Citrus Sinensis ID: 018588

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
MILQLVIIIHRDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIRI
cccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccEEcccccc
cEEEEEEEEEEEEccccccHHHHHHHHHcHHHHHHHcHHHcccHHHcccHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccEEEEEccEEEc
MILQLVIIIHRDvvthsmapEKVEIFRSLETWAEQNVLIhlkpvdkswqptdflpesetseGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLdgvrdetgaSLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRsgmdpkfennpyngfvytSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKrfrmpghfmydgqddkiFDHFSAVTQrlgvytghDYADILEFLIERWKVEKLIGltsegrkaqdfvcglPLRIRRILENKALVDtakkggsavpfgwvfgqeiri
MILQLVIIihrdvvthsmaPEKVEIFRSLETWAEQNVLIHlkpvdkswqptDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICgtiasdekrhETAYTKIVeklfeidpdDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIgltsegrkaqdfvcGLPLRIRRILENKALvdtakkggsavpfgwvfgqeiri
MILQLVIIIHRDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIRI
*ILQLVIIIHRDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFL*******GFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQ****
*******************PEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRR*******************FGWVFGQEIRI
MILQLVIIIHRDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIRI
MILQLVIIIHRDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIRI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MILQLVIIIHRDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query353 2.2.26 [Sep-21-2011]
Q9M879396 Acyl-[acyl-carrier-protei yes no 0.951 0.848 0.761 1e-155
Q43593390 Acyl-[acyl-carrier-protei N/A no 0.951 0.861 0.75 1e-153
P22337396 Acyl-[acyl-carrier-protei N/A no 0.951 0.848 0.732 1e-152
P32061396 Acyl-[acyl-carrier-protei N/A no 0.951 0.848 0.726 1e-150
P22243396 Acyl-[acyl-carrier-protei N/A no 0.951 0.848 0.732 1e-150
O24428393 Acyl-[acyl-carrier-protei N/A no 0.951 0.854 0.732 1e-150
Q01753398 Acyl-[acyl-carrier-protei N/A no 0.949 0.841 0.725 1e-150
Q41319393 Acyl-[acyl-carrier-protei N/A no 0.951 0.854 0.729 1e-150
Q42807411 Acyl-[acyl-carrier-protei yes no 0.943 0.810 0.738 1e-150
P46253393 Acyl-[acyl-carrier-protei N/A no 0.951 0.854 0.720 1e-149
>sp|Q9M879|STAD5_ARATH Acyl-[acyl-carrier-protein] desaturase 5, chloroplastic OS=Arabidopsis thaliana GN=S-ACP-DES5 PE=1 SV=1 Back     alignment and function desciption
 Score =  549 bits (1415), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/339 (76%), Positives = 288/339 (84%), Gaps = 3/339 (0%)

Query: 14  VTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRER 73
           V HSM P+K+EIF+SLE WA++ +L +LKPV+KSWQPTDFLPE E SEGFY+QVKELRER
Sbjct: 60  VKHSMPPQKLEIFKSLEGWADETLLTYLKPVEKSWQPTDFLPEPE-SEGFYDQVKELRER 118

Query: 74  CKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRH 133
           CK+LP ++FV LVG+MITEEALPTYQTMLNTLDGVRDETGAS T WA W RAWTAEENRH
Sbjct: 119 CKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRH 178

Query: 134 GDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNT 193
           GDLLNKYLYLSGRVDM+QIEK+IQYLI SGMDPK ENNPY GF+YTSFQERATFISHGNT
Sbjct: 179 GDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNT 238

Query: 194 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMP 253
           ARL K  GD+KLAQICGTIA+DE+RHETAYTKIVEKLFEIDPD TIL LA MMKK+  MP
Sbjct: 239 ARLAKDRGDLKLAQICGTIAADERRHETAYTKIVEKLFEIDPDGTILGLADMMKKKISMP 298

Query: 254 GHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDF 313
            H MYDGQDD +F+HFS V QRLGVYT  DYADILEFL+ERW VE L  L+SEG +AQDF
Sbjct: 299 AHLMYDGQDDNLFEHFSTVAQRLGVYTAKDYADILEFLVERWNVETLTDLSSEGHRAQDF 358

Query: 314 VCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIR 352
           VCGLP RIR+I E       AK+    +PF W+FG+ IR
Sbjct: 359 VCGLPARIRKIEERAQ--GRAKEAAKNIPFSWIFGRNIR 395
Converts stearoyl-ACP to oleoyl-ACP by introduction of a cis double bond between carbons Delta(9) and Delta(10) of the acyl chain.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 9EC: .EC: 2
>sp|Q43593|STAD_OLEEU Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1 Back     alignment and function description
>sp|P22337|STAD_RICCO Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|P32061|STAD_CUCSA Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1 Back     alignment and function description
>sp|P22243|STAD_CARTI Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1 Back     alignment and function description
>sp|O24428|STAD_ELAGV Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2 Back     alignment and function description
>sp|Q01753|STAD_SIMCH Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1 Back     alignment and function description
>sp|Q41319|STAD_SOLCO Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2 Back     alignment and function description
>sp|Q42807|STAD_SOYBN Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1 Back     alignment and function description
>sp|P46253|STAD_SOLTU Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
TAIR|locus:2076969396 AT3G02630 [Arabidopsis thalian 0.951 0.848 0.764 3.4e-141
TAIR|locus:2181437394 AT5G16240 [Arabidopsis thalian 0.951 0.852 0.719 1.6e-134
TAIR|locus:2043899401 SSI2 "AT2G43710" [Arabidopsis 0.963 0.847 0.707 2e-134
TAIR|locus:2181427401 AT5G16230 [Arabidopsis thalian 0.960 0.845 0.674 2.8e-128
TAIR|locus:2029142391 FTM1 "FLORAL TRANSITION AT THE 0.968 0.874 0.632 3.4e-116
UNIPROTKB|E3PZS2376 SAD2 "Acyl-[acyl-carrier-prote 0.915 0.859 0.508 6.3e-92
UNIPROTKB|Q50824338 desA1 "Putative acyl-[acyl-car 0.770 0.804 0.285 5.3e-24
UNIPROTKB|O53442275 desA2 "Putative acyl-[acyl-car 0.339 0.436 0.293 2e-07
TAIR|locus:2076969 AT3G02630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
 Identities = 259/339 (76%), Positives = 290/339 (85%)

