~~l~~~~~~  169 (172)
T d1i0za2         155 QLKKSADTLWDIQKD  169 (172)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999976643

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=2.9e-29  Score=216.61  Aligned_cols=154  Identities=18%  Similarity=0.352  Sum_probs=134.8

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC----C-------CCHHHHHHHHHHHhcchhHHH
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-------FTQEETEYLTNRIQNGGTEVV  258 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~----~-------~~~~~~~~l~~~v~~~~~~ii  258 (356)
                      |.||++||+.+||++||+++++|+++|||+||+ +++|+||++++++    .       ......+++.+.++..++.++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            689999999999999999999999999999999 9999999998642    1       112335678888888888887


Q ss_pred             hhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 018433          259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL  336 (356)
Q Consensus       259 ~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L  336 (356)
                      ..   ++++.|+++.++.+++.+++.+.+   .+++++ +++++| ++++|||+||++|++|+++++++ +|+++|+++|
T Consensus        80 ~~---~~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~yg~~~v~~s~Pv~lg~~Gv~~v~~l-~Ls~~E~~~L  152 (168)
T d1ldna2          80 EK---KGATYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRF  152 (168)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             Hh---hccccchHHHHHhhHHHhhhcccc---eeeeeeeeeccccCCCCeeecceEEEcCCeEEEEeCC-CCCHHHHHHH
Confidence            74   478999999999999999998864   477776 678888 78999999999999999999996 9999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 018433          337 EKAKKELAGSIQKGI  351 (356)
Q Consensus       337 ~~sa~~l~~~~~~~~  351 (356)
                      ++|++.||+.+++|.
T Consensus       153 ~~s~~~lk~~i~~a~  167 (168)
T d1ldna2         153 HHSAATLKSVLARAF  167 (168)
T ss_dssp             HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999875

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.96  E-value=6.7e-29  Score=214.64  Aligned_cols=155  Identities=20%  Similarity=0.295  Sum_probs=130.7

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCCC---------CCHHHHHHHHHHHhcchhHHHhh
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS---------FTQEETEYLTNRIQNGGTEVVEA  260 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~---------~~~~~~~~l~~~v~~~~~~ii~~  260 (356)
                      |.||++||+++||++||+++++|+++|||+||+ +++|+||++++...         .....+.++..+++.++.++.. 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIK-   80 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEec-
Confidence            789999999999999999999999999999999 89999999987421         1222334555666667777766 


Q ss_pred             hccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 018433          261 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  337 (356)
Q Consensus       261 ~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~  337 (356)
                        +++++.|++|.++++++.+++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        81 --~~~s~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~~l~  154 (169)
T d1ldma2          81 --LKGYTSWAIGLSVADLAETIMKNLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQ  154 (169)
T ss_dssp             --HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHhhhhheecCCCC---ceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecC-CCCHHHHHHHH
Confidence              4578999999999999999999865   477776 679998  57999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 018433          338 KAKKELAGSIQKGISF  353 (356)
Q Consensus       338 ~sa~~l~~~~~~~~~~  353 (356)
                      +|++.|+ ++.+.++|
T Consensus       155 ~s~~~l~-~~~k~lkf  169 (169)
T d1ldma2         155 KSATTLW-DIQKDLKF  169 (169)
T ss_dssp             HHHHHHH-HHHHTCCC
T ss_pred             HHHHHHH-HHHHhcCC
Confidence            9999998 45566654

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.95  E-value=2.7e-30  Score=224.40  Aligned_cols=156  Identities=19%  Similarity=0.352  Sum_probs=136.7

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-----------CCCHHHHHHHHHHHhcchhHHH
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVV  258 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~ii  258 (356)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++.+           .+..+.++++.+.+++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            689999999999999999999999999999999 9999999987632           1222234677778888899988


Q ss_pred             hhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 018433          259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL  336 (356)
Q Consensus       259 ~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~-~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L  336 (356)
                      +   ++|++.|++|.++++++.+++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        80 ~---~kg~~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~lg~~Gv~~i~~l-~L~~~E~~~l  152 (172)
T d1llca2          80 K---LKGATFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESM  152 (172)
T ss_dssp             S---SSSCTTHHHHHHHHHHHHHHHHTCC---CCEECCCCCSSSSSCCSSCCBCEEEEETTEEEEECCC-CCTTHHHHHH
T ss_pred             H---hhhhhhhhhHHHHHHHHHHHhcCCC---CccceeeeecCccCcccceEEEEEEEcCCceEEEecC-CCCHHHHHHH
Confidence            7   6789999999999999999999875   367776 789999 67899999999999999999995 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 018433          337 EKAKKELAGSIQKGISF  353 (356)
Q Consensus       337 ~~sa~~l~~~~~~~~~~  353 (356)
                      ++|++.||+.++++++-
T Consensus       153 ~~s~~~lk~~i~~~~~~  169 (172)
T d1llca2         153 QKSASQLKKVLTDAFAK  169 (172)
T ss_dssp             HTTTTTTTTTTTTTCCC
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999988887654

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7.9e-28  Score=208.20  Aligned_cols=153  Identities=22%  Similarity=0.346  Sum_probs=130.5

Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEecccCcccccccccCCCCC-C-----------CCHHHHHHHHHHHhcchhHH
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S-----------FTQEETEYLTNRIQNGGTEV  257 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i  257 (356)
                      |.||++|+++++|+++|++|++|+++|||+||+ +++|+||+++++. +           ......+++...++..+..+
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            789999999999999999999999999999999 8999999998742 1           11223467777788888888


Q ss_pred             HhhhccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHH
Q 018433          258 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERI  334 (356)
Q Consensus       258 i~~~~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  334 (356)
                      +..   ++++.|++|.++++++.+++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|++
T Consensus        82 ~~~---k~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l-~L~~~E~~  154 (172)
T d2ldxa2          82 LDM---KGYTSWAIGLSVTDLARSILKNLK---RVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKV-NMTAEEEG  154 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECC-CCCHHHHH
T ss_pred             hhc---ccchhHHHHHHHhHHHHhhcCCCc---cceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecC-CCCHHHHH
Confidence            773   578999999999999999998764   477776 678998  67999999999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 018433          335 GLEKAKKELAGSIQKGI  351 (356)
Q Consensus       335 ~L~~sa~~l~~~~~~~~  351 (356)
                      +|++|++.||+. .+.+
T Consensus       155 ~l~~s~~~lk~~-~k~l  170 (172)
T d2ldxa2         155 LLKKSADTLWNM-QKNL  170 (172)
T ss_dssp             HHHHHHHHHHHH-TSCS
T ss_pred             HHHHHHHHHHHH-HHhc
Confidence            999999999854 3443

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=2.3e-27  Score=205.83  Aligned_cols=159  Identities=21%  Similarity=0.219  Sum_probs=128.9

Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCccc-EEecccCcccccccccCCCCC----CC-CHH-HHHHHHHHHhcchhHHHhhh
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPC----SF-TQE-ETEYLTNRIQNGGTEVVEAK  261 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~~~-viG~hg~~~~vp~~s~~~v~~----~~-~~~-~~~~l~~~v~~~~~~ii~~~  261 (356)
                      +|.||++||+++||+++|++|++|+++ |||+||+ +++|+||++++.+    ++ .+. ...+..++....++.++.. 
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQA-   78 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHH-
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHH-
Confidence            588999999999999999999999886 5699999 9999999999753    12 222 2234444445555666654 


Q ss_pred             ccCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 018433          262 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  338 (356)
Q Consensus       262 ~gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~  338 (356)
                       .++++.|++|.++++++++|+.+.+.. .++|++ +++|+|  ++++++|+||+++++|++.+.++ +|+++|+++|++
T Consensus        79 -~~~~s~~~~a~a~~~~~~~~~~~~~~~-~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l-~L~~~E~~~l~~  155 (173)
T d1y7ta2          79 -RGASSAASAANAAIEHIRDWALGTPEG-DWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEI  155 (173)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHHTBCCTT-CCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCC-CCCHHHHHHHHH
T ss_pred             -hccCchhhHHHHHHHHHHHHhcccCCC-CceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCC-CCCHHHHHHHHH
Confidence             357788999999999999999987643 588887 679998  78999999999987777666665 999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 018433          339 AKKELAGSIQKGIS  352 (356)
Q Consensus       339 sa~~l~~~~~~~~~  352 (356)
                      |+++|+++++....
T Consensus       156 s~~~L~~~~e~vk~  169 (173)
T d1y7ta2         156 TAQELLDEMEQVKA  169 (173)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999986643

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.94  E-value=1.9e-26  Score=199.54  Aligned_cols=158  Identities=15%  Similarity=0.126  Sum_probs=122.6

Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCcc-cEEecccCcccccccccCCCCCC-----CCHH--HHHHHHHHHhcchhHHHhhhc
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPCS-----FTQE--ETEYLTNRIQNGGTEVVEAKA  262 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~~-~viG~hg~~~~vp~~s~~~v~~~-----~~~~--~~~~l~~~v~~~~~~ii~~~~  262 (356)
                      .||++||+++||+++|++|++|+. +|||+||+ +++|+||++++...     ..+.  ..+++.+.++.++..+...+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            589999999999999999999976 67799999 99999999997531     1111  23455666666777777655 


Q ss_pred             cCCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 018433          263 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA  339 (356)
Q Consensus       263 gkg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~--~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~s  339 (356)
                      +++++.++.+.++..+..++..+.+   .+++++ +++|+|  ++++|||+||++|++|++.+.++ +|+++|+++|++|
T Consensus        80 ~~~~~~~~~~a~~~~~~~~i~~~~~---~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l-~L~~~e~~~l~~s  155 (171)
T d1b8pa2          80 GVSSAASAANAAIDHIHDWVLGTAG---KWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVT  155 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHCCTT---CCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCC-CCCHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHhCCCc---cceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHH
Confidence            4545545554555555555554433   367776 678998  78999999999999999999996 8999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 018433          340 KKELAGSIQKGISFS  354 (356)
Q Consensus       340 a~~l~~~~~~~~~~~  354 (356)
                      +++|+++++.....+
T Consensus       156 ~~~L~~e~~~v~~ll  170 (171)
T d1b8pa2         156 LNELLEEQNGVQHLL  170 (171)
T ss_dssp             HHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998877654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=5.6e-27  Score=202.85  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=110.3

Q ss_pred             CCeEEEEcCCCchHHHHH--HHHHhCCC--CcEEEEEeCCC--chhHHHHHhcCC----CCCeEEEEeCCCChhhhhCCC
Q 018433           44 GFKVAILGAAGGIGQPLA--MLMKINPL--VSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGM  113 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a--~~l~~~~~--~~el~L~D~~~--~~g~~~dl~~~~----~~~~v~~~~~t~d~~~al~~a  113 (356)
                      +|||+|||| |++|.+.+  ..+.....  ..||+|+|+++  .++.++|+.+..    ....++... ++|++++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~-~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL-TLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee-cCCchhhcCCC
Confidence            479999999 98886543  34444332  47999999988  578888887642    123344432 47888999999


Q ss_pred             cEEEEcCCCCCCCCCcHHHH--------------------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH
Q 018433          114 DLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  173 (356)
Q Consensus       114 DiVIi~ag~~~~~g~~r~~~--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~  173 (356)
                      |+||+++|.++++|++|+++                    +.+|++++++++++|+++|||+|+|++|||+|++|+++  
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~--  156 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV--  156 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH--
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHH--
Confidence            99999999988777666555                    57999999999999999999999999999999998754  


Q ss_pred             HHHHhCCCCCCCEEEec
Q 018433          174 VFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       174 ~~~~~~~~~~~kviG~t  190 (356)
                        ++.  +|++||||+|
T Consensus       157 --~k~--~p~~kviGlC  169 (169)
T d1s6ya1         157 --LRY--TKQEKVVGLC  169 (169)
T ss_dssp             --HHH--CCCCCEEECC
T ss_pred             --HHH--CCCCCEEeeC
Confidence              565  5789999998

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=5.6e-26  Score=195.84  Aligned_cols=138  Identities=19%  Similarity=0.197  Sum_probs=108.6

Q ss_pred             CCCeEEEEcCCCchHHHHHH-HHHh-CC--CCcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEeCCCChhhhhCCCc
Q 018433           43 AGFKVAILGAAGGIGQPLAM-LMKI-NP--LVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMD  114 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~-~l~~-~~--~~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aD  114 (356)
                      +..||+|||| |++|...+. .++. ..  ..+||+|+|+++  +++.+.++.+..  .....+... ++|+++|++|||
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~eal~~AD   79 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA-TTDPEEAFTDVD   79 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE-ESCHHHHHSSCS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe-cCChhhccCCCC
Confidence            5679999999 999987653 3332 22  247999999998  566666666542  122333322 468899999999


Q ss_pred             EEEEcCCCCCCCCCcHHHHH--------------------HHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 018433          115 LVIIPAGVPRKPGMTRDDLF--------------------NINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  174 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r~~~~--------------------~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~  174 (356)
                      +||+++|.++++|++|.+++                    .+|+++++++++.|+++||+||+|++|||+|++|+++   
T Consensus        80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~---  156 (167)
T d1u8xx1          80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT---  156 (167)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH---
T ss_pred             EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH---
Confidence            99999999999999888775                    4779999999999999999999999999999998764   


Q ss_pred             HHHhCCCCCCCEEE
Q 018433          175 FKKAGTYDPKKLLG  188 (356)
Q Consensus       175 ~~~~~~~~~~kviG  188 (356)
                       ++.  +|++|||.
T Consensus       157 -~k~--~P~~rVI~  167 (167)
T d1u8xx1         157 -RRL--RPNSKILN  167 (167)
T ss_dssp             -HHH--STTCCEEE
T ss_pred             -HHH--CCcccccC
Confidence             565  68999973

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.7e-26  Score=198.42  Aligned_cols=137  Identities=16%  Similarity=0.225  Sum_probs=104.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh--C--CCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKI--N--PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~--~--~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      |||+|||| |++|.+.++..+.  .  ...+||+|+|+++ ..+.+.|+.+........... +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            79999999 9999998865332  2  2367999999988 334566776653322233332 45678999999999999


Q ss_pred             CCCCCCCCCcHHHH--------------------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          120 AGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       120 ag~~~~~g~~r~~~--------------------~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      +|.+++++++|+++                    ..++++.+.++.+ +.++||++|+|++|||+|++|+++    ++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~----~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFV----RNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHH----HHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHH----HHh-
Confidence            99988877776654                    4567778877765 778899999999999999998654    665 


Q ss_pred             CCCCCCEEEec
Q 018433          180 TYDPKKLLGVT  190 (356)
Q Consensus       180 ~~~~~kviG~t  190 (356)
                       +|++||+|+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5789999998

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.1e-24  Score=188.51  Aligned_cols=137  Identities=20%  Similarity=0.183  Sum_probs=106.4

Q ss_pred             CCCeEEEEcCCCchHHHHHH--HHHhC-CC-CcEEEEEeCCC--chhHHHHHhcCC--CCCeEEEEeCCCChhhhhCCCc
Q 018433           43 AGFKVAILGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMD  114 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~--~l~~~-~~-~~el~L~D~~~--~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al~~aD  114 (356)
                      ++|||+|||| |++|++.+.  .++.. .+ .+||+|+|+++  +++.+.|+.|..  .....+.. .++|++++++|||
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~-~~td~~eaL~dad   78 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFE-KTMNLDDVIIDAD   78 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEE-EESCHHHHHTTCS
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEE-EeCChhhcccCCC
Confidence            5799999999 999988654  34433 32 46999999998  677888888753  22334433 2578999999999


Q ss_pred             EEEEcCCC------------------CCCCCCcHHHH--------HHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 018433          115 LVIIPAGV------------------PRKPGMTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  168 (356)
Q Consensus       115 iVIi~ag~------------------~~~~g~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t  168 (356)
                      +||++++.                  +++++++|.+.        +.+|+++++++++.|+++||++|+|++|||+|++|
T Consensus        79 ~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv~t  158 (171)
T d1obba1          79 FVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGT  158 (171)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHH
T ss_pred             eEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHHHH
Confidence            99997654                  44556666553        57999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhCCCCCCCEEE
Q 018433          169 PIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~kviG  188 (356)
                      +++    ++.+++   |+||
T Consensus       159 ~~~----~k~~~~---k~iG  171 (171)
T d1obba1         159 TLV----TRTVPI---KAVG  171 (171)
T ss_dssp             HHH----HHHSCS---EEEE
T ss_pred             HHH----HHhcCC---CccC
Confidence            654    676654   8887

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=8.1e-09  Score=89.24  Aligned_cols=119  Identities=14%  Similarity=0.205  Sum_probs=83.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--H-H---HHhcCCC--------------CCeEEEEe
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T-A---DISHMDT--------------GAVVRGFL  101 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~--~-~---dl~~~~~--------------~~~v~~~~  101 (356)
                      .||+|||| |.+|+.+|..++..|+  +++|+|+++ .  .+.  . .   .+.....              ...+..  
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~--   79 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT--   79 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE--
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc--
Confidence            49999999 9999999999999999  999999987 1  111  0 0   1111110              012443  


Q ss_pred             CCCChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          102 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       102 ~t~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                       ++|+.+++++||+|+.+.              .+|.++.+++...+.+++| ++  |+.||.......   +. .... 
T Consensus        80 -~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~---~l-a~~~-  137 (192)
T d1f0ya2          80 -STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHT--IFASNTSSLQIT---SI-ANAT-  137 (192)
T ss_dssp             -ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTC--EEEECCSSSCHH---HH-HTTS-
T ss_pred             -cchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCc--eeeccCcccccc---hh-hhhc-
Confidence             468889999999999985              4778889999999999995 65  447888766542   22 2222 


Q ss_pred             CCCCCEEEec
Q 018433          181 YDPKKLLGVT  190 (356)
Q Consensus       181 ~~~~kviG~t  190 (356)
                      -.|+|++|+.
T Consensus       138 ~~p~r~ig~H  147 (192)
T d1f0ya2         138 TRQDRFAGLH  147 (192)
T ss_dssp             SCGGGEEEEE
T ss_pred             cCHhHEEeec
Confidence            2367888873

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.68  E-value=2.5e-08  Score=85.63  Aligned_cols=119  Identities=19%  Similarity=0.219  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hh--HHH----HHhcC-CC--------CCeEEEEeCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTA----DISHM-DT--------GAVVRGFLGQPQ  105 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g--~~~----dl~~~-~~--------~~~v~~~~~t~d  105 (356)
                      -.||+|||| |.+|+.+|..++..|+  +++|+|+++ .  .+  ...    ++... ..        ...+..   +++
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~~   77 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TLS   77 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ESS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec---ccc
Confidence            358999999 9999999999999998  999999987 1  11  111    11111 10        112443   345


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 018433          106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      + +++.+||+||.+.              .+|.++.+++...|.+++| ++  |++||.......-+   . .... .|+
T Consensus        78 ~-~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~--IiaSnTS~l~i~~l---a-~~~~-~p~  135 (186)
T d1wdka3          78 Y-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDA--ILASNTSTISISLL---A-KALK-RPE  135 (186)
T ss_dssp             S-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTC--EEEECCSSSCHHHH---G-GGCS-CGG
T ss_pred             c-ccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCe--eEEeccccccHHHH---H-Hhcc-Cch
Confidence            4 6799999999985              4678889999999999995 66  34888877665322   2 2222 357


Q ss_pred             CEEEec
Q 018433          185 KLLGVT  190 (356)
Q Consensus       185 kviG~t  190 (356)
                      |++|+-
T Consensus       136 r~~g~H  141 (186)
T d1wdka3         136 NFVGMH  141 (186)
T ss_dssp             GEEEEE
T ss_pred             heEeec
Confidence            888864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.59  E-value=1.4e-07  Score=81.71  Aligned_cols=125  Identities=16%  Similarity=0.164  Sum_probs=78.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC----------------CCCCeEEEEeCCCChhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----------------DTGAVVRGFLGQPQLEN  108 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~----------------~~~~~v~~~~~t~d~~~  108 (356)
                      |||+|||+ |+||..+|..|+..|+  +|+.+|+++.  ....+...                .....+..   ++|+++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~--~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~   72 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSST--KIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHH--HHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHH
Confidence            89999999 9999999999999998  9999999861  11112211                01123343   468889


Q ss_pred             hhCCCcEEEEcCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHHHHHHHHHhCC
Q 018433          109 ALTGMDLVIIPAGVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~-tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ++++||+++++.+.|.... ......+   ..+...+...++...++..|++- |-|....-.+...++.+.++
T Consensus        73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~  143 (202)
T d1mv8a2          73 AVLDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSG  143 (202)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHS
T ss_pred             HHhhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhcccc
Confidence            9999999999998885432 2222222   23344444555545567666554 56766654443333434333

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.42  E-value=1.2e-06  Score=73.44  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcC--C-CCCeEEE--EeCCCChhhhhCCCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM--D-TGAVVRG--FLGQPQLENALTGMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~--~-~~~~v~~--~~~t~d~~~al~~aDiVIi  118 (356)
                      +||+|||| |.+|+.+|..|...|+  ++.++|+++. .....+....  . .......  ...++|.++++++||+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            59999999 9999999999999998  9999999761 1111111110  0 0011110  0113678899999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  163 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNP  163 (356)
                      +....                ...++++++..+- ++.+|+...|.
T Consensus        79 ~v~~~----------------~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          79 VVPAI----------------HHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             CSCGG----------------GHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEchh----------------HHHHHHHHhhhccCCCCEEEEeCCC
Confidence            85211                2456777777775 56665544444

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=7.7e-07  Score=79.76  Aligned_cols=80  Identities=10%  Similarity=-0.012  Sum_probs=61.2

Q ss_pred             CCcccchHHHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 018433          264 AGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA  339 (356)
Q Consensus       264 kg~t~~s~A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~s  339 (356)
                      ++...||  ..+++++++|.+|++   .++.++ .++|.+   |+|+++++||+|+++|+.++.. ++|++...+++..-
T Consensus       127 ~~~~~~~--e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~  200 (253)
T d1up7a2         127 RGGSMYS--TAAAHLIRDLETDEG---KIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQ-GKGDHFALSFIHAV  200 (253)
T ss_dssp             STTTTHH--HHHHHHHHHHHSSSC---EEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCC-CCCCHHHHHHHHHH
T ss_pred             ccCcchH--HHHHHHHHHHHcCCC---cEEEEeCCCcCcCCCCChhhheEEEEEecCCccccccc-CCCcHHHHHHHHHH
Confidence            3455565  788999999999976   355565 567875   8899999999999999999877 69999998887664


Q ss_pred             HHHHHHHHHH
Q 018433          340 KKELAGSIQK  349 (356)
Q Consensus       340 a~~l~~~~~~  349 (356)
                      ...-+-.++.
T Consensus       201 ~~~e~L~veA  210 (253)
T d1up7a2         201 KMYERLTIEA  210 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4433333433

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.40  E-value=2.1e-06  Score=77.75  Aligned_cols=75  Identities=13%  Similarity=0.079  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 018433          272 AYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  347 (356)
Q Consensus       272 A~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~  347 (356)
                      +..+++++++|.+|.+   .++.++ .++|.+   |+|+++++||+|+++|+.++.. ++|++..++++..-...-+-.+
T Consensus       152 ~e~av~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~k~~e~Ltv  227 (276)
T d1u8xx2         152 ASYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITV-GTIPQFQKGLMEQQVSVEKLTV  227 (276)
T ss_dssp             THHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC---cEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEeeec-CCCcHHHHHHHHHHHHHHHHHH
Confidence            3678999999999976   355555 567875   8899999999999999999877 6999999988876544433344


Q ss_pred             HHh
Q 018433          348 QKG  350 (356)
Q Consensus       348 ~~~  350 (356)
                      +.+
T Consensus       228 eAa  230 (276)
T d1u8xx2         228 EAW  230 (276)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.35  E-value=9.8e-07  Score=73.34  Aligned_cols=90  Identities=18%  Similarity=0.198  Sum_probs=60.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      |||+|||+ |.+|+++|..|...++  +|+.+|+++ ....+.+   ... .. . .  .++. +++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~---~~~-~~-~-~--~~~~-~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVE---RQL-VD-E-A--GQDL-SLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH---TTS-CS-E-E--ESCG-GGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHH---hhc-cc-e-e--eeec-ccccccccccccC--c
Confidence            89999999 9999999999999988  999999875 1111221   111 11 1 1  1344 7899999999874  3


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                                    ...+.++.+.+..+- |+.+|+..++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          123445666666654 5666665544

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.33  E-value=7.2e-07  Score=75.69  Aligned_cols=97  Identities=24%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC----C---CCeEEEEeCCCChhhhhCCCcEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----T---GAVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~----~---~~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      |||+|||| |..|+++|..|+..+.  +|.|+.++.....+..+....    .   ....... .++|+++++++||+||
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIF-WPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEE-CGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccc-ccccHHHHHhccchhh
Confidence            89999999 9999999999998887  999997643222333343221    1   1122222 3678889999999999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ++.  |              ...++++++++..+-++..+++.+
T Consensus        77 ~av--p--------------s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          77 LGV--S--------------TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             ECS--C--------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             ccc--c--------------hhhhHHHHHhhccccccceecccc
Confidence            974  2              123556777777776655555543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.1e-06  Score=81.16  Aligned_cols=113  Identities=17%  Similarity=0.142  Sum_probs=74.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CC---ChhhhhC--CCcEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENALT--GMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~---d~~~al~--~aDiV  116 (356)
                      |||.|+||+|++|+.++..|+..+.  +|+++|+..  .........+.. ...+..+.+ -+   .+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            8999999999999999999999987  999999744  222222222211 112222211 12   3445566  78999


Q ss_pred             EEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 018433          117 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  160 (356)
Q Consensus       117 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  160 (356)
                      |.+|+.+..+-  +...+.+..|+....++.+.++++....+|...
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~S  123 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecC
Confidence            99987542110  234567889999999999999998765544433

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=7.1e-07  Score=81.69  Aligned_cols=167  Identities=12%  Similarity=0.048  Sum_probs=102.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      +||.|+||+|++|++++..|+..++  +|+.+|... ....  .+.+......+.... ....+.++.++|+||.+|+..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~--~~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~~   76 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKR--NVEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASPA   76 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGG--GTGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCcCCHH--HHHHhcCCCceEEEe-hHHHHHHHcCCCEEEECcccC
Confidence            4999999999999999999999888  899998643 1111  111211122334332 233456678999999998754


Q ss_pred             CCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC------CCCc-cHHHHHHHHHHhCCCCCCCEEEechhhH
Q 018433          124 RKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN------PVNS-TVPIAAEVFKKAGTYDPKKLLGVTMLDV  194 (356)
Q Consensus       124 ~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN------Pv~~-~t~~~~~~~~~~~~~~~~kviG~t~ld~  194 (356)
                      ..+  ..+..+.+..|+....++.+.+++...  .+|.+|.      |... ...   ........+.|...+|.+.+..
T Consensus        77 ~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e---~~~~~~~~~~p~~~Y~~sK~~~  151 (312)
T d2b69a1          77 SPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSE---DYWGHVNPIGPRACYDEGKRVA  151 (312)
T ss_dssp             SHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCT---TCCCBCCSSSTTHHHHHHHHHH
T ss_pred             CchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCc---cccCCCCCCCCccHHHHHHHHH
Confidence            211  134556778999999999999998753  4555432      1110 000   0000001123445567766666


Q ss_pred             HHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          195 VRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       195 ~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      ..+-...++..|++...++ ..|+|.+.
T Consensus       152 E~~~~~~~~~~~~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         152 ETMCYAYMKQEGVEVRVARIFNTFGPRM  179 (312)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHhCCcEEEEEeeeEECCCC
Confidence            6677777788888876664 56788553

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=4.8e-07  Score=74.74  Aligned_cols=102  Identities=17%  Similarity=0.224  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      |||+|||+ |.+|+.++..|...|+  ++.++|+++.................... .+.+ .+++.++|+||++...+ 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESL-TAND-PDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEE-EESC-HHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCcccccccc-ccch-hhhhcccceEEEeeccc-
Confidence            89999999 9999999999999998  99999998721111111111111111111 1233 57889999999985322 


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  167 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~  167 (356)
                                     -..+..+.+..+- ++..|+.+.|=++..
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccHH
Confidence                           1345566666554 688888888876654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.24  E-value=5.9e-07  Score=77.02  Aligned_cols=73  Identities=14%  Similarity=0.200  Sum_probs=52.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcC--C------CCCeEEEEeCCCChhhhhCCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D------TGAVVRGFLGQPQLENALTGM  113 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~--~------~~~~v~~~~~t~d~~~al~~a  113 (356)
                      ..+.||+|||| |..|+++|..|...+.  +|.|+++++.....+.-.+.  .      ....+..   ++|+++++++|
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a~~~a   78 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYNGA   78 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHTTC
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHHHHHHhhccccccccccccccccccc---chhhhhccCCC
Confidence            34558999999 9999999999998887  99999987621111111121  1      1234553   47899999999


Q ss_pred             cEEEEcC
Q 018433          114 DLVIIPA  120 (356)
Q Consensus       114 DiVIi~a  120 (356)
                      |+||++.
T Consensus        79 d~iiiav   85 (189)
T d1n1ea2          79 EIILFVI   85 (189)
T ss_dssp             SCEEECS
T ss_pred             CEEEEcC
Confidence            9999974

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.20  E-value=1.8e-06  Score=80.17  Aligned_cols=174  Identities=15%  Similarity=0.054  Sum_probs=103.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe--CCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~  119 (356)
                      .+.|||.|+||+|++|++++..|+.+++  +|+.+|.........++.    ........  ...++.+++++.|.||.+
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~d~Vih~   86 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMF----CDEFHLVDLRVMENCLKVTEGVDHVFNL   86 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGT----CSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcc----cCcEEEeechhHHHHHHHhhcCCeEeec
Confidence            3579999999999999999999999998  999999765211111111    11222110  012344567899999998


Q ss_pred             CCCCCCC---CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC-ccHHH--HHH---HHHHhCCCCCCCEEEec
Q 018433          120 AGVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN-STVPI--AAE---VFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       120 ag~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~-~~t~~--~~~---~~~~~~~~~~~kviG~t  190 (356)
                      ++.....   ...-......|......+.....+.+.. .+|..|.-.. ....-  ..+   .........|...+|.+
T Consensus        87 a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~s  165 (363)
T d2c5aa1          87 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLE  165 (363)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHH
T ss_pred             ccccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccccccccccccccccccCCcCCCCCHHHHH
Confidence            8654221   2234456678999999999999887644 3444432111 10000  000   00011122345566776


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-ccEEecccC
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  222 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~  222 (356)
                      .+...++-..+.+..|++...++ ..++|.++.
T Consensus       166 K~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~  198 (363)
T d2c5aa1         166 KLATEELCKHYNKDFGIECRIGRFHNIYGPFGT  198 (363)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCc
Confidence            66666666777788888766664 567886654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.15  E-value=2.9e-06  Score=77.07  Aligned_cols=111  Identities=22%  Similarity=0.213  Sum_probs=74.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH--H-HHHhcCCCCCeEEEEeCC----CChhhhhCCC--cEE
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--T-ADISHMDTGAVVRGFLGQ----PQLENALTGM--DLV  116 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~--~-~dl~~~~~~~~v~~~~~t----~d~~~al~~a--DiV  116 (356)
                      ||.|+||+|++|++++..|+.+|+  +|+.+|.....+.  . ..+...   ..++.+.+.    .++.++++++  |+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~---~~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhcc---CCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            899999999999999999999988  8999985431111  1 122221   223332221    2345566554  999


Q ss_pred             EEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          117 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       117 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |.+|+......  .+-.+....|+.....+.+...+....-.++..|
T Consensus        77 ih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          77 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            99987543211  1335667889999999999999987666655554

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.14  E-value=4.7e-06  Score=76.06  Aligned_cols=168  Identities=18%  Similarity=0.183  Sum_probs=105.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CChhhhhCCCcEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~----~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiV  116 (356)
                      |||.|+||+|++|++++..|+..++    ..+++.+|.....+....+........++.+...    ........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            8999999999999999999998763    4688889876522221122222112334443211    1234567999999


Q ss_pred             EEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC------CccHHHHHHHHHHhCCCCCCCEE
Q 018433          117 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV------NSTVPIAAEVFKKAGTYDPKKLL  187 (356)
Q Consensus       117 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv------~~~t~~~~~~~~~~~~~~~~kvi  187 (356)
                      +..|+.+....  ....+.+..|+.....+.+.+.++...- +|..| .-+      ...        .+...+.|...+
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~-~I~~Ss~~~yg~~~~~~~--------~E~~~~~p~~~Y  151 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR-VVHVSTNQVYGSIDSGSW--------TESSPLEPNSPY  151 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEEEGGGGCCCSSSCB--------CTTSCCCCCSHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCce-EEEeecceeecCCCCCCC--------CCCCCCCCCCHH
Confidence            99987653221  2234556899999999999999887543 44443 211      111        111223445566


Q ss_pred             EechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          188 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       188 G~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      |.+.+....+-..+++..|++...++ ..++|.+.
T Consensus       152 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~  186 (322)
T d1r6da_         152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQ  186 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCC
Confidence            77666666667777888888877775 66788543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=8.3e-06  Score=69.73  Aligned_cols=104  Identities=16%  Similarity=0.167  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~~~al~~aDiVIi  118 (356)
                      .++||+|+||+|++|++++..|+.+|+  +|.+++++..+     +.... ...++.+.+.    +++.++++++|+||.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~-----~~~~~-~~~~~~~~gD~~d~~~l~~al~~~d~vi~   73 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVIV   73 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhh-----ccccc-ccccccccccccchhhHHHHhcCCCEEEE
Confidence            456999999999999999999999987  99999987521     11111 1122222221    456678999999999


Q ss_pred             cCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 018433          119 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  160 (356)
Q Consensus       119 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~  160 (356)
                      +.|.........     .+....+.+.+.+++..-+ .+|.+
T Consensus        74 ~~g~~~~~~~~~-----~~~~~~~~l~~aa~~~~v~-r~i~~  109 (205)
T d1hdoa_          74 LLGTRNDLSPTT-----VMSEGARNIVAAMKAHGVD-KVVAC  109 (205)
T ss_dssp             CCCCTTCCSCCC-----HHHHHHHHHHHHHHHHTCC-EEEEE
T ss_pred             EeccCCchhhhh-----hhHHHHHHHHHHHHhcCCC-eEEEE
Confidence            887542222211     2344566677777776633 34444

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=3.4e-06  Score=78.44  Aligned_cols=167  Identities=14%  Similarity=0.031  Sum_probs=100.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-h-hHHHHHhcC--CCCCeEEEEeC----CCChhhhhCCC--c
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-P-GVTADISHM--DTGAVVRGFLG----QPQLENALTGM--D  114 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~-~-g~~~dl~~~--~~~~~v~~~~~----t~d~~~al~~a--D  114 (356)
                      ++.|+||+|++|++++..|+..|.  +|+.+|+.. . . .....+.+.  .....+..+.+    ..++++.+++.  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            455999999999999999999987  999999854 1 0 011111111  11234444321    12334455544  9


Q ss_pred             EEEEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhC-C-CcEEEEec------CCCCccHHHHHHHHHHhCCCCCC
Q 018433          115 LVIIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLIS------NPVNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       115 iVIi~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~-p-~a~viv~t------NPv~~~t~~~~~~~~~~~~~~~~  184 (356)
                      +|+.+|+....  ...+....+..|+.....+.+.+++.+ . ...+|.+|      +|.+...       .+...+.|.
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~-------~E~~~~~P~  153 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQ-------KETTPFYPR  153 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSB-------CTTSCCCCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCc-------CCCCCCCCC
Confidence            99999886532  224455667889999999999999876 3 34566554      3322210       111223455


Q ss_pred             CEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          185 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       185 kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      ..+|.+.+....+-...++..+++..-++ ..++|...
T Consensus       154 ~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~  191 (357)
T d1db3a_         154 SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR  191 (357)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC
Confidence            66777766666666777788887766654 44777643

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.8e-06  Score=74.34  Aligned_cols=111  Identities=20%  Similarity=0.132  Sum_probs=73.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE--EeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~--~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      +||.|+||+|++|++++..|+..+...+|.++++++..........    .....  +....++.++++++|+|+.++|.
T Consensus        15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~----i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKN----VNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGG----CEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccce----eeeeeecccccccccccccccccccccccc
Confidence            4899999999999999999998887779999998761100000011    01111  11124677889999999999875


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .. ......++...|.....++++...+...+- ++.+|
T Consensus        91 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~-fi~~S  127 (232)
T d2bkaa1          91 TR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKH-FNLLS  127 (232)
T ss_dssp             CH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEC
T ss_pred             cc-cccchhhhhhhcccccceeeecccccCccc-cccCC
Confidence            31 122345566788888889998887765453 44443

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.99  E-value=6.2e-06  Score=68.25  Aligned_cols=64  Identities=20%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||. |.+|+.+|..|+..++  +|+.+|+++.  .+.++....  .  ..   ..+..+++++||+||++-
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~--~--~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAG--A--ET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTT--C--EE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhh--h--hh---cccHHHHHhCCCeEEEEc
Confidence            89999999 9999999999999998  9999999751  222233221  1  11   245678999999999974

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=97.95  E-value=4.3e-06  Score=78.01  Aligned_cols=176  Identities=16%  Similarity=0.061  Sum_probs=100.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-CCh---hhhhC--CCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQL---ENALT--GMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d~---~~al~--~aDiVIi  118 (356)
                      |||.|+||+|++|++++..|+..+.- .++++|.....+....+.+......+..+.+. +|.   ++.++  +.|+||.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~-vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC-EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            79999999999999999999988762 47788865421111223333222345543211 232   33333  5899999


Q ss_pred             cCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCC--------cEEEEecC-CCCcc---HHHHHHH------HHHh
Q 018433          119 PAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPN--------ATVNLISN-PVNST---VPIAAEV------FKKA  178 (356)
Q Consensus       119 ~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~--------a~viv~tN-Pv~~~---t~~~~~~------~~~~  178 (356)
                      +|+.+..+.  .+-.+.+..|+.....+...+.++...        ..++..|. -+...   ... .+-      ....
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~-~~~~~~~~~~~e~  158 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDE-VENSVTLPLFTET  158 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGG-SCTTSCCCCBCTT
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCc-cccccCCCCcccC
Confidence            987542110  122456788888888888888765422        24555432 11000   000 000      0000


Q ss_pred             CCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecccC
Q 018433          179 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  222 (356)
Q Consensus       179 ~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~  222 (356)
                      ....|..++|.+.+...++-...++..|++...++ ..|+|.++.
T Consensus       159 ~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~  203 (361)
T d1kewa_         159 TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF  203 (361)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCC
Confidence            11223455677766777777777788888777664 557886653

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.94  E-value=2.4e-05  Score=70.36  Aligned_cols=74  Identities=12%  Similarity=0.052  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 018433          273 YAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ  348 (356)
Q Consensus       273 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~L~~sa~~l~~~~~  348 (356)
                      ..++++++||.+|.+.   ++.++ .++|.+   |+|+++++||+|+++|+.++.. ++|++..++++......-+-.++
T Consensus       146 e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~~~~e~L~ve  221 (270)
T d1s6ya2         146 DAACSLISSIYNDKRD---IQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAV-GDLPVAVRGLVQQIKSFERVAAE  221 (270)
T ss_dssp             HHHHHHHHHHHHTCCC---EEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCe---EEEEECCCCCcCCCCCccceEEEEEEEECCceEeeec-CCCcHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999763   55565 567875   8999999999999999999877 69999999988776554444444


Q ss_pred             Hh
Q 018433          349 KG  350 (356)
Q Consensus       349 ~~  350 (356)
                      .+
T Consensus       222 Aa  223 (270)
T d1s6ya2         222 AA  223 (270)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.93  E-value=2.1e-05  Score=72.14  Aligned_cols=170  Identities=15%  Similarity=0.027  Sum_probs=106.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh---HHHHHhcCCCCCeEEEEeCC-CC---hhhhhCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG---VTADISHMDTGAVVRGFLGQ-PQ---LENALTGM  113 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g---~~~dl~~~~~~~~v~~~~~t-~d---~~~al~~a  113 (356)
                      ++++|.|+||+|++|++++..|...|.  +|..+|...  ...   ....+........++...+. .|   ......+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            356899999999999999999999998  999999743  111   11111111111233332211 12   23456888


Q ss_pred             cEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC------CccHHHHHHHHHHhCCCCCCC
Q 018433          114 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------NSTVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       114 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv------~~~t~~~~~~~~~~~~~~~~k  185 (356)
                      |.|+.++....-+  ..+.......|+.....+.+.+.+.....+|...|..+      ...+        +..-..|..
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~--------E~~~~~p~~  164 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKV--------EDTIGKPLS  164 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC--------TTCCCCCCS
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCcc--------CCCCCCCCC
Confidence            9999887543211  23345677899999999999999877655554444322      1111        111233445


Q ss_pred             EEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecccC
Q 018433          186 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  222 (356)
Q Consensus       186 viG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~  222 (356)
                      .+|.+.+...++...+++..+++..-++ ..++|.+.+
T Consensus       165 ~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         165 PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            6777777777777788888888877776 558887654

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=97.92  E-value=1.2e-05  Score=73.94  Aligned_cols=176  Identities=16%  Similarity=0.106  Sum_probs=100.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  119 (356)
                      +|||.|+||+|+||++++..|+..+.-..++.+|.....+....+.... ...+..+.+    ...+.+++++.|.|+..
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~-~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~   80 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAIL-GDRVELVVGDIADAELVDKLAAKADAIVHY   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGC-SSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhh-cCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence            6899999999999999999998887644677777533111111111111 123333321    13345678999999998


Q ss_pred             CCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc-c-----HHHH----HHHHHHhCCCCCCCEE
Q 018433          120 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS-T-----VPIA----AEVFKKAGTYDPKKLL  187 (356)
Q Consensus       120 ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~-~-----t~~~----~~~~~~~~~~~~~kvi  187 (356)
                      |+......  .+..+.+..|+.....+.....+....-+++ .|.-+.. .     .+..    .+.....+...|...+
T Consensus        81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~-ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHV-STDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEE-EEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhcccccchhhCcccceeeehHhHHhhhhhhcccccccccc-ccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            86543222  1234567889999999999998887532222 2211110 0     0000    0000011122234456


Q ss_pred             EechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          188 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       188 G~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      |.+.+...++-...++..|++..-++ ..++|.+.
T Consensus       160 ~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~  194 (346)
T d1oc2a_         160 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence            77666666666666777777665553 55778544

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=2.1e-05  Score=71.90  Aligned_cols=166  Identities=14%  Similarity=0.045  Sum_probs=94.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC----CCh-hhhhCCCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQL-ENALTGMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t----~d~-~~al~~aDiVIi~  119 (356)
                      |||.|+||+|++|++++..|+..+.. +|+.+|.... +. ..+..   .+.++.+.+.    .++ +.+++++|+||.+
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~-~~-~~~~~---~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSD-AI-SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCG-GG-GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCc-ch-hhhcc---CCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            79999999999999999999887732 8999998641 11 01111   1233333221    122 2377899999999


Q ss_pred             CCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC-------CCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          120 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-------VNSTVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       120 ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP-------v~~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      |+.....+  ..-...+..|+.....+++.+.+....-  ++++..       ....... ........-..|...+|.+
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~--~~~ss~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~Y~~s  151 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI--IFPSTSEVYGMCSDKYFDED-HSNLIVGPVNKPRWIYSVS  151 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE--EEECCGGGGBTCCCSSBCTT-TCCCBCCCTTCGGGHHHHH
T ss_pred             cccccccccccCCccccccccccccccccccccccccc--cccccccccccccccccccc-cccccccccCCCcchhhhc
Confidence            88643222  1234567899999999999998876543  222211       1111000 0000000001123445665


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-ccEEec
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVD-VPVVGG  219 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~  219 (356)
                      .+...++-...++..|++..-++ ..+.|.
T Consensus       152 K~~~E~~~~~~~~~~~~~~~i~r~~~~~g~  181 (342)
T d2blla1         152 KQLLDRVIWAYGEKEGLQFTLFRPFNWMGP  181 (342)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECSEECS
T ss_pred             ccchhhhhhhhhcccCceeEEeeccccccc
Confidence            55556666777777787755442 344443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.87  E-value=2.4e-05  Score=73.17  Aligned_cols=175  Identities=13%  Similarity=0.110  Sum_probs=99.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h---------------H-HHHHhcCCCCCeEEEEeCC-C
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G---------------V-TADISHMDTGAVVRGFLGQ-P  104 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~--g---------------~-~~dl~~~~~~~~v~~~~~t-~  104 (356)
                      .|||.|+||+|++|++++..|++.|+  +|+.+|.....  .               . ...+.... ...+..+.+. +
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhhc-CCCcEEEEccCC
Confidence            37999999999999999999999998  99999942100  0               0 00011000 1233333211 1


Q ss_pred             C---hhhhhCC--CcEEEEcCCCCCCCC--Cc---HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc-HHHH-H
Q 018433          105 Q---LENALTG--MDLVIIPAGVPRKPG--MT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-VPIA-A  172 (356)
Q Consensus       105 d---~~~al~~--aDiVIi~ag~~~~~g--~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~-t~~~-~  172 (356)
                      |   +.+++++  .|+|+.+|+....+.  .+   -.+....|+.....+.+.+.+++.+..++..|.-.... ...- .
T Consensus        78 d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~  157 (393)
T d1i24a_          78 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIE  157 (393)
T ss_dssp             SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBC
T ss_pred             CHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccc
Confidence            2   3345553  499999987542111  12   23566889999999999999999887777665332110 0000 0


Q ss_pred             HHHH----------HhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEeccc
Q 018433          173 EVFK----------KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  221 (356)
Q Consensus       173 ~~~~----------~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg  221 (356)
                      +...          ......|...+|.+.+....+-...++..+++...++ ..++|.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~  217 (393)
T d1i24a_         158 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT  217 (393)
T ss_dssp             SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred             cccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCc
Confidence            0000          0001122334555555555555666778787766664 45677543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.80  E-value=7.9e-05  Score=61.47  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      +||+|||+ |.+|+++|..|...++..+|+.+|.+. ....+.+..-    .... .  +........++|+||++.  |
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~----~~~~-~--~~~~~~~~~~~dlIila~--p   71 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI----IDEG-T--TSIAKVEDFSPDFVMLSS--P   71 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS----CSEE-E--SCGGGGGGTCCSEEEECS--C
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc----chhh-h--hhhhhhhccccccccccC--C
Confidence            36999999 999999999999988777999999976 2222222211    1111 1  122234557899999985  2


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  164 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv  164 (356)
                                    ...+.++.+.+..+. ++.+++-+++--
T Consensus        72 --------------~~~~~~vl~~l~~~~~~~~ii~d~~s~k   99 (171)
T d2g5ca2          72 --------------VRTFREIAKKLSYILSEDATVTDQGSVK   99 (171)
T ss_dssp             --------------HHHHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             --------------chhhhhhhhhhhcccccccccccccccc
Confidence                          122444555565554 677777665543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.76  E-value=0.00019  Score=65.66  Aligned_cols=113  Identities=15%  Similarity=0.027  Sum_probs=72.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH---HHHhcCCCCCeEEEEe----CCCChhhhhCCCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT---ADISHMDTGAVVRGFL----GQPQLENALTGMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~---~dl~~~~~~~~v~~~~----~t~d~~~al~~aDi  115 (356)
                      ..||.|+||+|++|++++..|+..|+  +|+...++. .....   .+....  ......+.    ....+.++++++|.
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYP--GRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHST--TTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhcccc--ccccEEEeccccchhhhhhhcccchh
Confidence            35999999999999999999999987  777666543 11111   111111  11222111    12345578999999


Q ss_pred             EEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          116 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       116 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |+..++.. ....+...+...|+....++.+.+.++.--..++..|
T Consensus        87 v~~~a~~~-~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S  131 (342)
T d1y1pa1          87 VAHIASVV-SFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             EEECCCCC-SCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             hhhhcccc-cccccccccccchhhhHHHHHHhhhcccccccccccc
Confidence            99987754 2334455666789999999999998864223344433

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=4.6e-05  Score=69.96  Aligned_cols=113  Identities=19%  Similarity=0.070  Sum_probs=72.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhH---HHHHhcCCCCCeEEE-EeCCCChhhhhC--CCcEEE
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV---TADISHMDTGAVVRG-FLGQPQLENALT--GMDLVI  117 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~---~~dl~~~~~~~~v~~-~~~t~d~~~al~--~aDiVI  117 (356)
                      .|.|+||+|++|++++..|+..+.  +|+.+|...  ....   ...+.+... ..+.. +....+++++++  +.|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHI-PFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCC-CEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhcccCC-eEEEeecCCHHHHHHHHhccCCCEEE
Confidence            588999999999999999999987  999999643  1111   111222111 11111 000112333444  789999


Q ss_pred             EcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          118 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      .+|+.+...  .+........|......+.+..++.....++...|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            998765211  22345667789999999999999887665554444

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.70  E-value=2.8e-05  Score=63.69  Aligned_cols=65  Identities=18%  Similarity=0.264  Sum_probs=47.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||+ |.+|++++..|...+.  ++.++|++..  ...++.... .  +.   .+.+.++++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~--~~~~l~~~~-g--~~---~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLE--RSKEIAEQL-A--LP---YAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHH--HHHHHHHHH-T--CC---BCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHH--hHHhhcccc-c--ee---eechhhhhhhccceeeeec
Confidence            89999999 9999999999988776  9999998641  112222110 0  11   1356778899999999985

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.68  E-value=6.9e-05  Score=61.79  Aligned_cols=65  Identities=22%  Similarity=0.377  Sum_probs=49.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ++||++||. |.+|+.+|..|...++  +|..+|++..  ...++....   ...    ..+..++++++|+|++..
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~--~~~~~~~~~---~~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAG---ASA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTT---CEE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchh--hhhhhhhhh---ccc----cchhhhhccccCeeeecc
Confidence            359999999 9999999999999998  9999998752  222333322   111    245678999999999974

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.59  E-value=6.6e-05  Score=63.64  Aligned_cols=107  Identities=19%  Similarity=0.262  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCC--------------CCCeEEEEeCCCChhhhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TGAVVRGFLGQPQLENAL  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~--------------~~~~v~~~~~t~d~~~al  110 (356)
                      |||+|||. |+||..+|..++ .+.  +++.+|+++.  ....|....              .......   +++...+.
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~--~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~---~~~~~~~~   71 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPS--KVDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHH--HHHHHhhcccccchhhHHHHhhhhhhhhhc---cchhhhhh
Confidence            89999998 999999997664 576  9999999861  111111110              1122222   24556788


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCC
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVN  165 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv~  165 (356)
                      .++|+++++...|.....+-.     ....+....+.+....+...+++-| -|..
T Consensus        72 ~~~~ii~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~iii~Stv~pg  122 (196)
T d1dlja2          72 KEAELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSVNSHATLIIKSTIPIG  122 (196)
T ss_dssp             HHCSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHHCSSCEEEECSCCCTT
T ss_pred             hccccccccCCccccccCCCc-----ceeEEeehhhhhhhcccceeEEeeeecCce
Confidence            999999998766632211111     1123444555555566666555443 4443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.56  E-value=6.7e-05  Score=68.57  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCC-CC---hhhhhC--CCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT--GMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al~--~aDi  115 (356)
                      .+||.|+||+|++|++++..|+..|.  +|+.+|++.  ..... +.....  ..++...+. +|   +.++++  ..|+
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~-~~~~~~--~~i~~~~~Dl~d~~~l~~~~~~~~~~~   82 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLF-ETARVA--DGMQSEIGDIRDQNKLLESIREFQPEI   82 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHH-HHTTTT--TTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHH-hhhhcc--cCCeEEEeeccChHhhhhhhhhchhhh
Confidence            46999999999999999999999998  999999876  22221 111111  122222111 22   233444  4588


Q ss_pred             EEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          116 VIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       116 VIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |+.+++.+....  ..-......|+.....+.+.+.+......++..|
T Consensus        83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            888876542110  1224456789999999999999988666555443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.55  E-value=0.00022  Score=64.04  Aligned_cols=166  Identities=14%  Similarity=0.029  Sum_probs=97.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-CCh---hhhh--CCCcEEEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQL---ENAL--TGMDLVII  118 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d~---~~al--~~aDiVIi  118 (356)
                      +||.|+||+|++|++++..|+.+|+  +|+.+|+.........+.+......++.+... .|.   .+.+  ...++++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            3899999999999999999999988  99999986511111122222222344443211 222   1112  24666776


Q ss_pred             cCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC------CCCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          119 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN------PVNSTVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       119 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN------Pv~~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      +++.....  .......+..|+.....+.+.+.++.+...++..|.      +.+...       .+.+.+.+...+|.+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~-------~E~~~~~p~~~Y~~s  151 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQ-------DENTPFYPRSPYGVA  151 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSB-------CTTSCCCCCSHHHHH
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCC-------CCCCCccccChhHHH
Confidence            66543211  123456678899999999999999987776666532      111100       011122234455666


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-ccEEec
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVD-VPVVGG  219 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~  219 (356)
                      .+...++....++..+++...++ ..++|.
T Consensus       152 K~~~E~~~~~~~~~~~~~~~~lr~~~vyGp  181 (321)
T d1rpna_         152 KLYGHWITVNYRESFGLHASSGILFNHESP  181 (321)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEecccCC
Confidence            55556666666777777654443 335664

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.54  E-value=0.00035  Score=64.70  Aligned_cols=175  Identities=15%  Similarity=0.138  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC----------c-hhHHHHHhcCC------CCCeEEEEeCC-C
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN----------T-PGVTADISHMD------TGAVVRGFLGQ-P  104 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~----------~-~g~~~dl~~~~------~~~~v~~~~~t-~  104 (356)
                      .|||.|+||+|++|++++..|+. .+.  +|+.+|.-.          . ......+....      ....+....+. +
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            48999999999999999998875 567  999999421          1 11112222211      11223332211 2


Q ss_pred             C---hhhhh---CCCcEEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC-C--ccHHHHHH
Q 018433          105 Q---LENAL---TGMDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-N--STVPIAAE  173 (356)
Q Consensus       105 d---~~~al---~~aDiVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv-~--~~t~~~~~  173 (356)
                      |   +++++   +++|+|+.+|+......  .........|......+....++..+...+...+--+ .  ..-....+
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  159 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTN  159 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----C
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccc
Confidence            2   23333   57899999987543211  1234556789999999999999888765544432100 0  00000000


Q ss_pred             --HHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          174 --VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       174 --~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                        -+.......|...+|.+.+...++-..+.+..|++...++ ..++|..
T Consensus       160 ~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~  209 (383)
T d1gy8a_         160 AEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (383)
T ss_dssp             CCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             ccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccC
Confidence              0000011234455666666666666777777888766664 4566643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.51  E-value=8.1e-05  Score=62.07  Aligned_cols=74  Identities=12%  Similarity=0.201  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .|||+|||. |.+|+.+|..|+..++  +|+.+|+++  ........................++...+..++.+++..
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence            489999999 9999999999999998  999999976  2222222222221223333211123334556777777763

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00025  Score=64.46  Aligned_cols=166  Identities=12%  Similarity=0.038  Sum_probs=96.4

Q ss_pred             CeE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhHHHHHhcC---CCCCeEEEEeCC-CC---hhhhh--C
Q 018433           45 FKV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHM---DTGAVVRGFLGQ-PQ---LENAL--T  111 (356)
Q Consensus        45 ~KI-~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~--~g~~~dl~~~---~~~~~v~~~~~t-~d---~~~al--~  111 (356)
                      +|| .|+||+|++|++++..|+..|+  +|+-+|+.. .  .+...++...   .....++.+.+. +|   ...++  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            389 6999999999999999999998  999999864 1  1111111111   111234443221 12   22233  3


Q ss_pred             CCcEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCC-C-cEEEEec------CCCC-ccHHHHHHHHHHhCC
Q 018433          112 GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP-N-ATVNLIS------NPVN-STVPIAAEVFKKAGT  180 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p-~-a~viv~t------NPv~-~~t~~~~~~~~~~~~  180 (356)
                      +.|+|+..++.....  -....+.+..|+.....+.+.+++.+- + ..++.+|      +|-. .+.        +-..
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~--------E~~~  150 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQK--------ETTP  150 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBC--------TTSC
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCC--------CCCC
Confidence            556777776643211  123456678899999999999998763 3 4566554      2211 111        1122


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecc
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  220 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  220 (356)
                      +.|...+|.+.+...++-...++..+++...++ ..++|..
T Consensus       151 ~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~  191 (347)
T d1t2aa_         151 FYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  191 (347)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            445566777766666666666777777654443 4466754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.42  E-value=8.2e-05  Score=60.54  Aligned_cols=64  Identities=17%  Similarity=0.181  Sum_probs=46.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||+|||. |.+|+.++..|...++  ++..+|......... .....   .+.     .+..+++++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~---~~~-----~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RARTV---GVT-----ETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHHH---TCE-----ECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhcc---ccc-----ccHHHHHhhcCeEEEEe
Confidence            79999999 9999999999999998  889998766222111 11111   111     12368899999999984

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.41  E-value=7.9e-05  Score=63.42  Aligned_cols=102  Identities=11%  Similarity=0.037  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh----hhhhCCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~----~~al~~aDiVIi~  119 (356)
                      ++||.|+||+|++|++++..|+..+...+|+...++....          .+.+...  ..|+    .....+.|.||.+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~----------~~~~~~~--~~d~~~~~~~~~~~~d~vi~~   69 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE----------HPRLDNP--VGPLAELLPQLDGSIDTAFCC   69 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC----------CTTEECC--BSCHHHHGGGCCSCCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh----------ccccccc--ccchhhhhhccccchheeeee
Confidence            4699999999999999999999988765776665543110          0111111  0111    2223567999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 018433          120 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV  157 (356)
Q Consensus       120 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  157 (356)
                      +|..........++...|......+++..++....-++
T Consensus        70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          70 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             eeeeccccccccccccchhhhhhhcccccccccccccc
Confidence            87653333334566778888888899888875544433

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.40  E-value=5.4e-05  Score=61.71  Aligned_cols=65  Identities=15%  Similarity=0.113  Sum_probs=44.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |||++||+ |++|++++..|...+. .++.++|+++.  ....+....   .+...   ++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~~--~~~~l~~~~---~~~~~---~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAE--KRERLEKEL---GVETS---ATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHH--HHHHHHHHT---CCEEE---SSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCChh--HHHHhhhhc---ccccc---ccc-ccccccceEEEec
Confidence            89999999 9999999998776652 39999999751  112232211   12222   343 5689999999984

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00015  Score=65.10  Aligned_cols=156  Identities=14%  Similarity=0.097  Sum_probs=92.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhh--hCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA--LTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~a--l~~aDiVIi~ag~  122 (356)
                      +||.|+||+|++|++++..|++.+.  +++++|....    .|+.+.            ....+.  ..+.|+|++.++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~------------~~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDS------------RAVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCH------------HHHHHHHhhcCCCEEEEcchh
Confidence            4999999999999999999999887  6666665430    011110            011111  2357889988754


Q ss_pred             CCCC---CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC------ccHHHHHHH-HHHhCCCCCCCEEEechh
Q 018433          123 PRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN------STVPIAAEV-FKKAGTYDPKKLLGVTML  192 (356)
Q Consensus       123 ~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~------~~t~~~~~~-~~~~~~~~~~kviG~t~l  192 (356)
                      ....   .....+++..|+.....+...+.++.-.-.|..-|.-+.      ..+    |- ....+..+++..+|.+.+
T Consensus        65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~----E~~~~~~~~~~~~~~Y~~sK~  140 (315)
T d1e6ua_          65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMA----ESELLQGTLEPTNEPYAIAKI  140 (315)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBC----GGGTTSSCCCGGGHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCcc----CCccccCCCCCCCCHHHHHHH
Confidence            3111   123456678899999999999988764433333231110      010    00 000011122334677766


Q ss_pred             hHHHHHHHHHHHhCCCCCCCc-ccEEecccC
Q 018433          193 DVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  222 (356)
Q Consensus       193 d~~R~~~~la~~l~v~~~~v~-~~viG~hg~  222 (356)
                      ...++-..+++..|++..-++ ..|+|.++.
T Consensus       141 ~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~  171 (315)
T d1e6ua_         141 AGIKLCESYNRQYGRDYRSVMPTNLYGPHDN  171 (315)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeccEECCCCC
Confidence            666776777788888766665 668887654

>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=0.00036  Score=62.61  Aligned_cols=55  Identities=11%  Similarity=-0.050  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCH
Q 018433          273 YAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNE  330 (356)
Q Consensus       273 ~a~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~  330 (356)
                      ..++++++||.+|++   .++.++ .++|.+   |+|.++++||+|+++|+.++.-.+.++.
T Consensus       153 e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~~vg~~~p~  211 (278)
T d1vjta2         153 EQHIPFINAIANNKR---VRLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHREKVEPDLTH  211 (278)
T ss_dssp             CSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEECCCCSCCCH
T ss_pred             HHHHHHHHHHhCCCC---eEEEEECCCCCcCCCCCchhheEeEEEEeCCceeeeecCCCChH
Confidence            567899999999976   355555 567886   8899999999999999999865323444

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00063  Score=55.12  Aligned_cols=92  Identities=11%  Similarity=0.100  Sum_probs=58.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~--~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      .||+|+||+|.||+-+...|+..+  ...+++++..+...+........  ...+..   ..+ .++++++|++|++.+ 
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~--~~~~~~---~~~-~~~~~~~DivF~a~~-   74 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFD-LEALKALDIIVTCQG-   74 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTC--CCBCEE---TTC-HHHHHTCSEEEECSC-
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCC--ceeeec---ccc-hhhhhcCcEEEEecC-
Confidence            499999999999999997766654  45689988876522221111111  111111   234 357899999999864 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  158 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~vi  158 (356)
                                     ....+++++.+.+.+.+++||
T Consensus        75 ---------------~~~s~~~~~~~~~~g~~~~VI   95 (146)
T d1t4ba1          75 ---------------GDYTNEIYPKLRESGWQGYWI   95 (146)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCCEEE
T ss_pred             ---------------chHHHHhhHHHHhcCCCeecc
Confidence                           233556777777665555543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.34  E-value=0.00027  Score=58.81  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=60.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC-CCeEEEEeCCCChhhhhCCCcEEEEcCCCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAGVPR  124 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  124 (356)
                      +|+|||. |.+|+.+|..|+..++  +|+.+|+++.+  ..++..... ...........+..+++.++|.+|++...  
T Consensus         4 nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~--   76 (176)
T d2pgda2           4 DIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKA--   76 (176)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCT--
T ss_pred             cEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHhccccccccchhhhhhhhhhhcccceEEEecCc--
Confidence            7999999 9999999999999998  99999997622  222322211 11222211124556788999999997421  


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec
Q 018433          125 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  161 (356)
Q Consensus       125 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~t  161 (356)
                                   .+.+.++...+.... |+.++|..|
T Consensus        77 -------------~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          77 -------------GQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             -------------THHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             -------------hHHHHHHHHHHHhccccCcEEEecC
Confidence                         122344455555555 556666554

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=0.00048  Score=62.66  Aligned_cols=61  Identities=13%  Similarity=0.039  Sum_probs=48.4

Q ss_pred             HHHHHHHHHcCCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHH-HHHH
Q 018433          275 AVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERI-GLEK  338 (356)
Q Consensus       275 ~~~li~ai~~~~~~~~~v~~~~-~~~g~~---~~d~~~s~P~~ig~~Gv~~i~~~~~L~~~E~~-~L~~  338 (356)
                      +++++.||.+|++.   ++.++ .++|.+   |+|.++++||+|+++|+.++.-.++|++.-+. ++..
T Consensus       184 a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP~~~~~gl~~~  249 (308)
T d1obba2         184 HIPFIDALLNDNKA---RFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRVVKYYLRP  249 (308)
T ss_dssp             HHHHHHHHHHCCCE---EEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHHHHHTHHH
T ss_pred             HHHHHHHHHcCCCe---EEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCChHHHHHHHHH
Confidence            78999999999763   55565 567876   88999999999999999998632589987644 5544