Query:    14 VTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRER 73
             V HSM P+K+EIF+SLE WA++ +L +LKPV+KSWQPTDFLPE E SEGFY+QVKELRER
Sbjct:    60 VKHSMPPQKLEIFKSLEGWADETLLTYLKPVEKSWQPTDFLPEPE-SEGFYDQVKELRER 118

Query:    74 CKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRH 133
             CK+LP ++FV LVG+MITEEALPTYQTMLNTLDGVRDETGAS T WA W RAWTAEENRH
Sbjct:   119 CKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRH 178

Query:   134 GDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNT 193
             GDLLNKYLYLSGRVDM+QIEK+IQYLI SGMDPK ENNPY GF+YTSFQERATFISHGNT
Sbjct:   179 GDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNT 238

Query:   194 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMP 253
             ARL K  GD+KLAQICGTIA+DE+RHETAYTKIVEKLFEIDPD TIL LA MMKK+  MP
Sbjct:   239 ARLAKDRGDLKLAQICGTIAADERRHETAYTKIVEKLFEIDPDGTILGLADMMKKKISMP 298

Query:   254 GHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDF 313
              H MYDGQDD +F+HFS V QRLGVYT  DYADILEFL+ERW VE L  L+SEG +AQDF
Sbjct:   299 AHLMYDGQDDNLFEHFSTVAQRLGVYTAKDYADILEFLVERWNVETLTDLSSEGHRAQDF 358

Query:   314 VCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIR 352
             VCGLP RIR+I E +A    AK+    +PF W+FG+ IR
Sbjct:   359 VCGLPARIRKI-EERAQ-GRAKEAAKNIPFSWIFGRNIR 395
GO:0006631 "fatty acid metabolic process" evidence=IEA
GO:0006633 "fatty acid biosynthetic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0045300 "acyl-[acyl-carrier-protein
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0007020 "microtubule nucleation" evidence=RCA
TAIR|locus:2181437 AT5G16240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043899 SSI2 "AT2G43710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181427 AT5G16230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029142 FTM1 "FLORAL TRANSITION AT THE MERISTEM1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E3PZS2 SAD2 "Acyl-[acyl-carrier-protein] desaturase 2, chloroplastic" [Ophrys sphegodes (taxid:145953)] Back     alignment and assigned GO terms
UNIPROTKB|Q50824 desA1 "Putative acyl-[acyl-carrier-protein] desaturase desA1" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|O53442 desA2 "Putative acyl-[acyl-carrier-protein] desaturase desA2" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2YS76STAD7_ORYSI1, ., 1, 4, ., 1, 9, ., 20.52470.95460.8341N/Ano
P29108STAD_BRANA1, ., 1, 4, ., 1, 9, ., 20.70880.95180.8442N/Ano
Q96456STAD_HELAN1, ., 1, 4, ., 1, 9, ., 20.68400.96310.8585N/Ano
Q01771STADS_BRANA1, ., 1, 4, ., 1, 9, ., 20.70290.95180.8421N/Ano
P22337STAD_RICCO1, ., 1, 4, ., 1, 9, ., 20.73230.95180.8484N/Ano
Q01753STAD_SIMCH1, ., 1, 4, ., 1, 9, ., 20.72560.94900.8417N/Ano
P46253STAD_SOLTU1, ., 1, 4, ., 1, 9, ., 20.72050.95180.8549N/Ano
A2WYF4STAD2_ORYSI1, ., 1, 4, ., 1, 9, ., 20.71760.95180.8484N/Ano
E3PZS3STAD2_OPHAA1, ., 1, 4, ., 1, 9, ., 20.50880.92060.8643N/Ano
Q42770STAD_GOSHI1, ., 1, 4, ., 1, 9, ., 20.70290.95460.8488N/Ano
Q8S059STAD2_ORYSJ1, ., 1, 4, ., 1, 9, ., 20.71760.95180.8484yesno
E3PZR9STAD3_OPHSP1, ., 1, 4, ., 1, 9, ., 20.71170.95460.8467N/Ano
O22832STAD7_ARATH1, ., 1, 4, ., 1, 9, ., 20.70580.95180.8379nono
Q42807STAD_SOYBN1, ., 1, 4, ., 1, 9, ., 20.73880.94330.8102yesno
B8AIC3STAD3_ORYSI1, ., 1, 4, ., 1, 9, ., 20.60230.96030.8432N/Ano
Q41319STAD_SOLCO1, ., 1, 4, ., 1, 9, ., 20.72940.95180.8549N/Ano
A2XSL4STAD5_ORYSI1, ., 1, 4, ., 1, 9, ., 20.70290.95180.8593N/Ano
P28645STAD_SPIOL1, ., 1, 4, ., 1, 9, ., 20.70580.95180.8421N/Ano
Q40731STAD5_ORYSJ1, ., 1, 4, ., 1, 9, ., 20.70290.95180.8615nono
B8A7A3STAD1_ORYSI1, ., 1, 4, ., 1, 9, ., 20.65300.95750.8871N/Ano
P22243STAD_CARTI1, ., 1, 4, ., 1, 9, ., 20.73230.95180.8484N/Ano
Q9LF04STAD1_ARATH1, ., 1, 4, ., 1, 9, ., 20.71970.95180.8527nono
O24428STAD_ELAGV1, ., 1, 4, ., 1, 9, ., 20.73230.95180.8549N/Ano
Q9M879STAD5_ARATH1, ., 1, 4, ., 1, 9, ., 20.76100.95180.8484yesno
E3PZS1STAD1_OPHSP1, ., 1, 4, ., 1, 9, ., 20.50850.93760.8756N/Ano
E3PZS0STAD3_OPHAA1, ., 1, 4, ., 1, 9, ., 20.71170.95460.8467N/Ano
E3PZS2STAD2_OPHSP1, ., 1, 4, ., 1, 9, ., 20.50590.92060.8643N/Ano
P32061STAD_CUCSA1, ., 1, 4, ., 1, 9, ., 20.72640.95180.8484N/Ano
P32063STAD_CORSA1, ., 1, 4, ., 1, 9, ., 20.63470.93760.8597N/Ano
P32062STAD_LINUS1, ., 1, 4, ., 1, 9, ., 20.73550.91780.8181N/Ano
Q43593STAD_OLEEU1, ., 1, 4, ., 1, 9, ., 20.750.95180.8615N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.190.976
4th Layer1.14.19.20.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.3__205__AT3G02630.1
annotation not avaliable (396 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
PLN00179390 PLN00179, PLN00179, acyl- [acyl-carrier protein] d 0.0
pfam03405330 pfam03405, FA_desaturase_2, Fatty acid desaturase 0.0
cd01050297 cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferr 1e-170
cd00657130 cd00657, Ferritin_like, Ferritin-like superfamily 2e-05
>gnl|CDD|215091 PLN00179, PLN00179, acyl- [acyl-carrier protein] desaturase Back     alignment and domain information 
 Score =  676 bits (1746), Expect = 0.0
 Identities = 254/348 (72%), Positives = 289/348 (83%), Gaps = 2/348 (0%)