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.30  E-value=0.00014  Score=57.58  Aligned_cols=99  Identities=20%  Similarity=0.156  Sum_probs=59.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCCh---hh-hhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---EN-ALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~---~~-al~~aDiVIi~a  120 (356)
                      |||.|+|+ |.+|..++..|...+.  +++++|.++.  .+..+.... ...+- ....+|.   ++ .+++||.++.+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~--~~~~~~~~~-~~~vi-~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKD--ICKKASAEI-DALVI-NGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHHHHHC-SSEEE-ESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChh--hhhhhhhhh-hhhhc-cCcccchhhhhhcChhhhhhhcccC
Confidence            89999999 9999999999998888  9999999861  111122110 11111 1111222   22 258999999874


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      ...           ..|+..    +...++++++-++..+.+|..
T Consensus        74 ~~d-----------~~N~~~----~~~~k~~~~~~iI~~~~~~~~  103 (132)
T d1lssa_          74 GKE-----------EVNLMS----SLLAKSYGINKTIARISEIEY  103 (132)
T ss_dssp             SCH-----------HHHHHH----HHHHHHTTCCCEEEECSSTTH
T ss_pred             CcH-----------HHHHHH----HHHHHHcCCceEEEEecCHHH
Confidence            321           345422    223445777766655667654

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.30  E-value=0.00069  Score=54.95  Aligned_cols=110  Identities=12%  Similarity=0.087  Sum_probs=68.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~--~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      |||+||||+|++|.-+...|....  ...++.++......+...++.    ........ ..| .+.++++|+|+++.. 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~----~~~~~~~~-~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFG----KDAGMLHD-AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSS----SCCCBCEE-TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccC----Ccceeeec-ccc-hhhhccccEEEEecC-
Confidence            799999999999999997766533  346888887655322211111    11111111 234 367899999999853 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEech
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  191 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~  191 (356)
                                     -...+++++.+.+.+.+.+|  +.|-.|.             .++++-++++.-
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsdf-------------R~~~dvpl~lPE  112 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAASTL-------------RMDKEAIITLDP  112 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSSTT-------------TTCTTEEEECHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCccc-------------cccCCceEEeCC
Confidence                           22355788888887777755  4444431             255566666643

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.002  Score=56.67  Aligned_cols=160  Identities=15%  Similarity=0.178  Sum_probs=94.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC----------hhhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~al~  111 (356)
                      +.+.|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++........+..+.. -+|          ..+.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            3688999999999999999999998  999999986  4444555655432233333211 122          122356


Q ss_pred             CCcEEEEcCCCCCC-C--CCc---HHHHHHHH----HHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 GMDLVIIPAGVPRK-P--GMT---RDDLFNIN----AGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-~--g~~---r~~~~~~N----~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      .-|++|..||.... +  ..+   ....+..|    ....+.+++.+++.. ..+.||+++......            +
T Consensus        89 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~  156 (257)
T d1xg5a_          89 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR------------V  156 (257)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS------------C
T ss_pred             CCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcC------------C
Confidence            78999999886432 1  111   22334444    455566777777665 467888876544321            0


Q ss_pred             CCCC--CEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          181 YDPK--KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       181 ~~~~--kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .|..  -.++.+.-.-..|-+.+|..|...+..|++.++.
T Consensus       157 ~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~  196 (257)
T d1xg5a_         157 LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCIS  196 (257)
T ss_dssp             CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEe
Confidence            1110  1122222223345677777775455677666654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00032  Score=63.89  Aligned_cols=110  Identities=19%  Similarity=0.119  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------chhHHHHHhcCCCCCeEEEEeCC-CC---hhhhhCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------TPGVTADISHMDTGAVVRGFLGQ-PQ---LENALTG  112 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--------~~g~~~dl~~~~~~~~v~~~~~t-~d---~~~al~~  112 (356)
                      .||.|+||+|++|++++..|+..|.  +|+.+|...        .......+.... ..++..+... +|   +++++.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeeccccccccccccc
Confidence            3899999999999999999999887  889998532        111111111111 1233332211 23   3444555


Q ss_pred             Cc--EEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 018433          113 MD--LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATV  157 (356)
Q Consensus       113 aD--iVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  157 (356)
                      .|  +|+.+|+.+....  ....+.+..|+.....+...+++++.+-++
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i  128 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV  128 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccc
Confidence            55  5666776542111  124566788999999999999988755433

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.24  E-value=0.00034  Score=59.00  Aligned_cols=83  Identities=16%  Similarity=0.179  Sum_probs=56.7

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcE
Q 018433           39 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDL  115 (356)
Q Consensus        39 ~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDi  115 (356)
                      ....+.++|.|+||+|.+|..++..|++.|.  +|+++|++.  ....+..+........... .....+.++++.++|+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDi   95 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHF   95 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCe
Confidence            3445667999999999999999999999997  999999986  2233333322111111111 1122456678899999


Q ss_pred             EEEcCCCC
Q 018433          116 VIIPAGVP  123 (356)
Q Consensus       116 VIi~ag~~  123 (356)
                      ||.++|.+
T Consensus        96 lin~Ag~g  103 (191)
T d1luaa1          96 VFTAGAIG  103 (191)
T ss_dssp             EEECCCTT
T ss_pred             eeecCccc
Confidence            99998864

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.14  E-value=0.00017  Score=63.55  Aligned_cols=99  Identities=17%  Similarity=0.166  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV  122 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  122 (356)
                      |||.|+||+|++|++++..|...+   +++.+|..... ...|+.+            ..++++.++  +.|+||.+||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~~------------~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCCC------------HHHHHHHHHHcCCCEEEEeccc
Confidence            899999999999999998887666   45666765411 0011111            012334454  45999999985


Q ss_pred             CCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          123 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       123 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ...  ...........|......+....++.+  .+++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~s  103 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYS  103 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhccc--ccccccc
Confidence            421  123344556788888888888887654  4455543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.12  E-value=0.00063  Score=57.33  Aligned_cols=110  Identities=15%  Similarity=0.023  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEE-EeCCCChhhhhCCCcEEEEcCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      +.+|.|+||+|++|++++..|+..+....++.+++++  ....++....  ..+.. .....++.++++++|.||.+++.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~--~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA--QGKEKIGGEA--DVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCH--HHHHHTTCCT--TEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCH--HHHHhccCCc--EEEEeeeccccccccccccceeeEEEEee
Confidence            5699999999999999999999988633455555443  1112222111  11111 00113456788999999998764


Q ss_pred             CCCC---------------CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 018433          123 PRKP---------------GMTRDDLFNINAGIVRTLCEGIAKCCPNATV  157 (356)
Q Consensus       123 ~~~~---------------g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~v  157 (356)
                      ....               ..........|....+.++............
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (252)
T d2q46a1          79 VPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIV  128 (252)
T ss_dssp             CCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEE
T ss_pred             ccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccc
Confidence            3110               0112333456677777777777766654433

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.08  E-value=0.0003  Score=61.65  Aligned_cols=90  Identities=21%  Similarity=0.201  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag  121 (356)
                      .|||.|+||+|++|++++..|..+|+  +|+.+|++..     |+.+.            .+.++.++  +.|+||.+++
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d~------------~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITNV------------LAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTCH------------HHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCCH------------HHHHHHHHHcCCCEEEeecc
Confidence            48999999999999999999998888  9999998641     22111            11234443  6799999887


Q ss_pred             CCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhC
Q 018433          122 VPRKPG--MTRDDLFNINAGIVRTLCEGIAKCC  152 (356)
Q Consensus       122 ~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~  152 (356)
                      ......  .........|......+........
T Consensus        62 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~   94 (281)
T d1vl0a_          62 HTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG   94 (281)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             ccccccccccchhhccccccccccccccccccc
Confidence            542111  1233445566666666666665543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.04  E-value=0.00055  Score=56.67  Aligned_cols=82  Identities=21%  Similarity=0.236  Sum_probs=56.5

Q ss_pred             ccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEE
Q 018433           38 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        38 ~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      ...+.+|-||+|||| |.+|.+-+...+.-|-  ++..+|.+. ......+....  ..... ......+++.+++||+|
T Consensus        26 g~~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~--~~~~~-~~~~~~l~~~~~~aDiv   99 (168)
T d1pjca1          26 GVPGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS--RVELL-YSNSAEIETAVAEADLL   99 (168)
T ss_dssp             CBTTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG--GSEEE-ECCHHHHHHHHHTCSEE
T ss_pred             CCCCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhcc--cceee-hhhhhhHHHhhccCcEE
Confidence            445678999999999 9999998888876665  999999986 22221111111  12222 22234678899999999


Q ss_pred             EEcCCCCCC
Q 018433          117 IIPAGVPRK  125 (356)
Q Consensus       117 Ii~ag~~~~  125 (356)
                      |-++-.|.+
T Consensus       100 I~aalipG~  108 (168)
T d1pjca1         100 IGAVLVPGR  108 (168)
T ss_dssp             EECCCCTTS
T ss_pred             EEeeecCCc
Confidence            999887644

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.00  E-value=0.00071  Score=53.22  Aligned_cols=97  Identities=13%  Similarity=0.098  Sum_probs=58.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC--CChhhh-hCCCcEEEEcCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENA-LTGMDLVIIPAGV  122 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t--~d~~~a-l~~aDiVIi~ag~  122 (356)
                      |+.|+|+ |.+|..++..|...|.  +++++|.++  ..+.++.+..  ..+-.-..+  .-++++ +.+||.||++.+.
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~--~~~~~~~~~~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~   74 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINE--EKVNAYASYA--THAVIANATEENELLSLGIRNFEYVIVAIGA   74 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCH--HHHHHTTTTC--SEEEECCTTCTTHHHHHTGGGCSEEEECCCS
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcH--HHHHHHHHhC--CcceeeecccchhhhccCCccccEEEEEcCc
Confidence            7899999 9999999999999998  899999986  1222333322  122111111  123333 7899998887532


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV  164 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv  164 (356)
                      .           ..|.    .++..+.+..|...++.-+ ++.
T Consensus        75 ~-----------~~~~----~~~~~~~~~~~~~~iiar~~~~~  102 (134)
T d2hmva1          75 N-----------IQAS----TLTTLLLKELDIPNIWVKAQNYY  102 (134)
T ss_dssp             C-----------HHHH----HHHHHHHHHTTCSEEEEECCSHH
T ss_pred             h-----------HHhH----HHHHHHHHHcCCCcEEeecccHh
Confidence            2           1221    2334455566766666554 443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.99  E-value=0.00052  Score=60.58  Aligned_cols=77  Identities=16%  Similarity=0.067  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch-hHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP-GVTADISHMDTGAVVRGFLG----QPQLENALTGMDL  115 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~-g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDi  115 (356)
                      +++||.|+||+|++|++++..|+..|+  +|+.++++.  .. .....+.... ...++...+    ..++.+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~v~~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhc-cCCcEEEEeecccchhhhhhccCcch
Confidence            457999999999999999999999887  888888765  11 1111111111 111222211    1234567899999


Q ss_pred             EEEcCCC
Q 018433          116 VIIPAGV  122 (356)
Q Consensus       116 VIi~ag~  122 (356)
                      ++..++.
T Consensus        79 ~~~~~~~   85 (312)
T d1qyda_          79 VISALAG   85 (312)
T ss_dssp             EEECCCC
T ss_pred             hhhhhhh
Confidence            9997653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00064  Score=59.53  Aligned_cols=154  Identities=16%  Similarity=0.181  Sum_probs=88.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCC------hhhhhCCCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ------LENALTGMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d------~~~al~~aDi  115 (356)
                      .+++.|+||++-+|..++..|+..|.  +|++.|+++  +...+.++....   .+..  .-+|      .-+.+..-|+
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~---~~~~--Dv~d~~~v~~~~~~~g~iDi   79 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIE---PVCV--DLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEEC--CTTCHHHHHHHHTTCCCCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCe---EEEE--eCCCHHHHHHHHHHhCCceE
Confidence            45899999999999999999999998  999999986  333333332211   1110  0112      1223568899


Q ss_pred             EEEcCCCCCCCC---Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433          116 VIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       116 VIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k  185 (356)
                      +|..||......   .+   ....+..|+.    ..+..++.+.+....+.|++++.-....            +.|..-
T Consensus        80 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~~~~~~  147 (244)
T d1pr9a_          80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------AVTNHS  147 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBH
T ss_pred             EEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc------------cccchh
Confidence            999988753221   12   2233444444    4555666555555667777776433211            122222


Q ss_pred             EEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          186 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       186 viG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .++.+.-.-..+-+.+|..++  +..|++-.+-
T Consensus       148 ~Y~asKaal~~lt~~lA~el~--~~gIrvN~I~  178 (244)
T d1pr9a_         148 VYCSTKGALDMLTKVMALELG--PHKIRVNAVN  178 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             hhhhhHHHHHHHHHHHHHHhC--CCcEEEEEEe
Confidence            233332233456677888774  5566555553

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.87  E-value=0.00049  Score=56.38  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=35.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH   90 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~   90 (356)
                      |||+|||++|.+|.++|..|+..|.  +|++.++++  +...+.++..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e~~~~l~~~i~~   46 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRR   46 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh
Confidence            8999996669999999999999999  999999986  3444444443

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.87  E-value=0.00066  Score=59.32  Aligned_cols=76  Identities=18%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c---hhHHHHHhcCCCCCeEEEEeC----CCChhhhhCCCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVTADISHMDTGAVVRGFLG----QPQLENALTGMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~---~g~~~dl~~~~~~~~v~~~~~----t~d~~~al~~aDi  115 (356)
                      ++||.|+||+|++|++++..|+..|.  +|+.++++. .   ......+.... ...+....+    ..+..++++++|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhc-cCCcEEEEeecccchhhhhhhhhcee
Confidence            45999999999999999999999987  899999876 1   11111111111 111222111    1234467899999


Q ss_pred             EEEcCCC
Q 018433          116 VIIPAGV  122 (356)
Q Consensus       116 VIi~ag~  122 (356)
                      |+..++.
T Consensus        80 vi~~~~~   86 (307)
T d1qyca_          80 VISTVGS   86 (307)
T ss_dssp             EEECCCG
T ss_pred             eeecccc
Confidence            9988753

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.75  E-value=0.0077  Score=52.57  Aligned_cols=155  Identities=19%  Similarity=0.243  Sum_probs=88.5

Q ss_pred             eE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhhC
Q 018433           46 KV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT  111 (356)
Q Consensus        46 KI-~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  111 (356)
                      || .|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++.+..  .++..+.. -+|.          .+.+-
T Consensus         2 KValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            76 6779988999999999999998  899999987  444455565432  12222211 1221          12346


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      .-|++|..||......   .+   ....+..|+.    ..+...+.+.+....+.|++++......            +.
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~  145 (255)
T d1gega_          78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------GN  145 (255)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------CC
T ss_pred             CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc------------cC
Confidence            7999999998643211   12   2334455554    4445556666676778787776443211            11


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      |..-.++.+.-.-..+-+.+|..++  +..|++-.+-
T Consensus       146 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  180 (255)
T d1gega_         146 PELAVYSSSKFAVRGLTQTAARDLA--PLGITVNGYC  180 (255)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccccchhCHHHHHhhHHHHHHHhh--hhCcEEEEEe
Confidence            1111122222223346677777774  5556544443

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.70  E-value=0.0076  Score=54.43  Aligned_cols=104  Identities=14%  Similarity=0.144  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-CC----hhhhhCCCcEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLVI  117 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-~d----~~~al~~aDiVI  117 (356)
                      ++++|+|+||+|++|++++..|+..|+  +|+.+-++........+...   ..+..+.+. .|    +..+++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~---~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhccc---CCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            356999999999999999999999887  77777665422222233322   223332221 22    345789999988


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ......   .       ..+....+.++.+..+.+-.-.++..|
T Consensus        77 ~~~~~~---~-------~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          77 INTTSQ---A-------GDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             ECCCST---T-------SCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eecccc---c-------chhhhhhhHHHHHHHHhCCCceEEEee
Confidence            864321   1       123333455666666665333444444

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.002  Score=56.25  Aligned_cols=154  Identities=17%  Similarity=0.195  Sum_probs=86.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCCh---h---hhhCCCcE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL---E---NALTGMDL  115 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~---~---~al~~aDi  115 (356)
                      .+++.|+||++-+|..++..|+..|.  .|++.|+++  +.....++....   .+..  .-+|.   +   +.+..-|+
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~---~~~~--Dv~~~~~v~~~~~~~g~iDi   77 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE---PVCV--DLGDWDATEKALGGIGPVDL   77 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEEC--CTTCHHHHHHHHTTCCCCSE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe---EEEE--eCCCHHHHHHHHHHcCCCeE
Confidence            35789999999999999999999998  999999876  233333332211   1110  11221   1   22457899


Q ss_pred             EEEcCCCCCCCC---Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433          116 VIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       116 VIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k  185 (356)
                      +|..||......   .+   ....+..|+.    ..+...+.+.+....+.+|+++......            +.|..-
T Consensus        78 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~~~~  145 (242)
T d1cyda_          78 LVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV------------TFPNLI  145 (242)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBH
T ss_pred             EEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc------------cCCccc
Confidence            999998653211   12   2233444544    4444555555555567777776443211            122211


Q ss_pred             EEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          186 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       186 viG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .++.+.-.-..+-+.+|..++  +..|++-.+-
T Consensus       146 ~Y~asKaal~~lt~~lA~e~~--~~gIrvN~I~  176 (242)
T d1cyda_         146 TYSSTKGAMTMLTKAMAMELG--PHKIRVNSVN  176 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccchHHHHHHHHHHHHHHhC--ccCeecccCC
Confidence            223332223346677787764  5556555554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.63  E-value=0.0037  Score=52.17  Aligned_cols=88  Identities=22%  Similarity=0.195  Sum_probs=56.3

Q ss_pred             hhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCC------eEE---E-----
Q 018433           35 KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGA------VVR---G-----   99 (356)
Q Consensus        35 ~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~------~v~---~-----   99 (356)
                      .-++.++.+|-||.|||| |.+|.+-+.....-|-  .+..+|++. ......++.......      ...   .     
T Consensus        20 l~~~~g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~   96 (183)
T d1l7da1          20 MMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEM   96 (183)
T ss_dssp             EEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC------------------
T ss_pred             cccccCCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhc
Confidence            456788899999999999 9999988887775555  999999987 333333332110000      000   0     


Q ss_pred             ---E--eCCCChhhhhCCCcEEEEcCCCCCC
Q 018433          100 ---F--LGQPQLENALTGMDLVIIPAGVPRK  125 (356)
Q Consensus       100 ---~--~~t~d~~~al~~aDiVIi~ag~~~~  125 (356)
                         +  .....+.+.+++||+||-++-.|.+
T Consensus        97 s~~~~~~~~~~l~~~l~~aDlVI~talipG~  127 (183)
T d1l7da1          97 GEEFRKKQAEAVLKELVKTDIAITTALIPGK  127 (183)
T ss_dssp             -----CCHHHHHHHHHTTCSEEEECCCCTTS
T ss_pred             CHHHHHHHHHHHHHHHHhhhhheeeeecCCc
Confidence               0  0001234568999999999877643

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.59  E-value=0.004  Score=55.80  Aligned_cols=172  Identities=13%  Similarity=0.027  Sum_probs=93.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chh---HHHHHhcCCCCCeEEEEeC-CCCh---hhhh--C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPG---VTADISHMDTGAVVRGFLG-QPQL---ENAL--T  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----~~g---~~~dl~~~~~~~~v~~~~~-t~d~---~~al--~  111 (356)
                      .|+.|+||+|++|++++..|+..|+  +|+.+|+..    ...   ...+..... ...+....+ .++.   +.++  .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Di~~~~~~~~~~~~~   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVN-KALMKLHYADLTDASSLRRWIDVI   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhcc-ccceEEEEccccCHHHHHHHHhhh
Confidence            3889999999999999999999998  999999743    110   001111111 122333211 1232   2223  4


Q ss_pred             CCcEEEEcCCCCCCCC--CcHHHHHHHHHHHHHHHHHHHHHhC----CCcEEEEecCC-CCccHHHHHHHHHHhCCCCCC
Q 018433          112 GMDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLISNP-VNSTVPIAAEVFKKAGTYDPK  184 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~viv~tNP-v~~~t~~~~~~~~~~~~~~~~  184 (356)
                      +.|+||.+|+......  ..-......|......+...+++.+    ...+++..+.. +.....   ....+..-+.|.
T Consensus        79 ~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~---~~~~E~~~~~p~  155 (339)
T d1n7ha_          79 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP---PPQSETTPFHPR  155 (339)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC---SSBCTTSCCCCC
T ss_pred             ccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC---CCCCCCCCCCCc
Confidence            6799999987642211  1223456777777777777766543    23334433211 100000   000111223355


Q ss_pred             CEEEechhhHHHHHHHHHHHhCCCCCCCc-ccEEecccC
Q 018433          185 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  222 (356)
Q Consensus       185 kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~  222 (356)
                      ...|.+.+...++-...++..+++...++ ..|+|.++.
T Consensus       156 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         156 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            56777666666666667778887655553 457786543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.55  E-value=0.0053  Score=49.06  Aligned_cols=79  Identities=18%  Similarity=0.264  Sum_probs=54.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      .+||+|||+.|.+|..++..|...|+  ++..+|++...                      +.++.+.++|++++..-..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~~~~~   64 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVPIN   64 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSCGG
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhccccccccchh
Confidence            45999999449999999999999999  99999986411                      1134568899998875321


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                                      .+.++...+..+. ++.+++-++.
T Consensus        65 ----------------~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          65 ----------------LTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             ----------------GHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             ----------------hheeeeecccccccCCceEEEecc
Confidence                            1334444455554 5666666653

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.54  E-value=0.01  Score=52.01  Aligned_cols=157  Identities=17%  Similarity=0.126  Sum_probs=86.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  111 (356)
                      +.+.|+||++-+|..++..|+..|.  .|++.|++.  ++....++........+..+.. -+|.          .+.+-
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4678889999999999999999998  999999986  3333333433221222222211 1222          12245


Q ss_pred             CCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 GMDLVIIPAGVPRKPG----MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      .-|++|..||.....+    .+   ....+..|+.-    .+...+.+++. ..+.||+++......            +
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~------------~  149 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ-GSGMVVNTASVGGIR------------G  149 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTS------------B
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh-cCCCCcccccHhhcc------------C
Confidence            7999999998532221    22   22344555544    44444455443 466777776433221            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .|..-.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       150 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~i~  185 (258)
T d1iy8a_         150 IGNQSGYAAAKHGVVGLTRNSAVEYG--RYGIRINAIA  185 (258)
T ss_dssp             CSSBHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCceEEEEe
Confidence            22211222322223346677788774  5566655553

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.53  E-value=0.015  Score=50.54  Aligned_cols=156  Identities=15%  Similarity=0.059  Sum_probs=87.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  111 (356)
                      +.+.|+||++-+|..++..|+..|.  .|++.|+++  ++..+.++...   ..+..+.. -+|.          .+.+-
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4678889999999999999999998  899999976  33333344321   12222211 1221          12345


Q ss_pred             CCcEEEEcCCCCCCC---CCcH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      .-|++|..||.....   ..+.   ...+..|+.    ..+..++.+.+....+.||+++......            +.
T Consensus        82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~------------~~  149 (251)
T d1zk4a1          82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV------------GD  149 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS------------CC
T ss_pred             CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec------------cC
Confidence            789999998864321   1222   234445544    4555566666555556888876543321            12


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      |..-.++.+.-....|-+.+|..+...+..|++-.+
T Consensus       150 ~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I  185 (251)
T d1zk4a1         150 PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTV  185 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEE
Confidence            221122332222234556666654444566655444

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.013  Score=51.01  Aligned_cols=106  Identities=8%  Similarity=0.048  Sum_probs=66.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCC---ChhhhhCCCcEEEEcCCCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP---QLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~---d~~~al~~aDiVIi~ag~~  123 (356)
                      |.|+||+|++|++++..|+..|. .+|+.+|.-........+.+... ..........   .....+.++++|+..|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNI-ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCC-SEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccch-hhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999998874 27888884331111122222211 1111100000   0012457889999988766


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPN  154 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~  154 (356)
                      .............|......+.....+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5555566666777788888888888877644

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.52  E-value=0.0048  Score=49.83  Aligned_cols=70  Identities=17%  Similarity=0.107  Sum_probs=47.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC---CChhhhhCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ---PQLENALTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t---~d~~~al~~aDiVIi~a  120 (356)
                      +||.|+|| |.+|+++|..|...|+  +|+++|++..  .+.++..... .........   ....+.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~--~a~~l~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQ-HSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHH--HHHHHHTTCT-TEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChH--HHHHHHhccc-ccccccccccchhhhHhhhhccceeEeec
Confidence            59999999 9999999999999988  9999999752  3334444321 111111111   23345678889888764

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.44  E-value=0.027  Score=49.26  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=89.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCCh---h-------hhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL---E-------NAL  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d~---~-------~al  110 (356)
                      +.+.|+||++-+|..++..|+..|.  +|++.|++.   ++..+.++....  .++..+.. -+|.   +       +.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4678889999999999999999998  999999875   333344444432  23222211 1221   1       223


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ..-|++|..+|......   .+   ....+..|+    ...+..++.+.+......|+++|......            +
T Consensus        84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------------~  151 (261)
T d1geea_          84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------P  151 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------------C
T ss_pred             CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc------------c
Confidence            47899999998753211   22   223344554    45566677776665566677766443321            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .|..-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       152 ~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~I~  187 (261)
T d1geea_         152 WPLFVHYAASKGGMKLMTETLALEYA--PKGIRVNNIG  187 (261)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CccccccccCCccchhhHHHHHHHhh--hhCcEEEEEe
Confidence            22221233332233456677888774  5566555553

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.41  E-value=0.017  Score=50.31  Aligned_cols=152  Identities=14%  Similarity=0.153  Sum_probs=87.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh---h-------hhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---E-------NALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~---~-------~al~  111 (356)
                      +.+.|+||++-+|..+|..|+..|.  +|++.|++.  ++..+.++..     ....+. .-+|.   +       +.+-
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~Dvt~~~~v~~~~~~~~~~~g   78 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGP-----AACAIALDVTDQASIDRCVAELLDRWG   78 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            4688999999999999999999997  999999986  3444444422     111111 11221   1       2235


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      .-|++|..+|......   .+   ....+..|+    ...+..++.+.+....+.||++|......            +.
T Consensus        79 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------------~~  146 (256)
T d1k2wa_          79 SIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR------------GE  146 (256)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------CC
T ss_pred             CccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc------------cc
Confidence            7899999998643211   12   233455555    44455566666665667888876443221            12


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      |..-.++.+.-....|-+.+|..++  +..|++-.+
T Consensus       147 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V  180 (256)
T d1k2wa_         147 ALVGVYCATKAAVISLTQSAGLNLI--RHGINVNAI  180 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ccccchhhhhhHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            2111222222223346677788774  455654444

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.37  E-value=0.0029  Score=54.75  Aligned_cols=111  Identities=15%  Similarity=0.140  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCC---ChhhhhCCCcEEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP---QLENALTGMDLVII  118 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~---d~~~al~~aDiVIi  118 (356)
                      .+.+++.|+||++-+|..++..|+..|.  +|++.|+++.  .   +.+..  .......-+.   ...+.+..-|++|.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~--~---l~~~~--~~~~~~Dv~~~~~~~~~~~g~iD~lVn   72 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--L---LKRSG--HRYVVCDLRKDLDLLFEKVKEVDILVL   72 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--H---HHHTC--SEEEECCTTTCHHHHHHHSCCCSEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH--H---HHhcC--CcEEEcchHHHHHHHHHHhCCCcEEEe
Confidence            4567899999999999999999999998  9999998751  1   11111  0111000011   23455688999999


Q ss_pred             cCCCCCCCC---Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecC
Q 018433          119 PAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       119 ~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      .||.+....   .+   ....+..|+.    ..+...+.+++. ..+.+|+++.
T Consensus        73 nAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~G~ii~i~S  125 (234)
T d1o5ia_          73 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITS  125 (234)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             cccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc-cccccccccc
Confidence            998764321   22   2233444444    455556666554 4566666653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.34  E-value=0.0033  Score=51.33  Aligned_cols=107  Identities=17%  Similarity=0.207  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..+..||.|||+ |.+|..++..|...+. .++.++.+...+  +.++.... ......   -+++.+++.++|+||.+.
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~k--a~~l~~~~-~~~~~~---~~~~~~~l~~~Divi~at   92 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYER--AVELARDL-GGEAVR---FDELVDHLARSDVVVSAT   92 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHHH--HHHHHHHH-TCEECC---GGGHHHHHHTCSEEEECC
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHHH--HHHHHHhh-hccccc---chhHHHHhccCCEEEEec
Confidence            345679999999 9999999999988764 488999876422  22222211 112211   257788999999999987


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CCcEEEEecCCCCcc
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNST  167 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~--p~a~viv~tNPv~~~  167 (356)
                      +.+.. =.++ +          .+-..+.+-.  ..-++|=.+.|-|+-
T Consensus        93 ss~~~-ii~~-~----------~i~~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          93 AAPHP-VIHV-D----------DVREALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             SSSSC-CBCH-H----------HHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             CCCCc-cccH-h----------hhHHHHHhcccCCCeEEEeecCCCCcC
Confidence            65421 1111 1          1112333322  234777789997765

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0016  Score=56.86  Aligned_cols=155  Identities=16%  Similarity=0.153  Sum_probs=85.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCC-----CChhhhhCCCcEEEEc
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVIIP  119 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t-----~d~~~al~~aDiVIi~  119 (356)
                      +.+.|+||++.+|..++..|+..|.  +|++.|+++..  ..++.+.. ..........     ....+.+..-|++|..
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~--l~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~   81 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP-GIQTRVLDVTKKKQIDQFANEVERLDVLFNV   81 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST-TEEEEECCTTCHHHHHHHHHHCSCCSEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHH--HHHHHhcc-CCceeeeeccccccccccccccccceeEEec
Confidence            4677889999999999999999997  99999997611  11122211 1111111000     1122344689999999


Q ss_pred             CCCCCCCC---CcH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe
Q 018433          120 AGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  189 (356)
Q Consensus       120 ag~~~~~g---~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~  189 (356)
                      +|.+....   .+.   ...+..|+    ...+.+.+.+.+. +.+.|++++......           .+++..-.++.
T Consensus        82 ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~~-----------~~~~~~~~Y~~  149 (245)
T d2ag5a1          82 AGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSV-----------KGVVNRCVYST  149 (245)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT-----------BCCTTBHHHHH
T ss_pred             ccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeechhhcc-----------CCccchhHHHH
Confidence            98754321   222   22334444    3444455555443 567777776554322           12222222333


Q ss_pred             chhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          190 TMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       190 t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      +.-.-..+-+.+|..++  +..|++-.+-
T Consensus       150 sKaal~~l~r~lA~e~~--~~gIrvN~I~  176 (245)
T d2ag5a1         150 TKAAVIGLTKSVAADFI--QQGIRCNCVC  176 (245)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            32233456778888875  5566555443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.31  E-value=0.0064  Score=46.31  Aligned_cols=70  Identities=17%  Similarity=0.144  Sum_probs=48.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ..||.|||+ |.+|..-+..|+..|-  ++.+++....... ..+.+..   .++.....-+ ++.+.++++|+.+.+
T Consensus        12 ~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~-~~~~~~~---~i~~~~~~~~-~~dl~~~~lv~~at~   81 (113)
T d1pjqa1          12 DRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQF-TVWANEG---MLTLVEGPFD-ETLLDSCWLAIAATD   81 (113)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHH-HHHHTTT---SCEEEESSCC-GGGGTTCSEEEECCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHH-HHHHhcC---CceeeccCCC-HHHhCCCcEEeecCC
Confidence            359999999 9999999999998887  8899997653322 2233321   2222222222 467999999998754

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.31  E-value=0.014  Score=48.64  Aligned_cols=95  Identities=18%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|+|+|. |.+|..++..+..-+.  ++..+|... ......+..       +..   ..++++.+++||+|++..
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~~~l~~sD~v~~~~  108 (188)
T d2naca1          42 LEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNC  108 (188)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECS
T ss_pred             ccccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHHHHHHhccchhhcc
Confidence            45679999999 9999999998876566  899999865 222222111       111   246788999999999975


Q ss_pred             CC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          121 GV-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       121 g~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      .. +...++-..              +.+....+++++||++--
T Consensus       109 plt~~T~~li~~--------------~~l~~mk~ga~lIN~aRG  138 (188)
T d2naca1         109 PLHPETEHMIND--------------ETLKLFKRGAYIVNTARG  138 (188)
T ss_dssp             CCCTTTTTCBSH--------------HHHTTSCTTEEEEECSCG
T ss_pred             cccccchhhhHH--------------HHHHhCCCCCEEEecCch
Confidence            32 222232111              122333478899998733

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.038  Score=47.87  Aligned_cols=117  Identities=16%  Similarity=0.115  Sum_probs=72.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCChh----------hhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE----------NAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~~----------~al  110 (356)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|++.  +.....++........+..+.. -+|.+          +.+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            34678889999999999999999998  999999986  3334445544321223332211 12221          223


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHH----HHHHHHHHHHHHhC--CCcEEEEecCCC
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINA----GIVRTLCEGIAKCC--PNATVNLISNPV  164 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~----~i~~~i~~~i~~~~--p~a~viv~tNPv  164 (356)
                      -.-|++|..||.....  +..+.+..|+    ...+...+.+.+..  ..+.|++++...
T Consensus        81 G~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~  138 (254)
T d2gdza1          81 GRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  138 (254)
T ss_dssp             SCCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CCcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence            5789999999875332  3334444444    44555566665443  347788876443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.28  E-value=0.035  Score=48.16  Aligned_cols=114  Identities=14%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al  110 (356)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|+++  +...+.++.+.. ..++..+.. -+|.          .+.+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45788999999999999999999998  999999986  333344443321 122222211 1121          1224


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEec
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~t  161 (356)
                      ..-|++|..||......   .+   ....+..|+..    .+..++.+++. ..+.+|+++
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~i~  141 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIG  141 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-ccccccccc
Confidence            57899999998753221   12   23344555544    44445555433 355666664

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.27  E-value=0.052  Score=47.35  Aligned_cols=158  Identities=16%  Similarity=0.106  Sum_probs=90.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCC----------hhh
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ----------LEN  108 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d----------~~~  108 (356)
                      +.+++.|+||++-+|..++..|+..|.  +|++.|.+.   ++..+.++....  ..+..+. ..+|          ..+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999876   233333343322  1222211 1122          123


Q ss_pred             hhCCCcEEEEcCCCCCCCC---C---cHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          109 ALTGMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g---~---~r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      .+-.-|++|..+|......   .   +....+..|+.....+.+.+..+- .++.+++++.-....           ...
T Consensus        93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~-----------~~~  161 (272)
T d1g0oa_          93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA-----------KAV  161 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC-----------SSC
T ss_pred             HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc-----------ccc
Confidence            4467899999988643221   1   233455667766666666666654 456666664332211           111


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +..=.++.+.-.-..+-+.+|..++  +..|++-.+
T Consensus       162 ~~~~~Y~asKaal~~ltk~lA~e~~--~~gIrVN~I  195 (272)
T d1g0oa_         162 PKHAVYSGSKGAIETFARCMAIDMA--DKKITVNVV  195 (272)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhc--hhCeEEEEE
Confidence            1111233332223346777888875  455644444

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.27  E-value=0.02  Score=49.92  Aligned_cols=156  Identities=13%  Similarity=0.150  Sum_probs=89.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al  110 (356)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  ++....++....  .++..+.. -+|.          .+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34788889999999999999999998  999999986  444445555432  22322211 1221          2234


Q ss_pred             CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      -.-|++|..+|.....+    .+   ....+..|+..    .+...+.+.+. ..+.||+++.....            .
T Consensus        81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~~------------~  147 (260)
T d1zema1          81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAGV------------K  147 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH------------S
T ss_pred             CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhhc------------c
Confidence            57999999988643222    22   23344555544    44445554443 56778877643211            1


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      +.|..-.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       148 ~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  184 (260)
T d1zema1         148 GPPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAIS  184 (260)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEec
Confidence            222222233333233456777888874  5566555443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.24  E-value=0.013  Score=51.04  Aligned_cols=81  Identities=15%  Similarity=0.072  Sum_probs=52.9

Q ss_pred             CCCCCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCC---------CChhh
Q 018433           41 GAAGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ---------PQLEN  108 (356)
Q Consensus        41 ~~~~~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t---------~d~~~  108 (356)
                      +-+.+++.|+||+|  -+|.++|..|+..|.  +|++.|+++ +...+.++........+.....+         .+..+
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHH
Confidence            34567899999877  499999999999998  999999987 44444444433221222211111         11233


Q ss_pred             hhCCCcEEEEcCCCC
Q 018433          109 ALTGMDLVIIPAGVP  123 (356)
Q Consensus       109 al~~aDiVIi~ag~~  123 (356)
                      .+...|++|..+|..
T Consensus        80 ~~g~id~lV~nag~~   94 (274)
T d2pd4a1          80 DLGSLDFIVHSVAFA   94 (274)
T ss_dssp             HTSCEEEEEECCCCC
T ss_pred             HcCCCCeEEeecccc
Confidence            446889999988764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0097  Score=52.25  Aligned_cols=115  Identities=16%  Similarity=0.177  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC----------hhhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~al  110 (356)
                      .+++.|+||++-+|.++|..|+..|.  +|++.|+++  ++....++.... ...+..... ..+          ..+.+
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            34899999999999999999999997  999999987  333333433221 122222211 111          11223


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      ...|+++..+|.....   ..+   -...+..|.    ...+.+.+.+++.  ++.+++++..
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS~  151 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSL  151 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEG
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEeccc
Confidence            5789999887753211   112   122344444    4455555555543  5667776543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.22  E-value=0.019  Score=48.20  Aligned_cols=94  Identities=20%  Similarity=0.284  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...++|+|||. |.+|+.++..+..-|.  ++..+|............       +..   ..++++.++.||+|++...
T Consensus        47 L~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~~---~~~l~~ll~~sD~i~~~~p  113 (193)
T d1mx3a1          47 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHCG  113 (193)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             eeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------ccc---ccchhhccccCCEEEEeec
Confidence            34569999999 9999999999876565  999999865222211111       111   2468888999999999753


Q ss_pred             C-CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          122 V-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       122 ~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      . +...++-..+              .+....|++++||++=
T Consensus       114 lt~~T~~li~~~--------------~l~~mk~~a~lIN~sR  141 (193)
T d1mx3a1         114 LNEHNHHLINDF--------------TVKQMRQGAFLVNTAR  141 (193)
T ss_dssp             CCTTCTTSBSHH--------------HHTTSCTTEEEEECSC
T ss_pred             ccccchhhhhHH--------------HHhccCCCCeEEecCC
Confidence            2 2222321111              1233447899999973

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.22  E-value=0.028  Score=48.89  Aligned_cols=156  Identities=13%  Similarity=0.095  Sum_probs=86.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCC---h-------hhhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---L-------ENAL  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~al  110 (356)
                      +.+.|+||++-+|..+|..|+..|.  .|++.|+++   ++....++.... ...+..+.. -+|   .       .+.+
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4677889988999999999999998  999999975   223333332211 112221110 112   1       1223


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      -.-|++|..||......   .+   ....+..|+    ...+...+.+++. ..+.||+++......            +
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Iv~isS~~~~~------------~  148 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASAHGLV------------A  148 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------C
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhc-CCceEeeccccccee------------c
Confidence            57899999998753221   11   233445554    4455566666654 357777776544322            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .|..-.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       149 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  184 (260)
T d1x1ta1         149 SANKSAYVAAKHGVVGFTKVTALETA--GQGITANAIC  184 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             cCCcchhhhhhhhHHHhHHHHHHHhc--hhCcEEEEEe
Confidence            22111223332233346677888875  5566554443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0029  Score=46.67  Aligned_cols=72  Identities=19%  Similarity=0.274  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      ..||+|+|. |..|.++|..|...+.  ++.++|.+.......++.+   ...+..  +..+ ...+.+.|+||++-|.|
T Consensus         5 ~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~d~vi~SPGi~   75 (93)
T d2jfga1           5 GKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPE---AVERHT--GSLN-DEWLMAADLIVASPGIA   75 (93)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCT---TSCEEE--SBCC-HHHHHHCSEEEECTTSC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhh---ccceee--cccc-hhhhccCCEEEECCCCC
Confidence            348999999 9999999999999887  8899998662111111221   122222  1222 46689999999998887


Q ss_pred             C
Q 018433          124 R  124 (356)
Q Consensus       124 ~  124 (356)
                      .
T Consensus        76 ~   76 (93)
T d2jfga1          76 L   76 (93)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.037  Score=48.12  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=88.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al  110 (356)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++....  .++..+.. -+|.          .+.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34788999999999999999999998  999999876  344444555432  22222211 1222          2234


Q ss_pred             CCCcEEEEcCCCCCCC--CCc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          111 TGMDLVIIPAGVPRKP--GMT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~--g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ..-|++|..+|.....  ..+   ....+..|+    ...+..++.+.+.. .+.||+++.-....            +.
T Consensus        87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~~------------~~  153 (255)
T d1fmca_          87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAEN------------KN  153 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC------------CC
T ss_pred             CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchhc------------cc
Confidence            6899999999864321  222   223344554    34555666666553 55666665322211            12


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      |..-.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       154 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  188 (255)
T d1fmca_         154 INMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGIA  188 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHhC--ccCeEEEEee
Confidence            2222233332233456677787774  5566554443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.21  E-value=0.013  Score=51.36  Aligned_cols=156  Identities=18%  Similarity=0.182  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---hh-------hhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LE-------NAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~~-------~al  110 (356)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++....   .+..+.. -+|   .+       +.+
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34788889999999999999999997  999999987  344445554321   1222111 122   11       223


Q ss_pred             CCCcEEEEcCCCCC-CC----CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHh
Q 018433          111 TGMDLVIIPAGVPR-KP----GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  178 (356)
Q Consensus       111 ~~aDiVIi~ag~~~-~~----g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~  178 (356)
                      ...|++|..+|... .+    ..+   ....+..|+..    .+...+.+.+. ..+.+|+++.-....           
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~ii~iss~~~~~-----------  148 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA-KKGSIVFTASISSFT-----------  148 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG-TCEEEEEECCGGGTC-----------
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc-CCCCccccccccccc-----------
Confidence            57899999988632 21    122   22334555544    44455555443 356666665443222           


Q ss_pred             CCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          179 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       179 ~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .+.+..-.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       149 ~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  186 (268)
T d2bgka1         149 AGEGVSHVYTATKHAVLGLTTSLCTELG--EYGIRVNCVS  186 (268)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccccccccchhHHHHHhCHHHHHHHhC--hhCeEEEecC
Confidence            1111111233333333456677787774  5556544443

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.18  E-value=0.0017  Score=52.32  Aligned_cols=71  Identities=21%  Similarity=0.316  Sum_probs=46.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      +|||+|+||+|.+|.-+...|.+.+ ...+|.++-.+...|...  ..  ....+....  .+ .+.+.++|+++++.+
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i--~~--~~~~~~~~~--~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM--GF--AESSLRVGD--VD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE--EE--TTEEEECEE--GG-GCCGGGCSEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce--ee--ccccchhcc--ch-hhhhccceEEEecCC
Confidence            6899999999999999999887654 455888887654223211  11  122333321  22 356789999999863

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.13  E-value=0.0058  Score=53.24  Aligned_cols=152  Identities=16%  Similarity=0.193  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al  110 (356)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++....     ..+. .-+|.          .+.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAA-----RYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGE-----EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCcc-----eEEEeecCCHHHHHHHHHHHHHHh
Confidence            34677889999999999999999998  999999987  344444443221     1110 01121          2234


Q ss_pred             CCCcEEEEcCCCCCCC---CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ..-|++|..||.....   ..+   ..+.+..|+..    .+...+.+.+. +.+.||+++......            +
T Consensus        79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~------------~  145 (244)
T d1nffa_          79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGLA------------G  145 (244)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------C
T ss_pred             CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEecccccccc------------c
Confidence            5789999999864321   122   23344555544    34444555443 467788887554322            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .|..-.++.+.-....|-+.+|..++  +..|++-.+
T Consensus       146 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  180 (244)
T d1nffa_         146 TVACHGYTATKFAVRGLTKSTALELG--PSGIRVNSI  180 (244)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhc--ccCEEEEEE
Confidence            22222223332223346677777774  455654444

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.096  Score=45.06  Aligned_cols=118  Identities=19%  Similarity=0.246  Sum_probs=73.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCChh----------hhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~~----------~al~  111 (356)
                      .-+.|+||++-+|..+|..|++.|.  .|++.|++.  ++..+.++....  .++..+. .-+|.+          +.+-
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            4677889988999999999999998  999999987  444555555432  2322221 112321          2345


Q ss_pred             CCcEEEEcCCCCCCCC--Cc----HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 018433          112 GMDLVIIPAGVPRKPG--MT----RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNST  167 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g--~~----r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~  167 (356)
                      ..|++|..+|......  ..    ..+.+..|+    ...+...+.+.+. ..+.|++++......
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~isS~~~~~  148 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAGHV  148 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-CC
T ss_pred             CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEeecchhcC
Confidence            7999999998754322  11    123333443    4555666666654 467888887666543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.13  E-value=0.031  Score=49.00  Aligned_cols=156  Identities=14%  Similarity=0.119  Sum_probs=86.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC-CCeEEEEeC-CCCh----------hhhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLG-QPQL----------ENAL  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~-~~~v~~~~~-t~d~----------~~al  110 (356)
                      +.+.|+||++-+|..++..|+..|.  +|++.|+++  ++....++.+... ...+..+.. -+|.          .+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4688889999999999999999998  999999987  4444555655432 123333221 1221          1223


Q ss_pred             CCCcEEEEcCCCCCCC--C-----Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHH
Q 018433          111 TGMDLVIIPAGVPRKP--G-----MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  176 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~--g-----~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~  176 (356)
                      -.-|++|..+|.....  .     ++   ....+..|+.    ..+...+.+++. ..++|++.|......         
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~Ss~a~~~---------  153 (272)
T d1xkqa_          84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSSIVAGPQ---------  153 (272)
T ss_dssp             SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCGGGSSS---------
T ss_pred             CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccchhcccc---------
Confidence            4789999999864321  1     11   2233445554    445555555543 445555544222111         


Q ss_pred             HhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          177 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       177 ~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                         +.|..-.++.+.-....|-+.+|..++  +..|++-.+
T Consensus       154 ---~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  189 (272)
T d1xkqa_         154 ---AQPDFLYYAIAKAALDQYTRSTAIDLA--KFGIRVNSV  189 (272)
T ss_dssp             ---CCCSSHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             ---CCCCcchhhhHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence               122211233332233446677777774  555655444

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.12  E-value=0.0025  Score=53.08  Aligned_cols=73  Identities=18%  Similarity=0.231  Sum_probs=45.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHH-HHh-cCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DIS-HMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~-dl~-~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++||+|+||+|.+|.-+...|...+.+ ||..+=.+...|... +.. +......+.    ..+.++..+++|+|+++..
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~----~~~~~~~~~~~dvvf~a~p   75 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS----EFDPEKVSKNCDVLFTALP   75 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB----CCCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhcccccc----ccCHhHhccccceEEEccc
Confidence            579999999999999999988877654 666654333223222 221 111111222    2355555678999998753

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.11  E-value=0.033  Score=48.31  Aligned_cols=153  Identities=18%  Similarity=0.228  Sum_probs=87.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhhCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALTG  112 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~~  112 (356)
                      .+.|+||++-+|..++..|+..|.  .|++.|+++  ++..+.++....  .++..+.. -+|.          .+.+..
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            455779999999999999998887  999999976  444455565432  22222211 1222          123368


Q ss_pred             CcEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 018433          113 MDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  182 (356)
Q Consensus       113 aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~  182 (356)
                      -|++|..+|......   .+   ....+..|+    ...+...+.+.+. ..+.||++|......            +.|
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~~------------~~~  154 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISSIVGLT------------GNV  154 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHH------------CCT
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC-CCeEEEEECCHHhcC------------CCC
Confidence            999999888643221   12   233344554    3445555566554 467788876533211            222


Q ss_pred             CCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          183 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       183 ~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ..-.++.+.-.-..|-+.+|..++  +..|++-.+
T Consensus       155 ~~~~Y~asKaal~~ltr~lA~el~--~~gIrVN~V  187 (251)
T d2c07a1         155 GQANYSSSKAGVIGFTKSLAKELA--SRNITVNAI  187 (251)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            222333433333456677888774  455655444

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.06  E-value=0.051  Score=47.24  Aligned_cols=156  Identities=12%  Similarity=0.075  Sum_probs=86.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEE-eCCCChh----------hh
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQLE----------NA  109 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~-~~t~d~~----------~a  109 (356)
                      +.+++.|+||++.+|..++..|+..|.  .|++.|+++  ++....++....  ..+..+ ..-+|.+          +.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999987  333344444432  122221 1112221          12


Q ss_pred             h-CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHh
Q 018433          110 L-TGMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  178 (356)
Q Consensus       110 l-~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~  178 (356)
                      + ..-|++|..+|......   .+   ....+..|+.    ..+.+.+.+.+. +.+.+|+++......           
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~isS~~~~~-----------  148 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIAGFS-----------  148 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGGGTS-----------
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc-ccccccccccccccc-----------
Confidence            2 23788888888653221   12   2333444443    344455555544 466677776544322           


Q ss_pred             CCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          179 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       179 ~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                       +.|..-.++.+.-.-..|-+.+|+.++  +..|++-.+
T Consensus       149 -~~~~~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I  184 (258)
T d1ae1a_         149 -ALPSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSV  184 (258)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -ccccchhHHHHHHHHHHHHHHHHHhcC--cCcEEEEEE
Confidence             222222233332223346677888875  455544433

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.05  E-value=0.019  Score=50.01  Aligned_cols=154  Identities=15%  Similarity=0.118  Sum_probs=88.0

Q ss_pred             eE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhhC
Q 018433           46 KV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT  111 (356)
Q Consensus        46 KI-~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  111 (356)
                      || .|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++.+..  ..+..+.. -+|.          .+.+-
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            55 6779999999999999999998  899999986  444455555432  22222211 1221          22245


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh-----CCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-----CPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~-----~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      .-|++|..||......   .+   ..+.+..|+.....+.+.+-.+     ...+.|++++.-....            +
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~------------~  146 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ------------G  146 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS------------C
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc------------c
Confidence            7899999998753221   12   3455667777766666665432     2345666664332211            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .|..-.++.+.-....|-+.+|..++  +..|++-.+
T Consensus       147 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  181 (257)
T d2rhca1         147 VVHAAPYSASKHGVVGFTKALGLELA--RTGITVNAV  181 (257)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            22111223322223346677888774  555655444

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.04  E-value=0.02  Score=46.25  Aligned_cols=66  Identities=23%  Similarity=0.277  Sum_probs=40.5

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhC-CCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~-~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~  119 (356)
                      .+||+|||+ |.+|.. ..+.+...+. .+++++|.++  +...+.++..    +.  .   .+|+++.++ +.|+|+++
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~----~~--~---~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGTLATRYRV----SA--T---CTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHHHHHHTTC----CC--C---CSSTTGGGGGCCSEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHhccc----cc--c---cccHHHhcccccceeccc
Confidence            379999999 999976 4555554432 3889999876  2222222211    11  1   245656553 78999987


Q ss_pred             C
Q 018433          120 A  120 (356)
Q Consensus       120 a  120 (356)
                      .
T Consensus        70 t   70 (167)
T d1xeaa1          70 A   70 (167)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.03  E-value=0.0032  Score=55.22  Aligned_cols=51  Identities=20%  Similarity=0.189  Sum_probs=39.3

Q ss_pred             hhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           25 MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      -||++-.+....++.  .++.||+|||| |..|.+.|..|+..|+  +|+|+|.++
T Consensus        13 ~~~~~~~~~~~~~~~--~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          13 YEEFLEIARNGLKAT--SNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             HHHHHHHHHHCSCCC--SSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             HHHHHHHHhcCCCCC--CCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            455544444433333  56779999999 9999999999999998  999999765

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.99  E-value=0.014  Score=48.81  Aligned_cols=92  Identities=17%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC-C
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG-V  122 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag-~  122 (356)
                      ..+|+|||. |.+|+.++..+..-+.  ++..+|.............     ...    ..++++.++.||+|++..- .
T Consensus        47 g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-----~~~----~~~l~~ll~~sD~v~l~~plt  114 (191)
T d1gdha1          47 NKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQ-----ATF----HDSLDSLLSVSQFFSLNAPST  114 (191)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHT-----CEE----CSSHHHHHHHCSEEEECCCCC
T ss_pred             ccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhccc-----ccc----cCCHHHHHhhCCeEEecCCCC
Confidence            469999999 9999999988876565  9999998652211111111     111    2467889999999999642 2


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +...++-..              +.+...-|++++||++
T Consensus       115 ~~T~~li~~--------------~~l~~mk~~a~lIN~s  139 (191)
T d1gdha1         115 PETRYFFNK--------------ATIKSLPQGAIVVNTA  139 (191)
T ss_dssp             TTTTTCBSH--------------HHHTTSCTTEEEEECS
T ss_pred             chHhheecH--------------HHhhCcCCccEEEecC
Confidence            222232111              1222334789999997

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.99  E-value=0.0033  Score=52.47  Aligned_cols=76  Identities=14%  Similarity=0.207  Sum_probs=45.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHH-HHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~-dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .+++||+|+||+|.+|.-+...|...+.+ ||..+-.+...|... +.............  .....+.++++|+|+.+.
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dvvf~al   79 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNL--VAVKDADFSNVDAVFCCL   79 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCC--BCGGGCCGGGCSEEEECC
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccc--hhhhhhhhcccceeeecc
Confidence            35679999999999999999998877654 777775444222211 11111111111111  112235578999999875

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.97  E-value=0.042  Score=47.79  Aligned_cols=155  Identities=13%  Similarity=0.071  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---h-------hhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---E-------NAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~-------~al  110 (356)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  ++....++....  .....+.. -+|.   +       +.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999998  899999986  344444454332  22222211 1121   1       122


Q ss_pred             C-CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 T-GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 ~-~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      . .-|++|..+|......   .+   ....+..|+...    +...+.+.+ ...+.||+++.-....            
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~G~Ii~isS~~~~~------------  150 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA-SERGNVVFISSVSGAL------------  150 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TSSEEEEEECCGGGTS------------
T ss_pred             CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhh-hccccccccccccccc------------
Confidence            3 3799999998653222   22   234455665444    344444443 3567777776433221            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      +.|..-.++.+.-.-..|-+.+|..++  +..|++-.+
T Consensus       151 ~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  186 (259)
T d2ae2a_         151 AVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGV  186 (259)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHhC--cCceEEEEe
Confidence            122111222222223346677787774  555654444

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.95  E-value=0.087  Score=45.31  Aligned_cols=155  Identities=17%  Similarity=0.194  Sum_probs=85.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhhCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL----------ENALTGM  113 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~~a  113 (356)
                      +.+.|+||++-+|..++..|+..|.  .|++.|+++.......+....  .++..+.. -+|.          .+.+-.-
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i   81 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGRC   81 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            4678889999999999999999998  999999987332222233222  22222211 1222          1224579


Q ss_pred             cEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          114 DLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       114 DiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      |++|..||......   .+   ....+..|+    ...+.+.+.+++. ..+.||++|.-....            +.|.
T Consensus        82 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Iv~isS~~~~~------------~~~~  148 (247)
T d2ew8a1          82 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRIINLTSTTYWL------------KIEA  148 (247)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGGS------------CCSS
T ss_pred             CEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhc-CCCCccccccchhcc------------cCcc
Confidence            99999998643211   12   233444554    4445555566554 357777776433211            1221


Q ss_pred             CCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       184 ~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       149 ~~~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~  181 (247)
T d2ew8a1         149 YTHYISTKAANIGFTRALASDLG--KDGITVNAIA  181 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccchhhhccHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            11222322222346677777773  5556554443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.94  E-value=0.053  Score=47.04  Aligned_cols=115  Identities=14%  Similarity=0.162  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  111 (356)
                      +.+.|+||++-+|..+|..|+..|.  .|++.|+++  +...+.++.... ..++..+.. -+|.          .+.+-
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4688889999999999999999998  999999987  333333443221 112222211 1221          12345


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      .-|++|..+|......   .+   ....+..|+    ...+...+.+.+....+.+++.+.
T Consensus        87 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s  147 (260)
T d1h5qa_          87 PISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  147 (260)
T ss_dssp             SEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence            7999999988643211   12   223445554    455566667666666776666543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.90  E-value=0.0015  Score=56.64  Aligned_cols=159  Identities=13%  Similarity=0.071  Sum_probs=82.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCCCC--CeEEEEeCCCChhhhhC--CCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTG--AVVRGFLGQPQLENALT--GMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~~~--~~v~~~~~t~d~~~al~--~aDiVIi  118 (356)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|.++. .....-..+....  ......  .....+.+.  .-|++|.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iD~lIn   77 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTEQADQV--TAEVGKLLGDQKVDAILC   77 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHHHHHHH--HHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcHHHHHHH--HHHHHHHhCCCCceEEEE
Confidence            45899999999999999999999988  8999998761 1100000000000  000000  001112222  3699999


Q ss_pred             cCCC-CC-CC-CCc----HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          119 PAGV-PR-KP-GMT----RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       119 ~ag~-~~-~~-g~~----r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      .||. +. .+ ...    ....+..|+......++.+..+- ..+.|++++.-....            +.|..-.++.+
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------~~~~~~~Y~as  145 (236)
T d1dhra_          78 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD------------GTPGMIGYGMA  145 (236)
T ss_dssp             CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CCTTBHHHHHH
T ss_pred             CCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC------------CccCCcccHHH
Confidence            8874 21 11 111    22345666666666666655543 467777776432211            22222222332


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          191 MLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       191 ~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .-.-..|-+.+|..++-.+..|++..+.
T Consensus       146 Kaal~~lt~~la~El~~~~~gI~vn~v~  173 (236)
T d1dhra_         146 KGAVHQLCQSLAGKNSGMPSGAAAIAVL  173 (236)
T ss_dssp             HHHHHHHHHHHTSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHhccCCCcEEEEEEE
Confidence            2223345556666554335567665554

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.86  E-value=0.011  Score=51.36  Aligned_cols=157  Identities=15%  Similarity=0.136  Sum_probs=85.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEe----CCCChhhhhCCCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~----~t~d~~~al~~aDiVIi  118 (356)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++ ....+..+.......++....    .-....+.+-.-|++|.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn   82 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   82 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            45788999999999999999999998  999999987 222222221110001111000    00112233568999999


Q ss_pred             cCCCCCC-C--CCc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          119 PAGVPRK-P--GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       119 ~ag~~~~-~--g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      .||.... +  ..+   ....+..|+.    ..+...+.+++. ..+.||+++......            +.|..-.++
T Consensus        83 nAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Ii~isS~~~~~------------~~~~~~~Y~  149 (248)
T d2d1ya1          83 NAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVASVQGLF------------AEQENAAYN  149 (248)
T ss_dssp             CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCGGGTS------------BCTTBHHHH
T ss_pred             eCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc-ccccccccccccccc------------cccccchhH
Confidence            9986432 1  122   2234455554    444555555443 367788876544321            122222223


Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .+.-.-..|-+.+|..++  +..|++-.+
T Consensus       150 asKaal~~ltk~lA~el~--~~gIrVN~I  176 (248)
T d2d1ya1         150 ASKGGLVNLTRSLALDLA--PLRIRVNAV  176 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            332223346677788875  455654444

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0069  Score=52.62  Aligned_cols=152  Identities=14%  Similarity=0.216  Sum_probs=85.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al~  111 (356)
                      +.+.|+||++-+|.+++..|+..|.  .|++.|+++  ++..+.++...     ...+. .-+|.          .+.+.
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGAN-----GKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCC-----CcEEEEEecCHHHhhhhhhhhhcccC
Confidence            4567779999999999999999998  999999986  33333344221     11110 01121          12345


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      .-|++|..||......   .+   ....+..|+.    ..+...+.+.+. ..+.||++|.....          .  +.
T Consensus        78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~~----------~--~~  144 (243)
T d1q7ba_          78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK-RHGRIITIGSVVGT----------M--GN  144 (243)
T ss_dssp             SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHH----------H--CC
T ss_pred             CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc-CCCEeeeecchhhc----------C--CC
Confidence            7999999988643222   11   2333455554    445555555544 46778887643211          1  22


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      |..-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       145 ~~~~~Y~asKaal~~lt~~lA~ela--~~gIrVN~I~  179 (243)
T d1q7ba_         145 GGQANYAAAKAGLIGFSKSLAREVA--SRGITVNVVA  179 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence            2222233333333456777888874  5556544443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.055  Score=43.64  Aligned_cols=100  Identities=19%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhh--------C
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL--------T  111 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al--------~  111 (356)
                      -.+.-+|.|+|+ |.+|...+..+...+. ..|+..|.++ ....+.++     ...........+..+..        .
T Consensus        24 ~~~gd~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~-----Ga~~~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          24 VTLGHKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEI-----GADLVLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT-----TCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHh-----CCcccccccccccccccccccccCCC
Confidence            344568999998 9999998888877764 4899999986 22333332     12222211223433322        3


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      ++|+||-+.|.+.               .+   -..+.-..|.+.+++++.|.+
T Consensus        97 g~Dvvid~~G~~~---------------~~---~~a~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          97 KPEVTIECTGAEA---------------SI---QAGIYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             CCSEEEECSCCHH---------------HH---HHHHHHSCTTCEEEECSCCCS
T ss_pred             CceEEEeccCCch---------------hH---HHHHHHhcCCCEEEEEecCCC
Confidence            7999999886430               01   122222347888888876544

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.78  E-value=0.06  Score=47.10  Aligned_cols=115  Identities=17%  Similarity=0.257  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeC-CCCh---h-------hh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLG-QPQL---E-------NA  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~-t~d~---~-------~a  109 (356)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++...... ..+..+.. -+|.   +       +.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            34788999999999999999999998  999999986  44445555544221 23333221 1221   1       12


Q ss_pred             hCCCcEEEEcCCCCCCCC-----CcH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Q 018433          110 LTGMDLVIIPAGVPRKPG-----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       110 l~~aDiVIi~ag~~~~~g-----~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      +-.-|++|..+|.....+     ++.   ...+..|+.    ..+...+.+.+ ...+.|++.|
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~s  144 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSS  144 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchh
Confidence            346899999988643221     122   233444554    44455555543 3566666654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.045  Score=47.01  Aligned_cols=160  Identities=14%  Similarity=0.156  Sum_probs=87.8

Q ss_pred             CCCCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCC----------hhh
Q 018433           42 AAGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ----------LEN  108 (356)
Q Consensus        42 ~~~~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d----------~~~  108 (356)
                      =+.+++.|+||+|  -+|+++|..|+..|.  +|++.|+++ ....+.++............ ...+          ..+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQC-DVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeec-ccchHHHHHHHHHHhhh
Confidence            3456899999966  488999999999998  999999987 44444333332211111111 1111          122


Q ss_pred             hhCCCcEEEEcCCCCCCCC---C-----c---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHH
Q 018433          109 ALTGMDLVIIPAGVPRKPG---M-----T---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK  176 (356)
Q Consensus       109 al~~aDiVIi~ag~~~~~g---~-----~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~  176 (356)
                      .+...|++|..++......   .     .   ......-|......+.+.+..+- +...++++|......         
T Consensus        80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~---------  150 (258)
T d1qsga_          80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---------  150 (258)
T ss_dssp             TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS---------
T ss_pred             cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc---------
Confidence            2355678888776532111   0     0   11223455555666666665554 345566655443211         


Q ss_pred             HhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          177 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       177 ~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                         +.|..-.++.+.-....+-+.+|..++  ++.|++-.+-
T Consensus       151 ---~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~  187 (258)
T d1qsga_         151 ---AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  187 (258)
T ss_dssp             ---BCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeeccc
Confidence               122222344433334457788899986  6677666554

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.1  Score=46.27  Aligned_cols=162  Identities=12%  Similarity=0.066  Sum_probs=90.7

Q ss_pred             ccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCC---CCCeEEEEeC-CCChh----
Q 018433           38 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TGAVVRGFLG-QPQLE----  107 (356)
Q Consensus        38 ~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~---~~~~v~~~~~-t~d~~----  107 (356)
                      +||.=+.+.+.|+||++-+|..++..|+..|.  .|++.|++.  ++..+.++....   ...++..+.. -+|.+    
T Consensus         6 ~~g~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~   83 (297)
T d1yxma1           6 APGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNN   83 (297)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHH
Confidence            45545667899999999999999999999998  899999986  444455554321   1223333221 12221    