Query: 6   VIIIHRDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYE 65
                   VTHSM PEK+EIF+SLE WAE+N+L  LKPV+KSWQP DFLP+   SEGFY+
Sbjct: 45  PPREVHVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPDPA-SEGFYD 103

Query: 66  QVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRA 125
           QVKELRER  +LP ++FV LVG+MITEEALPTYQTMLNTLDGVRDETGAS T WA W RA
Sbjct: 104 QVKELRERAAELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASATPWARWTRA 163

Query: 126 WTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERA 185
           WTAEENRHGDLLNKYLYLSGRVDM+QIEK+IQYLI SGMDPK ENNPY GF+YTSFQERA
Sbjct: 164 WTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERA 223

Query: 186 TFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGM 245
           TFISHGNTARL K+HGD KLA+ICGTIA+DEKRHETAYT+IVEKLFEIDPD  +LA A M
Sbjct: 224 TFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDGAVLAFADM 283

Query: 246 MKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTS 305
           M+K+  MP H MYDG+DD +FDHFSAV QRLGVYT  DYADILE L+ RWKVE+L GL+ 
Sbjct: 284 MRKKITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSG 343

Query: 306 EGRKAQDFVCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIRI 353
           EGR+AQD+VCGLP RIRR LE +A     K    ++PF W+F +E+R+
Sbjct: 344 EGRRAQDYVCGLPPRIRR-LEERAQDRAKKAKPPSIPFSWIFDREVRL 390