Q ss_pred             ------hhhCCCcEEEEcCCCCCCCC---C---cHHHHHHHHHHHH----HHHHHHHHHhCCCcEEEEecCCCCccHHHH
Q 018433          108 ------NALTGMDLVIIPAGVPRKPG---M---TRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIA  171 (356)
Q Consensus       108 ------~al~~aDiVIi~ag~~~~~g---~---~r~~~~~~N~~i~----~~i~~~i~~~~p~a~viv~tNPv~~~t~~~  171 (356)
                            +.+..-|++|..||......   .   +....+..|+...    +..++.+.+.. .+.|+++|.....     
T Consensus        84 ~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~ss~~~~-----  157 (297)
T d1yxma1          84 LVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKA-----  157 (297)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTT-----
T ss_pred             HHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc-ccccccccccccc-----
Confidence                  22457899999988643221   1   1234455665444    44444444433 4555665543211     


Q ss_pred             HHHHHHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          172 AEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       172 ~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                              ++|..-.++.+.-.-..|-+.+|..++  +..|++-.+
T Consensus       158 --------~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  193 (297)
T d1yxma1         158 --------GFPLAVHSGAARAGVYNLTKSLALEWA--CSGIRINCV  193 (297)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             --------cccccccchhHHHHHHHHHHHHHHHhc--ccCceEEEe
Confidence                    122211222332233456677888874  555654444

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.72  E-value=0.0023  Score=55.19  Aligned_cols=158  Identities=13%  Similarity=0.037  Sum_probs=80.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHHHHhcCCCCCeEEEEe-CCCChhhh--hCCCcEEEEcC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFL-GQPQLENA--LTGMDLVIIPA  120 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~-g~~~dl~~~~~~~~v~~~~-~t~d~~~a--l~~aDiVIi~a  120 (356)
                      -||.|+||+|-+|..++..|+..|.  +|+++|+++.. ....-...... ....... ......+.  ...-|++|..|
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~iD~linnA   79 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNK-NWTEQEQSILEQTASSLQGSQVDGVFCVA   79 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTS-CHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCchhcccccceecccc-CchhHHHHHHHHHHHHhcCCCeeEEEECC
Confidence            3899999999999999999999997  89999997511 00000000000 0000000 00011111  23469999998


Q ss_pred             CCCC--CC-CCc----HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechh
Q 018433          121 GVPR--KP-GMT----RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  192 (356)
Q Consensus       121 g~~~--~~-g~~----r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~l  192 (356)
                      |...  .+ ..+    ....+..|+.....+++....+- +.+.|+++|......            +.|..-.++.+.-
T Consensus        80 G~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~------------~~~~~~~Y~asKa  147 (235)
T d1ooea_          80 GGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG------------PTPSMIGYGMAKA  147 (235)
T ss_dssp             CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CCTTBHHHHHHHH
T ss_pred             cccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC------------CcccccchHHHHH
Confidence            8532  11 111    22345666655555555555443 457777776432111            1222112222222


Q ss_pred             hHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          193 DVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       193 d~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      ....|-+.+|..++-.+..|++..+
T Consensus       148 al~~l~~~la~e~~~~~~~i~v~~i  172 (235)
T d1ooea_         148 AVHHLTSSLAAKDSGLPDNSAVLTI  172 (235)
T ss_dssp             HHHHHHHHHHSTTSSCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEE
Confidence            3334556666666533455555444

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.032  Score=44.85  Aligned_cols=66  Identities=12%  Similarity=0.207  Sum_probs=42.9

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCc--hhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~-~a~~l~~~~~~~el~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ++||+|||+ |.+|.. .++.+...+-+.-+.++|.+..  ...+.++. .      ..   .+++++.+++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-~------~~---~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-I------PY---ADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-C------CB---CSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-c------cc---cccchhhhhhcccccccc
Confidence            479999998 999975 5666665544444568898772  22222221 1      11   245667779999999874

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0067  Score=50.43  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .++.||+|||| |..|.+.|..|+..|+  ++.|+|...
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            34569999999 9999999999999998  999999876

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.66  E-value=0.022  Score=49.67  Aligned_cols=152  Identities=18%  Similarity=0.159  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC---h-------hhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---L-------ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d---~-------~~al  110 (356)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  +.....++..     .+..+.. -+|   .       .+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-----AARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            45789999999999999999999998  999999976  2223333321     1111111 112   1       1234


Q ss_pred             CCCcEEEEcCCCCCCCC---C---cHHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCC
Q 018433          111 TGMDLVIIPAGVPRKPG---M---TRDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  180 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~---~r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~  180 (356)
                      ...|++|..||......   .   +....+..|+.    ..+...+.+++. ..+.||++|.-....            +
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-~~G~II~isS~~~~~------------~  144 (254)
T d1hdca_          78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAAGLM------------G  144 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------C
T ss_pred             CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc-CCCeecccccchhcc------------c
Confidence            57999999998643211   1   12334555554    445555555544 467888876543321            1


Q ss_pred             CCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          181 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       181 ~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .|..-.++.+.-.-..|-+.+|..++  +..|++-.+
T Consensus       145 ~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I  179 (254)
T d1hdca_         145 LALTSSYGASKWGVRGLSKLAAVELG--TDRIRVNSV  179 (254)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhC--CCceEEEEe
Confidence            22222223332223346677777763  445544444

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.65  E-value=0.12  Score=45.13  Aligned_cols=156  Identities=13%  Similarity=0.033  Sum_probs=83.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhhhC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT  111 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al~  111 (356)
                      +.+.|+||+|.+|.++|..|+..|.  +|++.|++.  +...+.++.... ...+..+. .-+|.          .+.+.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            4688999999999999999999997  999999987  334444554321 11222211 11222          12246


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      ..|++|..+|......   .+   ....+..|...    ....+...........+++.+......            +.
T Consensus       103 ~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~------------~~  170 (294)
T d1w6ua_         103 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------------GS  170 (294)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH------------CC
T ss_pred             ccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh------------cc
Confidence            7899999988643222   11   22223333333    333444444444555555554432111            11


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      |..-.++.+.-.-..+-+.+|..++  +..|++-.+
T Consensus       171 ~~~~~YsasKaal~~ltk~lA~ela--~~gIrVN~I  204 (294)
T d1w6ua_         171 GFVVPSASAKAGVEAMSKSLAAEWG--KYGMRFNVI  204 (294)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHh--HhCeEEEEE
Confidence            1111123332233456677888875  555654444

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.048  Score=43.20  Aligned_cols=101  Identities=7%  Similarity=0.001  Sum_probs=62.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCCh----hhhhCCCcEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVI  117 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~----~~al~~aDiVI  117 (356)
                      +.+|.|+|. |.+|..++..|...+.  +++++|.++  ......++..... .-+.+  ..+|.    +..+.+||.||
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~~~-~vi~G--d~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDNA-DVIPG--DSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTTC-EEEES--CTTSHHHHHHHTTTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcCCc-EEEEc--cCcchHHHHHhccccCCEEE
Confidence            458999999 9999999999998887  899999876  2223333332111 11221  11232    22357899999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCC
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVN  165 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv~  165 (356)
                      ++.+..           ..|+.+    +..+++.+|+..++.-+ +|.+
T Consensus        77 ~~~~~d-----------~~n~~~----~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          77 ALSDND-----------ADNAFV----VLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             ECSSCH-----------HHHHHH----HHHHHHHTSSSCEEEECSSGGG
T ss_pred             EccccH-----------HHHHHH----HHHHHHhCCCCceEEEEcCHHH
Confidence            985321           344433    44567788987666554 6554

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.64  E-value=0.017  Score=46.32  Aligned_cols=61  Identities=15%  Similarity=0.124  Sum_probs=38.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ||++||. |.+|+.+|..|+..++  .++ ++....+  ..++..... . ..     .. .+.+.++|++|+..
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~~~--~~~~~~~~~-~-~~-----~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTFEK--ALRHQEEFG-S-EA-----VP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSSTHH--HHHHHHHHC-C-EE-----CC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCHHH--HHHHHHHcC-C-cc-----cc-cccccceeEEEecc
Confidence            8999999 9999999999987775  555 4443321  122222111 1 11     12 35678899998863

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.59  E-value=0.0064  Score=51.53  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ..||+|||| |-.|.+.|+.|.+.+.  +|.|+|.+.
T Consensus         6 ~~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            359999999 9999999999999998  999999864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.56  E-value=0.0069  Score=50.42  Aligned_cols=88  Identities=23%  Similarity=0.241  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|||. |.+|..++..+..-|.  ++..+|....+        ..  .  ..   ..++++.+++||+|++..  
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~--------~~--~--~~---~~~l~ell~~sDiv~~~~--  100 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKE--------GP--W--RF---TNSLEEALREARAAVCAL--  100 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCC--------SS--S--CC---BSCSHHHHTTCSEEEECC--
T ss_pred             cCceEEEecc-ccccccceeeeecccc--ccccccccccc--------cc--e--ee---eechhhhhhccchhhccc--
Confidence            4568999999 9999999998886666  99999986421        11  0  11   135789999999999964  


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                      |..+. ++ .++  |       .+.+....|++++||++
T Consensus       101 pl~~~-t~-~li--~-------~~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1         101 PLNKH-TR-GLV--K-------YQHLALMAEDAVFVNVG  128 (181)
T ss_dssp             CCSTT-TT-TCB--C-------HHHHTTSCTTCEEEECS
T ss_pred             ccccc-cc-ccc--c-------cceeeeccccceEEecc
Confidence            33221 11 000  1       12333345799999987

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.55  E-value=0.073  Score=45.63  Aligned_cols=156  Identities=15%  Similarity=0.160  Sum_probs=87.4

Q ss_pred             e-EEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------
Q 018433           46 K-VAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------  106 (356)
Q Consensus        46 K-I~IIGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------  106 (356)
                      + |.|+||++-+|..+|..|+..|.     ...++++|++.  ++..+.++....  .....+.. -+|.          
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            5 46889999999999999998774     13589999876  444455555432  23222211 1222          


Q ss_pred             hhhhCCCcEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHH
Q 018433          107 ENALTGMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  176 (356)
Q Consensus       107 ~~al~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~  176 (356)
                      .+.+..-|++|..||......   .+   ....+..|+    ...+...+.+++. ..+.||+++.-....         
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~---------  149 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVAATK---------  149 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS---------
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEechhhcC---------
Confidence            223457899999998653221   11   233444554    4455566666553 467777776544322         


Q ss_pred             HhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          177 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       177 ~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                         ++|..-.++.+.-.-..|-+.+|..++  +..|++..+-
T Consensus       150 ---~~~~~~~Y~asK~al~~lt~~la~el~--~~gIrvn~i~  186 (240)
T d2bd0a1         150 ---AFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRITDVQ  186 (240)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHHHhC--cCCeEEEEee
Confidence               222222233332223346667777764  5566554443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.55  E-value=0.041  Score=47.88  Aligned_cols=157  Identities=13%  Similarity=0.090  Sum_probs=84.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhh
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENA  109 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~a  109 (356)
                      +.+.+.|+||++-+|..+|..|+..|.  .|++.|+++  +...+.++....  ..+..+.. -+|.          .+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHH
Confidence            345889999999999999999999998  999999986  344444554432  12222211 1221          122


Q ss_pred             hCC-CcEEEEcCCCCCC-C--CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHh
Q 018433          110 LTG-MDLVIIPAGVPRK-P--GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  178 (356)
Q Consensus       110 l~~-aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~  178 (356)
                      +.+ -|++|..+|.... +  ..+   ....+..|+..    .+...+.+++. ..+.||++|.-....           
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Iv~isS~~~~~-----------  150 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFMSSIAGVV-----------  150 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEEC-----------------
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccc-ccccccccccccccc-----------
Confidence            223 7999999886432 1  122   23344555544    44555555544 356777776443322           


Q ss_pred             CCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          179 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       179 ~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                       +.|..-.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       151 -~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~V~  187 (259)
T d1xq1a_         151 -SASVGSIYSATKGALNQLARNLACEWA--SDGIRANAVA  187 (259)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -cccccccccccccchhhhhHHHHHHhc--ccCeEEEEec
Confidence             112222233333333456677787774  5556555443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.008  Score=52.06  Aligned_cols=58  Identities=19%  Similarity=0.348  Sum_probs=42.0

Q ss_pred             hHHHHHhccCCCchhhhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           10 RIARISAHLYPPNLQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .++|.+.|..=+.+-++     -|++=+.+      ||+|+|+ |.+|+.++..|+..|+ .+|+|+|-+.
T Consensus         7 e~~ry~Rqi~l~~~g~~-----~Q~kL~~~------~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_           7 EMLRYNRQIILRGFDFD-----GQEALKDS------RVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             HHHHTHHHHTSTTTHHH-----HHHHHHHC------EEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             HHHHhhceeccccCCHH-----HHHHHhCC------CEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            35566666543433332     24444555      9999999 9999999999999886 4999999875

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.53  E-value=0.0053  Score=53.73  Aligned_cols=116  Identities=12%  Similarity=0.125  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCC--CCeEEEEeC----CCChhhhhCCCcEE
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLG----QPQLENALTGMDLV  116 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~--~~~v~~~~~----t~d~~~al~~aDiV  116 (356)
                      +.+.|+||++-+|..++..|+..|.  .|++.|+++  ++..+.++.....  ..++.....    -....+.+..-|++
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            4677889989999999999999998  899999986  3334444432110  011110000    01112334578999


Q ss_pred             EEcCCCCCCC---CCc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          117 IIPAGVPRKP---GMT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       117 Ii~ag~~~~~---g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      |..||.....   ..+   ....+..|+    ...+...+.+++  ..+.||+++...
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~G~Iv~isS~~  140 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE--TGGSIINMASVS  140 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TCEEEEEECCGG
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCCceecccchh
Confidence            9999864321   112   233445554    345555565543  357888886544

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.52  E-value=0.024  Score=46.65  Aligned_cols=73  Identities=18%  Similarity=0.342  Sum_probs=43.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC---CchhHHH-HH-hcCC--CCCeEEEEeCCCChhhhhCCCcEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV---NTPGVTA-DI-SHMD--TGAVVRGFLGQPQLENALTGMDLV  116 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~---~~~g~~~-dl-~~~~--~~~~v~~~~~t~d~~~al~~aDiV  116 (356)
                      ++||+|+||+|++|.-+...|...+.+ ||.-+-..   ...|... +. .+..  ........   .+......++|+|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            579999999999999999999887654 55433221   1112211 11 1111  11223322   3444556899999


Q ss_pred             EEcC
Q 018433          117 IIPA  120 (356)
Q Consensus       117 Ii~a  120 (356)
                      +++.
T Consensus        77 f~al   80 (179)
T d2g17a1          77 FLAT   80 (179)
T ss_dssp             EECS
T ss_pred             eccc
Confidence            9985

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.51  E-value=0.0031  Score=54.80  Aligned_cols=153  Identities=16%  Similarity=0.191  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch---hHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP---GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~---g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      .+++.|+||++-+|..++..|+..|.  +|++.|+++  .+   ....|+.+..   .++...  ....+.+..-|++|.
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~~--~~~~~~~g~iDiLVn   79 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRAF--TAVEEHQGPVEVLVS   79 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHHH--HHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHHH--HHHHHhcCCceEEEe
Confidence            35789999988999999999999998  999999976  11   1112222211   011000  122344568999999


Q ss_pred             cCCCCCCC---CCc---HHHHHHHHHHH----HHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEE
Q 018433          119 PAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  188 (356)
Q Consensus       119 ~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG  188 (356)
                      .||.....   ..+   ....+..|+..    .+...+.+.+. ..+.||++|.-.....            .|..-.++
T Consensus        80 nAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Iv~isS~~~~~~------------~~~~~~Y~  146 (237)
T d1uzma1          80 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVSGLWG------------IGNQANYA  146 (237)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCCC-----------------CCHHHH
T ss_pred             eecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-CCCceEEEcchhhccC------------CcccHHHH
Confidence            99864321   122   23345555544    44455555543 4567777765443221            11111223


Q ss_pred             echhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          189 VTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       189 ~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       147 asKaal~~lt~~lA~e~~--~~gIrVN~I~  174 (237)
T d1uzma1         147 ASKAGVIGMARSIARELS--KANVTANVVA  174 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhhh--cCCceeeeee
Confidence            332223346677777764  4556554443

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.51  E-value=0.03  Score=46.39  Aligned_cols=92  Identities=23%  Similarity=0.347  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC-
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG-  121 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag-  121 (356)
                      ..++|+|+|. |.+|..++..+..-+.  +|+.+|.........+..       +..    .++++.++.||+|++..- 
T Consensus        43 ~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~~----~~l~ell~~sDiv~~~~Pl  108 (184)
T d1ygya1          43 FGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFISVHLPK  108 (184)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEEEECCCC
T ss_pred             cceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------cee----ccHHHHHhhCCEEEEcCCC
Confidence            4569999999 9999999988875454  999999765333322221       121    357789999999999742 


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      .+...++-..              +.+....|++++||++=
T Consensus       109 t~~T~~lin~--------------~~l~~mk~~a~lIN~sR  135 (184)
T d1ygya1         109 TPETAGLIDK--------------EALAKTKPGVIIVNAAR  135 (184)
T ss_dssp             STTTTTCBCH--------------HHHTTSCTTEEEEECSC
T ss_pred             CchhhhhhhH--------------HHHhhhCCCceEEEecc
Confidence            2222232111              12233447999999973

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.49  E-value=0.023  Score=51.82  Aligned_cols=72  Identities=19%  Similarity=0.343  Sum_probs=50.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|||+ |..+..-+..+..--.+.+|.++|++.  ....+.++.... +..+..   ..++++++++||+|+.+.
T Consensus       128 a~~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~-g~~v~~---~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         128 ARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYS-GLTIRR---ASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCT-TCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             CceEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhcc-CCCcee---cCCHHHHHhcCCceeecc
Confidence            348999999 988877666555433367999999986  344555665422 234443   367899999999998754

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.41  E-value=0.035  Score=45.50  Aligned_cols=71  Identities=14%  Similarity=0.134  Sum_probs=42.3

Q ss_pred             CCCCeEEEEcCCCchHHH-HHHHHHhCCCCcEEE-EEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEEE
Q 018433           42 AAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVI  117 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~-~a~~l~~~~~~~el~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiVI  117 (356)
                      ++++||+|||+ |.+|.. .++.+...+...+|+ ++|.+....  ..+.+....+  ..+   +|+++.++  +.|+|+
T Consensus         1 MkkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~--~~~~~~~~~~--~~~---~~~~ell~~~~id~v~   72 (181)
T d1zh8a1           1 LRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHA--EEFAKMVGNP--AVF---DSYEELLESGLVDAVD   72 (181)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH--HHHHHHHSSC--EEE---SCHHHHHHSSCCSEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh--hhhhcccccc--cee---eeeeccccccccceee
Confidence            35679999999 999986 466666544322555 788875221  1222111111  222   57777774  578898


Q ss_pred             EcC
Q 018433          118 IPA  120 (356)
Q Consensus       118 i~a  120 (356)
                      ++.
T Consensus        73 I~t   75 (181)
T d1zh8a1          73 LTL   75 (181)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            874

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.35  E-value=0.069  Score=46.37  Aligned_cols=156  Identities=13%  Similarity=0.141  Sum_probs=82.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC-CeEEEEeC-CCCh---h-------hhhC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLG-QPQL---E-------NALT  111 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~-~~v~~~~~-t~d~---~-------~al~  111 (356)
                      .+.|+||++-+|..++..|+..|.  +|++.|+++  ++..+.++...... ..+..+.. -+|.   +       +.+-
T Consensus         7 valVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   84 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG   84 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            566779999999999999999998  999999986  44455556544221 23333221 1121   1       2234


Q ss_pred             CCcEEEEcCCCCCC-----C--CCc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHH
Q 018433          112 GMDLVIIPAGVPRK-----P--GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKK  177 (356)
Q Consensus       112 ~aDiVIi~ag~~~~-----~--g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~  177 (356)
                      .-|++|..+|....     +  .++   ....+..|+.    ..+...+.+++. ..++|++.|--....          
T Consensus        85 ~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S~~~~~~----------  153 (264)
T d1spxa_          85 KLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISSIASGLH----------  153 (264)
T ss_dssp             CCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCTTSSSS----------
T ss_pred             CCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeeeeccccc----------
Confidence            78999999886321     1  112   2233444554    445555555543 344444443222211          


Q ss_pred             hCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          178 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       178 ~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                        +.|..-.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       154 --~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V~  190 (264)
T d1spxa_         154 --ATPDFPYYSIAKAAIDQYTRNTAIDLI--QHGIRVNSIS  190 (264)
T ss_dssp             --CCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             --cCCCchhhhhhhhhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence              122111233332233346677777774  5556554443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.35  E-value=0.008  Score=51.44  Aligned_cols=34  Identities=15%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.||+|||| |..|.++|..|+..|+  +++++|.+.
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERSP   37 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            569999999 9999999999999998  999999753

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.34  E-value=0.031  Score=46.92  Aligned_cols=62  Identities=19%  Similarity=0.300  Sum_probs=45.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ..+|+|||. |.+|+.+|..+..-|.  +|..+|........   .+. .    .    ..++.+.++.||+|++..
T Consensus        43 gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~---~~~-~----~----~~~l~~~l~~sDii~~~~  104 (197)
T d1j4aa1          43 DQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELE---KKG-Y----Y----VDSLDDLYKQADVISLHV  104 (197)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHH---HTT-C----B----CSCHHHHHHHCSEEEECS
T ss_pred             CCeEEEecc-cccchhHHHhHhhhcc--cccccCcccccccc---cce-e----e----eccccccccccccccccC
Confidence            469999999 9999999999976565  99999976422111   111 1    1    245788999999999975

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.32  E-value=0.018  Score=46.96  Aligned_cols=67  Identities=19%  Similarity=0.363  Sum_probs=45.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ++++||+|+|. |.+|+.++..+...+-+.-+.++|.+...        . .......   ..+..+...+.|+|+++..
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~--------~-~~~~~~~---~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL--------D-TKTPVFD---VADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC--------S-SSSCEEE---GGGGGGTTTTCSEEEECSC
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccc--------c-ccccccc---chhhhhhccccceEEEeCC
Confidence            35689999998 99999998888776544344567766411        1 1122332   2456677899999999753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.31  E-value=0.1  Score=41.69  Aligned_cols=103  Identities=16%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChh---hhh----
Q 018433           39 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE---NAL----  110 (356)
Q Consensus        39 ~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~---~al----  110 (356)
                      .+..+..+|.|+|+ |.+|...+..+...|.  +++.+|.++ ....+.++..   ...+.......+..   +.+    
T Consensus        22 ~~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga---~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          22 AGVQLGTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGA---DVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             HTCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC---SEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             hCCCCCCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCC---cEEEeccccccccchhhhhhhccc
Confidence            34455679999997 9999999888888885  899999976 3333333321   11111111111211   111    


Q ss_pred             -CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          111 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                       .++|+||.+.|.+.                  .+-..++-..|.+.++.++.|.+
T Consensus        96 g~g~D~vid~~g~~~------------------~~~~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2          96 GDLPNVTIDCSGNEK------------------CITIGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             SSCCSEEEECSCCHH------------------HHHHHHHHSCTTCEEEECSCCSS
T ss_pred             ccCCceeeecCCChH------------------HHHHHHHHHhcCCceEEEecCCC
Confidence             46999999876430                  12222333458999999976654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.30  E-value=0.015  Score=50.30  Aligned_cols=155  Identities=18%  Similarity=0.120  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCCh-------hhhhCCCc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL-------ENALTGMD  114 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~-------~~al~~aD  114 (356)
                      .+++.|+||++-+|..++..|+..|.  +|++.|+++  ++..+.++.......++..   ..+.       .+.+..-|
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~g~iD   79 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVAD---PASVERGFAEALAHLGRLD   79 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTTC---HHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEecCC---HHHHHHHHHHHHHhcCCce
Confidence            34788999989999999999999998  999999976  2222222211000011110   0111       22345789


Q ss_pred             EEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCC
Q 018433          115 LVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  185 (356)
Q Consensus       115 iVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~k  185 (356)
                      ++|..||......   .+   ....+..|+.....+.+.+.++   ...+.+++.+. ...            .+.|..-
T Consensus        80 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss-~~~------------~~~~~~~  146 (242)
T d1ulsa_          80 GVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS-RVY------------LGNLGQA  146 (242)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC-GGG------------GCCTTCH
T ss_pred             EEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecc-ccc------------cCCCCCc
Confidence            9999998753221   22   2344556665554444443332   23445555443 111            1233222


Q ss_pred             EEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          186 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       186 viG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       147 ~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~  177 (242)
T d1ulsa_         147 NYAASMAGVVGLTRTLALELG--RWGIRVNTLA  177 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHh--hhCcEEEEEe
Confidence            333333233346677788774  5556555543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.28  E-value=0.0071  Score=49.83  Aligned_cols=81  Identities=19%  Similarity=0.268  Sum_probs=51.8

Q ss_pred             hhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCC---CeEEEEeCCCChhh
Q 018433           34 AKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQLEN  108 (356)
Q Consensus        34 ~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~---~~v~~~~~t~d~~~  108 (356)
                      .+-+.....+..+|.|+|+ |.++.++++.|...+   +|.+++++.  ++..+.++......   ..+..    .++..
T Consensus         8 ~l~~~~~~~~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~   79 (177)
T d1nvta1           8 ALEEEIGRVKDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDV   79 (177)
T ss_dssp             HHHHHHCCCCSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTC
T ss_pred             HHHHhCCCcCCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhh
Confidence            3333334456679999999 888998888885433   899999876  34444455432211   12332    24456


Q ss_pred             hhCCCcEEEEcCCC
Q 018433          109 ALTGMDLVIIPAGV  122 (356)
Q Consensus       109 al~~aDiVIi~ag~  122 (356)
                      .+.++|+||.+...
T Consensus        80 ~~~~~dliIn~tp~   93 (177)
T d1nvta1          80 DLDGVDIIINATPI   93 (177)
T ss_dssp             CCTTCCEEEECSCT
T ss_pred             ccchhhhhccCCcc
Confidence            67899999997543

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.27  E-value=0.18  Score=43.47  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeC--CCCh----------hhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG--QPQL----------ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~--t~d~----------~~al  110 (356)
                      .+.|.|+||++-+|..+|..|+..|.  .+++++.+. ......++........+..+..  +.+.          .+.+
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            45799999988999999999999987  666665443 2222222322111223322211  1121          1224


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHH----HHHHHHHHHHHh--CCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAG----IVRTLCEGIAKC--CPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~----i~~~i~~~i~~~--~p~a~viv~tN  162 (356)
                      ...|++|..||....  .+-...+..|+.    ..+...+.+.+.  .+.+.||+++.
T Consensus        83 g~iDilvnnAG~~~~--~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS  138 (254)
T d1sbya1          83 KTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             SCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCEEEeCCCCCCH--HHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence            678999999986532  223344455554    556666666543  35678887753

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.21  E-value=0.089  Score=45.42  Aligned_cols=156  Identities=18%  Similarity=0.150  Sum_probs=85.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEe-CCCCh----------hhhh
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL  110 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~-~t~d~----------~~al  110 (356)
                      +.+.|+||++-+|..+|..|+..|.  +|++.+...   ++....++.+..  .++..+. .-+|.          .+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            3688999999999999999999998  888866544   233344444432  1222221 11221          1223


Q ss_pred             CCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          111 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      -.-|++|..+|......   .+   ....+..|+.....+.+....+. .++.+++++......           .++|.
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~-----------~~~~~  151 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM-----------TGIPN  151 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC-----------CSCCS
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccc-----------cCCCC
Confidence            47899999988642211   12   23445666665555555555544 345555554332211           12322


Q ss_pred             CCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       184 ~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .=.++.+.-....+-+.+|..++  +..|++-.+
T Consensus       152 ~~~Y~asK~al~~l~r~lA~e~~--~~gIrvN~I  183 (259)
T d1ja9a_         152 HALYAGSKAAVEGFCRAFAVDCG--AKGVTVNCI  183 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHHh--hcCeEEecc
Confidence            22223333333456778888875  455644443

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0096  Score=48.64  Aligned_cols=74  Identities=22%  Similarity=0.192  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCC--CCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .++||+|+|++|.+|+.++..+...+-..=+..+|.......-.|+.....  ...+..   +.|+++.++++|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            467999999989999999998887643212245565431111122222211  122332   24667788999988764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.19  E-value=0.0062  Score=52.08  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |||+|||| |..|.+.|..|.+.|+  +|.|++.+.
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            79999999 9999999999999998  899999865

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.16  E-value=0.1  Score=44.90  Aligned_cols=152  Identities=9%  Similarity=0.028  Sum_probs=83.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChh-------hhhCCCcEEEE
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE-------NALTGMDLVII  118 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~-------~al~~aDiVIi  118 (356)
                      ..|+||++-+|..+|..|+..|.  .|++.|++. .......+.......++..   ..+.+       +.+-.-|++|.
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~~---~~~~~~~~~~~~~~~G~iDiLVn   77 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPMS---EQEPAELIEAVTSAYGQVDVLVS   77 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEECC---CCSHHHHHHHHHHHHSCCCEEEE
T ss_pred             EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccCC---HHHHHHHHHHHHHHcCCCCEEEE
Confidence            56999988999999999999997  899999876 2111111111111122221   22322       33457899999


Q ss_pred             cCCCCC--CCC--CcH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEE
Q 018433          119 PAGVPR--KPG--MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  187 (356)
Q Consensus       119 ~ag~~~--~~g--~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kvi  187 (356)
                      .||...  ++-  .+.   ...+..|    ....+.+.+.+++.. .+.||++|.-....            +.|..-.+
T Consensus        78 NAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~~------------~~~~~~~Y  144 (252)
T d1zmta1          78 NDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFG------------PWKELSTY  144 (252)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTS------------CCTTCHHH
T ss_pred             CCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeeccccccccc------------cccccccc
Confidence            887532  221  222   2223334    345667777776654 56777776443321            12111122


Q ss_pred             EechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          188 GVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       188 G~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      +.+.-....|-+.+|..++  +..|++-.+-
T Consensus       145 ~asKaal~~lt~~lA~ela--~~gIrVN~I~  173 (252)
T d1zmta1         145 TSARAGACTLANALSKELG--EYNIPVFAIG  173 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTCCEEEEE
T ss_pred             ccccccHHHHHHHHHHHhc--ccCcEEEEEe
Confidence            3332223346677788774  5556555444

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.13  Score=44.40  Aligned_cols=151  Identities=18%  Similarity=0.137  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEe-CCCC----------hhhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~-~t~d----------~~~al  110 (356)
                      .+.+.|+||++-+|.++|..|+..|.  +|++.|+++  ++....++.+.      ..+. .-+|          ..+.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~------~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGA------VFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTE------EEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCC------eEEEccCCCHHHHHHHHHHHHHhc
Confidence            34788999999999999999999998  999999986  33333333221      1111 0111          12334


Q ss_pred             CCCcEEEEcCCCCCCCC----Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 TGMDLVIIPAGVPRKPG----MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g----~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      -.-|++|..||.....+    .+   ....+..|+    ...+...+.+++.  .+.||+++......            
T Consensus        78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~~~~~------------  143 (250)
T d1ydea1          78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVGAI------------  143 (250)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHHHH------------
T ss_pred             CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccccccccc------------
Confidence            57899999998543222    12   223344444    4455666666654  46777776433211            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      +.|..-.++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       144 ~~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I~  180 (250)
T d1ydea1         144 GQAQAVPYVATKGAVTAMTKALALDES--PYGVRVNCIS  180 (250)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             cccCcchhHHHHhhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            222222333333233456677888874  5556555443

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=95.06  E-value=0.023  Score=49.99  Aligned_cols=151  Identities=21%  Similarity=0.214  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCC----------hhhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d----------~~~al  110 (356)
                      .+.+.|+||++-+|..++..|+..|.  +|++.|+++  +.....++..     .+..+.. -+|          ..+.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVARF   77 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHHh
Confidence            34789999999999999999999998  999999976  3333333322     1111110 111          12334


Q ss_pred             CCCcEEEEcCCCCCCC-------CCc----HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHH
Q 018433          111 TGMDLVIIPAGVPRKP-------GMT----RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF  175 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~-------g~~----r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~  175 (356)
                      ...|++|..||.....       .+.    ....+..|+    ...+...+.+++.  ++-+|+++.-....        
T Consensus        78 g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~g~iI~i~S~~~~~--------  147 (276)
T d1bdba_          78 GKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS--RGNVIFTISNAGFY--------  147 (276)
T ss_dssp             SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCGGGTS--------
T ss_pred             CCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc--CCCceeeeechhcc--------
Confidence            6789999999853211       111    123344443    4455666666654  34444444322211        


Q ss_pred             HHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          176 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       176 ~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                          +.|..-.++.+.-....|-+.+|..++  +. |++-.+-
T Consensus       148 ----~~~~~~~Y~asKaal~~ltr~lA~ela--~~-IrVN~I~  183 (276)
T d1bdba_         148 ----PNGGGPLYTAAKHAIVGLVRELAFELA--PY-VRVNGVG  183 (276)
T ss_dssp             ----TTSSCHHHHHHHHHHHHHHHHHHHHHT--TT-CEEEEEE
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHhh--cc-eEEcccC
Confidence                111111223332223356677888886  33 6555544

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.04  E-value=0.1  Score=38.36  Aligned_cols=76  Identities=18%  Similarity=0.318  Sum_probs=53.5

Q ss_pred             cCCCCCCeEEEEcCCCchH-HHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEE
Q 018433           39 KGGAAGFKVAILGAAGGIG-QPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        39 ~~~~~~~KI~IIGa~G~vG-~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      |+..+.+||-+||- |-+| +++|..|...|+  +|.-.|... .....+|.+.  ...+..  +. + ++.++++|+||
T Consensus         3 ~~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~-~~~~~~L~~~--Gi~v~~--g~-~-~~~i~~~d~vV   72 (96)
T d1p3da1           3 PEMRRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIAD-GVVTQRLAQA--GAKIYI--GH-A-EEHIEGASVVV   72 (96)
T ss_dssp             CCCTTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCC-SHHHHHHHHT--TCEEEE--SC-C-GGGGTTCSEEE
T ss_pred             ccchhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCC-ChhhhHHHHC--CCeEEE--CC-c-cccCCCCCEEE
Confidence            34456679999999 6677 777999999999  999999875 2223345543  234432  22 3 45689999999


Q ss_pred             EcCCCCC
Q 018433          118 IPAGVPR  124 (356)
Q Consensus       118 i~ag~~~  124 (356)
                      .+.+.|.
T Consensus        73 ~S~AI~~   79 (96)
T d1p3da1          73 VSSAIKD   79 (96)
T ss_dssp             ECTTSCT
T ss_pred             ECCCcCC
Confidence            9988873

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.098  Score=41.96  Aligned_cols=135  Identities=15%  Similarity=0.187  Sum_probs=72.5

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCC-ChhhhhCCCcEE
Q 018433           39 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQP-QLENALTGMDLV  116 (356)
Q Consensus        39 ~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~-d~~~al~~aDiV  116 (356)
                      .+-.+..+|.|+|+ |.+|...+..+...|.  +++.+|.++ ....+..+-     .....-.... ......++.|+|
T Consensus        26 ~~~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lG-----ad~~i~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          26 WQAGPGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALG-----ADEVVNSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             TTCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHT-----CSEEEETTCHHHHHTTTTCEEEE
T ss_pred             hCCCCCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccC-----CcEEEECchhhHHHHhcCCCcee
Confidence            44566779999998 9999998888877776  667788766 323333332     1111111111 122334689999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-c--hhh
Q 018433          117 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-T--MLD  193 (356)
Q Consensus       117 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t--~ld  193 (356)
                      |.+.|.+..                  +-..+.-..|.+.++.++-|.+....+....+    -+...+++|+ +  .-|
T Consensus        98 id~~g~~~~------------------~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l----~~k~~~i~Gs~~~~~~d  155 (168)
T d1uufa2          98 LNTVAAPHN------------------LDDFTTLLKRDGTMTLVGAPATPHKSPEVFNL----IMKRRAIAGSMIGGIPE  155 (168)
T ss_dssp             EECCSSCCC------------------HHHHHTTEEEEEEEEECCCC-------CHHHH----HTTTCEEEECCSCCHHH
T ss_pred             eeeeecchh------------------HHHHHHHHhcCCEEEEeccCCCCcccccHHHH----HHCCcEEEEEeecCHHH
Confidence            998775420                  11223344588998888765543321111111    1234578887 3  334


Q ss_pred             HHHHHHHHHH
Q 018433          194 VVRANTFVAE  203 (356)
Q Consensus       194 ~~R~~~~la~  203 (356)
                      ..++-.++++
T Consensus       156 ~~e~l~l~a~  165 (168)
T d1uufa2         156 TQEMLDFCAE  165 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3344444444

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.96  E-value=0.033  Score=45.66  Aligned_cols=70  Identities=10%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHHHHhc-CCCCCeEEEEeCCCChhhhh--CCCcEEEEc
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENAL--TGMDLVIIP  119 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~-L~D~~~~~g~~~dl~~-~~~~~~v~~~~~t~d~~~al--~~aDiVIi~  119 (356)
                      ++||+|||+ |.+|...+..+...+-+ +|+ ++|.+...+.  ++.. .......+.+   +|+++.+  .+.|+|+++
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~--~~~~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAK--AFATANNYPESTKIH---GSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccc--cchhccccccceeec---CcHHHhhhccccceeeec
Confidence            369999998 99999998888766543 555 6788752211  1111 1111233433   5777766  568899987


Q ss_pred             C
Q 018433          120 A  120 (356)
Q Consensus       120 a  120 (356)
                      .
T Consensus        74 t   74 (184)
T d1ydwa1          74 L   74 (184)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.90  E-value=0.095  Score=45.01  Aligned_cols=154  Identities=19%  Similarity=0.192  Sum_probs=86.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeC-CCCh----------hhhhC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT  111 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~-t~d~----------~~al~  111 (356)
                      =|.|+||++-+|..++..|+..|.  .|++.|.+.   ++....++....  .++..+.. -+|.          .+.+.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            467889999999999999999998  888888765   233333333221  22222211 1221          12235


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 018433          112 GMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  181 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~  181 (356)
                      .-|++|..||......   .+   ....+..|+    ...+...+.+.+. ..+.||++|.-....            +.
T Consensus        79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~~------------~~  145 (244)
T d1edoa_          79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVGLI------------GN  145 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHH------------CC
T ss_pred             CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhhcC------------CC
Confidence            7899999988643221   11   223344454    4455556666554 567888876533211            23


Q ss_pred             CCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          182 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       182 ~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      |..-.++.+.-....|-+.+|..++  +..|++-.+-
T Consensus       146 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I~  180 (244)
T d1edoa_         146 IGQANYAAAKAGVIGFSKTAAREGA--SRNINVNVVC  180 (244)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHChHHHHHHHh--hhCcEEEEEe
Confidence            3333344443334457778888874  5566555543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=94.83  E-value=0.0027  Score=50.90  Aligned_cols=62  Identities=10%  Similarity=0.061  Sum_probs=34.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      |++||+ |++|++++..|.....  ...+++++.  ..+.++.+... ..      ..+..++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~--~~~~~l~~~~~-~~------~~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSI--DRARNLAEVYG-GK------AATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHHHTC-CC------CCSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCCh--hhhcchhhccc-cc------ccchhhhhccCcEEEEec
Confidence            689999 9999999987754433  234677754  22233333221 11      112357889999999985

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.83  E-value=0.011  Score=48.93  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |||+|||| |++|..+|..|...+...+|.+++.+.
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            89999999 999999999998765555999998754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.74  E-value=0.022  Score=44.58  Aligned_cols=47  Identities=21%  Similarity=0.410  Sum_probs=37.5

Q ss_pred             hhhhhhhhhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           25 MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +++..-+|++....      .||+|||| |++|.-+|..|...+.  ++.+++..+
T Consensus        22 ~~d~~~l~~~~~~~------k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          22 LEDAECIRRQLIAD------NRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             HHHHHHHHHTCCTT------CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             HHHHHHHHHhhccC------CEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            44445555555444      49999999 9999999999999887  999999876

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.74  E-value=0.018  Score=49.79  Aligned_cols=153  Identities=17%  Similarity=0.119  Sum_probs=90.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC----CCCh-------hhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQL-------ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~----t~d~-------~~al  110 (356)
                      .+++.|+||++.+|..+|..|+..|.  +|++.|++.  +.....++.     .++..+..    ..+.       .+.+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35788999999999999999999998  999999986  222222222     11111111    0111       2334


Q ss_pred             CCCcEEEEcCCCCCC-C--CCc---HHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 018433          111 TGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  183 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~p-~a~viv~tNPv~~~t~~~~~~~~~~~~~~~  183 (356)
                      ..-|++|..+|.... +  ..+   ....+..|+.....+.+....+.. ...++++|.-.....+-             
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~-------------  144 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG-------------  144 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHH-------------
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccC-------------
Confidence            679999998875432 1  112   345567888888888887777664 44555555443322110             


Q ss_pred             CCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          184 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       184 ~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      .-.++.+.-....|-+.+|+.++  +..|++-.+-
T Consensus       145 ~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I~  177 (241)
T d2a4ka1         145 LAHYAAGKLGVVGLARTLALELA--RKGVRVNVLL  177 (241)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHT--TTTCEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHHHHHh--HhCCEEeeec
Confidence            01133333334467888899985  5556555543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.73  E-value=0.015  Score=52.33  Aligned_cols=40  Identities=23%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT   85 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~   85 (356)
                      +++||+|||| |..|.+.|..|+..|.  +|.+++.+. .-|.+
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSSGGG
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCCCcCee
Confidence            3569999999 9999999999998887  999999987 44554

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.69  E-value=0.14  Score=45.46  Aligned_cols=154  Identities=13%  Similarity=0.151  Sum_probs=84.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----------chhHHHHHhcCCCCCeEEEE-eCCCChh-----
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----------TPGVTADISHMDTGAVVRGF-LGQPQLE-----  107 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----------~~g~~~dl~~~~~~~~v~~~-~~t~d~~-----  107 (356)
                      +.+.|+||++-+|..+|..|+..|.  .|++.|++.           +.....++....  ...... ....+.+     
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~   83 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GKAVANYDSVEAGEKLVKT   83 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CEEEEECCCGGGHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc--cccccccchHHHHHHHHHH
Confidence            4677889999999999999999998  899999764           111222232221  111111 1111221     


Q ss_pred             --hhhCCCcEEEEcCCCCCCCC---Cc---HHHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHH
Q 018433          108 --NALTGMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF  175 (356)
Q Consensus       108 --~al~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~  175 (356)
                        +.+-.-|++|..||......   .+   ....+..|+.    ..+...+.+++.. .+.||++|.....         
T Consensus        84 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS~~~~---------  153 (302)
T d1gz6a_          84 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASGI---------  153 (302)
T ss_dssp             HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHH---------
T ss_pred             HHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCChhhc---------
Confidence              23457999999998754221   12   2334455554    5555666666543 5778877643211         


Q ss_pred             HHhCCCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          176 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       176 ~~~~~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                       .  +.|..-.++.+.-.-..|-+.+|..++  +..|++-.+
T Consensus       154 -~--~~~~~~~Y~asKaal~~lt~~la~E~~--~~gIrVN~I  190 (302)
T d1gz6a_         154 -Y--GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHCNTI  190 (302)
T ss_dssp             -H--CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             -C--CCCCcHHHHHHHHHHHHHHHHHHHHHh--ccCCceeee
Confidence             0  222222233333333456677777763  455655444

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0078  Score=53.89  Aligned_cols=108  Identities=21%  Similarity=0.215  Sum_probs=66.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEeCCC-c-hhHHHHHhcCC-CCCeEEEEeCCCChhhhhC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN-T-PGVTADISHMD-TGAVVRGFLGQPQLENALT  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~----~~~-----~~el~L~D~~~-~-~g~~~dl~~~~-~~~~v~~~~~t~d~~~al~  111 (356)
                      ..||+|.|| |..|..++..|..    .++     .+.++++|.+- . .+..-++.... .+..........++.++++
T Consensus        25 d~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~  103 (294)
T d1pj3a1          25 EHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN  103 (294)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHH
T ss_pred             HcEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHH
Confidence            469999999 9999999877643    343     25799999865 1 21110111110 0011000011245777765


Q ss_pred             --CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 018433          112 --GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  166 (356)
Q Consensus       112 --~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~  166 (356)
                        +.|++|-+.|.+.-.              -+++.+.|.+.+++.+|+-.|||..-
T Consensus       104 ~~kptvliG~S~~~g~f--------------t~evi~~Ma~~~~~PIIFaLSNPt~~  146 (294)
T d1pj3a1         104 ILKPSTIIGVAGAGRLF--------------TPDVIRAMASINERPVIFALSNPTAQ  146 (294)
T ss_dssp             HHCCSEEEECCCSSCCS--------------CHHHHHHHHHHCSSCEEEECCSSGGG
T ss_pred             hcCCceEEEecCCCCcC--------------CHHHHHHHHhcCCCcEEEEccCCCCc
Confidence              888888887654211              24677778889999999999999753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.64  E-value=0.012  Score=48.14  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.||+|||| |..|...|..|...|+- ++.++|...
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~-~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYS-DITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCC-CEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCC-eEEEEEecC
Confidence            459999999 99999999999999872 589999876

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.63  E-value=0.015  Score=49.52  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +||+|||| |..|.+.|..|++.|+  +++++|...
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            49999999 9999999999999998  999999765

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.58  E-value=0.064  Score=44.89  Aligned_cols=90  Identities=20%  Similarity=0.180  Sum_probs=58.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC-
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV-  122 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~-  122 (356)
                      .++|+|||. |.+|+.++..+..-|.  +++.+|.....+.         ......    .++++.++.||+|++..-. 
T Consensus        45 ~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~---------~~~~~~----~~l~~l~~~~D~v~~~~plt  108 (199)
T d1dxya1          45 QQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKGD---------HPDFDY----VSLEDLFKQSDVIDLHVPGI  108 (199)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSC---------CTTCEE----CCHHHHHHHCSEEEECCCCC
T ss_pred             ceeeeeeec-ccccccccccccccce--eeeccCCccchhh---------hcchhH----HHHHHHHHhcccceeeeccc
Confidence            469999999 9999999999876565  9999998542110         111222    3577889999999997521 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      +...++-.       .       +.+....+++++||++=.
T Consensus       109 ~~T~~li~-------~-------~~l~~mk~~a~lIN~aRG  135 (199)
T d1dxya1         109 EQNTHIIN-------E-------AAFNLMKPGAIVINTARP  135 (199)
T ss_dssp             GGGTTSBC-------H-------HHHHHSCTTEEEEECSCT
T ss_pred             cccccccc-------H-------HHhhccCCceEEEecccH
Confidence            11112211       1       223334578999999743

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.1  Score=43.04  Aligned_cols=90  Identities=24%  Similarity=0.332  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|+|. |.+|..++..+..-+.  ++..+|......         ......    ..++++.++.||+|++....
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~---------~~~~~~----~~~l~ell~~sDii~i~~pl  106 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLP---------LGNATQ----VQHLSDLLNMSDVVSLHVPE  106 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCC---------CTTCEE----CSCHHHHHHHCSEEEECCCS
T ss_pred             cceEEEEeec-ccchhhhhhhcccccc--eEeeccccccch---------hhhhhh----hhhHHHHHhhccceeecccC
Confidence            4569999999 9999999998876666  999999754100         001111    24678999999999997632


Q ss_pred             -CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          123 -PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       123 -~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                       +...++-..              +.+....+++++||++=
T Consensus       107 t~~T~~li~~--------------~~l~~mk~~a~lIN~aR  133 (188)
T d1sc6a1         107 NPSTKNMMGA--------------KEISLMKPGSLLINASR  133 (188)
T ss_dssp             STTTTTCBCH--------------HHHHHSCTTEEEEECSC
T ss_pred             CcchhhhccH--------------HHHhhCCCCCEEEEcCc
Confidence             222232111              12334457999999973

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.51  E-value=0.017  Score=49.31  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |+||+|||| |..|.++|..|.+.|+. .+.+++...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi~-~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGIG-KVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            689999999 99999999999998842 788999865

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.075  Score=43.01  Aligned_cols=70  Identities=14%  Similarity=0.269  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      .+.++|.|+|| |-++.++++.|...+.  +|.+++++.  ++..+..+.+.   ..+...  +.+ .....++|+||.+
T Consensus        16 ~~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~---~~~~~~--~~~-~~~~~~~dliIN~   86 (170)
T d1nyta1          16 RPGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT---GSIQAL--SMD-ELEGHEFDLIINA   86 (170)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG---SSEEEC--CSG-GGTTCCCSEEEEC
T ss_pred             CCCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc---cccccc--ccc-cccccccceeecc
Confidence            34579999999 8899999999998886  799999875  22223222221   233332  122 2235789999997


Q ss_pred             C
Q 018433          120 A  120 (356)
Q Consensus       120 a  120 (356)
                      .
T Consensus        87 T   87 (170)
T d1nyta1          87 T   87 (170)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.41  E-value=0.031  Score=42.95  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .+|+|||| |++|.-+|..|...+.  ++.|++..+
T Consensus        31 ~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          31 SRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            49999999 9999999999999887  999999876

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.37  E-value=0.033  Score=48.09  Aligned_cols=38  Identities=16%  Similarity=0.084  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           41 GAAGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .-+.+++.|+||+|.  +|.++|..|+..|.  +|+|.+.+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            345678999997664  99999999999997  899999876

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.37  E-value=0.06  Score=46.37  Aligned_cols=158  Identities=14%  Similarity=0.180  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCC---h-------hhhh
Q 018433           44 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---L-------ENAL  110 (356)
Q Consensus        44 ~~KI~IIGa~G--~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d---~-------~~al  110 (356)
                      .+++.|+||+|  -+|..+|..|+..|.  +|++.|+++ ....+.++......... ....-+|   .       .+.+
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~v~~~~~~~~~~~   84 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALL-FRADVTQDEELDALFAGVKEAF   84 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEE-EECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccc-cccccCCHHHHHHHHHHHHHhc
Confidence            35789999966  499999999999998  899999887 33333333322111111 1111112   1       2224


Q ss_pred             CCCcEEEEcCCCCCC---C----CCcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC
Q 018433          111 TGMDLVIIPAGVPRK---P----GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  179 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~---~----g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~t~~~~~~~~~~~  179 (356)
                      -.-|++|..+|....   .    ..+.   ...+..|+.....+++.....- ..+.|++++.-....            
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~------------  152 (256)
T d1ulua_          85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK------------  152 (256)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS------------
T ss_pred             CCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC------------
Confidence            568999998876321   1    1222   2234566666666665554332 356777775433211            


Q ss_pred             CCCCCCEEEechhhHHHHHHHHHHHhCCCCCCCcccEEe
Q 018433          180 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  218 (356)
Q Consensus       180 ~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG  218 (356)
                      +.|..-.++.+.-.-..+-+.+|..++  +..|++-.+-
T Consensus       153 ~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~I~  189 (256)
T d1ulua_         153 VVPKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAIS  189 (256)
T ss_dssp             BCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhc--ccCCEEeeec
Confidence            122222233333233346677888874  5566555443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.20  E-value=0.02  Score=45.63  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +||+|||| |++|..+|..|...+.-.+|+|+|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            49999999 999999999998766545999999876

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.08  E-value=0.018  Score=46.29  Aligned_cols=70  Identities=19%  Similarity=0.402  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      -||+|+||+|.+|.-+...|...+ ...++.++..+...|..  +...  ........   ..+..+.++|+++++.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~--~~~~--~~~~~~~~---~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS--LKFK--DQDITIEE---TTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCE--EEET--TEEEEEEE---CCTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccc--cccc--CCcccccc---cchhhhhhhhhhhhccC
Confidence            389999999999999998887775 36688888754422221  1111  12222221   12356889999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.05  E-value=0.037  Score=42.55  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +..+|+|||| |++|.-+|..|...|.  ++.+++..+
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            3459999999 9999999999999887  999998865

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.075  Score=43.52  Aligned_cols=76  Identities=20%  Similarity=0.239  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chh----HHHHHhcCCCCCeEEEEeCC--CChhhhhCCCcE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPG----VTADISHMDTGAVVRGFLGQ--PQLENALTGMDL  115 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g----~~~dl~~~~~~~~v~~~~~t--~d~~~al~~aDi  115 (356)
                      +..+|.|+|+ |-+|.++++.|...+. .+|++++++. ...    .+.++... ....+......  .++.+.+.++|+
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhhcccce
Confidence            4569999999 8899999999988764 5999999976 212    22223221 12233332111  234456789999


Q ss_pred             EEEcCC
Q 018433          116 VIIPAG  121 (356)
Q Consensus       116 VIi~ag  121 (356)
                      ||.+..
T Consensus        94 iIN~Tp   99 (182)
T d1vi2a1          94 LTNGTK   99 (182)
T ss_dssp             EEECSS
T ss_pred             eccccC
Confidence            999753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.90  E-value=0.24  Score=39.14  Aligned_cols=119  Identities=15%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhh----hhCCCcE
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLEN----ALTGMDL  115 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~----al~~aDi  115 (356)
                      ..+..+|+|+|+ |.+|...+..+...+.  +++.+|.++ ....+.++   .  ...-......|..+    ...+.|.
T Consensus        25 ~~~g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~~---G--a~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          25 AKPGEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKEL---G--ADLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             CCTTCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---T--CSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhhc---C--cceecccccchhhhhcccccCCCce
Confidence            445569999998 9999988888877776  889999876 22233222   1  12111111233322    2466777


Q ss_pred             EEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEec
Q 018433          116 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  190 (356)
Q Consensus       116 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t  190 (356)
                      +|+.++.+            .      .+-..++-..|.+.++++..|.+....-...++.     ...+++|..
T Consensus        97 ~v~~~~~~------------~------~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~-----~~~~i~gs~  148 (168)
T d1rjwa2          97 AVVTAVSK------------P------AFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVL-----NGIKIIGSI  148 (168)
T ss_dssp             EEESSCCH------------H------HHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHH-----TTCEEEECC
T ss_pred             EEeecCCH------------H------HHHHHHHHhccCCceEecccccCCCCCCHHHHHH-----CCcEEEEEe
Confidence            88776422            0      1222233345899988886554433211112222     135788874

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.90  E-value=0.17  Score=42.99  Aligned_cols=103  Identities=20%  Similarity=0.218  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----------chhHHHHHhcCCCCCeEEEEeCCCChhhhhC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----------TPGVTADISHMDTGAVVRGFLGQPQLENALT  111 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~----------~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~  111 (356)
                      .+..||.+.|| |..|..++..+...+. ++++++|.+-          ......++.+......     ...++.++++
T Consensus        24 l~d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~   96 (222)
T d1vl6a1          24 IEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPER-----LSGDLETALE   96 (222)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-----CCSCHHHHHT
T ss_pred             hhhcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchh-----hhcchHhhcc
Confidence            34579999999 9999999998877654 5999999874          1111222222211111     1246789999


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHH
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP  169 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~  169 (356)
                      ++|+++-+..    +|.-+.              +.+.+.++..+|+-.|||..-...
T Consensus        97 g~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e~  136 (222)
T d1vl6a1          97 GADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEIDP  136 (222)
T ss_dssp             TCSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSCH
T ss_pred             Ccceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchhh
Confidence            9998777653    232221              245667889999999999876543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.87  E-value=0.021  Score=49.24  Aligned_cols=32  Identities=19%  Similarity=0.361  Sum_probs=29.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      -|+|||| |-+|.++|+.|++.|.  +|+++|.++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999999 9999999999999997  999999865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.86  E-value=0.076  Score=43.22  Aligned_cols=100  Identities=17%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             ccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhh------
Q 018433           38 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------  110 (356)
Q Consensus        38 ~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------  110 (356)
                      ..+-.+.-+|+|+|+ |.+|...+..+...+. ..|+.+|.++ ....+.++-     ....+-....++.+.+      
T Consensus        22 ~a~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lG-----a~~~i~~~~~~~~~~v~~~t~g   94 (174)
T d1jqba2          22 LADIEMGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYG-----ATDILNYKNGHIEDQVMKLTNG   94 (174)
T ss_dssp             HTTCCTTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHT-----CSEEECGGGSCHHHHHHHHTTT
T ss_pred             HhCCCCCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhC-----ccccccccchhHHHHHHHHhhc
Confidence            344556679999998 9999988887776664 3789999976 333344332     1111101123333332      


Q ss_pred             CCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      +++|+||.+.|.+.                  -+-..++-..|++.++.++.
T Consensus        95 ~G~D~vid~~g~~~------------------~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          95 KGVDRVIMAGGGSE------------------TLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             SCEEEEEECSSCTT------------------HHHHHHHHEEEEEEEEECCC
T ss_pred             cCcceEEEccCCHH------------------HHHHHHHHHhcCCEEEEEee
Confidence            45999999987541                  01112233358999888763

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=93.80  E-value=0.078  Score=44.27  Aligned_cols=73  Identities=15%  Similarity=0.183  Sum_probs=47.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEEEe---------------------C
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFL---------------------G  102 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~---------------------~  102 (356)
                      +||.|||. |..|+.++..+...++ ..+.+.+|.+.     .+|.+.....++..-.                     .
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL-----QVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH-----HHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH-----HHHhcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            68999999 9999999988877653 34889999864     2233322111111100                     0


Q ss_pred             CCChhhhhCCCcEEEEcCCCC
Q 018433          103 QPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus       103 t~d~~~al~~aDiVIi~ag~~  123 (356)
                      .....+.+.++|+||+++|..
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlG   95 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFG   95 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETT
T ss_pred             HHHHHHHhcCCCeEEEEEecC
Confidence            114556789999999998765

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.75  E-value=0.038  Score=41.97  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |.||+|||| |.+|.-+|..|...|.  ++.+++..+
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            569999999 9999999999998887  999999876

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.74  E-value=0.032  Score=49.95  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +||+|||| |..|.+.|..|+..+...++++++.+.
T Consensus         5 KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            47999999 999999999998887767999999876

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.73  E-value=0.04  Score=41.75  Aligned_cols=34  Identities=15%  Similarity=0.166  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |.||+|||| |.+|.-+|..|...|.  ++.|++..+
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            579999999 9999999999998887  999999876

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.65  E-value=0.16  Score=41.21  Aligned_cols=96  Identities=19%  Similarity=0.172  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhh---hh------C
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLEN---AL------T  111 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~---al------~  111 (356)
                      ++.-+|.|+|| |.+|...+..+...|. ..|+.+|.++ ....+.++-     ....+-...++..+   .+      .
T Consensus        27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~lG-----a~~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          27 FAGKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEIG-----ADLTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             CBTCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHTT-----CSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECC-Cccchhheeccccccc-cccccccccccccccccccc-----ceEEEeccccchHHHHHHHHHhhCCC
Confidence            34469999998 9999988888877774 3899999976 333333331     11111111233222   11      3


Q ss_pred             CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Q 018433          112 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       112 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                      ++|+||-+.|.+.               .+   -..++-..|++.++.+..
T Consensus       100 g~Dvvid~vG~~~---------------~~---~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         100 GADFILEATGDSR---------------AL---LEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             CEEEEEECSSCTT---------------HH---HHHHHHEEEEEEEEECCC
T ss_pred             CceEEeecCCchh---------------HH---HHHHHHhcCCCEEEEEee
Confidence            6899999987542               01   112233358898887754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.62  E-value=0.26  Score=35.61  Aligned_cols=71  Identities=24%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             CCeEEEEcCCCchH-HHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           44 GFKVAILGAAGGIG-QPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        44 ~~KI~IIGa~G~vG-~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      .|||-+||- |-+| +.+|..|...|+  .|.-.|..... ....|+...  ..+  +.+ .+ .+.++++|+||.+.++
T Consensus         1 ~~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~t~~L~~~G--i~i--~~g-h~-~~~i~~~d~vV~SsAI   70 (89)
T d1j6ua1           1 HMKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETE-RTAYLRKLG--IPI--FVP-HS-ADNWYDPDLVIKTPAV   70 (89)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTT--CCE--ESS-CC-TTSCCCCSEEEECTTC
T ss_pred             CcEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCCh-hHHHHHHCC--CeE--Eee-ec-ccccCCCCEEEEecCc
Confidence            489999999 6677 578889999999  99999987522 223355543  223  222 23 3568999999999887


Q ss_pred             CC
Q 018433          123 PR  124 (356)
Q Consensus       123 ~~  124 (356)
                      |.
T Consensus        71 ~~   72 (89)
T d1j6ua1          71 RD   72 (89)
T ss_dssp             CT
T ss_pred             CC
Confidence            73

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.59  E-value=0.12  Score=42.45  Aligned_cols=72  Identities=15%  Similarity=0.194  Sum_probs=47.6

Q ss_pred             CCCeEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHH---HHHhcCCCCCeEEEEeCCCChhhhhCCCcE
Q 018433           43 AGFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVT---ADISHMDTGAVVRGFLGQPQLENALTGMDL  115 (356)
Q Consensus        43 ~~~KI~IIGa-~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~---~dl~~~~~~~~v~~~~~t~d~~~al~~aDi  115 (356)
                      +..||+++|= ..+|..+++..+..-|.  ++.++-...   .....   .++.... ...+..   ++|+++|++++|+
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~d~~eai~~aDv   77 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEES-GAKLTL---TEDPKEAVKGVDF   77 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHH-TCEEEE---ESCHHHHTTTCSE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhcc-CCeEEE---EeChhhccccccE
Confidence            3579999995 23688888887777776  999998754   12222   2222211 244554   3688999999999


Q ss_pred             EEEcC
Q 018433          116 VIIPA  120 (356)
Q Consensus       116 VIi~a  120 (356)
                      |....
T Consensus        78 Vyt~~   82 (185)
T d1dxha2          78 VHTDV   82 (185)
T ss_dssp             EEECC
T ss_pred             EEeeh
Confidence            88754

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=93.49  E-value=0.025  Score=50.72  Aligned_cols=107  Identities=13%  Similarity=0.168  Sum_probs=64.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEeCCC-chhHHHHHhcC--CCCCeEEEEeCCCChhhhh
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN-TPGVTADISHM--DTGAVVRGFLGQPQLENAL  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~----~~~~-----~el~L~D~~~-~~g~~~dl~~~--~~~~~v~~~~~t~d~~~al  110 (356)
                      ...||+|.|| |..|..++..|+.    .|+.     ..++++|.+- ......|+...  .+.....   ..+++.+++
T Consensus        24 ~d~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~~~~---~~~~l~~~i   99 (308)
T d1o0sa1          24 SQEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMP---ETTSILEVI   99 (308)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSC---CCCCHHHHH
T ss_pred             HHcEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHHhcc---cCCcHHHHH
Confidence            3469999999 9999998876643    3432     4699999865 11111233221  1111111   123455555


Q ss_pred             CCC--cEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 018433          111 TGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  167 (356)
Q Consensus       111 ~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~  167 (356)
                      +.+  +++|-+.+.+   |.-           -+++.+.+.+.+++.+|+-.|||..-.
T Consensus       100 ~~~kptvliG~s~~~---g~f-----------t~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1         100 RAARPGALIGASTVR---GAF-----------NEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             HHHCCSEEEECSSCT---TCS-----------CHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             hccccccEEeccccc---CCC-----------CHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence            433  5666665544   221           235667788899999999999998633

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.48  E-value=0.045  Score=41.74  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .+.||+|||| |.+|.-+|..|...|.  ++.|++..+
T Consensus        21 ~p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          21 ESKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            3579999999 9999999999987776  999999865

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.038  Score=47.41  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ++.||+|||| |.-|.+.|..|...|+  +|.+++-+.
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            4459999999 9999999999999998  999998765

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.31  E-value=0.18  Score=40.41  Aligned_cols=73  Identities=11%  Similarity=0.116  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcC---CCCCeEEEEeCCCChhhhhCCCcEEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM---DTGAVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~---~~~~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      +..||+++|-..+|..+++..+..-|.  ++.++-...  ......+....   .....+..+   .|+.+|+++||+|.
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~ea~~~adviy   77 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAESGGSFELL---HDPVKAVKDADVIY   77 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEE---SCHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcccceEEEe---cCHHHHhhhccEEe
Confidence            467999999966777777777776676  899998765  22222211111   012345543   57889999999988


Q ss_pred             EcC
Q 018433          118 IPA  120 (356)
Q Consensus       118 i~a  120 (356)
                      .+-
T Consensus        78 ~~~   80 (163)
T d1pvva2          78 TDV   80 (163)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            764