Length = 390
>gnl|CDD|217538 pfam03405, FA_desaturase_2, Fatty acid desaturase Back     alignment and domain information
>gnl|CDD|153109 cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 353
PLN00179390 acyl- [acyl-carrier protein] desaturase 100.0
PF03405330 FA_desaturase_2: Fatty acid desaturase; InterPro: 100.0
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 100.0
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 98.84
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 98.06
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 97.44
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 97.08
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 97.01
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 96.94
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 96.88
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 96.8
cd07908154 Mn_catalase_like Manganese catalase-like protein, 96.76
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 96.72
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 96.63
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 96.51
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 96.47
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 96.42
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 96.41
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 96.38
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 96.12
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 95.51
PRK10635158 bacterioferritin; Provisional 95.45
COG1633176 Uncharacterized conserved protein [Function unknow 95.29
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 95.09
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 94.87
PRK13967322 nrdF1 ribonucleotide-diphosphate reductase subunit 94.83
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 94.8
PRK12759410 bifunctional gluaredoxin/ribonucleoside-diphosphat 94.67
PF13668137 Ferritin_2: Ferritin-like domain 94.55
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 94.39
PRK13965335 ribonucleotide-diphosphate reductase subunit beta; 94.22
TIGR00754157 bfr bacterioferritin. Bacterioferritin is a homomu 94.12
PRK13966324 nrdF2 ribonucleotide-diphosphate reductase subunit 93.9
PF04305253 DUF455: Protein of unknown function (DUF455); Inte 93.66
PLN02492324 ribonucleoside-diphosphate reductase 93.57
cd01056161 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferr 93.53
PRK09101376 nrdB ribonucleotide-diphosphate reductase subunit 93.14
PF02332233 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; 93.08
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 92.67
PRK10304165 ferritin; Provisional 92.6
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 91.68
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 91.32
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 91.01
PRK13456186 DNA protection protein DPS; Provisional 89.7
COG1592166 Rubrerythrin [Energy production and conversion] 89.56
PF05138263 PaaA_PaaC: Phenylacetic acid catabolic protein; In 88.03
cd01048135 Ferritin_like_AB2 Uncharacterized family of ferrit 87.08
cd01043139 DPS DPS protein, ferritin-like diiron-binding doma 86.82
cd07908154 Mn_catalase_like Manganese catalase-like protein, 86.81
COG1633176 Uncharacterized conserved protein [Function unknow 85.96
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 85.44
cd01057 465 AAMH_A Aromatic and Alkene Monooxygenase Hydroxyla 85.11
cd00904160 Ferritin Ferritin iron storage proteins. Ferritins 84.03
PRK127751006 putative trifunctional 2-polyprenylphenol hydroxyl 83.27
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 82.5
CHL00185351 ycf59 magnesium-protoporphyrin IX monomethyl ester 82.41
PRK13654355 magnesium-protoporphyrin IX monomethyl ester cycla 81.87
PLN02508357 magnesium-protoporphyrin IX monomethyl ester [oxid 81.02
cd01058304 AAMH_B Aromatic and Alkene Monooxygenase Hydroxyla 80.5
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 80.11
>PLN00179 acyl- [acyl-carrier protein] desaturase Back     alignment and domain information 
Probab=100.00  E-value=9e-131  Score=963.07  Aligned_cols=342  Identities=75%  Similarity=1.228  Sum_probs=335.1

Q ss_pred             hhcccccCCCChhHHHHHHhhHHHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 018588            9 IHRDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGE   88 (353)
Q Consensus         9 ~~~~~~~~~~~~~~~evl~~le~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv~~   88 (353)
                      .++.+++|+|+|+|+|||++|||||++||++||||++++|||||||||+ +|++|+++|++||+++++|||+++||||||
T Consensus        48 ~~~~~~~~~~~~~~~evl~~LE~~ve~~l~~hL~pvek~WqPhDflP~~-~~~~F~~~v~~lr~~~~~Lpd~~~v~Lvgd  126 (390)
T PLN00179         48 EVHVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPDP-ASEGFYDQVKELRERAAELPDDYFVVLVGD  126 (390)
T ss_pred             hhhcccccCCCHHHHHHHHHHHHHHHHHHHHHhchHhhccCccccCCCC-ccCChHHHHhhhhHhhcCCChhhhhhhhhc
Confidence            5668899999999999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             hhhcccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCC
Q 018588           89 MITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKF  168 (353)
Q Consensus        89 ~lTEd~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~  168 (353)
                      |||||||||||++||++||++|++|+++++|++|+++|||||||||++||+||||||+|||+++|+++|++|++||+++.
T Consensus       127 miTEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q~li~~G~d~~~  206 (390)
T PLN00179        127 MITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKT  206 (390)
T ss_pred             chhhhcchHHHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhccCcCHHHHHHHHHHHHhcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhh
Q 018588          169 ENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKK  248 (353)
Q Consensus       169 ~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~  248 (353)
                      +++||++|+|+||||+||+|||+||||+|+++|||+|++||++||+||+||+.||+++|+++||+|||++|.||++||++
T Consensus       207 ~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~tm~Aiadmm~~  286 (390)
T PLN00179        207 ENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDGAVLAFADMMRK  286 (390)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCCCCccCCCCCcchhhhhHHHHHHHhCCCChhcHHHHHHHHHhcccccccccCCHHHHHHHHHHhcchHHHHHHHHhh
Q 018588          249 RFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENK  328 (353)
Q Consensus       249 ~~~MP~~~m~d~~~~~lf~~~a~~a~~~GiY~~~~y~~Il~~ll~~W~i~~~~~L~~eg~~Ar~~l~~l~~r~~r~~er~  328 (353)
                      +|+|||++|+||+|++||+||++++|++||||++||.+||++||++|+|++++|||+||++||||||+||+||+|++||+
T Consensus       287 ki~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l~gLs~eg~kArd~l~~l~~rirr~~era  366 (390)
T PLN00179        287 KITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCGLPPRIRRLEERA  366 (390)
T ss_pred             cCCCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcccCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCCC-CccccceeCCcccC
Q 018588          329 ALVDTAKKGGS-AVPFGWVFGQEIRI  353 (353)
Q Consensus       329 ~~~~~~~~~~~-~~~f~wi~~~~~~~  353 (353)
                      +  +|++++++ .++|||||+|+|.|
T Consensus       367 ~--~~~~~~~~~~~~fsWi~~r~v~~  390 (390)
T PLN00179        367 Q--DRAKKAKPPSIPFSWIFDREVRL  390 (390)
T ss_pred             h--hHHhccCCCCCceeeecCCccCC
Confidence            9  89887644 78999999999975