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.25  E-value=0.14  Score=43.19  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~   80 (356)
                      .||.|||. |..|..++..+...++ ..+.+.+|.+.
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~   51 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA   51 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH
Confidence            39999999 9999999998887664 35888999864

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.25  E-value=0.02  Score=47.16  Aligned_cols=79  Identities=19%  Similarity=0.231  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEE
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      .+.++|+|||-+.-||..++..|...+-  .+.++|++..    ......+.+.. ...+..+ ..+++++..+.||+||
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHH-VEDLGEY-SEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCE-EEEEEEC-CHHHHHHHHHHCSEEE
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeec-ccccccc-chhHHhhccccCCEEE
Confidence            3456999999977899999999998876  7888887641    11111122211 1122222 1134677788999999


Q ss_pred             EcCCCCC
Q 018433          118 IPAGVPR  124 (356)
Q Consensus       118 i~ag~~~  124 (356)
                      ...|.|.
T Consensus       103 savG~p~  109 (171)
T d1edza1         103 TGVPSEN  109 (171)
T ss_dssp             ECCCCTT
T ss_pred             EccCCCc
Confidence            9998764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.20  E-value=0.037  Score=46.56  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .||+|||| |..|.+.|..|...+...+|.+||..+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            39999999 999999999987764434999999876

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.20  E-value=0.14  Score=41.58  Aligned_cols=70  Identities=20%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      +..+|.|+|+ |-++.++++.|...+  .+|++++++.  ++..+..+...   ..+....  .+ ...+.++|+||.+.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~--~~-~~~~~~~diiIN~t   87 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---GNIQAVS--MD-SIPLQTYDLVINAT   87 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---SCEEEEE--GG-GCCCSCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhc---cccchhh--hc-cccccccceeeecc
Confidence            4568999999 889999999988754  4999999976  34444444422   2333321  22 23578999999985


Q ss_pred             C
Q 018433          121 G  121 (356)
Q Consensus       121 g  121 (356)
                      .
T Consensus        88 p   88 (171)
T d1p77a1          88 S   88 (171)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.19  Score=40.57  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++++|+|- |.+|..+|..+...+-  .+..+|+++..+... ..+.   -.+      ..+++++..+|+||.+.|.
T Consensus        23 ~Gk~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG---~~v------~~~~~a~~~adivvtaTGn   89 (163)
T d1li4a1          23 AGKVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEG---YEV------TTMDEACQEGNIFVTTTGC   89 (163)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTT---CEE------CCHHHHTTTCSEEEECSSC
T ss_pred             cCCEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCc---eEe------eehhhhhhhccEEEecCCC
Confidence            3458999999 9999999999997776  999999987333221 1221   111      2357899999999998764


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCCccH
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTV  168 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv~~~t  168 (356)
                      ..-  .++               +.+++.-+.+++.|++ -...+-+
T Consensus        90 ~~v--I~~---------------eh~~~MKdgaIL~N~Ghfd~EId~  119 (163)
T d1li4a1          90 IDI--ILG---------------RHFEQMKDDAIVCNIGHFDVEIDV  119 (163)
T ss_dssp             SCS--BCH---------------HHHTTCCTTEEEEECSSSTTSBCH
T ss_pred             ccc--hhH---------------HHHHhccCCeEEEEeccccceecH
Confidence            321  111               2233344678888886 4455554

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.21  Score=43.27  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=69.2

Q ss_pred             CeEE-EEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCC----------hhhhh
Q 018433           45 FKVA-ILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ----------LENAL  110 (356)
Q Consensus        45 ~KI~-IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d----------~~~al  110 (356)
                      ++|+ |+||++-+|..+|..|+.. +.  .|++.+++.  ++..+.++............ .-+|          ..+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~-Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQL-DIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEEC-CTTCHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEE-ecCCHHHHHHHHHHHHHhc
Confidence            5785 6799899999999998864 65  899999987  34444555543211111111 1122          12234


Q ss_pred             CCCcEEEEcCCCCCC-CC--CcH---HHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecC
Q 018433          111 TGMDLVIIPAGVPRK-PG--MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  162 (356)
Q Consensus       111 ~~aDiVIi~ag~~~~-~g--~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~viv~tN  162 (356)
                      ..-|++|..||.... +.  .+.   ...+..|......+.+.+-..- +.+.||+++.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            679999999986432 21  122   2345567666666666665443 3577777765

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.15  E-value=0.053  Score=41.53  Aligned_cols=34  Identities=15%  Similarity=0.199  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |.|++|||| |.+|.-+|..|...|.  ++.+++..+
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            569999999 9999999999998777  999999866

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.14  E-value=0.03  Score=46.86  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=27.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVV   79 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~----~~el~L~D~~   79 (356)
                      |||+|||| |-+|.+.|+.|++.++    +.++.+++..
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            79999999 9999999999998753    3466666643

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.10  E-value=0.13  Score=41.11  Aligned_cols=72  Identities=21%  Similarity=0.255  Sum_probs=47.1

Q ss_pred             CCCeEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhHHH---HHhcCCCCCeEEEEeCCCChhhhhCCCcE
Q 018433           43 AGFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDL  115 (356)
Q Consensus        43 ~~~KI~IIGa-~G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~~~---dl~~~~~~~~v~~~~~t~d~~~al~~aDi  115 (356)
                      +..||+++|= ..+|..+++..+..-|.  ++++.-...  . .....   ++.... ...+..   ++|+++++++||+
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~-~~~i~~---~~d~~~ai~~aDv   75 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKET-DGSVSF---TSNLEEALAGADV   75 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHH-CCEEEE---ESCHHHHHTTCSE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhc-CCceEE---EecHHHhhhhhhh
Confidence            4569999994 24688888777777776  888887654  1 11111   111111 235554   3688999999999


Q ss_pred             EEEcC
Q 018433          116 VIIPA  120 (356)
Q Consensus       116 VIi~a  120 (356)
                      |....
T Consensus        76 iyt~~   80 (161)
T d1vlva2          76 VYTDV   80 (161)
T ss_dssp             EEECC
T ss_pred             eeccc
Confidence            99864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.95  E-value=0.024  Score=47.54  Aligned_cols=37  Identities=14%  Similarity=0.147  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~-----~~el~L~D~~~   80 (356)
                      +|.||+|||| |..|.+.|+.|+..|+     .-++.++|..+
T Consensus         1 rp~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           1 RPYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            4679999999 9999999999987652     24899999876

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.93  E-value=0.46  Score=40.51  Aligned_cols=115  Identities=19%  Similarity=0.155  Sum_probs=64.8

Q ss_pred             eEEEE-cCCCchHHHHHHHHHh---CCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeC-CCCh---hhhh-----
Q 018433           46 KVAIL-GAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-----  110 (356)
Q Consensus        46 KI~II-Ga~G~vG~~~a~~l~~---~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~al-----  110 (356)
                      ||+|| ||++-+|..+|..|+.   .|.  .|++.|+++  ++..+.++.......++..+.. -+|.   ++.+     
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            56555 9988999999999986   455  999999976  4444555543322234444322 1232   1111     


Q ss_pred             ------CCCcEEEEcCCCCC--CCC----Cc---HHHHHHHHHHHHHHHHHHHHHhC-----CCcEEEEecC
Q 018433          111 ------TGMDLVIIPAGVPR--KPG----MT---RDDLFNINAGIVRTLCEGIAKCC-----PNATVNLISN  162 (356)
Q Consensus       111 ------~~aDiVIi~ag~~~--~~g----~~---r~~~~~~N~~i~~~i~~~i~~~~-----p~a~viv~tN  162 (356)
                            -+-|++|..+|...  ..+    .+   ....+..|+.....+.+.+..+-     +.+.|++++.
T Consensus        85 ~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS  156 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             hhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccc
Confidence                  13456777777532  111    12   23455667766666666555443     2356777653

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=92.91  E-value=0.04  Score=49.15  Aligned_cols=106  Identities=16%  Similarity=0.187  Sum_probs=64.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEeCCC-chhHHHHHhcCC--CCCeEEEEeCCCChhhhh
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN-TPGVTADISHMD--TGAVVRGFLGQPQLENAL  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~----~~~-----~~el~L~D~~~-~~g~~~dl~~~~--~~~~v~~~~~t~d~~~al  110 (356)
                      +..||+|.|| |..|..++..|+.    .|+     ...++|+|.+- ......|+.+..  +.....   ...++.+.+
T Consensus        24 ~d~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~~~~---~~~~l~~~i   99 (298)
T d1gq2a1          24 SDHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHC---EMKNLEDIV   99 (298)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCC---CCCCHHHHH
T ss_pred             HHcEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHHHhh---hhhhhHHHh
Confidence            3469999999 9999998876642    233     25899999876 211112332221  101111   113444555


Q ss_pred             C--CCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 018433          111 T--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  166 (356)
Q Consensus       111 ~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~  166 (356)
                      +  ..+++|-+.+.+   |.-           -+++.+.+.+.+++.+|+-.|||..-
T Consensus       100 ~~vkptvliG~s~~~---g~f-----------t~evv~~ma~~~~~PIIFaLSNPt~~  143 (298)
T d1gq2a1         100 KDIKPTVLIGVAAIG---GAF-----------TQQILQDMAAFNKRPIIFALSNPTSK  143 (298)
T ss_dssp             HHHCCSEEEECSCCT---TCS-----------CHHHHHHHHHHCSSCEEEECCSSGGG
T ss_pred             hccChheeEeccccc---CcC-----------CHHHHHHHHhhCCCCEEEEccCCCCc
Confidence            4  366777776554   321           23566677789999999999999753

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.12  Score=41.88  Aligned_cols=56  Identities=21%  Similarity=0.460  Sum_probs=43.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ..++|+|||.+.-||..++..|...+.  .+..++..                       |.++++-+++||+||.++|.
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G~   90 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVGK   90 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSCC
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhccC
Confidence            356999999977899999999988775  56666532                       34566778999999999886


Q ss_pred             C
Q 018433          123 P  123 (356)
Q Consensus       123 ~  123 (356)
                      |
T Consensus        91 p   91 (166)
T d1b0aa1          91 P   91 (166)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.2  Score=40.80  Aligned_cols=56  Identities=20%  Similarity=0.400  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      ...+|+|||.+.-||..++..|...+-  .+.+++..                       |.++++-+++||+||.+.|.
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~-----------------------t~~l~~~~~~aDivi~a~G~   92 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSK-----------------------TAHLDEEVNKGDILVVATGQ   92 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSSHHHHHTTCSEEEECCCC
T ss_pred             ccceEEEEecCCccchHHHHHHHhccC--ceEEEecc-----------------------cccHHHHHhhccchhhcccc
Confidence            456999999988899999999998876  77777753                       23445556778888777775


Q ss_pred             C
Q 018433          123 P  123 (356)
Q Consensus       123 ~  123 (356)
                      |
T Consensus        93 ~   93 (170)
T d1a4ia1          93 P   93 (170)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.80  E-value=0.078  Score=47.67  Aligned_cols=69  Identities=10%  Similarity=0.060  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ...++|||+ |..+...+..+...-.+.+|.++|++.  .+..+.++.+..  ..+..     +..+++++||+|+.+.
T Consensus       125 ~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~--~~~~~-----~~~~a~~~aDiV~taT  195 (320)
T d1omoa_         125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISASV-----QPAEEASRCDVLVTTT  195 (320)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEEE-----CCHHHHTSSSEEEECC
T ss_pred             ccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcC--Ccccc-----chhhhhccccEEEEec
Confidence            458999999 988888777666544478999999876  445555555432  22322     2357899999998753

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.75  E-value=0.23  Score=39.35  Aligned_cols=100  Identities=20%  Similarity=0.228  Sum_probs=59.3

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhh----CCCc
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL----TGMD  114 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al----~~aD  114 (356)
                      +-.+..+|.|+|+ |.+|...+..+...|.  +++.+|.++ ....+.++-     ....+-....|..+.+    .+.|
T Consensus        24 ~~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~G-----a~~~i~~~~~~~~~~~~~~~~g~~   95 (166)
T d1llua2          24 NARPGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLG-----ASLTVNARQEDPVEAIQRDIGGAH   95 (166)
T ss_dssp             TCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT-----CSEEEETTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccC-----ccccccccchhHHHHHHHhhcCCc
Confidence            3455679999998 9999998888888775  899999876 333333331     1111111223443333    4566


Q ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 018433          115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  165 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~  165 (356)
                      .+|+..+.+            .      .+-..++-..|.+.+++++.|.+
T Consensus        96 ~~i~~~~~~------------~------~~~~~~~~l~~~G~iv~~G~~~~  128 (166)
T d1llua2          96 GVLVTAVSN------------S------AFGQAIGMARRGGTIALVGLPPG  128 (166)
T ss_dssp             EEEECCSCH------------H------HHHHHHTTEEEEEEEEECCCCSS
T ss_pred             ccccccccc------------h------HHHHHHHHhcCCcEEEEEEecCC
Confidence            677765422            0      11123333458899988876544

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.74  E-value=0.16  Score=40.82  Aligned_cols=67  Identities=16%  Similarity=0.246  Sum_probs=43.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      +..||.|+|+ |-++.++++.|...+. .+|.+++++..++  ..|.+...  . ...   .++  ...++|+||.+..
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~ka--~~L~~~~~--~-~~~---~~~--~~~~~DliINaTp   82 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVKTG--QYLAALYG--Y-AYI---NSL--ENQQADILVNVTS   82 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHHHH--HHHHHHHT--C-EEE---SCC--TTCCCSEEEECSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHHHH--HHHHHhhh--h-hhh---hcc--cccchhhheeccc
Confidence            4569999999 9999999999988774 4899999875222  22222111  1 111   111  2368999999743

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.71  E-value=0.038  Score=45.46  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=29.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|||| |..|.+.|..|.+.|+ .+|+++|...
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            8999999 9999999999999885 2699999865

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.66  E-value=0.03  Score=48.61  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|||| |.+|.++|..|...|+  ++.++|...
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            7999999 9999999999999998  999999865

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.47  E-value=0.067  Score=45.27  Aligned_cols=36  Identities=28%  Similarity=0.327  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ..+.||+|||| |..|.+.|..|...++  ++.++|...
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            34569999999 9999999999999998  999999866

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.47  E-value=0.059  Score=40.69  Aligned_cols=34  Identities=15%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |.|++|||| |.+|.-+|..|...|.  ++.|++..+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            469999999 9999999999988887  999999865

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.34  E-value=0.23  Score=40.01  Aligned_cols=98  Identities=16%  Similarity=0.292  Sum_probs=58.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhC-----CCc
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALT-----GMD  114 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~-----~aD  114 (356)
                      -.+..+|.|+|+ |.+|...+..+...+. ..++..|.++ ....+.++--    ..+-. ....|+.+.++     +.|
T Consensus        26 ~~~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga----~~~i~-~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          26 VTPASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA----THVIN-SKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCTTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC----SEEEE-TTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC----eEEEe-CCCcCHHHHHHHHcCCCCc
Confidence            445678999998 9999999888776664 2677888876 3334444421    12211 12344544432     489


Q ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      +||.+.|.+            .   .+.   ..++-..|.+.+++++.|
T Consensus        99 ~vid~~G~~------------~---~~~---~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2          99 FALESTGSP------------E---ILK---QGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             EEEECSCCH------------H---HHH---HHHHTEEEEEEEEECCCC
T ss_pred             EEEEcCCcH------------H---HHH---HHHhcccCceEEEEEeec
Confidence            999987643            0   111   122234588998887643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.18  E-value=0.1  Score=39.66  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .+|+|||| |++|.-+|..|...+.  ++.|++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            39999999 9999999999998887  999999876

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.12  E-value=0.059  Score=41.29  Aligned_cols=34  Identities=15%  Similarity=-0.043  Sum_probs=29.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |.|++|||| |.+|.-+|..|...|.  ++.++..+.
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            468999999 9999999999998876  888887665

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=92.05  E-value=0.084  Score=44.67  Aligned_cols=71  Identities=17%  Similarity=0.118  Sum_probs=42.1

Q ss_pred             CCCeEEEEcCCCchHH-HHHHHHHhCCCCcEEE-EEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhC--CCcEE
Q 018433           43 AGFKVAILGAAGGIGQ-PLAMLMKINPLVSVLH-LYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~-~~a~~l~~~~~~~el~-L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~aDiV  116 (356)
                      ++.||+|||+ |.+|. +++..+...+.+ +|+ ++|++.  ++..+.++. .. ...+..   .+|+++.++  +.|+|
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~-i~-~~~~~~---~~d~~ell~~~~iD~V  104 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYG-VD-PRKIYD---YSNFDKIAKDPKIDAV  104 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTT-CC-GGGEEC---SSSGGGGGGCTTCCEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhc-cc-cccccc---cCchhhhcccccceee
Confidence            3469999999 99996 455555444433 555 899876  222222221 11 123333   357777674  57889


Q ss_pred             EEcC
Q 018433          117 IIPA  120 (356)
Q Consensus       117 Ii~a  120 (356)
                      +++.
T Consensus       105 ~I~t  108 (221)
T d1h6da1         105 YIIL  108 (221)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            8874

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.098  Score=40.05  Aligned_cols=34  Identities=21%  Similarity=0.098  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |.||+|||+ |.+|.-+|..|...+.  ++.+++..+
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            469999999 9999999999998887  999999876

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.11  Score=39.19  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .||+|+|+ |+.|.-++.....-|+  +++.+|.++
T Consensus        12 ~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          12 TRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            58999999 9999999998887788  999999875

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=91.54  E-value=0.14  Score=38.50  Aligned_cols=35  Identities=9%  Similarity=0.100  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ++.+|+|||+ |.+|.-+|..|...+.  ++.+++..+
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            4579999999 9999999999988776  999999865

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.44  E-value=0.073  Score=46.39  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +|+|||| |-+|.++|+.|+..|.- +|+|+|.+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~~-~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGWN-NITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCC-CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCC-cEEEEeCCC
Confidence            8999999 99999999999988742 699999864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.074  Score=37.74  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=28.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ++|+|+|+ |+.|+-++.....-|+  +++.+|.+.
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            48999999 9999998888776677  999999875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.38  E-value=0.27  Score=40.54  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             ccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhh------
Q 018433           38 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------  110 (356)
Q Consensus        38 ~~~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------  110 (356)
                      ..+-.+...|.|+|| |.+|...+..+...+. ..|+.+|.++ ....+.++     ..........+|+.+.+      
T Consensus        20 ~a~v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~-----Ga~~~~~~~~~~~~~~i~~~t~g   92 (195)
T d1kola2          20 TAGVGPGSTVYVAGA-GPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQ-----GFEIADLSLDTPLHEQIAALLGE   92 (195)
T ss_dssp             HTTCCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT-----TCEEEETTSSSCHHHHHHHHHSS
T ss_pred             HhCCCCCCEEEEECc-CHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhc-----cccEEEeCCCcCHHHHHHHHhCC
Confidence            345566779999998 9999777777666553 4899999876 22233222     12222211223443333      


Q ss_pred             CCCcEEEEcCCCC
Q 018433          111 TGMDLVIIPAGVP  123 (356)
Q Consensus       111 ~~aDiVIi~ag~~  123 (356)
                      .++|++|.+.|.+
T Consensus        93 ~g~D~vid~vG~~  105 (195)
T d1kola2          93 PEVDCAVDAVGFE  105 (195)
T ss_dssp             SCEEEEEECCCTT
T ss_pred             CCcEEEEECcccc
Confidence            4799999988754

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.37  E-value=0.37  Score=40.83  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=48.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHHHHhcCCCCCeEEEEeCC---CC-----------hhhh
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQ---PQ-----------LENA  109 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~---~~g~~~dl~~~~~~~~v~~~~~t---~d-----------~~~a  109 (356)
                      ..|+||++-+|.+++..|+..|.  +|++.|++.   .+..+.++...............   .+           ..+.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            36889988999999999999998  999999886   23334445433221111111001   01           1123


Q ss_pred             hCCCcEEEEcCCCC
Q 018433          110 LTGMDLVIIPAGVP  123 (356)
Q Consensus       110 l~~aDiVIi~ag~~  123 (356)
                      +...|++|..+|..
T Consensus        82 ~g~iDilvnnAG~~   95 (266)
T d1mxha_          82 FGRCDVLVNNASAY   95 (266)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             hCCCCEEEECCccC
Confidence            45699999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.34  E-value=0.13  Score=39.06  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .|.||+|||| |.+|.-+|..|...|.  ++.++...+
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            3579999999 9999999999998877  888888765

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.33  E-value=0.25  Score=38.77  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=28.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   78 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~   78 (356)
                      +.++|.|||| |.+|..-+..|+..|-  +|++++.
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeC
Confidence            3468999999 9999999999998886  8899965

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.11  E-value=0.19  Score=40.54  Aligned_cols=69  Identities=22%  Similarity=0.174  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG  121 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  121 (356)
                      ...++++|+|= |.+|..+|..+...+-  .+..+++++..+... ..|.   -.+      ..++++++.+|++|.+.|
T Consensus        21 laGk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdG---f~v------~~~~~a~~~aDi~vTaTG   87 (163)
T d1v8ba1          21 ISGKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEG---FNV------VTLDEIVDKGDFFITCTG   87 (163)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTT---CEE------CCHHHHTTTCSEEEECCS
T ss_pred             ecCCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcC---Ccc------CchhHccccCcEEEEcCC
Confidence            34569999999 9999999999987776  899999988433321 1222   122      246799999999999876


Q ss_pred             CC
Q 018433          122 VP  123 (356)
Q Consensus       122 ~~  123 (356)
                      .+
T Consensus        88 n~   89 (163)
T d1v8ba1          88 NV   89 (163)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=91.10  E-value=1.3  Score=37.29  Aligned_cols=118  Identities=16%  Similarity=0.103  Sum_probs=68.9

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhHHHHHhcCCCCCeEEEEeC-CCCh---hhh-
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLG-QPQL---ENA-  109 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-----~~g~~~dl~~~~~~~~v~~~~~-t~d~---~~a-  109 (356)
                      .|.+..-|.|+||+|-+|..++..|+..|. ..|+|+.++.     ......++...  ...+..+.. -+|.   .+. 
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~~~~~~   81 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELL   81 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHH
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHHHHHhh
Confidence            466777899999999999999999998885 3688887643     23333444432  234444321 1221   111 


Q ss_pred             --h---CCCcEEEEcCCCCCCCC---CcH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 018433          110 --L---TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS  161 (356)
Q Consensus       110 --l---~~aDiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t  161 (356)
                        +   -..|.||..+|......   ++.   ...+.-|+.....+.+.+... +.+.++++|
T Consensus        82 ~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          82 GGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             HTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence              1   24677888888653221   222   223456666666666655443 445566554

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=0.5  Score=38.39  Aligned_cols=72  Identities=13%  Similarity=0.227  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCC-CchHHHHHHHHHhCCCCcEEEEEeCCC--c-hh---HHHHHhcCCCCCeEEEEeCCCChhhhhCCCcE
Q 018433           43 AGFKVAILGAA-GGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG---VTADISHMDTGAVVRGFLGQPQLENALTGMDL  115 (356)
Q Consensus        43 ~~~KI~IIGa~-G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g---~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDi  115 (356)
                      +..||+++|=+ .+|..+++..+..-|.  +++++-...  . ..   .+.+.... .+..+..   +.|.+++++++|+
T Consensus         4 ~~l~i~~vGD~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~d~~~a~~~aDv   77 (183)
T d1duvg2           4 NEMTLVYAGDARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNITL---TEDVAKGVEGADF   77 (183)
T ss_dssp             GGCEEEEESCTTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEEEE---ESCHHHHHTTCSE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCceEE---EechhhccccCCE
Confidence            35799999951 2577777776666676  999998755  1 11   12222221 1244554   3678899999999


Q ss_pred             EEEcC
Q 018433          116 VIIPA  120 (356)
Q Consensus       116 VIi~a  120 (356)
                      |..+-
T Consensus        78 vyt~~   82 (183)
T d1duvg2          78 IYTDV   82 (183)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            88864

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.09  E-value=0.32  Score=38.52  Aligned_cols=71  Identities=13%  Similarity=0.068  Sum_probs=43.0

Q ss_pred             CCCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEc
Q 018433           43 AGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP  119 (356)
Q Consensus        43 ~~~KI~IIGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  119 (356)
                      +..||++||=..+  |..+++..+..-|.  +++++-..+....-.++.+. ....+..+   +|+++++++||+|..+
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~~~-~~~~~~~~---~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEILDE-LNYPVKEV---ENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHHTT-CCSCEEEE---SCGGGTGGGCSEEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhccc-CCCeEEEE---eCHHHHhhcCCeEEEe
Confidence            3579999998334  77888777776665  55555443311000111211 12455543   5788999999988776

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.08  E-value=1.8  Score=33.49  Aligned_cols=112  Identities=10%  Similarity=0.033  Sum_probs=64.6

Q ss_pred             eEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCC
Q 018433           46 KVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV  122 (356)
Q Consensus        46 KI~IIGa~---G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  122 (356)
                      .|+||||+   +..|..++..|...|+  +|+.+..+.  .   ++.      ....+   .++.+.-...|+|++... 
T Consensus        21 sIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~--~---~i~------G~~~~---~sl~dlp~~iD~v~i~vp-   83 (139)
T d2d59a1          21 KIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKY--E---EVL------GRKCY---PSVLDIPDKIEVVDLFVK-   83 (139)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC--S---EET------TEECB---SSGGGCSSCCSEEEECSC-
T ss_pred             eEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCcc--c---ccC------CCccc---ccccccCccceEEEEEeC-
Confidence            89999996   4788999999999888  888887643  0   011      11111   234332346899888742 


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEe-c-hhhHHHH
Q 018433          123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-T-MLDVVRA  197 (356)
Q Consensus       123 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~-t-~ld~~R~  197 (356)
                                     .+.+.++.+++.+.+++++++..+.-.+    -+.+.+++ .|+   +++|= | ..+..||
T Consensus        84 ---------------~~~~~~~~~e~~~~g~k~v~~~~G~~~e----e~~~~a~~-~gi---~vig~~C~~v~~~rl  137 (139)
T d2d59a1          84 ---------------PKLTMEYVEQAIKKGAKVVWFQYNTYNR----EASKKADE-AGL---IIVANRCMMREHERL  137 (139)
T ss_dssp             ---------------HHHHHHHHHHHHHHTCSEEEECTTCCCH----HHHHHHHH-TTC---EEEESCCHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHhCCCEEEEeccccCH----HHHHHHHH-CCC---EEEcCCcChhhhhhh
Confidence                           2335556666666676654443332222    22344444 343   78886 7 3454443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.90  E-value=0.088  Score=42.89  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=29.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      -|+|||| |..|.+.|..|+..|.  +|.++|.++
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            4899999 9999999999999998  899999976

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.83  E-value=0.087  Score=45.29  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      -|+|||| |-+|.++|+.|+.+|.  +++|+|...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999988  899999754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.81  E-value=0.11  Score=44.23  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=29.9

Q ss_pred             CeE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI-~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||| .|+||++-+|..+|..|+..|.  +|++.|+++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence            454 7779989999999999999998  999999876

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.59  E-value=0.25  Score=40.45  Aligned_cols=75  Identities=16%  Similarity=0.172  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHHHHhcCC---C--------CCeEEEEeCCCChhhhhC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD---T--------GAVVRGFLGQPQLENALT  111 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~-~g~~~dl~~~~---~--------~~~v~~~~~t~d~~~al~  111 (356)
                      +.||+|.|- |.+|..++..+.+++-+.-+.+-|..+. ....+-..+..   .        ...+.   ...++.+.+.
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---v~g~~~~~~~   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIP---VAGTVEDLIK   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCC---CCCCHHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceecccccee---cCCchhhhhh
Confidence            359999998 9999999999988765433444455442 11111111110   0        01111   1245677788


Q ss_pred             CCcEEEEcCCC
Q 018433          112 GMDLVIIPAGV  122 (356)
Q Consensus       112 ~aDiVIi~ag~  122 (356)
                      ++|+||.+.|.
T Consensus        77 ~vDiViecTG~   87 (178)
T d1b7go1          77 TSDIVVDTTPN   87 (178)
T ss_dssp             HCSEEEECCST
T ss_pred             cCCEEEECCCC
Confidence            99999998763

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.32  E-value=0.13  Score=39.83  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=21.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPL   69 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~   69 (356)
                      |||+|+|++|.+|+.++..+...+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            7999999999999999877776665

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.86  E-value=1.6  Score=36.60  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=28.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~---~~~~~el~L~D~~~   80 (356)
                      +.|.|+||++-+|..+|..|+.   .+.  .|++.++++
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~   39 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNR   39 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            4699999999999999988864   345  999999987

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.096  Score=46.15  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=32.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHH
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA   86 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~   86 (356)
                      .+|+|||| |..|.++|..|++.|.  +|.++|.+. .-|.+.
T Consensus         2 ~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~~iGG~~~   41 (298)
T d1i8ta1           2 YDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRNHIGGNAY   41 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSSSSSGGGC
T ss_pred             ccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCCCcccceE
Confidence            47999999 9999999999998887  899999877 444443

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=89.71  E-value=0.47  Score=40.07  Aligned_cols=71  Identities=13%  Similarity=0.208  Sum_probs=39.7

Q ss_pred             CCCCeEEEEcCCCch----HHHHHHHHHhCCCCcEEE-EEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhC--C
Q 018433           42 AAGFKVAILGAAGGI----GQPLAMLMKINPLVSVLH-LYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALT--G  112 (356)
Q Consensus        42 ~~~~KI~IIGa~G~v----G~~~a~~l~~~~~~~el~-L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~--~  112 (356)
                      .+++||+|||+ |..    +...++.+.......+|+ ++|++.  +...+..+   . ......+   .|+++.++  +
T Consensus        14 ~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~---~-~~~~~~~---~~~~~l~~~~~   85 (237)
T d2nvwa1          14 SRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL---Q-LKHATGF---DSLESFAQYKD   85 (237)
T ss_dssp             GCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT---T-CTTCEEE---SCHHHHHHCTT
T ss_pred             CCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhc---c-cccceee---cchhhcccccc
Confidence            46789999999 764    344445555433222666 889875  22222221   1 1223333   46767664  5


Q ss_pred             CcEEEEcC
Q 018433          113 MDLVIIPA  120 (356)
Q Consensus       113 aDiVIi~a  120 (356)
                      .|+|+++.
T Consensus        86 iD~V~i~t   93 (237)
T d2nvwa1          86 IDMIVVSV   93 (237)
T ss_dssp             CSEEEECS
T ss_pred             cceeeccC
Confidence            77788763

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.63  E-value=0.25  Score=41.92  Aligned_cols=44  Identities=23%  Similarity=0.270  Sum_probs=35.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS   89 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~   89 (356)
                      .+.+.|+||++-+|..++..|+..|.  .|++.|+++  ++....++.
T Consensus         5 GKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~   50 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG   50 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC
Confidence            34567999999999999999999998  899999987  444444443

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.13  Score=48.00  Aligned_cols=33  Identities=30%  Similarity=0.576  Sum_probs=30.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||.|||+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        39 kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          39 KVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             CEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             eEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            8999999 9999999999999886 4899999875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.23  E-value=1.6  Score=34.85  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=62.5

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCC-Chhh-----hhCC
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQP-QLEN-----ALTG  112 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~-d~~~-----al~~  112 (356)
                      +..+..+|+|+|+ |.+|...+..+...+. ..|+..|.++ ....+.++--    ..+-...... ..+.     .=.+
T Consensus        25 ~v~~G~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          25 KVTPGSTCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGA----TDCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCCEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCC----CcccCCccchhhhhhhHhhhhcCC
Confidence            3455679999998 9999999888877763 4889999987 4444444421    1111000011 1111     1268


Q ss_pred             CcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEecCCCCc
Q 018433          113 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLISNPVNS  166 (356)
Q Consensus       113 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-a~viv~tNPv~~  166 (356)
                      +|+||.+.|.+.                  -+-..++-..|. +.++++..|.+-
T Consensus        99 ~d~vie~~G~~~------------------~~~~a~~~~~~g~G~~v~vG~~~~~  135 (174)
T d1e3ia2          99 VDYSLDCAGTAQ------------------TLKAAVDCTVLGWGSCTVVGAKVDE  135 (174)
T ss_dssp             BSEEEESSCCHH------------------HHHHHHHTBCTTTCEEEECCCSSSE
T ss_pred             CcEEEEecccch------------------HHHHHHHHhhcCCeEEEecCCCCCc
Confidence            999999987541                  122233334574 888888877654