>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>TIGR00754 bfr bacterioferritin Back     alignment and domain information
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins Back     alignment and domain information
>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>cd01056 Euk_Ferritin eukaryotic ferritins Back     alignment and domain information
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1 Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK10304 ferritin; Provisional Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>PRK13456 DNA protection protein DPS; Provisional Back     alignment and domain information
>COG1592 Rubrerythrin [Energy production and conversion] Back     alignment and domain information
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid [] Back     alignment and domain information
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00904 Ferritin Ferritin iron storage proteins Back     alignment and domain information
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
1oq4_A363 The Crystal Structure Of The Complex Between Stearo 1e-152
1afr_A345 Stearoyl-Acyl Carrier Protein Desaturase From Casto 1e-152
2j2f_A363 The T199d Mutant Of Stearoyl Acyl Carrier Protein D 1e-151
2uw1_A338 Ivy Desaturase Structure Length = 338 1e-135
2uw1_B338 Ivy Desaturase Structure Length = 338 1e-134
1za0_A275 X-Ray Structure Of Putative Acyl-Acp Desaturase Des 3e-06
>pdb|1OQ4|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) And Azide. Length = 363 Back     alignment and structure 
Iteration: 1

 Score =  535 bits (1377), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 249/340 (73%), Positives = 292/340 (85%), Gaps = 4/340 (1%)
Query: 14  VTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRER 73
           VTHSM P+K+EIF+SL+ WAE+N+L+HLKPV+K WQP DFLP+   S+GF EQV+ELRER
Sbjct: 28  VTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDP-ASDGFDEQVRELRER 86
Query: 74  CKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRH 133
            K++P ++FV LVG+MITEEALPTYQTMLNTLDGVRDETGAS TSWA W RAWTAEENRH
Sbjct: 87  AKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRH 146
Query: 134 GDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNT 193
           GDLLNKYLYLSGRVDM+QIEK+IQYLI SGMDP+ EN+PY GF+YTSFQERATFISHGNT
Sbjct: 147 GDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNT 206
Query: 194 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMP 253
           AR  K+HGD+KLAQICGTIA+DEKRHETAYTKIVEKLFEIDPD T+LA A MM+K+  MP
Sbjct: 207 ARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMP 266
Query: 254 GHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDF 313
            H MYDG+DD +FDHFSAV QRLGVYT  DYADILEFL+ RWKV+KL GL++EG+KAQD+
Sbjct: 267 AHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDY 326
Query: 314 VCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIRI 353
           VC LP RIRR LE +A      K    +PF W+F +++++
Sbjct: 327 VCRLPPRIRR-LEERA--QGRAKEAPTMPFSWIFDRQVKL 363
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds Length = 345 Back     alignment and structure
>pdb|2J2F|A Chain A, The T199d Mutant Of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) Length = 363 Back     alignment and structure
>pdb|2UW1|A Chain A, Ivy Desaturase Structure Length = 338 Back     alignment and structure
>pdb|2UW1|B Chain B, Ivy Desaturase Structure Length = 338 Back     alignment and structure
>pdb|1ZA0|A Chain A, X-Ray Structure Of Putative Acyl-Acp Desaturase Desa2 From Mycobacterium Tuberculosis H37rv Length = 275 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 1e-151
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 1e-111
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Length = 338 Back     alignment and structure
 Score =  428 bits (1100), Expect = e-151
 Identities = 221/340 (65%), Positives = 273/340 (80%), Gaps = 4/340 (1%)

Query: 14  VTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRER 73
           VTHSM P+K+EIF+SL+ WA  NVLIHLK V+KSWQP D+LP+   S+GF EQV+ELRER
Sbjct: 3   VTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPV-SDGFEEQVRELRER 61

Query: 74  CKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRH 133
            K++P ++FV LVG+MITEEALPTY +MLN  DG++DETGA  ++WA W RAWTAEENRH
Sbjct: 62  AKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRH 121

Query: 134 GDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNT 193
           GDLLNKYLYLSGRVDM++IEK+IQYLI SGMD K EN+PY GF+YTSFQERATFISH NT
Sbjct: 122 GDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANT 181

Query: 194 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMP 253
           A+L + +GD KLA ICG+IASDEKRH TAYTKIVEKL EIDPD T++A A MM+K+  MP
Sbjct: 182 AKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITMP 241

Query: 254 GHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDF 313
            H MYDG D+ +F HF+AV QRLGVY+  DY DILEFL+++W VE+L GL+ EGRKAQ++
Sbjct: 242 AHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEY 301

Query: 314 VCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIRI 353
           VC L  +IRR+ E         K    +PF W+F +++++
Sbjct: 302 VCELGPKIRRLEERAQ---GRAKEAPTMPFSWIFDRQVKL 338
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Length = 275 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 100.0
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 100.0
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 97.32
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 97.23
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 97.22
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 97.15
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 97.07
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 97.06
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 97.04
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 97.03
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 97.02
1eum_A165 Ferritin 1; ECFTNA, metal binding protein; 2.05A { 97.01
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 97.0
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 96.85
1s3q_A173 Ferritin; ferroxidase, four helix bundle, iron sto 96.84
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 96.74
1lko_A191 Rubrerythrin all-iron(II) form; reduced form, DIIR 96.73
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 96.7
1rcd_A173 L ferritin; iron storage; 2.00A {Rana catesbeiana} 96.69
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 96.53
2v2p_A174 Ferritin light chain; metal transport, iron, haemi 96.45
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 96.44
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 96.41
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 96.38
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 96.35
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 96.32
2cih_A183 Ferritin heavy chain; apoferritin, ferroxidase, DI 96.24
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 96.23
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 96.18
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 96.16
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 96.15
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 96.14
3a68_A212 Sferh-4, ferritin-4, chloroplastic; 4-helix bundle 96.14
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 96.12
3bvf_A181 Ferritin; iron storage, metal-binding, oxidoreduct 96.0
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 95.97
3uno_A189 Probable bacterioferritin BFRB; ferroxidase activi 95.94
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 95.81
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 95.7
3qz3_A184 Ferritin; structural genomics, the center for stru 95.65
2fzf_A175 Hypothetical protein; structural genomics, southea 95.61
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 95.33
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 95.2
1vlg_A176 Ferritin; TM1128, structural genomics, JCSG, prote 95.18
3ka8_A176 Ferritin, middle subunit; iron storage, DIIRON, ir 95.16
3e6s_A168 Ferritin; iron storage, ferroxidase, oxidoreductas 95.04
3vnx_A204 Ferritin; 4-helix bundle, iron storage, oxidoreduc 95.0
3oj5_A189 Ferritin family protein; ferroxidase, cytosol, oxi 95.0
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 94.7
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 94.6
1o9i_A266 Pseudocatalase; oxidoreductase, hexamer, dimangane 94.49
1ji5_A142 DLP-1; dodecamer, four-helix bundle, metal transpo 94.31
3kxu_A191 Ferritin; iron storage protein, disorder, iron, me 94.19
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 94.15
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 94.14
1n1q_A149 DPS protein; four-helix bundle, unknown function; 93.84
1jig_A146 DLP-2; dodecamer, four-helix bundle, metal transpo 93.81
2v8t_A302 Manganese-containing pseudocatalase; manganese cat 93.8
3qhb_A179 Symerythrin, ORF180; four-helix bundle, carboxylat 93.74
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 93.61
2inc_A 491 Toluene, O-xylene monooxygenase oxygenase subunit; 93.52
2vxx_A192 Starvation induced DNA binding protein; stress res 93.39
2fzf_A175 Hypothetical protein; structural genomics, southea 93.14
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 93.09
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 92.88
1mty_D 512 Methane monooxygenase hydroxylase; dinuclear iron 92.65
3k6c_A95 Uncharacterized protein NE0167; structural genomic 92.58
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 91.8
3chh_A336 P-aminobenzoate N-oxygenase; DI-iron oxygenase, ox 91.69
2d5k_A156 DPS, DPS family protein; four helix bundle, metal 91.39
2c41_A158 DPS family DNA-binding stress response protein; ir 90.42
1zpy_A95 Hypothetical protein NE0167; structural genomics, 88.67
1tjo_A182 Iron-rich DPSA-homolog protein; ferritin, low-iron 87.94
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 86.58
1z6o_M191 Ferritin heavy chain; metal binding protein, iron 86.14
2clb_A188 DPS-like protein; DI-iron carboxylate, hypothetica 85.55
2inc_B322 Toluene, O-xylene monooxygenase oxygenase subunit; 85.36
2e0z_A 345 Virus-like particle; bacteriophage, HK97; 3.60A {P 83.79
2bk6_A156 Non-heme iron-containing ferritin; DPS (DNA bindin 80.6
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Back     alignment and structure
Probab=100.00  E-value=7.6e-124  Score=910.17  Aligned_cols=338  Identities=66%  Similarity=1.134  Sum_probs=321.4

Q ss_pred             ccccCCCChhHHHHHHhhHHHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 018588           12 DVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMIT   91 (353)
Q Consensus        12 ~~~~~~~~~~~~evl~~le~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv~~~lT   91 (353)
                      .|++|||+++|+|||++|||||++||++||||++++|||||||||+ +|+||++++++||++|++|||+++++||+||||
T Consensus         1 ~~~~~~~~~~~~e~~~~Le~~~~~~~~~hL~p~~~~Wqp~D~lPw~-~~~~F~~~~~~~~~~~~~l~d~~~v~lv~~~iT   79 (338)
T 2uw1_A            1 MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDP-VSDGFEEQVRELRERAKEIPDDYFVVLVGDMIT   79 (338)
T ss_dssp             -----------CHHHHHTHHHHHHHTGGGSCCGGGCCCGGGGSCCT-TSTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHHHHHHHHHHHHhhhHhhcCCchhcCCCc-cccchhhhcccccHhhccCCHHHHHHHHHHHHh
Confidence            3789999999999999999999999999999999999999999999 899999999999999999999999999999999