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.15  E-value=0.5  Score=39.22  Aligned_cols=104  Identities=23%  Similarity=0.310  Sum_probs=60.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCC----C-CeEEEE--------------eCCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDT----G-AVVRGF--------------LGQPQ  105 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~----~-~~v~~~--------------~~t~d  105 (356)
                      +|-|||- |..|..++..+...++ ..+++.+|.+.   ..+...+...    . ...++.              .....
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~---~~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~~~   78 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA---QALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDE   78 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH---HHHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTHHH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH---HHHhcCCcchhhccccccccCCCcCcChhhhHhhHHHHHHH
Confidence            6889999 8899999999988764 34888888864   2222222110    0 001110              00123


Q ss_pred             hhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       106 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      ..++++++|+||++||...   .+.    .-=+|++.++++...    --.+-++|-|-
T Consensus        79 I~~~l~~~d~vfi~AGlGG---gTG----tGaaPviA~iake~g----~l~v~ivt~PF  126 (198)
T d1rq2a1          79 IEELLRGADMVFVTAGEGG---GTG----TGGAPVVASIARKLG----ALTVGVVTRPF  126 (198)
T ss_dssp             HHHHHTTCSEEEEEEETTS---SHH----HHHHHHHHHHHHHHT----CEEEEEEEECC
T ss_pred             HHHHhcCCCEEEEEEecCC---CCC----cchHHHHHHHHHHcC----CcEEEEEecCh
Confidence            5678899999999998763   222    233666666666642    12234455564

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.07  E-value=0.23  Score=40.38  Aligned_cols=78  Identities=15%  Similarity=0.195  Sum_probs=45.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhc-CC----CCCeEE-----EEeCCCChhhhhCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MD----TGAVVR-----GFLGQPQLENALTGM  113 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~-~~----~~~~v~-----~~~~t~d~~~al~~a  113 (356)
                      ++||+|.|- |.+|..++..+..++-..-+.+-|..+......-+.. ..    ....+.     .+....++.+.+.++
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence            369999999 9999999988887765444445565442211110111 00    000000     011124566778899


Q ss_pred             cEEEEcCCC
Q 018433          114 DLVIIPAGV  122 (356)
Q Consensus       114 DiVIi~ag~  122 (356)
                      |+||-+.|.
T Consensus        81 DvViEcTG~   89 (172)
T d2czca2          81 DIIVDATPG   89 (172)
T ss_dssp             SEEEECCST
T ss_pred             CEEEECCCC
Confidence            999998764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.05  E-value=0.29  Score=39.29  Aligned_cols=96  Identities=18%  Similarity=0.211  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      ++..+|.|.||+|.+|...+..+...|.  +++..+.++ ....+.++   .. ..+-.+....+....-+++|+|+-+.
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~l---Ga-~~~i~~~~~~~~~~~~~g~D~v~d~~   99 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLAL---GA-EEAATYAEVPERAKAWGGLDLVLEVR   99 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHT---TC-SEEEEGGGHHHHHHHTTSEEEEEECS
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccc--cccccccccccccccccc---cc-ceeeehhhhhhhhhcccccccccccc
Confidence            4556899999889999998888888886  777777655 22222222   11 12211110001123447899999876


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       121 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      |..          +          -..++-..|.+.++.+.+|
T Consensus       100 G~~----------~----------~~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2         100 GKE----------V----------EESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             CTT----------H----------HHHHTTEEEEEEEEEC---
T ss_pred             chh----------H----------HHHHHHHhcCCcEEEEeCC
Confidence            511          1          1224444588998888654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=3  Score=35.80  Aligned_cols=115  Identities=14%  Similarity=0.170  Sum_probs=60.5

Q ss_pred             CeEEEE-cCCCchHHHHHHHHHhCCCCcEEEEEe---CCC-chhHHHHH-hcCC-CCCeEEEEeC-CCChhh---h----
Q 018433           45 FKVAIL-GAAGGIGQPLAMLMKINPLVSVLHLYD---VVN-TPGVTADI-SHMD-TGAVVRGFLG-QPQLEN---A----  109 (356)
Q Consensus        45 ~KI~II-Ga~G~vG~~~a~~l~~~~~~~el~L~D---~~~-~~g~~~dl-~~~~-~~~~v~~~~~-t~d~~~---a----  109 (356)
                      +||++| ||++-+|.++|..|+..|.  .+++++   .+. ......+. .... ....+..+.. -+|.++   +    
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            377755 9999999999999999875  434443   222 11111111 1111 1223333211 123211   1    


Q ss_pred             -hCCCcEEEEcCCCCCCCC---Cc---HHHHHHHHH----HHHHHHHHHHHHhCCCcEEEEecC
Q 018433          110 -LTGMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  162 (356)
Q Consensus       110 -l~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~viv~tN  162 (356)
                       -...|++|..+|......   .+   ....+..|+    ...+.+.+.+.+.. .+.||++|.
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS  142 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGS  142 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEec
Confidence             146899999888643221   11   233344554    45566666776654 567777654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=88.63  E-value=0.16  Score=42.54  Aligned_cols=32  Identities=25%  Similarity=0.217  Sum_probs=29.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      -|+|||| |..|...|..|++.|+  +++|+|.+.
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999998  999999876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.59  E-value=0.81  Score=36.10  Aligned_cols=76  Identities=17%  Similarity=0.093  Sum_probs=47.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhh------CCC
Q 018433           41 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TGM  113 (356)
Q Consensus        41 ~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------~~a  113 (356)
                      -.+.-+|.|+|++|.+|...+..+...+. .+++..|.++ ....+.++-     ..........|+.+.+      ++.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~G-----a~~~i~~~~~~~~~~~~~~~~~~~~   98 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAG-----ADYVINASMQDPLAEIRRITESKGV   98 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHT-----CSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcC-----CceeeccCCcCHHHHHHHHhhcccc
Confidence            34556899999779999888877776654 3899999876 223333331     1111111223443333      468


Q ss_pred             cEEEEcCCC
Q 018433          114 DLVIIPAGV  122 (356)
Q Consensus       114 DiVIi~ag~  122 (356)
                      |+||.+.|.
T Consensus        99 d~vid~~g~  107 (170)
T d1jvba2          99 DAVIDLNNS  107 (170)
T ss_dssp             EEEEESCCC
T ss_pred             hhhhccccc
Confidence            999998764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.16  E-value=0.26  Score=37.68  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .|.+++|||+ |.+|.-+|..+...|.  ++.+++..+
T Consensus        25 ~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            3579999999 9999999998888777  999998765

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=87.98  E-value=1.9  Score=36.54  Aligned_cols=31  Identities=19%  Similarity=0.200  Sum_probs=27.0

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           48 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        48 ~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .|+||++-+|..+|..|+..|.  +|++.|.+.
T Consensus         6 lITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           6 LVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            4569988999999999999998  899988765

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=87.84  E-value=0.43  Score=37.71  Aligned_cols=63  Identities=13%  Similarity=0.177  Sum_probs=42.8

Q ss_pred             CCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcC
Q 018433           44 GFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA  120 (356)
Q Consensus        44 ~~KI~IIGa--~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  120 (356)
                      .+||+++|=  .+.|+.+++..+..-|.  ++++......       ...  ...+..+   .|++++++++|+|..+-
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~-------~~~--~~~~~~~---~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW-------QDE--ENTFGTY---VSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh-------hcc--ccceeEE---EechhccccCceeeeeE
Confidence            579999997  45688888888876665  7777776431       100  1123332   46779999999988763

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.57  E-value=0.12  Score=39.87  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=27.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.+|+|+|| |+.|..++..+....-..-+.++|.++
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            348999999 999999987665444445778999876

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.42  E-value=0.2  Score=38.09  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .|.+++|||| |.+|.-+|..+...|.  ++.++...+
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            3579999999 9999999999988786  999998866

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.33  E-value=0.2  Score=43.30  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           47 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        47 I~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      |+|||| |..|.+.|..|+..|+  ++.++|...
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            799999 9999999999999998  899999755

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.22  E-value=1.2  Score=33.46  Aligned_cols=95  Identities=13%  Similarity=0.057  Sum_probs=56.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChh----hhhCCCcEEEEcCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLE----NALTGMDLVIIPAG  121 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~----~al~~aDiVIi~ag  121 (356)
                      +|.|+|. |.+|..++..|.  +.  +++++|.++....  .+..... .-+.+  ..+|.+    ..+.+|+.+|++..
T Consensus         2 HivI~G~-g~~g~~l~~~L~--~~--~i~vi~~d~~~~~--~~~~~~~-~~i~G--d~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELR--GS--EVFVLAEDENVRK--KVLRSGA-NFVHG--DPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSC--GG--GEEEEESCTTHHH--HHHHTTC-EEEES--CTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EEEEECC-CHHHHHHHHHHc--CC--CCEEEEcchHHHH--HHHhcCc-ccccc--ccCCHHHHHHhhhhcCcEEEEecc
Confidence            6899999 999999998874  33  5788898773222  2222211 11221  122321    23588999999743


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec-CCCC
Q 018433          122 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVN  165 (356)
Q Consensus       122 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~t-NPv~  165 (356)
                      ..           ..|+.    ++..+++.+|+..++.-+ +|-+
T Consensus        72 ~d-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          72 SD-----------SETIH----CILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             SH-----------HHHHH----HHHHHHHHCSSSCEEEECSSGGG
T ss_pred             ch-----------hhhHH----HHHHHHHHCCCceEEEEEcCHHH
Confidence            11           34443    345577889997666665 5553

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=87.09  E-value=0.15  Score=41.40  Aligned_cols=34  Identities=26%  Similarity=0.230  Sum_probs=29.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ..+|+|||+ |..|...|..++..+.  +++++|...
T Consensus         5 ~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGS-GPAGYTAAVYAARANL--QPVLITGME   38 (190)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEeec
Confidence            458999999 9999999999998887  888888643

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.69  E-value=0.26  Score=43.46  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ..|+|||| |..|.+.|..|.+.++  +++++|..+
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            58999999 9999999999999888  899999876

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.51  E-value=0.28  Score=38.46  Aligned_cols=31  Identities=29%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ||+|||| |.+|..+|..|.. +.  ++.+++...
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS--EEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC--CEEEEeccc
Confidence            8999999 9999999988854 33  899998654

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.47  E-value=0.31  Score=40.55  Aligned_cols=89  Identities=18%  Similarity=0.252  Sum_probs=54.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHHHHhcCCCCCeEEE-------E--------------eCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRG-------F--------------LGQ  103 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~-~~el~L~D~~~~~g~~~dl~~~~~~~~v~~-------~--------------~~t  103 (356)
                      +|.|||- |..|..++..+...++ ..+++.+|.+.     .+|.......++..       .              ...
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDA-----QALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBT-----GGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcH-----HHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            6889999 9999999999888764 34889999875     11221111001100       0              001


Q ss_pred             CChhhhhCCCcEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 018433          104 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG  147 (356)
Q Consensus       104 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~  147 (356)
                      ....+.++++|+||++||...   -+.    .--+|++.++++.
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGG---GTG----tgaapviA~~ake  113 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGG---GTG----TGAAPIIAEVAKE  113 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTS---SHH----HHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEEEecCCC---Ccc----ccHHHHHHHHHHH
Confidence            234567899999999998753   222    2335555555544

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=86.44  E-value=0.46  Score=37.54  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=29.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   79 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~   79 (356)
                      ..+|+|||| |.+|.-+|..|...+.-..|++++..
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence            458999999 99999999999988765567777654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=86.36  E-value=0.96  Score=35.84  Aligned_cols=72  Identities=17%  Similarity=0.076  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhh------CCCcE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TGMDL  115 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------~~aDi  115 (356)
                      +..+|.|+||+|.+|...+..+...|.  +++..|.++ ....+.++   .. ..+-.. ...|+.+.+      ++.|+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~l---Ga-~~vi~~-~~~d~~~~v~~~t~g~g~d~  100 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA---GA-WQVINY-REEDLVERLKEITGGKKVRV  100 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH---TC-SEEEET-TTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhc---CC-eEEEEC-CCCCHHHHHHHHhCCCCeEE
Confidence            345899999978899998888877776  889998876 22233333   11 122111 235665544      46788


Q ss_pred             EEEcCC
Q 018433          116 VIIPAG  121 (356)
Q Consensus       116 VIi~ag  121 (356)
                      |+-+.|
T Consensus       101 v~d~~g  106 (179)
T d1qora2         101 VYDSVG  106 (179)
T ss_dssp             EEECSC
T ss_pred             EEeCcc
Confidence            888765

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.07  E-value=0.31  Score=40.64  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .+.|+||++-+|..+|..|+..|.  +|++.|+++
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            678889999999999999999998  999999876

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.05  E-value=0.85  Score=36.27  Aligned_cols=73  Identities=19%  Similarity=0.254  Sum_probs=45.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhh------CCCcEE
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL------TGMDLV  116 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------~~aDiV  116 (356)
                      +..+|.|+||+|.+|...+..+...+.  +++..+.++.  ....+...  +....+.....|+.+.+      +++|+|
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~--~~~~l~~~--Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v   98 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDA--KREMLSRL--GVEYVGDSRSVDFADEILELTDGYGVDVV   98 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHH--HHHHHHTT--CCSEEEETTCSTHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEEECCCCCcccccchhhccccc--cceeeecccc--cccccccc--cccccccCCccCHHHHHHHHhCCCCEEEE
Confidence            345899999989999998887777776  6676665431  11112222  22222211234565655      579999


Q ss_pred             EEcCC
Q 018433          117 IIPAG  121 (356)
Q Consensus       117 Ii~ag  121 (356)
                      +-+.|
T Consensus        99 ~d~~g  103 (183)
T d1pqwa_          99 LNSLA  103 (183)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            99875

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.02  E-value=1.3  Score=34.99  Aligned_cols=97  Identities=14%  Similarity=0.145  Sum_probs=56.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChhhhh------CCCc
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TGMD  114 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~~al------~~aD  114 (356)
                      .+..+|.|+||+|.||......+...|.  +++..+.++ ....+.+   ... ..+-.. .+.|+.+.+      ++.|
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~--~vi~~~~~~~~~~~~~~---~Ga-~~vi~~-~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGL--KILGTAGTEEGQKIVLQ---NGA-HEVFNH-REVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH---TTC-SEEEET-TSTTHHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEeccccccccccccccccCc--ccccccccccccccccc---cCc-cccccc-ccccHHHHhhhhhccCCce
Confidence            4456899999889999988888777786  777777554 2222222   221 122111 234554443      4589


Q ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 018433          115 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  164 (356)
Q Consensus       115 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv  164 (356)
                      +|+-+.|-                +.+...   ++-..|.+.++.+.++.
T Consensus       100 ~v~d~~g~----------------~~~~~~---~~~l~~~G~iv~~G~~~  130 (174)
T d1yb5a2         100 IIIEMLAN----------------VNLSKD---LSLLSHGGRVIVVGSRG  130 (174)
T ss_dssp             EEEESCHH----------------HHHHHH---HHHEEEEEEEEECCCCS
T ss_pred             EEeecccH----------------HHHHHH---HhccCCCCEEEEEecCC
Confidence            88887531                112222   22244789988886443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.89  E-value=0.66  Score=36.76  Aligned_cols=101  Identities=18%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHHHHhcCCCCCeEEEEeCCCChh-hhhCCCcEEE
Q 018433           40 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE-NALTGMDLVI  117 (356)
Q Consensus        40 ~~~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~t~d~~-~al~~aDiVI  117 (356)
                      +..+..+|.|+|+ |.+|...+..+...|.  +++.+|.++ ....+.++-   ...-+. .....+.. ......|+|+
T Consensus        24 ~~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lG---a~~~i~-~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          24 GCGPGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMG---ADHYIA-TLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TCSTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHT---CSEEEE-GGGTSCHHHHSCSCEEEEE
T ss_pred             CcCCCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccC---CcEEee-ccchHHHHHhhhcccceEE
Confidence            4456679999998 9999998887777776  888999987 344444442   111121 11112222 2346789999


Q ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCC
Q 018433          118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  163 (356)
Q Consensus       118 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNP  163 (356)
                      .+.+.+.....+                ..++-..|.+.+++++-|
T Consensus        97 ~~~~~~~~~~~~----------------~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2          97 VCASSLTDIDFN----------------IMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             ECCSCSTTCCTT----------------TGGGGEEEEEEEEECCCC
T ss_pred             EEecCCccchHH----------------HHHHHhhccceEEEeccc
Confidence            886643221110                123334488888888643

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=85.87  E-value=0.29  Score=39.10  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=24.4

Q ss_pred             CCCeEEEEcCCCchHHHHH-HHHHhCCCCcEEEEE-eCCC
Q 018433           43 AGFKVAILGAAGGIGQPLA-MLMKINPLVSVLHLY-DVVN   80 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a-~~l~~~~~~~el~L~-D~~~   80 (356)
                      +++||+|||+ |.+|..+. ..|...+.. ||+++ |++.
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~~   40 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGIDA   40 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSCT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecch
Confidence            4579999997 99998754 444444444 66655 7664

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=85.83  E-value=0.27  Score=41.60  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ..|.|||| |..|...|..|++.+.  ++.|+|.+.
T Consensus         5 ~DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            36999999 9999999999999997  899999876

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=85.49  E-value=0.29  Score=42.77  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=27.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHh-----CCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKI-----NPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~-----~~~~~el~L~D~~~   80 (356)
                      -|+|||| |.+|.++|..|++     .|+  +++++|..+
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            5899999 9999999999974     467  899999864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.10  E-value=0.47  Score=35.34  Aligned_cols=36  Identities=14%  Similarity=0.067  Sum_probs=28.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~-~~~~~el~L~D~~~   80 (356)
                      |.||+|||| |.+|.-+|..+.. .....++.+++..+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            469999999 9999999976653 33445999999865

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.75  E-value=0.29  Score=39.69  Aligned_cols=34  Identities=18%  Similarity=0.236  Sum_probs=29.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      +.+|+|||| |..|...|..++..++  +++++|...
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCSS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEeec
Confidence            358999999 9999999999998887  778888543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=84.45  E-value=0.41  Score=39.20  Aligned_cols=32  Identities=13%  Similarity=0.065  Sum_probs=29.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      -|+|||| |..|.+.|..++..|.  ++.|+|.+.
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            5899999 9999999999999888  899999765

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.39  E-value=0.4  Score=39.41  Aligned_cols=32  Identities=19%  Similarity=0.145  Sum_probs=29.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      -|+|||| |..|.+.|..++..+.  +++|+|..+
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            5899999 9999999999999888  999999765

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=84.30  E-value=1  Score=35.26  Aligned_cols=70  Identities=20%  Similarity=0.323  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEE
Q 018433           43 AGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI  117 (356)
Q Consensus        43 ~~~KI~IIGa~--G~vG~~~a~~l~~~~~~~el~L~D~~~--~-~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVI  117 (356)
                      +..||++||=.  +.|..+++..+..-|.  +++++-...  . ......+...  ...+..   +.|++++++++|+|.
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~--~~~~~~---~~d~~~av~~aDvvy   75 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV--ELYLISPELLRMPRHIVEELREK--GMKVVE---TTTLEDVIGKLDVLY   75 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE--EEEEECCGGGCCCHHHHHHHHHT--TCCEEE---ESCTHHHHTTCSEEE
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCC--cEEEEccchhhcchHHHHHHHhh--ccccee---ecCHHHhhccCcEEE
Confidence            35699999983  4677777777766665  888887654  2 2222222222  234443   367889999999887


Q ss_pred             Ec
Q 018433          118 IP  119 (356)
Q Consensus       118 i~  119 (356)
                      .+
T Consensus        76 ~~   77 (157)
T d1ml4a2          76 VT   77 (157)
T ss_dssp             EC
T ss_pred             ee
Confidence            76

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=84.24  E-value=0.38  Score=41.33  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=28.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~-~~~~el~L~D~~~   80 (356)
                      -|+|||| |..|...|..|+.. |+  +++++|..+
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            5999999 99999999999874 77  999999865

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=0.67  Score=35.57  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=27.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~--~~~~el~L~D~~~   80 (356)
                      .+|+|||| |++|.-+|..|...  ....++.+++...
T Consensus        38 k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          38 KSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            39999999 99999988877542  2233999999865

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=84.07  E-value=0.94  Score=38.84  Aligned_cols=114  Identities=23%  Similarity=0.229  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEEcCCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP  123 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  123 (356)
                      ..||++||- -    .....+...+.  ++..+|.++..+   |         ..    ..+.++.+..||+||+|+.  
T Consensus       122 g~kV~vIG~-~----P~v~~l~~~~~--~~~VlE~~p~~g---d---------~p----~~~~~~lLp~aD~viiTGs--  176 (251)
T d2h1qa1         122 GKKVGVVGH-F----PHLESLLEPIC--DLSILEWSPEEG---D---------YP----LPASEFILPECDYVYITCA--  176 (251)
T ss_dssp             TSEEEEESC-C----TTHHHHHTTTS--EEEEEESSCCTT---C---------EE----GGGHHHHGGGCSEEEEETH--
T ss_pred             CCEEEEEec-c----hhHHHHHhcCC--cEEEEeCCCCCC---C---------CC----chHHHHhhhcCCEEEEEec--
Confidence            359999987 2    34445555554  899999875211   1         11    1334678999999999962  


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCCEEEechhhHHHHHHHHHH
Q 018433          124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE  203 (356)
Q Consensus       124 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~~~~~~~~~~~~~kviG~t~ld~~R~~~~la~  203 (356)
                                     -++-.-.+.|-+.++++..+++.=|...+.+.   + .+ .|.  +.+=|+-..|..++.+.+++
T Consensus       177 ---------------TlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~---l-f~-~Gv--~~lag~~v~d~~~~~~~i~~  234 (251)
T d2h1qa1         177 ---------------SVVDKTLPRLLELSRNARRITLVGPGTPLAPV---L-FE-HGL--QELSGFMVKDNARAFRIVAG  234 (251)
T ss_dssp             ---------------HHHHTCHHHHHHHTTTSSEEEEESTTCCCCGG---G-GG-TTC--SEEEEEEESCHHHHHHHHTT
T ss_pred             ---------------hhhcCCHHHHHHhCCcCCEEEEECCCcccCHH---H-Hh-cCC--ceEeEEEEeCHHHHHHHHHc
Confidence                           12334445555678777545555555555542   1 23 242  34445567888888887764


Q ss_pred             H
Q 018433          204 V  204 (356)
Q Consensus       204 ~  204 (356)
                      -
T Consensus       235 G  235 (251)
T d2h1qa1         235 A  235 (251)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.36  E-value=0.63  Score=34.69  Aligned_cols=36  Identities=17%  Similarity=0.069  Sum_probs=27.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCC
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN   80 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~-~~~el~L~D~~~   80 (356)
                      |.+|+|||| |.+|.-+|..+...+ ...++.|++..+
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            469999999 999999997665432 234899999765

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.90  E-value=0.44  Score=43.32  Aligned_cols=32  Identities=31%  Similarity=0.389  Sum_probs=28.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHh------CCCCcEEEEEeCCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKI------NPLVSVLHLYDVVN   80 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~------~~~~~el~L~D~~~   80 (356)
                      -|+|||| |..|++.|..|++      .|+  +|+|+|...
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            6999999 9999999999986      677  999999865

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.96  E-value=1.5  Score=34.78  Aligned_cols=70  Identities=14%  Similarity=0.159  Sum_probs=41.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh----CCCCcEEEEEeCCC--c-hhHHHHHhcC--CCCCeEEEEeCCCChhhhhCCC
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN--T-PGVTADISHM--DTGAVVRGFLGQPQLENALTGM  113 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~----~~~~~el~L~D~~~--~-~g~~~dl~~~--~~~~~v~~~~~t~d~~~al~~a  113 (356)
                      +..||+++|- +   +.++..++.    -|.  +++++-...  . .....+..+.  ..+..+..   +.|+.+++++|
T Consensus         3 ~gl~I~~vGD-~---~nV~~Sli~~~~~~g~--~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~---~~d~~~~~~~a   73 (170)
T d1otha2           3 KGLTLSWIGD-G---NNILHSIMMSAAKFGM--HLQAATPKGYEPDASVTKLAEQYAKENGTKLLL---TNDPLEAAHGG   73 (170)
T ss_dssp             TTCEEEEESC-S---SHHHHHHHTTTGGGTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE---ESCHHHHHTTC
T ss_pred             CCCEEEEEcC-c---hhHHHHHHHHHHHcCC--EEEEEeccccCCchHHHHHHHHHHhccCCEEEE---EcCHHHHHhhh
Confidence            4679999998 5   345554443    344  888887654  1 1111111111  01244554   36889999999


Q ss_pred             cEEEEcCC
Q 018433          114 DLVIIPAG  121 (356)
Q Consensus       114 DiVIi~ag  121 (356)
                      |+|....-
T Consensus        74 dvi~~~~~   81 (170)
T d1otha2          74 NVLITDTW   81 (170)
T ss_dssp             SEEEECCS
T ss_pred             hheeeece
Confidence            99998753

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=81.80  E-value=1.8  Score=33.92  Aligned_cols=73  Identities=12%  Similarity=0.137  Sum_probs=44.6

Q ss_pred             CCCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC--chhHHHHHhcCCCCCeEEEEeCCCChhhhhCCCcEEEE
Q 018433           43 AGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII  118 (356)
Q Consensus        43 ~~~KI~IIGa~G~--vG~~~a~~l~~~~~~~el~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  118 (356)
                      ...||+++|=..+  |..+++..+..-+. ..+++.-...  ......+..+.. ...+..   +.|+++++++||+|..
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~-~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~---~~d~~~a~~~aDvvy~   77 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK-GIAWSL---HSSIEEVMAEVDILYM   77 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHHT-TCCEEE---CSCSTTTGGGCSEEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHHHHcCC-CeEEeeccchhhhhHHHHHHHhhh-cccccc---ccCHHHHhCcCceEEe
Confidence            3569999997333  77777666654432 2667776544  222333333322 234554   3688899999999886


Q ss_pred             cC
Q 018433          119 PA  120 (356)
Q Consensus       119 ~a  120 (356)
                      +.
T Consensus        78 ~~   79 (160)
T d1ekxa2          78 TR   79 (160)
T ss_dssp             CC
T ss_pred             ec
Confidence            63

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.59  E-value=0.47  Score=38.73  Aligned_cols=33  Identities=18%  Similarity=0.086  Sum_probs=29.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .-|+|||| |..|.+.|..++..+.  +++++|...
T Consensus         4 yDvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           4 NDVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            35899999 9999999999998887  899999765

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=81.52  E-value=2.1  Score=34.28  Aligned_cols=74  Identities=18%  Similarity=0.074  Sum_probs=43.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCchhHHHHHh-cCC----CC--------CeEEEEeCCCChhhh
Q 018433           44 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADIS-HMD----TG--------AVVRGFLGQPQLENA  109 (356)
Q Consensus        44 ~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L-~D~~~~~g~~~dl~-~~~----~~--------~~v~~~~~t~d~~~a  109 (356)
                      +.||+|-|- |.+|..++..+...+.. +++. -|..+......-+. +..    ..        ..+.   ...++.++
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---v~g~~~~~   75 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIE---VAGTVDDM   75 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCC---CCEEHHHH
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcc---cCCChhHh
Confidence            358999999 99999999888777644 5554 44443221111111 110    00        0011   12345677


Q ss_pred             hCCCcEEEEcCCC
Q 018433          110 LTGMDLVIIPAGV  122 (356)
Q Consensus       110 l~~aDiVIi~ag~  122 (356)
                      +.++|+||.+.|.
T Consensus        76 ~~~vDvViEcTG~   88 (171)
T d1cf2o1          76 LDEADIVIDCTPE   88 (171)
T ss_dssp             HHTCSEEEECCST
T ss_pred             hcCCCEEEEccCC
Confidence            8999999998764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.50  E-value=0.59  Score=36.91  Aligned_cols=31  Identities=23%  Similarity=0.259  Sum_probs=27.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   79 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~   79 (356)
                      -|+|||| |..|...|..+...+.  +++++|.+
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGER   33 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEEe
Confidence            4899999 9999999999998888  78888853

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=81.36  E-value=0.57  Score=37.28  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=26.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   78 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~   78 (356)
                      ||+|||+ |.+|..+|..|...+.-.+|+++..
T Consensus         5 ~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           5 PVVVLGA-GLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence            7999999 9999999999987775446776654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.82  E-value=0.6  Score=40.29  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      .-|+|||+ |..|.+.|..|++.|.  +|+|+|...
T Consensus        17 ~DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          17 VDVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            36999999 9999999999999997  899999865

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.73  E-value=4.4  Score=30.57  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=28.4

Q ss_pred             CCCCeEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           42 AAGFKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        42 ~~~~KI~IIGa~---G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      -.|..|+||||+   +..|..+...|...+ ..+|+.+....
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~   46 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKE   46 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSC
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCc
Confidence            356799999997   678888887776544 45888887653

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.64  E-value=0.97  Score=34.96  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=24.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 018433           46 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   79 (356)
Q Consensus        46 KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~   79 (356)
                      ||+|+|++|.+|+.++..+...+-..=+.-+|..
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            8999998899999998887765433222344543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=80.45  E-value=1.1  Score=37.03  Aligned_cols=36  Identities=28%  Similarity=0.345  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           42 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        42 ~~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      -+..+|+|-|. |+||+.++..|...|.  .|+..|++.
T Consensus        25 L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          25 LDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            45679999999 9999999999999886  899999975

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.07  E-value=0.75  Score=37.93  Aligned_cols=35  Identities=9%  Similarity=0.053  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 018433           45 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   80 (356)
Q Consensus        45 ~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~   80 (356)
                      ..+.|||| |+.|..+|..|...+...+|++++.+.
T Consensus         5 ~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           5 VPFLLIGG-GTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            36899999 999999999998877777999998643

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.03  E-value=0.82  Score=38.60  Aligned_cols=163  Identities=15%  Similarity=0.095  Sum_probs=84.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHHHHhcCCCCCeEEEEeC-CCCh---h-------hhh-
Q 018433           43 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---E-------NAL-  110 (356)
Q Consensus        43 ~~~KI~IIGa~G~vG~~~a~~l~~~~~~~el~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-t~d~---~-------~al-  110 (356)
                      +++.|.|+||++-+|..++..|+..|....|++.+++....  .++.... ...+..+.. -+|.   +       +.+ 
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~--~~l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   78 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA--TELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC--HHHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH--HHHHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence            34679999999999999999999988544788888775221  1233322 122332211 1221   1       111 


Q ss_pred             -CCCcEEEEcCCCCCCC----CCc---HHHHHHHHH----HHHHHHHHHHHHhC----------CCcEEEEecCCCCccH
Q 018433          111 -TGMDLVIIPAGVPRKP----GMT---RDDLFNINA----GIVRTLCEGIAKCC----------PNATVNLISNPVNSTV  168 (356)
Q Consensus       111 -~~aDiVIi~ag~~~~~----g~~---r~~~~~~N~----~i~~~i~~~i~~~~----------p~a~viv~tNPv~~~t  168 (356)
                       .+-|++|..||.....    ..+   ....+..|+    ...+.+.+.+++..          ..+.+++++.......
T Consensus        79 ~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~  158 (250)
T d1yo6a1          79 SDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT  158 (250)
T ss_dssp             GGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred             CCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccccccc
Confidence             2389999999863221    122   223444454    44455556665432          2356666654443321


Q ss_pred             HHHHHHHHHhCCCCC--CCEEEechhhHHHHHHHHHHHhCCCCCCCcccEE
Q 018433          169 PIAAEVFKKAGTYDP--KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  217 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~--~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~vi  217 (356)
                      .       ...+.+.  .-.++.+...-..|-+.+|..+  .+..|++..+
T Consensus       159 ~-------~~~~~~~~~~~aY~aSKaal~~l~~~la~el--~~~gI~v~~i  200 (250)
T d1yo6a1         159 D-------NTSGSAQFPVLAYRMSKAAINMFGRTLAVDL--KDDNVLVVNF  200 (250)
T ss_dssp             T-------CCSTTSSSCBHHHHHHHHHHHHHHHHHHHHT--GGGTCEEEEE
T ss_pred             C-------CcccccchhHHHHHHHHHHHHHHHHHHHHHh--cccCeEEEEE
Confidence            1       0011111  1113333333345667777776  3455655544