Q ss_pred             cccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCC
Q 018588           92 EEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENN  171 (353)
Q Consensus        92 Ed~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~  171 (353)
                      |||||+||++||++||+++++|+++++|++|+++||+||||||++||+||++||+|||+++|++++++|++||+++.+.+
T Consensus        80 Ed~LPtY~~~L~~~fgvrd~~g~~~~~w~~w~~~WtaEEnrHg~aL~~YL~lsgrvDp~~lE~~~~~~i~~Gfd~~~~~~  159 (338)
T 2uw1_A           80 EEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENS  159 (338)
T ss_dssp             HHTHHHHHHHHTTSTTTSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHCCCCCCTTC
T ss_pred             hhcchHHHHHHHHHcCcccccCCCcchHHHHhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998788


Q ss_pred             chhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhhccC
Q 018588          172 PYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFR  251 (353)
Q Consensus       172 p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~~~~  251 (353)
                      |+++|+|+||||+||++||+|||++|+++|||||++||++||+||+||++||+++|+++|++||+++|.||++||+++|+
T Consensus       160 p~~~~vy~sfQE~AT~vsh~n~~r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~le~dpd~~~~Aia~vm~~~~~  239 (338)
T 2uw1_A          160 PYLGFIYTSFQERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKIT  239 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             CCCccCCCCCcchhhhhHHHHHHHhCCCChhcHHHHHHHHHhcccccccccCCHHHHHHHHHHhcchHHHHHHHHhhhhh
Q 018588          252 MPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALV  331 (353)
Q Consensus       252 MP~~~m~d~~~~~lf~~~a~~a~~~GiY~~~~y~~Il~~ll~~W~i~~~~~L~~eg~~Ar~~l~~l~~r~~r~~er~~~~  331 (353)
                      ||||.|+||+++++|++|++++|++||||+++|.+|+++||++|+|++++|||+||++||||||+||+|++||+||++  
T Consensus       240 MPa~~m~dg~~~~~f~~~s~~a~r~GvYt~~dy~dil~~l~~~W~i~~~~gl~~eg~~ard~l~~l~~r~~r~~er~~--  317 (338)
T 2uw1_A          240 MPAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCELGPKIRRLEERAQ--  317 (338)
T ss_dssp             CTTTTCCCSSCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHTTGGGCCSCCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             CCcccCcCCCChhhHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCcccccCCCHHHHHHHHHHHcchHHHHHHHHHhh--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hhhhcCCCCccccceeCCcccC
Q 018588          332 DTAKKGGSAVPFGWVFGQEIRI  353 (353)
Q Consensus       332 ~~~~~~~~~~~f~wi~~~~~~~  353 (353)
                      +|++|+ +.++|||||+|+|.|
T Consensus       318 ~~~~~~-~~~~f~wi~~~~~~~  338 (338)
T 2uw1_A          318 GRAKEA-PTMPFSWIFDRQVKL  338 (338)
T ss_dssp             HHCCCC-CEEEEGGGTTEEEEC
T ss_pred             hhhhcC-CCCCeeEeecCcccC
Confidence            888776 459999999999865
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Back     alignment and structure
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Back     alignment and structure
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ... Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1 Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A* Back     alignment and structure
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A Back     alignment and structure
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A Back     alignment and structure
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa} Back     alignment and structure
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A Back     alignment and structure
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A Back     alignment and structure
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1 Back     alignment and structure
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A Back     alignment and structure
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ... Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A Back     alignment and structure
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp} Back     alignment and structure
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus} Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Back     alignment and structure
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus} Back     alignment and structure
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B* Back     alignment and structure
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} Back     alignment and structure
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 353
d1afra_345 a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protei 1e-173
d1za0a1267 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier pro 1e-108
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 345 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score =  483 bits (1246), Expect = e-173
 Identities = 248/340 (72%), Positives = 292/340 (85%), Gaps = 4/340 (1%)

Query: 14  VTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRER 73
           VTHSM P+K+EIF+SL+ WAE+N+L+HLKPV+K WQP DFLP+   S+GF EQV+ELRER
Sbjct: 10  VTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPA-SDGFDEQVRELRER 68

Query: 74  CKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRH 133
            K++P ++FV LVG+MITEEALPTYQTMLNTLDGVRDETGAS TSWA W RAWTAEENRH
Sbjct: 69  AKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRH 128

Query: 134 GDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNT 193
           GDLLNKYLYLSGRVDM+QIEK+IQYLI SGMDP+ EN+PY GF+YTSFQERATFISHGNT
Sbjct: 129 GDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNT 188

Query: 194 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMP 253
           AR  K+HGD+KLAQICGTIA+DEKRHETAYTKIVEKLFEIDPD T+LA A MM+K+  MP
Sbjct: 189 ARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMP 248

Query: 254 GHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDF 313
            H MYDG+DD +FDHFSAV QRLGVYT  DYADILEFL+ RWKV+KL GL++EG+KAQD+
Sbjct: 249 AHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDY 308

Query: 314 VCGLPLRIRRILENKALVDTAKKGGSAVPFGWVFGQEIRI 353
           VC LP RIRR+ E +A      K    +PF W+F +++++
Sbjct: 309 VCRLPPRIRRL-EERA--QGRAKEAPTMPFSWIFDRQVKL 345
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
d1afra_345 delta 9-stearoyl-acyl carrier protein desaturase { 100.0
d1za0a1267 Possible acyl-[acyl-carrier protein] desaturase {M 100.0
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 97.63
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 97.56
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 97.51
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 97.33
d1s3qa1162 Non-hem ferritin {Archaeon Archaeoglobus fulgidus 97.22
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 97.15
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 97.06
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 97.0
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 96.94
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 96.92
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 96.85
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 96.79
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 96.77
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 96.58
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 96.5
d1vlga_164 Non-hem ferritin {Thermotoga maritima [TaxId: 2336 96.28
d1r03a_171 (Apo)ferritin {Human (Homo sapiens), mitocondial i 96.26
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 96.21
d1krqa_165 Non-hem ferritin {Campylobacter jejuni [TaxId: 197 96.2
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 96.19
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 96.13
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 96.12
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 95.92
d1rcda_171 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 95.83
d1lb3a_179 (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090] 95.65
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 95.47
d2inca1 491 Toluene, o-xylene monooxygenase oxygenase subunit 95.13
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 94.63
d1bg7a_173 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 94.43
d1jk0a_334 Ribonucleotide reductase R2 {Baker's yeast (Saccha 93.86
d1jkva_266 Manganese catalase (T-catalase) {Lactobacillus pla 92.77
d1zpya191 Hypothetical protein NE0167 {Nitrosomonas europaea 91.88
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 89.73
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 88.94
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 88.49
d1umna_151 Dodecameric ferritin homolog {Streptococcus suis [ 84.79
d2cwla1299 Manganese catalase (T-catalase) {Thermus thermophi 84.39
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 81.65
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=5.6e-125  Score=915.74  Aligned_cols=341  Identities=73%  Similarity=1.221  Sum_probs=333.6

Q ss_pred             hhcccccCCCChhHHHHHHhhHHHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 018588            9 IHRDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGE   88 (353)
Q Consensus         9 ~~~~~~~~~~~~~~~evl~~le~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv~~   88 (353)
                      .++.|++|||+|+|+|||++|||||++||+|||||++++|||||||||+ +|++|++++++||+++++|||+++++||+|
T Consensus         5 ~~~~~~~~~~~p~~~ev~~~Le~~ve~~~~~~L~~v~~~WqPhD~lP~~-~~~~F~~~~~e~~~~a~~lpd~~~v~lv~n   83 (345)
T d1afra_           5 EVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDP-ASDGFDEQVRELRERAKEIPDDYFVVLVGD   83 (345)
T ss_dssp             CCSCCCCCCSCTTTHHHHHHTHHHHHHHTGGGSCCGGGSCCGGGGSCCT-TSTTHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             hhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcccCCCC-ccCCcchhccccchhhccCCHHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             hhhcccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCC
Q 018588           89 MITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKF  168 (353)
Q Consensus        89 ~lTEd~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~  168 (353)
                      |||||||||||++||++||++|++|+++++|++|+++|||||||||++||+||++||+|||+++|++++++++.||++++
T Consensus        84 llTEd~LPtY~~~l~~~~g~~d~~g~~~~~W~~Wv~~WTAEEnRHg~aLr~YL~vsr~VDp~~lE~~~~~~~~~G~~~~~  163 (345)
T d1afra_          84 MITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRT  163 (345)
T ss_dssp             HHHHHTHHHHHHHHTTSTTTCCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHCCCCSC
T ss_pred             hhccccCchHHHHHHHHhccccccCCCCcchhhhccccccccchHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhh
Q 018588          169 ENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKK  248 (353)
Q Consensus       169 ~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~  248 (353)
                      +++|+.+|+|+||||+||++||+|||++++.+|||||++||++||+||+||++||+++|+++|++|||++|.||++||++
T Consensus       164 ~~~p~~~~vY~sfQE~AT~vsh~nt~~~a~e~gDPvL~~I~~rIA~DE~rH~~fY~~~v~~~Le~dPd~~v~Ai~~~m~~  243 (345)
T d1afra_         164 ENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRK  243 (345)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhHhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCCCCccCCCCCcchhhhhHHHHHHHhCCCChhcHHHHHHHHHhcccccccccCCHHHHHHHHHHhcchHHHHHHHHhh
Q 018588          249 RFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENK  328 (353)
Q Consensus       249 ~~~MP~~~m~d~~~~~lf~~~a~~a~~~GiY~~~~y~~Il~~ll~~W~i~~~~~L~~eg~~Ar~~l~~l~~r~~r~~er~  328 (353)
                      +|+|||+.|+||+++++|++|++++|++||||+++|.|||++||++|+|++++|||+||++||||||+||+|++||+||+
T Consensus       244 ~f~MP~~~m~dg~~~~~F~~~s~~~~r~GiY~~~d~~dil~~lv~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~  323 (345)
T d1afra_         244 KISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERA  323 (345)
T ss_dssp             CCCCTTTTCCCSSCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTGGGCCSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhcCccccCCCCCcchHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcccccCCCHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCCCCccccceeCCcccC
Q 018588          329 ALVDTAKKGGSAVPFGWVFGQEIRI  353 (353)
Q Consensus       329 ~~~~~~~~~~~~~~f~wi~~~~~~~  353 (353)
                      +  +|++++ ..++|||||||+|.|
T Consensus       324 ~--~ra~~~-~~~~fswi~~r~v~~  345 (345)
T d1afra_         324 Q--GRAKEA-PTMPFSWIFDRQVKL  345 (345)
T ss_dssp             C--HHHHTC-CEEEEGGGTTEEEEC
T ss_pred             H--HhhccC-cCCceeeeccccccC
Confidence            9  888753 468999999999975
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Back     information, alignment and structure
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus suis [TaxId: 1307]} Back     information, alignment and structure
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure