Citrus Sinensis ID: 018652

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Secondary Structure (PSIPRED)
ccccccEEEEEccccEEEcccccEEccccEEEcccccccccccccccccccEEEEccHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccEEEEEcccccEEEccEEEEccccccccHHHHHcccccccccEEEccccccccccEEEccccccccccccccccEEccHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccEEEEEEEEcccccEEEEccccccEEEEEEEccEEEEEEEEcccHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccEEEEccccEEEccEEEEEccccccccccccccccccEEEEEcHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHccHHHHHHHHHHHHHcccEEEEccEEEEEEEccccEEEEEEEccccEEcccEEEEEEcccccHHHHHHccccEccccEEEccccccccccEEEEcccccccccccccEEEEEcHHHHHHHHHHHHHHHHcccccccccccEEEcccccccEEEccEEEccccccccEEEEEccccccEEEEEEEccEEEEEEEccccHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
miyqdpvtsidiEKQTLITNSGKLLKYGSLIvatgctasrfpekiggylpgvhyirdVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVgwkldttiifpenhllqrlftpSLAQRYEQLYQQNGVKFVKGASiknleagsdgrVAAVkledgstidadtivigigakptvspfervglnssvggiqvdgqfrtrmpgifaigdvaafplkmydrtarveHVDHARQSAQHCIKALLSAQthtydylpyFYSRVFEYEGSPRKVWWQFFgdnvgetieignfdpkiatFWIDSGKLKGVlvesgspeefqllptlarsqpfvdkakLQQASSVEEALEIARAALPVEAAV
Flexible Loop (DISEMBL)
miyqdpvtsidiekqTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIknleagsdGRVAAVKledgstidaDTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Low Complexity Region (SEG)
MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKvvvvgggYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Disordered region (IsUnstruct)
********SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVE************************************************
Disordered Region (DISOPRED)
MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEE*LE*****L******
Disordered Region (DISEMBL)
MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH********QHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Disordered Region (DISPRO)
*IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARA********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
P92947	493	Monodehydroascorbate redu	yes	no	0.982	0.701	0.820	1e-173
Q93WJ8	435	Probable monodehydroascor	no	no	0.900	0.728	0.405	4e-71
Q9SR59	441	Probable monodehydroascor	no	no	0.897	0.716	0.397	2e-69
Q43497	433	Monodehydroascorbate redu	N/A	no	0.892	0.725	0.397	8e-69
Q40977	433	Monodehydroascorbate redu	N/A	no	0.883	0.718	0.406	2e-68
Q9LK94	488	Probable monodehydroascor	no	no	0.880	0.635	0.396	3e-66
Q42711	434	Monodehydroascorbate redu	N/A	no	0.909	0.737	0.396	2e-62
Q9LFA3	434	Probable monodehydroascor	no	no	0.892	0.723	0.379	3e-61
P16640	422	Putidaredoxin reductase O	yes	no	0.710	0.592	0.329	3e-32
P43494	427	Rhodocoxin reductase OS=R	yes	no	0.707	0.583	0.343	5e-32

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  607 bits (1564), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 284/346 (82%), Positives = 318/346 (91%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           +IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASRFP+KIGG+LPGVHYIR+VAD
Sbjct: 146 VIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASRFPDKIGGHLPGVHYIREVAD 205

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           AD+LI+SL KAKK+V+VGGGYIGMEVAAAAV W LDTTI+FPE+ LLQRLFTPSLAQ+YE
Sbjct: 206 ADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKYE 265

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
           +LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+ADT+VIGIGAKP + PFE + 
Sbjct: 266 ELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTVVIGIGAKPAIGPFETLA 325

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
           +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  RVEHVDHAR+SAQHC+K+LL+
Sbjct: 326 MNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVEHVDHARRSAQHCVKSLLT 385

Query: 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
           A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+E+GNFDPKIATFWI+SG+LKG
Sbjct: 386 AHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEVGNFDPKIATFWIESGRLKG 445

Query: 301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 346
           VLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEALEIA+AAL
Sbjct: 446 VLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALEIAQAAL 491

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  268 bits (685), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 137/338 (40%), Positives = 205/338 (60%), Gaps = 21/338 (6%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDV 58
           +I    +   D+  +TL++ +G++ KY +L+ ATG +  R  +    G     + Y+R++
Sbjct: 90  LILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADAKNIFYLREL 149

Query: 59  ADADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 116
            DAD L  ++E  +K   VVVGGGYIG+E+ AA     LD T+++PE   + RLFT  +A
Sbjct: 150 EDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCMPRLFTAGIA 209

Query: 117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 176
             YE  Y   G+  VKG         S+G V  VKL+DG T++AD +++G+G +P +S F
Sbjct: 210 SFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGRPIISLF 269

Query: 177 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 236
            +  +    GG++ DG F+T +P ++AIGDVA FP+K+Y+   RVEHVDHAR+SA+  +K
Sbjct: 270 -KDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHARKSAEQAVK 328

Query: 237 ALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-----PK 287
           A+ +A+       YDYLPYFYSR F+       + WQF+GDNVGE++  G+ D     PK
Sbjct: 329 AIKAAEEGNSIPEYDYLPYFYSRAFD-------LSWQFYGDNVGESVLFGDNDPESPKPK 381

Query: 288 IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 325
             ++WI   K+ G  +E GSPEE   +  LAR+QP V+
Sbjct: 382 FGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVE 419

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 135/340 (39%), Positives = 207/340 (60%), Gaps = 24/340 (7%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRD 57
           +I    +   D+  +TL+++ GK+ KY +L++ATG T  R  E IG     +  + Y+R+
Sbjct: 90  LIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSE-IGVQEADVKNIFYLRE 148

Query: 58  VADADALISSLE---KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS 114
           + D+D L  ++E   +  K V++GGG++G+E+++A      + T++FPE  L+ R FT  
Sbjct: 149 IEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPWLVHRFFTAE 208

Query: 115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174
           +A  YE  Y   G+K +KG         SDG V  VKLEDG T++A+ +V G+GA+P  S
Sbjct: 209 IASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGARPATS 268

Query: 175 PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 234
            F +  L    GGI+ DG F+T +P ++A+GDVA FP+KMY  T RVEH D+AR+SA   
Sbjct: 269 LF-KGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHADNARKSAAQA 327

Query: 235 IKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD----- 285
           +KA+ + +       YDYLPYFYSR F       K+ W+F+G+NVGE++  G+ D     
Sbjct: 328 VKAIKAGEEGKTIPDYDYLPYFYSRFF-------KLSWEFYGENVGESVLFGDNDPKSPK 380

Query: 286 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 325
           PK  T+W+  GK+ GV +E G+ EE + +  +AR+QP V+
Sbjct: 381 PKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVE 420

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  261 bits (666), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 133/335 (39%), Positives = 204/335 (60%), Gaps = 21/335 (6%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDV 58
           +I    +   D+  +TL++ +G+  KY +L++ATG T  +  +    G     + Y+R++
Sbjct: 89  LILSTEIVKADLASKTLVSAAGESFKYQTLVIATGTTVLKLSDFGVQGADSKNIFYLREI 148

Query: 59  ADADALISSLEKAK--KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 116
            DAD L+ +L+  K  K VVVGGGYIG+E++A      ++  +++PE   + RLFT  +A
Sbjct: 149 DDADQLVEALKAKKNGKAVVVGGGYIGLELSAVLRLNNIEVNMVYPEPWCMPRLFTEGIA 208

Query: 117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 176
             YE  Y+  GV  +KG      +   +G V  VKL+DG  ++AD +V+G+GA+P  + F
Sbjct: 209 AFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVKEVKLKDGRVLEADIVVVGVGARPLTTLF 268

Query: 177 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 236
            +  +    GGI+ D  F+T +P ++A+GDVA FPLKMY+   RVEHVDH+R+SA+  +K
Sbjct: 269 -KGQVEEEKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYNEIRRVEHVDHSRKSAEQAVK 327

Query: 237 ALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIAT-- 290
           A+ +++       YDYLPYFYSR F+       + WQF+GDNVGET+  G+ DP  AT  
Sbjct: 328 AIFASEQGKSVDEYDYLPYFYSRAFD-------LSWQFYGDNVGETVLFGDADPNSATHK 380

Query: 291 ---FWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 322
              +WI  GK+ G  +ESGSPEE + +  +A+ QP
Sbjct: 381 FGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQP 415

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  259 bits (662), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/332 (40%), Positives = 201/332 (60%), Gaps = 21/332 (6%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDVADADAL 64
           + S D+  + L + +G+   Y +L++ATG    R  +   IG     + Y+R+V DAD L
Sbjct: 94  IVSADLAAKFLKSANGEHFDYQTLVIATGSAVIRLTDFGVIGANAKNIFYLREVDDADKL 153

Query: 65  ISSLEKAK--KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 122
             ++++ K  K VVVGGGYIG+E++A      LD T+++PE   + RLFT  +A  YE  
Sbjct: 154 YEAIKRKKNAKRVVVGGGYIGLELSAVLKLNDLDVTMVYPEPWCMPRLFTSEIAAFYEGY 213

Query: 123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 182
           Y   G+  +KG       A SDG V  VKL+DG  ++AD +++G+G +P +S F +  + 
Sbjct: 214 YANKGINIIKGTVAVGFTANSDGEVKEVKLKDGRVLEADIVIVGVGGRPQISLF-KGQVE 272

Query: 183 SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA- 241
              GGI+ D  F+T +P ++A+GDVA FPLK+Y+   RVEHVDHAR+SA+   KA+ +A 
Sbjct: 273 EQHGGIKTDSFFKTSVPDVYAVGDVATFPLKLYNDVRRVEHVDHARKSAEQAAKAIFAAD 332

Query: 242 ---QTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-----PKIATFWI 293
                  YDYLPYFYSR F+       + WQF+GDNVGET+  G+ D     PK  T+WI
Sbjct: 333 VGKSVEEYDYLPYFYSRSFD-------LSWQFYGDNVGETVLFGDNDPASSKPKFGTYWI 385

Query: 294 DSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 325
             GK+ G  +E G+P+E + +  +AR++P V+
Sbjct: 386 KEGKVVGAFLEGGTPDENKAIAKVARAKPAVE 417

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  252 bits (644), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 129/325 (39%), Positives = 201/325 (61%), Gaps = 15/325 (4%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDVADADAL 64
           V S+D+ ++TL++++G+ + Y  LI+ATG  A +  E    G     V Y+RD+ADA+ L
Sbjct: 94  VKSVDVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAENVCYLRDLADANRL 153

Query: 65  ISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 122
            + ++ +     VV+GGGYIGME AA+ V  K++ T++FPE H + RLFTP +A  YE  
Sbjct: 154 ATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASLYEDY 213

Query: 123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 182
           Y+  GVKF+KG  + + E  S+ +V AV L+DGS + AD +V+GIG +P  S FE   L 
Sbjct: 214 YRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGIRPNTSLFEG-QLT 272

Query: 183 SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA- 241
              GGI+V+ + ++    ++AIGDVA FP+K++    R+EHVD AR+SA+H + A++   
Sbjct: 273 IEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSARKSARHAVSAIMDPI 332

Query: 242 QTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD--PKIATFWIDSGKLK 299
           +T  +DYLP+FYSRVF +        WQF+GD  G+ +  G ++       +W+  G L 
Sbjct: 333 KTGDFDYLPFFYSRVFAFS-------WQFYGDPTGDVVHFGEYEDGKSFGAYWVKKGHLV 385

Query: 300 GVLVESGSPEEFQLLPTLARSQPFV 324
           G  +E G+ EE++ +    + +P V
Sbjct: 386 GSFLEGGTKEEYETISKATQLKPAV 410

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 136/343 (39%), Positives = 206/343 (60%), Gaps = 23/343 (6%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDV 58
           +I    +   D+  + L +  GK+  Y +LI+ATG T  +  +    G     + Y+R++
Sbjct: 89  LILSTEIVEADLPAKRLRSAHGKIYNYQTLIIATGSTVIKLSDFGVQGADAKNIFYLREI 148

Query: 59  ADADALISSLEKAKK---VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL 115
            DAD L+ ++ KAK+   VVVVGGGYIG+E+ AA      D ++++PE   + RLFTP +
Sbjct: 149 DDADQLVEAI-KAKENGKVVVVGGGYIGLELGAALRINNFDVSMVYPEPWCMPRLFTPEI 207

Query: 116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 175
           A  YE  Y Q G+  +KG         ++G V  VKL+DG  ++AD +V+G+GA+P  S 
Sbjct: 208 AAFYEGYYAQKGITIIKGTVAVGFTVDTNGEVKEVKLKDGRVLEADIVVVGVGARPLTSL 267

Query: 176 FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI 235
           F +  +    GGI+ D  F+T +P ++A+GDVA FPLK+Y+   RVEHVDH+R+SA+  +
Sbjct: 268 F-KGQIVEEKGGIKTDEFFKTSVPDVYAVGDVATFPLKLYNELRRVEHVDHSRKSAEQAV 326

Query: 236 KALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDP----- 286
           KA+ +++       YDYLPYFYSR F+       + WQF+GDNVG+ +  G+  P     
Sbjct: 327 KAIKASEEGKAIEEYDYLPYFYSRSFD-------LSWQFYGDNVGDAVLFGDNSPDSATH 379

Query: 287 KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 329
           K  ++WI  GK+ G  +ESGSPEE + +  +AR QP V+ + L
Sbjct: 380 KFGSYWIKDGKVVGAFLESGSPEENKAIAKVARIQPSVESSDL 422

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  236 bits (601), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 197/335 (58%), Gaps = 21/335 (6%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDV 58
           +I    +   D+  ++L++ +G + KY +LI+ATG T  R  +    G     + Y+R++
Sbjct: 89  LILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVKGADSKNILYLREI 148

Query: 59  ADADALISSLEKAKKVVVVGGG--YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 116
            DAD L+ +++  K    V  G  YIG+E++A      LD T++FPE   + RLFT  +A
Sbjct: 149 DDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPWCMPRLFTADIA 208

Query: 117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 176
             YE  Y   GVK +KG       A  +G V  V+L+DG T++AD +++G+GAKP  S F
Sbjct: 209 AFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAKPLTSLF 268

Query: 177 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 236
            +  +    GGI+ D  F+T +P ++A+GDVA FPLKMY    RVEHVDH+R+SA+  +K
Sbjct: 269 -KGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDHSRKSAEQAVK 327

Query: 237 ALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG-----NFDPK 287
           A+ +A+       YDYLP+FYSR F+       + WQF+GDNVG+++  G     N  P+
Sbjct: 328 AIKAAEGGAAVEEYDYLPFFYSRSFD-------LSWQFYGDNVGDSVLFGDSNPSNPKPR 380

Query: 288 IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 322
              +W+  GK+ G  +E GS +E + L  +A+++P
Sbjct: 381 FGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARP 415

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 136/255 (53%), Gaps = 5/255 (1%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG--GYLPGVHYIRDVADADAL 64
           VT+I+ ++Q +I + G+ L Y  L++ATG      P   G  G      Y+R + DA+ +
Sbjct: 83  VTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECI 142

Query: 65  ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
              L    ++VV+GGGYIG+EVAA A+   +  T++     +L+R+  P ++  YE L++
Sbjct: 143 RRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHR 202

Query: 125 QNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 183
           + GV    G  +   E  +D  +V AV  EDG+ + AD ++ GIG  P        GL  
Sbjct: 203 EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQV 262

Query: 184 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 243
              GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+  I A+L  + 
Sbjct: 263 D-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAAILCGKV 320

Query: 244 HTYDYLPYFYSRVFE 258
              +  P+F+S  +E
Sbjct: 321 PRDEAAPWFWSDQYE 335

The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

>sp|P43494|THCD_RHOER Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 130/253 (51%), Gaps = 4/253 (1%)

Query: 6   PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI 65
           PV  ID + Q +       ++Y  LI+ATG      P   G  LPGVHY+R   +A++L 
Sbjct: 78  PVVRIDRDAQRVELIDATAIEYDHLILATGARNRLLPVP-GANLPGVHYLRTAGEAESLT 136

Query: 66  SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 125
           SS+     +VV+G G+IG+EVAAAA    LD T++   +  + R  +  ++  +   + +
Sbjct: 137 SSMASCSSLVVIGAGFIGLEVAAAARKKGLDVTVVEAMDRPMARALSSVMSGYFSTAHTE 196

Query: 126 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV 185
           +GV       +K + A +DGR A V    G  I AD +V+GIG  P +      GL    
Sbjct: 197 HGVHMRLSTGVKTINA-ADGRAAGVTTNSGDVIHADAVVVGIGVVPNIELAALTGLPVD- 254

Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT 245
            GI VD   RT    I AIGD AA+P+       R+E V +A   A+ C+ A L+  +  
Sbjct: 255 NGIVVDEYLRTPDENISAIGDCAAYPIPGKAGLVRLESVQNAVDQAR-CLAAQLTGTSTH 313

Query: 246 YDYLPYFYSRVFE 258
           Y  +P+F+S  +E
Sbjct: 314 YRSVPWFWSEQYE 326

The degradation of the thiocarbamate herbicide EPTC by cytochrome CYP116 (thcB) requires the participation of a flavoprotein, rhodocoxin reductase, and an iron-sulfur protein, rhodocoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Rhodococcus erythropolis (taxid: 1833)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
359474156	497	PREDICTED: monodehydroascorbate reductas	1.0	0.708	0.852	1e-180
297742237	490	unnamed protein product [Vitis vinifera]	1.0	0.718	0.852	1e-180
147834040	889	hypothetical protein VITISV_021486 [Viti	1.0	0.395	0.821	1e-178
224058437	497	predicted protein [Populus trichocarpa]	0.994	0.704	0.843	1e-178
350536875	482	monodehydroascorbate reductase [Solanum	0.982	0.717	0.846	1e-174
359807289	478	uncharacterized protein LOC100819919 [Gl	1.0	0.736	0.849	1e-174
110265126	482	chloroplast monodehydroascorbate reducta	0.982	0.717	0.843	1e-174
255537579	493	monodehydroascorbate reductase, putative	0.982	0.701	0.869	1e-174
356511468	469	PREDICTED: LOW QUALITY PROTEIN: monodehy	1.0	0.750	0.829	1e-172
15320419	497	monodehydroascorbate reductase [Spinacia	0.982	0.696	0.826	1e-172

>gi|359474156|ref|XP_002278648.2| PREDICTED: monodehydroascorbate reductase, chloroplastic [Vitis vinifera]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 300/352 (85%), Positives = 331/352 (94%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           M+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P+KIGG LPGVHYIRDVAD
Sbjct: 146 MLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLPDKIGGNLPGVHYIRDVAD 205

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           AD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFPE+HLLQRLFTP+LA+RYE
Sbjct: 206 ADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFPEDHLLQRLFTPTLARRYE 265

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
           + YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADTI+IGIGAKP VSPFERVG
Sbjct: 266 EFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADTIIIGIGAKPAVSPFERVG 325

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
           +N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVEHVDHAR+SAQHCI ALL+
Sbjct: 326 INTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVEHVDHARRSAQHCINALLT 385

Query: 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
           A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIGNFDPKIATFWIDSGKLKG
Sbjct: 386 AKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKG 445

Query: 301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV 352
           VL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A A +   AAV
Sbjct: 446 VLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALELAHAYVQAGAAV 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742237|emb|CBI34386.3| unnamed protein product [Vitis vinifera]

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 300/352 (85%), Positives = 331/352 (94%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           M+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P+KIGG LPGVHYIRDVAD
Sbjct: 139 MLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLPDKIGGNLPGVHYIRDVAD 198

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           AD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFPE+HLLQRLFTP+LA+RYE
Sbjct: 199 ADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFPEDHLLQRLFTPTLARRYE 258

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
           + YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADTI+IGIGAKP VSPFERVG
Sbjct: 259 EFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADTIIIGIGAKPAVSPFERVG 318

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
           +N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVEHVDHAR+SAQHCI ALL+
Sbjct: 319 INTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVEHVDHARRSAQHCINALLT 378

Query: 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
           A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIGNFDPKIATFWIDSGKLKG
Sbjct: 379 AKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKG 438

Query: 301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV 352
           VL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A A +   AAV
Sbjct: 439 VLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALELAHAYVQAGAAV 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834040|emb|CAN64338.1| hypothetical protein VITISV_021486 [Vitis vinifera]

 Score =  629 bits (1621), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 300/365 (82%), Positives = 331/365 (90%), Gaps = 13/365 (3%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-------------FPEKIGG 47
           M+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR              P+KIGG
Sbjct: 525 MLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRRSEDEFFSSPDFRLPDKIGG 584

Query: 48  YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107
            LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFPE+HLL
Sbjct: 585 NLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFPEDHLL 644

Query: 108 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 167
           QRLFTP+LA+RYE+ YQ+NGVKFVKGASIKN+EAGSDG V AVKLE+GSTI+ADTI+IGI
Sbjct: 645 QRLFTPTLARRYEEFYQENGVKFVKGASIKNIEAGSDGHVTAVKLENGSTIEADTIIIGI 704

Query: 168 GAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 227
           GAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVEHVDHA
Sbjct: 705 GAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARVEHVDHA 764

Query: 228 RQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPK 287
           R+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EIGNFDPK
Sbjct: 765 RRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPK 824

Query: 288 IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALP 347
           IATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD  KLQ+ASSVEEALE+A A + 
Sbjct: 825 IATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPQVDMTKLQKASSVEEALELAHATVQ 884

Query: 348 VEAAV 352
             AAV
Sbjct: 885 AGAAV 889

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058437|ref|XP_002299509.1| predicted protein [Populus trichocarpa] gi|118488230|gb|ABK95934.1| unknown [Populus trichocarpa] gi|222846767|gb|EEE84314.1| predicted protein [Populus trichocarpa]

 Score =  629 bits (1621), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 297/352 (84%), Positives = 330/352 (93%), Gaps = 2/352 (0%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           M+Y+DPVT IDIEKQT  T SGKLLKYG+LIVATGC+ASRFPEKIGG LPGVHYIRDVAD
Sbjct: 148 MLYEDPVTGIDIEKQTATTISGKLLKYGTLIVATGCSASRFPEKIGGNLPGVHYIRDVAD 207

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           AD+LISSLEKA K+V+VGGGYIGMEVAAAAV WKLDTTIIFPENHL+QRLFTPSLAQ+YE
Sbjct: 208 ADSLISSLEKAHKLVIVGGGYIGMEVAAAAVAWKLDTTIIFPENHLMQRLFTPSLAQKYE 267

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
           +LYQ+NGVKF+KGASIKNLEA SDG VAA+KLE+GSTI+AD ++IGIGAKP V PFER+G
Sbjct: 268 ELYQENGVKFIKGASIKNLEASSDGHVAAIKLENGSTIEADMVIIGIGAKPAVGPFERLG 327

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
           LN+SVGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARVEHVDHAR+SAQHC+K+LL+
Sbjct: 328 LNNSVGGIQVDGQFRTGIPGIFAIGDVAAFPLKMYNRMARVEHVDHARRSAQHCVKSLLT 387

Query: 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
           A T +YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI++GNFDPKIATFWIDSGKLKG
Sbjct: 388 AHTSSYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIQVGNFDPKIATFWIDSGKLKG 447

Query: 301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV 352
           VL+ESGSPEEFQLLP LA+SQP VDK+KLQ ASSVEEALEIAR +L  +AAV
Sbjct: 448 VLLESGSPEEFQLLPELAKSQPIVDKSKLQSASSVEEALEIARTSL--QAAV 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536875|ref|NP_001234013.1| monodehydroascorbate reductase [Solanum lycopersicum] gi|195542238|gb|AAZ66138.2| monodehydroascorbate reductase [Solanum lycopersicum] gi|299507810|gb|ADJ21816.1| monodehydroascorbate reductase [Solanum lycopersicum var. cerasiforme]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 293/346 (84%), Positives = 322/346 (93%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           M+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEKIGG LPGVHYIRDVAD
Sbjct: 137 MLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEKIGGNLPGVHYIRDVAD 196

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           AD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE HLL RLFTPSLAQ+YE
Sbjct: 197 ADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEEHLLSRLFTPSLAQKYE 256

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
           QLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DT+VIGIGAKP VSPF+ VG
Sbjct: 257 QLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVVIGIGAKPAVSPFDMVG 316

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
           LN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEHVDHAR+SAQHCIK+LL+
Sbjct: 317 LNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEHVDHARKSAQHCIKSLLT 376

Query: 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
           A THTYDYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNFDPK+ATFWIDSGKLKG
Sbjct: 377 AHTHTYDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGNFDPKVATFWIDSGKLKG 436

Query: 301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 346
           VL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+A+L
Sbjct: 437 VLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQASL 482

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807289|ref|NP_001241372.1| uncharacterized protein LOC100819919 [Glycine max] gi|255635874|gb|ACU18284.1| unknown [Glycine max]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/352 (84%), Positives = 330/352 (93%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           M+Y+DPV  IDIEK TL T+SGKLLKYGSL++ATGCTASRFPEKIGG LPGVHYIRDV D
Sbjct: 127 MLYEDPVKDIDIEKHTLTTSSGKLLKYGSLVIATGCTASRFPEKIGGNLPGVHYIRDVGD 186

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           ADALI SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE+HLLQRLFTPSLA+RYE
Sbjct: 187 ADALILSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEDHLLQRLFTPSLARRYE 246

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
           +LYQ+NGVK +KGASIKNLEAGS+G VAAVKL DGS ++ADT++IGIGAKP V+PFERVG
Sbjct: 247 ELYQKNGVKILKGASIKNLEAGSNGHVAAVKLGDGSLVEADTVIIGIGAKPAVTPFERVG 306

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
           LN+ VGGIQVDGQFRT  PGIFA+GDVAAFPLK+Y+R +RVEHVDHAR+SAQHC+KALLS
Sbjct: 307 LNTEVGGIQVDGQFRTSTPGIFAVGDVAAFPLKIYNRISRVEHVDHARRSAQHCVKALLS 366

Query: 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
           AQTHTYDYLPYFYSR+FEYEGSPRKVWWQFFGDNVGET+EIGNFDPKI+TFWI+SGKLKG
Sbjct: 367 AQTHTYDYLPYFYSRIFEYEGSPRKVWWQFFGDNVGETVEIGNFDPKISTFWIESGKLKG 426

Query: 301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV 352
           VL+ESGSPEEFQLLP LARSQP +DKAKLQ A+SVEEALEIAR +L  EAAV
Sbjct: 427 VLLESGSPEEFQLLPKLARSQPLIDKAKLQNATSVEEALEIARESLQGEAAV 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110265126|gb|ABG57052.1| chloroplast monodehydroascorbate reductase [Solanum lycopersicum]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/346 (84%), Positives = 322/346 (93%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           M+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEKIGG LPGVHYIRDVAD
Sbjct: 137 MLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEKIGGNLPGVHYIRDVAD 196

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           AD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE HLL RLFTPSLAQ+YE
Sbjct: 197 ADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEEHLLSRLFTPSLAQKYE 256

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
           QLYQ +GVKFVKGA IK+LE+G D RV AVKLEDGS+I+ DT+VIGIGAKP VSPF+ VG
Sbjct: 257 QLYQDSGVKFVKGAKIKHLESGPDSRVTAVKLEDGSSIETDTVVIGIGAKPAVSPFDMVG 316

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
           LN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEHVDHAR+SAQHCIK+LL+
Sbjct: 317 LNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEHVDHARKSAQHCIKSLLT 376

Query: 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
           A THT+DYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNFDPK+ATFWIDSGKLKG
Sbjct: 377 AHTHTHDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGNFDPKVATFWIDSGKLKG 436

Query: 301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 346
           VL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+A+L
Sbjct: 437 VLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQASL 482

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537579|ref|XP_002509856.1| monodehydroascorbate reductase, putative [Ricinus communis] gi|223549755|gb|EEF51243.1| monodehydroascorbate reductase, putative [Ricinus communis]

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 301/346 (86%), Positives = 329/346 (95%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           M+Y+DPVTSIDIEKQTL TNSGKLLKYG+LI+ATG TASRFPEKIGG LPGVHYIRDVAD
Sbjct: 144 MLYEDPVTSIDIEKQTLGTNSGKLLKYGTLIIATGSTASRFPEKIGGSLPGVHYIRDVAD 203

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           AD+LISSL+KA+KVVVVGGGYIGMEVAAAAVGW LDTTIIFPE HLLQRLFTPSLAQRYE
Sbjct: 204 ADSLISSLDKARKVVVVGGGYIGMEVAAAAVGWNLDTTIIFPEKHLLQRLFTPSLAQRYE 263

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
           +LY++NGVKF+KGASIKNLEAGSDG VA VKLEDGS I+ADT+VIGIGAKP VSPFE+VG
Sbjct: 264 ELYKENGVKFLKGASIKNLEAGSDGHVATVKLEDGSIIEADTVVIGIGAKPAVSPFEQVG 323

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
           LN++VGGIQVDGQFRT  PGIFAIGDVAAFPLKMY+RTARVEHVDHAR+SA+HC+KALLS
Sbjct: 324 LNATVGGIQVDGQFRTNKPGIFAIGDVAAFPLKMYNRTARVEHVDHARRSARHCVKALLS 383

Query: 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
           AQT TYDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGE +EIGNFDPKIATFWIDSGKLKG
Sbjct: 384 AQTSTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGEAVEIGNFDPKIATFWIDSGKLKG 443

Query: 301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 346
           +L+ESGS EEFQLLP LARSQP VDK+KL +ASSVEEALEIA+A+L
Sbjct: 444 ILLESGSAEEFQLLPKLARSQPSVDKSKLLKASSVEEALEIAQASL 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511468|ref|XP_003524448.1| PREDICTED: LOW QUALITY PROTEIN: monodehydroascorbate reductase, chloroplastic-like [Glycine max]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 292/352 (82%), Positives = 321/352 (91%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           M+Y+DPV  IDIEK TL T+SGKLLKYGSLI+ATGCTASRFPEKIGG LPGVHYIR VAD
Sbjct: 118 MLYEDPVKDIDIEKHTLTTSSGKLLKYGSLIIATGCTASRFPEKIGGNLPGVHYIRHVAD 177

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           AD LI SLEKAKKVVVV GGYIGMEVAAAAVGWKLD TIIFPE+ LLQRLFTPSLA+RYE
Sbjct: 178 ADTLILSLEKAKKVVVVRGGYIGMEVAAAAVGWKLDATIIFPEDDLLQRLFTPSLARRYE 237

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
           +LYQ+NGVK +KGASIKNL AGS+G VAAVKL DGS ++ADT++IGIGA+P VSPFERVG
Sbjct: 238 ELYQKNGVKVLKGASIKNLXAGSNGHVAAVKLGDGSILEADTVIIGIGARPAVSPFERVG 297

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
            N+ VGGIQVDGQFRT  PGIFA+GDVAAFPLK+Y+R +RVEHVDHAR+SAQHC+KALLS
Sbjct: 298 QNTDVGGIQVDGQFRTSTPGIFAVGDVAAFPLKIYNRISRVEHVDHARRSAQHCVKALLS 357

Query: 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
           AQTHTYDYLPYFYSR+FEYEGSPRKVWWQFF D VGET+EIGNFDPKIATFWI+SGKLKG
Sbjct: 358 AQTHTYDYLPYFYSRIFEYEGSPRKVWWQFFRDKVGETVEIGNFDPKIATFWIESGKLKG 417

Query: 301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAALPVEAAV 352
           VL+ESGSPEEFQLLP LARSQP +DKAKLQ A+SVEEALEIAR +L  EA V
Sbjct: 418 VLLESGSPEEFQLLPKLARSQPLIDKAKLQNATSVEEALEIARGSLQGEAVV 469

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15320419|dbj|BAB63925.1| monodehydroascorbate reductase [Spinacia oleracea]

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/346 (82%), Positives = 320/346 (92%)

Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           MIY+D VT +DIEK TL T SGK LKYGSLIVATGCTA+RFPEKIGG LPGVHY+RDVAD
Sbjct: 152 MIYEDAVTGVDIEKHTLQTQSGKSLKYGSLIVATGCTATRFPEKIGGNLPGVHYVRDVAD 211

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           AD+LI SL+KAKKVV+VGGGYIGMEVAAAAVGW LDTT+IFPE+HLLQRLFTPSLA++YE
Sbjct: 212 ADSLIESLKKAKKVVIVGGGYIGMEVAAAAVGWNLDTTVIFPEDHLLQRLFTPSLARKYE 271

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
           +LY+QNGVKFVKGA IKNLEAGSDG VAAV LE+GSTI+ADTI+IGIGAKP V PFE VG
Sbjct: 272 ELYEQNGVKFVKGAMIKNLEAGSDGSVAAVNLENGSTIEADTIIIGIGAKPAVGPFENVG 331

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
           L+++VGGI+VDG FR+++PGIFAIGDVAAFPLKMYDR ARVEHVDHAR+SAQHC+ ALLS
Sbjct: 332 LDTTVGGIEVDGLFRSKVPGIFAIGDVAAFPLKMYDRVARVEHVDHARKSAQHCVSALLS 391

Query: 241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
           A+THTYDYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GNFDPKIATFWIDSG+LKG
Sbjct: 392 ARTHTYDYLPYFYSRVFEYEGSQRKVWWQFFGDNVGEAVEVGNFDPKIATFWIDSGRLKG 451

Query: 301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 346
           VLVESGSPEEFQLLP +A++QP VDKAKLQ ASSVEEALEI   ++
Sbjct: 452 VLVESGSPEEFQLLPKIAKAQPLVDKAKLQSASSVEEALEIIHQSM 497

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.982	0.701	0.806	1.1e-151
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.946	0.765	0.381	1.6e-63
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.934	0.746	0.383	4.8e-62
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	0.880	0.635	0.387	1.3e-59
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.892	0.673	0.376	1.3e-59
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.875	0.764	0.298	2.3e-30
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.863	0.739	0.293	3.1e-28
WB|WBGene00017640	549	F20D6.11 [Caenorhabditis elega	0.829	0.531	0.301	3.1e-27
UNIPROTKB|Q19655	549	F20D6.11 "Protein F20D6.11" [C	0.829	0.531	0.301	3.1e-27
UNIPROTKB|D5IGG6	414	fdr "Ferredoxin--NAD(P)(+) red	0.704	0.599	0.307	3.2e-26

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1480 (526.0 bits), Expect = 1.1e-151, P = 1.1e-151
 Identities = 279/346 (80%), Positives = 311/346 (89%)

Query:     1 MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
             +IY+DPV   D EKQTL T++GK LKYGSLI+ATGCTASRFP+KIGG+LPGVHYIR+VAD
Sbjct:   146 VIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASRFPDKIGGHLPGVHYIREVAD 205

Query:    61 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
             AD+LI+SL KAKK       YIGMEVAAAAV W LDTTI+FPE+ LLQRLFTPSLAQ+YE
Sbjct:   206 ADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKYE 265

Query:   121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
             +LY+QNGVKFVKGASI NLEAGSDGRV+AVKL DGSTI+ADT+VIGIGAKP + PFE + 
Sbjct:   266 ELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTVVIGIGAKPAIGPFETLA 325

Query:   181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 240
             +N S+GGIQVDG FRT  PGIFAIGDVAAFPLK+YDR  RVEHVDHAR+SAQHC+K+LL+
Sbjct:   326 MNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVEHVDHARRSAQHCVKSLLT 385

Query:   241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKG 300
             A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+E+GNFDPKIATFWI+SG+LKG
Sbjct:   386 AHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEVGNFDPKIATFWIESGRLKG 445

Query:   301 VLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIARAAL 346
             VLVESGSPEEFQLLP LARSQP VDKAKL  ASSVEEALEIA+AAL
Sbjct:   446 VLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALEIAQAAL 491

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 135/354 (38%), Positives = 204/354 (57%)

Query:     1 MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDV 58
             +I    +   D+  +TL++ +G++ KY +L+ ATG +  R  +    G     + Y+R++
Sbjct:    90 LILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADAKNIFYLREL 149

Query:    59 ADADALISSLE-KAK-KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 116
              DAD L  ++E K K K       YIG+E+ AA     LD T+++PE   + RLFT  +A
Sbjct:   150 EDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCMPRLFTAGIA 209

Query:   117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 176
               YE  Y   G+  VKG         S+G V  VKL+DG T++AD +++G+G +P +S F
Sbjct:   210 SFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGRPIISLF 269

Query:   177 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 236
             +   +    GG++ DG F+T +P ++AIGDVA FP+K+Y+   RVEHVDHAR+SA+  +K
Sbjct:   270 KDQ-VEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHARKSAEQAVK 328

Query:   237 ALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDP-----K 287
             A+ +A+       YDYLPYFYSR F+         WQF+GDNVGE++  G+ DP     K
Sbjct:   329 AIKAAEEGNSIPEYDYLPYFYSRAFDLS-------WQFYGDNVGESVLFGDNDPESPKPK 381

Query:   288 IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 341
               ++WI   K+ G  +E GSPEE   +  LAR+QP V+  ++     +  A  I
Sbjct:   382 FGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKEGLSFATNI 435

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 137/357 (38%), Positives = 207/357 (57%)

Query:     1 MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRD 57
             +I    +   D+  +TL+++ GK+ KY +L++ATG T  R  E IG     +  + Y+R+
Sbjct:    90 LIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSE-IGVQEADVKNIFYLRE 148

Query:    58 VADADALISSLE---KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS 114
             + D+D L  ++E   +  K       ++G+E+++A      + T++FPE  L+ R FT  
Sbjct:   149 IEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPWLVHRFFTAE 208

Query:   115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174
             +A  YE  Y   G+K +KG         SDG V  VKLEDG T++A+ +V G+GA+P  S
Sbjct:   209 IASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGARPATS 268

Query:   175 PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 234
              F+   L    GGI+ DG F+T +P ++A+GDVA FP+KMY  T RVEH D+AR+SA   
Sbjct:   269 LFKGQ-LEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHADNARKSAAQA 327

Query:   235 IKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPK--- 287
             +KA+ + +       YDYLPYFYSR F       K+ W+F+G+NVGE++  G+ DPK   
Sbjct:   328 VKAIKAGEEGKTIPDYDYLPYFYSRFF-------KLSWEFYGENVGESVLFGDNDPKSPK 380

Query:   288 --IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIA 342
                 T+W+  GK+ GV +E G+ EE + +  +AR+QP V+   L   S  EE L  A
Sbjct:   381 PKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVES--LDVLS--EEGLSFA 433

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 126/325 (38%), Positives = 196/325 (60%)

Query:     7 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDVADADAL 64
             V S+D+ ++TL++++G+ + Y  LI+ATG  A +  E    G     V Y+RD+ADA+ L
Sbjct:    94 VKSVDVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAENVCYLRDLADANRL 153

Query:    65 ISSLEKAKKXXXXXXX--YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 122
              + ++ +           YIGME AA+ V  K++ T++FPE H + RLFTP +A  YE  
Sbjct:   154 ATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASLYEDY 213

Query:   123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 182
             Y+  GVKF+KG  + + E  S+ +V AV L+DGS + AD +V+GIG +P  S FE   L 
Sbjct:   214 YRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGIRPNTSLFEGQ-LT 272

Query:   183 SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA- 241
                GGI+V+ + ++    ++AIGDVA FP+K++    R+EHVD AR+SA+H + A++   
Sbjct:   273 IEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSARKSARHAVSAIMDPI 332

Query:   242 QTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNF-DPK-IATFWIDSGKLK 299
             +T  +DYLP+FYSRVF +        WQF+GD  G+ +  G + D K    +W+  G L 
Sbjct:   333 KTGDFDYLPFFYSRVFAFS-------WQFYGDPTGDVVHFGEYEDGKSFGAYWVKKGHLV 385

Query:   300 GVLVESGSPEEFQLLPTLARSQPFV 324
             G  +E G+ EE++ +    + +P V
Sbjct:   386 GSFLEGGTKEEYETISKATQLKPAV 410

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 126/335 (37%), Positives = 195/335 (58%)

Query:     1 MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPGVHYIRDV 58
             +I    +   D+  ++L++ +G + KY +LI+ATG T  R  +    G     + Y+R++
Sbjct:   121 LILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVKGADSKNILYLREI 180

Query:    59 ADADALISSLEKAK--KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 116
              DAD L+ +++  K  K       YIG+E++A      LD T++FPE   + RLFT  +A
Sbjct:   181 DDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPWCMPRLFTADIA 240

Query:   117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 176
               YE  Y   GVK +KG       A  +G V  V+L+DG T++AD +++G+GAKP  S F
Sbjct:   241 AFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAKPLTSLF 300

Query:   177 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 236
             +   +    GGI+ D  F+T +P ++A+GDVA FPLKMY    RVEHVDH+R+SA+  +K
Sbjct:   301 KGQ-VEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDHSRKSAEQAVK 359

Query:   237 ALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG-----NFDPK 287
             A+ +A+       YDYLP+FYSR F+         WQF+GDNVG+++  G     N  P+
Sbjct:   360 AIKAAEGGAAVEEYDYLPFFYSRSFDLS-------WQFYGDNVGDSVLFGDSNPSNPKPR 412

Query:   288 IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 322
                +W+  GK+ G  +E GS +E + L  +A+++P
Sbjct:   413 FGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARP 447

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 96/322 (29%), Positives = 151/322 (46%)

Query:     7 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
             V++ID   +T ++  G+++ Y  L + TG    R P  IGG L GVH +RD+AD DA+  
Sbjct:    80 VSAIDPAAKT-VSLGGEVIPYDQLALTTGSEPRRLPAAIGGDLAGVHVVRDLADIDAMAP 138

Query:    67 SLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 126
             S+ +  +       YIG+E AA      +  T++   + +LQR+  P  +  +  L+  +
Sbjct:   139 SVTEGARALIVGGGYIGLEAAAVCAKRGVQVTLVEMADRILQRVAAPETSAYFRALHTGH 198

Query:   127 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 186
             GV   +G  +  L  G+ GRV    L DGS +  D +V+G+G  P  +  E  GL     
Sbjct:   199 GVDIREGVGLTRL-IGAQGRVTGAVLTDGSELPVDLVVVGVGIAPATALAEAAGLVLE-N 256

Query:   187 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY 246
             GI+ D Q RT  P I+A GD A+FP K      R+E V +A   A+   + +  A    Y
Sbjct:   257 GIRTDAQGRTSDPSIWAAGDCASFPYK--GGRIRLESVPNAIDQAETVAQNMQGAGKD-Y 313

Query:   247 DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-ETIEIGNFDPKIATFWIDSGKLKGVLVES 305
                P+F+S   +Y+     V  Q  G N G + +     + +  +FW  +G     +   
Sbjct:   314 VAQPWFWSD--QYD-----VKLQIAGLNTGYDRVVTRPGEGQTVSFWYYTGDQLVAVDAM 366

Query:   306 GSPEEFQLLPTLARSQPFVDKA 327
               P  + +   L  S    D A
Sbjct:   367 NDPRAYMVGKRLIDSGKTADPA 388

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 94/320 (29%), Positives = 152/320 (47%)

Query:     7 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
             V+S+D    T+    G  ++Y  L++ATG +A R P   G    GVHY+R   DA AL S
Sbjct:    83 VSSLDRSAHTVELPDGAAVRYDKLLLATG-SAPRRPPIPGSDAAGVHYLRSYNDAVALNS 141

Query:    67 SLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 126
              L +          +IG+EVAA+A    +D T++      L      ++ + +  L++  
Sbjct:   142 VLVQGSSLAVVGAGWIGLEVAASARQRGVDVTVVETAIQPLLAALGEAVGKVFADLHRDQ 201

Query:   127 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 186
             GV       ++ + A +DG+   +K+ DGST+ AD +++ +GAKP V   ++ GL    G
Sbjct:   202 GVDLRLQTQLEEITA-ADGKATGLKMRDGSTVAADAVLVAVGAKPNVELAQQAGLAMGEG 260

Query:   187 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY 246
             G+ VD   RT  P I+A+GD+AA    +     R EH  +A +        +L  +   Y
Sbjct:   261 GVLVDASLRTSDPDIYAVGDIAAAEHPLLGTRVRTEHWANALKQPAVAAAGMLG-RPGEY 319

Query:   247 DYLPYFYSRVF----EYEG-SPRKVWWQFFGDNVG-ETIEIG-NFDPKI-----ATFWID 294
               LPY ++  +    EY G +P      F G+  G E +    + D ++        W  
Sbjct:   320 AELPYLFTDQYDLGMEYVGHAPSCDRVVFRGNVAGREFLSFWLDGDSRVLAGMNVNVWDV 379

Query:   295 SGKLKGVLVESGSPEEFQLL 314
                +KG L+ SG+P +   L
Sbjct:   380 VDDVKG-LIRSGNPVDVDRL 398

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00017640 F20D6.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 311 (114.5 bits), Expect = 3.1e-27, P = 3.1e-27
 Identities = 92/305 (30%), Positives = 147/305 (48%)

Query:     7 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
             V +++ + + +  ++G+ + Y  LI+ATG    +  +  G  L  + Y+R V +A+ +IS
Sbjct:   220 VIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKL-QVPGSDLKNICYLRKVEEAN-IIS 277

Query:    67 SLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 126
             +L   K        +IGMEVA+A        T+I      L  +F   + +     +++ 
Sbjct:   278 NLHPGKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPLP-VFGSDIGKGIRLKFEEK 336

Query:   127 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSV 185
             GVKF   A++  L     G V+ V LE+G  +D D +V GIG  P     E  G+   + 
Sbjct:   337 GVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGIGVTPATKFLEGSGIKLDNR 396

Query:   186 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQTH 244
             G I+VD +FRT +  IFA+GDV   PL ++D  +  ++H   A+   QH +   +  +  
Sbjct:   397 GFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQTAQAHGQH-LGYTIVGKPQ 455

Query:   245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFW-IDSGKLKGVLV 303
                 +PYF++  F   G       +F G N G T E  N DP+  TF      K K V V
Sbjct:   456 PGPIVPYFWTLFFFAFGL------KFSGCNQGSTKEYTNGDPETGTFIRYFLKKDKVVAV 509

Query:   304 ESGSP 308
              +G P
Sbjct:   510 AAGGP 514

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q19655 F20D6.11 "Protein F20D6.11" [Caenorhabditis elegans (taxid:6239)]

 Score = 311 (114.5 bits), Expect = 3.1e-27, P = 3.1e-27
 Identities = 92/305 (30%), Positives = 147/305 (48%)

Query:     7 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
             V +++ + + +  ++G+ + Y  LI+ATG    +  +  G  L  + Y+R V +A+ +IS
Sbjct:   220 VIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKL-QVPGSDLKNICYLRKVEEAN-IIS 277

Query:    67 SLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 126
             +L   K        +IGMEVA+A        T+I      L  +F   + +     +++ 
Sbjct:   278 NLHPGKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPLP-VFGSDIGKGIRLKFEEK 336

Query:   127 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSV 185
             GVKF   A++  L     G V+ V LE+G  +D D +V GIG  P     E  G+   + 
Sbjct:   337 GVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGIGVTPATKFLEGSGIKLDNR 396

Query:   186 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQTH 244
             G I+VD +FRT +  IFA+GDV   PL ++D  +  ++H   A+   QH +   +  +  
Sbjct:   397 GFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQTAQAHGQH-LGYTIVGKPQ 455

Query:   245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFW-IDSGKLKGVLV 303
                 +PYF++  F   G       +F G N G T E  N DP+  TF      K K V V
Sbjct:   456 PGPIVPYFWTLFFFAFGL------KFSGCNQGSTKEYTNGDPETGTFIRYFLKKDKVVAV 509

Query:   304 ESGSP 308
              +G P
Sbjct:   510 AAGGP 514

GO:0005739 "mitochondrion" evidence=ISS

GO:0051882 "mitochondrial depolarization" evidence=ISS

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=ISS

GO:0008635 "activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

UNIPROTKB|D5IGG6 fdr "Ferredoxin--NAD(P)(+) reductase fdr" [Sphingomonas sp. (taxid:28214)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 78/254 (30%), Positives = 123/254 (48%)

Query:     7 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
             V  +D  ++ +    G+ + YG L+   G +A R  +  G  L GVHY+R  AD DAL +
Sbjct:    84 VERVDPTQRLVFLADGRSMGYGDLVWCAGGSARRL-DCTGHDLGGVHYVRTRADTDALAA 142

Query:    67 SLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 126
              L    K       YIG+E AA    +  + T+I   + +L R+    L++ +E+ ++  
Sbjct:   143 ELPGVSKVVIIGGGYIGLEAAAVMAKFGKNVTLIEALDRVLARVAGEPLSRFFEEKHRSR 202

Query:   127 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 186
             GV       +  L  G DGRV  V+L D   I AD +++GIG  P +SP    G  +S  
Sbjct:   203 GVDVRLRTKVGCL-LGQDGRVTHVELNDADPIPADLVIVGIGIIPAISPLVVAGAKAS-N 260

Query:   187 GIQVDGQFRTRMPGIFAIGDVAAF--PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH 244
             G+ VD   RT +P ++A+GD AA        D   R+E V +A   A    + +      
Sbjct:   261 GLLVDASGRTSIPHVYALGDCAAHVNSFAPNDIPIRLESVQNANDQAVVVARTICGTAAQ 320

Query:   245 TYDYLPYFYSRVFE 258
              Y  +P+F+S  ++
Sbjct:   321 -YHAVPWFWSSQYD 333

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=ISS

GO:0008860 "ferredoxin-NAD+ reductase activity" evidence=ISS

GO:0046232 "carbazole catabolic process" evidence=IDA

GO:0050661 "NADP binding" evidence=ISS

GO:0051287 "NAD binding" evidence=ISS

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92947	MDARP_ARATH	1, ., 6, ., 5, ., 4	0.8208	0.9829	0.7018	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.5.4	0.946
3rd Layer	1.6.5	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002544001 SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (490 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-46
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	2e-34
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	4e-29
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	2e-27
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	1e-25
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	2e-24
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	1e-23
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	2e-23
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	4e-23
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	2e-20
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	2e-20
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	4e-19
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	5e-17
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	1e-15
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-15
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	2e-15
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	3e-15
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	5e-15
TIGR02053	463	TIGR02053, MerA, mercuric reductase	9e-15
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	1e-14
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	3e-14
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	4e-14
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	1e-13
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	4e-13
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	8e-13
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	1e-12
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	1e-12
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-12
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	5e-12
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	1e-11
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	1e-11
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	2e-10
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	2e-10
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	3e-10
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	4e-10
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	2e-09
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	2e-09
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	5e-09
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	6e-09
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	8e-09
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	1e-08
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	3e-08
PLN02507	499	PLN02507, PLN02507, glutathione reductase	4e-08
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	5e-08
PLN02546	558	PLN02546, PLN02546, glutathione reductase	7e-08
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	1e-07
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	2e-07
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	3e-07
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	1e-06
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	1e-06
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-06
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	8e-06
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	8e-06
COG3634	520	COG3634, AhpF, Alkyl hydroperoxide reductase, larg	3e-05
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	7e-05
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	7e-05
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	1e-04
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	1e-04
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	2e-04
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	4e-04
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	0.001
PRK00711	416	PRK00711, PRK00711, D-amino acid dehydrogenase sma	0.002
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	0.003
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	0.004

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  159 bits (403), Expect = 2e-46
 Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 9/216 (4%)

Query: 1   MIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD 57
           ++    V  ID  ++T++      G+ + Y  LI+ATG         I G    V  +R 
Sbjct: 73  VLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATGARPRIPG--IPGV--EVATLRG 128

Query: 58  VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 117
           V D+D ++  LE  K+VVVVGGGYIG+E+AAA      + T++   + LL R      A 
Sbjct: 129 VIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAA 188

Query: 118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 177
             E+L +   +       +  +    DG+V  VKL DG  +DAD +++ IG +P     E
Sbjct: 189 LLEKLEKL-LLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTELLE 247

Query: 178 RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 212
           + G+     G I VD   RT +PGI+A GDVA    
Sbjct: 248 QAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  130 bits (329), Expect = 2e-34
 Identities = 75/259 (28%), Positives = 117/259 (45%), Gaps = 9/259 (3%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
           VTSID E + ++ + G++ +Y  L++ATG      P        GV  +R   DA+AL  
Sbjct: 76  VTSIDPENKVVLLDDGEI-EYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKG 131

Query: 67  SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 126
             E  K VVVVG G IG+E A AA       T+I   + L  +L  P +A+   +L ++ 
Sbjct: 132 GAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKY 191

Query: 127 GVKFVKGASIKNLEAGSDGRVAA-VKLEDGSTIDADTIVIGIGAKPTV--SPFERVGLNS 183
           GV+ + G  +  +E   +  V   V   DG  I AD ++IG G +P V  +     GL  
Sbjct: 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLAL 251

Query: 184 SVGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 242
           + G + VD +  T + P ++A GDVA  P     +  R+     A  + +      ++  
Sbjct: 252 AGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRI-AAENIAGA 310

Query: 243 THTYDYLPYFYSRVFEYEG 261
                 L    S V +   
Sbjct: 311 LRIPGLLGTVISDVGDLCA 329

Length = 415

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score =  117 bits (296), Expect = 4e-29
 Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 14/216 (6%)

Query: 5   DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 64
           + V  ID   + + T++G+ + Y  LI+ATG      P   G  LPGV   R + D +A+
Sbjct: 80  EKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIP-GSDLPGVFVYRTIDDVEAM 138

Query: 65  ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
           +      KK VV+GGG +G+E A       ++ T++     L++R    +  +   +  +
Sbjct: 139 LDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLE 198

Query: 125 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 184
             G+K +   + +  E   + +V  V+  DG+ I AD +V+ +G +P         L   
Sbjct: 199 DLGIKVLLEKNTE--EIVGEDKVEGVRFADGTEIPADLVVMAVGIRP------NDELAKE 250

Query: 185 VG-----GIQVDGQFRTRMPGIFAIGDVAAFPLKMY 215
            G     GI V+   +T  P I+A+G+ A    K+Y
Sbjct: 251 AGLAVNRGIVVNDYMQTSDPDIYAVGECAEHRGKVY 286

Length = 793

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score =  112 bits (283), Expect = 2e-27
 Identities = 56/203 (27%), Positives = 103/203 (50%), Gaps = 4/203 (1%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
           V  ID +++ +IT++G+ L Y  LI+ATG      P   G    GV+  R + D DA+++
Sbjct: 77  VIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIP-GADKKGVYVFRTIEDLDAIMA 135

Query: 67  SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 126
             ++ KK  V+GGG +G+E A       +D ++I     L+ +    +  +  ++  +Q 
Sbjct: 136 MAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQK 195

Query: 127 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 186
           G+ F+       +E     +   ++ +DGS+++AD IV+  G +P        G+  +  
Sbjct: 196 GLTFLLEK--DTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN-R 252

Query: 187 GIQVDGQFRTRMPGIFAIGDVAA 209
           GI V+   +T  P I+A+G+ A 
Sbjct: 253 GIIVNDSMQTSDPDIYAVGECAE 275

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score =  105 bits (265), Expect = 1e-25
 Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 13/210 (6%)

Query: 7   VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           V  ++ E+QT++     TN      Y  LI++ G +    P   G  L  V  +R++ D 
Sbjct: 67  VIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-PNIEGINLDIVFTLRNLEDT 125

Query: 62  DALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 119
           DA+   ++  K + VV++GGGYIG+E+A A      + T+I     +L +LF   + Q  
Sbjct: 126 DAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIV 185

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 179
           E+  +++ +       + ++E    G         G    AD +++  G KP     +  
Sbjct: 186 EEELKKHEINLRLNEEVDSIE----GEERVKVFTSGGVYQADMVILATGIKPNSELAKDS 241

Query: 180 GLNSSV-GGIQVDGQFRTRMPGIFAIGDVA 208
           GL     G I V+ +F+T +P I+A GDVA
Sbjct: 242 GLKLGETGAIWVNEKFQTSVPNIYAAGDVA 271

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score =  102 bits (255), Expect = 2e-24
 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 11/206 (5%)

Query: 6   PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYLPGVHYIRDVADADA 63
            + ++  + + L+  +G+   +  L +ATG  A   P  + +G        +R   DA  
Sbjct: 80  TIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALG---ERCFTLRHAGDAAR 136

Query: 64  LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY-EQL 122
           L   L+  + VV+VG G IG+E+AA+A   +   T+I     ++ R   P   QRY  Q 
Sbjct: 137 LREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN-APPPVQRYLLQR 195

Query: 123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 182
           +QQ GV+ +   +I   E   DG    + L+ G T+ AD ++ GIG            L+
Sbjct: 196 HQQAGVRILLNNAI---EHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLD 252

Query: 183 SSVGGIQVDGQFRTRMPGIFAIGDVA 208
           ++  GI +D   RT  P IFA GDVA
Sbjct: 253 TA-NGIVIDEACRTCDPAIFAGGDVA 277

Length = 396

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  100 bits (252), Expect = 1e-23
 Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 11/197 (5%)

Query: 19  TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG 78
               + +   ++I+ATG +  R P   G  + G   +    D+   +  LE  K +V+VG
Sbjct: 128 GEDKETITADNIIIATG-SRPRIPPGPG--IDGARIL----DSSDALFLLELPKSLVIVG 180

Query: 79  GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN 138
           GGYIG+E A+         T++   + +L     P +++   +  ++ GVK +    +  
Sbjct: 181 GGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKGGVKILLNTKVTA 239

Query: 139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 195
           +E   DG +  ++  +G TI+AD +++ IG KP       E  G+     G I+VD Q  
Sbjct: 240 VEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMT 299

Query: 196 TRMPGIFAIGDVAAFPL 212
           T +PGI+AIGDV   P+
Sbjct: 300 TNVPGIYAIGDVIGGPM 316

Length = 454

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 99.6 bits (249), Expect = 2e-23
 Identities = 58/246 (23%), Positives = 94/246 (38%), Gaps = 52/246 (21%)

Query: 2   IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV----HYIRD 57
             Q  VT ID + + +       + Y  L+VA G   + F       +PG       ++ 
Sbjct: 75  FVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFG------IPGAAEYAFGLKT 128

Query: 58  VADADA----LISSLEKAKK---------VVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104
           + DA      L+ + EKA +         +V+VGGG  G+E+A             F  +
Sbjct: 129 LEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVD 188

Query: 105 ------HLLQRL------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 152
                  L++        F P L++  E+  ++ GV+ + G  +  +          V L
Sbjct: 189 PSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTL 242

Query: 153 EDG-STIDADTIVIGIGAKP-----TVSPFERVGLNSSVGGIQVDGQFR-TRMPGIFAIG 205
           +DG   I ADT+V   G +       +S  E        G + V+   +    P IFA G
Sbjct: 243 KDGEEEIPADTVVWAAGVRASPLLKDLSGLE----TDRRGRLVVNPTLQVPGHPDIFAAG 298

Query: 206 DVAAFP 211
           D AA  
Sbjct: 299 DCAAVI 304

Length = 405

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 10/197 (5%)

Query: 19  TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG 78
            N  + L+  ++I+ATG      P    G       +  V  +   ++  E  + +V++G
Sbjct: 124 ENGEETLEAKNIIIATGSRPRSLP----GPFDFDGKV--VITSTGALNLEEVPESLVIIG 177

Query: 79  GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN 138
           GG IG+E A+         T+I   + +L       +++  ++  ++ GVK +    +  
Sbjct: 178 GGVIGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTA 236

Query: 139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 195
           +E   D      K  +  T+  + +++ +G KP       E++G+     G I VD   R
Sbjct: 237 VEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMR 296

Query: 196 TRMPGIFAIGDVAAFPL 212
           T +PGI+AIGDV   P+
Sbjct: 297 TNVPGIYAIGDVIGGPM 313

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 12/210 (5%)

Query: 7   VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           V  +D + +T+      T S     Y  L++ATG      P      L  V+ ++ + D 
Sbjct: 79  VVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR-PIIPPIKNINLENVYTLKSMEDG 137

Query: 62  DALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 119
            AL   L  E+ K +V++G G+IG+E   AA     +  II  E+ +L   F   +    
Sbjct: 138 LALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVM 197

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 179
           E+  ++NGV+      +K+L    + +V  V   D    +AD +++  G KP     E  
Sbjct: 198 EEELRENGVELHLNEFVKSLIG--EDKVEGVV-TDKGEYEADVVIVATGVKPNTEFLEDT 254

Query: 180 GLNS-SVGGIQVDGQFRTRMPGIFAIGDVA 208
           GL +   G I VD    T +  I+A GD A
Sbjct: 255 GLKTLKNGAIIVDEYGETSIENIYAAGDCA 284

Length = 444

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 90.7 bits (226), Expect = 2e-20
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 13/206 (6%)

Query: 6   PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI 65
            VT ID E Q + +  G   +Y  L++ATG +A   P      +  ++  ++   A+  +
Sbjct: 80  WVTDIDAEAQVVKSQ-GNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQL 138

Query: 66  SSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 123
                A++V+VVGGG IG E+A      G  +  T++     LL  L  P ++ R +   
Sbjct: 139 RD---AQRVLVVGGGLIGTELAMDLCRAGKAV--TLVDNAASLLASLMPPEVSSRLQHRL 193

Query: 124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 183
            + GV  +  + ++ LE    G      L+ G +I+ D ++   G +P  +   R GL  
Sbjct: 194 TEMGVHLLLKSQLQGLEKTDSGIR--ATLDSGRSIEVDAVIAAAGLRPNTALARRAGL-- 249

Query: 184 SVG-GIQVDGQFRTRMPGIFAIGDVA 208
           +V  GI VD   +T  P I+A+GD A
Sbjct: 250 AVNRGIVVDSYLQTSAPDIYALGDCA 275

Length = 377

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 87.5 bits (218), Expect = 4e-19
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
           K+V VVG GYI +E A    G   +T +         R F P + +   +  ++ G++  
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFV-RGDAPLRGFDPDIRETLVEEMEKKGIRLH 226

Query: 132 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 187
             A  K +E  +DG +  + LEDG T+  D ++  IG +P       E  G  LN   G 
Sbjct: 227 TNAVPKAVEKNADGSLT-LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEK-GY 284

Query: 188 IQVDGQFRTRMPGIFAIGDV 207
           I VD    T +PGI+A+GDV
Sbjct: 285 IIVDEYQNTNVPGIYAVGDV 304

Length = 450

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 81.5 bits (202), Expect = 5e-17
 Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 14/184 (7%)

Query: 30  LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVAA 88
           L++ATG   SR P ++ G      Y+  ++  +AL  SLE   K +V+VGGG IG+E A+
Sbjct: 146 LLIATG---SR-PVELPGLPFDGEYV--ISSDEAL--SLETLPKSLVIVGGGVIGLEWAS 197

Query: 89  AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 148
               + ++ T++   + +L       L++   +L ++ GV+ V GA +  L    DG V 
Sbjct: 198 MLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVL 256

Query: 149 AVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAI 204
            V   +G   T++AD +++ +G +P       E   ++   G IQ+D   +T+   I+AI
Sbjct: 257 IVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAI 316

Query: 205 GDVA 208
           GDV 
Sbjct: 317 GDVI 320

Length = 472

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 55/221 (24%), Positives = 87/221 (39%), Gaps = 27/221 (12%)

Query: 2   IYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----GVHYIR 56
           I +D V  +++E     +       +  ++I+ATG  A      + G       GV Y  
Sbjct: 78  IVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGKGVSY-- 133

Query: 57  DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 116
             A  D       K K VVV+GGG   +E A          T++   +      F     
Sbjct: 134 -CATCDGF----FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE-----FRAEEI 183

Query: 117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPT 172
              E+L +   ++ +    +K +  G D  V  V L++       +  D + I IG  P 
Sbjct: 184 LV-ERLKKNVKIEVLTNTVVKEIL-GDD--VEGVVLKNVKGEEKELPVDGVFIAIGHLPN 239

Query: 173 VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
               + +G+    G I VD +  T +PGIFA GDVA    +
Sbjct: 240 TELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNGR 280

Length = 305

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 22/196 (11%)

Query: 21  SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-----DVADADALISSLEKAKKVV 75
            G+ L+   + + TG  A+  P      +PG+  +       +   D L   L      V
Sbjct: 128 GGETLRAKRIFINTGARAAI-PP-----IPGLDEVGYLTNETIFSLDELPEHL------V 175

Query: 76  VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 135
           ++GGGYIG+E A     +  + T+I     LL R     +A    ++ ++ G+     A 
Sbjct: 176 IIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAE 234

Query: 136 IKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVD 191
              +E   DG    +    G+  I    I++ +G  P       E  G+   + G I+VD
Sbjct: 235 CIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD 294

Query: 192 GQFRTRMPGIFAIGDV 207
            Q RT  PGI+A GD 
Sbjct: 295 DQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 76.7 bits (190), Expect = 2e-15
 Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 27/204 (13%)

Query: 19  TNSGKLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADAD-ALISSLEKA-KKVV 75
            +  +     ++I+ATG      P  +I G        R +  +D AL  +L++  K +V
Sbjct: 127 EDGEQTYTAKNIILATGSRPRELPGIEIDG--------RVIWTSDEAL--NLDEVPKSLV 176

Query: 76  VVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 132
           V+GGGYIG+E A+A   +     + TI+     +L       +++  E+  ++ G+K   
Sbjct: 177 VIGGGYIGVEFASA---YASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKIKT 232

Query: 133 GASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVGG 187
           GA  K +E   DG    V LEDG    T++AD +++ +G +P       E +G+ +  G 
Sbjct: 233 GAKAKKVEQTDDG--VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGF 290

Query: 188 IQVDGQFRTRMPGIFAIGDVAAFP 211
           I+VD Q RT +P I+AIGD+   P
Sbjct: 291 IEVDEQLRTNVPNIYAIGDIVGGP 314

Length = 462

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 69.5 bits (171), Expect = 3e-15
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 73  KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 132
           +VVVVGGGYIG+E A+A        T++   + LL R F   +A+  ++  ++NG++ + 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59

Query: 133 GASIKNLEAGSDGRVAAVKLEDG 155
             +++ +E   DG V  +K  DG
Sbjct: 60  NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 75.6 bits (186), Expect = 5e-15
 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 23/219 (10%)

Query: 2   IYQDPVTSIDIE---------KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV 52
           IYQ  +    ++         K   +  +G+      +++ATG   S FPE I G   G 
Sbjct: 96  IYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPS-FPENIPGAELGT 154

Query: 53  HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT 112
                  D+D   +  E  K+VV+VG GYI +E+A    G   +T ++     +L R F 
Sbjct: 155 -------DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFD 206

Query: 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKP 171
             +++   + Y++ G+   K +    +E   +G++  +  EDG +I D D ++  IG KP
Sbjct: 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRKP 265

Query: 172 TVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 207
                  E VG+  +  G I VD    T +PGI+A+GDV
Sbjct: 266 NTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 74.8 bits (184), Expect = 9e-15
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 12/181 (6%)

Query: 31  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 90
           ++ATG   +  P      +PG+        ++  ++     + + V+GGG IG+E+A A 
Sbjct: 133 LIATGARPAIPP------IPGLKEA-GYLTSEEALALDRIPESLAVIGGGAIGVELAQAF 185

Query: 91  VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 150
                + TI+   + LL R   P ++   E+   + G++ V  A +K +     G++  V
Sbjct: 186 ARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITV 244

Query: 151 KLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGD 206
           +   G   ++AD +++  G +P       E+ G+     GGI VD   RT  PGI+A GD
Sbjct: 245 EKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGD 304

Query: 207 V 207
           V
Sbjct: 305 V 305

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 28/200 (14%)

Query: 22  GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 81
            + + + + I+ATG +           LPG     +V   +  I S E  K +V+ G G 
Sbjct: 131 TETVTFDNAIIATGSSTR--------LLPGTSLSENVVTYEEQILSRELPKSIVIAGAGA 182

Query: 82  IGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------TPSLAQRYEQLYQQNGVKFVKGA 134
           IGME A     + +D TI+      L R         +  +A++Y++L    GVK + G 
Sbjct: 183 IGMEFAYVLKNYGVDVTIV----EFLDRALPNEDAEVSKEIAKQYKKL----GVKILTGT 234

Query: 135 SIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQ 189
            +++++         V  +DG    ++AD ++  IG  P V  +  E+ G+  +  G I 
Sbjct: 235 KVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIA 294

Query: 190 VDGQFRTRMPGIFAIGDVAA 209
           +D   RT +P I+AIGDV A
Sbjct: 295 IDDYMRTNVPHIYAIGDVTA 314

Length = 466

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 73.5 bits (180), Expect = 3e-14
 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 15/204 (7%)

Query: 5   DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 64
           D VT +      L  + G++++  ++++A G      P       P V        +D  
Sbjct: 183 DEVTIVSAGVSQL--DDGQVIEGKNILIAVGNK----PI-----FPDVKGKEFTISSDDF 231

Query: 65  ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
              +++AK++ + G GYI +E+         ++  IF   + L R F  ++    E   +
Sbjct: 232 FK-IKEAKRIGIAGSGYIAVELINVVNRLGAESY-IFARGNRLLRKFDETIINELENDMK 289

Query: 125 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-- 182
           +N +  +  A+++ +E   +  +     +       D ++  +G  P         LN  
Sbjct: 290 KNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK 349

Query: 183 SSVGGIQVDGQFRTRMPGIFAIGD 206
           +  G I+VD   RT +  I+A+GD
Sbjct: 350 TPKGYIKVDDNQRTSVKHIYAVGD 373

Length = 561

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 72.5 bits (178), Expect = 4e-14
 Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 21/211 (9%)

Query: 7   VTSIDIEKQTL-----ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           V +I+ E+QT+      TN      Y  LI++ G +A+    +          +R++ D 
Sbjct: 81  VIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFES----DITFTLRNLEDT 136

Query: 62  DALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 119
           DA+   ++  +  K +VVG GYI +EV        L  T+I   + +  +L    + Q  
Sbjct: 137 DAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN-KLMDADMNQPI 195

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE-- 177
                +  + +     I  +    +G    V  + G     D I+ G+G  P     E  
Sbjct: 196 LDELDKREIPYRLNEEIDAI----NGN--EVTFKSGKVEHYDMIIEGVGTHPNSKFIESS 249

Query: 178 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 208
            + L+   G I V+ +F T +P I+AIGD+ 
Sbjct: 250 NIKLDDK-GFIPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 26/222 (11%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
             +I+ +++ + +++G+ + Y  LI+ATG      P K G         R + D +A+ +
Sbjct: 82  AITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQDCFVYRTIEDLNAIEA 140

Query: 67  SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 126
              ++K+  VVGGG +G+E A A     ++T +I          F P L    EQL Q  
Sbjct: 141 CARRSKRGAVVGGGLLGLEAAGALKNLGVETHVI---------EFAPMLMA--EQLDQMG 189

Query: 127 GVKF--------VKGASIKN----LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174
           G +         V+  + KN    ++ G + R   ++  DGS ++ D IV   G +P   
Sbjct: 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEAR-KTMRFADGSELEVDFIVFSTGIRPQDK 248

Query: 175 PFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 215
              + GL  +  GGI ++   +T  P I+AIG+ A++  +++
Sbjct: 249 LATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF 290

Length = 847

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 69.4 bits (171), Expect = 4e-13
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 16/162 (9%)

Query: 58  VADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRL---FT 112
           + D+D+++S     + +++ G G IG E A+  AA+G K   T+I   + LL  L    +
Sbjct: 162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVK--VTLINTRDRLLSFLDDEIS 219

Query: 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172
            +L+         +GV       ++ +E G DG +  V L+ G  I AD ++   G    
Sbjct: 220 DALSYHLRD----SGVTIRHNEEVEKVEGGDDGVI--VHLKSGKKIKADCLLYANGRTGN 273

Query: 173 VSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 211
                 E  GL   S G ++V+  ++T +P I+A+GDV  FP
Sbjct: 274 TDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP 315

Length = 461

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 68.7 bits (169), Expect = 8e-13
 Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 34/199 (17%)

Query: 29  SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYI 82
           ++++ATG   SR P      +PGV     +   D L++S     L+K  K + V+GGG I
Sbjct: 133 NIVIATG---SRVPP-----IPGV----WLILGDRLLTSDDAFELDKLPKSLAVIGGGVI 180

Query: 83  GMEVAAA--AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 140
           G+E+  A   +G  +  T+    + +L  L  P ++++ +++  +   K   GA + ++E
Sbjct: 181 GLELGQALSRLG--VKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE 236

Query: 141 AGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQ 193
              D +V  ++    + TI+AD +++  G +P     + +GL N+ +     G   VD  
Sbjct: 237 KSGDEKVEELEKGGKTETIEADYVLVATGRRPNT---DGLGLENTGIELDERGRPVVDEH 293

Query: 194 FRTRMPGIFAIGDVAAFPL 212
            +T +PGI+A GDV   P 
Sbjct: 294 TQTSVPGIYAAGDVNGKPP 312

Length = 460

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 23/187 (12%)

Query: 29  SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 88
           ++++ TG  ++  P      +PG+   + V D+  + S     +++ ++GGG IG+E A 
Sbjct: 121 TIVINTGAVSNVLP------IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAG 174

Query: 89  --AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 146
               +G K+  T++   + +L R   PS+A   +Q  +++G+ F+  A    ++   DG 
Sbjct: 175 LYNKLGSKV--TVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKN--DGD 229

Query: 147 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQFRTRMPG 200
              V  ED  T   D ++   G KP   P   +GL N+ +     G I+VD   +T +PG
Sbjct: 230 QVLVVTEDE-TYRFDALLYATGRKPNTEP---LGLENTDIELTERGAIKVDDYCQTSVPG 285

Query: 201 IFAIGDV 207
           +FA+GDV
Sbjct: 286 VFAVGDV 292

Length = 438

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 42/222 (18%)

Query: 46  GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV--GWKLDTTII--F 101
            G L  V ++R V + +         K+VVV+GGG   M+ A  A   G + + TI+   
Sbjct: 246 AGVLDAVDFLRAVGEGEPPFLG----KRVVVIGGGNTAMDAARTARRLGAE-EVTIVYRR 300

Query: 102 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA--------VKLE 153
               +      P+  +  E+   + GV+     +   +E   +G               E
Sbjct: 301 TREDM------PAHDEEIEEA-LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDE 353

Query: 154 DG---------STIDADTIVIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFR-TRMPGIF 202
           DG          T++AD +V+ IG     +  E V G+    G +QVD  F  T  PG+F
Sbjct: 354 DGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVF 413

Query: 203 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH 244
           A GD+   P     RT     + H +++A++ I A L  + +
Sbjct: 414 AGGDMVPGP-----RTVTTA-IGHGKKAARN-IDAFLGGEPY 448

Length = 564

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
           K +++ GGGYI +E A    G  + TT+I+    +L+  F   + +      ++ G++ +
Sbjct: 167 KSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRG-FDDDMRRGLAAALEERGIRIL 225

Query: 132 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGGI 188
              SI ++    DGR+ A  L     I AD ++   G  P  +    E  G+  + +G I
Sbjct: 226 PEDSITSISKDDDGRLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAI 284

Query: 189 QVDGQFRTRMPGIFAIGDV 207
            VD   RT  P I+A+GDV
Sbjct: 285 AVDEYSRTSTPSIYAVGDV 303

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 66.5 bits (162), Expect = 5e-12
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 69  EKAKKVVVVGGGYIGMEVAA-----AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 123
           E  ++V+ VGGG+I +E A         G K+        N+++ R F  +L +   +  
Sbjct: 185 EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCY---RNNMILRGFDSTLRKELTKQL 241

Query: 124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE--RVGL 181
           + NG+  +   +   +   +DG    V  E G T+D D +++ IG  P     +  +VG+
Sbjct: 242 RANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGV 300

Query: 182 N-SSVGGIQVDGQFRTRMPGIFAIGDV 207
             +  G IQVD   RT +P I+AIGDV
Sbjct: 301 ELTKKGAIQVDEFSRTNVPNIYAIGDV 327

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 21/191 (10%)

Query: 31  IVATGCTASRFPEKIGGYLPGVHY-IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 89
           I+ATG            +LPGV +  + + D    ++  E  KK+ V+G G IG+E+ + 
Sbjct: 150 IIATGSEPR--------HLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSV 201

Query: 90  AVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 146
              W+    + TI+      L       +A+   + + + G+    G  I  ++ G  G 
Sbjct: 202 ---WRRLGAEVTILEALPAFLA-AADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGV 257

Query: 147 VAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGI 201
             A    DG   T++ D +++ IG  P       E VGL     G I VD   RT +P +
Sbjct: 258 SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNV 317

Query: 202 FAIGDVAAFPL 212
           +AIGDV   P+
Sbjct: 318 YAIGDVVRGPM 328

Length = 475

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 40/213 (18%)

Query: 26  KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKAKKVVVVGGGY 81
            Y ++ + TG    RF    G  L GV+    ++  V  A A    L   K+VVV+GGG 
Sbjct: 225 GYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD-YDLPVGKRVVVIGGGN 283

Query: 82  IGMEVAAAAVGWKL---DTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIK 137
             M+ A  A   +L     TI++      +R      A   E  + ++ GV+F   A+  
Sbjct: 284 TAMDAARTAK--RLGAESVTIVY------RRGREEMPASEEEVEHAKEEGVEFEWLAAPV 335

Query: 138 NLEAGSDGRVAAVKLE-----------------DGS--TIDADTIVIGIGAKP---TVSP 175
            +  G +GRV  V+                   +GS  T+ AD ++  IG  P    +S 
Sbjct: 336 EIL-GDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILST 394

Query: 176 FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 208
              + LN     I  D   RT +PG+FA GD+ 
Sbjct: 395 TPGLELNRWGTIIADDETGRTSLPGVFAGGDIV 427

Length = 457

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 15/182 (8%)

Query: 30  LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK-KVVVVGGGYIGMEVAA 88
           +++ATG   S  PE +    PG       +D    I SL K   K ++VG  YIG+E A 
Sbjct: 148 ILIATGGRPS-IPEDV----PGAKEYSITSDD---IFSLSKDPGKTLIVGASYIGLETAG 199

Query: 89  AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 148
                  D T+      +  R F    +++  +  ++ G  F++G    N+E   D    
Sbjct: 200 FLNELGFDVTVAV--RSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDK--I 255

Query: 149 AVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 206
            V   DG+T   DT++   G KP +       +G++ +     +     T +P IFA+GD
Sbjct: 256 KVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNIPNIFAVGD 315

Query: 207 VA 208
           V 
Sbjct: 316 VV 317

Length = 499

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 67/221 (30%), Positives = 95/221 (42%), Gaps = 41/221 (18%)

Query: 26  KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKA-----KKVVV 76
           KY ++++ATG   SR     G  LPGV+    Y+  +  A       EK      KKVVV
Sbjct: 118 KYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVV 177

Query: 77  VGGGYIGMEVA--AAAVGWKLDT-----TI------IFPENHLLQR------LFTPSLAQ 117
           VG G   ++ A  A  +G +        TI       +    L+ R      L TP    
Sbjct: 178 VGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTP---- 233

Query: 118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSP 175
              ++  +  V+ V+ A ++  E    GR   V +  GS   ++ADT+V  IG  PT  P
Sbjct: 234 --VRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIP-GSEFVLEADTVVFAIGEIPT-PP 289

Query: 176 FERVGL---NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
           F +  L    +  G I VD +  T   G+FA GDV   P K
Sbjct: 290 FAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSK 330

Length = 352

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 15/184 (8%)

Query: 30  LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 89
            ++ATG    R+P   G     +        +D L S      K +VVG  Y+ +E A  
Sbjct: 147 FLIATGERP-RYPGIPGAKELCI-------TSDDLFSLPYCPGKTLVVGASYVALECAGF 198

Query: 90  AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVA 148
             G  LD T++     +L R F    A +  +  +++GVKF +      +E   +   V 
Sbjct: 199 LAGIGLDVTVMV--RSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVLVE 256

Query: 149 AVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGL--NSSVGGIQVDGQFRTRMPGIFAI 204
                +G   + DT+++ IG          E VG+  N   G I  D + +T +P I+A+
Sbjct: 257 FTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAV 316

Query: 205 GDVA 208
           GD+ 
Sbjct: 317 GDIL 320

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 56/229 (24%), Positives = 88/229 (38%), Gaps = 34/229 (14%)

Query: 2   IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT----------ASRFPEK-IGGYLP 50
                 T ID +++ ++  +   L Y  L +  G T              P K I  +L 
Sbjct: 71  FVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLA 130

Query: 51  GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA-AAAVGWK----LDTTIIFPENH 105
               + + ADA          K++ VVGGG  G+E+A A               +     
Sbjct: 131 RWEALLESADAP------PGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGAS 184

Query: 106 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165
           LL   F   + +   +L  + G++  +GA +     G DG +    L DG T+ AD I+ 
Sbjct: 185 LLPG-FPAKVRRLVLRLLARRGIEVHEGAPV---TRGPDGALI---LADGRTLPADAILW 237

Query: 166 GIGAKPTVSP-FERVGLN-SSVGGIQVDGQFRTR-MPGIFAIGDVAAFP 211
             GA+    P     GL     G ++VD   ++   P +FA GD A   
Sbjct: 238 ATGARA--PPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVIT 284

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 34/235 (14%)

Query: 16  TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 75
           TL T  G+ +    +++A G +    P  I       H    +     L  SL      V
Sbjct: 118 TLRTGDGEEITADQVVIAAG-SRPVIPPVIADSGVRYHTSDTIMRLPELPESL------V 170

Query: 76  VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------FTPSLAQRYEQLYQQNGV 128
           +VGGG+I  E A       +  T++     LL+ L       FT   ++R++    +N  
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRN-- 228

Query: 129 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVG 186
             V G S        DG    ++L+DGST++AD +++  G  P          G++    
Sbjct: 229 --VVGVS-------QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDED 279

Query: 187 G-IQVDGQFRTRMPGIFAIGDVAA-FPLK-MYDRTAR-VEH---VDHARQSAQHC 234
           G + VD   RT   G+FA+GDV++ + LK + +  AR V+H         ++ H 
Sbjct: 280 GRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHR 334

Length = 451

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 49/219 (22%)

Query: 26  KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--------------SSLEKA 71
           +Y ++ + TG    +        +PG       +  D L               + +   
Sbjct: 218 QYDAVFIGTGAGLPKL-----MNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAG 272

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ--QNGVK 129
           K VVV+GGG   ++ A  A+    +   ++       R     +  R E++    + GVK
Sbjct: 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLY-------RRTREDMTARVEEIAHAEEEGVK 325

Query: 130 F----------------VKGASIKNLEAG----SDGRVAAVKLEDGSTIDADTIVIGIGA 169
           F                V+    + ++      S  R      +    ++AD +++ IG 
Sbjct: 326 FHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385

Query: 170 KPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDV 207
                  E   L +S  G I VD   RT +PG+FA GD+
Sbjct: 386 GSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 15/174 (8%)

Query: 49  LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107
           LPGV    + + D+   +S  E  K +VV+G G IG+E+ +         T++      L
Sbjct: 151 LPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVV----EYL 206

Query: 108 QRLFTPSL----AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDA 160
            R+  P      A+  ++   + G+KF  G+ +    AG+DG    ++   G    T+ A
Sbjct: 207 DRI-CPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQA 265

Query: 161 DTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 212
           D +++ IG +P       E VGL +   G+  +   RT +PG++ IGDV + P+
Sbjct: 266 DYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPM 319

Length = 466

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 67  SLEK-AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 125
           SL      +++VGGG IG E A+         TI+     LL       +A    +  + 
Sbjct: 165 SLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-DEDIAHILREKLEN 223

Query: 126 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGLN 182
           +GVK   GA++K L   S  + A  + E     ++A+ +++ +G KP V     E+ G+ 
Sbjct: 224 DGVKIFTGAALKGLN--SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQ 281

Query: 183 SSVGGIQVDGQFRTRMPGIFAIGDVA 208
            S  GI V+   +T +P I+A GDV 
Sbjct: 282 FSNKGISVNEHMQTNVPHIYACGDVI 307

Length = 458

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 15/202 (7%)

Query: 16  TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 75
           TL T  G+ +    +++A G +    P  I     GV Y  +    + ++   E  + +V
Sbjct: 121 TLRTGDGEEITGDQIVIAAG-SRPYIPPAIAD--SGVRYHTN----EDIMRLPELPESLV 173

Query: 76  VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 135
           +VGGGYI  E A          TI+     LL+ L    ++ R+ ++ ++   K+     
Sbjct: 174 IVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHL-DEDISDRFTEIAKK---KWDIRLG 229

Query: 136 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDG 192
                   DG    + L+DGST+ AD +++  G  P       E  G+     G I+VD 
Sbjct: 230 RNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE 289

Query: 193 QFRTRMPGIFAIGDVAA-FPLK 213
             RT   G++A+GDV++ + LK
Sbjct: 290 YGRTSARGVWALGDVSSPYQLK 311

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 49  LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108
           +PG+     V D+  L++  E    + ++GGGYIG+E A+    +    TI+   +  L 
Sbjct: 136 IPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195

Query: 109 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168
           R     +A     + +  GV  +  A ++ + +  + +V          +DA  ++I  G
Sbjct: 196 RE-DRDIADNIATILRDQGVDIILNAHVERI-SHHENQVQVHSEHAQLAVDA--LLIASG 251

Query: 169 AKPTVSPFERVGLNSSV---GGIQVDGQFRTRMPGIFAIGDV 207
            +P  +         +V   G I VD    T    I+A+GDV
Sbjct: 252 RQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDV 293

Length = 441

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 36/227 (15%)

Query: 2   IYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP--------G 51
           IY++ V  +D   +   + T  GK     ++I+ATG  AS    K+G  +P        G
Sbjct: 74  IYEE-VIKVDKSGRPFKVYTGDGKEYTAKAVIIATG--AS--ARKLG--IPGEDEFWGRG 126

Query: 52  VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF 111
           V Y    A  D       K K+V VVGGG   +E A          T++    H   +  
Sbjct: 127 VSY---CATCDG---PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLV----HRRDKFR 176

Query: 112 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIG 166
              +    ++L +   ++F+  +++K  E   D +V  VK+++        ++ D + I 
Sbjct: 177 AEKILL--DRLKKNPKIEFLWNSTVK--EIVGDNKVEGVKIKNTVTGEEEELEVDGVFIA 232

Query: 167 IGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
           IG +P     + +      G I  D   RT +PG+FA GDV     +
Sbjct: 233 IGHEPNTELLKGLLELDENGYIVTDEGMRTSVPGVFAAGDVRDKGYR 279

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 23/194 (11%)

Query: 22  GKLLKYGS--LIVATGCTASRFPEKIGGYLPGVHYIRDVA-DADALISSLEKAKKVVVVG 78
           G  L+Y +  +++ATG  A R        +PG    +++A  +D  +S  E  K+ VV+G
Sbjct: 161 GTKLRYTAKHILIATGSRAQRPN------IPG----KELAITSDEALSLEELPKRAVVLG 210

Query: 79  GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136
           GGYI +E A+    +G  +D   +F    L  R F   +     +  +  G+      ++
Sbjct: 211 GGYIAVEFASIWRGMGATVD---LFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNL 267

Query: 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGGIQVDGQ 193
             L     G    V  + G    AD ++   G  P       E VG+     G ++VD  
Sbjct: 268 TQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEY 325

Query: 194 FRTRMPGIFAIGDV 207
            RT +P I+AIGDV
Sbjct: 326 SRTNIPSIWAIGDV 339

Length = 499

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 44/228 (19%)

Query: 7   VTSIDIEKQ----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG-VHYI-RDVAD 60
             +  IE +     +   SG++LK  S+IVATG   +R+  K+G  +PG   YI + VA 
Sbjct: 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATG---ARW-RKLG--VPGEKEYIGKGVAY 341

Query: 61  ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
                    K K V V+GGG  G+E A       +D   I     +L+  F   L  + +
Sbjct: 342 CPHCDGPFFKGKDVAVIGGGNSGIEAA-------IDLAGIVRHVTVLE--FADEL--KAD 390

Query: 121 QLYQQNGVKFVKGASIKNLE----------AGSDGRVAAVKLEDGST-----IDADTIVI 165
           ++ Q       K  S+ N++           G   +V  ++ +D ++     +D D + +
Sbjct: 391 KVLQD------KLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV 444

Query: 166 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
            IG  P     +     +  G I +D + RT +PGIFA GDV   P K
Sbjct: 445 QIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYK 492

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 22  GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 81
           GKL    ++++A G      P+     +PG+ +     D+DA +    K +K+ +VGGGY
Sbjct: 212 GKLYTARNILIAVGGRPF-IPD-----IPGIEH---AIDSDAALDLPSKPEKIAIVGGGY 262

Query: 82  IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141
           I +E A    G K D  +   +  +L R F   +     +     G++F    S + +  
Sbjct: 263 IALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIK 321

Query: 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQFRTRM 198
            +DG + ++K   G+      ++   G KP       E VG+     G I+VD   RT +
Sbjct: 322 SADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSV 380

Query: 199 PGIFAIGDV 207
           P I+A+GDV
Sbjct: 381 PSIWAVGDV 389

Length = 558

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 64/267 (23%), Positives = 105/267 (39%), Gaps = 63/267 (23%)

Query: 3   YQDPVTSIDIE-KQTLITNSGK---------LLKYGSLIVATGCTASRFPEKIGGYLPGV 52
            +  V  +D E K+       K          + Y  L+VA G   + F   I G     
Sbjct: 80  LRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF--NIPGVEERA 137

Query: 53  HYIRDVADADAL--------------ISSLEKAKK---VVVVGGGYIGMEVAAA-AVGWK 94
            ++++V  A  +               +S+E+ K+    VVVGGG  G+E AA  A  ++
Sbjct: 138 FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFR 197

Query: 95  LDTTIIFPENHLLQRL--------------FTPSLAQRYEQL-YQQNGVKFVKGASIKNL 139
            D   + PE  L++                F  +L ++Y Q   ++ GV      ++K +
Sbjct: 198 DDVRNLNPE--LVEECKVTVLEAGSEVLGSFDQAL-RKYGQRRLRRLGVDIRTKTAVKEV 254

Query: 140 EAGSDGRVAAVKLEDGSTIDADTIV--IGIGAKPTV--SPFERVGLNSSVGGIQVDGQFR 195
                     V L+DG  I    +V   G+G  P       ++    +S G I VD   R
Sbjct: 255 LDKE------VVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDK----TSRGRISVDDHLR 304

Query: 196 TR-MPGIFAIGDVAAFPLKMYDRTARV 221
            + +P +FA+GD AA   +     A+V
Sbjct: 305 VKPIPNVFALGDCAANEERPLPTLAQV 331

Length = 424

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 41/220 (18%)

Query: 23  KLLK-YGSLIVATGCTASR---FPEKIGGYLPGVHY--------IRDVADADALISSLEK 70
           +LL  Y ++ + TG    R    P   G  L GVH+         R V   +       K
Sbjct: 224 ELLAEYDAVFLGTGAYKPRDLGIP---GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAK 280

Query: 71  AKKVVVVGGGYIGMEVAAAAV--GWK----LDTTIIFPENHLLQRLFTPSLAQRYEQLY- 123
            K VVV+GGG  GM+    A+  G K     D   + P     +    P    + E    
Sbjct: 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN-KNNPWPYWPMKLEVSNA 339

Query: 124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLED------------GS--TIDADTIVIGIGA 169
            + GV+       K  E G +G+V  VK+              GS   + AD +++ +G 
Sbjct: 340 HEEGVEREFNVQTKEFE-GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398

Query: 170 KPTVSP-FERVGLNSSVGG--IQVDGQFRTRMPGIFAIGD 206
               +    + G+     G     D  ++T  P +FA GD
Sbjct: 399 TGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438

Length = 471

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 32/146 (21%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
           ++++V+G   + +E+A A        T++     L Q    P++ +  E  +++ G++ +
Sbjct: 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQE--DPAVGEAIEAAFRREGIEVL 236

Query: 132 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQ 189
           K      ++   +GR   ++   G T+ A+ +++  G  P       E +G+ +  G I+
Sbjct: 237 KQTQASEVD--YNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIR 293

Query: 190 VDGQFRTRMPGIFAIGDVAAFPLKMY 215
           +D   +T + GI+A GD    P  +Y
Sbjct: 294 IDEHLQTTVSGIYAAGDCTDQPQFVY 319

Length = 468

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 34/187 (18%)

Query: 43  EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT-TIIF 101
           E++ G + G+ ++R+VA   AL       KKVVV+GGG   ++ A  A+    ++ TI++
Sbjct: 299 EELPGVISGIDFLRNVALGTAL----HPGKKVVVIGGGNTAIDAARTALRLGAESVTILY 354

Query: 102 -------PENHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 143
                  P N             L+ L  P   +R E   +   +K  +G      E   
Sbjct: 355 RRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQG------EPDE 408

Query: 144 DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQ-FRTRMP 199
            GR   V +E GS  T+ ADT++  IG +      E  G+ +S  G ++VD +  +T + 
Sbjct: 409 SGRRRPVPVE-GSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVA 467

Query: 200 GIFAIGD 206
           G+FA GD
Sbjct: 468 GVFAGGD 474

Length = 652

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 22/153 (14%)

Query: 72  KKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 129
           K VVVVGGG   M+ A AA  V      T+++       +   P+  + YE    ++GV+
Sbjct: 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT----KQEMPAWREEYE-EALEDGVE 723

Query: 130 FVKGASIKNLEA--------------GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 175
           F +  + ++ +A                 GR   V+  +  T++ADT++  IG +     
Sbjct: 724 FKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL 783

Query: 176 FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 207
            +  G+     G   VD    T +  ++ IGDV
Sbjct: 784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDV 816

Length = 1019

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 16/124 (12%)

Query: 73  KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------LLQRLFTPSLAQRY- 119
            VV++GGG  G+  A       L   +I  E              LL+      LA    
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60

Query: 120 --EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 177
             E++Y++ GV+ + G  + +++ G    V    +E G  I  D ++I  GA+P +    
Sbjct: 61  LPEEVYKEFGVEVLLGTEVVDIDRGE-KTVVLKDVETGREITYDKLIIATGARPRIPGIP 119

Query: 178 RVGL 181
            V +
Sbjct: 120 GVEV 123

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 34/163 (20%)

Query: 71  AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY--QQNGV 128
            KKV VVGGG   M+ A  A     +   I      + R     +  R E++   ++ G+
Sbjct: 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTI------VYRRSEEEMPARLEEVKHAKEEGI 623

Query: 129 KF----------------VKGASIKNLEAG---SDGRVAAVKLEDGS--TIDADTIVIGI 167
           +F                VK   ++ +E G   + GR   V +  GS  T+D D +++ +
Sbjct: 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIP-GSTFTVDVDLVIVSV 682

Query: 168 GAKPT---VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 207
           G  P     S    + LN   G I VD + ++ +PGI+A GD+
Sbjct: 683 GVSPNPLVPSSIPGLELNRK-GTIVVDEEMQSSIPGIYAGGDI 724

Length = 752

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 73  KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS----LAQRYEQLYQQNGV 128
            ++VVG G  G E A+A     +  T++   + +L     P      A+  E+++ + G+
Sbjct: 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-----PGEDADAAEVLEEVFARRGM 233

Query: 129 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVG 186
             +K +  +++E   DG V  V L DG T++    ++ +G+ P  +    E  G+  +  
Sbjct: 234 TVLKRSRAESVERTGDGVV--VTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPS 291

Query: 187 G-IQVDGQFRTRMPGIFAIGDVAA-FPL 212
           G I VD   RT +PGI+A GD     PL
Sbjct: 292 GHITVDRVSRTSVPGIYAAGDCTGVLPL 319

Length = 466

>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 26/203 (12%)

Query: 21  SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKVVVVG 78
           +G +LK  ++I+ATG   +R+   +   +PG    R+  VA        L K K+V V+G
Sbjct: 308 NGAVLKARTVILATG---ARW-RNMN--VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIG 361

Query: 79  GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL---AQRYEQLYQQNGVKFVKGAS 135
           GG  G+E A       +D   I     LL+  F P L   A   ++L     V  +  A 
Sbjct: 362 GGNSGVEAA-------IDLAGIVEHVTLLE--FAPELKADAVLQDKLRSLPNVTIITNAQ 412

Query: 136 IKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV 190
              +  G   +V  ++  D  +     ++ + + + IG  P     +     +  G I V
Sbjct: 413 TTEV-KGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIV 471

Query: 191 DGQFRTRMPGIFAIGDVAAFPLK 213
           D +  T +PG+FA GD    P K
Sbjct: 472 DARGETNVPGVFAAGDCTTVPYK 494

Length = 520

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 21/153 (13%)

Query: 72  KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 129
           K+++V+GGG IG+E+      +G ++D   +F +         P+  +   +++ +   K
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-------VIPAADKDIVKVFTKRIKK 227

Query: 130 FVK---GASIKNLEAGSDGRVAAVKLEDGSTIDA----DTIVIGIGAKPTVSPF--ERVG 180
                    +  +EA  DG    V +E           D +++ +G  P       E+ G
Sbjct: 228 QFNIMLETKVTAVEAKEDGIY--VTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAG 285

Query: 181 LN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 212
           +     G I+VD Q RT +P IFAIGD+   P+
Sbjct: 286 VEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318

Length = 471

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 3   YQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKI-GGYLPGVHYIRDVA 59
               VT+++ +     +    G+ ++   ++ ATG  +   P    G    GVH +  + 
Sbjct: 101 LSTRVTAVERDGGRFVVRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLE 160

Query: 60  DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 102
             D       K K V V+GGG+  ++ A   +    D T I  
Sbjct: 161 RID------LKGKTVAVIGGGHTAIDAALNLLDLGKDVTWITR 197

Length = 202

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 63/258 (24%), Positives = 97/258 (37%), Gaps = 44/258 (17%)

Query: 24  LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--------VADADALISSLE-KAKKV 74
           L +Y ++ +ATG    R  +  G    GV +  D        V    A   +   K K+V
Sbjct: 206 LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRV 265

Query: 75  VVVGGGYIGMEVAAAAV--GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFV 131
           VV+GGG   M+ A  A+  G K   T  + E+   +    P+ A + E     + GV+ +
Sbjct: 266 VVIGGGDTAMDCAGTALRLGAK-SVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERL 324

Query: 132 KGASIKNLEAGSDGRVAAVKLED-------------------GST--IDADTIVIGIGAK 170
                K       GRV  VK                      G+     ADT+++ IG +
Sbjct: 325 PFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFE 384

Query: 171 PTVSPF--ERVGLNSSVGG-IQVDGQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 226
              +       GL     G I+VD    +T +PG+FA GD              V  +  
Sbjct: 385 GDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVR-----GAAL-VVWAIAE 438

Query: 227 ARQSAQHCIKALLSAQTH 244
            R++A+   K LL  +  
Sbjct: 439 GREAAKAIDKELLLGKAV 456

Length = 457

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 37/214 (17%)

Query: 72  KKVVVVGGGYIGMEVAAAAV---GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 128
           K VVVVGGG   M+ A AA+   G +   T+++       + + P+  +  E    ++GV
Sbjct: 667 KHVVVVGGGNTAMDAARAALRVPGVE-KVTVVYRRT----KRYMPASREELE-EALEDGV 720

Query: 129 KFVKGASIKNLEAG-------------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 175
            F +  S ++ E G             + GR   V   +   + ADT++  +G +     
Sbjct: 721 DFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL 780

Query: 176 FERVGLNSSVGG-IQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 233
            ++ G+     G   V+     T +  +F IGD    P  +      VE +   R++A  
Sbjct: 781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATI------VEAIADGRKAA-- 832

Query: 234 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVW 267
              A+LS +    D    F       E    +V+
Sbjct: 833 --NAILSREGLNSDVDKVF---PINEEVRLAEVY 861

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 34/161 (21%)

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY--QQNGVK 129
           KKV VVGGG + M+ A  A+    +  I++       R     L  R E+++  ++ GV 
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVY-------RRSEEELPARVEEVHHAKEEGVI 334

Query: 130 FVKGASIKNLEAGSDGRVAAVKLE-------DGS-------------TIDADTIVIGIGA 169
           F    +   +    +G V  +K         D S              ++ DT+++ +G 
Sbjct: 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394

Query: 170 KPT---VSPFERVGLNSSVGGIQVDGQF-RTRMPGIFAIGD 206
            P     S  + + +N   G I  D +   T   G+FA GD
Sbjct: 395 SPNPLISSTTKGLKINKR-GCIVADEETGLTSKEGVFAGGD 434

Length = 464

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 20/114 (17%)

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTII-------FPENHLLQRLFT-----PSLAQRY 119
           K++V++GGG+ G+  A        D  I             LL  + T       +A   
Sbjct: 4   KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPL 63

Query: 120 EQLYQ-QNGVKFVKGASIK-NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171
             L +    V+FV+G     + +A        V L D   I  D +V+ +G++ 
Sbjct: 64  RALLRKSGNVQFVQGEVTDIDRDAKK------VTLADLGEISYDYLVVALGSET 111

Length = 405

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 17/190 (8%)

Query: 30  LIVATGCTASRFPEKIGGYLPGVHYIRDVA-DADALISSLEKAKKVVVVGGGYIGMEVAA 88
            ++ATG T +  P  I G +   ++    A  +D L +SL       V+G   +  E+A 
Sbjct: 154 CLIATGSTPT-IP-PIPGLMDTPYWTSTEALFSDELPASL------TVIGSSVVAAEIAQ 205

Query: 89  AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 148
           A    +L + +       L     P L +     +++ G++ +       +E   +G V 
Sbjct: 206 AYA--RLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFV- 262

Query: 149 AVKLEDGSTIDADTIVIGIG--AKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIG 205
            +    G    A+ ++I  G  A       E VG+ +   G I V+    T  P I+A G
Sbjct: 263 -LTTGHGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAG 320

Query: 206 DVAAFPLKMY 215
           D +  P  +Y
Sbjct: 321 DCSDLPQFVY 330

Length = 479

>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit; Validated

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 109 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168
           +LFT  LA   EQL    GVKF     +  L     GR+  V+   G  I AD  V+ +G
Sbjct: 201 QLFTQRLAAMAEQL----GVKFRFNTPVDGLLV-EGGRITGVQTGGG-VITADAYVVALG 254

Length = 416

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 59  ADADALISSLEKAKK---VVVVGGGYIGMEVAAAAV-----------------GWKLDTT 98
             A A  +    AK    V+VVGGG  G   AAAA+                 G  LDT 
Sbjct: 196 TGAAARAAEELNAKDPYDVLVVGGGPAG---AAAAIYAARKGIRTGIVAERFGGQVLDTM 252

Query: 99  IIFPENHLLQRLFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 157
            I  EN +       P LA   E+  ++  V  +       LE  +   +  V+L +G+ 
Sbjct: 253 GI--ENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG--LIEVELANGAV 308

Query: 158 IDADTIVIGIGAK 170
           + A T+++  GA+
Sbjct: 309 LKAKTVILATGAR 321

Length = 517

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 74  VVVVGGGYIGMEVAAAAV-----------------GWKLDTTIIFPENHLLQRLFT-PSL 115
           V+VVGGG  G   AAAA+                 G   DT  I  EN +     T   L
Sbjct: 215 VLVVGGGPAG---AAAAIYAARKGLRTAMVAERIGGQVKDTVGI--ENLISVPYTTGSQL 269

Query: 116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170
           A   E+  +Q  +  ++    K +E  ++  +  V LE G  + A ++++  GA+
Sbjct: 270 AANLEEHIKQYPIDLMENQRAKKIE--TEDGLIVVTLESGEVLKAKSVIVATGAR 322

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
PLN02507	499	glutathione reductase	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PLN02546	558	glutathione reductase	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.97
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.96
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.96
PRK10262	321	thioredoxin reductase; Provisional	99.95
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.95
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.95
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.94
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.94
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.94
PRK12831	464	putative oxidoreductase; Provisional	99.94
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.93
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.93
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.93
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.92
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.92
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.92
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.91
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.9
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.9
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.9
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.89
PRK13984	604	putative oxidoreductase; Provisional	99.89
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.89
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.88
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.88
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.86
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.85
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.84
PLN02852	491	ferredoxin-NADP+ reductase	99.82
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.82
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.8
KOG2755	334	consensus Oxidoreductase [General function predict	99.75
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.69
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.65
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.58
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.57
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.51
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.47
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.37
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.36
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.33
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.26
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.22
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.09
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	99.05
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.99
COG2081	408	Predicted flavoproteins [General function predicti	98.94
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.75
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.72
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.71
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.71
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.69
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.69
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.68
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.65
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	98.64
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.6
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.6
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.59
PRK06847	375	hypothetical protein; Provisional	98.58
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.58
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.55
PTZ00188	506	adrenodoxin reductase; Provisional	98.55
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.54
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.53
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.52
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.5
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.48
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.48
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.47
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.46
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.46
PRK07236	386	hypothetical protein; Provisional	98.44
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.43
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.42
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.4
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.4
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.39
PRK06834	488	hypothetical protein; Provisional	98.36
PRK10262	321	thioredoxin reductase; Provisional	98.36
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.36
PLN02463	447	lycopene beta cyclase	98.36
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.35
PRK07045	388	putative monooxygenase; Reviewed	98.34
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.33
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.33
PRK08163	396	salicylate hydroxylase; Provisional	98.3
PRK12831	464	putative oxidoreductase; Provisional	98.3
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.3
PRK08244	493	hypothetical protein; Provisional	98.29
PLN02852	491	ferredoxin-NADP+ reductase	98.27
PTZ00188	506	adrenodoxin reductase; Provisional	98.26
PRK07588	391	hypothetical protein; Provisional	98.25
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.25
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.25
PRK06116	450	glutathione reductase; Validated	98.24
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.24
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.23
PRK10157	428	putative oxidoreductase FixC; Provisional	98.23
COG0579	429	Predicted dehydrogenase [General function predicti	98.22
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.21
PRK05868	372	hypothetical protein; Validated	98.2
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.19
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.19
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.18
PRK06184	502	hypothetical protein; Provisional	98.18
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.17
PRK09126	392	hypothetical protein; Provisional	98.17
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.16
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.16
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.16
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.16
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.16
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.16
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.14
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.14
PRK08013	400	oxidoreductase; Provisional	98.14
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.13
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.13
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.13
PRK09897	534	hypothetical protein; Provisional	98.13
PRK07190	487	hypothetical protein; Provisional	98.11
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.11
PLN02697	529	lycopene epsilon cyclase	98.1
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.1
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.1
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.09
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.09
PRK06753	373	hypothetical protein; Provisional	98.08
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.08
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.07
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.07
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.06
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.06
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.06
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.03
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.03
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.01
PRK06475	400	salicylate hydroxylase; Provisional	98.01
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.99
PRK06185	407	hypothetical protein; Provisional	97.99
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.99
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.98
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.98
PRK06370	463	mercuric reductase; Validated	97.98
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.97
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.96
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.96
PRK10015	429	oxidoreductase; Provisional	97.96
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.95
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.95
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.95
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.95
PLN02661	357	Putative thiazole synthesis	97.93
PRK09897	534	hypothetical protein; Provisional	97.93
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.91
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.91
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.9
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.9
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.89
PRK06126	545	hypothetical protein; Provisional	97.88
TIGR02053	463	MerA mercuric reductase. This model represents the	97.88
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.88
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.86
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.85
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.84
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.84
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.83
PRK13748	561	putative mercuric reductase; Provisional	97.83
PRK06996	398	hypothetical protein; Provisional	97.83
PLN02546	558	glutathione reductase	97.82
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.81
PRK13984	604	putative oxidoreductase; Provisional	97.8
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.79
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.79
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.78
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.77
PRK14694	468	putative mercuric reductase; Provisional	97.76
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.75
PTZ00058	561	glutathione reductase; Provisional	97.75
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.75
PRK07538	413	hypothetical protein; Provisional	97.75
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.75
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.74
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.72
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.72
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.72
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.71
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.7
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.7
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.7
PLN02507	499	glutathione reductase	97.68
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.68
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.67
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.67
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.67
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.66
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.65
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.64
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.63
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.62
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.61
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.6
PRK14727	479	putative mercuric reductase; Provisional	97.59
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.59
PRK11445	351	putative oxidoreductase; Provisional	97.57
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.56
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.55
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.53
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.52
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.51
PRK08274	466	tricarballylate dehydrogenase; Validated	97.5
PRK07804	541	L-aspartate oxidase; Provisional	97.48
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.47
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.46
PRK08401	466	L-aspartate oxidase; Provisional	97.45
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.45
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.45
PRK07121	492	hypothetical protein; Validated	97.42
PF14721	133	AIF_C: Apoptosis-inducing factor, mitochondrion-as	97.38
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.37
PRK07846	451	mycothione reductase; Reviewed	97.36
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.36
PLN02985	514	squalene monooxygenase	97.35
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.34
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.34
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.34
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.33
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.31
PRK08294	634	phenol 2-monooxygenase; Provisional	97.27
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.25
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.23
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.23
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.23
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.22
PRK08275	554	putative oxidoreductase; Provisional	97.22
PTZ00052	499	thioredoxin reductase; Provisional	97.2
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.19
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.18
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.16
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.15
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.14
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.13
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.12
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.1
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.09
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.09
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.08
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.07
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.07
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.04
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.03
PRK06175	433	L-aspartate oxidase; Provisional	97.03
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.01
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.0
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	96.98
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	96.96
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	96.94
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.93
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.9
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	96.87
PRK13339	497	malate:quinone oxidoreductase; Reviewed	96.84
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.82
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	96.81
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	96.79
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	96.73
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.72
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.66
PRK07395	553	L-aspartate oxidase; Provisional	96.64
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.61
KOG2755	334	consensus Oxidoreductase [General function predict	96.59
PRK08071	510	L-aspartate oxidase; Provisional	96.58
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.57
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.55
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.54
PLN02815	594	L-aspartate oxidase	96.54
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	96.52
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.52
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.48
KOG2852	380	consensus Possible oxidoreductase [General functio	96.46
PRK12842	574	putative succinate dehydrogenase; Reviewed	96.43
COG2907	447	Predicted NAD/FAD-binding protein [General functio	96.41
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.39
PRK07512	513	L-aspartate oxidase; Provisional	96.37
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.36
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.32
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	96.24
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.17
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.17
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.15
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.15
PRK09077	536	L-aspartate oxidase; Provisional	96.11
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.09
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.08
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	96.06
PRK12839	572	hypothetical protein; Provisional	96.05
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	95.96
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	95.94
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	95.86
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.85
PRK11883	451	protoporphyrinogen oxidase; Reviewed	95.83
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.79
PRK07233	434	hypothetical protein; Provisional	95.74
COG3349	485	Uncharacterized conserved protein [Function unknow	95.72
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	95.71
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.68
PTZ00367	567	squalene epoxidase; Provisional	95.67
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.65
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	95.6
PLN02268	435	probable polyamine oxidase	95.56
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.53
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.51
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.5
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.48
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	95.47
PRK07208	479	hypothetical protein; Provisional	95.47
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.44
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.43
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	95.25
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.21
PRK08275	554	putative oxidoreductase; Provisional	95.2
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.2
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.18
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	95.15
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.11
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	95.06
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.02
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	94.94
PLN02612	567	phytoene desaturase	94.88
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.82
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	94.79
PLN02576	496	protoporphyrinogen oxidase	94.76
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.72
PRK07804	541	L-aspartate oxidase; Provisional	94.7
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	94.67
PRK08071	510	L-aspartate oxidase; Provisional	94.64
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	94.63
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.62
PRK12416	463	protoporphyrinogen oxidase; Provisional	94.58
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.57
PRK09077	536	L-aspartate oxidase; Provisional	94.5
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.46
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	94.46
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	94.44
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	94.43
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	94.42
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	94.39
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	94.35
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.35
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.25
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.22
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	94.09
PLN02529	738	lysine-specific histone demethylase 1	94.07
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	94.05
PLN03000	881	amine oxidase	94.03
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	94.02
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	94.0
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	93.99
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	93.99
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	93.99
PRK08401	466	L-aspartate oxidase; Provisional	93.98
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	93.91
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	93.91
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.9
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.75
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	93.73
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.7
KOG2853	509	consensus Possible oxidoreductase [General functio	93.6
PLN02487	569	zeta-carotene desaturase	93.59
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.51
PLN02328	808	lysine-specific histone demethylase 1 homolog	93.47
PRK07512	513	L-aspartate oxidase; Provisional	93.45
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	93.44
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.41
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	93.41
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	93.4
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	93.35
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	93.35
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.31
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	93.29
PLN02568	539	polyamine oxidase	93.27
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.24
COG2081	408	Predicted flavoproteins [General function predicti	93.08
PRK05257	494	malate:quinone oxidoreductase; Validated	93.05
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.01
PLN02612	567	phytoene desaturase	92.97
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	92.97
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.91
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	92.77
PLN02815	594	L-aspartate oxidase	92.66
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	92.64
PRK06175	433	L-aspartate oxidase; Provisional	92.6
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	92.52
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	92.37
PLN02676	487	polyamine oxidase	92.29
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.29
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	92.23
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	92.2
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.16
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	92.07
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	92.03
PRK07395	553	L-aspartate oxidase; Provisional	92.02
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	92.0
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.96
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	91.95
COG3573	552	Predicted oxidoreductase [General function predict	91.9
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	91.87
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	91.82
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.73
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.72
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.72
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	91.65
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	91.64
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	91.57
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.38
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	91.33
PRK04148	134	hypothetical protein; Provisional	91.31
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	91.21
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	91.12
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.03
COG0569	225	TrkA K+ transport systems, NAD-binding component [	90.75
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	90.73
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	90.61
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	90.58
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	90.54
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	90.54
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	90.45
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	90.41
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	90.39
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.03
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	90.03
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	89.98
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	89.95
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	89.91
PRK05257	494	malate:quinone oxidoreductase; Validated	89.81
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	89.8
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.78
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.76
PRK12842	574	putative succinate dehydrogenase; Reviewed	89.74
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	89.72
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	89.7
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	89.7
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	89.63
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	89.63
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	89.61
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.48
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.41
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	89.27
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	89.25
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	89.23
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	89.22
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	89.18
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	89.13
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.09

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=2.2e-49  Score=376.82  Aligned_cols=317  Identities=26%  Similarity=0.375  Sum_probs=277.0

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +.+++|+.||++++.|.+++|+.+.||+||||||++|+.+| .++...++++++++..++..+.+.+..+++++|||+|+
T Consensus        76 ~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~  154 (396)
T PRK09754         76 HSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGT  154 (396)
T ss_pred             EcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCH
Confidence            45678999999999999999989999999999999987544 44555678999999999998888888899999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      +|+|+|..|+++|.+||++++.++++++.+++...+.+.+.++++||++++++.+++++.  ++. ..+.+.+|+++++|
T Consensus       155 ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD  231 (396)
T PRK09754        155 IGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQAD  231 (396)
T ss_pred             HHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECC
Confidence            999999999999999999999999988778899999999999999999999999999974  222 35778899999999


Q ss_pred             EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      .+|+++|.+||+.+++++++..+ ++|.||++++|+.|+|||+|||+..+.+ .|...+.++|++|.+||+.+|+||++ 
T Consensus       232 ~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g-  308 (396)
T PRK09754        232 VVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLG-  308 (396)
T ss_pred             EEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcC-
Confidence            99999999999988888888775 6799999999999999999999987766 67777788999999999999999996 


Q ss_pred             CCCCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-cEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHh
Q 018652          242 QTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  319 (352)
Q Consensus       242 ~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~  319 (352)
                      ...+++.+||||+++|+..       ++++|.... +...+++.+ .++..||+++|+|+|+++ .+.++++..++++++
T Consensus       309 ~~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~  380 (396)
T PRK09754        309 LPLPLLPPPWFWSDQYSDN-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGREIRPIRKWIQ  380 (396)
T ss_pred             CCCCCCCCCceEEEeCCcc-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHHHHHHHHHHH
Confidence            4577899999999999865       899997554 445566544 557788889999999997 789999999999999


Q ss_pred             CCCCCChhhhcCCC
Q 018652          320 SQPFVDKAKLQQAS  333 (352)
Q Consensus       320 ~~~~~~~~~~~~~~  333 (352)
                      .+.++++..+.++.
T Consensus       381 ~~~~~~~~~~~~~~  394 (396)
T PRK09754        381 SGKTFDAKLLIDEN  394 (396)
T ss_pred             CCCCCCHHHhcCcc
Confidence            99999998877764

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=4.9e-49  Score=361.23  Aligned_cols=330  Identities=45%  Similarity=0.774  Sum_probs=301.5

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +++++|+++|..+++|.+.+|+.+.|++|+||||+.+++ +++||.+.++++++++++|++.+...+....+++++|+|+
T Consensus       145 ~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~  223 (478)
T KOG1336|consen  145 ILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGF  223 (478)
T ss_pred             EEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchH
Confidence            678999999999999999999999999999999998875 5578988999999999999999988888899999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      +|+|+|..|...+.+||+|++.+.++++.+.+.+.+.+++.++++||++++++.+.+++.++++++..|.+.+|+++++|
T Consensus       224 ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad  303 (478)
T KOG1336|consen  224 IGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD  303 (478)
T ss_pred             HHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence            99999999999999999999999999999999999999999999999999999999999888899999999999999999


Q ss_pred             EEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          162 TIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       162 ~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      .|++++|.+|++.+++. +..++ +|+|.||+.|||++|||||+|||+.+|.+.++...+++|++.|+.+|+.+...+..
T Consensus       304 lvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~  382 (478)
T KOG1336|consen  304 LVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKM  382 (478)
T ss_pred             eEEEeeccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhc
Confidence            99999999999999986 55554 79999999999999999999999999999888877799999999999987777754


Q ss_pred             CCCCCCCCCCeeeeeccCcCCCCcceeeEEeecCcccEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHh
Q 018652          241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  319 (352)
Q Consensus       241 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~  319 (352)
                      .....++++||||+..|+..       |+++|+...+.++.|+.+ .+|..||++ +..+++.+..+..+....+..+++
T Consensus       383 ~~~~~~~~lPyf~t~~f~~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~  454 (478)
T KOG1336|consen  383 APQDAYDYLPYFYTRFFSLS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLAR  454 (478)
T ss_pred             cCcccccccchHHHHHhhhh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHHHHHHHHHh
Confidence            33334779999999999864       899999988888899876 578999999 888888887888888999999999


Q ss_pred             CCCCCChhhhcCCCchHHHHHH
Q 018652          320 SQPFVDKAKLQQASSVEEALEI  341 (352)
Q Consensus       320 ~~~~~~~~~~~~~~~~~e~~~~  341 (352)
                      .++.+...++++..+.+.++.+
T Consensus       455 ~~~~v~~~~~~~~~~~~~~~~~  476 (478)
T KOG1336|consen  455 QGPEVTSLKLLSKSGDSFWLTI  476 (478)
T ss_pred             cCCcchhhhhccccchhhHHhh
Confidence            9999999888888888887764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=2e-40  Score=337.84  Aligned_cols=307  Identities=22%  Similarity=0.370  Sum_probs=254.1

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +++++|++||++++.|++.+|+++.||+||||||+.|+. |++||.+.++++++++++++..+++....+++++|||||+
T Consensus        72 ~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~-p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~  150 (785)
T TIGR02374        72 YTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFI-LPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGL  150 (785)
T ss_pred             EcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCC-CCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCH
Confidence            467899999999999999999999999999999999874 6678888889999999999999888888899999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      +|+|+|..|+++|.+|+++++.++++++.+++.....+.+.+++.||++++++.++++..  ++....+.+++|+++++|
T Consensus       151 ~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D  228 (785)
T TIGR02374       151 LGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEAD  228 (785)
T ss_pred             HHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcC
Confidence            999999999999999999999999988889999999999999999999999999999974  344567889999999999


Q ss_pred             EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      .||+++|.+|++.++++++++.+ ++|.||++|||+.|+|||+|||+..+...++      .|..|..||+.+|.||++.
T Consensus       229 ~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~ni~g~  301 (785)
T TIGR02374       229 LIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLADHICGV  301 (785)
T ss_pred             EEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHHHhcCC
Confidence            99999999999999988999887 7899999999999999999999987654433      5677999999999999965


Q ss_pred             CCCCCCCCCeeee-eccCcCCCCcceeeEEeecCcc----cEEEEcC-CCCcEEEEEEECCEEEEEEeecCCHHHhhHHH
Q 018652          242 QTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG----ETIEIGN-FDPKIATFWIDSGKLKGVLVESGSPEEFQLLP  315 (352)
Q Consensus       242 ~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~G~~~~----~~~~~~~-~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~  315 (352)
                      ...+|...+.... +.+++.       +..+|....    +.+...+ ....|.++++++++|+|+++ .++..+...+.
T Consensus       302 ~~~~~~~~~~~~~lk~~g~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~~~~L~  373 (785)
T TIGR02374       302 ECEEYEGSDLSAKLKLLGVD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSDYGRLL  373 (785)
T ss_pred             CCcCCCCCccceEEEECCcc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHHHHHHH
Confidence            4355555443211 233321       334443221    1222222 23568899999999999997 67888889999


Q ss_pred             HHHhCCCCCCh
Q 018652          316 TLARSQPFVDK  326 (352)
Q Consensus       316 ~~~~~~~~~~~  326 (352)
                      .+++++..+..
T Consensus       374 ~li~~~~~l~~  384 (785)
T TIGR02374       374 DMVLKQADISE  384 (785)
T ss_pred             HHHHcCCCCCc
Confidence            99987765543

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=3.9e-40  Score=335.53  Aligned_cols=309  Identities=20%  Similarity=0.331  Sum_probs=248.5

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +.+++|++||++.+.|++++|+.++||+||||||++|+ .|++||.+.++++++++++++..+......+++++|||||+
T Consensus        77 ~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~  155 (847)
T PRK14989         77 LVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGL  155 (847)
T ss_pred             EcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCH
Confidence            45778999999999999999989999999999999986 46678887888999999999999888888899999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      +|+|+|..|+++|.+|+++++.++++++.++++.++.+.+.|++.||++++++.+++|..+.++....+.+++|+++++|
T Consensus       156 iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D  235 (847)
T PRK14989        156 LGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVD  235 (847)
T ss_pred             HHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcC
Confidence            99999999999999999999999999878999999999999999999999999999997543344557888999999999


Q ss_pred             EEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          162 TIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       162 ~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      .||+++|.+||+++++++|++.+ +|+|.||++|+|+.|+|||+|||+......++      .+..|..||+.+|.||++
T Consensus       236 ~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a~vaa~~i~g  309 (847)
T PRK14989        236 FIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMAQVAVDHLLG  309 (847)
T ss_pred             EEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHHHHHHHHhcC
Confidence            99999999999999889999875 57899999999999999999999987654432      566799999999999996


Q ss_pred             CCCCCCCCCCee-eeeccCcCCCCcceeeEEeecCcc-----cE-EEEcCCCCcEEEEEEE--CCEEEEEEeecCCHHHh
Q 018652          241 AQTHTYDYLPYF-YSRVFEYEGSPRKVWWQFFGDNVG-----ET-IEIGNFDPKIATFWID--SGKLKGVLVESGSPEEF  311 (352)
Q Consensus       241 ~~~~~~~~~p~~-~~~~~~~~g~~~~~~~~~~G~~~~-----~~-~~~~~~~~~~~~~~~~--~~~v~g~~~~~~~~~~~  311 (352)
                      .. .+|...... -.+.+++.       +..+|...+     +. .........|.++.++  +++|+|+++ .++..+.
T Consensus       310 ~~-~~~~g~~~~~~lk~~G~~-------v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~l-vGd~~~~  380 (847)
T PRK14989        310 SE-NAFEGADLSAKLKLLGVD-------VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVL-VGDTSDY  380 (847)
T ss_pred             CC-cCCCCcccceEEEECCcc-------eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEE-ECCHHHH
Confidence            43 344432211 11222221       333443221     11 2233333557787775  469999997 6777777


Q ss_pred             hHHHHHHhCCCCCCh
Q 018652          312 QLLPTLARSQPFVDK  326 (352)
Q Consensus       312 ~~~~~~~~~~~~~~~  326 (352)
                      ..+..++.++..+..
T Consensus       381 ~~l~~~~~~~~~l~~  395 (847)
T PRK14989        381 GNLLQLVLNAIELPE  395 (847)
T ss_pred             HHHHHHHHcCCCCcc
Confidence            777777766665544

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=2.3e-39  Score=306.27  Aligned_cols=288  Identities=25%  Similarity=0.354  Sum_probs=232.2

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +++++|++||++++.|++ ++..+.||+||||||++|+ .|+++|...  ++.++++.++..+...+..+++++|||+|+
T Consensus        76 ~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~vvViGgG~  151 (377)
T PRK04965         76 FPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRVLVVGGGL  151 (377)
T ss_pred             ECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeEEEECCCH
Confidence            457899999999999887 5667999999999999986 455666433  788899999888888777889999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      +|+|+|..|++.|.+|+++++.++++++.+++.....+++.+++.||++++++.+++++.++ + ...+.+.+|++++||
T Consensus       152 ~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~-~~~v~~~~g~~i~~D  229 (377)
T PRK04965        152 IGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD-S-GIRATLDSGRSIEVD  229 (377)
T ss_pred             HHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccC-C-EEEEEEcCCcEEECC
Confidence            99999999999999999999999988877889999999999999999999999999998542 2 235778899999999


Q ss_pred             EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      .+|+|+|.+|++.+++.+++..++ ++.||++|+|+.|+|||+|||+..+...      .+.|+.|.+||+.+|+||++.
T Consensus       230 ~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~~a~n~~g~  302 (377)
T PRK04965        230 AVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMALAKNLLGQ  302 (377)
T ss_pred             EEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999998875 5999999999999999999999875432      336777999999999999964


Q ss_pred             CCCCCCCCCeeee-eccCcCCCCcceeeEEeecCcc---cEEEEcCCCCcEEEEEEECCEEEEEEeecCCHHH
Q 018652          242 QTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEE  310 (352)
Q Consensus       242 ~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~  310 (352)
                       ..+|...+..++ +.+++       .+.++|....   .+....+....|.++++++|+++|+++.++....
T Consensus       303 -~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~  367 (377)
T PRK04965        303 -NTPLKLPAMLVKVKTPEL-------PLQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMKE  367 (377)
T ss_pred             -CcccccCCccEEEecCce-------eeEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHHH
Confidence             345655443322 23332       2666776543   1222222235678888899999999986554443

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=5.9e-41  Score=321.01  Aligned_cols=307  Identities=22%  Similarity=0.366  Sum_probs=262.2

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +.+.+|+.||++++.|++++|..+.||+|||||||.|+.+ ++||.++++++.+++++|...+....+..++.+|||||.
T Consensus        77 ~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~-PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGL  155 (793)
T COG1251          77 YTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFIL-PIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGL  155 (793)
T ss_pred             EcCCeeEEeccCcceEEccCCcEeecceeEEecCcccccc-CCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccch
Confidence            5688999999999999999999999999999999999854 489999999999999999999888766777889999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      .|+|+|..|.+.|.+++|++..+.++.+++++.....|++.+++.|++++++....++..  .+.+..+.++||+.+++|
T Consensus       156 LGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad  233 (793)
T COG1251         156 LGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPAD  233 (793)
T ss_pred             hhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccce
Confidence            999999999999999999999999999999999999999999999999999998888874  567779999999999999


Q ss_pred             EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      .||+++|.+||.++..++|+..++ +|+||++||||+|+|||+|+|+.+....+|..      .-+.+|++.+|.++++.
T Consensus       234 ~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yGLV------aP~yeq~~v~a~hl~~~  306 (793)
T COG1251         234 LVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYGLV------APLYEQAKVLADHLCGG  306 (793)
T ss_pred             eEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccceeh------hHHHHHHHHHHHHhccC
Confidence            999999999999999999999986 99999999999999999999999988776654      34899999999999976


Q ss_pred             CCCCCCC-CCeeeeeccCcCCCCcceeeEEeecCc----c-cEEEEcCCCCcEEEEEEECCEEEEEEeecCCHHHhhHHH
Q 018652          242 QTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNV----G-ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLP  315 (352)
Q Consensus       242 ~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~G~~~----~-~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~  315 (352)
                      ....|.. .+   +.....+|..    +-..|+..    . .++........|+++.+++|+|+|+++ .++..+-..+.
T Consensus       307 ~~~~y~gsv~---stkLKv~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GDt~d~~~l~  378 (793)
T COG1251         307 EAEAYEGSVT---STKLKVSGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGDTSDGGWLL  378 (793)
T ss_pred             cccccccccc---hhhhcccccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-EeecccchHHH
Confidence            5443332 22   2333344422    33344432    1 233333334679999999999999997 78888888999


Q ss_pred             HHHhCCCCCCh
Q 018652          316 TLARSQPFVDK  326 (352)
Q Consensus       316 ~~~~~~~~~~~  326 (352)
                      .++.++..++.
T Consensus       379 ~li~~~~~~se  389 (793)
T COG1251         379 DLILKGADISE  389 (793)
T ss_pred             HHHhcCCCccc
Confidence            99988887766

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=4.1e-38  Score=302.88  Aligned_cols=315  Identities=21%  Similarity=0.298  Sum_probs=233.2

Q ss_pred             ccCCceEEEECCCcEEEeCCC---e--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--CCCeE
Q 018652            2 IYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g---~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~v   74 (352)
                      +++++|++||+++++|.+.++   +  ++.||+||||||++|+. |..   +.+++++++++.++..+.+.+.  .++++
T Consensus        76 ~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~v  151 (438)
T PRK13512         76 KTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIKANQVDKA  151 (438)
T ss_pred             EeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHhhcCCCEE
Confidence            457899999999999988653   2  47999999999999864 332   2467888888888887776543  46899


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  154 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~  154 (352)
                      +|||||++|+|+|..|++.|.+||++++.+++++ .+++++.+.+.+.|++.||++++++.+++++..      .+.+++
T Consensus       152 vViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~------~v~~~~  224 (438)
T PRK13512        152 LVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEIDAINGN------EVTFKS  224 (438)
T ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC------EEEECC
Confidence            9999999999999999999999999999988876 589999999999999999999999999999631      466778


Q ss_pred             CCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      |+++++|.+++++|++||++++++.+++.+ +|+|.||+++||+.|+|||+|||+..+....+..........|.++|+.
T Consensus       225 g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~  304 (438)
T PRK13512        225 GKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASI  304 (438)
T ss_pred             CCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHH
Confidence            889999999999999999999999998875 5789999999999999999999997543322222223344558999999


Q ss_pred             HHHHHhcCCCCCC---CCCCeeeeeccCcCCCCcceeeEEeecCccc-------EEEE---------cCCCCcEEEEEEE
Q 018652          234 CIKALLSAQTHTY---DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIEI---------GNFDPKIATFWID  294 (352)
Q Consensus       234 aa~~i~~~~~~~~---~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~~---------~~~~~~~~~~~~~  294 (352)
                      +|+||++....++   ..+|+.  ..++..       +..+|....+       ....         .....-+.++.++
T Consensus       305 ~a~ni~g~~~~~~~~~~~~~~~--~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d  375 (438)
T PRK13512        305 VAEQIAGNDTIEFKGFLGNNIV--KFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYD  375 (438)
T ss_pred             HHHHhcCCCccccCCcccceEE--EEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEE
Confidence            9999986432222   223332  222211       2233332210       0000         0011225566553


Q ss_pred             --CCEEEEEEeecCC-HHHhh-HHHHHHhCCCCCCh-h--hhcCCCchH
Q 018652          295 --SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVDK-A--KLQQASSVE  336 (352)
Q Consensus       295 --~~~v~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~  336 (352)
                        +++|+|+++++.+ +.++. .+..+++.+.++++ .  ++..||+++
T Consensus       376 ~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~  424 (438)
T PRK13512        376 TSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYS  424 (438)
T ss_pred             CCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence              5899999987765 66665 44556789988887 2  256677655

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=5.5e-38  Score=297.69  Aligned_cols=301  Identities=25%  Similarity=0.404  Sum_probs=231.1

Q ss_pred             CcEEEeCC--CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652           14 KQTLITNS--GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV   91 (352)
Q Consensus        14 ~~~V~~~~--g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~   91 (352)
                      .++|.+.+  .+++.+|++|||||++|+.+ +.++  +++..++.    .+........+++++|||||++|+|+|..++
T Consensus       121 ~~~v~V~~~~~~~~~a~~iiIATGS~p~~~-~~~~--~~~~~~~~----s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~  193 (454)
T COG1249         121 PHTVEVTGEDKETITADNIIIATGSRPRIP-PGPG--IDGARILD----SSDALFLLELPKSLVIVGGGYIGLEFASVFA  193 (454)
T ss_pred             CCEEEEcCCCceEEEeCEEEEcCCCCCcCC-CCCC--CCCCeEEe----chhhcccccCCCEEEEECCCHHHHHHHHHHH
Confidence            56777665  47899999999999999754 4444  33333332    2222222367999999999999999999999


Q ss_pred             hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCC
Q 018652           92 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGA  169 (352)
Q Consensus        92 ~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~  169 (352)
                      ++|.+||++++.+++++ .+++++++.+.+.|++.|+++++++.+++++..+++  ..+.+++|+  .+++|.+++|+|+
T Consensus       194 ~LG~~VTiie~~~~iLp-~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR  270 (454)
T COG1249         194 ALGSKVTVVERGDRILP-GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGR  270 (454)
T ss_pred             HcCCcEEEEecCCCCCC-cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCC
Confidence            99999999999999998 499999999999999999999999999999865444  467777776  7999999999999


Q ss_pred             CCCch--hhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--C
Q 018652          170 KPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--H  244 (352)
Q Consensus       170 ~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~--~  244 (352)
                      +||++  -|++.|++.+ +|+|.||+.++|++|+|||+|||+..+.          ....|..+|+.+|.||++...  .
T Consensus       271 ~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~  340 (454)
T COG1249         271 KPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPI  340 (454)
T ss_pred             ccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcC
Confidence            99998  3889999987 4899999888889999999999988664          223499999999999996222  2


Q ss_pred             CCCCCCeeeeeccCcCCCCcceeeEEeecCcccE------EEEc--CC-----------CCcEEEEEEE--CCEEEEEEe
Q 018652          245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET------IEIG--NF-----------DPKIATFWID--SGKLKGVLV  303 (352)
Q Consensus       245 ~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~------~~~~--~~-----------~~~~~~~~~~--~~~v~g~~~  303 (352)
                      .+..+|+......+         +.++|....+.      +..+  .+           ...|.++..+  +++|+|+++
T Consensus       341 d~~~iP~~ift~Pe---------ia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahi  411 (454)
T COG1249         341 DYRLIPSVVFTDPE---------IASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHI  411 (454)
T ss_pred             cccCCCEEEECCCc---------ceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEE
Confidence            46778885433333         44455543211      1111  00           1236666665  489999999


Q ss_pred             ecCCHHHhhHHHHH-HhCCCCCChh--hhcCCCchHHHHHHHH
Q 018652          304 ESGSPEEFQLLPTL-ARSQPFVDKA--KLQQASSVEEALEIAR  343 (352)
Q Consensus       304 ~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~e~~~~~~  343 (352)
                      ++.++.++.....+ ++.+.+.+..  .++.||+++|++..++
T Consensus       412 vg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~  454 (454)
T COG1249         412 VGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA  454 (454)
T ss_pred             ECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHhC
Confidence            99999999866655 5888877773  3799999999999874

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=6e-38  Score=303.03  Aligned_cols=325  Identities=21%  Similarity=0.261  Sum_probs=241.8

Q ss_pred             ccCCceEEEECCCcEEEeCC---CeEEe--cCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--CCCeE
Q 018652            2 IYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~---g~~~~--yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~v   74 (352)
                      +++++|++||++++.|.+.+   ++.+.  ||+||||||++|+ .|.++|.+.++++++++..+..++.+.+.  .++++
T Consensus        74 ~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v  152 (444)
T PRK09564         74 KTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI-IPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNI  152 (444)
T ss_pred             EecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEE
Confidence            45789999999999888764   55666  9999999999986 45667776788998988888877766553  46899


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  154 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~  154 (352)
                      +|+|+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++++.++++  ++.+..+.++ 
T Consensus       153 vVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~-  229 (444)
T PRK09564        153 VIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTD-  229 (444)
T ss_pred             EEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeC-
Confidence            9999999999999999999999999999988887668999999999999999999999999999964  3344445554 


Q ss_pred             CCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      +.++++|.+++|+|.+|+++++++++++.+ +|+|.||++++|+.|||||+|||+..+....+.....+.+..|.+||+.
T Consensus       230 ~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~  309 (444)
T PRK09564        230 KGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRM  309 (444)
T ss_pred             CCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHH
Confidence            447999999999999999999999998864 5789999999999999999999998765544444445577889999999


Q ss_pred             HHHHHhcCCCCCCCC--CCeeeeeccCcCCCCcceeeEEeecCccc---------EEEEc---------CCCCcEEEEEE
Q 018652          234 CIKALLSAQTHTYDY--LPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIG---------NFDPKIATFWI  293 (352)
Q Consensus       234 aa~~i~~~~~~~~~~--~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~~---------~~~~~~~~~~~  293 (352)
                      +|+||++.. ..++.  .|.. ...++.       .+..+|....+         .....         +....|.++.+
T Consensus       310 ~a~ni~g~~-~~~~~~~~~~~-~~~~~~-------~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~  380 (444)
T PRK09564        310 VGENLAGRH-VSFKGTLGSAC-IKVLDL-------EAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIY  380 (444)
T ss_pred             HHHHhcCCC-CCCCCcccceE-EEECCE-------EEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEE
Confidence            999999643 22221  1211 111221       13334433211         01010         01123556555


Q ss_pred             --ECCEEEEEEeecCC-HHHhh-HHHHHHhCCCCCChhh--hcCC-CchHHHH
Q 018652          294 --DSGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVDKAK--LQQA-SSVEEAL  339 (352)
Q Consensus       294 --~~~~v~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~--~~~~-~~~~e~~  339 (352)
                        ++++|+|+++++.+ +.++. .+..+|+++.+++.-.  ...+ |+++|+.
T Consensus       381 ~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~  433 (444)
T PRK09564        381 EADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTW  433 (444)
T ss_pred             ECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCc
Confidence              36899999986654 54544 5566789998888732  2333 7776554

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=8.5e-38  Score=300.40  Aligned_cols=312  Identities=22%  Similarity=0.325  Sum_probs=240.2

Q ss_pred             ccCCceEEEECCCcEEEeCC---CeEEe--cCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhh--cCCCeE
Q 018652            2 IYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~---g~~~~--yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--~~~~~v   74 (352)
                      +++++|++||++++.|.+.+   ++.+.  ||+||||||++|+. |.++|.+.+++++.++..++..++..+  ..++++
T Consensus        62 ~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~-~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v  140 (427)
T TIGR03385        62 KTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-PNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENV  140 (427)
T ss_pred             EecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeE
Confidence            45789999999999887753   35677  99999999999864 567776667888899988888777766  457899


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  154 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~  154 (352)
                      +|||+|++|+|+|..|++.|.+|+++++.+.++...+++++...+.+.+++.||++++++.+++++.+  +.+  +.+.+
T Consensus       141 vViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~  216 (427)
T TIGR03385       141 VIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTS  216 (427)
T ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcC
Confidence            99999999999999999999999999999887545688899999999999999999999999999743  332  45678


Q ss_pred             CCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      |+++++|.+|+++|.+|+++++++++++.+ +|+|.||++++|+.|+|||+|||+..+....+.....+.+..|.+||+.
T Consensus       217 g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~  296 (427)
T TIGR03385       217 GGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRI  296 (427)
T ss_pred             CCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHH
Confidence            889999999999999999999999998875 5789999999999999999999998766544443334577889999999


Q ss_pred             HHHHHhcCCCCCCCCCCeee-eeccCcCCCCcceeeEEeecCccc---------EEEEc--C-------CCCcEEEEEEE
Q 018652          234 CIKALLSAQTHTYDYLPYFY-SRVFEYEGSPRKVWWQFFGDNVGE---------TIEIG--N-------FDPKIATFWID  294 (352)
Q Consensus       234 aa~~i~~~~~~~~~~~p~~~-~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~~--~-------~~~~~~~~~~~  294 (352)
                      +|+||.+. ...+...+..+ ...+++.       +..+|....+         .....  .       ...-+.++.++
T Consensus       297 ~a~ni~g~-~~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~  368 (427)
T TIGR03385       297 AGENIAGN-DIEFKGVLGTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYE  368 (427)
T ss_pred             HHHHhcCC-CCCCCCcceeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEE
Confidence            99999864 34444322222 3333321       5555653321         11110  0       01125566664


Q ss_pred             --CCEEEEEEeecCC-HHHhhHH-HHHHhCCCCCCh
Q 018652          295 --SGKLKGVLVESGS-PEEFQLL-PTLARSQPFVDK  326 (352)
Q Consensus       295 --~~~v~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~  326 (352)
                        +++|+|+++++.+ +.++... ..+|+.+.++++
T Consensus       369 ~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~  404 (427)
T TIGR03385       369 KDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKD  404 (427)
T ss_pred             CCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHH
Confidence              5999999987777 7776544 556788888887

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02507 glutathione reductase

Probab=100.00  E-value=4.1e-37  Score=299.50  Aligned_cols=310  Identities=21%  Similarity=0.293  Sum_probs=232.2

Q ss_pred             cCCceEEEECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652            3 YQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG   80 (352)
Q Consensus         3 ~~~~V~~id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG   80 (352)
                      +..++..+|+...+|++.+|+  .+.||+||||||++|+. |.+||.+     ...+.+++..+   ...+++++|||+|
T Consensus       142 i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~-p~ipG~~-----~~~~~~~~~~l---~~~~k~vvVIGgG  212 (499)
T PLN02507        142 YEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQR-PNIPGKE-----LAITSDEALSL---EELPKRAVVLGGG  212 (499)
T ss_pred             EEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCC-CCCCCcc-----ceechHHhhhh---hhcCCeEEEECCc
Confidence            345677788888888888876  58999999999999864 5555532     11233343333   2347899999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEc
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  160 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~  160 (352)
                      ++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.|++.||++++++.+++++..++ . ..+.+.+|+++++
T Consensus       213 ~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~-~-~~v~~~~g~~i~~  289 (499)
T PLN02507        213 YIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEG-G-IKVITDHGEEFVA  289 (499)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCC-e-EEEEECCCcEEEc
Confidence            99999999999999999999999888874 8999999999999999999999999999985433 2 2466778889999


Q ss_pred             CEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652          161 DTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  237 (352)
Q Consensus       161 D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~  237 (352)
                      |.|++++|++||+.+  +++++++.+ +|+|.||+++||+.|||||+|||+..+.          ....|..||+.+|+|
T Consensus       290 D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~~----------l~~~A~~qg~~aa~n  359 (499)
T PLN02507        290 DVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRIN----------LTPVALMEGTCFAKT  359 (499)
T ss_pred             CEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCCc----------cHHHHHHHHHHHHHH
Confidence            999999999999986  578888875 5779999999999999999999996432          445699999999999


Q ss_pred             HhcCCCC--CCCCCCeeeeeccCcCCCCcceeeEEeecCcc--------cEEE------------EcCCCCcEEEEEEE-
Q 018652          238 LLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ETIE------------IGNFDPKIATFWID-  294 (352)
Q Consensus       238 i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~~~------------~~~~~~~~~~~~~~-  294 (352)
                      |+++...  .+..+|+   ..|+++-      +..+|....        +...            .+....-+.++.++ 
T Consensus       360 i~g~~~~~~~~~~~p~---~if~~p~------ia~vGlte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~  430 (499)
T PLN02507        360 VFGGQPTKPDYENVAC---AVFCIPP------LSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDA  430 (499)
T ss_pred             HcCCCCCcCCCCCCCe---EEECCCc------cEEEeCCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEEC
Confidence            9864332  2344454   3444321      233343211        0000            01111235666654 


Q ss_pred             -CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh--hhcCCCchHHHHHHHH
Q 018652          295 -SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA--KLQQASSVEEALEIAR  343 (352)
Q Consensus       295 -~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~  343 (352)
                       +++|+|+++++.++.++... ..+|+.+.++++.  .++.||+++|.+..++
T Consensus       431 ~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~  483 (499)
T PLN02507        431 ETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMR  483 (499)
T ss_pred             CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHH
Confidence             58999999988888777654 4567999999883  3789999999998865

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=3.2e-36  Score=292.22  Aligned_cols=314  Identities=18%  Similarity=0.312  Sum_probs=234.2

Q ss_pred             CceEEEECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChH
Q 018652            5 DPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYI   82 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~   82 (352)
                      .++..++....+|.+.+|+  .+.||+||||||++|+. |+.++...+++++      ++.+......+++++|||+|++
T Consensus       114 g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~~~~~~~v~~------~~~~~~~~~~~~~v~IiGgG~~  186 (461)
T PRK05249        114 GRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDVDFDHPRIYD------SDSILSLDHLPRSLIIYGAGVI  186 (461)
T ss_pred             EEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCCCCCCCeEEc------HHHhhchhhcCCeEEEECCCHH
Confidence            3455566666667766764  69999999999999874 4444433344433      2333333446899999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCE
Q 018652           83 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT  162 (352)
Q Consensus        83 g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~  162 (352)
                      |+|+|..|++.|.+|+++++.+++++ .+++++...+.+.+++.||++++++.+++++..++ . ..+.+.+|+++++|.
T Consensus       187 g~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~-~~v~~~~g~~i~~D~  263 (461)
T PRK05249        187 GCEYASIFAALGVKVTLINTRDRLLS-FLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDD-G-VIVHLKSGKKIKADC  263 (461)
T ss_pred             HHHHHHHHHHcCCeEEEEecCCCcCC-cCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCC-e-EEEEECCCCEEEeCE
Confidence            99999999999999999999999987 48999999999999999999999999999985433 2 245677888999999


Q ss_pred             EEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          163 IVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       163 vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      +++|+|.+||+++  ++.++++.+ +|++.||+++||+.|+|||+|||+..+.          ....|..+|+.+|.+|+
T Consensus       264 vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~----------~~~~A~~~g~~aa~~i~  333 (461)
T PRK05249        264 LLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPS----------LASASMDQGRIAAQHAV  333 (461)
T ss_pred             EEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCcc----------cHhHHHHHHHHHHHHHc
Confidence            9999999999885  567788765 5779999999999999999999996432          34569999999999999


Q ss_pred             cCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc--------------------cEEEEcCCCCcEEEEEEE--CC
Q 018652          240 SAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------------------ETIEIGNFDPKIATFWID--SG  296 (352)
Q Consensus       240 ~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------------------~~~~~~~~~~~~~~~~~~--~~  296 (352)
                      +... ..+..+|..   +|..+-      +.++|....                    .....+. ..-|.++.++  ++
T Consensus       334 g~~~~~~~~~~p~~---i~~~p~------ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~  403 (461)
T PRK05249        334 GEATAHLIEDIPTG---IYTIPE------ISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGD-NVGMLKILFHRETL  403 (461)
T ss_pred             CCCcccccCCCCeE---EECCCc------ceEecCCHHHHHHcCCCeEEEEEccccccceeecCC-CCcEEEEEEECCCC
Confidence            5432 234455654   333210      233333221                    1111111 1235565554  58


Q ss_pred             EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652          297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      +|+|+++++.++.++... ..+|+.+.++++ .. .+.||+++|++..+++.+.+
T Consensus       404 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~  458 (461)
T PRK05249        404 EILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAALDGLN  458 (461)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHhc
Confidence            999999988888887755 455699999988 33 68999999999999876654

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=3.1e-36  Score=290.43  Aligned_cols=303  Identities=20%  Similarity=0.272  Sum_probs=225.4

Q ss_pred             CCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHh
Q 018652           13 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG   92 (352)
Q Consensus        13 ~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~   92 (352)
                      ++++|.+.+|+.+.||+||||||++|+ .|++++.....+   .+.++...+   ...+++++|||+|++|+|+|..|++
T Consensus       115 ~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~~~---~~~~~~~~l---~~~~~~vvIIGgG~iG~E~A~~l~~  187 (451)
T PRK07846        115 GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVRY---HTSDTIMRL---PELPESLVIVGGGFIAAEFAHVFSA  187 (451)
T ss_pred             cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCccE---EchHHHhhh---hhcCCeEEEECCCHHHHHHHHHHHH
Confidence            567888888888999999999999996 455666332222   233333332   2357899999999999999999999


Q ss_pred             CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652           93 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus        93 ~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      +|.+||++++++++++ .+++++.+.+.+.+ +.+|++++++++++++..+ +. ..+.+.+|+++++|.|++++|.+||
T Consensus       188 ~G~~Vtli~~~~~ll~-~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~-~~-v~v~~~~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        188 LGVRVTVVNRSGRLLR-HLDDDISERFTELA-SKRWDVRLGRNVVGVSQDG-SG-VTLRLDDGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             cCCeEEEEEcCCcccc-ccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC-CE-EEEEECCCcEeecCEEEEEECCccC
Confidence            9999999999998886 48889888887755 5689999999999998542 22 3466778889999999999999999


Q ss_pred             chhh--hhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCC
Q 018652          173 VSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTY  246 (352)
Q Consensus       173 ~~~~--~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~  246 (352)
                      ++++  ++++++.+ +|+|.||+++||+.|+|||+|||+..+.          ....|.+||+.+++||++...   ..+
T Consensus       264 ~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~  333 (451)
T PRK07846        264 GDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQ----------LKHVANHEARVVQHNLLHPDDLIASDH  333 (451)
T ss_pred             ccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCcc----------ChhHHHHHHHHHHHHHcCCCCccccCC
Confidence            9884  67788875 6779999999999999999999997532          234599999999999986422   234


Q ss_pred             CCCCeeeeeccCcCCCCcceeeEEeecCccc-------EE-------------EEcCCCCcEEEEEEE--CCEEEEEEee
Q 018652          247 DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-------------EIGNFDPKIATFWID--SGKLKGVLVE  304 (352)
Q Consensus       247 ~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-------------~~~~~~~~~~~~~~~--~~~v~g~~~~  304 (352)
                      ..+|+......+         +..+|....+       ..             ..++ ..-|.++.++  +++|+|++++
T Consensus       334 ~~~p~~if~~p~---------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~Kli~d~~~~~ilG~~~~  403 (451)
T PRK07846        334 RFVPAAVFTHPQ---------IASVGLTENEARAAGLDITVKVQNYGDVAYGWAMED-TTGFVKLIADRDTGRLLGAHII  403 (451)
T ss_pred             CCCCeEEECCCC---------cEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCC-CceEEEEEEECCCCEEEEEEEE
Confidence            556765332222         3334433210       00             0111 1235555554  5999999998


Q ss_pred             cCCHHHhhHH-HHHHhCCCCCChh-h--hcCCCchHHHHHHHHhcC
Q 018652          305 SGSPEEFQLL-PTLARSQPFVDKA-K--LQQASSVEEALEIARAAL  346 (352)
Q Consensus       305 ~~~~~~~~~~-~~~~~~~~~~~~~-~--~~~~~~~~e~~~~~~~~~  346 (352)
                      +.++.++... ..+|+.+.++++- .  ...||+++|++..+++.+
T Consensus       404 g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~  449 (451)
T PRK07846        404 GPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENALLGL  449 (451)
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHHhc
Confidence            8888777644 4567999999883 3  368999999999988753

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=4.9e-36  Score=290.83  Aligned_cols=309  Identities=21%  Similarity=0.270  Sum_probs=226.9

Q ss_pred             CCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652           12 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV   91 (352)
Q Consensus        12 ~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~   91 (352)
                      .+.++|.+ +++++.||+||||||++|+ .|+++|.+..++++..      .+......+++++|||+|++|+|+|..|+
T Consensus       120 ~~~~~v~v-~~~~~~~d~lViATGs~p~-~p~i~G~~~~~~~~~~------~~~~~~~~~~~vvVIGgG~~g~E~A~~l~  191 (463)
T PRK06370        120 ESPNTVRV-GGETLRAKRIFINTGARAA-IPPIPGLDEVGYLTNE------TIFSLDELPEHLVIIGGGYIGLEFAQMFR  191 (463)
T ss_pred             ccCCEEEE-CcEEEEeCEEEEcCCCCCC-CCCCCCCCcCceEcch------HhhCccccCCEEEEECCCHHHHHHHHHHH
Confidence            34567776 4567999999999999986 4666775444444332      22222245799999999999999999999


Q ss_pred             hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCCEEEcCEEEEccCCC
Q 018652           92 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAK  170 (352)
Q Consensus        92 ~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~  170 (352)
                      +.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+.+++..+++....+... +++++++|.||+++|.+
T Consensus       192 ~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~  270 (463)
T PRK06370        192 RFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV  270 (463)
T ss_pred             HcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence            999999999999998875 7889999999999999999999999999986433322223333 34579999999999999


Q ss_pred             CCch-h-hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--
Q 018652          171 PTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--  245 (352)
Q Consensus       171 p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~--  245 (352)
                      ||++ + +++.+++.+ +|+|.||+++||+.|+|||+|||+..+.          ....|..||+.+|+||++....+  
T Consensus       271 pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~  340 (463)
T PRK06370        271 PNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRGA----------FTHTAYNDARIVAANLLDGGRRKVS  340 (463)
T ss_pred             cCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            9988 4 677888775 5779999999999999999999986532          33459999999999998642333  


Q ss_pred             CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cE--EEE----------cCCCCcEEEEEEE--CCEEEEEEee
Q 018652          246 YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFDPKIATFWID--SGKLKGVLVE  304 (352)
Q Consensus       246 ~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~----------~~~~~~~~~~~~~--~~~v~g~~~~  304 (352)
                      +..+|+..   |..+      .+..+|....       +.  ...          .+...-+.++.++  +++|+|++++
T Consensus       341 ~~~~p~~~---~~~p------~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~  411 (463)
T PRK06370        341 DRIVPYAT---YTDP------PLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATIL  411 (463)
T ss_pred             cccCCeEE---EcCC------CcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEE
Confidence            33455532   2211      1333444321       00  000          0011235666664  5899999998


Q ss_pred             cCCHHHhhHH-HHHHhCCCCCChhh--hcCCCchHHHHHHHHhcCCc
Q 018652          305 SGSPEEFQLL-PTLARSQPFVDKAK--LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       305 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~~~~  348 (352)
                      +.++.++... ..+|+.+.++++..  ++.|||++|++..+++++.+
T Consensus       412 g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~  458 (463)
T PRK06370        412 GVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALRR  458 (463)
T ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHhhhh
Confidence            8888887755 45569999999833  68999999999999987643

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=4.9e-36  Score=290.95  Aligned_cols=315  Identities=18%  Similarity=0.282  Sum_probs=231.8

Q ss_pred             cCCceEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652            3 YQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG   80 (352)
Q Consensus         3 ~~~~V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG   80 (352)
                      +..+|+.+|++.++|++.+|  .++.||+||||||++|+ .|++||.+...+  +. ..+...+   ...+++++|||+|
T Consensus       115 ~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~-~p~i~G~~~~~~--~~-~~~~~~l---~~~~~~vvViG~G  187 (468)
T PRK14694        115 LNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA-EPPVPGLAETPY--LT-STSALEL---DHIPERLLVIGAS  187 (468)
T ss_pred             EEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC-CCCCCCCCCCce--Ec-chhhhch---hcCCCeEEEECCC
Confidence            34578889999999998887  37999999999999986 455666432222  22 1222222   2347899999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEc
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  160 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~  160 (352)
                      ++|+|+|..|+++|.+|+++++. ++++ .+++++.+.+++.|++.||++++++.+.+++.+ ++. ..+.+.++ ++++
T Consensus       188 ~~G~E~A~~l~~~g~~Vtlv~~~-~~l~-~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~  262 (468)
T PRK14694        188 VVALELAQAFARLGSRVTVLARS-RVLS-QEDPAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAG-TLRA  262 (468)
T ss_pred             HHHHHHHHHHHHcCCeEEEEECC-CCCC-CCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCC-EEEe
Confidence            99999999999999999999874 6666 378999999999999999999999999999754 222 23555444 6999


Q ss_pred             CEEEEccCCCCCchhh--hhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652          161 DTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  238 (352)
Q Consensus       161 D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  238 (352)
                      |.|++++|.+||++++  ++++++.++|+|.||++++|+.|+|||+|||+..+.          ....|..+|+.+|.||
T Consensus       263 D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i  332 (468)
T PRK14694        263 EQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAGDCTDQPQ----------FVYVAAAGGSRAAINM  332 (468)
T ss_pred             CEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHh
Confidence            9999999999999874  567777777889999999999999999999997543          3445899999999999


Q ss_pred             hcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EEE----------cCCCCcEEEEEEE--CC
Q 018652          239 LSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEI----------GNFDPKIATFWID--SG  296 (352)
Q Consensus       239 ~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~~----------~~~~~~~~~~~~~--~~  296 (352)
                      ++... ..+..+|++.....+         +..+|....+       .  ...          .....-|.++.++  ++
T Consensus       333 ~~~~~~~~~~~~p~~~~~~p~---------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~  403 (468)
T PRK14694        333 TGGDASLDLSAMPEVIFTDPQ---------VATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSG  403 (468)
T ss_pred             cCCCcccccCCCCeEEECCCC---------eEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCC
Confidence            86432 223445654221111         3344443210       0  000          0011235666553  59


Q ss_pred             EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652          297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      +|+|+++++.++.++... ..+|+.+.++++ .. .+.||+++|++..+++.+..
T Consensus       404 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~  458 (468)
T PRK14694        404 RLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQTFTK  458 (468)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHHhhhc
Confidence            999999977788777655 456799999998 33 68999999999999887643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=3.1e-36  Score=290.64  Aligned_cols=307  Identities=18%  Similarity=0.251  Sum_probs=226.0

Q ss_pred             CCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652            4 QDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG   83 (352)
Q Consensus         4 ~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g   83 (352)
                      ..++..+|++...+. .+|+.+.||+||||||++|. .|++||.+     ...+..+.   ......+++++|||+|++|
T Consensus       109 ~g~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~-~p~i~G~~-----~~~~~~~~---~~l~~~~~~vvVIGgG~~g  178 (446)
T TIGR01424       109 EGRARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQ-KPNLPGHE-----LGITSNEA---FHLPTLPKSILILGGGYIA  178 (446)
T ss_pred             EEEEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCC-CCCCCCcc-----ceechHHh---hcccccCCeEEEECCcHHH
Confidence            346777777654443 46778999999999999986 45555532     11122222   2222357899999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEE
Q 018652           84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  163 (352)
Q Consensus        84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v  163 (352)
                      +|+|..+++.|.+|+++++++++++. +++++...+.+.|+++||++++++.+.+++..+++  ..+.+.+|+++++|.+
T Consensus       179 ~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~v  255 (446)
T TIGR01424       179 VEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVV  255 (446)
T ss_pred             HHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEE
Confidence            99999999999999999999988874 88999999999999999999999999999754333  3566778889999999


Q ss_pred             EEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          164 VIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       164 i~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      |+|+|.+||++.  ++..+++.+ +|++.||+++||+.|+|||+|||+..+.          ....|..||+.+|.||++
T Consensus       256 iva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~~a~~i~~  325 (446)
T TIGR01424       256 LFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRIN----------LTPVAIMEATCFANTEFG  325 (446)
T ss_pred             EEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCcc----------chhHHHHHHHHHHHHHhc
Confidence            999999999875  577788765 5779999999999999999999986432          444699999999999996


Q ss_pred             CCCCC--CCCCCeeeeeccCcCCCCcceeeEEeecCcc--------cE--EEE----------cCCCCcEEEEEEE--CC
Q 018652          241 AQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ET--IEI----------GNFDPKIATFWID--SG  296 (352)
Q Consensus       241 ~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~--~~~----------~~~~~~~~~~~~~--~~  296 (352)
                      ....+  +..+|+.....++         +...|....        +.  ...          .....-|.++.++  ++
T Consensus       326 ~~~~~~~~~~~p~~if~~p~---------ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~  396 (446)
T TIGR01424       326 NNPTKFDHDLIATAVFSQPP---------LGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDD  396 (446)
T ss_pred             CCCCccCcCCCCeEEeCCch---------hEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCC
Confidence            44333  3455654332222         233443221        00  000          1111235566553  68


Q ss_pred             EEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHH
Q 018652          297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIA  342 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~  342 (352)
                      +|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|++..+
T Consensus       397 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  445 (446)
T TIGR01424       397 KVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM  445 (446)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence            999999988888887755 4567999999983 3 68999999998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=1e-35  Score=288.36  Aligned_cols=308  Identities=21%  Similarity=0.298  Sum_probs=227.3

Q ss_pred             ECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHH
Q 018652           11 DIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA   88 (352)
Q Consensus        11 d~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~   88 (352)
                      ++....|.+++|+  ++.||+||||||++|+.+| .++...+.+++..++.+.      ...+++++|||+|++|+|+|.
T Consensus       122 ~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p-~~~~~~~~v~~~~~~~~~------~~~~~~vvVIGgG~ig~E~A~  194 (466)
T PRK07845        122 GPHRVKVTTADGGEETLDADVVLIATGASPRILP-TAEPDGERILTWRQLYDL------DELPEHLIVVGSGVTGAEFAS  194 (466)
T ss_pred             CCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCC-CCCCCCceEEeehhhhcc------cccCCeEEEECCCHHHHHHHH
Confidence            3344455556675  6999999999999986443 223223445554333221      234689999999999999999


Q ss_pred             HHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652           89 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  168 (352)
Q Consensus        89 ~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  168 (352)
                      .|++.|.+||++++.+++++. ++++....+.+.|+++||++++++.+.+++..++ . ..+.+.+|+++++|.|++++|
T Consensus       195 ~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~-~~v~~~~g~~l~~D~vl~a~G  271 (466)
T PRK07845        195 AYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVFARRGMTVLKRSRAESVERTGD-G-VVVTLTDGRTVEGSHALMAVG  271 (466)
T ss_pred             HHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCC-E-EEEEECCCcEEEecEEEEeec
Confidence            999999999999999999885 7899999999999999999999999999975433 3 246677888999999999999


Q ss_pred             CCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC
Q 018652          169 AKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT  245 (352)
Q Consensus       169 ~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  245 (352)
                      ++||+.+  +++++++.+ +|+|.||++++|+.|||||+|||+..+.          .+..|..||+.++.++++....+
T Consensus       272 ~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~  341 (466)
T PRK07845        272 SVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCTGVLP----------LASVAAMQGRIAMYHALGEAVSP  341 (466)
T ss_pred             CCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeeccCCcc----------chhHHHHHHHHHHHHHcCCCCCc
Confidence            9999885  578888865 5779999999999999999999997532          45669999999999999643222


Q ss_pred             --CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------c--E-----------EEEcCCCCcEEEEEEE--CCEEEEE
Q 018652          246 --YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--T-----------IEIGNFDPKIATFWID--SGKLKGV  301 (352)
Q Consensus       246 --~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~--~-----------~~~~~~~~~~~~~~~~--~~~v~g~  301 (352)
                        +..+|+   ..|..+-      +..+|....       +  .           ...+. ..-|.++.++  +++|+|+
T Consensus       342 ~~~~~~p~---~vf~~p~------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~  411 (466)
T PRK07845        342 LRLKTVAS---NVFTRPE------IATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGL-RDGFVKLFCRPGTGVVIGG  411 (466)
T ss_pred             CCCCCCCE---EEeCCCc------ceeecCCHHHHHhCCCceEEEEEecccCchhhhcCC-CceEEEEEEECCCCEEEEE
Confidence              334554   3332110      222333211       0  0           01111 1235566553  5899999


Q ss_pred             EeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652          302 LVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       302 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      ++++.++.++... ..+|+++.++++ .. ++.||+++|++..+++.+..
T Consensus       412 ~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~  461 (466)
T PRK07845        412 VVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAARRLMA  461 (466)
T ss_pred             EEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHHHhhc
Confidence            9988888877655 456799999988 23 67999999999999887654

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=5.4e-36  Score=289.62  Aligned_cols=304  Identities=22%  Similarity=0.323  Sum_probs=226.1

Q ss_pred             ceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHH
Q 018652            6 PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGME   85 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e   85 (352)
                      +++.+|  .++|++ +|+++.||+||||||++|+ .|+++|.     ..+.+..   .+......+++++|||+|++|+|
T Consensus       114 ~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~-~p~i~g~-----~~~~~~~---~~~~~~~~~~~vvViGgG~~g~E  181 (450)
T PRK06116        114 FARFVD--AHTVEV-NGERYTADHILIATGGRPS-IPDIPGA-----EYGITSD---GFFALEELPKRVAVVGAGYIAVE  181 (450)
T ss_pred             EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCC-CCCCCCc-----ceeEchh---HhhCccccCCeEEEECCCHHHHH
Confidence            455554  457777 6778999999999999986 4544442     2222222   22222345789999999999999


Q ss_pred             HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652           86 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  165 (352)
Q Consensus        86 ~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  165 (352)
                      +|..|++.|.+|+++++++.+++ .+++++...+.+.|+++||++++++++.+++..+++.+ .+.+.+|+++++|.||+
T Consensus       182 ~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~  259 (450)
T PRK06116        182 FAGVLNGLGSETHLFVRGDAPLR-GFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIW  259 (450)
T ss_pred             HHHHHHHcCCeEEEEecCCCCcc-ccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEE
Confidence            99999999999999999988876 58999999999999999999999999999986544433 56778888999999999


Q ss_pred             ccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 018652          166 GIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  242 (352)
Q Consensus       166 a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  242 (352)
                      ++|.+|+++.  ++.++++.+ +|+|.||+++||++|+|||+|||+..+.          .+..|..||+.+|+||++..
T Consensus       260 a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~  329 (450)
T PRK06116        260 AIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVE----------LTPVAIAAGRRLSERLFNNK  329 (450)
T ss_pred             eeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCcC----------cHHHHHHHHHHHHHHHhCCC
Confidence            9999999985  567788775 5779999999999999999999986432          45569999999999998643


Q ss_pred             C-C--CCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------c--EEE-Ec-----------CCCCcEEEEEEE--CC
Q 018652          243 T-H--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TIE-IG-----------NFDPKIATFWID--SG  296 (352)
Q Consensus       243 ~-~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~--~~~-~~-----------~~~~~~~~~~~~--~~  296 (352)
                      . .  .+..+|+.   .|+.+-      +..+|....       +  ... ..           +...-+.++.++  ++
T Consensus       330 ~~~~~~~~~~p~~---if~~p~------~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~  400 (450)
T PRK06116        330 PDEKLDYSNIPTV---VFSHPP------IGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEE  400 (450)
T ss_pred             CCCcCCcCCCCeE---EeCCCc------cEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCC
Confidence            3 1  34556654   344321      333443221       1  110 00           011235666654  58


Q ss_pred             EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHH
Q 018652          297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIA  342 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~  342 (352)
                      +|+|+++++.++.++... ..+|+.+.++++ .+ ++.||+++|++..+
T Consensus       401 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  449 (450)
T PRK06116        401 KVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM  449 (450)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence            999999988888777654 556799999988 33 68999999999875

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.1e-35  Score=288.11  Aligned_cols=307  Identities=22%  Similarity=0.300  Sum_probs=224.0

Q ss_pred             EEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC
Q 018652           16 TLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW   93 (352)
Q Consensus        16 ~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~   93 (352)
                      .|.+.+|+  +++||+||||||++|..   +||...++.+.+.    +..+......+++++|||+|++|+|+|..|++.
T Consensus       124 ~v~~~~g~~~~~~~d~lVIATGs~p~~---ipg~~~~~~~~~~----~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~  196 (466)
T PRK06115        124 VVKAEDGSETQLEAKDIVIATGSEPTP---LPGVTIDNQRIID----STGALSLPEVPKHLVVIGAGVIGLELGSVWRRL  196 (466)
T ss_pred             EEEcCCCceEEEEeCEEEEeCCCCCCC---CCCCCCCCCeEEC----HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHc
Confidence            34455663  69999999999999853   3454455554443    222333234689999999999999999999999


Q ss_pred             CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-C--CCCEEEcCEEEEccCCC
Q 018652           94 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-E--DGSTIDADTIVIGIGAK  170 (352)
Q Consensus        94 g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-~--~g~~i~~D~vi~a~G~~  170 (352)
                      |.+||++++.+++++. ++++....+++.|++.||++++++.+++++..+++....+.. .  +++++++|.|++++|++
T Consensus       197 G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~  275 (466)
T PRK06115        197 GAQVTVVEYLDRICPG-TDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR  275 (466)
T ss_pred             CCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence            9999999999999885 889999999999999999999999999998543332222222 1  23579999999999999


Q ss_pred             CCchh--hhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCC
Q 018652          171 PTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYD  247 (352)
Q Consensus       171 p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~  247 (352)
                      ||++.  ++..++..+.+++.||++++|+.|+|||+|||+..+.          ....|.+||+.+|+||++... ..+.
T Consensus       276 pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~IyA~GD~~~~~~----------la~~A~~~g~~aa~~i~~~~~~~~~~  345 (466)
T PRK06115        276 PYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPM----------LAHKAEDEAVACIERIAGKAGEVNYG  345 (466)
T ss_pred             cccccCCcccccceeCCCCEEECCCeecCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99885  4566777765568899999999999999999997532          445699999999999986432 2345


Q ss_pred             CCCeeeeeccCcCCCCcceeeEEeecCcc-------cEE-------------EEcCCCCcEEEEEEE--CCEEEEEEeec
Q 018652          248 YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI-------------EIGNFDPKIATFWID--SGKLKGVLVES  305 (352)
Q Consensus       248 ~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~-------------~~~~~~~~~~~~~~~--~~~v~g~~~~~  305 (352)
                      .+|+......+         +..+|....       +..             ..++ ..-|.++.++  +++|+|+++++
T Consensus       346 ~~p~~~~t~p~---------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~~ilG~~~~g  415 (466)
T PRK06115        346 LIPGVIYTRPE---------VATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHE-TEGFAKILADARTDEVLGVHMVG  415 (466)
T ss_pred             CCCeEEECCcc---------cEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCC-CceEEEEEEECCCCEEEEEEEEC
Confidence            56764332222         333443321       010             0111 1235556554  58999999988


Q ss_pred             CCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCccc
Q 018652          306 GSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  350 (352)
Q Consensus       306 ~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~~  350 (352)
                      .++.++... ..+|+.+.++++ .. ++.||+++|.+..+++.+..++
T Consensus       416 ~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~~~~~~~  463 (466)
T PRK06115        416 PSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGWA  463 (466)
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHHHHhcch
Confidence            888887654 456799999988 33 6799999999999998776654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1e-35  Score=288.74  Aligned_cols=314  Identities=25%  Similarity=0.363  Sum_probs=229.9

Q ss_pred             CceEEEECCCcEEEeCC-CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652            5 DPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG   83 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~~-g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g   83 (352)
                      .+++.+|+....|...+ ++.+.||+||||||++|..+   ||...++.. +.+..+...+   ...+++++|||+|++|
T Consensus       112 g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~---pg~~~~~~~-v~~~~~~~~~---~~~~~~vvVvGgG~~g  184 (462)
T PRK06416        112 GEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL---PGIEIDGRV-IWTSDEALNL---DEVPKSLVVIGGGYIG  184 (462)
T ss_pred             EEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC---CCCCCCCCe-EEcchHhhCc---cccCCeEEEECCCHHH
Confidence            45666666666665433 46799999999999998643   343334432 2223333322   2356899999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC---CEEEc
Q 018652           84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDA  160 (352)
Q Consensus        84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~  160 (352)
                      +|+|..|+++|.+||++++.+++++. +++++.+.+++.+++.||++++++++++++.+++ . ..+.+.++   +++++
T Consensus       185 ~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~-v~v~~~~gg~~~~i~~  261 (462)
T PRK06416        185 VEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKIKTGAKAKKVEQTDD-G-VTVTLEDGGKEETLEA  261 (462)
T ss_pred             HHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-E-EEEEEEeCCeeEEEEe
Confidence            99999999999999999999998874 8899999999999999999999999999986433 2 24555555   67999


Q ss_pred             CEEEEccCCCCCchhh--hhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652          161 DTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  238 (352)
Q Consensus       161 D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  238 (352)
                      |.+|+++|.+|+++++  ++++++.++|++.||+++||+.|+|||+|||+..+.          .+..|..||+.+|.||
T Consensus       262 D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~----------~~~~A~~~g~~aa~ni  331 (462)
T PRK06416        262 DYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIGDIVGGPM----------LAHKASAEGIIAAEAI  331 (462)
T ss_pred             CEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEeeecCCCcc----------hHHHHHHHHHHHHHHH
Confidence            9999999999998874  677887777789999999999999999999996432          5567999999999999


Q ss_pred             hcCCCCCC--CCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EE-----------EcCCCCcEEEEEE--E
Q 018652          239 LSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGNFDPKIATFWI--D  294 (352)
Q Consensus       239 ~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~~~~~~~~~~~--~  294 (352)
                      ++. ..++  ..+|++  ..++..       +..+|....+       .  ..           .+. ..-+.++.+  +
T Consensus       332 ~~~-~~~~~~~~~~~~--~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~~~~  400 (462)
T PRK06416        332 AGN-PHPIDYRGIPAV--TYTHPE-------VASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGE-TDGFVKLIFDKK  400 (462)
T ss_pred             cCC-CCCCCCCCCCeE--EECCCc-------eEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCC-CceEEEEEEECC
Confidence            963 3333  334443  222211       3445543221       0  00           011 122555555  3


Q ss_pred             CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCcc
Q 018652          295 SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPVE  349 (352)
Q Consensus       295 ~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~  349 (352)
                      +++|+|+++++.++.++... ..+|+.+.++++ .. +..||+++|++..+++.+.+.
T Consensus       401 ~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~  458 (462)
T PRK06416        401 DGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAALAAAGK  458 (462)
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHhccC
Confidence            69999999988888887754 456799999988 33 678999999999998876543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.3e-35  Score=287.83  Aligned_cols=313  Identities=17%  Similarity=0.255  Sum_probs=226.0

Q ss_pred             ceEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652            6 PVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG   83 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g   83 (352)
                      ++..+|+....|...+|  .++.||+||||||++|+.+|.+++ ..+++.+   ..+...   ....+++++|||+|++|
T Consensus       114 ~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~-~~~~v~~---~~~~~~---~~~~~~~vvIiGgG~iG  186 (471)
T PRK06467        114 LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH-DDPRIWD---STDALE---LKEVPKRLLVMGGGIIG  186 (471)
T ss_pred             EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-CCCcEEC---hHHhhc---cccCCCeEEEECCCHHH
Confidence            34444443334555566  479999999999999875554443 2334432   222222   22457899999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC--C--CEEE
Q 018652           84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STID  159 (352)
Q Consensus        84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~  159 (352)
                      +|+|..|++.|.+||++++.+++++. +++++.+.+.+.|++. |++++++.+++++..+++ + .+.+.+  +  ++++
T Consensus       187 ~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~  262 (471)
T PRK06467        187 LEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQR  262 (471)
T ss_pred             HHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEE
Confidence            99999999999999999999999985 8999999999999988 999999999999754332 2 344433  2  4699


Q ss_pred             cCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHH
Q 018652          160 ADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK  236 (352)
Q Consensus       160 ~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~  236 (352)
                      +|.||+++|++||+++  ++.++++.+ +|+|.||+++||+.|+|||+|||+..+.          ....|..+|+.+|.
T Consensus       263 ~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~----------la~~A~~eG~~aa~  332 (471)
T PRK06467        263 YDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM----------LAHKGVHEGHVAAE  332 (471)
T ss_pred             eCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCcc----------cHHHHHHHHHHHHH
Confidence            9999999999999985  467788875 6779999999999999999999986432          44569999999999


Q ss_pred             HHhcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E-------------EEEcCCCCcEEEEEEE-
Q 018652          237 ALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T-------------IEIGNFDPKIATFWID-  294 (352)
Q Consensus       237 ~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~-------------~~~~~~~~~~~~~~~~-  294 (352)
                      +|++... ..+..+|+..   |..+.      +..+|....+       .             ...+. ..-|.++.++ 
T Consensus       333 ~i~g~~~~~~~~~~p~~~---~~~p~------ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~  402 (471)
T PRK06467        333 VIAGKKHYFDPKVIPSIA---YTEPE------VAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDC-ADGMTKLIFDK  402 (471)
T ss_pred             HHcCCCCCCCCCCCCeEE---ECCCc------eeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCC-CceEEEEEEEC
Confidence            9986432 2234466542   22111      3344443211       0             00111 1235666554 


Q ss_pred             -CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCCcc
Q 018652          295 -SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPVE  349 (352)
Q Consensus       295 -~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~~~  349 (352)
                       +++|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|++..|++.+.++
T Consensus       403 ~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~~  461 (471)
T PRK06467        403 ETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAFEGS  461 (471)
T ss_pred             CCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHhhcCC
Confidence             58999999988888887644 4557899998882 2 679999999999999876654

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=1.9e-35  Score=284.99  Aligned_cols=299  Identities=23%  Similarity=0.308  Sum_probs=221.1

Q ss_pred             CCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHh
Q 018652           13 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG   92 (352)
Q Consensus        13 ~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~   92 (352)
                      ++++|.+ +++.+.||+||||||++|+.++.+||..     ...+   .+.+......+++++|||||++|+|+|..|++
T Consensus       117 ~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~-----~~~~---~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~  187 (450)
T TIGR01421       117 KDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE-----LGTD---SDGFFALEELPKRVVIVGAGYIAVELAGVLHG  187 (450)
T ss_pred             cCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc-----eeEc---HHHhhCccccCCeEEEECCCHHHHHHHHHHHH
Confidence            4556666 5667999999999999986432445432     2112   22333333457999999999999999999999


Q ss_pred             CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEEcCEEEEccCCCC
Q 018652           93 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKP  171 (352)
Q Consensus        93 ~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p  171 (352)
                      .|.+||++++.+++++ .+++++.+.+++.|+++||++++++.+++++...++. ..+.+++| +++++|.|++++|++|
T Consensus       188 ~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~p  265 (450)
T TIGR01421       188 LGSETHLVIRHERVLR-SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKP  265 (450)
T ss_pred             cCCcEEEEecCCCCCc-ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCc
Confidence            9999999999999886 4899999999999999999999999999998543332 35667777 5799999999999999


Q ss_pred             Cchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CC
Q 018652          172 TVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HT  245 (352)
Q Consensus       172 ~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~  245 (352)
                      |+++  ++.++++.+ +|++.||++++|+.|+|||+|||+..+.          .+..|..+|+.+|++|+++..   ..
T Consensus       266 n~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~  335 (450)
T TIGR01421       266 NTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKVE----------LTPVAIAAGRKLSERLFNGKTDDKLD  335 (450)
T ss_pred             CcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCcc----------cHHHHHHHHHHHHHHHhcCCCCCccC
Confidence            9985  577888875 5779999999999999999999996432          445699999999999985432   23


Q ss_pred             CCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EE-E------------EcCCCCcEEEEEEE--CCEEEEE
Q 018652          246 YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TI-E------------IGNFDPKIATFWID--SGKLKGV  301 (352)
Q Consensus       246 ~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~-~------------~~~~~~~~~~~~~~--~~~v~g~  301 (352)
                      +..+|+.   .|..+-      +..+|....+         .. .            .+. ..-+.++.++  +++|+|+
T Consensus       336 ~~~~p~~---~f~~p~------ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~~ilG~  405 (450)
T TIGR01421       336 YNNVPTV---VFSHPP------IGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEK-QKCRMKLVCAGKEEKVVGL  405 (450)
T ss_pred             cccCCeE---EeCCCc------eEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCC-CceEEEEEEECCCCEEEEE
Confidence            4556654   333211      2333432210         00 0            011 1225555443  6999999


Q ss_pred             EeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHH
Q 018652          302 LVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIA  342 (352)
Q Consensus       302 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~  342 (352)
                      ++++.++.++... ..+|+.+.++++ .+ ++.||+++|++..+
T Consensus       406 ~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  449 (450)
T TIGR01421       406 HGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM  449 (450)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence            9988888888755 456799999988 33 68999999988764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=2.1e-35  Score=285.90  Aligned_cols=291  Identities=21%  Similarity=0.288  Sum_probs=215.4

Q ss_pred             eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC---CCcEEE
Q 018652           23 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTI   99 (352)
Q Consensus        23 ~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtv   99 (352)
                      +.+.||+||||||++|. .|+++|.+  .+   .+..+..   .....+++++|||||++|+|+|..+..+   |.+||+
T Consensus       148 ~~~~~d~lIIATGs~p~-~p~i~G~~--~~---~~~~~~~---~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtl  218 (486)
T TIGR01423       148 ERLQAEHILLATGSWPQ-MLGIPGIE--HC---ISSNEAF---YLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTL  218 (486)
T ss_pred             eEEECCEEEEecCCCCC-CCCCCChh--he---echhhhh---ccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEE
Confidence            47999999999999986 45555522  12   2223222   2224579999999999999999877654   999999


Q ss_pred             EecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh--hh
Q 018652          100 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FE  177 (352)
Q Consensus       100 v~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~  177 (352)
                      +++.+++++ .+++++.+.+.+.|+++||++++++.+++++..+++. ..+.+.+|+++++|.+++++|++|++.+  ++
T Consensus       219 i~~~~~il~-~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~  296 (486)
T TIGR01423       219 CYRNNMILR-GFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLD  296 (486)
T ss_pred             EecCCcccc-ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCch
Confidence            999999887 5899999999999999999999999999998543332 3566778889999999999999999886  46


Q ss_pred             hcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCeeee
Q 018652          178 RVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYS  254 (352)
Q Consensus       178 ~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~p~~~~  254 (352)
                      .++++.+ +|+|.||+++||+.|||||+|||+..+.          ....|..||+.+|+||++....  .+..+|+...
T Consensus       297 ~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vf  366 (486)
T TIGR01423       297 KVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVM----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVF  366 (486)
T ss_pred             hhCceECCCCCEecCCCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEe
Confidence            7788765 5779999999999999999999986432          3345999999999999964332  3344665433


Q ss_pred             eccCcCCCCcceeeEEeecCccc-------E--E----------EEcCC-CCcEEEEEEE--CCEEEEEEeecCCHHHhh
Q 018652          255 RVFEYEGSPRKVWWQFFGDNVGE-------T--I----------EIGNF-DPKIATFWID--SGKLKGVLVESGSPEEFQ  312 (352)
Q Consensus       255 ~~~~~~g~~~~~~~~~~G~~~~~-------~--~----------~~~~~-~~~~~~~~~~--~~~v~g~~~~~~~~~~~~  312 (352)
                      ..++         +..+|....+       .  .          ..+.. ..-|.++.++  +++|+|+++++.++.++.
T Consensus       367 t~pe---------ia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI  437 (486)
T TIGR01423       367 SIPP---------IGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEII  437 (486)
T ss_pred             CCCc---------eEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHH
Confidence            2222         2333332210       0  0          00111 1225566553  589999999888888877


Q ss_pred             HH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHH
Q 018652          313 LL-PTLARSQPFVDK-AK-LQQASSVEEALEIAR  343 (352)
Q Consensus       313 ~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~  343 (352)
                      .. ..+|+.+.++++ .. ++.||+++|++..+.
T Consensus       438 ~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~  471 (486)
T TIGR01423       438 QAVGICLKLNAKISDFYNTIGVHPTSAEELCSMR  471 (486)
T ss_pred             HHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence            55 455699999988 33 689999999999886

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=3.2e-35  Score=283.58  Aligned_cols=303  Identities=24%  Similarity=0.307  Sum_probs=223.9

Q ss_pred             CCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHh
Q 018652           13 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG   92 (352)
Q Consensus        13 ~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~   92 (352)
                      +.++|.+.+|++++||+||||||++|.. |+..+  ..+++. .+..+...+.   ..+++++|||+|++|+|+|..|++
T Consensus       118 ~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--~~~~~~-~~~~~~~~l~---~~~k~vvVIGgG~ig~E~A~~l~~  190 (452)
T TIGR03452       118 GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--DSGVRY-HTNEDIMRLP---ELPESLVIVGGGYIAAEFAHVFSA  190 (452)
T ss_pred             cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--CCCCEE-EcHHHHHhhh---hcCCcEEEECCCHHHHHHHHHHHh
Confidence            5678888888889999999999999864 43222  234333 3444444433   357899999999999999999999


Q ss_pred             CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652           93 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus        93 ~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      .|.+|+++++.+++++ .+++++...+.+.+ +.+|++++++.+++++..++ . ..+.+.+|+++++|.+++++|.+||
T Consensus       191 ~G~~Vtli~~~~~ll~-~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~-~-v~v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       191 LGTRVTIVNRSTKLLR-HLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGD-G-VTLTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             CCCcEEEEEccCcccc-ccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCC-e-EEEEEcCCCEEEcCEEEEeeccCcC
Confidence            9999999999988876 47899988887755 46899999999999985433 2 3466778889999999999999999


Q ss_pred             chh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCC
Q 018652          173 VSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTY  246 (352)
Q Consensus       173 ~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~  246 (352)
                      +++  ++.+|++.+ +|+|.||+++||+.|+|||+|||+..+.          ....|..||+.+|+||++...   ..+
T Consensus       267 ~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~  336 (452)
T TIGR03452       267 GDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQ----------LKHVANAEARVVKHNLLHPNDLRKMPH  336 (452)
T ss_pred             CCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCccc----------ChhHHHHHHHHHHHHhcCCCCcccCCC
Confidence            987  456788875 5779999999999999999999997532          233489999999999986432   234


Q ss_pred             CCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--E-----------EEcCCCCcEEEEEEE--CCEEEEEEee
Q 018652          247 DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--I-----------EIGNFDPKIATFWID--SGKLKGVLVE  304 (352)
Q Consensus       247 ~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~-----------~~~~~~~~~~~~~~~--~~~v~g~~~~  304 (352)
                      ..+|+......+         +..+|....+       .  .           ..+. ..-|.++.++  +++|+|++++
T Consensus       337 ~~~p~~i~t~p~---------ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~Klv~d~~t~~ilG~~~v  406 (452)
T TIGR03452       337 DFVPSAVFTHPQ---------IATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMED-TTGFCKLIADRDTGKLLGAHII  406 (452)
T ss_pred             CCCCeEEECCCC---------eeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCC-CCeEEEEEEECCCCEEEEEEEE
Confidence            456654221111         3334433211       0  0           0011 1235555553  6999999998


Q ss_pred             cCCHHHhhHHH-HHHhCCCCCCh-hh--hcCCCchHHHHHHHHhcC
Q 018652          305 SGSPEEFQLLP-TLARSQPFVDK-AK--LQQASSVEEALEIARAAL  346 (352)
Q Consensus       305 ~~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~~e~~~~~~~~~  346 (352)
                      +.++.++.... .+|+.+.++++ ..  ++.||+++|++..+++.+
T Consensus       407 g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~  452 (452)
T TIGR03452       407 GPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL  452 (452)
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhcC
Confidence            88888776554 45699999988 33  468999999999998764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=2.7e-35  Score=288.21  Aligned_cols=306  Identities=16%  Similarity=0.262  Sum_probs=218.9

Q ss_pred             CCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 018652           20 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI   99 (352)
Q Consensus        20 ~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtv   99 (352)
                      ++|++++||+||||||++|+ .|.++|.+  .+  + +.+   .+.. +..+++++|||+|++|+|+|..|+++|.+||+
T Consensus       196 ~~g~~i~ad~lVIATGS~P~-~P~IpG~~--~v--~-ts~---~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtl  265 (561)
T PTZ00058        196 DDGQVIEGKNILIAVGNKPI-FPDVKGKE--FT--I-SSD---DFFK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYI  265 (561)
T ss_pred             CCCcEEECCEEEEecCCCCC-CCCCCCce--eE--E-EHH---HHhh-ccCCCEEEEECCcHHHHHHHHHHHHcCCcEEE
Confidence            56778999999999999986 45555532  12  2 222   2222 23489999999999999999999999999999


Q ss_pred             EecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-CCEEEcCEEEEccCCCCCchhhh-
Q 018652          100 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVSPFE-  177 (352)
Q Consensus       100 v~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~~~~~~-  177 (352)
                      +++++++++ .+++++.+.+.+.|++.||+++++..+.+++..+++.+ .+.+.+ ++++++|.|++++|++||++++. 
T Consensus       266 i~~~~~il~-~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l  343 (561)
T PTZ00058        266 FARGNRLLR-KFDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNL  343 (561)
T ss_pred             EEecccccc-cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCc
Confidence            999998886 58999999999999999999999999999986433333 233334 45799999999999999998763 


Q ss_pred             -hcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCc-----------------------cCCccc-ccccHHHHHHHHH
Q 018652          178 -RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQ  232 (352)
Q Consensus       178 -~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~  232 (352)
                       ..++..++|+|.||+++||+.|+|||+|||+..+..                       ..+... .......|..+|+
T Consensus       344 ~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~  423 (561)
T PTZ00058        344 KALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGR  423 (561)
T ss_pred             cccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHH
Confidence             344445568899999999999999999999984321                       111111 2446777999999


Q ss_pred             HHHHHHhcCCC--CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEE-------------E---cCCC
Q 018652          233 HCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE-------------I---GNFD  285 (352)
Q Consensus       233 ~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~-------------~---~~~~  285 (352)
                      .+|.||++...  ..+..+|+.   .|+.+-      +..+|....+         ...             .   +...
T Consensus       424 ~aa~ni~g~~~~~~~~~~ip~~---vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (561)
T PTZ00058        424 LLADRLFGPFSRTTNYKLIPSV---IFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKE  494 (561)
T ss_pred             HHHHHHhCCCCcccCCCCCCeE---EeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCC
Confidence            99999986422  234455654   333210      2223322110         000             0   0011


Q ss_pred             CcEEEEEEE--CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcC
Q 018652          286 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAAL  346 (352)
Q Consensus       286 ~~~~~~~~~--~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~  346 (352)
                      .-+.++.++  +++|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|++..++..+
T Consensus       495 ~g~~Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~  560 (561)
T PTZ00058        495 KTYLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM  560 (561)
T ss_pred             CeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence            235555553  68999999988888887654 4567999999883 3 689999999998887654

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=3.8e-35  Score=284.72  Aligned_cols=306  Identities=23%  Similarity=0.323  Sum_probs=225.3

Q ss_pred             CCcEEEeCCCe-EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652           13 EKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV   91 (352)
Q Consensus        13 ~~~~V~~~~g~-~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~   91 (352)
                      +.++|.+++|+ .+.||+||||||++|+ .|.+||.+..++++.   .+   +......+++++|||+|.+|+|+|..|+
T Consensus       114 ~~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~~~~~---~~---~~~~~~~~~~vvIIGgG~~g~E~A~~l~  186 (463)
T TIGR02053       114 DPKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAGYLTS---EE---ALALDRIPESLAVIGGGAIGVELAQAFA  186 (463)
T ss_pred             cCCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCceECc---hh---hhCcccCCCeEEEECCCHHHHHHHHHHH
Confidence            45778887754 6899999999999986 466666544444332   22   2222234689999999999999999999


Q ss_pred             hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCCEEEcCEEEEccC
Q 018652           92 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIG  168 (352)
Q Consensus        92 ~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~~i~~D~vi~a~G  168 (352)
                      ++|.+||++++.+++++. +++++...+++.+++.||++++++++++++.+++.  ..+.+.   +++++++|.||+++|
T Consensus       187 ~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G  263 (463)
T TIGR02053       187 RLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATG  263 (463)
T ss_pred             HcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeEC
Confidence            999999999999998875 78999999999999999999999999999854322  233332   235799999999999


Q ss_pred             CCCCch-h-hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC
Q 018652          169 AKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT  245 (352)
Q Consensus       169 ~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~  245 (352)
                      .+|+++ + ++..+++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|.||++....+
T Consensus       264 ~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~  333 (463)
T TIGR02053       264 RRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGLQ----------LEYVAAKEGVVAAENALGGANAK  333 (463)
T ss_pred             CCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCcc----------cHhHHHHHHHHHHHHhcCCCCCc
Confidence            999998 4 677788765 5789999999999999999999997532          45569999999999998642333


Q ss_pred             --CCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EE-----------EcCCCCcEEEEEEE--CCEEEEE
Q 018652          246 --YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGNFDPKIATFWID--SGKLKGV  301 (352)
Q Consensus       246 --~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~~~~~~~~~~~~--~~~v~g~  301 (352)
                        +..+|+.   .|...      .+..+|....+       .  ..           .+. ..-+.++.++  +++|+|+
T Consensus       334 ~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~  403 (463)
T TIGR02053       334 LDLLVIPRV---VFTDP------AVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRD-TRGFIKLVAEPGTGKVLGV  403 (463)
T ss_pred             cCcCCCCeE---EeccC------ceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCC-CcEEEEEEEECCCCEEEEE
Confidence              3344543   22211      13444443210       0  00           011 1235566554  5899999


Q ss_pred             EeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652          302 LVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       302 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      ++++.++.++... ..+|+.+.++++ .. ...||+++|.+..|++.+..
T Consensus       404 ~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~~~~  453 (463)
T TIGR02053       404 QVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQTFYR  453 (463)
T ss_pred             EEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhhc
Confidence            9988888887755 456789988888 33 56899999999999987653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=4.7e-35  Score=284.53  Aligned_cols=317  Identities=22%  Similarity=0.317  Sum_probs=227.6

Q ss_pred             cCCceEEEECC-------CcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCe
Q 018652            3 YQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK   73 (352)
Q Consensus         3 ~~~~V~~id~~-------~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~   73 (352)
                      +..+++.+|+.       ...|.+.+|  .++.||+||||||++|+.+|   +...++.+.+ +..+...   ....+++
T Consensus       110 ~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p---~~~~~~~~~~-~~~~~~~---~~~~~~~  182 (472)
T PRK05976        110 FHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELP---GLPFDGEYVI-SSDEALS---LETLPKS  182 (472)
T ss_pred             EEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCC---CCCCCCceEE-cchHhhC---ccccCCE
Confidence            34567778877       567777777  57999999999999986443   2223343333 2222322   2234789


Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC
Q 018652           74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  153 (352)
Q Consensus        74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~  153 (352)
                      ++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|++.||++++++.+++++...++.+..+.+.
T Consensus       183 vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~  261 (472)
T PRK05976        183 LVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEH  261 (472)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEe
Confidence            999999999999999999999999999999988874 7899999999999999999999999999974212333344455


Q ss_pred             CCC--EEEcCEEEEccCCCCCchh--hhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          154 DGS--TIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       154 ~g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                      +|+  ++++|.+++++|.+|+++.  ++..++..++|++.||++++|+.|+|||+|||+..+.          .+..|..
T Consensus       262 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~~----------~~~~A~~  331 (472)
T PRK05976        262 NGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEPQ----------LAHVAMA  331 (472)
T ss_pred             CCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCcc----------cHHHHHH
Confidence            663  6999999999999999875  3556665566889999999999999999999986431          4556999


Q ss_pred             HHHHHHHHHhcCCCCCCC--CCCeeeeeccCcCCCCcceeeEEeecCcc-------cEE-------------EEcCCCCc
Q 018652          230 SAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI-------------EIGNFDPK  287 (352)
Q Consensus       230 ~g~~aa~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~-------------~~~~~~~~  287 (352)
                      +|+.+|++|++....+++  ..|+.  ..++..       +..+|....       +..             ..+. ..-
T Consensus       332 ~g~~aa~~i~g~~~~~~~~~~~p~~--~~~~p~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g  401 (472)
T PRK05976        332 EGEMAAEHIAGKKPRPFDYAAIPAC--CYTDPE-------VASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGE-SDG  401 (472)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCEE--EECcCc-------eEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhcCC-Cce
Confidence            999999999864323333  34432  111111       233333221       000             0111 123


Q ss_pred             EEEEEEE--CCEEEEEEeecCCHHHhhH-HHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCC
Q 018652          288 IATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  347 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~  347 (352)
                      +.++.++  +++|+|+++++.++.++.. +..+|+.+.++++ .. ++.||+++|.+..+++.+.
T Consensus       402 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~  466 (472)
T PRK05976        402 FVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALAAD  466 (472)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhh
Confidence            5555554  5899999998888887765 4556799999988 33 6799999999999987653

>PLN02546 glutathione reductase

Probab=100.00  E-value=1.7e-35  Score=289.75  Aligned_cols=306  Identities=22%  Similarity=0.307  Sum_probs=226.5

Q ss_pred             CceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHH
Q 018652            5 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGM   84 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~   84 (352)
                      .+++.+|+  ++|.+ +|+.+.||+||||||++|. .|.+||     +..+.   +++.+......+++++|||+|++|+
T Consensus       198 G~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~-~P~IpG-----~~~v~---~~~~~l~~~~~~k~V~VIGgG~iGv  265 (558)
T PLN02546        198 GRGKIVDP--HTVDV-DGKLYTARNILIAVGGRPF-IPDIPG-----IEHAI---DSDAALDLPSKPEKIAIVGGGYIAL  265 (558)
T ss_pred             eEEEEccC--CEEEE-CCEEEECCEEEEeCCCCCC-CCCCCC-----hhhcc---CHHHHHhccccCCeEEEECCCHHHH
Confidence            34555555  45665 5778999999999999986 455444     22222   2334444445689999999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652           85 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  164 (352)
Q Consensus        85 e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  164 (352)
                      |+|..|++.|.+|+++++.+++++ .+++++...+++.|+++||++++++.+.++...+++.+ .+.+.+++...+|.|+
T Consensus       266 E~A~~L~~~g~~Vtlv~~~~~il~-~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Vi  343 (558)
T PLN02546        266 EFAGIFNGLKSDVHVFIRQKKVLR-GFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVM  343 (558)
T ss_pred             HHHHHHHhcCCeEEEEEecccccc-ccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEE
Confidence            999999999999999999998887 58999999999999999999999999999975444433 4555666555699999


Q ss_pred             EccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          165 IGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       165 ~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      +++|++||+++  +++++++.+ +|+|.||+++||++|+|||+|||+..+.          .+..|..+|+.+|+||++.
T Consensus       344 va~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~----------l~~~A~~~g~~~a~~i~g~  413 (558)
T PLN02546        344 FATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRIN----------LTPVALMEGGALAKTLFGN  413 (558)
T ss_pred             EeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence            99999999985  578888875 5789999999999999999999997432          4556999999999999964


Q ss_pred             CC--CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--E----------EEcCCCCcEEEEEEE--CCEE
Q 018652          242 QT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--I----------EIGNFDPKIATFWID--SGKL  298 (352)
Q Consensus       242 ~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~----------~~~~~~~~~~~~~~~--~~~v  298 (352)
                      ..  ..+..+|+   ..|+++-      +..+|....+       .  .          ..+....-|.++.++  +++|
T Consensus       414 ~~~~~~~~~vp~---~vft~Pe------ia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~I  484 (558)
T PLN02546        414 EPTKPDYRAVPS---AVFSQPP------IGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKV  484 (558)
T ss_pred             CCCcCCCCCCCE---EEeCCch------HhhccCCHHHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEE
Confidence            32  23455665   3454311      2222322110       0  0          011111236666553  5899


Q ss_pred             EEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHH
Q 018652          299 KGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIAR  343 (352)
Q Consensus       299 ~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~  343 (352)
                      +|+++++.++.++... ..+|+.+.++++- . ++.||+++|.+..++
T Consensus       485 LGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~  532 (558)
T PLN02546        485 LGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMR  532 (558)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHh
Confidence            9999988888887755 4567999999883 3 689999999998876

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=3.5e-35  Score=291.53  Aligned_cols=314  Identities=19%  Similarity=0.279  Sum_probs=226.6

Q ss_pred             CCceEEEECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            4 QDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         4 ~~~V~~id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      ..++..+|+....|.+.+|+  +++||+||||||++|+ .|+++|.+...  ++...+    .......+++++|||+|+
T Consensus       208 ~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~--~~~~~~----~~~~~~~~~~vvViGgG~  280 (561)
T PRK13748        208 HGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPIPGLKETP--YWTSTE----ALVSDTIPERLAVIGSSV  280 (561)
T ss_pred             EEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCCCCCCccc--eEccHH----HhhcccCCCeEEEECCCH
Confidence            34556677766677776663  6999999999999986 45566632211  222211    111223578999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      +|+|+|..|+++|.+|+++++. .+++. +++++++.+++.|++.||++++++.+++++.. ++. ..+.+.++ ++++|
T Consensus       281 ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D  355 (561)
T PRK13748        281 VALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRAD  355 (561)
T ss_pred             HHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeC
Confidence            9999999999999999999985 46654 78999999999999999999999999999754 332 24555554 69999


Q ss_pred             EEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652          162 TIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  238 (352)
Q Consensus       162 ~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  238 (352)
                      .|++++|.+||+.+  +++++++.+ +|+|.||+++||+.|||||+|||+..+.          ....|..+|+.+|.||
T Consensus       356 ~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i  425 (561)
T PRK13748        356 KLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQ----------FVYVAAAAGTRAAINM  425 (561)
T ss_pred             EEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHH
Confidence            99999999999975  577888875 5779999999999999999999997643          3345899999999999


Q ss_pred             hcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cE--EEE----------cCCCCcEEEEEEE--CC
Q 018652          239 LSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFDPKIATFWID--SG  296 (352)
Q Consensus       239 ~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~----------~~~~~~~~~~~~~--~~  296 (352)
                      ++... .++...|+..  .++..       +..+|....       +.  ...          +....-|.++.++  ++
T Consensus       426 ~g~~~~~~~~~~p~~~--~~~p~-------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~  496 (561)
T PRK13748        426 TGGDAALDLTAMPAVV--FTDPQ-------VATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSG  496 (561)
T ss_pred             cCCCcccCCCCCCeEE--EccCC-------ceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCC
Confidence            86432 1233455432  11111       333443321       00  000          0011336666664  68


Q ss_pred             EEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCCc
Q 018652          297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      +|+|+++++..+.++... ..+|+.+.++++. . ++.|||++|.+..+++.+..
T Consensus       497 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~  551 (561)
T PRK13748        497 RLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNK  551 (561)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHHHhhc
Confidence            999999988788777644 4567999999883 2 67999999999999987643

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=8.2e-35  Score=282.36  Aligned_cols=313  Identities=25%  Similarity=0.366  Sum_probs=225.9

Q ss_pred             ceEEEE-----CCCcEEEe--CCC--eEEecCeEEEccCCCCCCCCCCCCCCC-CcEEEecCHHHHHHHHHhhcCCCeEE
Q 018652            6 PVTSID-----IEKQTLIT--NSG--KLLKYGSLIVATGCTASRFPEKIGGYL-PGVHYIRDVADADALISSLEKAKKVV   75 (352)
Q Consensus         6 ~V~~id-----~~~~~V~~--~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~-~~v~~~~~~~~~~~~~~~~~~~~~vv   75 (352)
                      .|+.|+     .+.++|.+  .+|  .+++||+||||||++|+.+   |+.+. ..+++.   .+.  +. ....+++++
T Consensus       106 ~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~---pg~~~~~~v~~~---~~~--~~-~~~~~~~vv  176 (466)
T PRK07818        106 KITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL---PGTSLSENVVTY---EEQ--IL-SRELPKSIV  176 (466)
T ss_pred             CCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC---CCCCCCCcEEch---HHH--hc-cccCCCeEE
Confidence            455555     34555444  454  3699999999999998643   34322 233332   211  11 123578999


Q ss_pred             EECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc--C
Q 018652           76 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--E  153 (352)
Q Consensus        76 VvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~--~  153 (352)
                      |||+|++|+|+|..|+++|.+|+++++.+++++. +++++...+.+.|+++||++++++.+++++.. ++.+ .+.+  .
T Consensus       177 VIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~  253 (466)
T PRK07818        177 IAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-TVTVSKK  253 (466)
T ss_pred             EECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEEec
Confidence            9999999999999999999999999999999885 78999999999999999999999999999754 2222 3333  3


Q ss_pred             CC--CEEEcCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHH
Q 018652          154 DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  228 (352)
Q Consensus       154 ~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~  228 (352)
                      +|  +++++|.|++++|.+||+++  ++..++..+ +|+|.||+++||+.|+|||+|||+..+.          .+..|.
T Consensus       254 ~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~----------l~~~A~  323 (466)
T PRK07818        254 DGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQ----------LAHVAE  323 (466)
T ss_pred             CCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCcc----------cHhHHH
Confidence            56  36999999999999999885  577888764 5779999999999999999999986421          556699


Q ss_pred             HHHHHHHHHHhcCCCC---CCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EE-----------EcCCC
Q 018652          229 QSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGNFD  285 (352)
Q Consensus       229 ~~g~~aa~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~~~  285 (352)
                      .||+.+|.||++....   .+..+|+......+         +.++|....+       .  ..           .+. .
T Consensus       324 ~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~---------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~  393 (466)
T PRK07818        324 AQGVVAAETIAGAETLELGDYRMMPRATFCQPQ---------VASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGD-P  393 (466)
T ss_pred             HHHHHHHHHHcCCCCCccCccCCCCeEEECCCC---------eEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCC-C
Confidence            9999999999964322   34455653211111         3334433210       0  00           111 1


Q ss_pred             CcEEEEEEE--CCEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCccc
Q 018652          286 PKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  350 (352)
Q Consensus       286 ~~~~~~~~~--~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~~  350 (352)
                      .-|.++.++  +++|+|+++++.++.++.... .+|+.+.++++ .. ++.||+++|++..+++.+..++
T Consensus       394 ~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~  463 (466)
T PRK07818        394 TGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHGLAGHM  463 (466)
T ss_pred             CeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHHhhcCc
Confidence            235555554  589999999888888877554 55789999988 33 6899999999999998876653

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=3.4e-35  Score=283.35  Aligned_cols=309  Identities=19%  Similarity=0.269  Sum_probs=227.9

Q ss_pred             CceEEEECCCcEEEeCCCe-EEecCeEEEccCCCCCCCCCCCCCC-CCcEEEecCHHHHHHHHHhhcCCCeEEEECCChH
Q 018652            5 DPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYI   82 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~~g~-~~~yd~lViAtG~~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~   82 (352)
                      .++..+|++...|.+.++. ++.||+||||||++|. .|+++|.. .+++++.      ..+......+++++|||+|++
T Consensus        97 g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~-~p~i~G~~~~~~v~~~------~~~~~~~~~~~~v~ViGgG~~  169 (441)
T PRK08010         97 GQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYDS------TGLLNLKELPGHLGILGGGYI  169 (441)
T ss_pred             EEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC-CCCCCCccCCCCEECh------hHhhcccccCCeEEEECCCHH
Confidence            4566777777777777775 6999999999999986 46666642 4555432      223333346789999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCE
Q 018652           83 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADT  162 (352)
Q Consensus        83 g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~  162 (352)
                      |+|+|..|++.|.+|+++++++++++. +++++...+.+.|+++||++++++.+++++.. ++.+ .+.++++ ++++|.
T Consensus       170 g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~  245 (441)
T PRK08010        170 GVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDA  245 (441)
T ss_pred             HHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCE
Confidence            999999999999999999999988875 68899999999999999999999999999854 2322 4555555 589999


Q ss_pred             EEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          163 IVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       163 vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      +++++|.+||+++  +++++++.+ +|+|.||+++||+.|+|||+|||+..+.          ....|..+|+.++.+|+
T Consensus       246 vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~a~~~~~~~~~~~~  315 (441)
T PRK08010        246 LLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ----------FTYISLDDYRIVRDELL  315 (441)
T ss_pred             EEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHHc
Confidence            9999999999876  467788765 5789999999999999999999997542          22338889999999998


Q ss_pred             cCCCC---CCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEE-----------EcCCCCcEEEEEEE--
Q 018652          240 SAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE-----------IGNFDPKIATFWID--  294 (352)
Q Consensus       240 ~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~-----------~~~~~~~~~~~~~~--  294 (352)
                      +....   .+..+|+.   .|..+-      +..+|....+         ...           .++. ..+.++.++  
T Consensus       316 g~~~~~~~~~~~~p~~---~~~~p~------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~kli~d~~  385 (441)
T PRK08010        316 GEGKRSTDDRKNVPYS---VFMTPP------LSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDT-RGVLKAIVDNK  385 (441)
T ss_pred             CCCCcccCccCCCCEE---EECCCC------ceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCC-ceEEEEEEECC
Confidence            63221   23345643   221110      3334433210         000           1111 225666653  


Q ss_pred             CCEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh--hhhcCCCchHHHHHHHHh
Q 018652          295 SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK--AKLQQASSVEEALEIARA  344 (352)
Q Consensus       295 ~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~e~~~~~~~  344 (352)
                      +++|+|+++++.++.++.... .+|.++.++++  ..++.||+++|.+..++.
T Consensus       386 ~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  438 (441)
T PRK08010        386 TQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS  438 (441)
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence            699999999888888777554 45689999888  336899999999988764

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-34  Score=286.75  Aligned_cols=306  Identities=20%  Similarity=0.268  Sum_probs=219.5

Q ss_pred             cEEEe-CCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC
Q 018652           15 QTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW   93 (352)
Q Consensus        15 ~~V~~-~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~   93 (352)
                      ++|.+ .+|+++.||+||||||++|+. |+.++.+.+++++.   .++..+.   ..+++++|||+|++|+|+|..|+++
T Consensus       262 ~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~ts---~d~~~l~---~lpk~VvIVGgG~iGvE~A~~l~~~  334 (659)
T PTZ00153        262 NTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFTS---DTAVKLE---GLQNYMGIVGMGIIGLEFMDIYTAL  334 (659)
T ss_pred             CeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEeh---HHhhhhh---hcCCceEEECCCHHHHHHHHHHHhC
Confidence            44544 366789999999999999864 44334333445543   3343332   3478999999999999999999999


Q ss_pred             CCcEEEEecCCcccccccCHHHHHHHHHHH-HhCCcEEEcCCeEEEEEecCCCcEEEEEcC-------CC--------CE
Q 018652           94 KLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------DG--------ST  157 (352)
Q Consensus        94 g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l-~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-------~g--------~~  157 (352)
                      |.+||++++.+++++ .+++++.+.+.+.+ ++.||++++++.+++++..+++....+.+.       ++        ++
T Consensus       335 G~eVTLIe~~~~ll~-~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~  413 (659)
T PTZ00153        335 GSEVVSFEYSPQLLP-LLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE  413 (659)
T ss_pred             CCeEEEEeccCcccc-cCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE
Confidence            999999999999998 48999999998875 679999999999999986533332234332       11        36


Q ss_pred             EEcCEEEEccCCCCCchh--hhhcCCcccCCcEEeCCCCCCC------CCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          158 IDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       158 i~~D~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~------~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                      +++|.|++++|++||++.  ++..++..++|+|.||++|||+      +|+|||+|||+..+.          ....|..
T Consensus       414 i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~----------La~~A~~  483 (659)
T PTZ00153        414 TYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM----------LAHTASH  483 (659)
T ss_pred             EEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc----------CHHHHHH
Confidence            999999999999999987  4677887777889999999997      699999999986431          3456999


Q ss_pred             HHHHHHHHHhcCC------------CC--CCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------------------
Q 018652          230 SAQHCIKALLSAQ------------TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------------------  276 (352)
Q Consensus       230 ~g~~aa~~i~~~~------------~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------------------  276 (352)
                      ||+.++++|.+..            ..  .|..+|+......+         +.++|....                   
T Consensus       484 qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~Pe---------iA~VGlTE~eA~~~g~~~~v~v~~~~~~  554 (659)
T PTZ00153        484 QALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPE---------LAFIGLTEKEAKELYPPDNVGVEISFYK  554 (659)
T ss_pred             HHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCc---------eEEeeCCHHHHHhcCCCcceEEEEEEec
Confidence            9999999998642            11  24445552111111         222232111                   


Q ss_pred             ---cEEEEcC---------------------CCCcEEEEEEE--CCEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh-hh
Q 018652          277 ---ETIEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK  328 (352)
Q Consensus       277 ---~~~~~~~---------------------~~~~~~~~~~~--~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~  328 (352)
                         .....++                     ...-+.++.++  +++|+|+++++.++.+++... .+|+.+.++++ ..
T Consensus       555 ~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~  634 (659)
T PTZ00153        555 ANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAH  634 (659)
T ss_pred             ccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence               0000000                     01235556553  689999999888888887554 45699999988 33


Q ss_pred             -hcCCCchHHHHHHHHhcCC
Q 018652          329 -LQQASSVEEALEIARAALP  347 (352)
Q Consensus       329 -~~~~~~~~e~~~~~~~~~~  347 (352)
                       ++.||+++|.+..+++++.
T Consensus       635 ~~~~hPT~sE~~~~a~~~~~  654 (659)
T PTZ00153        635 MVHSHPTISEVLDAAFKAIA  654 (659)
T ss_pred             CcCCCCChHHHHHHHHHHHH
Confidence             6799999999999998764

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=9.7e-35  Score=282.38  Aligned_cols=307  Identities=19%  Similarity=0.232  Sum_probs=219.8

Q ss_pred             EECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHH
Q 018652           10 IDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA   87 (352)
Q Consensus        10 id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A   87 (352)
                      ++.....|.+.+|+  ++.||+||||||++|+ .|+++|......  +.. .+  .+. ....+++++|||+|++|+|+|
T Consensus       132 ~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~p~i~G~~~~~~--~~~-~~--~l~-~~~~~k~vvVIGgG~iG~E~A  204 (479)
T PRK14727        132 KDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIPGLMDTPY--WTS-TE--ALF-SDELPASLTVIGSSVVAAEIA  204 (479)
T ss_pred             ecCCEEEEEeCCCceEEEEeCEEEEecCCCCC-CCCCCCcCccce--ecc-hH--Hhc-cccCCCeEEEECCCHHHHHHH
Confidence            34444456666663  6999999999999986 455565322221  211 11  111 123468999999999999999


Q ss_pred             HHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652           88 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  167 (352)
Q Consensus        88 ~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  167 (352)
                      ..|+++|.+|+++++. ++++. +++++.+.+++.|++.||++++++.+++++..++ . ..+.+.++ ++++|.+|+++
T Consensus       205 ~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~-~~v~~~~g-~i~aD~VlvA~  279 (479)
T PRK14727        205 QAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEKEGIEVLNNTQASLVEHDDN-G-FVLTTGHG-ELRAEKLLIST  279 (479)
T ss_pred             HHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC-E-EEEEEcCC-eEEeCEEEEcc
Confidence            9999999999999875 56664 7899999999999999999999999999975432 2 24555555 59999999999


Q ss_pred             CCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-
Q 018652          168 GAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-  243 (352)
Q Consensus       168 G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-  243 (352)
                      |..||+.+  ++.++++.+ +|+|.||+++||+.|+|||+|||+..+.          ....|..+|+.+|.||++... 
T Consensus       280 G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~  349 (479)
T PRK14727        280 GRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNAT  349 (479)
T ss_pred             CCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCcc
Confidence            99999885  567788765 5779999999999999999999997643          334589999999999986432 


Q ss_pred             CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EE----------EcCCCCcEEEEEEE--CCEEEEEE
Q 018652          244 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE----------IGNFDPKIATFWID--SGKLKGVL  302 (352)
Q Consensus       244 ~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~----------~~~~~~~~~~~~~~--~~~v~g~~  302 (352)
                      .++...|+......+         +..+|....+       .  ..          .+....-+.++.++  +++|+|++
T Consensus       350 ~~~~~~p~~~~~~p~---------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~  420 (479)
T PRK14727        350 LDLSAMPAVIFTDPQ---------VATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQ  420 (479)
T ss_pred             cccccCCcEEEecCc---------eeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEE
Confidence            223445543211111         3334433210       0  00          00011235666654  58999999


Q ss_pred             eecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCC
Q 018652          303 VESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALP  347 (352)
Q Consensus       303 ~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~  347 (352)
                      +++.++.++... ..+|+.+.++++. . .+.|||++|++..+++.+.
T Consensus       421 ~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~  468 (479)
T PRK14727        421 ILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQTFR  468 (479)
T ss_pred             EECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHHhhh
Confidence            988888777655 4567899999883 3 6899999999999997654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=4e-34  Score=276.83  Aligned_cols=313  Identities=19%  Similarity=0.227  Sum_probs=223.7

Q ss_pred             CceEEEECCCcEEEeCCC-eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652            5 DPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG   83 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~~g-~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g   83 (352)
                      .++..+|.....|..+++ ++++||+||||||++|+.+| +++.+.+.+++.   .   ........+++++|||+|++|
T Consensus       110 g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~v~~~---~---~~~~~~~~~~~vvIIGgG~iG  182 (458)
T PRK06912        110 GKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKWIINS---K---HAMSLPSIPSSLLIVGGGVIG  182 (458)
T ss_pred             EEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCeEEcc---h---HHhCccccCCcEEEECCCHHH
Confidence            344556655556665555 46999999999999986543 344323333322   2   222333457899999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcC
Q 018652           84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDAD  161 (352)
Q Consensus        84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D  161 (352)
                      +|+|..|++.|.+|+++++.+++++. +++++.+.+.+.|++.||++++++.+++++..+ .. ..+.. +|  +++++|
T Consensus       183 ~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~-v~~~~-~g~~~~i~~D  258 (458)
T PRK06912        183 CEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVKIFTGAALKGLNSYK-KQ-ALFEY-EGSIQEVNAE  258 (458)
T ss_pred             HHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CE-EEEEE-CCceEEEEeC
Confidence            99999999999999999999998875 788999999999999999999999999997532 22 22332 34  369999


Q ss_pred             EEEEccCCCCCchh--hhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          162 TIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       162 ~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      .+++++|.+|+++.  ++..++..+++++.||+++||+.|+|||+|||+..+.          .+..|..+|+.+|.+|.
T Consensus       259 ~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~~~~~~----------la~~A~~~g~~aa~~~~  328 (458)
T PRK06912        259 FVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDVIGGIQ----------LAHVAFHEGTTAALHAS  328 (458)
T ss_pred             EEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHHc
Confidence            99999999999875  4667777766679999999999999999999996432          44569999999999998


Q ss_pred             cCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEE-------------EEcCCCCcEEEEEEE--CC
Q 018652          240 SAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI-------------EIGNFDPKIATFWID--SG  296 (352)
Q Consensus       240 ~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~-------------~~~~~~~~~~~~~~~--~~  296 (352)
                      +... ..+..+|.......+         +..+|....       +..             ..+. ..-+.++.++  ++
T Consensus       329 g~~~~~~~~~~p~~v~~~p~---------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~  398 (458)
T PRK06912        329 GEDVKVNYHAVPRCIYTSPE---------IASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGE-QTGKVKVIVEPKYQ  398 (458)
T ss_pred             CCCCCCCcCCCCeEEecCch---------hEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCC-CceEEEEEEECCCC
Confidence            6432 124556653211111         222333211       000             0111 1235666654  58


Q ss_pred             EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652          297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      +|+|+++++.++.++... ..+|+.+.++++ .. ++.||+++|++..+++.+..
T Consensus       399 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~  453 (458)
T PRK06912        399 EIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVG  453 (458)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHHHhhc
Confidence            999999988888877654 456789999887 23 68999999999999876544

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=1.7e-34  Score=280.09  Aligned_cols=293  Identities=21%  Similarity=0.247  Sum_probs=211.9

Q ss_pred             eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652           23 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        23 ~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      ..++||+||||||++|+. |++||...    ...+   .+.+......+++++|||||++|+|+|..|+++|.+||++++
T Consensus       140 ~~~~~d~lVIATGs~p~~-p~ipG~~~----~~~~---~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~  211 (484)
T TIGR01438       140 KIYSAERFLIATGERPRY-PGIPGAKE----LCIT---SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR  211 (484)
T ss_pred             eEEEeCEEEEecCCCCCC-CCCCCccc----eeec---HHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence            369999999999999864 55555321    1112   223333334568999999999999999999999999999987


Q ss_pred             CCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC---CEEEcCEEEEccCCCCCchh--hh
Q 018652          103 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FE  177 (352)
Q Consensus       103 ~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~--~~  177 (352)
                       +++++ .+++++++.+++.|+++||++++++.+.+++..++ . ..+++.++   +++++|.|++++|++||+++  ++
T Consensus       212 -~~~l~-~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~  287 (484)
T TIGR01438       212 -SILLR-GFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEA-K-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLE  287 (484)
T ss_pred             -ccccc-ccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-e-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcc
Confidence             46665 58999999999999999999999999999875432 2 24555555   37999999999999999986  56


Q ss_pred             hcCCccc--CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCeee
Q 018652          178 RVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFY  253 (352)
Q Consensus       178 ~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~p~~~  253 (352)
                      +.+++.+  +|+|.||+++||+.|+|||+|||+.....         ....|..+|+.+|+||++...  ..+..+|+..
T Consensus       288 ~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~~---------l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i  358 (484)
T TIGR01438       288 NVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQE---------LTPVAIQAGRLLAQRLFSGSTVICDYENVPTTV  358 (484)
T ss_pred             cccceecCcCCeEecCCCcccCCCCEEEEEEecCCCcc---------chHHHHHHHHHHHHHHhcCCCcccccccCCeEE
Confidence            7788765  37799999999999999999999963211         345599999999999986432  2355566643


Q ss_pred             eeccCcCCCCcceeeEEeecCccc---------EE-E------------EcCC-CCcEEEEEE-E--CCEEEEEEeecCC
Q 018652          254 SRVFEYEGSPRKVWWQFFGDNVGE---------TI-E------------IGNF-DPKIATFWI-D--SGKLKGVLVESGS  307 (352)
Q Consensus       254 ~~~~~~~g~~~~~~~~~~G~~~~~---------~~-~------------~~~~-~~~~~~~~~-~--~~~v~g~~~~~~~  307 (352)
                      ...++         +..+|....+         .. .            .++. ..-|.++.+ +  +++|+|+++++.+
T Consensus       359 ~~~p~---------ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~  429 (484)
T TIGR01438       359 FTPLE---------YGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPN  429 (484)
T ss_pred             eCCCc---------eeeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCC
Confidence            22222         2233322110         00 0            0000 112455543 2  5899999998878


Q ss_pred             HHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhc
Q 018652          308 PEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAA  345 (352)
Q Consensus       308 ~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~  345 (352)
                      +.++... ..+|+.+.++++ .. ++.||+++|++..++..
T Consensus       430 a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~  470 (484)
T TIGR01438       430 AGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVT  470 (484)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhh
Confidence            8877644 456799999888 22 68999999999998855

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=1.3e-35  Score=275.05  Aligned_cols=237  Identities=25%  Similarity=0.359  Sum_probs=193.5

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--------CC--
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--------KA--   71 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--------~~--   71 (352)
                      +.+++|++||+++++|+++++..++||+||||+|+.+.+ ..+||. .+..+.+++++|+.+++.++.        ..  
T Consensus        75 ~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~  152 (405)
T COG1252          75 FVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDD  152 (405)
T ss_pred             EEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence            456899999999999999997789999999999999875 444553 234567889999987766543        12  


Q ss_pred             ---CeEEEECCChHHHHHHHHHHhCC-------------CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCe
Q 018652           72 ---KKVVVVGGGYIGMEVAAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  135 (352)
Q Consensus        72 ---~~vvVvGgG~~g~e~A~~l~~~g-------------~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~  135 (352)
                         ..++|+|||++|+|+|.+|+++-             .+|+++++.+++++ .+++.+++..++.|++.||++++++.
T Consensus       153 ~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-~~~~~l~~~a~~~L~~~GV~v~l~~~  231 (405)
T COG1252         153 RALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-MFPPKLSKYAERALEKLGVEVLLGTP  231 (405)
T ss_pred             cceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-CCCHHHHHHHHHHHHHCCCEEEcCCc
Confidence               26999999999999999987542             38999999999998 59999999999999999999999999


Q ss_pred             EEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCCCCCchhhhh-cCCccc-CCcEEeCCCCCC-CCCCEEEeccccccC
Q 018652          136 IKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFP  211 (352)
Q Consensus       136 v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~~~t-~~~~Iya~GD~a~~~  211 (352)
                      |++++++      .|.+++|+ +|++|.+||++|.+++ +++++ .+++.+ .|++.||+++++ ++|+|||+|||+..+
T Consensus       232 Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~  304 (405)
T COG1252         232 VTEVTPD------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVI  304 (405)
T ss_pred             eEEECCC------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCC
Confidence            9999864      67888888 4999999999999998 67777 477766 589999999997 899999999999887


Q ss_pred             CccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCeee
Q 018652          212 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY  253 (352)
Q Consensus       212 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~p~~~  253 (352)
                      .+    .......+.|.+||..+|+||.... ...+..||.+
T Consensus       305 ~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l-~g~~l~~f~y  341 (405)
T COG1252         305 DP----RPVPPTAQAAHQQGEYAAKNIKARL-KGKPLKPFKY  341 (405)
T ss_pred             CC----CCCCChhHHHHHHHHHHHHHHHHHh-cCCCCCCCcc
Confidence            64    1112255679999999999997532 2233445543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=2.4e-33  Score=272.49  Aligned_cols=314  Identities=20%  Similarity=0.313  Sum_probs=224.9

Q ss_pred             CceEEEEC--CCcEEEeC--CCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652            5 DPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG   80 (352)
Q Consensus         5 ~~V~~id~--~~~~V~~~--~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG   80 (352)
                      .++..+++  +.++|.+.  ++++++||+||||||++|+.+|.++   .++...+.    ++.+......+++++|||+|
T Consensus       120 g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~~---~~~~~~~~----~~~~~~~~~~~~~vvVvGgG  192 (475)
T PRK06327        120 GRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVP---FDNKIILD----NTGALNFTEVPKKLAVIGAG  192 (475)
T ss_pred             EEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCCC---CCCceEEC----cHHHhcccccCCeEEEECCC
Confidence            34444552  35667664  3467999999999999986444322   22222221    12222223457999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC--C--C
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--S  156 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~--g--~  156 (352)
                      ++|+|+|..|++.|.+||++++.+++++. +++++...+.+.|++.||++++++++++++..++ .+ .+.+.+  |  +
T Consensus       193 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~  269 (475)
T PRK06327        193 VIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GV-SVAYTDADGEAQ  269 (475)
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EE-EEEEEeCCCcee
Confidence            99999999999999999999999988874 7899999999999999999999999999985433 22 344433  3  4


Q ss_pred             EEEcCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          157 TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       157 ~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      ++++|.+++++|.+|++++  ++.++++.+ +|++.||++++|+.|+|||+|||+..+.          ....|..+|..
T Consensus       270 ~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~~----------~~~~A~~~G~~  339 (475)
T PRK06327        270 TLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM----------LAHKAEEEGVA  339 (475)
T ss_pred             EEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCcc----------hHHHHHHHHHH
Confidence            6999999999999999884  466787765 5779999999999999999999987432          44569999999


Q ss_pred             HHHHHhcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------EE-------------EEcCCCCcEEEEE
Q 018652          234 CIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-------------EIGNFDPKIATFW  292 (352)
Q Consensus       234 aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-------------~~~~~~~~~~~~~  292 (352)
                      +|++|.+... ..+..+|+......+         +..+|....+       ..             ..+. ..-|.++.
T Consensus       340 aa~~i~g~~~~~~~~~~p~~~~~~pe---------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv  409 (475)
T PRK06327        340 VAERIAGQKGHIDYNTIPWVIYTSPE---------IAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGE-PDGFVKII  409 (475)
T ss_pred             HHHHHcCCCCCCCCCCCCeEEeCCcc---------eEEEeCCHHHHHHcCCCEEEEEEcccccchhhhcCC-CCeEEEEE
Confidence            9999986432 234555654321111         3333432211       00             0111 12355665


Q ss_pred             EE--CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCCc
Q 018652          293 ID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       293 ~~--~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      ++  +++|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|.++.|++.+..
T Consensus       410 ~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~  470 (475)
T PRK06327        410 ADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDK  470 (475)
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHHHhcc
Confidence            54  68999999988888877654 5567999999883 3 67999999999999876543

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=1.9e-33  Score=272.84  Aligned_cols=316  Identities=21%  Similarity=0.288  Sum_probs=226.5

Q ss_pred             ceEEEECCCcEEEeCCC-eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHH
Q 018652            6 PVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGM   84 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~g-~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~   84 (352)
                      ++..+++....+...+| .++.||+||||||++|+.+| .+ ...++. .+.+..+..   .....+++++|||+|++|+
T Consensus       110 ~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~~~-~~~~~~~~~---~~~~~~~~vvViGgG~~g~  183 (461)
T TIGR01350       110 EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFDGE-VVITSTGAL---NLKEVPESLVIIGGGVIGI  183 (461)
T ss_pred             EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCCCc-eEEcchHHh---ccccCCCeEEEECCCHHHH
Confidence            34445555455555554 47999999999999987433 33 112332 222333332   2233578999999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCE
Q 018652           85 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADT  162 (352)
Q Consensus        85 e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~  162 (352)
                      |+|..|++.|.+|+++++.+++++ .+++++...+.+.+++.||++++++.+.+++..+ +.+ .+.+.+|  +++++|.
T Consensus       184 e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~i~~D~  260 (461)
T TIGR01350       184 EFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYENKGGETETLTGEK  260 (461)
T ss_pred             HHHHHHHHcCCcEEEEEcCCCCCC-CCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEeCCcEEEEEeCE
Confidence            999999999999999999998887 4889999999999999999999999999997543 333 3555666  4799999


Q ss_pred             EEEccCCCCCch--hhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          163 IVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       163 vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      +|+++|.+|++.  ++++.++..+ +|++.||++++|+.|+|||+|||+..+.          .+..|..+|+.+|++|.
T Consensus       261 vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~  330 (461)
T TIGR01350       261 VLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPM----------LAHVASHEGIVAAENIA  330 (461)
T ss_pred             EEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHc
Confidence            999999999988  5788888876 5779999999999999999999987432          45669999999999998


Q ss_pred             cCCCCC--CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cE--EEE----------cCCCCcEEEEEEE--CC
Q 018652          240 SAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFDPKIATFWID--SG  296 (352)
Q Consensus       240 ~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~----------~~~~~~~~~~~~~--~~  296 (352)
                      +.....  +...|+......+         +...|....       +.  ...          .+...-+.++.++  ++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~---------~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~  401 (461)
T TIGR01350       331 GKEPAPIDYDAVPSCIYTDPE---------VASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTG  401 (461)
T ss_pred             CCCCCCCCCCCCCeEEecCCc---------eEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEEEEECCCC
Confidence            643313  3344543211111         222332211       00  000          0011235555554  58


Q ss_pred             EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCcc
Q 018652          297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPVE  349 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~  349 (352)
                      +|+|+++++.++.++... ..+|+.+.++++ .. +..||+++|.+..+++.+...
T Consensus       402 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~  457 (461)
T TIGR01350       402 EILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAALAALGK  457 (461)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHHHhccC
Confidence            999999888888777654 456799999988 22 678999999999999876543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-35  Score=264.53  Aligned_cols=319  Identities=22%  Similarity=0.355  Sum_probs=254.8

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCC---CCCCcEEEecCHHHHHHHHHhhcCCCeEEEEC
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDVADADALISSLEKAKKVVVVG   78 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g---~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG   78 (352)
                      +.+.+|+.||.+.+.|++.||.+|.||+++||||.+|+.++.+..   +-...+.+++...|.+++...+...++|.|||
T Consensus       275 l~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiG  354 (659)
T KOG1346|consen  275 LRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIG  354 (659)
T ss_pred             EeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEc
Confidence            456789999999999999999999999999999999988765422   22456788999999999988888889999999


Q ss_pred             CChHHHHHHHHHHh----CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652           79 GGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  154 (352)
Q Consensus        79 gG~~g~e~A~~l~~----~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~  154 (352)
                      +|++|.|+|+.|.+    .|.+|+-+......+..++++-++++-.+.+++.||.++.|..|.++..... . ..+++.|
T Consensus       355 nGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~-n-l~lkL~d  432 (659)
T KOG1346|consen  355 NGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK-N-LVLKLSD  432 (659)
T ss_pred             CcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc-c-eEEEecC
Confidence            99999999999976    4678888888777787888899999999999999999999999999875432 2 3688999


Q ss_pred             CCEEEcCEEEEccCCCCCchhhhhcCCccc--CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHH
Q 018652          155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  232 (352)
Q Consensus       155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~  232 (352)
                      |.++..|+|++|+|..||+++++..||+.|  -|++.||..|+.. .|||++||++.+.+..+|++ |++||.+|.-.|+
T Consensus       433 G~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGrR-RVehhdhavvSGR  510 (659)
T KOG1346|consen  433 GSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGRR-RVEHHDHAVVSGR  510 (659)
T ss_pred             CCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhcccccce-eccccccceeece
Confidence            999999999999999999999999999986  4899999999874 79999999999999888774 5889999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCeeeeeccCcCCCCc----ceeeEEee---cCc-----ccE----------------------
Q 018652          233 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFG---DNV-----GET----------------------  278 (352)
Q Consensus       233 ~aa~~i~~~~~~~~~~~p~~~~~~~~~~g~~~----~~~~~~~G---~~~-----~~~----------------------  278 (352)
                      .|+.||.+ ...||.....||++.-..-|...    ...+.-+|   ...     .++                      
T Consensus       511 LAGENMtg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~  589 (659)
T KOG1346|consen  511 LAGENMTG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSESSDTDVPETSTSSSQSSKSD  589 (659)
T ss_pred             eccccccc-ccCCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhhccCCCCcccccccccccccc
Confidence            99999985 56788888899997543211100    00000000   000     000                      


Q ss_pred             -------E----EEcCCCCcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHhCCCCCCh
Q 018652          279 -------I----EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK  326 (352)
Q Consensus       279 -------~----~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (352)
                             +    ..+.-.++-+.||++|++|||+++ .|-=..+...+.+|..+...++
T Consensus       590 ~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~dd  647 (659)
T KOG1346|consen  590 AGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYDD  647 (659)
T ss_pred             CCcCCCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchhh
Confidence                   0    000001366889999999999997 5655688899999988887766

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=2.2e-33  Score=272.24  Aligned_cols=301  Identities=23%  Similarity=0.343  Sum_probs=217.8

Q ss_pred             cEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652           15 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV   91 (352)
Q Consensus        15 ~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~   91 (352)
                      +.+.+ +++++.||+||||||++   .|.+||..   ..++++   ..+.   ......+++++|||+|++|+|+|..|+
T Consensus       120 ~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~~~~---~~~~---~~~~~~~k~v~VIGgG~~g~E~A~~l~  189 (460)
T PRK06292        120 NTVEV-NGERIEAKNIVIATGSR---VPPIPGVWLILGDRLLT---SDDA---FELDKLPKSLAVIGGGVIGLELGQALS  189 (460)
T ss_pred             CEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCcccCCCcEEC---chHH---hCccccCCeEEEECCCHHHHHHHHHHH
Confidence            45555 67789999999999998   23334431   223322   2222   222346799999999999999999999


Q ss_pred             hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCC
Q 018652           92 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGA  169 (352)
Q Consensus        92 ~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~  169 (352)
                      ++|.+|+++++.+++++ .+++++...+++.++++ |++++++.+.+++..++..+ .+++.++  +++++|.+++++|.
T Consensus       190 ~~g~~Vtli~~~~~~l~-~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~  266 (460)
T PRK06292        190 RLGVKVTVFERGDRILP-LEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGR  266 (460)
T ss_pred             HcCCcEEEEecCCCcCc-chhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCC
Confidence            99999999999998887 48899999999999999 99999999999975432122 2323333  57999999999999


Q ss_pred             CCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--
Q 018652          170 KPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--  244 (352)
Q Consensus       170 ~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--  244 (352)
                      +|++++  ++.++++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|.||++....  
T Consensus       267 ~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~~----------~~~~A~~qg~~aa~~i~~~~~~~~  336 (460)
T PRK06292        267 RPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPP----------LLHEAADEGRIAAENAAGDVAGGV  336 (460)
T ss_pred             ccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCcc----------chhHHHHHHHHHHHHhcCCCCCCc
Confidence            999984  577888765 5779999999999999999999997532          3456999999999999863222  


Q ss_pred             CCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EE-----------EcCCCCcEEEEEEE--CCEEEEEE
Q 018652          245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGNFDPKIATFWID--SGKLKGVL  302 (352)
Q Consensus       245 ~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~~~~~~~~~~~~--~~~v~g~~  302 (352)
                      .+..+|+.   .|...      .+..+|....+       .  ..           .+. ..-+.++.++  +++|+|++
T Consensus       337 ~~~~~p~~---~~~~~------~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~d~~~~~ilG~~  406 (460)
T PRK06292        337 RYHPIPSV---VFTDP------QIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGK-NDGFVKVYADKKTGRLLGAH  406 (460)
T ss_pred             CCCCCCeE---EECCC------ccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCC-CCeEEEEEEECCCCEEEEEE
Confidence            23445543   23211      03334443211       0  00           111 1235556554  48999999


Q ss_pred             eecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652          303 VESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       303 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      +++.++.++... ..+|+.+.++++ .. .+.||+++|++..+++.+..
T Consensus       407 ~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~  455 (460)
T PRK06292        407 IIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRDLFS  455 (460)
T ss_pred             EECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHHhh
Confidence            988888777644 556799999988 33 67999999999999887643

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=6e-34  Score=272.88  Aligned_cols=237  Identities=22%  Similarity=0.318  Sum_probs=191.3

Q ss_pred             ccCCceEEEECCCcEEEe----------CCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--
Q 018652            2 IYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--   69 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~----------~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--   69 (352)
                      +++++|++||++++.|.+          ++|.+++||+||||||+.|.. +.+||.. +.++.++++.++..+++.+.  
T Consensus        79 ~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~-~~ipG~~-e~~~~~~~~~~a~~~~~~l~~~  156 (424)
T PTZ00318         79 YLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT-FNIPGVE-ERAFFLKEVNHARGIRKRIVQC  156 (424)
T ss_pred             EEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCC-CCCCCHH-HcCCCCCCHHHHHHHHHHHHHH
Confidence            456799999999999988          567789999999999999864 5566643 34567788888776654321  


Q ss_pred             ---------------CCCeEEEECCChHHHHHHHHHHh--------------CCCcEEEEecCCcccccccCHHHHHHHH
Q 018652           70 ---------------KAKKVVVVGGGYIGMEVAAAAVG--------------WKLDTTIIFPENHLLQRLFTPSLAQRYE  120 (352)
Q Consensus        70 ---------------~~~~vvVvGgG~~g~e~A~~l~~--------------~g~~Vtvv~~~~~~~~~~~~~~~~~~l~  120 (352)
                                     ..++++|||+|++|+|+|..|++              .+.+|+++++++++++ .+++.+.+.++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~~~~~~~~~~  235 (424)
T PTZ00318        157 IERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQALRKYGQ  235 (424)
T ss_pred             HHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cCCHHHHHHHH
Confidence                           12489999999999999999875              3689999999999987 58999999999


Q ss_pred             HHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCC-CCC
Q 018652          121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFR-TRM  198 (352)
Q Consensus       121 ~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~-t~~  198 (352)
                      +.|++.||++++++.++++..+      .+.+++|+++++|.+|+++|.+|+ ++++.++++.+ +|+|.||++|| +++
T Consensus       236 ~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~  308 (424)
T PTZ00318        236 RRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPI  308 (424)
T ss_pred             HHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCC
Confidence            9999999999999999999743      467889999999999999999998 67888888765 68999999999 599


Q ss_pred             CCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCeee
Q 018652          199 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY  253 (352)
Q Consensus       199 ~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~p~~~  253 (352)
                      |||||+|||+..+....     ...+..|++||..+|+||...........||.+
T Consensus       309 ~~IfAiGD~a~~~~~~~-----~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~  358 (424)
T PTZ00318        309 PNVFALGDCAANEERPL-----PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY  358 (424)
T ss_pred             CCEEEEeccccCCCCCC-----CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence            99999999998754221     125677999999999999753222113456654

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=3.8e-33  Score=271.86  Aligned_cols=301  Identities=19%  Similarity=0.232  Sum_probs=213.7

Q ss_pred             CCcEEEeCC---CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHH
Q 018652           13 EKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA   89 (352)
Q Consensus        13 ~~~~V~~~~---g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~   89 (352)
                      +.++|.+.+   +..++||+||||||+.|+.++.++|...    ...+   .+.+......+++++|||+|++|+|+|..
T Consensus       128 ~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G~~~----~~~~---~~~~~~~~~~~~~vvIIGgG~iG~E~A~~  200 (499)
T PTZ00052        128 DEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKE----YSIT---SDDIFSLSKDPGKTLIVGASYIGLETAGF  200 (499)
T ss_pred             cCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCCccc----eeec---HHHHhhhhcCCCeEEEECCCHHHHHHHHH
Confidence            345665532   3579999999999999864333555321    1112   22333333457899999999999999999


Q ss_pred             HHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652           90 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus        90 l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                      |+++|.+||++++. .+++ .+++++++.+++.|++.||++++++.+.+++..+ +. ..+.+.+|+++++|.|++++|.
T Consensus       201 l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~  276 (499)
T PTZ00052        201 LNELGFDVTVAVRS-IPLR-GFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGR  276 (499)
T ss_pred             HHHcCCcEEEEEcC-cccc-cCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCC
Confidence            99999999999874 5665 5899999999999999999999999999997543 22 3567778889999999999999


Q ss_pred             CCCchhh--hhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--
Q 018652          170 KPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--  244 (352)
Q Consensus       170 ~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--  244 (352)
                      +||++++  ++++++.+ +|++.+++. +|+.|+|||+|||+....         ..+..|.++|+.+|+||++....  
T Consensus       277 ~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~  346 (499)
T PTZ00052        277 KPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFI  346 (499)
T ss_pred             CCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcC
Confidence            9999875  57788775 466777766 999999999999986321         15567999999999999864322  


Q ss_pred             CCCCCCeeeeeccCcCCCCcceeeEEeecCcc---------------------------cEEEEcC---------CCCcE
Q 018652          245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------------------------ETIEIGN---------FDPKI  288 (352)
Q Consensus       245 ~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---------------------------~~~~~~~---------~~~~~  288 (352)
                      .+..+|+.......         +..+|....                           .....+.         ...-|
T Consensus       347 ~~~~~p~~ift~p~---------ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  417 (499)
T PTZ00052        347 DYTFIPTTIFTPIE---------YGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCL  417 (499)
T ss_pred             ccccCCeEEecCCc---------ceeecCCHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCce
Confidence            34445654322111         222221110                           0000000         01235


Q ss_pred             EEEEEE---CCEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh-hh-hcCCCchHHHHHHHH
Q 018652          289 ATFWID---SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK-LQQASSVEEALEIAR  343 (352)
Q Consensus       289 ~~~~~~---~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~  343 (352)
                      .++.++   +++|+|+++++.++.++...- .+|+++.++++ .. ++.||+++|++..+.
T Consensus       418 ~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~  478 (499)
T PTZ00052        418 AKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMNLS  478 (499)
T ss_pred             EEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEEEE
Confidence            555443   599999999888898887555 45699999888 33 689999999876543

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.2e-32  Score=265.33  Aligned_cols=300  Identities=18%  Similarity=0.229  Sum_probs=214.9

Q ss_pred             CCcEEEeCC---CeEEecCeEEEccCCCCCCCCCCCCC-CCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHH
Q 018652           13 EKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA   88 (352)
Q Consensus        13 ~~~~V~~~~---g~~~~yd~lViAtG~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~   88 (352)
                      ++++|.+.+   ...+.||+||||||++|+. |++||. ..+++++      +..+......+++++|||+|++|+|+|.
T Consensus       102 ~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~~------~~~~~~~~~~~~~vvIIGgG~~g~e~A~  174 (438)
T PRK07251        102 SNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVYD------STGIQSLETLPERLGIIGGGNIGLEFAG  174 (438)
T ss_pred             cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEEc------hHHHhcchhcCCeEEEECCCHHHHHHHH
Confidence            356665543   2469999999999999864 556664 2344443      2233333346789999999999999999


Q ss_pred             HHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652           89 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  168 (352)
Q Consensus        89 ~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  168 (352)
                      .|++.|.+|++++++++++++ .++++...+.+.++++||++++++++++++.+ ++.+ .+. .+++++++|.+|+++|
T Consensus       175 ~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v-~v~-~~g~~i~~D~viva~G  250 (438)
T PRK07251        175 LYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKND-GDQV-LVV-TEDETYRFDALLYATG  250 (438)
T ss_pred             HHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEE-EEE-ECCeEEEcCEEEEeeC
Confidence            999999999999999999875 68899999999999999999999999999853 2322 233 4567899999999999


Q ss_pred             CCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--
Q 018652          169 AKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--  243 (352)
Q Consensus       169 ~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~--  243 (352)
                      .+|+++.  ++..++..+ +|++.||+++||+.|+|||+|||+..+.          ....|..+|+.++.++.+...  
T Consensus       251 ~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~  320 (438)
T PRK07251        251 RKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ----------FTYISLDDFRIVFGYLTGDGSYT  320 (438)
T ss_pred             CCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCcc
Confidence            9999875  345666654 5789999999999999999999986432          222378889999998886432  


Q ss_pred             -CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------EE-------------EEcCCCCcEEEEEEE--CCEEEE
Q 018652          244 -HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-------------EIGNFDPKIATFWID--SGKLKG  300 (352)
Q Consensus       244 -~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-------------~~~~~~~~~~~~~~~--~~~v~g  300 (352)
                       ..+..+|+.  ..++..       +...|....+       ..             ..++. ..+.++.++  +++|+|
T Consensus       321 ~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~kli~d~~~~~ilG  390 (438)
T PRK07251        321 LEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDL-RGAFKVVVNTETKEILG  390 (438)
T ss_pred             ccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCC-cEEEEEEEECCCCEEEE
Confidence             123345543  112111       2333332110       00             01111 125566553  589999


Q ss_pred             EEeecCCHHHhhHH-HHHHhCCCCCCh--hhhcCCCchHHHHHHHH
Q 018652          301 VLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIAR  343 (352)
Q Consensus       301 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~e~~~~~~  343 (352)
                      +++++.++.++... ..+|+.+.+++.  ..++.||+++|.+..+-
T Consensus       391 ~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  436 (438)
T PRK07251        391 ATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF  436 (438)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence            99988888887755 455689998888  23689999999988764

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=2.4e-31  Score=250.63  Aligned_cols=222  Identities=25%  Similarity=0.320  Sum_probs=180.5

Q ss_pred             cCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHH----HHHhh---cCCCeEE
Q 018652            3 YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---EKAKKVV   75 (352)
Q Consensus         3 ~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~----~~~~~---~~~~~vv   75 (352)
                      +.++|++||+++++|.+++|++++||+||||||+.|. .|.+|| ..++++.+++.+++..    +....   ..+++++
T Consensus        72 ~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~-~~~i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv  149 (364)
T TIGR03169        72 VIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP-LSGVEG-AADLAVPVKPIENFLARWEALLESADAPPGTKRLA  149 (364)
T ss_pred             EEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC-CCCCCc-ccccccccCCHHHHHHHHHHHHHHHhcCCCCceEE
Confidence            4568999999999999999988999999999999986 466666 3566777787777655    33322   2457999


Q ss_pred             EECCChHHHHHHHHHHh----CC--CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           76 VVGGGYIGMEVAAAAVG----WK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        76 VvGgG~~g~e~A~~l~~----~g--~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      |+|+|++|+|+|..|.+    +|  .+|+++ ..+.+++. +++.+...+++.+++.||++++++.+++++.+      .
T Consensus       150 VvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~  221 (364)
T TIGR03169       150 VVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG------A  221 (364)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC------e
Confidence            99999999999999975    34  589999 56667663 78889999999999999999999999999632      4


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCC-CCCCEEEeccccccCCccCCcccccccHHHH
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  227 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t-~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A  227 (352)
                      +.+.+|+++++|.+|+++|.+|+ .++...++..+ +|++.||+++|| +.|+|||+|||+..+.....     .....|
T Consensus       222 v~~~~g~~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~-----~~~~~A  295 (364)
T TIGR03169       222 LILADGRTLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRP-----KAGVYA  295 (364)
T ss_pred             EEeCCCCEEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCC-----CchHHH
Confidence            67788999999999999999998 46666777764 588999999998 99999999999986543221     244569


Q ss_pred             HHHHHHHHHHHhc
Q 018652          228 RQSAQHCIKALLS  240 (352)
Q Consensus       228 ~~~g~~aa~~i~~  240 (352)
                      ..||+.+|+||..
T Consensus       296 ~~~g~~~a~ni~~  308 (364)
T TIGR03169       296 VRQAPILAANLRA  308 (364)
T ss_pred             HHhHHHHHHHHHH
Confidence            9999999999974

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.8e-31  Score=237.77  Aligned_cols=310  Identities=22%  Similarity=0.402  Sum_probs=227.3

Q ss_pred             ECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHH
Q 018652           11 DIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA   88 (352)
Q Consensus        11 d~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~   88 (352)
                      +|..-++.-.||  ..+.++++||||||.-.   +.||..+++-....    +...+...+-+++++|||+|.+|+|++.
T Consensus       156 ~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~---~~PGI~IDekkIVS----StgALsL~~vPk~~~viG~G~IGLE~gs  228 (506)
T KOG1335|consen  156 DPNKVSVKKIDGEDQIIKAKNIIIATGSEVT---PFPGITIDEKKIVS----STGALSLKEVPKKLTVIGAGYIGLEMGS  228 (506)
T ss_pred             CCceEEEeccCCCceEEeeeeEEEEeCCccC---CCCCeEecCceEEe----cCCccchhhCcceEEEEcCceeeeehhh
Confidence            344444555555  46899999999999632   23454444422221    1122222346899999999999999999


Q ss_pred             HHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---C--CEEEcCEE
Q 018652           89 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTI  163 (352)
Q Consensus        89 ~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~v  163 (352)
                      -..++|.+||+++..+.+.+. ++++++..+++.|.+.|++|.+++++...+++.++.+ .+++.+   +  ++++||.+
T Consensus       229 V~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~Dvl  306 (506)
T KOG1335|consen  229 VWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVL  306 (506)
T ss_pred             HHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEE
Confidence            999999999999999999885 9999999999999999999999999999998777643 344432   3  47999999


Q ss_pred             EEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          164 VIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       164 i~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ++++|++|-+.-  +++.|++.| ++++.+|..++|.+|+||++|||...|..          ...|..+|..+.+.|.+
T Consensus       307 LVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g  376 (506)
T KOG1335|consen  307 LVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAG  376 (506)
T ss_pred             EEEccCcccccCCChhhcccccccccceeccccccccCCceEEecccCCcchh----------hhhhhhhchhheeeecc
Confidence            999999998764  567788776 67899999999999999999999987652          23388899888888876


Q ss_pred             CC-CCCCCCCCeeeeeccCcCCCCcceeeEEeecCcccE------EEEcCC-------------CCcEEEEEE--ECCEE
Q 018652          241 AQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET------IEIGNF-------------DPKIATFWI--DSGKL  298 (352)
Q Consensus       241 ~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~------~~~~~~-------------~~~~~~~~~--~~~~v  298 (352)
                      +. ...|.-+|-   ..|.++-      +.|+|..+.++      +..|.+             ...|.+...  ++++|
T Consensus       377 ~~~hv~ynciP~---v~ythPE------vawVG~TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdki  447 (506)
T KOG1335|consen  377 GHGHVDYNCIPS---VVYTHPE------VAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKI  447 (506)
T ss_pred             cCcccccCCCCc---eeecccc------eeeeccchhhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcE
Confidence            54 345665663   3333321      33355443211      111211             123555444  46999


Q ss_pred             EEEEeecCCHHHhhHHHHH-HhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652          299 KGVLVESGSPEEFQLLPTL-ARSQPFVDK-AK-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       299 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      +|++++++.+.++.+-..+ +..+...++ +. .+.||+++|++++|..+++.
T Consensus       448 LGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~~  500 (506)
T KOG1335|consen  448 LGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYD  500 (506)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHhhc
Confidence            9999999999998865544 578888888 33 59999999999999988765

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.97  E-value=1.6e-28  Score=234.72  Aligned_cols=253  Identities=30%  Similarity=0.376  Sum_probs=214.9

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +.+++|+.||++++.|.+.+| ++.||+||+|||++|+..+   +...+++++++...+...+.......++++|+|+|+
T Consensus        71 ~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~  146 (415)
T COG0446          71 RTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGP  146 (415)
T ss_pred             eeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEECCcH
Confidence            467889999999999999999 7999999999999987544   555788999999999988887776679999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE-EEcCCCCEEEc
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGSTIDA  160 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~-v~~~~g~~i~~  160 (352)
                      +|+|+|..++++|++|++++..++++++.+.+++.+.+.+.++++||+++++..+.+++...+..... +...+++.+++
T Consensus       147 ~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  226 (415)
T COG0446         147 IGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKA  226 (415)
T ss_pred             HHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEe
Confidence            99999999999999999999999998853328899999999999999999999999998643322211 57788889999


Q ss_pred             CEEEEccCCCCCchhhhhcC--CcccCCcEEeCCCCCCC-CCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652          161 DTIVIGIGAKPTVSPFERVG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  237 (352)
Q Consensus       161 D~vi~a~G~~p~~~~~~~~g--l~~~~g~i~vd~~~~t~-~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~  237 (352)
                      |.+++++|.+||..+..+.+  +....|++.||+.++|+ .++|||+|||+..+....+.....++|+.|..+++.++.+
T Consensus       227 d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~  306 (415)
T COG0446         227 DLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAEN  306 (415)
T ss_pred             eEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHH
Confidence            99999999999977777765  44556789999999997 9999999999998776555556678999999999999999


Q ss_pred             HhcCCCCCCCCCCeeeeeccCc
Q 018652          238 LLSAQTHTYDYLPYFYSRVFEY  259 (352)
Q Consensus       238 i~~~~~~~~~~~p~~~~~~~~~  259 (352)
                      +.+. ......+++.|.+++++
T Consensus       307 ~~~~-~~~~~~~~~~~~~~~~~  327 (415)
T COG0446         307 IAGA-LRIPGLLGTVISDVGDL  327 (415)
T ss_pred             hccc-cccccccCceEEEEcCe
Confidence            9865 33345678888888865

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=1.2e-28  Score=217.33  Aligned_cols=298  Identities=23%  Similarity=0.319  Sum_probs=211.6

Q ss_pred             EECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHH
Q 018652           10 IDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA   87 (352)
Q Consensus        10 id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A   87 (352)
                      +++.+-.|...||+  .+++.+++||||.+|. .|.+||..+     -   .|++.+.+....++|++|+|+|++++|+|
T Consensus       135 ~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIpG~E~-----g---idSDgff~Lee~Pkr~vvvGaGYIavE~A  205 (478)
T KOG0405|consen  135 VSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIPGAEL-----G---IDSDGFFDLEEQPKRVVVVGAGYIAVEFA  205 (478)
T ss_pred             cCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCCchhh-----c---cccccccchhhcCceEEEEccceEEEEhh
Confidence            34555577777774  3799999999999986 566666432     1   12344444456899999999999999999


Q ss_pred             HHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652           88 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  167 (352)
Q Consensus        88 ~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  167 (352)
                      ..++.+|.+++++.|.+.++. .|++.+++.+.+.++.+||+++.++.++++.+..++... +....|....+|.++|++
T Consensus       206 gi~~gLgsethlfiR~~kvLR-~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAi  283 (478)
T KOG0405|consen  206 GIFAGLGSETHLFIRQEKVLR-GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAI  283 (478)
T ss_pred             hHHhhcCCeeEEEEecchhhc-chhHHHHHHHHHHhhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEe
Confidence            999999999999999999995 699999999999999999999999999999887666543 344555555699999999


Q ss_pred             CCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-
Q 018652          168 GAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-  243 (352)
Q Consensus       168 G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-  243 (352)
                      |+.||+.-  +++.|++.+ .|.|.||++-+||+|+||++||++.--          ..-+.|...|+.++..+.+... 
T Consensus       284 GR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~~  353 (478)
T KOG0405|consen  284 GRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGKD  353 (478)
T ss_pred             cCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCCC
Confidence            99999864  678888876 577999999999999999999998743          2445699999999999987322 


Q ss_pred             --CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEE------------EcCCCCcEEEEEE--ECCEE
Q 018652          244 --HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE------------IGNFDPKIATFWI--DSGKL  298 (352)
Q Consensus       244 --~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~------------~~~~~~~~~~~~~--~~~~v  298 (352)
                        ..|..+|-   .+|..+-      +-.+|..+.|         +..            .+..+.-+.++..  +++++
T Consensus       354 ~kldY~nVp~---vVFshP~------igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKV  424 (478)
T KOG0405|consen  354 TKLDYENVPC---VVFSHPP------IGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKV  424 (478)
T ss_pred             CccccccCce---EEEecCC------cccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcE
Confidence              34666774   3333221      1122222211         111            1111122333333  57999


Q ss_pred             EEEEeecCCHHHhhHHHH-HHhCCCCCCh--hhhcCCCchHH
Q 018652          299 KGVLVESGSPEEFQLLPT-LARSQPFVDK--AKLQQASSVEE  337 (352)
Q Consensus       299 ~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~e  337 (352)
                      +|+++++..+.++..-.. +++.+.+-.+  .-+..||+-.|
T Consensus       425 vG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAE  466 (478)
T KOG0405|consen  425 VGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAE  466 (478)
T ss_pred             EEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHH
Confidence            999998877777654333 3344443222  22455555443

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.96  E-value=5.5e-27  Score=214.80  Aligned_cols=209  Identities=24%  Similarity=0.361  Sum_probs=161.1

Q ss_pred             CceEEEECCCc--EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            5 DPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         5 ~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      ++|++|+++++  .|.++++..+.||+||+|||+.|+. |.+||..   ..++++.....      .....+++++|||+
T Consensus        77 ~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~-~~i~g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~  149 (300)
T TIGR01292        77 EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARK-LGIPGEDEFLGRGVSYCATCD------GPFFKNKEVAVVGG  149 (300)
T ss_pred             EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCccc-CCCCChhhcCCccEEEeeecC------hhhcCCCEEEEECC
Confidence            78999998765  6677778889999999999999863 5555532   13444332211      12346789999999


Q ss_pred             ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcC---CC
Q 018652           80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE---DG  155 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g  155 (352)
                      |.+|+|+|..|++.+.+|+++++.+.+..       ...+.+.+++. ||++++++.+.+++.+  +.+..+.+.   ++
T Consensus       150 G~~~~e~a~~l~~~~~~V~~v~~~~~~~~-------~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g  220 (300)
T TIGR01292       150 GDSAIEEALYLTRIAKKVTLVHRRDKFRA-------EKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTG  220 (300)
T ss_pred             ChHHHHHHHHHHhhcCEEEEEEeCcccCc-------CHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEecCCC
Confidence            99999999999999999999998875431       23455667777 9999999999999853  243344432   23


Q ss_pred             --CEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHH
Q 018652          156 --STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  232 (352)
Q Consensus       156 --~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~  232 (352)
                        +++++|.+++|+|++|+.++++.+ +..+ +|++.||++++|++|+||++|||+....         ..+..|+.+|+
T Consensus       221 ~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~  290 (300)
T TIGR01292       221 EEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY---------RQAVTAAGDGC  290 (300)
T ss_pred             ceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcch---------hhhhhhhhhHH
Confidence              579999999999999999888776 5544 5789999999999999999999997421         15667999999


Q ss_pred             HHHHHHh
Q 018652          233 HCIKALL  239 (352)
Q Consensus       233 ~aa~~i~  239 (352)
                      .+|++|.
T Consensus       291 ~aa~~i~  297 (300)
T TIGR01292       291 IAALSAE  297 (300)
T ss_pred             HHHHHHH
Confidence            9999986

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK10262 thioredoxin reductase; Provisional

Probab=99.95  E-value=3.7e-27  Score=218.34  Aligned_cols=214  Identities=20%  Similarity=0.282  Sum_probs=158.3

Q ss_pred             CceEEEECCCcEEEeC-CCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652            5 DPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGGG   80 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~-~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG   80 (352)
                      .+|++|+..++.+++. +...+.||+||||||+.|+. |++||.+   ..+++++...      ......+++++|||+|
T Consensus        83 ~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~-~~i~g~~~~~~~~v~~~~~~------~~~~~~g~~vvVvGgG  155 (321)
T PRK10262         83 DHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACATC------DGFFYRNQKVAVIGGG  155 (321)
T ss_pred             eEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCC-CCCCCHHHcCCCcEEEeecC------CHHHcCCCEEEEECCC
Confidence            3567788766654332 23368999999999999864 5566632   3345444322      1223468999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-----
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----  155 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-----  155 (352)
                      ++|+|+|..|++.+.+|+++++.+.+.   .++...+.+.+.+++.||++++++.++++..+ ++.+..+++.++     
T Consensus       156 ~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~  231 (321)
T PRK10262        156 NTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDN  231 (321)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCe
Confidence            999999999999999999999987642   34667788888999999999999999999853 333445555432     


Q ss_pred             -CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCC-----CCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          156 -STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       156 -~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                       +++++|.|++++|.+||..++.. ++..++|+|.||+     +++|++|+|||+|||+..+..         .+..|+.
T Consensus       232 ~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~---------~~~~A~~  301 (321)
T PRK10262        232 IESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR---------QAITSAG  301 (321)
T ss_pred             EEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcc---------eEEEEeh
Confidence             37999999999999999887654 5666678899997     689999999999999975432         1122666


Q ss_pred             HHHHHHHHHh
Q 018652          230 SAQHCIKALL  239 (352)
Q Consensus       230 ~g~~aa~~i~  239 (352)
                      +|..||..|.
T Consensus       302 ~g~~Aa~~~~  311 (321)
T PRK10262        302 TGCMAALDAE  311 (321)
T ss_pred             hHHHHHHHHH
Confidence            6666666554

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.95  E-value=4.1e-27  Score=230.72  Aligned_cols=214  Identities=26%  Similarity=0.386  Sum_probs=163.1

Q ss_pred             ccCCceEEEECCC--cEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652            2 IYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVV   76 (352)
Q Consensus         2 ~~~~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvV   76 (352)
                      +.+++|++|+.+.  ..+.+++|+.+.||+||+|||++|+. +.++|..   .++++++...+      .....+++++|
T Consensus       285 ~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~~~~------~~~~~~k~VvV  357 (515)
T TIGR03140       285 MENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCPHCD------GPFFKGKDVAV  357 (515)
T ss_pred             EcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEeeccC------hhhcCCCEEEE
Confidence            4577899998765  46777788889999999999999864 5556631   24455443221      12346899999


Q ss_pred             ECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCC-
Q 018652           77 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-  154 (352)
Q Consensus        77 vGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-  154 (352)
                      ||||++|+|+|..|++.+.+||++++.+.+..       ...+.+.+++ .||++++++.++++..+ ++.+..+.+.+ 
T Consensus       358 iGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~  429 (515)
T TIGR03140       358 IGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDR  429 (515)
T ss_pred             ECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEEC
Confidence            99999999999999999999999998775532       2345666766 59999999999999743 34555566543 


Q ss_pred             --C--CEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          155 --G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       155 --g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                        |  +++++|.|++++|.+|++++++.. ++.+ +|+|.||+++||++|+|||+|||+..+..         .+..|+.
T Consensus       430 ~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~---------~~~~A~~  499 (515)
T TIGR03140       430 NSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYK---------QIIIAMG  499 (515)
T ss_pred             CCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccc---------eEEEEEc
Confidence              2  469999999999999999998776 6654 57899999999999999999999986542         1123777


Q ss_pred             HHHHHHHHHhc
Q 018652          230 SAQHCIKALLS  240 (352)
Q Consensus       230 ~g~~aa~~i~~  240 (352)
                      +|..||.++..
T Consensus       500 ~G~~Aa~~i~~  510 (515)
T TIGR03140       500 EGAKAALSAFD  510 (515)
T ss_pred             cHHHHHHHHHH
Confidence            77777777653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.95  E-value=1.2e-26  Score=223.69  Aligned_cols=199  Identities=26%  Similarity=0.348  Sum_probs=154.6

Q ss_pred             EecCeEEEccCC-CCCCCCCCCCCCCCcEEEecCHHHHHHHHH---------hhcCCCeEEEECCChHHHHHHHHHHhCC
Q 018652           25 LKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIGMEVAAAAVGWK   94 (352)
Q Consensus        25 ~~yd~lViAtG~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---------~~~~~~~vvVvGgG~~g~e~A~~l~~~g   94 (352)
                      ..||+||||||+ .|+ .+.+||.+.+++++..++.+...+..         ....+++|+|||+|++|+|+|..+.++|
T Consensus       217 ~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G  295 (449)
T TIGR01316       217 SQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLG  295 (449)
T ss_pred             hhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcC
Confidence            579999999998 565 45678888888877655443322211         1235789999999999999999999999


Q ss_pred             CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---------CC----------
Q 018652           95 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG----------  155 (352)
Q Consensus        95 ~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---------~g----------  155 (352)
                      .+||++.++++...   +.  .....+.+++.||++++++.++++..++++++..|++.         +|          
T Consensus       296 ~~Vtlv~~~~~~~~---~~--~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~  370 (449)
T TIGR01316       296 AEVHCLYRRTREDM---TA--RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDA  370 (449)
T ss_pred             CEEEEEeecCcccC---CC--CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCc
Confidence            99999998764211   11  12233567889999999999999976555666555442         22          


Q ss_pred             -CEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          156 -STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       156 -~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                       +++++|.||+++|..|++.+++..+++.+ +|+|.||++++|+.|+|||+|||+..+.          .+..|+.+|+.
T Consensus       371 ~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~----------~v~~Ai~~G~~  440 (449)
T TIGR01316       371 ECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA----------TVIRAMGQGKR  440 (449)
T ss_pred             eEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH----------HHHHHHHHHHH
Confidence             26999999999999999988888888875 5789999999999999999999986432          56679999999


Q ss_pred             HHHHHh
Q 018652          234 CIKALL  239 (352)
Q Consensus       234 aa~~i~  239 (352)
                      ||.+|.
T Consensus       441 AA~~I~  446 (449)
T TIGR01316       441 AAKSIN  446 (449)
T ss_pred             HHHHHH
Confidence            999986

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.94  E-value=1.4e-26  Score=209.81  Aligned_cols=223  Identities=23%  Similarity=0.361  Sum_probs=171.8

Q ss_pred             ccCCceEEEECCCcEEEeC----CC----eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc----
Q 018652            2 IYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE----   69 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~----~g----~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~----   69 (352)
                      +++++.+.||++++.|++.    ++    -.+.|||||+|+|+.+.. ..+||- .++.+.++..+|+++++..+.    
T Consensus       126 y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T-FgipGV-~e~~~FLKEv~dAqeIR~~~~~~le  203 (491)
T KOG2495|consen  126 YLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT-FGIPGV-EENAHFLKEVEDAQEIRRKVIDNLE  203 (491)
T ss_pred             EEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC-CCCCch-hhchhhhhhhhHHHHHHHHHHHHHH
Confidence            4678899999999988753    44    368999999999999875 444553 344466788888887754321    


Q ss_pred             -------------CCCeEEEECCChHHHHHHHHHHhC--------------CCcEEEEecCCcccccccCHHHHHHHHHH
Q 018652           70 -------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRLFTPSLAQRYEQL  122 (352)
Q Consensus        70 -------------~~~~vvVvGgG~~g~e~A~~l~~~--------------g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~  122 (352)
                                   .--++||||||++|+|+|.+|...              -.+||+++..+++++ +|+..+.++.+++
T Consensus       204 ~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-mFdkrl~~yae~~  282 (491)
T KOG2495|consen  204 KAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-MFDKRLVEYAENQ  282 (491)
T ss_pred             HhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-HHHHHHHHHHHHH
Confidence                         112699999999999999998643              367999999999997 6999999999999


Q ss_pred             HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCchhhhhcCCcc---cCCcEEeCCCCCC-
Q 018652          123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS---SVGGIQVDGQFRT-  196 (352)
Q Consensus       123 l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~---~~g~i~vd~~~~t-  196 (352)
                      +.+.||++.+++.|+.++..   . ..+...+|  +++++-+++|+||..|. ++.+.+.-..   ++.++.||++||. 
T Consensus       283 f~~~~I~~~~~t~Vk~V~~~---~-I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~  357 (491)
T KOG2495|consen  283 FVRDGIDLDTGTMVKKVTEK---T-IHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVK  357 (491)
T ss_pred             hhhccceeecccEEEeecCc---E-EEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeecc
Confidence            99999999999999998632   1 23444566  47999999999999886 3333332222   1458999999997 


Q ss_pred             CCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          197 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       197 ~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      +.+||||+|||+..+..       .+..+.|.+||.++|+++-
T Consensus       358 G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  358 GVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             CcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence            88999999999954432       2255679999999999884

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.94  E-value=1.8e-25  Score=227.47  Aligned_cols=224  Identities=24%  Similarity=0.317  Sum_probs=160.4

Q ss_pred             EEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEe-cCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC-C
Q 018652           17 LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW-K   94 (352)
Q Consensus        17 V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~-g   94 (352)
                      +.+++.+...||+||||||+++...+.++|.+ +++++. ..+.+..........+++|+|||||++|+|+|..+.+. |
T Consensus       614 i~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgG  692 (1019)
T PRK09853        614 LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPG  692 (1019)
T ss_pred             EEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCC
Confidence            34445555679999999999864444455543 444432 11122212223345689999999999999999998887 4


Q ss_pred             -CcEEEEecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecC--------------CCcEEEEEcCCCCEE
Q 018652           95 -LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--------------DGRVAAVKLEDGSTI  158 (352)
Q Consensus        95 -~~Vtvv~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~--------------~~~~~~v~~~~g~~i  158 (352)
                       .+|+++.++.. .++. .    ...+.+.+ +.||+++.++.+.++..+.              +++...+...+++++
T Consensus       693 akeVTLVyRr~~~~MPA-~----~eEle~Al-eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I  766 (1019)
T PRK09853        693 VEKVTVVYRRTKQEMPA-W----REEYEEAL-EDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTL  766 (1019)
T ss_pred             CceEEEEEccCcccccc-c----HHHHHHHH-HcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEE
Confidence             48999998763 3331 2    23344443 4799999998888886311              111122333444689


Q ss_pred             EcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652          159 DADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  237 (352)
Q Consensus       159 ~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~  237 (352)
                      ++|.||+|+|.+|+++++++.|++.+ +|++.||++++|+.|+|||+|||+..+.          .+..|+.+|+.||++
T Consensus       767 ~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~----------tvv~Ai~qGr~AA~n  836 (1019)
T PRK09853        767 EADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPS----------TIVAAIADARRAADA  836 (1019)
T ss_pred             EeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCch----------HHHHHHHHHHHHHHH
Confidence            99999999999999999998888765 5789999999999999999999986543          455799999999999


Q ss_pred             HhcCCCCCCCCCCeeeeecc
Q 018652          238 LLSAQTHTYDYLPYFYSRVF  257 (352)
Q Consensus       238 i~~~~~~~~~~~p~~~~~~~  257 (352)
                      |++.....+...|++|+..+
T Consensus       837 I~~~~~~~~~~~~~~~~~~~  856 (1019)
T PRK09853        837 ILSREGIRSHQNDKYWNNVE  856 (1019)
T ss_pred             HhhhcCCCcccccccccccc
Confidence            99766667777787777644

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.94  E-value=1.1e-25  Score=220.88  Aligned_cols=214  Identities=22%  Similarity=0.328  Sum_probs=162.9

Q ss_pred             ccCCceEEEECC--CcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652            2 IYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVV   76 (352)
Q Consensus         2 ~~~~~V~~id~~--~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvV   76 (352)
                      +++++|++|+++  ...|.+++|+.+.||+||+|||++|+. +.+||..   ..++++....+      .....+++|+|
T Consensus       284 ~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~~~~v~~~~~~~------~~~~~gk~VvV  356 (517)
T PRK15317        284 MNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYRNKGVAYCPHCD------GPLFKGKRVAV  356 (517)
T ss_pred             EcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhcCceEEEeeccC------chhcCCCEEEE
Confidence            457889999886  457777888889999999999999864 4555531   23455442211      12346899999


Q ss_pred             ECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcC--
Q 018652           77 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE--  153 (352)
Q Consensus        77 vGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~--  153 (352)
                      ||+|++|+|+|..|+..+.+|+++++.+.+..       ...+.+.+.+ .||++++++.+.++..+ ++.+..+.+.  
T Consensus       357 VGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------~~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~  428 (517)
T PRK15317        357 IGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-------DQVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDR  428 (517)
T ss_pred             ECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------cHHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEEC
Confidence            99999999999999999999999998876532       1345556665 59999999999999853 4555556554  


Q ss_pred             -CCC--EEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          154 -DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       154 -~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                       +|+  ++++|.+++++|.+|++++++.. +..+ +|+|.||+++||+.|+|||+|||+..+..         .+..|+.
T Consensus       429 ~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k---------~~~~A~~  498 (517)
T PRK15317        429 TTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYK---------QIIIAMG  498 (517)
T ss_pred             CCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCC---------EEEEhhh
Confidence             333  59999999999999999998776 6554 57899999999999999999999986543         2233777


Q ss_pred             HHHHHHHHHhc
Q 018652          230 SAQHCIKALLS  240 (352)
Q Consensus       230 ~g~~aa~~i~~  240 (352)
                      +|..||.++..
T Consensus       499 eG~~Aa~~~~~  509 (517)
T PRK15317        499 EGAKAALSAFD  509 (517)
T ss_pred             hHHHHHHHHHH
Confidence            77777776653

>PRK12831 putative oxidoreductase; Provisional

Probab=99.94  E-value=1.1e-25  Score=217.65  Aligned_cols=201  Identities=22%  Similarity=0.310  Sum_probs=152.5

Q ss_pred             EEecCeEEEccCC-CCCCCCCCCCCCCCcEEEecCHHHHHHHHH--------hhcCCCeEEEECCChHHHHHHHHHHhCC
Q 018652           24 LLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIGMEVAAAAVGWK   94 (352)
Q Consensus        24 ~~~yd~lViAtG~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--------~~~~~~~vvVvGgG~~g~e~A~~l~~~g   94 (352)
                      .+.||+||||||+ .|+. ++++|.+.+++++..++.+...+..        ....+++|+|||||++|+++|..|.++|
T Consensus       226 ~~~~d~viiAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~G  304 (464)
T PRK12831        226 EEGFDAVFIGSGAGLPKF-MGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLG  304 (464)
T ss_pred             ccCCCEEEEeCCCCCCCC-CCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcC
Confidence            3679999999998 5764 5678888889887655544322211        1246799999999999999999999999


Q ss_pred             CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC------------------CCC
Q 018652           95 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------------------DGS  156 (352)
Q Consensus        95 ~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~------------------~g~  156 (352)
                      .+||++.+....   .++... ..+ +.+++.||++++++.+.++..++++++..+++.                  +|+
T Consensus       305 a~Vtlv~r~~~~---~m~a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~  379 (464)
T PRK12831        305 AEVHIVYRRSEE---ELPARV-EEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGS  379 (464)
T ss_pred             CEEEEEeecCcc---cCCCCH-HHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCc
Confidence            999999886531   112111 122 335778999999999999976556666555431                  222


Q ss_pred             --EEEcCEEEEccCCCCCchhhhh-cCCccc-CCcEEeCCC-CCCCCCCEEEeccccccCCccCCcccccccHHHHHHHH
Q 018652          157 --TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA  231 (352)
Q Consensus       157 --~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g  231 (352)
                        ++++|.||+++|..|++.++.+ .+++.+ +|.+.||++ ++||.|+|||+|||+..+.          .+..|+.+|
T Consensus       380 ~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~----------~v~~Ai~~G  449 (464)
T PRK12831        380 EFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA----------TVILAMGAG  449 (464)
T ss_pred             eEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch----------HHHHHHHHH
Confidence              6999999999999999888776 677765 578999987 9999999999999986432          456699999


Q ss_pred             HHHHHHHhc
Q 018652          232 QHCIKALLS  240 (352)
Q Consensus       232 ~~aa~~i~~  240 (352)
                      +.||.+|..
T Consensus       450 ~~AA~~I~~  458 (464)
T PRK12831        450 KKAAKAIDE  458 (464)
T ss_pred             HHHHHHHHH
Confidence            999999864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.93  E-value=2e-24  Score=213.41  Aligned_cols=211  Identities=20%  Similarity=0.280  Sum_probs=155.2

Q ss_pred             cCCceEEEECCCc--EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEE
Q 018652            3 YQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVV   77 (352)
Q Consensus         3 ~~~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVv   77 (352)
                      ++++|++++.+++  .|.+.++ .+.||+||||||++|+. |+++|..   ..+++++.....      ....+++++||
T Consensus        78 ~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~~~------~~~~g~~VvVI  149 (555)
T TIGR03143        78 LQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATCDG------EFFTGMDVFVI  149 (555)
T ss_pred             eccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeecCh------hhcCCCEEEEE
Confidence            4678889987663  5666666 58999999999999875 5566632   345655533221      23468999999


Q ss_pred             CCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE---cCC
Q 018652           78 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LED  154 (352)
Q Consensus        78 GgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~  154 (352)
                      |||++|+|+|..|++.|.+|+++++.+.+..   .+..   ..+.++..||++++++.++++..+  +.+..+.   ..+
T Consensus       150 GgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i~~~~~V~~i~~~--~~v~~v~~~~~~~  221 (555)
T TIGR03143       150 GGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEVKFNTELKEATGD--DGLRYAKFVNNVT  221 (555)
T ss_pred             CCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEEEeCCEEEEEEcC--CcEEEEEEEECCC
Confidence            9999999999999999999999999876432   2222   233345569999999999999742  3333332   345


Q ss_pred             CCEE----EcCE----EEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHH
Q 018652          155 GSTI----DADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  225 (352)
Q Consensus       155 g~~i----~~D~----vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~  225 (352)
                      |+..    ++|.    |++++|.+|++.+++. +++.+ +|+|.||++++|+.|+|||+|||+....         ..+.
T Consensus       222 G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~~v~  291 (555)
T TIGR03143       222 GEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---------RQVV  291 (555)
T ss_pred             CCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc---------chhe
Confidence            6532    3676    9999999999998765 46555 5789999999999999999999975321         1345


Q ss_pred             HHHHHHHHHHHHHh
Q 018652          226 HARQSAQHCIKALL  239 (352)
Q Consensus       226 ~A~~~g~~aa~~i~  239 (352)
                      .|..+|+.||.+|.
T Consensus       292 ~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       292 TAVADGAIAATSAE  305 (555)
T ss_pred             eHHhhHHHHHHHHH
Confidence            58889998888874

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1e-24  Score=197.78  Aligned_cols=207  Identities=25%  Similarity=0.343  Sum_probs=162.5

Q ss_pred             CceEEEECCC--cEEEeCCCeEEecCeEEEccCCCCCCCCCCCCC---CCCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            5 DPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         5 ~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      .+|.+++...  +.|.++++. +.+++||||||..++. |.+|+.   .-.+++++..   |   .. +..+++|+||||
T Consensus        81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---c---dg-~~~~k~v~ViGg  151 (305)
T COG0492          81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---C---DG-FFKGKDVVVIGG  151 (305)
T ss_pred             EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---c---Cc-cccCCeEEEEcC
Confidence            5678888764  688888887 9999999999999875 444432   1257887743   2   22 457889999999


Q ss_pred             ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCC---
Q 018652           80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDG---  155 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g---  155 (352)
                      |.+++|-|.+|.+.+.+||+++|++.+.+       .+.+.+.++++ +|++++++.+.++..++   +..+++++.   
T Consensus       152 G~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~---v~~v~l~~~~~~  221 (305)
T COG0492         152 GDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLTNTVVKEILGDD---VEGVVLKNVKGE  221 (305)
T ss_pred             CHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEeCCceeEEecCc---cceEEEEecCCc
Confidence            99999999999999999999999986543       23455556655 89999999999998532   456666653   


Q ss_pred             -CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 018652          156 -STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  234 (352)
Q Consensus       156 -~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~a  234 (352)
                       +.+++|-+++++|..|++++++..+...++|.|.+|+.++||+|+|||||||+....+         ++..|..+|..|
T Consensus       222 ~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~r---------qi~ta~~~G~~A  292 (305)
T COG0492         222 EKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNGR---------QIATAAGDGAIA  292 (305)
T ss_pred             eEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCccc---------EEeehhhhHHHH
Confidence             2689999999999999999999888755578999999999999999999999987653         223366666666


Q ss_pred             HHHHh
Q 018652          235 IKALL  239 (352)
Q Consensus       235 a~~i~  239 (352)
                      |.++.
T Consensus       293 a~~a~  297 (305)
T COG0492         293 ALSAE  297 (305)
T ss_pred             HHHHH
Confidence            66554

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.93  E-value=4.7e-24  Score=199.89  Aligned_cols=197  Identities=27%  Similarity=0.342  Sum_probs=146.3

Q ss_pred             EEecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHHHHHHHh-----------hcCCCeEEEECCChHHHHHHHHHH
Q 018652           24 LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS-----------LEKAKKVVVVGGGYIGMEVAAAAV   91 (352)
Q Consensus        24 ~~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~-----------~~~~~~vvVvGgG~~g~e~A~~l~   91 (352)
                      .+.||+||||||+. |+ .|.+||.+.+++++..  .....+...           ...+++++|||+|++|+|+|..|.
T Consensus       116 ~~~~d~lviAtGs~~~~-~~~ipg~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~  192 (352)
T PRK12770        116 VKKYDAVLIATGTWKSR-KLGIPGEDLPGVYSAL--EYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAV  192 (352)
T ss_pred             HhhCCEEEEEeCCCCCC-cCCCCCccccCceeHH--HHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHH
Confidence            37899999999995 54 5667777677776532  222222110           112689999999999999999999


Q ss_pred             hCCCc-EEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc------------------
Q 018652           92 GWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL------------------  152 (352)
Q Consensus        92 ~~g~~-Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~------------------  152 (352)
                      +.|.+ |+++++.+....    + ......+.|+++||++++++.+++++..  +.+..+++                  
T Consensus       193 ~~g~~~Vtvi~~~~~~~~----~-~~~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~  265 (352)
T PRK12770        193 LLGAEKVYLAYRRTINEA----P-AGKYEIERLIARGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVP  265 (352)
T ss_pred             HcCCCeEEEEeecchhhC----C-CCHHHHHHHHHcCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCcee
Confidence            99987 999987653211    1 1134456689999999999999998743  33333332                  


Q ss_pred             --CCCCEEEcCEEEEccCCCCCchhhhh-cCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHH
Q 018652          153 --EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  228 (352)
Q Consensus       153 --~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~  228 (352)
                        .+++++++|.+|+++|++|++.+..+ +++..+ +|++.||++++|+.|+|||+|||+..+.          .+..|+
T Consensus       266 ~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~----------~~~~A~  335 (352)
T PRK12770        266 IPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPS----------KIGKAI  335 (352)
T ss_pred             cCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcc----------hHHHHH
Confidence              22347999999999999999887766 777665 5789999999999999999999987432          456799


Q ss_pred             HHHHHHHHHHhc
Q 018652          229 QSAQHCIKALLS  240 (352)
Q Consensus       229 ~~g~~aa~~i~~  240 (352)
                      .+|+.+|.+|..
T Consensus       336 ~~g~~aa~~i~~  347 (352)
T PRK12770        336 KSGLRAAQSIHE  347 (352)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999864

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.7e-24  Score=190.49  Aligned_cols=294  Identities=22%  Similarity=0.302  Sum_probs=199.1

Q ss_pred             EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           24 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        24 ~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .++++.+|||||.+|++ |.+||..    .+.-   .++++......+.+.+|||+|++++|+|..|...|.+||+..|+
T Consensus       159 ~~ta~~fvIatG~RPrY-p~IpG~~----Ey~I---TSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS  230 (503)
T KOG4716|consen  159 FLTAENFVIATGLRPRY-PDIPGAK----EYGI---TSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS  230 (503)
T ss_pred             EeecceEEEEecCCCCC-CCCCCce----eeee---cccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence            58999999999999985 6655532    2221   13445555567788999999999999999999999999999886


Q ss_pred             CcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCCCCchh--h
Q 018652          104 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSP--F  176 (352)
Q Consensus       104 ~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~~~~--~  176 (352)
                      - ++ |.|+.++++.+.+.|+++||+|...+.+.+++..+++.. .|..   ..++  +-++|.|+||+|+.+.++-  |
T Consensus       231 I-~L-rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L  307 (503)
T KOG4716|consen  231 I-LL-RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNL  307 (503)
T ss_pred             e-ec-ccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCC
Confidence            3 33 569999999999999999999999888888887666653 2222   2222  4579999999999998763  5


Q ss_pred             hhcCCccc--CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCee
Q 018652          177 ERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYF  252 (352)
Q Consensus       177 ~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~p~~  252 (352)
                      ...|+..+  .|.|++|+.-+|++|+|||+||+....         .|.-+.|++.|+.+|+.|.++...  .|..+|..
T Consensus       308 ~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TT  378 (503)
T KOG4716|consen  308 DNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDYDDVATT  378 (503)
T ss_pred             CccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeeccCCcee
Confidence            67777763  578999999999999999999998753         234456999999999999876543  46666653


Q ss_pred             eeeccCcC--CCCcceeeEEeecCcc----------cEEEEcC-CCCcEEEE---EEECCEEEEEEeecCCHHHhhHHHH
Q 018652          253 YSRVFEYE--GSPRKVWWQFFGDNVG----------ETIEIGN-FDPKIATF---WIDSGKLKGVLVESGSPEEFQLLPT  316 (352)
Q Consensus       253 ~~~~~~~~--g~~~~~~~~~~G~~~~----------~~~~~~~-~~~~~~~~---~~~~~~v~g~~~~~~~~~~~~~~~~  316 (352)
                      ...-++|.  |....-.++-+|..+-          |..+-.. .+.=|.+.   -.++.+|+|.+.+++.+.+...-.+
T Consensus       379 VFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfa  458 (503)
T KOG4716|consen  379 VFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFA  458 (503)
T ss_pred             eecchhccccCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHH
Confidence            33333331  1110000111221110          2221111 11112222   1246899999998889988764433


Q ss_pred             -HHhCCCCCChhh--hcCCCchHH
Q 018652          317 -LARSQPFVDKAK--LQQASSVEE  337 (352)
Q Consensus       317 -~~~~~~~~~~~~--~~~~~~~~e  337 (352)
                       +.+.+.+...-+  +..||+-.|
T Consensus       459 aAlk~glt~~~l~ntigIHPt~aE  482 (503)
T KOG4716|consen  459 AALKCGLTKKDLDNTIGIHPTTAE  482 (503)
T ss_pred             HHHHhcccHHHHhhcccccccchh
Confidence             345565554422  455665544

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.92  E-value=3.3e-24  Score=207.63  Aligned_cols=199  Identities=26%  Similarity=0.341  Sum_probs=145.6

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHH---HhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEE
Q 018652           25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTII  100 (352)
Q Consensus        25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~---~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv  100 (352)
                      +.||+||||||+.....+.++|.+.+++++..++.......   ..+..+++|+|||+|++|+|+|..|.+.|. +|+++
T Consensus       224 ~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv  303 (457)
T PRK11749        224 AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIV  303 (457)
T ss_pred             hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence            78999999999963234456777777776643222221110   112368999999999999999999999997 89999


Q ss_pred             ecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-------------------CCCCEEEc
Q 018652          101 FPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-------------------EDGSTIDA  160 (352)
Q Consensus       101 ~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-------------------~~g~~i~~  160 (352)
                      .+... .++.  .    ....+.+++.||++++++.+.++..+++ .+..|.+                   .+++++++
T Consensus       304 ~~~~~~~~~~--~----~~~~~~~~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~  376 (457)
T PRK11749        304 YRRGREEMPA--S----EEEVEHAKEEGVEFEWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPA  376 (457)
T ss_pred             eecCcccCCC--C----HHHHHHHHHCCCEEEecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEEC
Confidence            98654 2321  1    1234567889999999999999975432 2222332                   12347999


Q ss_pred             CEEEEccCCCCCchhhh-hcCCccc-CCcEEeCC-CCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652          161 DTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  237 (352)
Q Consensus       161 D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~  237 (352)
                      |.||+++|.+|+..++. ..++..+ +|++.||+ +++|+.|+|||+|||+..+.          .+..|+.+|+.+|.+
T Consensus       377 D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~----------~~~~A~~~G~~aA~~  446 (457)
T PRK11749        377 DLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA----------TVVWAVGDGKDAAEA  446 (457)
T ss_pred             CEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCch----------HHHHHHHHHHHHHHH
Confidence            99999999999977764 4566654 57899998 89999999999999995321          556799999999999


Q ss_pred             Hhc
Q 018652          238 LLS  240 (352)
Q Consensus       238 i~~  240 (352)
                      |..
T Consensus       447 I~~  449 (457)
T PRK11749        447 IHE  449 (457)
T ss_pred             HHH
Confidence            864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.92  E-value=3.7e-24  Score=218.67  Aligned_cols=208  Identities=24%  Similarity=0.355  Sum_probs=155.0

Q ss_pred             EEEeCCCeEEecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHHHHHHH--------hhcCCCeEEEECCChHHHHH
Q 018652           16 TLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIGMEV   86 (352)
Q Consensus        16 ~V~~~~g~~~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~--------~~~~~~~vvVvGgG~~g~e~   86 (352)
                      .|++++.....||+||||||+. |+ .+.+||.+.+++++..++.....+..        ....+++|+|||||++|+++
T Consensus       507 ~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~  585 (752)
T PRK12778        507 TITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDS  585 (752)
T ss_pred             cCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHH
Confidence            3444444456799999999994 65 45678888889887655443322211        12357899999999999999


Q ss_pred             HHHHHhCCCc-EEEEecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---------CC
Q 018652           87 AAAAVGWKLD-TTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG  155 (352)
Q Consensus        87 A~~l~~~g~~-Vtvv~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---------~g  155 (352)
                      |..+.++|.+ ||++++++. .++    .... .+ +.+++.||++++++.+.++..++++.+..+++.         +|
T Consensus       586 A~~~~r~Ga~~Vtlv~r~~~~~~~----~~~~-e~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G  659 (752)
T PRK12778        586 ARTAKRLGAERVTIVYRRSEEEMP----ARLE-EV-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASG  659 (752)
T ss_pred             HHHHHHcCCCeEEEeeecCcccCC----CCHH-HH-HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCC
Confidence            9999999987 999998753 222    1111 12 346788999999999999976555666555441         22


Q ss_pred             -----------CEEEcCEEEEccCCCCCchhhhhc-CCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccc
Q 018652          156 -----------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE  222 (352)
Q Consensus       156 -----------~~i~~D~vi~a~G~~p~~~~~~~~-gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~  222 (352)
                                 +++++|.||+++|.+|+..++... +++.+ +|+|.||++++|+.|+|||+|||+..+.          
T Consensus       660 ~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~----------  729 (752)
T PRK12778        660 RRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA----------  729 (752)
T ss_pred             CCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH----------
Confidence                       259999999999999998776553 67665 5789999999999999999999986432          


Q ss_pred             cHHHHHHHHHHHHHHHhc
Q 018652          223 HVDHARQSAQHCIKALLS  240 (352)
Q Consensus       223 ~~~~A~~~g~~aa~~i~~  240 (352)
                      .+..|+.+|+.||.+|..
T Consensus       730 ~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        730 TVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            445699999999999864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.91  E-value=2.4e-22  Score=207.26  Aligned_cols=209  Identities=21%  Similarity=0.290  Sum_probs=152.7

Q ss_pred             cEEEeCCCeEEecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHHHHHHHh----------hcCCCeEEEECCChHH
Q 018652           15 QTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS----------LEKAKKVVVVGGGYIG   83 (352)
Q Consensus        15 ~~V~~~~g~~~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~----------~~~~~~vvVvGgG~~g   83 (352)
                      +.+++++.....||+|+||||+. |+ .+.+||.+.+|+++..++.+.......          ...+++|+|||||++|
T Consensus       381 ~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA  459 (944)
T PRK12779        381 KTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTA  459 (944)
T ss_pred             cEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHH
Confidence            45666666667899999999995 65 456789889999876555443222111          1257899999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC-CcEEEEEc---------
Q 018652           84 MEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKL---------  152 (352)
Q Consensus        84 ~e~A~~l~~~g~~Vtvv~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~-~~~~~v~~---------  152 (352)
                      +++|..+.++|.+|+++.+++. .++     .....+... .+.||+++.+..+++|..+++ +.+..+++         
T Consensus       460 ~D~A~ta~R~Ga~Vtlv~rr~~~~mp-----a~~~e~~~a-~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d  533 (944)
T PRK12779        460 MDAARTAKRLGGNVTIVYRRTKSEMP-----ARVEELHHA-LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPD  533 (944)
T ss_pred             HHHHHHHHHcCCEEEEEEecCccccc-----ccHHHHHHH-HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecccc
Confidence            9999999999999999988753 222     222334343 467999999999999975422 34443322         


Q ss_pred             C--------CC--CEEEcCEEEEccCCCCCchhhh-hcCCccc-CCcEEeCC-CCCCCCCCEEEeccccccCCccCCccc
Q 018652          153 E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTA  219 (352)
Q Consensus       153 ~--------~g--~~i~~D~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~  219 (352)
                      .        +|  .++++|.||+|+|+.|+..+.. ..+++.+ +|.|.||+ .++||.|+|||+|||+..+.       
T Consensus       534 ~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~-------  606 (944)
T PRK12779        534 KSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGS-------  606 (944)
T ss_pred             CcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChH-------
Confidence            1        22  3699999999999999965432 3467655 57899996 68999999999999986432       


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 018652          220 RVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       220 ~~~~~~~A~~~g~~aa~~i~~  240 (352)
                         .+..|+.+|+.||.+|..
T Consensus       607 ---~vv~Ai~eGr~AA~~I~~  624 (944)
T PRK12779        607 ---TAIRAAGDGQAAAKEIVG  624 (944)
T ss_pred             ---HHHHHHHHHHHHHHHHHH
Confidence               445599999999999975

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.90  E-value=9.8e-23  Score=197.84  Aligned_cols=205  Identities=22%  Similarity=0.291  Sum_probs=146.9

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHH--HHHH------hhcCCCeEEEECCChHHHHHHHHHHhCCC-
Q 018652           25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS------SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-   95 (352)
Q Consensus        25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-   95 (352)
                      ..||+||+|||+.+...+.++|.+.+|+++..++....  .+..      ....+++|+|||+|++|+|+|..+.++|. 
T Consensus       227 ~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~  306 (471)
T PRK12810        227 AEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAK  306 (471)
T ss_pred             hhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence            47999999999983334557787788887743222111  1111      12357899999999999999999888886 


Q ss_pred             cEEEEecCCcccccccCH----HH-HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-----CCC---------C
Q 018652           96 DTTIIFPENHLLQRLFTP----SL-AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-----EDG---------S  156 (352)
Q Consensus        96 ~Vtvv~~~~~~~~~~~~~----~~-~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-----~~g---------~  156 (352)
                      +|+++++.+.+.......    .. .....+.+++.||++++++.+++|.. +++++..|++     .+|         +
T Consensus       307 ~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~  385 (471)
T PRK12810        307 SVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEF  385 (471)
T ss_pred             eEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceE
Confidence            788776554332211110    01 11134557788999999999999974 3566655443     222         4


Q ss_pred             EEEcCEEEEccCCCCCc-hhhhhcCCccc-CCcEEeC-CCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          157 TIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       157 ~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd-~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      ++++|.||+++|.+|+. .+++.++++.+ +|.+.+| ++++|+.|+|||+|||+..+.          .+..|+.+|+.
T Consensus       386 ~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~----------~~~~Av~~G~~  455 (471)
T PRK12810        386 VLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----------LVVWAIAEGRQ  455 (471)
T ss_pred             EEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch----------hHHHHHHHHHH
Confidence            79999999999999985 47888888776 5789998 799999999999999997432          45569999999


Q ss_pred             HHHHHhc
Q 018652          234 CIKALLS  240 (352)
Q Consensus       234 aa~~i~~  240 (352)
                      ||.+|..
T Consensus       456 AA~~i~~  462 (471)
T PRK12810        456 AARAIDA  462 (471)
T ss_pred             HHHHHHH
Confidence            9999864

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.90  E-value=1.3e-22  Score=203.60  Aligned_cols=200  Identities=27%  Similarity=0.366  Sum_probs=145.1

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652           25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  103 (352)
Q Consensus        25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~  103 (352)
                      ..||+||||||+.+...+.+||.+.++++...++............+++|+|||+|++|+|+|..+.++|. +|+++.++
T Consensus       277 ~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~  356 (652)
T PRK12814        277 KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRR  356 (652)
T ss_pred             hhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            35999999999986444567787778876432221111111124568999999999999999999999986 59999987


Q ss_pred             Cc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCc-EEEEEcC---------------CCC--EEEcCEEE
Q 018652          104 NH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR-VAAVKLE---------------DGS--TIDADTIV  164 (352)
Q Consensus       104 ~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~-~~~v~~~---------------~g~--~i~~D~vi  164 (352)
                      .+ .++. ..    ..+.+. .+.||++++++.+.++...+++. +..+.+.               +|+  .+++|.||
T Consensus       357 ~~~~mpa-~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI  430 (652)
T PRK12814        357 TREEMPA-NR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVI  430 (652)
T ss_pred             CcccCCC-CH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEE
Confidence            64 3332 22    233343 45799999999999987532221 2222111               222  59999999


Q ss_pred             EccCCCCCchhhhhcCCccc-CCcEEeCC-CCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          165 IGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       165 ~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      +++|..|++.+++..++..+ +|++.||+ .++|+.|+|||+|||+..+.          .+..|+.+|+.||.+|..
T Consensus       431 ~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~----------~v~~Ai~~G~~AA~~I~~  498 (652)
T PRK12814        431 SAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD----------IAINAVEQGKRAAHAIDL  498 (652)
T ss_pred             ECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch----------HHHHHHHHHHHHHHHHHH
Confidence            99999999999888888876 57899997 68999999999999986542          456799999999998853

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.90  E-value=3.5e-22  Score=193.48  Aligned_cols=200  Identities=24%  Similarity=0.303  Sum_probs=148.2

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHH--HHHHHh---------hcCCCeEEEECCChHHHHHHHHHHhC
Q 018652           25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALISS---------LEKAKKVVVVGGGYIGMEVAAAAVGW   93 (352)
Q Consensus        25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~---------~~~~~~vvVvGgG~~g~e~A~~l~~~   93 (352)
                      ..||.||+|||+.+...+.++|.+.+|+++..++...  ..+...         ...+++++|+|+|++|+++|..+.++
T Consensus       225 ~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~  304 (467)
T TIGR01318       225 EDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRL  304 (467)
T ss_pred             hcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHc
Confidence            4799999999998754456788888998865322211  111110         12468999999999999999999999


Q ss_pred             CC-cEEEEecCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---------C--------
Q 018652           94 KL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------D--------  154 (352)
Q Consensus        94 g~-~Vtvv~~~~~~-~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---------~--------  154 (352)
                      |. +||++++++.. ++. ...     ..+.+++.||++++++.+.++..++++++..+++.         +        
T Consensus       305 Ga~~Vtvv~r~~~~~~~~-~~~-----e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~  378 (467)
T TIGR01318       305 GAASVTCAYRRDEANMPG-SRR-----EVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPV  378 (467)
T ss_pred             CCCeEEEEEecCcccCCC-CHH-----HHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceec
Confidence            95 79999987643 331 222     22446788999999999999975545655544431         1        


Q ss_pred             -C--CEEEcCEEEEccCCCCCc-hhhhhcCCccc-CCcEEeC----CCCCCCCCCEEEeccccccCCccCCcccccccHH
Q 018652          155 -G--STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD----GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  225 (352)
Q Consensus       155 -g--~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd----~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~  225 (352)
                       |  +++++|.||+++|++|+. .+++..+++.+ +|++.||    ++++|+.|+|||+|||+..+.          .+.
T Consensus       379 ~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~----------~~~  448 (467)
T TIGR01318       379 AGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD----------LVV  448 (467)
T ss_pred             CCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc----------HHH
Confidence             2  369999999999999984 56777777765 5789999    678999999999999986532          445


Q ss_pred             HHHHHHHHHHHHHhc
Q 018652          226 HARQSAQHCIKALLS  240 (352)
Q Consensus       226 ~A~~~g~~aa~~i~~  240 (352)
                      .|+.+|+.+|.+|..
T Consensus       449 ~Ai~~G~~aA~~i~~  463 (467)
T TIGR01318       449 TAVAEGRQAAQGILD  463 (467)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            699999999999863

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.89  E-value=6.4e-22  Score=202.54  Aligned_cols=199  Identities=24%  Similarity=0.316  Sum_probs=142.0

Q ss_pred             CCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHH---hhcCCCeEEEECCChHHHHHHHHHHhC-CC-
Q 018652           21 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS---SLEKAKKVVVVGGGYIGMEVAAAAVGW-KL-   95 (352)
Q Consensus        21 ~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---~~~~~~~vvVvGgG~~g~e~A~~l~~~-g~-   95 (352)
                      +.+...||+||||||+++...+.++|.. +++.  ...+....+..   ....+++|+|||||++|+++|..+.+. |. 
T Consensus       616 ~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~  692 (1012)
T TIGR03315       616 ELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVE  692 (1012)
T ss_pred             hhhcccccEEEECCCCCCCCCCCcCCCC-ccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCc
Confidence            3345679999999999864444445532 3332  22332333221   234689999999999999999998876 74 


Q ss_pred             cEEEEecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE--------------EcCCCC--EE
Q 018652           96 DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV--------------KLEDGS--TI  158 (352)
Q Consensus        96 ~Vtvv~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v--------------~~~~g~--~i  158 (352)
                      +|+++.++.. .++. ..    ..+.+.+ +.||+++.+..+.++. +  +.+...              ...+|+  ++
T Consensus       693 kVtLVyRr~~~~Mpa-~~----eEl~~al-eeGVe~~~~~~p~~I~-~--g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I  763 (1012)
T TIGR03315       693 KVTVVYRRTKRYMPA-SR----EELEEAL-EDGVDFKELLSPESFE-D--GTLTCEVMKLGEPDASGRRRPVGTGETVDL  763 (1012)
T ss_pred             eEEEEEccCcccccc-CH----HHHHHHH-HcCCEEEeCCceEEEE-C--CeEEEEEEEeecccCCCceeeecCCCeEEE
Confidence            7999998763 3331 22    2344443 5799999988888876 1  221111              112233  68


Q ss_pred             EcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCC-CCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHH
Q 018652          159 DADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK  236 (352)
Q Consensus       159 ~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~  236 (352)
                      ++|.||+|+|.+|++.++++++++.+ +|++.||++ ++|+.|+|||+|||+..+.          .+..|+.+|+.||.
T Consensus       764 ~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~----------tVv~AIaqGr~AA~  833 (1012)
T TIGR03315       764 PADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPA----------TIVEAIADGRKAAN  833 (1012)
T ss_pred             EeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCcc----------HHHHHHHHHHHHHH
Confidence            99999999999999999988888865 578999985 8999999999999986543          45679999999999


Q ss_pred             HHhcC
Q 018652          237 ALLSA  241 (352)
Q Consensus       237 ~i~~~  241 (352)
                      +|++.
T Consensus       834 nIl~~  838 (1012)
T TIGR03315       834 AILSR  838 (1012)
T ss_pred             HHhcc
Confidence            99854

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.89  E-value=1.4e-21  Score=195.52  Aligned_cols=198  Identities=21%  Similarity=0.280  Sum_probs=139.5

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhh-------cCCCeEEEECCChHHHHHHHHHHhCCC--
Q 018652           25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-------EKAKKVVVVGGGYIGMEVAAAAVGWKL--   95 (352)
Q Consensus        25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~-------~~~~~vvVvGgG~~g~e~A~~l~~~g~--   95 (352)
                      ..||+||||||+.+.+.+.++|.+.++++..  .+....+...+       ..+++|+|||||++|+|+|..+.+++.  
T Consensus       367 ~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a--~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~  444 (604)
T PRK13984        367 EKHDAVFLSTGFTLGRSTRIPGTDHPDVIQA--LPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKME  444 (604)
T ss_pred             hcCCEEEEEcCcCCCccCCCCCcCCcCeEeH--HHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccc
Confidence            5799999999997434456778777777653  22233332221       236899999999999999999998753  


Q ss_pred             ----cEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC--------C---------
Q 018652           96 ----DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------D---------  154 (352)
Q Consensus        96 ----~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--------~---------  154 (352)
                          +|+++.... ... .++.... .+.+ +.+.||+++++..+.++.. +++.+..+++.        +         
T Consensus       445 ~g~~~V~v~~~~r-~~~-~~~~~~~-e~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~  519 (604)
T PRK13984        445 YGEVNVKVTSLER-TFE-EMPADME-EIEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDE  519 (604)
T ss_pred             cCceEEEEecccc-Ccc-cCCCCHH-HHHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecC
Confidence                688864321 111 1222222 2333 3467999999998888864 34555544431        1         


Q ss_pred             --CCEEEcCEEEEccCCCCCchhhhh---cCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          155 --GSTIDADTIVIGIGAKPTVSPFER---VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       155 --g~~i~~D~vi~a~G~~p~~~~~~~---~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                        ++++++|.||+++|++|++.++..   .++..++|+|.||++++|++|+|||+|||+..+.           ...|+.
T Consensus       520 g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~-----------~v~Ai~  588 (604)
T PRK13984        520 SDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD-----------IIHGVA  588 (604)
T ss_pred             CceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH-----------HHHHHH
Confidence              236999999999999999887753   2355556889999999999999999999997542           245899


Q ss_pred             HHHHHHHHHhc
Q 018652          230 SAQHCIKALLS  240 (352)
Q Consensus       230 ~g~~aa~~i~~  240 (352)
                      +|+.||.+|..
T Consensus       589 ~G~~AA~~I~~  599 (604)
T PRK13984        589 DGYWAAEGIDM  599 (604)
T ss_pred             HHHHHHHHHHH
Confidence            99999999863

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.89  E-value=3e-21  Score=194.46  Aligned_cols=200  Identities=22%  Similarity=0.298  Sum_probs=147.0

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHH--HHHHHHHh---------hcCCCeEEEECCChHHHHHHHHHHhC
Q 018652           25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALISS---------LEKAKKVVVVGGGYIGMEVAAAAVGW   93 (352)
Q Consensus        25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~~---------~~~~~~vvVvGgG~~g~e~A~~l~~~   93 (352)
                      ..||+|++|||+.....+.+++.+.+|++....+.  ....+...         ...+++|+|||||++|+++|..+.++
T Consensus       411 ~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~  490 (654)
T PRK12769        411 EDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRH  490 (654)
T ss_pred             hcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHc
Confidence            46999999999975434556787788887532111  01111100         12568999999999999999999999


Q ss_pred             CC-cEEEEecCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---------CCC-------
Q 018652           94 KL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---------EDG-------  155 (352)
Q Consensus        94 g~-~Vtvv~~~~~~-~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---------~~g-------  155 (352)
                      |. +|+++.+++.. ++ ..+     ...+.+++.||++++++.++++..++++++..|++         .+|       
T Consensus       491 ga~~Vt~i~~~~~~~~~-~~~-----~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~  564 (654)
T PRK12769        491 GASNVTCAYRRDEANMP-GSK-----KEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPI  564 (654)
T ss_pred             CCCeEEEeEecCCCCCC-CCH-----HHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeC
Confidence            86 69999887543 32 121     22345788999999999999997555566655553         122       


Q ss_pred             --C--EEEcCEEEEccCCCCCc-hhhhhcCCccc-CCcEEeCC----CCCCCCCCEEEeccccccCCccCCcccccccHH
Q 018652          156 --S--TIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  225 (352)
Q Consensus       156 --~--~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~  225 (352)
                        +  ++++|.||+++|+.|+. .+++.++++.+ +|.|.+|+    +++|+.|+|||+||++..+.          .+.
T Consensus       565 ~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~----------~vv  634 (654)
T PRK12769        565 PGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD----------LVV  634 (654)
T ss_pred             CCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc----------HHH
Confidence              2  59999999999999985 56778888876 57799985    48999999999999987543          455


Q ss_pred             HHHHHHHHHHHHHhc
Q 018652          226 HARQSAQHCIKALLS  240 (352)
Q Consensus       226 ~A~~~g~~aa~~i~~  240 (352)
                      .|+.+|+.||++|..
T Consensus       635 ~Ai~~Gr~AA~~I~~  649 (654)
T PRK12769        635 TAMAEGRHAAQGIID  649 (654)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            699999999999864

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.88  E-value=2.2e-21  Score=201.86  Aligned_cols=199  Identities=20%  Similarity=0.307  Sum_probs=146.2

Q ss_pred             EecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHHHHHHH---------hhcCCCeEEEECCChHHHHHHHHHHhCC
Q 018652           25 LKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIGMEVAAAAVGWK   94 (352)
Q Consensus        25 ~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~---------~~~~~~~vvVvGgG~~g~e~A~~l~~~g   94 (352)
                      ..||+||||||+. |+ .+++||.+.+++++..++.....+..         ....+++|+|||||++|+++|..+.++|
T Consensus       516 ~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlG  594 (1006)
T PRK12775        516 KGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLG  594 (1006)
T ss_pred             cCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence            4699999999995 65 45678888889877654443322211         1236799999999999999999999999


Q ss_pred             Cc-EEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-----------------CC-
Q 018652           95 LD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------------DG-  155 (352)
Q Consensus        95 ~~-Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----------------~g-  155 (352)
                      .+ |+++.+....-   ++.. ... .+.+++.||++++++.+.++..++++++..+++.                 +| 
T Consensus       595 a~~Vtiv~rr~~~e---m~a~-~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~  669 (1006)
T PRK12775        595 APTVRCVYRRSEAE---APAR-IEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGE  669 (1006)
T ss_pred             CCEEEEEeecCccc---CCCC-HHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCc
Confidence            75 78887654221   1111 111 2346788999999999999976556766555431                 12 


Q ss_pred             -CEEEcCEEEEccCCCCCchhhhh-cCCccc-CCcEEeCC-----CCCCCCCCEEEeccccccCCccCCcccccccHHHH
Q 018652          156 -STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  227 (352)
Q Consensus       156 -~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~-----~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A  227 (352)
                       .++++|.||+++|..|++.++.. .++..+ +|.|.+|+     .++||.|+|||+|||+..+.          .+..|
T Consensus       670 ~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~----------~vv~A  739 (1006)
T PRK12775        670 FKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA----------TVILA  739 (1006)
T ss_pred             eEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc----------HHHHH
Confidence             25999999999999999876654 366654 57799986     78999999999999986432          44568


Q ss_pred             HHHHHHHHHHHh
Q 018652          228 RQSAQHCIKALL  239 (352)
Q Consensus       228 ~~~g~~aa~~i~  239 (352)
                      +.+|+.||.+|.
T Consensus       740 i~~Gr~AA~~I~  751 (1006)
T PRK12775        740 MGAGRRAARSIA  751 (1006)
T ss_pred             HHHHHHHHHHHH
Confidence            899999998875

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.88  E-value=3e-21  Score=187.66  Aligned_cols=205  Identities=21%  Similarity=0.314  Sum_probs=143.3

Q ss_pred             EecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHH-HHHHH---------HhhcCCCeEEEECCChHHHHHHHHHHhC
Q 018652           25 LKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVAD-ADALI---------SSLEKAKKVVVVGGGYIGMEVAAAAVGW   93 (352)
Q Consensus        25 ~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~-~~~~~---------~~~~~~~~vvVvGgG~~g~e~A~~l~~~   93 (352)
                      ..||+|++|||+. |+ .++++|.+.+|+++...+.. .....         .....+++|+|||+|++|+++|..+.++
T Consensus       227 ~~~d~VilAtGa~~~~-~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~  305 (485)
T TIGR01317       227 EQFDAVVLAGGATKPR-DLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRH  305 (485)
T ss_pred             hhCCEEEEccCCCCCC-cCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHc
Confidence            5799999999998 55 45678888889987533221 11110         1113679999999999999998888777


Q ss_pred             C-CcEEEEecCCcccccccC----H------HHHHHHHHHHHhCCcEE-EcCCeEEEEEecCCCcEEEEEc--------C
Q 018652           94 K-LDTTIIFPENHLLQRLFT----P------SLAQRYEQLYQQNGVKF-VKGASIKNLEAGSDGRVAAVKL--------E  153 (352)
Q Consensus        94 g-~~Vtvv~~~~~~~~~~~~----~------~~~~~l~~~l~~~gV~~-~~~~~v~~i~~~~~~~~~~v~~--------~  153 (352)
                      | .+|+++++.+.++.....    +      +.....++..+..|+.+ ++++.+.+|..++++.+..+++        +
T Consensus       306 ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~  385 (485)
T TIGR01317       306 GAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQ  385 (485)
T ss_pred             CCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCC
Confidence            6 579999887655432110    1      12223344444457654 4577788886543455555542        1


Q ss_pred             CC-----------CEEEcCEEEEccCCC-CCchhhhhcCCccc-CCcEEe-CCCCCCCCCCEEEeccccccCCccCCccc
Q 018652          154 DG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAFPLKMYDRTA  219 (352)
Q Consensus       154 ~g-----------~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~v-d~~~~t~~~~Iya~GD~a~~~~~~~~~~~  219 (352)
                      +|           +++++|.||+++|.. |++.+++.++++.+ +|.+.+ |++++|+.|+|||+|||+..+.       
T Consensus       386 ~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~-------  458 (485)
T TIGR01317       386 DGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQS-------  458 (485)
T ss_pred             CCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcH-------
Confidence            33           269999999999996 88888888888855 577754 5789999999999999986432       


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 018652          220 RVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       220 ~~~~~~~A~~~g~~aa~~i~~  240 (352)
                         ....|+.+|+.||.+|..
T Consensus       459 ---~~~~Av~~G~~AA~~i~~  476 (485)
T TIGR01317       459 ---LIVWAINEGRKAAAAVDR  476 (485)
T ss_pred             ---HHHHHHHHHHHHHHHHHH
Confidence               345589999999998853

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.86  E-value=2.2e-20  Score=187.40  Aligned_cols=200  Identities=21%  Similarity=0.302  Sum_probs=145.1

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHH--HHHHH---------hhcCCCeEEEECCChHHHHHHHHHHhC
Q 018652           25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGYIGMEVAAAAVGW   93 (352)
Q Consensus        25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~---------~~~~~~~vvVvGgG~~g~e~A~~l~~~   93 (352)
                      ..||+|++|||+.+...+.+++.+.+|+++...+...  ..+..         ....+++++|+|+|.+++++|..+.++
T Consensus       394 ~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~  473 (639)
T PRK12809        394 SEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRL  473 (639)
T ss_pred             hcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHc
Confidence            5799999999998654456778778887763211110  11110         012578999999999999999999898


Q ss_pred             CC-cEEEEecCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---C------CC-------
Q 018652           94 KL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---E------DG-------  155 (352)
Q Consensus        94 g~-~Vtvv~~~~~~-~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~------~g-------  155 (352)
                      |. +||++.++++. ++. ...    .+. .+++.||++++++.+++|..++++++..+++   .      +|       
T Consensus       474 Ga~~Vt~v~rr~~~~~~~-~~~----e~~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~  547 (639)
T PRK12809        474 NAASVTCAYRRDEVSMPG-SRK----EVV-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPV  547 (639)
T ss_pred             CCCeEEEeeecCcccCCC-CHH----HHH-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceec
Confidence            85 79999987544 331 222    222 3567899999999999997555566654432   1      12       


Q ss_pred             ----CEEEcCEEEEccCCCCCc-hhhhhcCCccc-CCcEEeCC----CCCCCCCCEEEeccccccCCccCCcccccccHH
Q 018652          156 ----STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  225 (352)
Q Consensus       156 ----~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~  225 (352)
                          .++++|.||+++|+.|+. .++++++++.+ +|.|.+|+    +++|+.|+|||+|||+..+.          .+.
T Consensus       548 ~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~----------~vv  617 (639)
T PRK12809        548 AGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD----------LVV  617 (639)
T ss_pred             CCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch----------HHH
Confidence                268999999999999974 56777788765 57788885    48999999999999986542          455


Q ss_pred             HHHHHHHHHHHHHhc
Q 018652          226 HARQSAQHCIKALLS  240 (352)
Q Consensus       226 ~A~~~g~~aa~~i~~  240 (352)
                      .|+.+|+.||++|..
T Consensus       618 ~Ai~~Gr~AA~~i~~  632 (639)
T PRK12809        618 TAMAAGRQAARDMLT  632 (639)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            699999999999874

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.85  E-value=1.1e-19  Score=189.92  Aligned_cols=188  Identities=16%  Similarity=0.184  Sum_probs=140.8

Q ss_pred             EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEec
Q 018652           24 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFP  102 (352)
Q Consensus        24 ~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~  102 (352)
                      .+.||+||||||+.++. ++++|.+.+++++.........- .....+++++|+|+|++|+|+|..|++.|. .|+++++
T Consensus       272 ~i~a~~VILATGa~~r~-~pipG~~~pgV~~~~~~~~~l~~-~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~  349 (985)
T TIGR01372       272 RIRAKRVVLATGAHERP-LVFANNDRPGVMLAGAARTYLNR-YGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDA  349 (985)
T ss_pred             EEEcCEEEEcCCCCCcC-CCCCCCCCCCcEEchHHHHHHHh-hCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcc
Confidence            58999999999999864 55788889999886544332111 112368999999999999999999999995 4788876


Q ss_pred             CCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC----CCCEEEcCEEEEccCCCCCchhhhh
Q 018652          103 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFER  178 (352)
Q Consensus       103 ~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~----~g~~i~~D~vi~a~G~~p~~~~~~~  178 (352)
                      .+.+         ...+.+.+++.||++++++.+.++..  ++.+..|++.    ++++++||.|+++.|.+||++++..
T Consensus       350 ~~~~---------~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~  418 (985)
T TIGR01372       350 RADV---------SPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQ  418 (985)
T ss_pred             Ccch---------hHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHh
Confidence            6433         22456778999999999999999974  3344445543    4568999999999999999999888


Q ss_pred             cCCccc--C--CcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          179 VGLNSS--V--GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       179 ~gl~~~--~--g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      ++....  .  +...    -.|+.|+||++|||+...           ....|..+|+.||..++
T Consensus       419 lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~~g~~-----------~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       419 RGGKLAWDAAIAAFL----PGDAVQGCILAGAANGLF-----------GLAAALADGAAAGAAAA  468 (985)
T ss_pred             cCCCeeeccccCcee----cCCCCCCeEEeeccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence            775432  1  1111    137799999999998653           34558888888888775

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.5e-20  Score=164.04  Aligned_cols=185  Identities=25%  Similarity=0.367  Sum_probs=147.3

Q ss_pred             CcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHH
Q 018652           14 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA   90 (352)
Q Consensus        14 ~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l   90 (352)
                      ..+|++++|..+..+.+|||||++.+. ..+||++   -+|+-|+.      .+..-+.++|+|+|||||++|+|.|..|
T Consensus       301 l~ev~l~nGavLkaktvIlstGArWRn-~nvPGE~e~rnKGVayCP------HCDGPLF~gK~VAVIGGGNSGvEAAIDL  373 (520)
T COG3634         301 LIEVELANGAVLKARTVILATGARWRN-MNVPGEDEYRNKGVAYCP------HCDGPLFKGKRVAVIGGGNSGVEAAIDL  373 (520)
T ss_pred             cEEEEecCCceeccceEEEecCcchhc-CCCCchHHHhhCCeeeCC------CCCCcccCCceEEEECCCcchHHHHHhH
Confidence            358999999999999999999999875 4467753   46777754      3444577899999999999999999999


Q ss_pred             HhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCC---CC--EEEcCEEE
Q 018652           91 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIV  164 (352)
Q Consensus        91 ~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g~--~i~~D~vi  164 (352)
                      +..-..||+++-.+.+..       .+.+++.+++ .++++++|...++|..+ ..++..+...+   |+  .++-+-|+
T Consensus       374 AGiv~hVtllEF~~eLkA-------D~VLq~kl~sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~LeGvF  445 (520)
T COG3634         374 AGIVEHVTLLEFAPELKA-------DAVLQDKLRSLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELEGVF  445 (520)
T ss_pred             Hhhhheeeeeecchhhhh-------HHHHHHHHhcCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEeeeeE
Confidence            998889999976654432       2345555555 47999999999999843 34555555533   33  57888999


Q ss_pred             EccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCcc
Q 018652          165 IGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM  214 (352)
Q Consensus       165 ~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~  214 (352)
                      +-+|..||++||+.. ++.+ +|-|.||.+..||+|+|||+|||+..++.+
T Consensus       446 VqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQ  495 (520)
T COG3634         446 VQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQ  495 (520)
T ss_pred             EEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccce
Confidence            999999999999987 5544 678999999999999999999999887653

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.82  E-value=5.4e-19  Score=170.03  Aligned_cols=206  Identities=19%  Similarity=0.268  Sum_probs=136.9

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHH-------HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC----
Q 018652           25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----   93 (352)
Q Consensus        25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~-------~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~----   93 (352)
                      ..||+||||||+.+...+.+||.+.+|++...++..       +..+...+..+++++|||+|++|+++|..|.+.    
T Consensus       113 ~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l  192 (491)
T PLN02852        113 DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDEL  192 (491)
T ss_pred             hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCcccc
Confidence            479999999999864456678988999987654421       111111234689999999999999999998875    


Q ss_pred             ----------------CC-cEEEEecCCcccccccCHHH-------------------------------------HHHH
Q 018652           94 ----------------KL-DTTIIFPENHLLQRLFTPSL-------------------------------------AQRY  119 (352)
Q Consensus        94 ----------------g~-~Vtvv~~~~~~~~~~~~~~~-------------------------------------~~~l  119 (352)
                                      +. +|+++.|+...-..+..+++                                     .+.+
T Consensus       193 ~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l  272 (491)
T PLN02852        193 ASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELL  272 (491)
T ss_pred             ccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHH
Confidence                            54 59999887532111111111                                     1112


Q ss_pred             HHHHHh---------CCcEEEcCCeEEEEEec--CCCcEEEEEcC-----------------CCC--EEEcCEEEEccCC
Q 018652          120 EQLYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE-----------------DGS--TIDADTIVIGIGA  169 (352)
Q Consensus       120 ~~~l~~---------~gV~~~~~~~v~~i~~~--~~~~~~~v~~~-----------------~g~--~i~~D~vi~a~G~  169 (352)
                      .+...+         ++|.|++....++|..+  +++++..+++.                 +|+  .++||.||.++|+
T Consensus       273 ~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~  352 (491)
T PLN02852        273 SKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGY  352 (491)
T ss_pred             HHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecC
Confidence            222122         57999999999999742  22566665542                 232  5899999999999


Q ss_pred             C--CCchh-h-hhcCCcc-cCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          170 K--PTVSP-F-ERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       170 ~--p~~~~-~-~~~gl~~-~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      +  |...+ + ...++.. ++|.|.+|+.++|+.|+|||+|||...+...         +..++..|+.++.+|+
T Consensus       353 ~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gv---------I~t~~~dA~~ta~~i~  418 (491)
T PLN02852        353 KSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGI---------IGTNLTCAEETVASIA  418 (491)
T ss_pred             CCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCCe---------eeecHhhHHHHHHHHH
Confidence            8  55443 2 2234443 3688999988899999999999999865432         2235566666666665

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.82  E-value=6.6e-19  Score=174.80  Aligned_cols=198  Identities=26%  Similarity=0.334  Sum_probs=139.4

Q ss_pred             ecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCC
Q 018652           26 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPEN  104 (352)
Q Consensus        26 ~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~  104 (352)
                      .||++++|||+.+.....+++....++...-.+............+++++|+|+|..+++.+..+.+++ .+|+++.+.+
T Consensus       222 ~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~  301 (564)
T PRK12771        222 EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT  301 (564)
T ss_pred             hCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            589999999997543344566556665543221111110111235789999999999999999999988 6799988765


Q ss_pred             cc-cccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcE----EEEEc----CC-------C--CEEEcCEEEEc
Q 018652          105 HL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV----AAVKL----ED-------G--STIDADTIVIG  166 (352)
Q Consensus       105 ~~-~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~----~~v~~----~~-------g--~~i~~D~vi~a  166 (352)
                      .. ++. .    ...+.+ ..+.||+++++..+.++...+++..    ..+..    .+       |  .++++|.||++
T Consensus       302 ~~~~~~-~----~~~~~~-a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A  375 (564)
T PRK12771        302 REDMPA-H----DEEIEE-ALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLA  375 (564)
T ss_pred             cccCCC-C----HHHHHH-HHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEEC
Confidence            32 221 1    122333 4568999999999999975444432    12221    12       2  37999999999


Q ss_pred             cCCCCCchhhhh-cCCcccCCcEEeCC-CCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          167 IGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       167 ~G~~p~~~~~~~-~gl~~~~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      +|..|++.++++ .++..++|++.+|+ .++|+.|+|||+|||+..+.          .+..|+.+|+.+|.+|.
T Consensus       376 ~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~----------~v~~Av~~G~~aA~~i~  440 (564)
T PRK12771        376 IGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR----------TVTTAIGHGKKAARNID  440 (564)
T ss_pred             cCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCch----------HHHHHHHHHHHHHHHHH
Confidence            999999888875 56764578899998 78899999999999986432          55669999999998884

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=3.4e-19  Score=148.81  Aligned_cols=195  Identities=20%  Similarity=0.307  Sum_probs=141.6

Q ss_pred             CCceEEEECCCc--EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHh--hcCCCeEEEECC
Q 018652            4 QDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS--LEKAKKVVVVGG   79 (352)
Q Consensus         4 ~~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--~~~~~~vvVvGg   79 (352)
                      ..+|.++|...+  .+.++. +.+.+|.+|+|||+..+++. .||. -++.++-+.+..|.-+...  +..+|..+||||
T Consensus        89 tEtVskv~~sskpF~l~td~-~~v~~~avI~atGAsAkRl~-~pg~-ge~~fWqrGiSaCAVCDGaapifrnk~laVIGG  165 (322)
T KOG0404|consen   89 TETVSKVDLSSKPFKLWTDA-RPVTADAVILATGASAKRLH-LPGE-GEGEFWQRGISACAVCDGAAPIFRNKPLAVIGG  165 (322)
T ss_pred             eeehhhccccCCCeEEEecC-CceeeeeEEEecccceeeee-cCCC-CcchHHhcccchhhcccCcchhhcCCeeEEEcC
Confidence            345677776554  566644 46899999999999987643 3443 1222444455555444433  357899999999


Q ss_pred             ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH-HHHHhCCcEEEcCCeEEEEEecCCCc-----EEEEEcC
Q 018652           80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGR-----VAAVKLE  153 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~-~~l~~~gV~~~~~~~v~~i~~~~~~~-----~~~v~~~  153 (352)
                      |.++||-|.+|.+.+.+|++++|++++..       +..++ +..+.-+|+++.|+.+.+...+ ...     +..+.+.
T Consensus       166 GDsA~EEA~fLtkyaskVyii~Rrd~fRA-------s~~Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tg  237 (322)
T KOG0404|consen  166 GDSAMEEALFLTKYASKVYIIHRRDHFRA-------SKIMQQRAEKNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTG  237 (322)
T ss_pred             cHHHHHHHHHHHhhccEEEEEEEhhhhhH-------HHHHHHHHhcCCCeEEEechhhhhhccC-cccccceEEEecccC
Confidence            99999999999999999999999986643       23333 4455568999999988776533 222     2233333


Q ss_pred             CCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCC-CCCCCCCCEEEecccccc
Q 018652          154 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAF  210 (352)
Q Consensus       154 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~  210 (352)
                      +-+.++.+-++.++|..|++.+++. .++.| +|.|++-+ .-.||+|++||+||+...
T Consensus       238 e~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~  295 (322)
T KOG0404|consen  238 EETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK  295 (322)
T ss_pred             cccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchH
Confidence            3457999999999999999999987 56655 67788764 677899999999999865

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.75  E-value=1.1e-17  Score=143.05  Aligned_cols=198  Identities=27%  Similarity=0.348  Sum_probs=144.7

Q ss_pred             eEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHH
Q 018652            7 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEV   86 (352)
Q Consensus         7 V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~   86 (352)
                      |..+|..++.+.+.+|.++.|++|++|||++|...-  .+ --+-+..+|+.+..+.++..+.+.|.|.|+|.|-+++|+
T Consensus        73 v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El  149 (334)
T KOG2755|consen   73 VVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMEL  149 (334)
T ss_pred             hhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHH
Confidence            778899999999999999999999999999986432  22 235677788888888888889999999999999999999


Q ss_pred             HHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCC------------cEEEcCCe-------------------
Q 018652           87 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG------------VKFVKGAS-------------------  135 (352)
Q Consensus        87 A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~g------------V~~~~~~~-------------------  135 (352)
                      +..+..  .+|++....+.+...+++|.+.+.+...++..+            ++...++.                   
T Consensus       150 ~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~  227 (334)
T KOG2755|consen  150 TYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQ  227 (334)
T ss_pred             HHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccc
Confidence            999864  679998888888888888888877776651111            11111110                   


Q ss_pred             ----------------EEEEE-ecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCchhhhhcCCcc-cCCcEEeCCCCC
Q 018652          136 ----------------IKNLE-AGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFR  195 (352)
Q Consensus       136 ----------------v~~i~-~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~-~~g~i~vd~~~~  195 (352)
                                      +..+. +.+...+.......|  .++.||.+++++|..||.+++-...+.. ++|++.||+.|+
T Consensus       228 g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~  307 (334)
T KOG2755|consen  228 GISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAME  307 (334)
T ss_pred             cchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhcc
Confidence                            00000 000000111111111  3688999999999999998765444443 468999999999


Q ss_pred             CCCCCEEEeccccc
Q 018652          196 TRMPGIFAIGDVAA  209 (352)
Q Consensus       196 t~~~~Iya~GD~a~  209 (352)
                      |+.|++||+||++.
T Consensus       308 tslpdvFa~gDvct  321 (334)
T KOG2755|consen  308 TSLPDVFAAGDVCT  321 (334)
T ss_pred             ccccceeeecceec
Confidence            99999999999987

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.69  E-value=8.4e-16  Score=148.20  Aligned_cols=211  Identities=17%  Similarity=0.168  Sum_probs=135.8

Q ss_pred             CccCCceEEEECCCc--EEEeCCC--e--EEecCeEEEccC--CCCCCCCCCCCC-CCCcE-EEecCHHHHHHHHHhhcC
Q 018652            1 MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYGSLIVATG--CTASRFPEKIGG-YLPGV-HYIRDVADADALISSLEK   70 (352)
Q Consensus         1 ~~~~~~V~~id~~~~--~V~~~~g--~--~~~yd~lViAtG--~~~~~~~~~~g~-~~~~v-~~~~~~~~~~~~~~~~~~   70 (352)
                      ++++++|++|++.+.  .|++.++  .  +..||+||+|||  +.|+ .|.++|. ..+|. .+..++.+..     ...
T Consensus       130 I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~~-----~~~  203 (461)
T PLN02172        130 VRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVPD-----PFK  203 (461)
T ss_pred             EEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCc-CCCCCCcccCCceEEEecccCCcc-----ccC
Confidence            357899999998654  5665432  2  467999999999  5665 4666664 23442 1111111111     237


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  150 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v  150 (352)
                      +|+|+|||+|.+|+++|..|++.+.+|+++.++..+..          . ..+.....++..+..|..+..  ++   .|
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~----------~-~~~~~~~~~v~~~~~I~~~~~--~g---~V  267 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT----------Y-EKLPVPQNNLWMHSEIDTAHE--DG---SI  267 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc----------c-ccCcCCCCceEECCcccceec--CC---eE
Confidence            89999999999999999999999999999998753211          0 011112234455666666642  22   47


Q ss_pred             EcCCCCEEEcCEEEEccCCCCCchhhhhcC-CcccCCcEE-eCCC-CCCC-CCCEEEeccccccCCccCCcccccccHHH
Q 018652          151 KLEDGSTIDADTIVIGIGAKPTVSPFERVG-LNSSVGGIQ-VDGQ-FRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDH  226 (352)
Q Consensus       151 ~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g-l~~~~g~i~-vd~~-~~t~-~~~Iya~GD~a~~~~~~~~~~~~~~~~~~  226 (352)
                      .+.||+.+++|.||+|||++|+.+++...+ +..+++.+. .-++ +-.. .|+++.+|=.....           .+..
T Consensus       268 ~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~-----------~f~~  336 (461)
T PLN02172        268 VFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGI-----------QFVM  336 (461)
T ss_pred             EECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEecccccc-----------Cchh
Confidence            899999999999999999999999987532 222222211 1111 1122 48999999542211           3344


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 018652          227 ARQSAQHCIKALLSAQTH  244 (352)
Q Consensus       227 A~~~g~~aa~~i~~~~~~  244 (352)
                      ...||+.+|+.+.|....
T Consensus       337 ~E~Qa~~~a~v~sG~~~L  354 (461)
T PLN02172        337 FEIQSKWVAAVLSGRVTL  354 (461)
T ss_pred             HHHHHHHHHHHHcCCCCC
Confidence            778999999988765443

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.65  E-value=2e-15  Score=132.74  Aligned_cols=225  Identities=18%  Similarity=0.266  Sum_probs=154.7

Q ss_pred             cCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCC----CCCCcEEEecCHHHHHHHHHhh---cCCCeEE
Q 018652            3 YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALISSL---EKAKKVV   75 (352)
Q Consensus         3 ~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g----~~~~~v~~~~~~~~~~~~~~~~---~~~~~vv   75 (352)
                      ++.+|++++|++++|.+.+|++|+||+||||+|..-+ ...++|    .+.|++.+..+....+...+.+   +.+.-+.
T Consensus       110 i~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIf  188 (446)
T KOG3851|consen  110 IKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIF  188 (446)
T ss_pred             HHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEE
Confidence            4578999999999999999999999999999999854 455555    3467887777766665554443   3333322


Q ss_pred             --------EECCChHHHHHHH-HHHhCCC--cEEEEecCCcccccccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecC
Q 018652           76 --------VVGGGYIGMEVAA-AAVGWKL--DTTIIFPENHLLQRLFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  143 (352)
Q Consensus        76 --------VvGgG~~g~e~A~-~l~~~g~--~Vtvv~~~~~~~~~~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~  143 (352)
                              .-|+-.-.|-++. +++++|.  ++.++.--.  ++..|+ +..++.+++..++++|++.....+.++..++
T Consensus       189 TfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~  266 (446)
T KOG3851|consen  189 TFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTND  266 (446)
T ss_pred             ecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecC--ccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccc
Confidence                    2344444555544 4666664  345543321  223343 4678889999999999999998899987543


Q ss_pred             CCcEEEEEcCCC--CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCC-CCCC-CCCCEEEeccccccCCccCCccc
Q 018652          144 DGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAIGDVAAFPLKMYDRTA  219 (352)
Q Consensus       144 ~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-~~~t-~~~~Iya~GD~a~~~~~~~~~~~  219 (352)
                      ...+....-+-|  ++++++++-+....++. +.+..+.+.+..|++.||. .+|. ..||||++|||...|..+     
T Consensus       267 ~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsK-----  340 (446)
T KOG3851|consen  267 RKAVFENLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSK-----  340 (446)
T ss_pred             hhhHHHhcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceeeccccCCCchh-----
Confidence            222211111224  37899999999998886 6777888877789999996 7775 899999999999988753     


Q ss_pred             ccccHHHHHHHHHHHHHHHh
Q 018652          220 RVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       220 ~~~~~~~A~~~g~~aa~~i~  239 (352)
                         .......|...+-+|+.
T Consensus       341 ---TaAAvaaq~~vv~~nl~  357 (446)
T KOG3851|consen  341 ---TAAAVAAQSPVVDKNLT  357 (446)
T ss_pred             ---hHHHHHhcCchhhhhHH
Confidence               22223345555566664

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.58  E-value=9e-15  Score=125.96  Aligned_cols=139  Identities=26%  Similarity=0.418  Sum_probs=99.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--cccCH-----------HHH--H--HHHHHHHhCCcEEEcCCe
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--RLFTP-----------SLA--Q--RYEQLYQQNGVKFVKGAS  135 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--~~~~~-----------~~~--~--~l~~~l~~~gV~~~~~~~  135 (352)
                      +|+|||||+.|+.+|..|++.+.+++++++.+....  ..+..           ...  .  .+.+.+...+++++.+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            589999999999999999999999999977653110  00000           001  1  333445778999999999


Q ss_pred             EEEEEecCCC------cEEEEEcCCCCEEEcCEEEEccCCCCCchh----------------------------------
Q 018652          136 IKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSP----------------------------------  175 (352)
Q Consensus       136 v~~i~~~~~~------~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~----------------------------------  175 (352)
                      +.+++.....      .+......++.++++|.+|+|+|..|+...                                  
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~  160 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGT  160 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEEST
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccc
Confidence            9999864331      112234556678999999999998855221                                  


Q ss_pred             --h-hhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccC
Q 018652          176 --F-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP  211 (352)
Q Consensus       176 --~-~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~  211 (352)
                        + +..+++.+ +|++.||+++||+.|+|||+|||+..+
T Consensus       161 ~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  161 EFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             TTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             cccccccccccccccccccccccccccccccccccccccC
Confidence              0 33455654 688999999999999999999999864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.57  E-value=3.4e-14  Score=103.67  Aligned_cols=80  Identities=39%  Similarity=0.653  Sum_probs=74.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  152 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~  152 (352)
                      +++|||||++|+|+|..|++.|.+||++++++.++ +.++++....+.+.+++.||++++++.++++++++++ +. |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence            68999999999999999999999999999999999 4699999999999999999999999999999987666 65 888


Q ss_pred             CCC
Q 018652          153 EDG  155 (352)
Q Consensus       153 ~~g  155 (352)
                      +||
T Consensus        78 ~~g   80 (80)
T PF00070_consen   78 EDG   80 (80)
T ss_dssp             ETS
T ss_pred             ecC
Confidence            876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.51  E-value=2.9e-13  Score=132.46  Aligned_cols=220  Identities=22%  Similarity=0.284  Sum_probs=114.0

Q ss_pred             CccCCceEEEECCC-------cEEEeCC-Ce--EEecCeEEEccCCCCC-CCCC--CCCC-CCCc-EEEecCHHHHHHHH
Q 018652            1 MIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTAS-RFPE--KIGG-YLPG-VHYIRDVADADALI   65 (352)
Q Consensus         1 ~~~~~~V~~id~~~-------~~V~~~~-g~--~~~yd~lViAtG~~~~-~~~~--~~g~-~~~~-v~~~~~~~~~~~~~   65 (352)
                      +.++++|++|++..       ..|++++ |+  +-.||+||+|||.... ..|.  +||. ..+| +.+.+++.+.    
T Consensus       103 I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~----  178 (531)
T PF00743_consen  103 IRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDP----  178 (531)
T ss_dssp             EETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TG----
T ss_pred             EEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcCh----
Confidence            46899999997532       4676654 43  3579999999997521 1232  3342 1233 2232222221    


Q ss_pred             HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc-cccccc----------------------CHHHHHHHH-H
Q 018652           66 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLF----------------------TPSLAQRYE-Q  121 (352)
Q Consensus        66 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~-~~~~~~----------------------~~~~~~~l~-~  121 (352)
                       ...++|+|+|||+|.+|+++|..|++...+|++..|+.. ++++..                      +..+.+.+. +
T Consensus       179 -~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~  257 (531)
T PF00743_consen  179 -EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEK  257 (531)
T ss_dssp             -GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------------------------------------------
T ss_pred             -hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccccccccccccccccccc
Confidence             234799999999999999999999999999998887732 222211                      111111111 0


Q ss_pred             --------------------------------HHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEE-EcCEEEEccC
Q 018652          122 --------------------------------LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIG  168 (352)
Q Consensus       122 --------------------------------~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i-~~D~vi~a~G  168 (352)
                                                      .+....|++.  ..|.+++.      ..|.++||+.+ ++|.||+|||
T Consensus       258 ~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~------~~v~F~DGs~~e~vD~II~~TG  329 (531)
T PF00743_consen  258 KLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTE------NSVIFEDGSTEEDVDVIIFCTG  329 (531)
T ss_dssp             -----------------------------------------E--E-EEEE-S------SEEEETTSEEEEE-SEEEE---
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc--cccccccc------cccccccccccccccccccccc
Confidence                                            0111112222  11334432      15778999875 6999999999


Q ss_pred             CCCCchhhhhcCCcccCCcEEeCCCCC---CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 018652          169 AKPTVSPFERVGLNSSVGGIQVDGQFR---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  243 (352)
Q Consensus       169 ~~p~~~~~~~~gl~~~~g~i~vd~~~~---t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  243 (352)
                      ++...+++.+.-+...++.+..-.++-   -..|++..+|=+... ..         .+..+..||+.+|+.+.|...
T Consensus       330 Y~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-g~---------~fp~~ElQArw~a~v~sG~~~  397 (531)
T PF00743_consen  330 YKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-GS---------IFPIFELQARWAARVFSGRVK  397 (531)
T ss_dssp             EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-S----------HHHHHHHHHHHHHHHHTTSS-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-cc---------ccccccccccccccccccccc
Confidence            999988887765544333332223221   245889999865321 11         344578899999998876443

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.47  E-value=3.1e-13  Score=129.07  Aligned_cols=204  Identities=27%  Similarity=0.313  Sum_probs=138.7

Q ss_pred             ecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhh---------cCCCeEEEECCChHHHHHHHHHHhCCC-
Q 018652           26 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGYIGMEVAAAAVGWKL-   95 (352)
Q Consensus        26 ~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~---------~~~~~vvVvGgG~~g~e~A~~l~~~g~-   95 (352)
                      .||++++|||+.-.+...++|.+.++++..-++..........         ..+++++|||+|.++++++....++|. 
T Consensus       208 e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~  287 (457)
T COG0493         208 EYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAK  287 (457)
T ss_pred             hhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCe
Confidence            6799999999864444567787788876543322221111111         133899999999999999999999997 


Q ss_pred             cEEEEecCCcccccc-cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-------------------CC
Q 018652           96 DTTIIFPENHLLQRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------------------DG  155 (352)
Q Consensus        96 ~Vtvv~~~~~~~~~~-~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-------------------~g  155 (352)
                      +|+.+.+...-.... .+..-.....+...++|+...+.....++..+++|++..+.+.                   .|
T Consensus       288 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~g  367 (457)
T COG0493         288 SVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIG  367 (457)
T ss_pred             EEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccC
Confidence            677775322110100 1112233455666788899999888889887777877655331                   12


Q ss_pred             C--EEEcCEEEEccCCCCCchhh--hhcCCccc-CCcEEeCCCC-CCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          156 S--TIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       156 ~--~i~~D~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~-~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                      +  .+++|.|+.++|+.++....  ...++..+ .|.+.+++.+ +|+.|++||.||+.....          .+-.|+.
T Consensus       368 s~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~----------~vv~ai~  437 (457)
T COG0493         368 TEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAA----------LVVWAIA  437 (457)
T ss_pred             ceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchh----------hhhhHHh
Confidence            2  57899999999998874331  22244444 6889999988 999999999999998532          3334888


Q ss_pred             HHHHHHHHHh
Q 018652          230 SAQHCIKALL  239 (352)
Q Consensus       230 ~g~~aa~~i~  239 (352)
                      +|+.+|+.|.
T Consensus       438 eGr~aak~i~  447 (457)
T COG0493         438 EGREAAKAID  447 (457)
T ss_pred             hchHHHHhhh
Confidence            8888887764

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.37  E-value=2.2e-12  Score=119.79  Aligned_cols=164  Identities=21%  Similarity=0.334  Sum_probs=94.8

Q ss_pred             ccCCceEEEECCC------cEEEeC----CCeEEecCeEEEccCCCCCCCCCCCCC-C-CCcEEEecCHHHHHHHHHhhc
Q 018652            2 IYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTASRFPEKIGG-Y-LPGVHYIRDVADADALISSLE   69 (352)
Q Consensus         2 ~~~~~V~~id~~~------~~V~~~----~g~~~~yd~lViAtG~~~~~~~~~~g~-~-~~~v~~~~~~~~~~~~~~~~~   69 (352)
                      .++++|++|++..      ..|.+.    +++.+.++.||||||..|. +|..... . .+.+++..++....   ....
T Consensus       113 ~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~-iP~~~~~~~~~~~v~Hss~~~~~~---~~~~  188 (341)
T PF13434_consen  113 RYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR-IPEWFQDLPGSPRVFHSSEYLSRI---DQSL  188 (341)
T ss_dssp             EESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE----GGGGGGTT-TTEEEGGGHHHHH---T---
T ss_pred             EECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC-CCcchhhcCCCCCEEEehHhhhcc---cccc
Confidence            5788999998655      367763    4568999999999999886 4543221 1 25677654433221   1245


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCcccc--------cccCHHH------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ--------RLFTPSL------------------------  115 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~~~--------~~~~~~~------------------------  115 (352)
                      ..++|+|||||.+|.|++..|.+.+.  +|+++.|++.+.+        ..+.|+.                        
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny  268 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNY  268 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTS
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcC
Confidence            78999999999999999999998875  7999999854422        1233332                        


Q ss_pred             -------HHHHHHH------HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---C--CEEEcCEEEEccCCC
Q 018652          116 -------AQRYEQL------YQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAK  170 (352)
Q Consensus       116 -------~~~l~~~------l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~  170 (352)
                             .+.+.+.      ..+..++++.+++|++++..+++.+ .+.+.+   +  .++++|.||+|||++
T Consensus       269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--EEEEEESEEEE---EE
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCeEEEecCEEEEcCCcc
Confidence                   2222111      1233578999999999987764433 344433   2  368999999999975

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.36  E-value=9.5e-11  Score=107.17  Aligned_cols=206  Identities=18%  Similarity=0.271  Sum_probs=130.4

Q ss_pred             CccCCceE---EEECCCc---EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeE
Q 018652            1 MIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV   74 (352)
Q Consensus         1 ~~~~~~V~---~id~~~~---~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v   74 (352)
                      ++++++|+   ++|.+..   .+.+.++.++.+..|||++|.+|.-+|......-+.+++..++   ..-+..+...++|
T Consensus       114 ~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f~~l~~~~vfHss~~---~~~~~~~~~~~~V  190 (436)
T COG3486         114 LRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCFRSLIGERVFHSSEY---LERHPELLQKRSV  190 (436)
T ss_pred             cccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHHhCcCccceeehHHH---HHhhHHhhcCceE
Confidence            36789999   5554443   3667788899999999999999864332222212345553221   1112223345559


Q ss_pred             EEECCChHHHHHHHHHHhC----CCcEEEEecCCccccc--------ccCHHHHHHH-----------------------
Q 018652           75 VVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQR--------LFTPSLAQRY-----------------------  119 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~----g~~Vtvv~~~~~~~~~--------~~~~~~~~~l-----------------------  119 (352)
                      .|||+|.+|.|+-..|...    ..++.++.|+..+++.        .+.|+..+++                       
T Consensus       191 ~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~  270 (436)
T COG3486         191 TVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGIS  270 (436)
T ss_pred             EEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccC
Confidence            9999999999999988653    3468889998655431        1222222211                       


Q ss_pred             -------HHHH-------HhCCcEEEcCCeEEEEEecCCCcEEEEEc-----CCCCEEEcCEEEEccCCCCCch-hhhhc
Q 018652          120 -------EQLY-------QQNGVKFVKGASIKNLEAGSDGRVAAVKL-----EDGSTIDADTIVIGIGAKPTVS-PFERV  179 (352)
Q Consensus       120 -------~~~l-------~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-----~~g~~i~~D~vi~a~G~~p~~~-~~~~~  179 (352)
                             -+.|       .+.++.+..++.+..++...+|. ..+.+     ...++++.|.||+|||++...+ +++.+
T Consensus       271 ~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l  349 (436)
T COG3486         271 FDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGL  349 (436)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhH
Confidence                   1111       23568899999999998766664 23333     2234789999999999985444 66554


Q ss_pred             C--Cc-ccCCcEEeCCCCCCC----C-CCEEEecccccc
Q 018652          180 G--LN-SSVGGIQVDGQFRTR----M-PGIFAIGDVAAF  210 (352)
Q Consensus       180 g--l~-~~~g~i~vd~~~~t~----~-~~Iya~GD~a~~  210 (352)
                      .  |. +++|...|+..++..    . -.||+.|-+...
T Consensus       350 ~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht  388 (436)
T COG3486         350 ADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT  388 (436)
T ss_pred             HHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence            3  23 346789998866542    1 259999876543

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.33  E-value=2e-11  Score=124.16  Aligned_cols=149  Identities=15%  Similarity=0.169  Sum_probs=97.9

Q ss_pred             EEecCeEEEccCC-CCCCCCCCCCCCCCcEEEecCHHHHHHHHHh--------hcCCCeEEEECCChHHHHHHHHHHh--
Q 018652           24 LLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG--   92 (352)
Q Consensus        24 ~~~yd~lViAtG~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--------~~~~~~vvVvGgG~~g~e~A~~l~~--   92 (352)
                      ...||+|+||||+ .|+. +.+||.+.++++...++.........        +..+++|+|||||++|+++|.....  
T Consensus       495 ~~gyDAV~IATGA~kpr~-L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~  573 (1028)
T PRK06567        495 DLGFDHIAFCIGAGQPKV-LDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYY  573 (1028)
T ss_pred             hcCCCEEEEeCCCCCCCC-CCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhc
Confidence            3679999999999 5764 56788878888765332211111100        1236799999999999999984332  


Q ss_pred             -------------------------------------------------CCCcEEEEecCCcccccccCHHHHHHHHHHH
Q 018652           93 -------------------------------------------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLY  123 (352)
Q Consensus        93 -------------------------------------------------~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l  123 (352)
                                                                       .| .|+++.|+..--.... +...+.+++. 
T Consensus       574 ~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~-~~~~eEv~~A-  650 (1028)
T PRK06567        574 KKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPAY-KLNHEELIYA-  650 (1028)
T ss_pred             cchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCCC-CCCHHHHHHH-
Confidence                                                             22 2888877652211111 0012334443 


Q ss_pred             HhCCcEEEcCCeEEEEEecCCCcEEEEEcC--------------C-C---------------CEEEcCEEEEccCCCCCc
Q 018652          124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------------D-G---------------STIDADTIVIGIGAKPTV  173 (352)
Q Consensus       124 ~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--------------~-g---------------~~i~~D~vi~a~G~~p~~  173 (352)
                      .+.||++..+....+|..++++++..+++.              + +               .+++||.||+|+|..||+
T Consensus       651 ~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~  730 (1028)
T PRK06567        651 LALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNT  730 (1028)
T ss_pred             HHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcc
Confidence            567999999999999976656766655442              1 1               368999999999999998


Q ss_pred             hhh
Q 018652          174 SPF  176 (352)
Q Consensus       174 ~~~  176 (352)
                      .+.
T Consensus       731 ~~~  733 (1028)
T PRK06567        731 QFD  733 (1028)
T ss_pred             ccc
Confidence            763

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.26  E-value=2.2e-11  Score=121.97  Aligned_cols=203  Identities=22%  Similarity=0.347  Sum_probs=116.3

Q ss_pred             EecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHH--HHHHHh-------hcCCCeEEEECCChHHHHHHHHHHhCC
Q 018652           25 LKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADA--DALISS-------LEKAKKVVVVGGGYIGMEVAAAAVGWK   94 (352)
Q Consensus        25 ~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~-------~~~~~~vvVvGgG~~g~e~A~~l~~~g   94 (352)
                      -.+|.+|+|+|+. |+.+ ++||.+++|++..-.+...  ..+.+.       ..++|+|+|||||.+|-++...-.++|
T Consensus      1869 ~~~daiv~a~gst~prdl-pv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg 1947 (2142)
T KOG0399|consen 1869 KENDAIVLATGSTTPRDL-PVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHG 1947 (2142)
T ss_pred             hccCeEEEEeCCCCCcCC-CCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhc
Confidence            4689999999996 5444 5688889998653222211  111110       136799999999999999998888888


Q ss_pred             CcEEE-Ee--cCC-------cccc---cccCHHHHHHHHHHHHhCCcEEE---------------cCCeEE--EEEecCC
Q 018652           95 LDTTI-IF--PEN-------HLLQ---RLFTPSLAQRYEQLYQQNGVKFV---------------KGASIK--NLEAGSD  144 (352)
Q Consensus        95 ~~Vtv-v~--~~~-------~~~~---~~~~~~~~~~l~~~l~~~gV~~~---------------~~~~v~--~i~~~~~  144 (352)
                      ++-.. ++  +.+       .++|   +.|--++...-.+.+-...-+-+               ++-+..  ++++++.
T Consensus      1948 ~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~ 2027 (2142)
T KOG0399|consen 1948 CKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDK 2027 (2142)
T ss_pred             cceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCC
Confidence            65332 22  111       1121   11111111111111111111100               111111  2223333


Q ss_pred             CcEEEEEcCCC-CEEEcCEEEEccCCC-CCchhhhhcCCccc-CCcEEeC-CCCCCCCCCEEEeccccccCCccCCcccc
Q 018652          145 GRVAAVKLEDG-STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTAR  220 (352)
Q Consensus       145 ~~~~~v~~~~g-~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~vd-~~~~t~~~~Iya~GD~a~~~~~~~~~~~~  220 (352)
                      |+..-++..+. +.++||++|++.|+. |.....++++++.+ ++.|.+- +.+.|++++|||+|||.......      
T Consensus      2028 g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslv------ 2101 (2142)
T KOG0399|consen 2028 GRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLV------ 2101 (2142)
T ss_pred             CceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEE------
Confidence            33322333332 468999999999986 55456778888876 5556653 56889999999999998765432      


Q ss_pred             cccHHHHHHHHHHHHHHH
Q 018652          221 VEHVDHARQSAQHCIKAL  238 (352)
Q Consensus       221 ~~~~~~A~~~g~~aa~~i  238 (352)
                      +  |  |++.|+.+|+.+
T Consensus      2102 v--w--ai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2102 V--W--AIQEGRQAARQV 2115 (2142)
T ss_pred             E--E--EehhhhHHHHHH
Confidence            3  3  556666666654

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.22  E-value=3.4e-10  Score=107.70  Aligned_cols=159  Identities=15%  Similarity=0.133  Sum_probs=111.9

Q ss_pred             EEEECCChHHHHHH-HHHH----hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652           74 VVVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  148 (352)
Q Consensus        74 vvVvGgG~~g~e~A-~~l~----~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~  148 (352)
                      =.|++.+.+|+|.+ ..+.    ++|.+|+++...+..++.   .++.+.+.+.+++.|+++++++.|.+++.. ++.+.
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~  293 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVT  293 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEE
Confidence            36789999999999 6564    479999999888777653   378888999999999999999999999854 34555


Q ss_pred             EEEcCCCC--EEEcCEEEEccCCCCCchhh-----------------------------------hhcCCcccCCcEEeC
Q 018652          149 AVKLEDGS--TIDADTIVIGIGAKPTVSPF-----------------------------------ERVGLNSSVGGIQVD  191 (352)
Q Consensus       149 ~v~~~~g~--~i~~D~vi~a~G~~p~~~~~-----------------------------------~~~gl~~~~g~i~vd  191 (352)
                      .+...+|+  .+++|.+|+|+|..+...+.                                   ...|+..|+....+|
T Consensus       294 ~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~  373 (422)
T PRK05329        294 AVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLD  373 (422)
T ss_pred             EEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCccc
Confidence            55555553  58999999999987654331                                   122333333333344


Q ss_pred             CCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          192 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       192 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ...++..+|+||+|++...+++..-..    .-..|...|-.|+++|..
T Consensus       374 ~~g~~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        374 SQGGPVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAE  418 (422)
T ss_pred             CCCCeeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHH
Confidence            444456899999999998776532111    112367777777777763

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.09  E-value=1.9e-10  Score=99.22  Aligned_cols=97  Identities=25%  Similarity=0.333  Sum_probs=62.9

Q ss_pred             ccCCceEEEECCC--cEEEeCCCeEEecCeEEEccCC--CCCCCCCCCC-CCCCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652            2 IYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHYIRDVADADALISSLEKAKKVVV   76 (352)
Q Consensus         2 ~~~~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~--~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~vvV   76 (352)
                      +++++|++++.++  ..|++++++.+.+|+||+|||.  .|+ .|.+++ ... ...+..++.+.     ....+++|+|
T Consensus       100 ~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h~~~~~~~-----~~~~~k~V~V  172 (203)
T PF13738_consen  100 RFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIHSADWRDP-----EDFKGKRVVV  172 (203)
T ss_dssp             ETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEEGGG-STT-----GGCTTSEEEE
T ss_pred             ccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEehhhcCCh-----hhcCCCcEEE
Confidence            5789999998655  5899999988999999999996  554 455566 323 33333222111     1246799999


Q ss_pred             ECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           77 VGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        77 vGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ||+|.+|+++|..|.+.|.+|+++.|++.
T Consensus       173 VG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  173 VGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             E--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             EcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            99999999999999999999999999863

...

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=99.05  E-value=2.1e-09  Score=78.98  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=64.4

Q ss_pred             eeeeeccCcCCCCcceeeEEeecCcc--cEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHhCCCCCChh
Q 018652          251 YFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA  327 (352)
Q Consensus       251 ~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (352)
                      ||||+||+..       +|++|....  +.+.+|+.+ .+|..+|+++|+++|++. .|.+.++..++++|+.+..+++.
T Consensus         1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~   72 (85)
T PF14759_consen    1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA   72 (85)
T ss_dssp             EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred             CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence            8999999864       999998653  678888876 789999999999999997 89999999999999999999999


Q ss_pred             hhcCCCchHH
Q 018652          328 KLQQASSVEE  337 (352)
Q Consensus       328 ~~~~~~~~~e  337 (352)
                      .+.++..-..
T Consensus        73 ~l~d~~~~L~   82 (85)
T PF14759_consen   73 RLADPSVDLR   82 (85)
T ss_dssp             HHHSTTSHHH
T ss_pred             HhcCCCCChH
Confidence            8888776443

...

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.99  E-value=6.4e-09  Score=95.05  Aligned_cols=99  Identities=23%  Similarity=0.338  Sum_probs=79.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc---c--------ccc----ccCHHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~---~--------~~~----~~~~~~~~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      +++|||||+.|+++|..|++.|.+|+++++.+.   +        .+.    ..+.++...+.+.+++.|+++++ ..+.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            689999999999999999999999999997641   1        111    12357788888999999999998 7899


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      +++..+  ....+.+.+++++.+|.+|+|+|..|+..
T Consensus        81 ~v~~~~--~~~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        81 KVDLSD--RPFKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEecC--CeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            998642  22356777888999999999999988643

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.94  E-value=1.9e-08  Score=92.43  Aligned_cols=111  Identities=15%  Similarity=0.246  Sum_probs=87.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc---------------------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---------------------------------------------  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~---------------------------------------------  105 (352)
                      ...|+|||||+.|+-+|..+++.|.+|++++..+.                                             
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~   82 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE   82 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence            35799999999999999999999999999998722                                             


Q ss_pred             --------------------cccc-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652          106 --------------------LLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  164 (352)
Q Consensus       106 --------------------~~~~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  164 (352)
                                          +++. .-...+.+.+...+++.||+++++++|.+|+.++  ....+.+.+|+++.||.+|
T Consensus        83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~li  160 (408)
T COG2081          83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLI  160 (408)
T ss_pred             HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEE
Confidence                                1221 1123566778888999999999999999998653  4457889999899999999


Q ss_pred             EccCC--CCCc-------hhhhhcCCcc
Q 018652          165 IGIGA--KPTV-------SPFERVGLNS  183 (352)
Q Consensus       165 ~a~G~--~p~~-------~~~~~~gl~~  183 (352)
                      +|+|-  -|.+       +++++.|++.
T Consensus       161 lAtGG~S~P~lGstg~gy~iA~~~G~~I  188 (408)
T COG2081         161 LATGGKSWPKLGSTGFGYPIARQFGHTI  188 (408)
T ss_pred             EecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence            99994  4532       3577777664

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.75  E-value=8e-08  Score=91.68  Aligned_cols=99  Identities=26%  Similarity=0.396  Sum_probs=73.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCcc-ccc-ccCHHHH---------HHHHHHHHhCCcEEEcCCeEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL-LQR-LFTPSLA---------QRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~-~~~-~~~~~~~---------~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      .++++|||||+.|+.+|..|++.+.  +|+++++.+.+ ..+ .+...+.         ..-.+.+.+.+|+++.++.|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            5689999999999999999999876  79999876532 111 1111110         001344677899999999999


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      .++..  .+  .+.+++|+++.+|.+|+|||.+|..
T Consensus        83 ~id~~--~~--~v~~~~g~~~~yd~LViATGs~~~~  114 (396)
T PRK09754         83 TLGRD--TR--ELVLTNGESWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEECC--CC--EEEECCCCEEEcCEEEEccCCCCCC
Confidence            99753  22  5667888899999999999999863

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.72  E-value=1.1e-07  Score=90.26  Aligned_cols=109  Identities=19%  Similarity=0.338  Sum_probs=71.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc----------------------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL----------------------------------------------  106 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~----------------------------------------------  106 (352)
                      +|+|||||++|+-+|..+++.|.+|+|+++++++                                              
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            5899999999999999999999999999988221                                              


Q ss_pred             --------------------cccc-cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652          107 --------------------LQRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  165 (352)
Q Consensus       107 --------------------~~~~-~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  165 (352)
                                          .|.. -..++.+.+.+.+++.||+++++++|.++... ++....|.+++++.+.||.||+
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence                                1111 12345577788889999999999999999865 4455678887778999999999


Q ss_pred             ccCCCCCc---------hhhhhcCCc
Q 018652          166 GIGAKPTV---------SPFERVGLN  182 (352)
Q Consensus       166 a~G~~p~~---------~~~~~~gl~  182 (352)
                      |+|.....         .+++++|..
T Consensus       161 AtGG~S~p~~GS~G~gy~~a~~lGh~  186 (409)
T PF03486_consen  161 ATGGKSYPKTGSDGSGYRIAKKLGHT  186 (409)
T ss_dssp             ----SSSGGGT-SSHHHHHHHHTT--
T ss_pred             ecCCCCccccCCCcHHHHHHHHCCCc
Confidence            99976432         346666654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.71  E-value=1.5e-06  Score=77.59  Aligned_cols=165  Identities=19%  Similarity=0.238  Sum_probs=103.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc----------ccc---------------------------cCH
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------QRL---------------------------FTP  113 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~----------~~~---------------------------~~~  113 (352)
                      ..+|+|||+|+.|+-+|..|++.|.+|.++++...+.          +..                           ...
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            5679999999999999999999999999999875431          000                           112


Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC-cEEEEEcC-----------CCCEEEcCEEEEccCCCCCc-hhh-hhc
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLE-----------DGSTIDADTIVIGIGAKPTV-SPF-ERV  179 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~-~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~-~~~-~~~  179 (352)
                      ++.+.+.+...+.|++++.++.+.++...++. ++..+...           +...++++.||.|+|..... .++ +..
T Consensus       101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~  180 (254)
T TIGR00292       101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI  180 (254)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence            34455666677889999999999998754332 46666543           12478999999999976532 232 232


Q ss_pred             CCcccC------CcEEeCC--CC---CC--CCCCEEEeccccccC--CccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          180 GLNSSV------GGIQVDG--QF---RT--RMPGIFAIGDVAAFP--LKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       180 gl~~~~------g~i~vd~--~~---~t--~~~~Iya~GD~a~~~--~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ++....      +....+.  .+   .|  -+|++|++|=.+.-.  .+..|+     .+..-...|+.+|+.++.
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp-----~fg~m~~sg~~~a~~~~~  251 (254)
T TIGR00292       181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGP-----IFGGMLLSGKHVAEQILE  251 (254)
T ss_pred             CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCc-----hHHHHHHhhHHHHHHHHH
Confidence            322110      0111110  00   12  379999999876532  222222     222223468888887763

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.71  E-value=2.2e-07  Score=91.62  Aligned_cols=101  Identities=24%  Similarity=0.353  Sum_probs=80.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC--Cccc-----------ccccCHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~--~~~~-----------~~~~~~~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      ...+|+|||||+.|+.+|..+++.|.+|+++...  ..+.           +...++++.+.+.+.+++.|++++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            3478999999999999999999999999999642  1111           11234567788888899999999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      .+++..++  ...+.+++|+.+.+|.+|+|+|..|.
T Consensus       291 ~~I~~~~~--~~~v~~~~g~~i~~d~lIlAtGa~~~  324 (515)
T TIGR03140       291 KKIETEDG--LIVVTLESGEVLKAKSVIVATGARWR  324 (515)
T ss_pred             EEEEecCC--eEEEEECCCCEEEeCEEEECCCCCcC
Confidence            99975432  23567788889999999999999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.69  E-value=1.3e-07  Score=81.39  Aligned_cols=98  Identities=20%  Similarity=0.355  Sum_probs=67.7

Q ss_pred             EEECCChHHHHHHHHHHhCCCc-EEEEecCCcccc--------------c----------------------------cc
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQ--------------R----------------------------LF  111 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~~~~~--------------~----------------------------~~  111 (352)
                      +|||+|+.|+-+|..|.+.|.+ ++++++++.+..              .                            ..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999999 999998733200              0                            01


Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC--CCCch
Q 018652          112 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTVS  174 (352)
Q Consensus       112 ~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~~  174 (352)
                      .+++.+++++..++.++++.++++|+++..++++  ..|++++++++.||.||+|+|.  .|+..
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p  143 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP  143 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence            1245577888889999999999999999987555  5788999988999999999997  55543

...

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.69  E-value=1e-06  Score=78.81  Aligned_cols=164  Identities=19%  Similarity=0.203  Sum_probs=102.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------ccCH
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP  113 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-------------------------------------~~~~  113 (352)
                      ...|+|||+|+.|+-+|..|++.|.+|.++++...+-..                                     .-..
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            467999999999999999999999999999977543110                                     0112


Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-----------CCCEEEcCEEEEccCCCCCch-hh-hhcC
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ERVG  180 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-~~-~~~g  180 (352)
                      .+...+.+...+.|++++.++.+..+...+++++..+...           +...+.++.||.|+|...... .+ +...
T Consensus       105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~  184 (257)
T PRK04176        105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP  184 (257)
T ss_pred             HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence            3445566667888999999999999875444455554432           224799999999999765421 12 2111


Q ss_pred             ---Cccc-CCc--------EEeCCCCCCCCCCEEEeccccccCC--ccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          181 ---LNSS-VGG--------IQVDGQFRTRMPGIFAIGDVAAFPL--KMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       181 ---l~~~-~g~--------i~vd~~~~t~~~~Iya~GD~a~~~~--~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                         .... .+.        ..|+..-+ -.|++|++|=.+....  +..|+     .+..-...|+.+|+.++.
T Consensus       185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~~~rmg~-----~fg~m~~sg~~~a~~~~~  252 (257)
T PRK04176        185 ELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHGLPRMGP-----IFGGMLLSGKKVAELILE  252 (257)
T ss_pred             CcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcCCCccCc-----hhHhHHHhHHHHHHHHHH
Confidence               1110 011        11222111 3699999998876322  22222     222223467888877764

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.68  E-value=3e-07  Score=90.75  Aligned_cols=100  Identities=25%  Similarity=0.364  Sum_probs=81.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC--Ccc-----------cccccCHHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~--~~~-----------~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      ..+++|||||+.|+.+|.++++.|.+|+++.+.  ...           .+...++++.+.+.+.+++.|++++.++++.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            358999999999999999999999999999753  111           1112356788889999999999999999999


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ++...+  ....+.+.+|+++.+|.+|+|+|.+|.
T Consensus       291 ~I~~~~--~~~~V~~~~g~~i~a~~vViAtG~~~r  323 (517)
T PRK15317        291 KLEPAA--GLIEVELANGAVLKAKTVILATGARWR  323 (517)
T ss_pred             EEEecC--CeEEEEECCCCEEEcCEEEECCCCCcC
Confidence            998643  233667788889999999999999875

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.65  E-value=2.6e-07  Score=89.49  Aligned_cols=102  Identities=24%  Similarity=0.432  Sum_probs=72.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcc------ccccc----C--HHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL------LQRLF----T--PSLAQRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~------~~~~~----~--~~~~~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      ++++|||||+.|+.+|..|++++  .+|+|+++++.+      ++...    .  .++.....+.+++.||+++.++.+.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            37999999999999999999875  489999988753      11111    1  1122233466788999999999999


Q ss_pred             EEEecCCCcEEEEEc-CCCCEEE--cCEEEEccCCCCCchh
Q 018652          138 NLEAGSDGRVAAVKL-EDGSTID--ADTIVIGIGAKPTVSP  175 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~-~~g~~i~--~D~vi~a~G~~p~~~~  175 (352)
                      +++.++ .. ..+.. .+++.++  +|.+|+|||.+|+...
T Consensus        81 ~id~~~-~~-v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~  119 (444)
T PRK09564         81 KVDAKN-KT-ITVKNLKTGSIFNDTYDKLMIATGARPIIPP  119 (444)
T ss_pred             EEECCC-CE-EEEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence            998542 22 23322 2356666  9999999999987543

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=98.64  E-value=6.2e-08  Score=87.97  Aligned_cols=66  Identities=29%  Similarity=0.445  Sum_probs=49.0

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHH-------HHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652           25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-------DALISSLEKAKKVVVVGGGYIGMEVAAAAV   91 (352)
Q Consensus        25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~-------~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~   91 (352)
                      -.||.+|||+|+.-.+-..+||++++||+..+.+-..       +.+.-.+ .+.+|+|||.|++++++|..|.
T Consensus       107 ~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dl-s~~~vvIvG~GNVAlDvARiLl  179 (468)
T KOG1800|consen  107 DNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDL-SGRKVVIVGNGNVALDVARILL  179 (468)
T ss_pred             hcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCccc-ccceEEEEccCchhhhhhhhhh
Confidence            3799999999997655567899999999876543321       1111122 3789999999999999999875

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.60  E-value=3.1e-06  Score=82.09  Aligned_cols=103  Identities=15%  Similarity=0.179  Sum_probs=76.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------  109 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----------------------------------------  109 (352)
                      ..++|+|||+|++|+-+|..|.+.|.+|+++++++.+-..                                        
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            4688999999999999999999999999999976422100                                        


Q ss_pred             ----c---------------cCHHHHHHHHHHHHhCCcE--EEcCCeEEEEEecCCCcEEEEEcCCC--C--EEEcCEEE
Q 018652          110 ----L---------------FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDG--S--TIDADTIV  164 (352)
Q Consensus       110 ----~---------------~~~~~~~~l~~~l~~~gV~--~~~~~~v~~i~~~~~~~~~~v~~~~g--~--~i~~D~vi  164 (352)
                          .               -..++.+++++..+..|+.  +.++++|+++++.+ +. ..|.+.++  .  +..+|.||
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~-w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GK-WRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-Ce-EEEEEEcCCCceEEEEcCEEE
Confidence                0               0135667788888888988  88999999998642 32 34554432  2  46799999


Q ss_pred             EccC--CCCCch
Q 018652          165 IGIG--AKPTVS  174 (352)
Q Consensus       165 ~a~G--~~p~~~  174 (352)
                      +|+|  ..|+.+
T Consensus       167 vAtG~~~~P~~P  178 (461)
T PLN02172        167 VCNGHYTEPNVA  178 (461)
T ss_pred             EeccCCCCCcCC
Confidence            9999  466644

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.60  E-value=2.6e-07  Score=87.12  Aligned_cols=97  Identities=20%  Similarity=0.329  Sum_probs=72.5

Q ss_pred             eEEEECCChHHHHHHHHHHhC---CCcEEEEecCCccc-cccc---------CHHHHHHHHHHHHhCCcEEEcCCeEEEE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL-QRLF---------TPSLAQRYEQLYQQNGVKFVKGASIKNL  139 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~---g~~Vtvv~~~~~~~-~~~~---------~~~~~~~l~~~l~~~gV~~~~~~~v~~i  139 (352)
                      +|+|||||+.|+.+|..|+++   +.+|+|+++++... ...+         ..++...+.+.+++.||+++.+ .++++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999999643   68899999876431 1111         1123333556677889999875 78999


Q ss_pred             EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      +...  +  .|.+.+|+++++|.+|+|+|.+|+..
T Consensus        80 d~~~--~--~V~~~~g~~~~yD~LviAtG~~~~~~  110 (364)
T TIGR03169        80 DPDR--R--KVLLANRPPLSYDVLSLDVGSTTPLS  110 (364)
T ss_pred             eccc--C--EEEECCCCcccccEEEEccCCCCCCC
Confidence            7542  2  57788898899999999999998754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.59  E-value=2.5e-06  Score=80.55  Aligned_cols=227  Identities=20%  Similarity=0.284  Sum_probs=130.8

Q ss_pred             cCCceEEEECC----CcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcE-EEecCHHHHHHHHHhhcCCCeEEEE
Q 018652            3 YQDPVTSIDIE----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKKVVVV   77 (352)
Q Consensus         3 ~~~~V~~id~~----~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v-~~~~~~~~~~~~~~~~~~~~~vvVv   77 (352)
                      .+++++++.+.    ...+++.+|....+|-+|+|||..+...+. -..+.++- -++.+...... +..+....+|+|+
T Consensus       125 ~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~-ld~v~~~drVli~  202 (474)
T COG4529         125 IREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP-AARDLKGSPRLIADPYPANA-LDGVDADDRVLIV  202 (474)
T ss_pred             EeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch-hhhccCCCcceeccccCCcc-cccccCCCceEEe
Confidence            45566666655    236777889989999999999987543222 11222221 12333332322 2234556679999


Q ss_pred             CCChHHHHHHHHHHhCCC--cEEEEecCCccccc----------------------------------------------
Q 018652           78 GGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR----------------------------------------------  109 (352)
Q Consensus        78 GgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~~~~----------------------------------------------  109 (352)
                      |+|.+.++....|+++|+  +||++.|.. +.++                                              
T Consensus       203 GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~  281 (474)
T COG4529         203 GSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVV  281 (474)
T ss_pred             cCCchhHHHHHHHhccCCccceEEEeccc-cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999999999999875  589998872 1000                                              


Q ss_pred             -----------------------------------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-
Q 018652          110 -----------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-  153 (352)
Q Consensus       110 -----------------------------------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-  153 (352)
                                                         -+.+.+...+.+.+.+.-++++- .++..|.....+........ 
T Consensus       282 D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~a-g~~~~i~~~~eg~~v~~r~rg  360 (474)
T COG4529         282 DGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRFRLAPAVQAAVPQLLAEGLLELVA-GRVVSIDREGEGRAVTYRERG  360 (474)
T ss_pred             HhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHhhhhHHHHhhhhHHhhcchhheec-CceeecccccCCceEEeeccc
Confidence                                               01112222222222222334443 34566655444432222222 


Q ss_pred             -CC-CEEEcCEEEEccCCCCCch-----hhh---hcCCcc-c--CCcEEeCCCCCC------CCCCEEEeccccccCCcc
Q 018652          154 -DG-STIDADTIVIGIGAKPTVS-----PFE---RVGLNS-S--VGGIQVDGQFRT------RMPGIFAIGDVAAFPLKM  214 (352)
Q Consensus       154 -~g-~~i~~D~vi~a~G~~p~~~-----~~~---~~gl~~-~--~g~i~vd~~~~t------~~~~Iya~GD~a~~~~~~  214 (352)
                       +. +.+++|.||-|+|..+...     ++.   +.|+.. +  ..|+.|++..+.      ..++.|++|-.+......
T Consensus       361 ~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~e  440 (474)
T COG4529         361 KQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWE  440 (474)
T ss_pred             cCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhh
Confidence             12 3689999999999876432     333   334432 2  467888887664      468899999888654211


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHh
Q 018652          215 YDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       215 ~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                            +..+..-..|+..+|..++
T Consensus       441 ------i~~vP~v~~qa~~~A~~l~  459 (474)
T COG4529         441 ------IDGVPDVRVQAARLAAQLA  459 (474)
T ss_pred             ------hccChHHHHHHHHHHHHHh
Confidence                  2233334566666666666

>PRK06847 hypothetical protein; Provisional

Probab=98.58  E-value=8.4e-07  Score=83.91  Aligned_cols=102  Identities=25%  Similarity=0.344  Sum_probs=78.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-----------------------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------------------  108 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-----------------------------------------  108 (352)
                      +.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+..                                         
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g   82 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG   82 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence            357899999999999999999999999999997632100                                         


Q ss_pred             ----cc----------------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652          109 ----RL----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  168 (352)
Q Consensus       109 ----~~----------------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  168 (352)
                          ..                ..+.+.+.+.+.+.+.|++++.++++++++..++ . ..+.+.+|+++.+|.||.|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~-~~v~~~~g~~~~ad~vI~AdG  160 (375)
T PRK06847         83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-G-VTVTFSDGTTGRYDLVVGADG  160 (375)
T ss_pred             CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-E-EEEEEcCCCEEEcCEEEECcC
Confidence                00                0124455666777778999999999999985433 2 357788999999999999999


Q ss_pred             CCCCc
Q 018652          169 AKPTV  173 (352)
Q Consensus       169 ~~p~~  173 (352)
                      ..+..
T Consensus       161 ~~s~~  165 (375)
T PRK06847        161 LYSKV  165 (375)
T ss_pred             CCcch
Confidence            87754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.58  E-value=3.9e-07  Score=87.73  Aligned_cols=100  Identities=23%  Similarity=0.353  Sum_probs=72.5

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~----------~~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      ...+++||||||+.|+.+|..|.+.+.+||+|++++...-...          ...+...+.+.++..+++++. .+|++
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~   86 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYD   86 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEE
Confidence            3567899999999999999999877789999998875422111          112333355667778899876 47999


Q ss_pred             EEecCCCcEEEEEc----------CCCCEEEcCEEEEccCCCCCc
Q 018652          139 LEAGSDGRVAAVKL----------EDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       139 i~~~~~~~~~~v~~----------~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      |+..+  +  .|.+          .+|+++++|.+|+|+|.+|+.
T Consensus        87 Id~~~--~--~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~  127 (424)
T PTZ00318         87 VDFEE--K--RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT  127 (424)
T ss_pred             EEcCC--C--EEEEecccccccccCCceEecCCEEEECCCcccCC
Confidence            98542  2  2333          456789999999999999864

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.55  E-value=1.7e-07  Score=90.42  Aligned_cols=100  Identities=21%  Similarity=0.200  Sum_probs=67.7

Q ss_pred             ccCCceEEEECCC----cEEEeCCCeE--EecCeEEEccCCC--CCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCe
Q 018652            2 IYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGCT--ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK   73 (352)
Q Consensus         2 ~~~~~V~~id~~~----~~V~~~~g~~--~~yd~lViAtG~~--~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~   73 (352)
                      .++..|..++.++    .+|+++++..  +.+|+||+|||..  |+ .|.++|.+......+++   .+........+|+
T Consensus       102 ~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G~~~f~g~~~HS---~~~~~~~~~~GKr  177 (443)
T COG2072         102 RFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAGLDEFKGRILHS---ADWPNPEDLRGKR  177 (443)
T ss_pred             EcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCCccCCCceEEch---hcCCCccccCCCe
Confidence            3455566565443    3788888765  4599999999974  32 45445533222112211   1111112347999


Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      |+|||+|.+|+++|..|.+.|.+||++.|++.
T Consensus       178 V~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         178 VLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             EEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            99999999999999999999999999998864

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.55  E-value=2.3e-06  Score=82.17  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=60.9

Q ss_pred             CCcEEEcCCeEEEEEecCCCcEEEEEcC-----------CCC--EEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCC
Q 018652          126 NGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG  192 (352)
Q Consensus       126 ~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----------~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~  192 (352)
                      +.+.+++.....+|.. .++++..+++.           .|+  .++||+|+-++|++...  +.  +++.+ ..+.. .
T Consensus       324 r~i~l~F~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~~--g~pFd-~~~~n-~  396 (506)
T PTZ00188        324 KIIEFIFYFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FA--ENLYN-QSVQM-F  396 (506)
T ss_pred             eEEEEEccCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--CC--CCCcc-ccCCC-C
Confidence            3467777788888874 24566666665           333  68999999999998642  22  22333 12221 1


Q ss_pred             CCCC--CCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652          193 QFRT--RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  238 (352)
Q Consensus       193 ~~~t--~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  238 (352)
                      ..+.  ..|++|++|-+-..|....|.     +...|...+..+.+.+
T Consensus       397 ~grv~~~~~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~  439 (506)
T PTZ00188        397 KEDIGQHKFAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL  439 (506)
T ss_pred             CCcccCCCCCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence            1222  369999999998877654443     2233555555554444

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.54  E-value=3.9e-07  Score=94.07  Aligned_cols=98  Identities=20%  Similarity=0.459  Sum_probs=74.1

Q ss_pred             EEEECCChHHHHHHHHHHhCC---CcEEEEecCCccc-cc-----ccC-----HHHHHHHHHHHHhCCcEEEcCCeEEEE
Q 018652           74 VVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLL-QR-----LFT-----PSLAQRYEQLYQQNGVKFVKGASIKNL  139 (352)
Q Consensus        74 vvVvGgG~~g~e~A~~l~~~g---~~Vtvv~~~~~~~-~~-----~~~-----~~~~~~l~~~l~~~gV~~~~~~~v~~i  139 (352)
                      ++|||+|+.|+.+|..|++++   .+|||+++.+++. .+     .+.     +++.....+.+++.||++++++.|+.|
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            589999999999999988754   6899999887642 11     111     111122346678899999999999999


Q ss_pred             EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh
Q 018652          140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  175 (352)
Q Consensus       140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  175 (352)
                      +..  .+  .|.+.+|+++++|.+|+|||..|+...
T Consensus        81 d~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p~  112 (785)
T TIGR02374        81 DTD--QK--QVITDAGRTLSYDKLILATGSYPFILP  112 (785)
T ss_pred             ECC--CC--EEEECCCcEeeCCEEEECCCCCcCCCC
Confidence            854  22  567788989999999999999987543

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.53  E-value=3.2e-06  Score=79.34  Aligned_cols=179  Identities=25%  Similarity=0.402  Sum_probs=107.6

Q ss_pred             EEecCeEEEccCCCCCCCCCCC--C-CCCCcEEEecCHHHHHHHHHh-------------hcCCCeEEEE---CCCh---
Q 018652           24 LLKYGSLIVATGCTASRFPEKI--G-GYLPGVHYIRDVADADALISS-------------LEKAKKVVVV---GGGY---   81 (352)
Q Consensus        24 ~~~yd~lViAtG~~~~~~~~~~--g-~~~~~v~~~~~~~~~~~~~~~-------------~~~~~~vvVv---GgG~---   81 (352)
                      ++..-.+|+|||-.++......  | ...+++.+-   .+.+++...             ...+++|+.|   |+-.   
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~---lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~  374 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN---LELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV  374 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCCcchhhH---HHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence            4667789999998765322111  1 113444322   223333210             1245677765   5433   


Q ss_pred             -----------HHHHHHHHHHhC--CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652           82 -----------IGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  148 (352)
Q Consensus        82 -----------~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~  148 (352)
                                 .++--|....++  ..+|+++...-    |.++....+++.+.-++.||+++.+. +.+|...+++. .
T Consensus       375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDi----RafG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~-l  448 (622)
T COG1148         375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDI----RAFGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKK-L  448 (622)
T ss_pred             CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEe----eccCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCe-e
Confidence                       122223333333  35678776654    34566666777776668999999875 66666555555 2


Q ss_pred             EEEcCC---C--CEEEcCEEEEccCCCCCch---hhhhcCCccc-CCcEEeC-CCCC---CCCCCEEEeccccccC
Q 018652          149 AVKLED---G--STIDADTIVIGIGAKPTVS---PFERVGLNSS-VGGIQVD-GQFR---TRMPGIFAIGDVAAFP  211 (352)
Q Consensus       149 ~v~~~~---g--~~i~~D~vi~a~G~~p~~~---~~~~~gl~~~-~g~i~vd-~~~~---t~~~~Iya~GD~a~~~  211 (352)
                      .|..+|   |  .++++|+|++++|..|...   +.+-+||..+ +|++... +.++   |+.++||.+|-|..+.
T Consensus       449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPk  524 (622)
T COG1148         449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPK  524 (622)
T ss_pred             EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCc
Confidence            343333   3  3789999999999998542   4566788765 6777754 5554   5889999999776543

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.52  E-value=6.4e-07  Score=92.72  Aligned_cols=102  Identities=19%  Similarity=0.432  Sum_probs=76.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC----CCcEEEEecCCccc------ccccC----HHHHHHHHHHHHhCCcEEEcCCeE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLL------QRLFT----PSLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtvv~~~~~~~------~~~~~----~~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      .++++|||+|+.|+.+|..|+++    +.+||++.+.+++.      +..+.    .++.....+++++.||+++.++.+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            35899999999999999999764    46899998887642      11111    122222345678899999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                      ..++..  .+  .|.+.+|+++++|.+|+|||.+|....+
T Consensus        83 ~~Id~~--~~--~V~~~~G~~i~yD~LVIATGs~p~~p~i  118 (847)
T PRK14989         83 ITINRQ--EK--VIHSSAGRTVFYDKLIMATGSYPWIPPI  118 (847)
T ss_pred             EEEeCC--Cc--EEEECCCcEEECCEEEECCCCCcCCCCC
Confidence            999753  22  5667888899999999999999875433

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.50  E-value=6.5e-07  Score=84.08  Aligned_cols=99  Identities=23%  Similarity=0.437  Sum_probs=76.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccccc----------cCHHHHHHHHHHHHhCC-cEEEcCCeE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNG-VKFVKGASI  136 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~~~----------~~~~~~~~l~~~l~~~g-V~~~~~~~v  136 (352)
                      ..+++||+|||+.|+.+|..|.+.-  .+||+|++.+..+-..          -..++...+.+.+++.+ |+++.+ +|
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V   80 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EV   80 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EE
Confidence            3578999999999999999999874  8899999886532211          12344456777888565 999875 58


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      +.|+.+  ++  .|.+.++..++||.+|+++|..+++
T Consensus        81 ~~ID~~--~k--~V~~~~~~~i~YD~LVvalGs~~~~  113 (405)
T COG1252          81 TDIDRD--AK--KVTLADLGEISYDYLVVALGSETNY  113 (405)
T ss_pred             EEEccc--CC--EEEeCCCccccccEEEEecCCcCCc
Confidence            999754  22  6778887789999999999999875

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.48  E-value=3.5e-07  Score=87.43  Aligned_cols=159  Identities=21%  Similarity=0.273  Sum_probs=96.8

Q ss_pred             CccCCceEEEECCC---cEEEeCCC----eEEecCeEEEccCCCC-CCCCCCCCC---CCCcEEEecCHHHHHHHHHhhc
Q 018652            1 MIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRFPEKIGG---YLPGVHYIRDVADADALISSLE   69 (352)
Q Consensus         1 ~~~~~~V~~id~~~---~~V~~~~g----~~~~yd~lViAtG~~~-~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~~~   69 (352)
                      +.++++|..+++..   ..|.+.+.    ...-||.|++|||... .++|.+++.   ..+|- .+   +..+.-.....
T Consensus       109 i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~-~i---HS~~Yk~~e~f  184 (448)
T KOG1399|consen  109 INFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGK-II---HSHDYKSPEKF  184 (448)
T ss_pred             eEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCc-ce---ehhhccCcccc
Confidence            45778888888654   36766543    4678999999999883 235555442   22331 11   11111122234


Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+|+|+|||.|.+|++++..+++...+|++..+ ...... ..       ...+ -.++..+..  +..++.  ++   .
T Consensus       185 ~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~-------~~~~-~~~~~~~~~--i~~~~e--~~---~  247 (448)
T KOG1399|consen  185 RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EP-------PEIL-GENLWQVPS--IKSFTE--DG---S  247 (448)
T ss_pred             cCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-cc-------ccee-ecceEEccc--cccccC--cc---e
Confidence            689999999999999999999988888887654 100000 00       0000 112222222  444432  22   3


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhhhhcC
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPFERVG  180 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g  180 (352)
                      +.+.++....+|.+|+|||+.-..++++..+
T Consensus       248 ~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~  278 (448)
T KOG1399|consen  248 VFEKGGPVERVDRIIFCTGYKYKFPFLETLG  278 (448)
T ss_pred             EEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence            4556777889999999999998777776553

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.48  E-value=1.4e-06  Score=81.51  Aligned_cols=95  Identities=25%  Similarity=0.443  Sum_probs=70.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC-Ccc-----------------------------------------c---
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-----------------------------------------L---  107 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~-----------------------------------------~---  107 (352)
                      +|+|||||..|+|.|..+++.|.+|.++... +.+                                         +   
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            4899999999999999999999999999533 110                                         0   


Q ss_pred             --c------cccC-HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          108 --Q------RLFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       108 --~------~~~~-~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                        +      .+.+ ..+...+++.+++ .+++++ ..+|+++.. +++++..|.+.+|+.+.+|.||++||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence              0      0122 2455667777777 589987 467999975 468899999999999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.47  E-value=6.4e-07  Score=93.68  Aligned_cols=93  Identities=24%  Similarity=0.197  Sum_probs=72.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||+|+.|+.+|..|++.|++|||+++.+++..        ..++.++.+...+.+++.||++++|+.+..   
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~---  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK---  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence            479999999999999999999999999999998764422        113556666777788999999998864311   


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCC-CC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~  172 (352)
                             .+.+++.....+|.|++|+|.. |.
T Consensus       382 -------dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        382 -------TATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence                   3556665556899999999984 54

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.46  E-value=1.3e-06  Score=84.44  Aligned_cols=101  Identities=14%  Similarity=0.165  Sum_probs=68.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCccccc--ccCHHH-------HHHH----HHHHHhCCcEEEcCCeE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR--LFTPSL-------AQRY----EQLYQQNGVKFVKGASI  136 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~--~~~~~~-------~~~l----~~~l~~~gV~~~~~~~v  136 (352)
                      ++|+|||||+.|+.+|..|+++  +.+|+|+++++.+.-.  .++.-.       ...+    .+..++.||+++.+++|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            4799999999999999999887  5789999988643210  011110       1111    23335679999999999


Q ss_pred             EEEEecCCCcEEEEEcCC-CC--EEEcCEEEEccCCCCCch
Q 018652          137 KNLEAGSDGRVAAVKLED-GS--TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~-g~--~i~~D~vi~a~G~~p~~~  174 (352)
                      ++|+.+  .+...+...+ ++  ++++|.+|+|||.+|+..
T Consensus        82 ~~Id~~--~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~  120 (438)
T PRK13512         82 IAINDE--RQTVTVLNRKTNEQFEESYDKLILSPGASANSL  120 (438)
T ss_pred             EEEECC--CCEEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence            999854  2322333222 22  468999999999998743

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.46  E-value=7.2e-07  Score=83.76  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=70.0

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc--------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~--------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      ..+++++|||+|+.|+++|..|++.|.+|+++++.+.+....        .+.+......+.+.+.|++++.++.+..+.
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~   95 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE   95 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence            467899999999999999999999999999999887653211        122333334455677799999998876553


Q ss_pred             e---cCCCcE--EEEEcCCCCEEEcCEEEEccCCC-CC
Q 018652          141 A---GSDGRV--AAVKLEDGSTIDADTIVIGIGAK-PT  172 (352)
Q Consensus       141 ~---~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~-p~  172 (352)
                      .   ..+...  ..+..+ +..+.+|.||+|+|.. |.
T Consensus        96 ~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~  132 (352)
T PRK12770         96 PLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR  132 (352)
T ss_pred             ccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC
Confidence            2   111111  011111 1247899999999984 54

>PRK07236 hypothetical protein; Provisional

Probab=98.44  E-value=1.8e-06  Score=82.06  Aligned_cols=102  Identities=22%  Similarity=0.325  Sum_probs=73.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----ccCHHHHHHHH------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQRYE------------------------  120 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~~~~~~~~~l~------------------------  120 (352)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+++.+.....     .+.+...+.+.                        
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g   84 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG   84 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence            3578999999999999999999999999999987643211     02222222222                        


Q ss_pred             -------------------HHHHh--CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          121 -------------------QLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       121 -------------------~~l~~--~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                                         +.|.+  .+++++.++++++++..++ . ..+.+.+|+++.+|+||.|-|.....
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~-v~v~~~~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD-R-VTARFADGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC-e-EEEEECCCCEEEeCEEEECCCCCchH
Confidence                               11111  1356889999999986533 3 35788999999999999999987643

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.43  E-value=1.4e-06  Score=81.31  Aligned_cols=65  Identities=31%  Similarity=0.508  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCC
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  181 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl  181 (352)
                      .+.+.+.+.+++.|++++.+++|+++... ++.+..|.+.+|+ +.+|.||+|+|.... .++..++.
T Consensus       148 ~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~  212 (358)
T PF01266_consen  148 RLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL  212 (358)
T ss_dssp             HHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred             chhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence            45566667778899999999999999864 5566669999997 999999999998654 35555544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.42  E-value=1.6e-06  Score=89.94  Aligned_cols=91  Identities=27%  Similarity=0.294  Sum_probs=68.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||||+.|+.+|..|+++|.+|+++++.+.+...        .++.+....-.+.+++.||++++++.+ .+. 
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~-  615 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT-  615 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence            4689999999999999999999999999999987654221        123444455557788899999999866 222 


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                                +.+.+...+|.||+|||..+.
T Consensus       616 ----------le~L~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        616 ----------VEQLKNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             ----------hhhheeccCCEEEECcCCCCC
Confidence                      223334669999999999754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.40  E-value=4.8e-06  Score=75.72  Aligned_cols=97  Identities=21%  Similarity=0.279  Sum_probs=73.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------------------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------------------------  108 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------------------------------------------  108 (352)
                      .|+|||+|+.|+.+|..|++.|.+|+++++.+.+-.                                            
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            589999999999999999999999999998743210                                            


Q ss_pred             -----cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCCEEEcCEEEEccCCCC
Q 018652          109 -----RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       109 -----~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~p  171 (352)
                           ......+.+.+.+.+.+.|++++.+++++++...++ .+ .+.+. ++.++++|.||.|+|...
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence                 001224556677778889999999999999875433 22 33333 345799999999999865

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.40  E-value=2.5e-06  Score=80.83  Aligned_cols=98  Identities=16%  Similarity=0.314  Sum_probs=70.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcc-ccc-ccC---------HHHHH-HHHHHHHhCCcEEEcCCeEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL-LQR-LFT---------PSLAQ-RYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~-~~~-~~~---------~~~~~-~l~~~l~~~gV~~~~~~~v~  137 (352)
                      ++++|||+|+.|+.+|..|++++  .+||++.+++.. ..+ .+.         .++.. ...+.+++.||+++.++.|+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            58999999999999999998864  579999876532 111 111         11111 13355677899999999999


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      +++.. + +  .+.+ +++.+.+|.+|+|||.+|...
T Consensus        83 ~id~~-~-~--~v~~-~~~~~~yd~LVlATG~~~~~p  114 (377)
T PRK04965         83 DIDAE-A-Q--VVKS-QGNQWQYDKLVLATGASAFVP  114 (377)
T ss_pred             EEECC-C-C--EEEE-CCeEEeCCEEEECCCCCCCCC
Confidence            99853 2 2  3443 567899999999999998643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.39  E-value=1.2e-06  Score=85.16  Aligned_cols=90  Identities=22%  Similarity=0.302  Sum_probs=69.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------c-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||||+.|+++|..|+++|.+|+++++.+.+..       . ..+.++.....+.+++.||++++++.+..   
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR---  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence            467999999999999999999999999999998865421       1 13556777777888999999999876521   


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                             .+.+++.. +.+|.||+|+|..
T Consensus       216 -------~v~~~~~~-~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -------DITLDELR-AGYDAVFIGTGAG  236 (457)
T ss_pred             -------ccCHHHHH-hhCCEEEEccCCC
Confidence                   12233333 7899999999985

>PRK06834 hypothetical protein; Provisional

Probab=98.36  E-value=6.2e-06  Score=80.76  Aligned_cols=100  Identities=24%  Similarity=0.362  Sum_probs=75.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc---ccc--------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QRL--------------------------------------  110 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~---~~~--------------------------------------  110 (352)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+++.+.+.   ++.                                      
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            579999999999999999999999999999763210   000                                      


Q ss_pred             ---c-----------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          111 ---F-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       111 ---~-----------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                         +           -+.+.+.+.+.+++.|++++.++++++++.++++  ..+++.+|+++.+|+||.|.|..+..
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~v  158 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLV  158 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCc
Confidence               0           0123344556667789999999999999865443  24667788889999999999998753

>PRK10262 thioredoxin reductase; Provisional

Probab=98.36  E-value=8.7e-06  Score=75.42  Aligned_cols=100  Identities=19%  Similarity=0.277  Sum_probs=71.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC---cc--------cc----cccCHHHHHHHHHHHHhCCcEEEcCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQ----RLFTPSLAQRYEQLYQQNGVKFVKGA  134 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~---~~--------~~----~~~~~~~~~~l~~~l~~~gV~~~~~~  134 (352)
                      ..++|+|||||+.|+.+|..|+++|.++++++...   .+        ++    ....+.+.+.+.+.....++++..+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            46789999999999999999999999999886321   11        01    1123345677778788888888765 


Q ss_pred             eEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          135 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       135 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      .+..++.. ++. ..+..++ ..+.+|.||+|+|..|+.
T Consensus        84 ~v~~v~~~-~~~-~~v~~~~-~~~~~d~vilAtG~~~~~  119 (321)
T PRK10262         84 HINKVDLQ-NRP-FRLTGDS-GEYTCDALIIATGASARY  119 (321)
T ss_pred             EEEEEEec-CCe-EEEEecC-CEEEECEEEECCCCCCCC
Confidence            46677643 222 2344333 368999999999999864

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=2.7e-05  Score=71.20  Aligned_cols=98  Identities=22%  Similarity=0.376  Sum_probs=75.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCc-EEEEecCC-c--------------ccccccCHHHHHHHHHHHHhCCcEEEcCCe
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPEN-H--------------LLQRLFTPSLAQRYEQLYQQNGVKFVKGAS  135 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~-~--------------~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~  135 (352)
                      ..|+|||+|+.|+..|-++.+.+.+ +.+++... .              +-....++++.+.+.+..+..++++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            4699999999999999999999988 44444421 0              011135667788888888888999987 66


Q ss_pred             EEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          136 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       136 v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      +.+++..++  ...|++.+++ +.++.||+|+|..+..
T Consensus        83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~  117 (305)
T COG0492          83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK  117 (305)
T ss_pred             EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence            777775432  5688888888 9999999999998763

>PLN02463 lycopene beta cyclase

Probab=98.36  E-value=5e-06  Score=80.22  Aligned_cols=98  Identities=26%  Similarity=0.299  Sum_probs=73.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-ccc----------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL----------------------------------------  110 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-~~~----------------------------------------  110 (352)
                      -.|+|||+|+.|+.+|..|++.|.+|.++++.+... ++.                                        
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            479999999999999999999999999999764211 100                                        


Q ss_pred             ---cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          111 ---FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       111 ---~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                         ....+.+.+.+.+.+.|++++ ..+|++++..+++  ..|.+++|+++++|.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence               011223455566677899997 4689999854332  4678889989999999999998764

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.35  E-value=5.9e-06  Score=78.71  Aligned_cols=100  Identities=27%  Similarity=0.392  Sum_probs=75.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc-------------c-c-----------------c----------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------L-Q-----------------R----------  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-------------~-~-----------------~----------  109 (352)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+.+             + +                 .          
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            457999999999999999999999999999975310             0 0                 0          


Q ss_pred             ---------cc---------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652          110 ---------LF---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  165 (352)
Q Consensus       110 ---------~~---------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  165 (352)
                               .+               ...+.+.+.+.+++.|++++.++++++++.+++ .+ .+++++|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-RV-RLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-eE-EEEECCCCEEEeCEEEE
Confidence                     00               012334455666778999999999999985433 33 57778888999999999


Q ss_pred             ccCCCCC
Q 018652          166 GIGAKPT  172 (352)
Q Consensus       166 a~G~~p~  172 (352)
                      |.|..+.
T Consensus       164 AdG~~S~  170 (392)
T PRK08773        164 ADGAAST  170 (392)
T ss_pred             ecCCCch
Confidence            9999875

>PRK07045 putative monooxygenase; Reviewed

Probab=98.34  E-value=8.3e-06  Score=77.60  Aligned_cols=102  Identities=22%  Similarity=0.278  Sum_probs=76.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------  108 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------  108 (352)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+..                                          
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~   84 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE   84 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence            34799999999999999999999999999996632100                                          


Q ss_pred             ---cc-------cC-------HHHHHHHHHHHH-hCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          109 ---RL-------FT-------PSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       109 ---~~-------~~-------~~~~~~l~~~l~-~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                         ..       .+       ..+.+.+.+.+. ..|++++++++++.++..+++.+..|++++|+++.+|+||.|.|..
T Consensus        85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~  164 (388)
T PRK07045         85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR  164 (388)
T ss_pred             EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence               00       00       012233344443 3479999999999998766665557888899999999999999987


Q ss_pred             CC
Q 018652          171 PT  172 (352)
Q Consensus       171 p~  172 (352)
                      ..
T Consensus       165 S~  166 (388)
T PRK07045        165 SM  166 (388)
T ss_pred             hH
Confidence            64

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.33  E-value=1.8e-06  Score=83.66  Aligned_cols=92  Identities=22%  Similarity=0.235  Sum_probs=69.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------c-cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~-~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.       + ..+++++.....+.+++.||++++++.+..   
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  208 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK---  208 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence            45789999999999999999999999999999876541       1 114556666677788899999999874410   


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCC-CCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~  172 (352)
                             .+.+.+. ...+|.||+|+|. .|.
T Consensus       209 -------~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       209 -------TATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence                   2333333 3579999999997 565

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.33  E-value=4.7e-06  Score=80.85  Aligned_cols=96  Identities=24%  Similarity=0.384  Sum_probs=68.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc------------------------------C---------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF------------------------------T---------  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~------------------------------~---------  112 (352)
                      ..++|||+|+.|+.+|..++++|.+|+++++. .+-..+.                              .         
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (446)
T TIGR01424         3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKL   81 (446)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHH
Confidence            36899999999999999999999999999974 1111000                              0         


Q ss_pred             --------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          113 --------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       113 --------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                              ..+.+.+++.+++.||+++.+ ++..++..   .+ .+. .+|+.+++|.+|+|||.+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~---~v-~v~-~~g~~~~~d~lIiATGs~p~~p  145 (446)
T TIGR01424        82 LQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPN---TV-EVL-QDGTTYTAKKILIAVGGRPQKP  145 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCC---EE-EEe-cCCeEEEcCEEEEecCCcCCCC
Confidence                    123345566678899999876 45555421   22 232 4677899999999999998644

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.30  E-value=9.2e-06  Score=77.44  Aligned_cols=102  Identities=19%  Similarity=0.252  Sum_probs=74.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------c------------c-----
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R------------L-----  110 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------~------------~-----  110 (352)
                      ...+|+|||||..|+-+|..|++.|.+|+|+++.+.+..                      .            .     
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD   82 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence            356899999999999999999999999999997633200                      0            0     


Q ss_pred             --------cC----------------HHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652          111 --------FT----------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  165 (352)
Q Consensus       111 --------~~----------------~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  165 (352)
                              ++                ..+.+.+.+.+.+. +++++.++.+++++.+++ . ..+.+.+|+++.+|.||.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~-v~v~~~~g~~~~ad~vV~  160 (396)
T PRK08163         83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-G-VTVFDQQGNRWTGDALIG  160 (396)
T ss_pred             CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-c-eEEEEcCCCEEecCEEEE
Confidence                    00                01123334444444 499999999999985433 3 357778888999999999


Q ss_pred             ccCCCCCc
Q 018652          166 GIGAKPTV  173 (352)
Q Consensus       166 a~G~~p~~  173 (352)
                      |.|.....
T Consensus       161 AdG~~S~~  168 (396)
T PRK08163        161 CDGVKSVV  168 (396)
T ss_pred             CCCcChHH
Confidence            99987643

>PRK12831 putative oxidoreductase; Provisional

Probab=98.30  E-value=2.2e-06  Score=83.37  Aligned_cols=93  Identities=24%  Similarity=0.315  Sum_probs=67.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------cc-ccCH-HHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~~-~~~~-~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      .+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+.       +. .++. .+.....+.+++.||++++++.+..  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK--  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence            46799999999999999999999999999999765431       11 0122 2555666778889999999985521  


Q ss_pred             ecCCCcEEEEEcCCC-CEEEcCEEEEccCC-CCC
Q 018652          141 AGSDGRVAAVKLEDG-STIDADTIVIGIGA-KPT  172 (352)
Q Consensus       141 ~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~-~p~  172 (352)
                              .+.+++. +.+.+|.||+|+|. .|.
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence                    1223332 24579999999998 565

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.30  E-value=1.1e-05  Score=80.41  Aligned_cols=98  Identities=29%  Similarity=0.423  Sum_probs=74.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc------------c---cccCHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------Q---RLFTPSLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~------------~---~~~~~~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      ..|+|||||+.|+.+|..|++.|.+|+++++.. +.            +   ...++.+.+.+.+.+++.|++++ ++.+
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V   82 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV   82 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence            579999999999999999999999999999753 21            0   01124566777788888999986 6678


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ..++..  +....+.+.++ .+.+|.+|+|+|..|...
T Consensus        83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~~  117 (555)
T TIGR03143        83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRKL  117 (555)
T ss_pred             EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence            888753  23335666555 589999999999998643

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK08244 hypothetical protein; Provisional

Probab=98.29  E-value=1e-05  Score=79.54  Aligned_cols=101  Identities=22%  Similarity=0.327  Sum_probs=74.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------------------------------------c----
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------------------R----  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------------------------------------~----  109 (352)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..                                      .    
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            4699999999999999999999999999997622100                                      0    


Q ss_pred             -------------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEEcCEEEEccCCCCC
Q 018652          110 -------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 -------------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~  172 (352)
                                   .++ ..+.+.+.+.+++.|++++.++++++++..+++....+...+| +++.+|+||.|.|....
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence                         000 1344556666778899999999999998654443223333356 47999999999999875

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.27  E-value=3.2e-06  Score=82.07  Aligned_cols=92  Identities=18%  Similarity=0.210  Sum_probs=67.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHh--CCCcEEEEecCCcccccc---------cCHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~--~g~~Vtvv~~~~~~~~~~---------~~~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      .+++|+|||+|+.|+.+|..|++  .|++|+|+++.+.+....         ....+...+.+.+++.+|+++.|..+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46799999999999999999987  799999999987653210         1123445566777888999998754411


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                                .+.+++-+ ..+|.||+|+|..+.
T Consensus       105 ----------dvtl~~L~-~~yDaVIlAtGa~~~  127 (491)
T PLN02852        105 ----------DVSLSELR-DLYHVVVLAYGAESD  127 (491)
T ss_pred             ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence                      23343333 469999999999763

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.26  E-value=6.9e-06  Score=78.96  Aligned_cols=92  Identities=12%  Similarity=0.189  Sum_probs=62.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHH-hCCCcEEEEecCCcccccc---cC------HHHHHHHHHHHHhCCcEEEcCCeEEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQRL---FT------PSLAQRYEQLYQQNGVKFVKGASIKNL  139 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~-~~g~~Vtvv~~~~~~~~~~---~~------~~~~~~l~~~l~~~gV~~~~~~~v~~i  139 (352)
                      .+++|+|||+|+.|+.+|..|. +.|++|+++++.+.+..-.   ..      ..+...+...+...+++++.|..+-. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            5789999999999999999764 6799999999987663210   11      24455566666677888875433211 


Q ss_pred             EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                               .+..++= .-.+|.||+|+|..+.
T Consensus       117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 ---------DLKMEEL-RNHYNCVIFCCGASEV  139 (506)
T ss_pred             ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence                     1111111 2379999999998864

>PRK07588 hypothetical protein; Provisional

Probab=98.25  E-value=1.2e-05  Score=76.54  Aligned_cols=98  Identities=23%  Similarity=0.241  Sum_probs=71.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------c----------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------R----------------------------------  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------~----------------------------------  109 (352)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+-.         .                                  
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            699999999999999999999999999997632200         0                                  


Q ss_pred             -cc---------C--------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          110 -LF---------T--------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       110 -~~---------~--------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                       .+         +        ..+.+.+.+.+ ..++++++++++++++..++ .+ .+.+++|+.+.+|+||-|.|...
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRD-GV-RVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCC-eE-EEEECCCCEEEeCEEEECCCCCc
Confidence             00         0        01112222222 34799999999999986533 33 57888999999999999999876


Q ss_pred             Cc
Q 018652          172 TV  173 (352)
Q Consensus       172 ~~  173 (352)
                      ..
T Consensus       159 ~v  160 (391)
T PRK07588        159 HV  160 (391)
T ss_pred             cc
Confidence            54

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.25  E-value=1.3e-05  Score=76.68  Aligned_cols=106  Identities=25%  Similarity=0.383  Sum_probs=78.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCC--CcEEEEecCCccc----------------------------c--------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL----------------------------Q--------------  108 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~----------------------------~--------------  108 (352)
                      +|+|||||+.|+-+|..|++.|  .+|+++++.+...                            .              
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            5899999999999999999985  8999999752100                            0              


Q ss_pred             ----------c--------------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652          109 ----------R--------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  164 (352)
Q Consensus       109 ----------~--------------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  164 (352)
                                .              .....+.+.+.+.+.+.|++++.++++++++..++ . ..+.+++|+++.+|.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~-v~v~~~~g~~~~ad~vI  160 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE-G-VTVTLSDGSVLEARLLV  160 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-E-EEEEECCCCEEEeCEEE
Confidence                      0              00123345566667778999999999999975433 2 35777888899999999


Q ss_pred             EccCCCCCchhhhhcCCc
Q 018652          165 IGIGAKPTVSPFERVGLN  182 (352)
Q Consensus       165 ~a~G~~p~~~~~~~~gl~  182 (352)
                      .|.|....  +.+.+++.
T Consensus       161 ~AdG~~S~--vr~~~g~~  176 (403)
T PRK07333        161 AADGARSK--LRELAGIK  176 (403)
T ss_pred             EcCCCChH--HHHHcCCC
Confidence            99998764  34444543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.25  E-value=1.6e-05  Score=77.51  Aligned_cols=101  Identities=28%  Similarity=0.478  Sum_probs=68.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc----cccccc-----------------------C-----------H
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----LLQRLF-----------------------T-----------P  113 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~----~~~~~~-----------------------~-----------~  113 (352)
                      ++++|||+|+.|+++|..++++|.+|+++++..-    +...+.                       .           +
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   81 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP   81 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence            5799999999999999999999999999997630    000000                       0           0


Q ss_pred             H-----------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCc
Q 018652          114 S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTV  173 (352)
Q Consensus       114 ~-----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~  173 (352)
                      .           ..+.+.+.+++.||+++.+. +..++...+.....|.+.+|+  ++.+|.||+|||.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~  153 (466)
T PRK07845         82 AVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRI  153 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence            0           12234456777899999875 333221112233356666775  79999999999999863

>PRK06116 glutathione reductase; Validated

Probab=98.24  E-value=6.9e-06  Score=79.76  Aligned_cols=95  Identities=25%  Similarity=0.451  Sum_probs=66.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----cc------------------------C--------H-
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LF------------------------T--------P-  113 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~~------------------------~--------~-  113 (352)
                      ..++|||+|+.|+.+|..++++|.+|+++++. .+-..     +.                        .        + 
T Consensus         5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T PRK06116          5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK   83 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence            46999999999999999999999999999975 21000     00                        0        0 


Q ss_pred             ----------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh
Q 018652          114 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  175 (352)
Q Consensus       114 ----------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  175 (352)
                                .+.+.+.+.+++.||+++.+. ++.++.   .   .|++ +|+++.+|.+|+|||.+|+.+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~~---~---~v~~-~g~~~~~d~lViATGs~p~~p~  147 (450)
T PRK06116         84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVDA---H---TVEV-NGERYTADHILIATGGRPSIPD  147 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC---C---EEEE-CCEEEEeCEEEEecCCCCCCCC
Confidence                      011223445677899999874 444432   1   3444 6778999999999999987543

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.24  E-value=4.2e-06  Score=86.37  Aligned_cols=93  Identities=22%  Similarity=0.290  Sum_probs=69.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc---c----c-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---Q----R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~---~----~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+.   .    . .++.++.....+.+++.||++++++.+..   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence            46799999999999999999999999999999764331   1    0 13455666666778899999999875411   


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCC-CCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~  172 (352)
                             .+.+++.....+|.||+|+|. .|.
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa~~~~  531 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGAGLPN  531 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence                   233444445679999999998 465

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.23  E-value=1.8e-05  Score=75.24  Aligned_cols=100  Identities=29%  Similarity=0.354  Sum_probs=76.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC-cccc----------------------------------------c
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQ----------------------------------------R  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~-~~~~----------------------------------------~  109 (352)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++.+ .+.+                                        .
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            3579999999999999999999999999999861 1100                                        0


Q ss_pred             -------------------ccCHHHHHHHHHHHHhCC-cEEEcCCeEEEEEecCCCcEEEEEcC-CCCEEEcCEEEEccC
Q 018652          110 -------------------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIG  168 (352)
Q Consensus       110 -------------------~~~~~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G  168 (352)
                                         ..-..+.+.+.+.+.+.+ |+++.++.|+.++.++ +.+. +++. +|+++.||++|-|-|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654          82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCC
Confidence                               001234566667777666 9999999999998654 3333 6677 999999999999999


Q ss_pred             CCCC
Q 018652          169 AKPT  172 (352)
Q Consensus       169 ~~p~  172 (352)
                      ....
T Consensus       160 ~~S~  163 (387)
T COG0654         160 ANSA  163 (387)
T ss_pred             CchH
Confidence            7653

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.23  E-value=2.2e-05  Score=75.74  Aligned_cols=107  Identities=23%  Similarity=0.381  Sum_probs=76.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------------------------ccc-------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------RLF-------------  111 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------------------------~~~-------------  111 (352)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+..                           +..             
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            5799999999999999999999999999997632100                           000             


Q ss_pred             ---------------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          112 ---------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       112 ---------------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                                           -..+.+++.+..++.|++++.++.|+++... ++.+..+. .+|.++.+|.||.|+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN  163 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence                                 0011234556667789999999999998754 44444444 466789999999999985


Q ss_pred             CCchhhhhcCCc
Q 018652          171 PTVSPFERVGLN  182 (352)
Q Consensus       171 p~~~~~~~~gl~  182 (352)
                      .  .+.+.+++.
T Consensus       164 s--~l~~~lgl~  173 (428)
T PRK10157        164 S--ILAEKLGMA  173 (428)
T ss_pred             H--HHHHHcCCC
Confidence            3  445555543

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.22  E-value=1.8e-05  Score=75.03  Aligned_cols=68  Identities=21%  Similarity=0.346  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCE-EEcCEEEEccCCCCCchhhhhcCCcc
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSPFERVGLNS  183 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~~gl~~  183 (352)
                      ++...+.+.+.++|++++++++|+.|++.+++ +..+.+.+|++ ++|+.||.|.|.... .+++.+|++.
T Consensus       154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~  222 (429)
T COG0579         154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPE  222 (429)
T ss_pred             HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH-HHHHHhCCCc
Confidence            34556666778889999999999999987665 55778888876 999999999998775 5677777665

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.21  E-value=4.5e-06  Score=81.29  Aligned_cols=92  Identities=17%  Similarity=0.324  Sum_probs=69.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------c-cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~-~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||+|++|+.+|..|+++|.+|+++++.+.+.       + ..++.++.....+.+++.|++++.++.+..-  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            46789999999999999999999999999999876542       1 1135566666778889999999999865221  


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                              +.+++ ....+|.||+|+|..+.
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence                    11111 12479999999999874

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05868 hypothetical protein; Validated

Probab=98.20  E-value=1.8e-05  Score=74.88  Aligned_cols=100  Identities=22%  Similarity=0.218  Sum_probs=71.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------------------------  108 (352)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            4799999999999999999999999999997632100                                           


Q ss_pred             --cccC-H----H--------HHHHHHHHHH---hCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          109 --RLFT-P----S--------LAQRYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       109 --~~~~-~----~--------~~~~l~~~l~---~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                        .... .    .        ....+.+.|.   ..|+++++++++++++.+ ++. ..+.+++|+++++|+||-|-|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~-v~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDS-VRVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCe-EEEEECCCCeEEeCEEEECCCCC
Confidence              0000 0    0        0112233332   358999999999999754 333 36788999999999999999987


Q ss_pred             CCc
Q 018652          171 PTV  173 (352)
Q Consensus       171 p~~  173 (352)
                      ...
T Consensus       160 S~v  162 (372)
T PRK05868        160 SNV  162 (372)
T ss_pred             chH
Confidence            643

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.19  E-value=6.1e-06  Score=80.73  Aligned_cols=92  Identities=25%  Similarity=0.335  Sum_probs=68.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------cc-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++++|||+|+.|+++|..|++.|.+|+++++.+++.       +. .+++++.....+.+++.||++++++.+.. + 
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~-  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D-  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence            35799999999999999999999999999999877542       11 13456666666778999999999987631 0 


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCC-CC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~  172 (352)
                              +.. ++....+|.|++|+|.. |.
T Consensus       220 --------~~~-~~~~~~~d~VilAtGa~~~~  242 (485)
T TIGR01317       220 --------ISA-DELKEQFDAVVLAGGATKPR  242 (485)
T ss_pred             --------cCH-HHHHhhCCEEEEccCCCCCC
Confidence                    100 11235799999999997 44

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.19  E-value=2e-05  Score=76.39  Aligned_cols=58  Identities=31%  Similarity=0.579  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      .+.+.|.+...+.||+++.++ |+.+...+++.+..|++++|+++++|++|=|+|++..
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            455677777888999999885 7777767788888999999999999999999998753

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.18  E-value=1.7e-05  Score=77.43  Aligned_cols=100  Identities=22%  Similarity=0.316  Sum_probs=68.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc--------------------------c-------CHH---
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------------------F-------TPS---  114 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~--------------------------~-------~~~---  114 (352)
                      ..+++|||+|+.|+.+|..++++|.+|+++++.. +-..+                          +       ..+   
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   82 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK   82 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            4579999999999999999999999999999752 10000                          0       001   


Q ss_pred             -----------HHHHHHHHHHhCCcEEEcCCeEEEEEec---CCCcEEEEEcCCC--CEEEcCEEEEccCCCCC
Q 018652          115 -----------LAQRYEQLYQQNGVKFVKGASIKNLEAG---SDGRVAAVKLEDG--STIDADTIVIGIGAKPT  172 (352)
Q Consensus       115 -----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~---~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~  172 (352)
                                 +.....+.+++.||+++.+. ++.++..   ++.....|.+.+|  +++.+|.+|+|||.+|.
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~  155 (472)
T PRK05976         83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV  155 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence                       11223345677899999874 4555422   1112345666777  47999999999999986

>PRK06184 hypothetical protein; Provisional

Probab=98.18  E-value=2.6e-05  Score=76.88  Aligned_cols=99  Identities=16%  Similarity=0.230  Sum_probs=73.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------------c--
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R--  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------------------------~--  109 (352)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..                                        .  
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            5699999999999999999999999999997622100                                        0  


Q ss_pred             ---------------------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCCEEEcCEEE
Q 018652          110 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV  164 (352)
Q Consensus       110 ---------------------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi  164 (352)
                                           .++ ..+.+.+.+.+.+.|++++.++++++++.++++.  .+.+   .+++++.+|.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeCCCeEEEEeCEEE
Confidence                                 000 1223456667778899999999999998654443  3334   556789999999


Q ss_pred             EccCCCCC
Q 018652          165 IGIGAKPT  172 (352)
Q Consensus       165 ~a~G~~p~  172 (352)
                      .|.|....
T Consensus       162 gADG~~S~  169 (502)
T PRK06184        162 GADGGRSF  169 (502)
T ss_pred             ECCCCchH
Confidence            99998763

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.17  E-value=8e-06  Score=85.19  Aligned_cols=90  Identities=20%  Similarity=0.209  Sum_probs=65.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  142 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~  142 (352)
                      +++|+|||||+.|+.+|..|++.|.+|+|+++.+.+...        .++.+......+.+.+.||+++++...      
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~------  610 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP------  610 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc------
Confidence            578999999999999999999999999999987643211        123444555556778889999987421      


Q ss_pred             CCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          143 SDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       143 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                            .+.+.+.+...+|.||+|+|..+.
T Consensus       611 ------d~~ve~l~~~gYDaVIIATGA~~~  634 (1012)
T TIGR03315       611 ------DLTVAELKNQGYKYVILAIGAWKH  634 (1012)
T ss_pred             ------ceEhhhhhcccccEEEECCCCCCC
Confidence                  112233344679999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK09126 hypothetical protein; Provisional

Probab=98.17  E-value=2.4e-05  Score=74.47  Aligned_cols=100  Identities=23%  Similarity=0.343  Sum_probs=72.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------c------------------------c-----------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q------------------------R-----------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~------------------------~-----------  109 (352)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.+-       .                        .           
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            469999999999999999999999999999764210       0                        0           


Q ss_pred             --------ccC---------------HHHHHHHHHHH-HhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652          110 --------LFT---------------PSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  165 (352)
Q Consensus       110 --------~~~---------------~~~~~~l~~~l-~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  165 (352)
                              .++               ..+.+.+.+.+ +..|++++.++++++++..++ . ..|.+++|+++.+|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~-~~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-G-AQVTLANGRRLTARLLVA  161 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-e-EEEEEcCCCEEEeCEEEE
Confidence                    000               00112222222 346899999999999975433 3 357778899999999999


Q ss_pred             ccCCCCCc
Q 018652          166 GIGAKPTV  173 (352)
Q Consensus       166 a~G~~p~~  173 (352)
                      |.|..+..
T Consensus       162 AdG~~S~v  169 (392)
T PRK09126        162 ADSRFSAT  169 (392)
T ss_pred             eCCCCchh
Confidence            99987753

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.16  E-value=2.4e-05  Score=74.87  Aligned_cols=99  Identities=19%  Similarity=0.339  Sum_probs=73.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc----------c--------------c------cc-----c------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------L--------------L------QR-----L------  110 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~----------~--------------~------~~-----~------  110 (352)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.          .              +      ..     .      
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            4699999999999999999999999999997541          0              0      00     0      


Q ss_pred             ------------cC---------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEE
Q 018652          111 ------------FT---------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  163 (352)
Q Consensus       111 ------------~~---------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v  163 (352)
                                  ++               ..+.+.+.+.+++.|++++.++++.+++..+++  ..|.+.+|+++.+|+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v  160 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV  160 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                        00               011223445556678999999999999865443  3577888989999999


Q ss_pred             EEccCCCCC
Q 018652          164 VIGIGAKPT  172 (352)
Q Consensus       164 i~a~G~~p~  172 (352)
                      |.|.|....
T Consensus       161 VgAdG~~S~  169 (405)
T PRK05714        161 VAADGANSA  169 (405)
T ss_pred             EEecCCCch
Confidence            999998664

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.16  E-value=9.2e-06  Score=79.55  Aligned_cols=82  Identities=20%  Similarity=0.251  Sum_probs=65.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+++++|+|+|.+|+++|..|+++|.+|+++++.+.        .....+.+.+++.||+++++..+.            
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence            578999999999999999999999999999986642        223345666888999998875332            


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                            ....+|+||+++|..|+.+++.
T Consensus        75 ------~~~~~D~Vv~s~Gi~~~~~~~~   96 (480)
T PRK01438         75 ------LPEDTDLVVTSPGWRPDAPLLA   96 (480)
T ss_pred             ------ccCCCCEEEECCCcCCCCHHHH
Confidence                  1246899999999999988743

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.16  E-value=1.7e-05  Score=73.92  Aligned_cols=100  Identities=29%  Similarity=0.378  Sum_probs=71.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-----------------------------------------c---
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------------------------------Q---  108 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-----------------------------------------~---  108 (352)
                      +|+|||||+.|+-+|..|++.|.+|+|+++.+.+.                                         .   
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            68999999999999999999999999999872110                                         0   


Q ss_pred             -----------cc------------c-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCC--EEEcC
Q 018652          109 -----------RL------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD  161 (352)
Q Consensus       109 -----------~~------------~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D  161 (352)
                                 ..            + -..+.+.+.+.+++.|++++.++++..++.+.++....+... +|+  ++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                       00            0 124566777788888999999999999886654432233333 343  68999


Q ss_pred             EEEEccCCCCC
Q 018652          162 TIVIGIGAKPT  172 (352)
Q Consensus       162 ~vi~a~G~~p~  172 (352)
                      +||-|-|....
T Consensus       163 lvVgADG~~S~  173 (356)
T PF01494_consen  163 LVVGADGAHSK  173 (356)
T ss_dssp             EEEE-SGTT-H
T ss_pred             eeecccCcccc
Confidence            99999998864

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.16  E-value=2.6e-05  Score=73.90  Aligned_cols=97  Identities=21%  Similarity=0.328  Sum_probs=71.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEecCCccccc--------cc--------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR--------LF--------------------------------  111 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~~--------~~--------------------------------  111 (352)
                      .|+|||||+.|+-+|..|++.| .+|+++++.+.+...        .+                                
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            4899999999999999999999 999999876321000        00                                


Q ss_pred             -----------------------CHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652          112 -----------------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  167 (352)
Q Consensus       112 -----------------------~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  167 (352)
                                             ...+.+.+.+.+.+ .|++++.+++++++...+++  ..+.+++|+++.+|.||.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence                                   01123344455555 49999999999999755433  35677888889999999999


Q ss_pred             CCCC
Q 018652          168 GAKP  171 (352)
Q Consensus       168 G~~p  171 (352)
                      |...
T Consensus       159 G~~S  162 (382)
T TIGR01984       159 GANS  162 (382)
T ss_pred             CCCh
Confidence            9764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.16  E-value=2.9e-05  Score=74.48  Aligned_cols=101  Identities=24%  Similarity=0.355  Sum_probs=70.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc----cc-------------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR-------------------------------------  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~----~~-------------------------------------  109 (352)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+-    .+                                     
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            4579999999999999999999999999999763210    00                                     


Q ss_pred             -----cc---------------CHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCC--C-CEEEcCEEEE
Q 018652          110 -----LF---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED--G-STIDADTIVI  165 (352)
Q Consensus       110 -----~~---------------~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~--g-~~i~~D~vi~  165 (352)
                           .+               ...+.+.+.+.+.+. ++++++++++++++.++++.  .+.+.+  + .++.+|+||.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~--~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAA--TVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCee--EEEEccCCcceEEeeeEEEE
Confidence                 00               011223333434443 79999999999997554332  455543  2 3699999999


Q ss_pred             ccCCCCCc
Q 018652          166 GIGAKPTV  173 (352)
Q Consensus       166 a~G~~p~~  173 (352)
                      |.|.....
T Consensus       176 ADG~~S~v  183 (415)
T PRK07364        176 ADGARSPI  183 (415)
T ss_pred             eCCCCchh
Confidence            99987653

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.16  E-value=2.9e-05  Score=73.55  Aligned_cols=98  Identities=27%  Similarity=0.342  Sum_probs=72.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------c--cc--------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R--LF--------------------------------  111 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------~--~~--------------------------------  111 (352)
                      .|+|||+|+.|+-+|..|++.|.+|+|+++.+.+-.       +  .+                                
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            489999999999999999999999999998742100       0  00                                


Q ss_pred             ------------------------CHHHHHHHHHHHHhCC-cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEc
Q 018652          112 ------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  166 (352)
Q Consensus       112 ------------------------~~~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  166 (352)
                                              ...+.+.+.+.+.+.| ++++.++++++++..+ +.+ .+.+++|+++.+|.||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DHV-ELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Cee-EEEECCCCEEEeeEEEEe
Confidence                                    0112233444556666 9999999999997643 333 577889989999999999


Q ss_pred             cCCCCC
Q 018652          167 IGAKPT  172 (352)
Q Consensus       167 ~G~~p~  172 (352)
                      .|....
T Consensus       159 dG~~S~  164 (385)
T TIGR01988       159 DGANSK  164 (385)
T ss_pred             CCCCCH
Confidence            998654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.14  E-value=2.6e-05  Score=75.56  Aligned_cols=98  Identities=16%  Similarity=0.242  Sum_probs=65.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-cc-----ccCH-----------HHH----------HHH----H
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QR-----LFTP-----------SLA----------QRY----E  120 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-~~-----~~~~-----------~~~----------~~l----~  120 (352)
                      ..++|||||+.|+.+|..|+++|.+|+++++.+..+ ..     +.+.           ++.          +.+    .
T Consensus         4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (441)
T PRK08010          4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNF   83 (441)
T ss_pred             CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Confidence            479999999999999999999999999999864311 00     0110           010          111    1


Q ss_pred             HHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCCCCCch
Q 018652          121 QLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       121 ~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~  174 (352)
                      +.+.+ .|++++.+ .+..++.   + ...|.+.+|+ ++.+|.+|+|||.+|...
T Consensus        84 ~~~~~~~gv~~~~g-~~~~i~~---~-~~~v~~~~g~~~~~~d~lviATGs~p~~p  134 (441)
T PRK08010         84 HNLADMPNIDVIDG-QAEFINN---H-SLRVHRPEGNLEIHGEKIFINTGAQTVVP  134 (441)
T ss_pred             HHHhhcCCcEEEEE-EEEEecC---C-EEEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence            22333 38998876 3445532   2 2355666775 699999999999998644

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.14  E-value=3.1e-05  Score=73.59  Aligned_cols=98  Identities=28%  Similarity=0.363  Sum_probs=73.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------------------cc-c------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------RL-F------------------  111 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------------------~~-~------------------  111 (352)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.+..                     .. +                  
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            4799999999999999999999999999997643210                     00 0                  


Q ss_pred             ------------------------CHHHHHHHHHHHHhCC-cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEc
Q 018652          112 ------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  166 (352)
Q Consensus       112 ------------------------~~~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  166 (352)
                                              ...+.+.+.+.+++.| ++++ +++++++...++ . ..+.+.+|+++.+|.+|.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~-~~v~~~~g~~~~a~~vI~a  162 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD-A-ATLTLADGQVLRADLVVGA  162 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC-e-EEEEECCCCEEEeeEEEEe
Confidence                                    1123344555567776 9998 889999875433 3 3577888888999999999


Q ss_pred             cCCCCC
Q 018652          167 IGAKPT  172 (352)
Q Consensus       167 ~G~~p~  172 (352)
                      .|....
T Consensus       163 dG~~S~  168 (388)
T PRK07608        163 DGAHSW  168 (388)
T ss_pred             CCCCch
Confidence            998754

>PRK08013 oxidoreductase; Provisional

Probab=98.14  E-value=2.8e-05  Score=74.29  Aligned_cols=99  Identities=25%  Similarity=0.341  Sum_probs=72.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------c--------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------R--------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------------~--------------  109 (352)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                            .              
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            4799999999999999999999999999997632100                            0              


Q ss_pred             --------c-cC---------------HHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652          110 --------L-FT---------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  164 (352)
Q Consensus       110 --------~-~~---------------~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  164 (352)
                              . +.               ..+.+.+.+.+.+. |++++.++++++++.++++  ..+.+.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV  161 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV  161 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence                    0 00               01122333444443 7999999999999765443  35677899999999999


Q ss_pred             EccCCCCC
Q 018652          165 IGIGAKPT  172 (352)
Q Consensus       165 ~a~G~~p~  172 (352)
                      -|-|....
T Consensus       162 gADG~~S~  169 (400)
T PRK08013        162 GADGANSW  169 (400)
T ss_pred             EeCCCCcH
Confidence            99998764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.13  E-value=2.6e-05  Score=75.98  Aligned_cols=98  Identities=23%  Similarity=0.336  Sum_probs=67.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----ccCH-------------------------------H-
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTP-------------------------------S-  114 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~~~~-------------------------------~-  114 (352)
                      ..++|||+|+.|+.+|..|++.|.+|+++++.+.+...     ..+.                               . 
T Consensus         6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (461)
T PRK05249          6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL   85 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence            57999999999999999999999999999986432110     0110                               0 


Q ss_pred             ----------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCch
Q 018652          115 ----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       115 ----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~  174 (352)
                                ..+.+.+.+++.||+++.+. +..++   .. ...+...+|+  ++.+|.+|+|||.+|..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~-~~~v~~~~g~~~~~~~d~lviATGs~p~~p  152 (461)
T PRK05249         86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD---PH-TVEVECPDGEVETLTADKIVIATGSRPYRP  152 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec---CC-EEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence                      11223445677899998774 33333   12 2345556664  699999999999998643

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.13  E-value=8.7e-06  Score=86.00  Aligned_cols=93  Identities=25%  Similarity=0.299  Sum_probs=68.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||+|+.|+.+|..|+++|.+|+|+++.+.+...        .++.++.....+.+++.||++++++.+.    
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg----  504 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG----  504 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC----
Confidence            4579999999999999999999999999999987644211        1356677777788999999999986431    


Q ss_pred             cCCCcEEEEEcCCCC-EEEcCEEEEccCCC-CC
Q 018652          142 GSDGRVAAVKLEDGS-TIDADTIVIGIGAK-PT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~-p~  172 (352)
                       .     .+.+.+-. ...+|.||+|+|.. |.
T Consensus       505 -~-----~~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        505 -K-----TFTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             -C-----ccCHHHHhhccCCCEEEEecCCCCCC
Confidence             0     11221111 24689999999984 54

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.13  E-value=4e-05  Score=75.53  Aligned_cols=138  Identities=21%  Similarity=0.266  Sum_probs=83.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------cc----
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------RL----  110 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------~~----  110 (352)
                      .|+|+|||+|.+|+-.|..|.+.|.+++++++++.+..                                    ..    
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f   80 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF   80 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence            37999999999999999999999999999998743210                                    00    


Q ss_pred             -cCHHHHHHHHHHHHhCCc--EEEcCCeEEEEEecCCC---cEEEEEcC-CCC--EEEcCEEEEccCCC--CCchhhhhc
Q 018652          111 -FTPSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDG---RVAAVKLE-DGS--TIDADTIVIGIGAK--PTVSPFERV  179 (352)
Q Consensus       111 -~~~~~~~~l~~~l~~~gV--~~~~~~~v~~i~~~~~~---~~~~v~~~-~g~--~i~~D~vi~a~G~~--p~~~~~~~~  179 (352)
                       -..++.++++...+..++  .+.++++|.++++.++.   ....|++. +|+  +..+|.|++|+|.-  |+.+.-.--
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~  160 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP  160 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence             014677888888887776  57899999999875442   22345554 343  35699999999974  554320011


Q ss_pred             CCcccCCcEEeCCCCCC----CCCCEEEecccc
Q 018652          180 GLNSSVGGIQVDGQFRT----RMPGIFAIGDVA  208 (352)
Q Consensus       180 gl~~~~g~i~vd~~~~t----~~~~Iya~GD~a  208 (352)
                      |++.=+|.+.=...++.    ..++|-.+|-..
T Consensus       161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~  193 (531)
T PF00743_consen  161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGN  193 (531)
T ss_dssp             TGGGHCSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred             hhhcCCeeEEccccCcChhhcCCCEEEEEeCCH
Confidence            33221344432233332    245687877543

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK09897 hypothetical protein; Provisional

Probab=98.13  E-value=0.00025  Score=69.86  Aligned_cols=83  Identities=19%  Similarity=0.146  Sum_probs=54.2

Q ss_pred             cCCceEEEECCCc--EEEeCC-CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            3 YQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         3 ~~~~V~~id~~~~--~V~~~~-g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      .+++|++|+..+.  .|++++ +..+.+|+||+|||..+...+  .+  .+  .++.+..+.. ..... .+.+|+|+|.
T Consensus       128 ~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p~~~--~~--~~--~yi~~pw~~~-~~~~i-~~~~V~I~Gt  199 (534)
T PRK09897        128 ESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEE--EA--TR--TYFPSPWSGL-MEAKV-DACNVGIMGT  199 (534)
T ss_pred             ECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCCCCC--hh--hc--cccCCCCcch-hhcCC-CCCeEEEECC
Confidence            4678999987654  455544 467999999999997642211  11  11  1222223221 12223 3789999999


Q ss_pred             ChHHHHHHHHHHhC
Q 018652           80 GYIGMEVAAAAVGW   93 (352)
Q Consensus        80 G~~g~e~A~~l~~~   93 (352)
                      |.++++++..|...
T Consensus       200 GLt~iD~v~~Lt~~  213 (534)
T PRK09897        200 SLSGLDAAMAVAIQ  213 (534)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998765

>PRK07190 hypothetical protein; Provisional

Probab=98.11  E-value=4.2e-05  Score=74.90  Aligned_cols=98  Identities=19%  Similarity=0.337  Sum_probs=73.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc----------------------------------------ccc-
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QRL-  110 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~----------------------------------------~~~-  110 (352)
                      ..|+|||+|++|+-+|..|++.|.+|.++++.+.+.                                        ... 
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            479999999999999999999999999999763210                                        000 


Q ss_pred             ---------c-----------C-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          111 ---------F-----------T-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       111 ---------~-----------~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                               +           + ..+...+.+.+++.|++++.++++++++.++++.  .+.+.+|+++.|+.||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCC
Confidence                     0           0 0122345556678899999999999998654442  345577888999999999998


Q ss_pred             CC
Q 018652          170 KP  171 (352)
Q Consensus       170 ~p  171 (352)
                      +.
T Consensus       164 ~S  165 (487)
T PRK07190        164 RS  165 (487)
T ss_pred             CH
Confidence            65

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.11  E-value=3.1e-05  Score=74.98  Aligned_cols=98  Identities=18%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc------ccC--------------HHH-----------HHHHH
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFT--------------PSL-----------AQRYE  120 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~------~~~--------------~~~-----------~~~l~  120 (352)
                      ..++|||+|+.|+.+|..++++|.+|+++++++.++..      +.+              +.+           .....
T Consensus         4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (438)
T PRK07251          4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNY   83 (438)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999987532110      011              011           11122


Q ss_pred             HHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-CCEEEcCEEEEccCCCCCch
Q 018652          121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       121 ~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~~~  174 (352)
                      +.+.+.||+++.+.. ..++   +.. ..+...+ ..++.+|.||+|||.+|+..
T Consensus        84 ~~~~~~gV~~~~g~~-~~~~---~~~-v~v~~~~~~~~~~~d~vViATGs~~~~p  133 (438)
T PRK07251         84 AMLAGSGVDLYDAEA-HFVS---NKV-IEVQAGDEKIELTAETIVINTGAVSNVL  133 (438)
T ss_pred             HHHHhCCCEEEEEEE-EEcc---CCE-EEEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence            456778899987652 2221   222 2233222 24699999999999998744

>PLN02697 lycopene epsilon cyclase

Probab=98.10  E-value=4.1e-05  Score=75.30  Aligned_cols=98  Identities=23%  Similarity=0.373  Sum_probs=71.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~------------------------------------------  109 (352)
                      ..|+|||+|+.|+.+|..|++.|.+|.++++...+...                                          
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            47999999999999999999999999999864211000                                          


Q ss_pred             ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          110 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       110 ~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      .....+.+.+.+.+.+.|+++ .++.|+++...+++ ...+.+.+|.++.++.||.|+|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence            000122344555667789998 56789998754333 3334567888999999999999876

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.10  E-value=7.2e-05  Score=63.63  Aligned_cols=165  Identities=21%  Similarity=0.271  Sum_probs=98.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------cc---------------------------cC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------RL---------------------------FT  112 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------~~---------------------------~~  112 (352)
                      ....|+|+|+|++|+.+|.+|++.|.+|.+++++..+-.          ..                           -+
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds  108 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADS  108 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecH
Confidence            356799999999999999999999999999998833211          00                           01


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-----------CCCEEEcCEEEEccCCCCCch-hh-hhc
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ERV  179 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-~~-~~~  179 (352)
                      ..+...+....-+.|.++..+..+..+--.++.++..+...           |--.+++++||-+||.....- ++ +..
T Consensus       109 ~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~  188 (262)
T COG1635         109 AEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRI  188 (262)
T ss_pred             HHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhc
Confidence            22233333444567889998888888754333355555442           234789999999999987532 22 111


Q ss_pred             ---CCccc-CCc--------EEeCCCCCCCCCCEEEecccccc--CCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          180 ---GLNSS-VGG--------IQVDGQFRTRMPGIFAIGDVAAF--PLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       180 ---gl~~~-~g~--------i~vd~~~~t~~~~Iya~GD~a~~--~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                         +.+.. .+.        ..|+.+. --.||+|++|=.+.-  ..+..|.     .+..-...|+.+|+.++.
T Consensus       189 ~~l~~~~~Ge~~mw~e~~E~lvV~~T~-eV~pgL~vaGMa~~av~G~pRMGP-----iFGgMllSGkkaAe~i~e  257 (262)
T COG1635         189 PELGIEVPGEKSMWAERGEDLVVENTG-EVYPGLYVAGMAVNAVHGLPRMGP-----IFGGMLLSGKKAAEEILE  257 (262)
T ss_pred             cccccccCCCcchhhhHHHHHHHhccc-cccCCeEeehhhHHhhcCCcccCc-----hhhhhhhchHHHHHHHHH
Confidence               22211 011        1122211 247999999977652  2222222     222223567778777663

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.10  E-value=3.8e-05  Score=75.04  Aligned_cols=97  Identities=26%  Similarity=0.316  Sum_probs=65.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-----cCH-------------------------------H
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTP-------------------------------S  114 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----~~~-------------------------------~  114 (352)
                      ...++|||+|+.|+.+|..++++|.+|+++++.+.+-..+     .+.                               .
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   83 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDK   83 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence            3579999999999999999999999999999764331100     100                               1


Q ss_pred             HH-----------HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCC
Q 018652          115 LA-----------QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPT  172 (352)
Q Consensus       115 ~~-----------~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~  172 (352)
                      +.           ..+...+++.||+++.+. ...++    .+...|...+|  +++.+|.+|+|||.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~----~~~v~v~~~~g~~~~~~~d~lViATGs~p~  149 (471)
T PRK06467         84 MRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTG----GNTLEVTGEDGKTTVIEFDNAIIAAGSRPI  149 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc----CCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence            10           112234567799999764 22222    22234555566  47999999999999985

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.09  E-value=4.3e-05  Score=72.59  Aligned_cols=101  Identities=23%  Similarity=0.318  Sum_probs=71.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc--cc---c---c--ccCH----------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--LL---Q---R--LFTP----------------------------  113 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~--~~---~---~--~~~~----------------------------  113 (352)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.  ..   +   +  .+.+                            
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            4799999999999999999999999999996531  00   0   0  0000                            


Q ss_pred             ---------------------------HHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652          114 ---------------------------SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  165 (352)
Q Consensus       114 ---------------------------~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  165 (352)
                                                 .+...+.+.+.+ .|++++.++++++++.++++  ..+.+++|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg  161 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG  161 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence                                       000112222233 36999999999999865443  357888999999999999


Q ss_pred             ccCCCCCch
Q 018652          166 GIGAKPTVS  174 (352)
Q Consensus       166 a~G~~p~~~  174 (352)
                      |.|......
T Consensus       162 ADG~~S~vR  170 (384)
T PRK08849        162 ADGANSQVR  170 (384)
T ss_pred             ecCCCchhH
Confidence            999987643

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.09  E-value=4.6e-05  Score=72.55  Aligned_cols=100  Identities=23%  Similarity=0.346  Sum_probs=73.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc--------------------------------cc-------c--
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------LQ-------R--  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~--------------------------------~~-------~--  109 (352)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+..                                ..       +  
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            357999999999999999999999999999875310                                00       0  


Q ss_pred             ---c------c---------------CHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652          110 ---L------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  164 (352)
Q Consensus       110 ---~------~---------------~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  164 (352)
                         .      +               ...+.+.+.+.+.+. |++++.+++++++...+++  ..+.+++|+++.+|.||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI  162 (391)
T PRK08020         85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI  162 (391)
T ss_pred             EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence               0      0               011223344445555 9999999999999754332  35777888899999999


Q ss_pred             EccCCCCC
Q 018652          165 IGIGAKPT  172 (352)
Q Consensus       165 ~a~G~~p~  172 (352)
                      .|.|....
T Consensus       163 ~AdG~~S~  170 (391)
T PRK08020        163 GADGANSQ  170 (391)
T ss_pred             EeCCCCch
Confidence            99998775

>PRK06753 hypothetical protein; Provisional

Probab=98.08  E-value=3.3e-05  Score=73.01  Aligned_cols=99  Identities=14%  Similarity=0.224  Sum_probs=69.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----ccCHHH---------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LFTPSL---------------------------------  115 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----~~~~~~---------------------------------  115 (352)
                      +|+|||||+.|+-+|..|++.|.+|+|+++.+.+...    .+.+..                                 
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            6999999999999999999999999999977432100    000000                                 


Q ss_pred             ---------------HHHHHHHHHhC--CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          116 ---------------AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       116 ---------------~~~l~~~l~~~--gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                                     ...+.+.|.+.  +.++++++++++++.+ ++. ..+.+++|+++.+|+||.|.|....+
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDK-VTIHFADGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCc-EEEEECCCCEEecCEEEECCCcchHH
Confidence                           01223333322  4578899999999854 333 35778899999999999999977643

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.08  E-value=1.1e-05  Score=81.72  Aligned_cols=92  Identities=17%  Similarity=0.319  Sum_probs=69.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------ccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.        +..+++.+.....+.+++.||++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            47899999999999999999999999999999887542        1124566666667788999999999986521   


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                             .+.+.+ ....+|.|++++|..+.
T Consensus       386 -------~~~~~~-l~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 -------DITFSD-LTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             -------cCCHHH-HHhcCCEEEEeCCCCCC
Confidence                   112222 13468999999998653

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.07  E-value=4.5e-05  Score=73.01  Aligned_cols=100  Identities=24%  Similarity=0.364  Sum_probs=71.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC-Ccc--------------------c------ccc-------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL--------------------L------QRL-------------  110 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~--------------------~------~~~-------------  110 (352)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++. +..                    +      ...             
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            357999999999999999999999999999974 100                    0      000             


Q ss_pred             ----------cC---------------HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652          111 ----------FT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  164 (352)
Q Consensus       111 ----------~~---------------~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  164 (352)
                                ++               ..+...+.+.+.+ .|++++.++++++++.++++  ..+.+++|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI  161 (405)
T PRK08850         84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV  161 (405)
T ss_pred             EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence                      00               0112233333444 37999999999999754333  36778899999999999


Q ss_pred             EccCCCCC
Q 018652          165 IGIGAKPT  172 (352)
Q Consensus       165 ~a~G~~p~  172 (352)
                      .|.|....
T Consensus       162 gADG~~S~  169 (405)
T PRK08850        162 GADGANSW  169 (405)
T ss_pred             EeCCCCCh
Confidence            99997654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.07  E-value=1.4e-05  Score=78.14  Aligned_cols=91  Identities=20%  Similarity=0.314  Sum_probs=67.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...        .++.++.....+.+.+.||++++++.+.. + 
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-  219 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D-  219 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence            3579999999999999999999999999999987654211        13445556666778999999999876521 1 


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                              +.. +.....+|.||+|+|..+
T Consensus       220 --------~~~-~~~~~~~d~vvlAtGa~~  240 (471)
T PRK12810        220 --------ITA-EELLAEYDAVFLGTGAYK  240 (471)
T ss_pred             --------CCH-HHHHhhCCEEEEecCCCC
Confidence                    000 111357999999999973

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.06  E-value=6e-05  Score=75.11  Aligned_cols=103  Identities=21%  Similarity=0.307  Sum_probs=73.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------cc------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------RL------  110 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------------------~~------  110 (352)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                  ..      
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            45799999999999999999999999999997732100                                  00      


Q ss_pred             -------------------c-CHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccC
Q 018652          111 -------------------F-TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIG  168 (352)
Q Consensus       111 -------------------~-~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G  168 (352)
                                         + ...+.+.+.+.+.+. ++++++++++++++.++++....++..+|+ ++.+|.||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                               0 011223445555554 799999999999986544433334445564 699999999999


Q ss_pred             CCCCc
Q 018652          169 AKPTV  173 (352)
Q Consensus       169 ~~p~~  173 (352)
                      .....
T Consensus       183 ~~S~v  187 (547)
T PRK08132        183 ARSPL  187 (547)
T ss_pred             CCcHH
Confidence            87653

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.06  E-value=5.6e-05  Score=75.11  Aligned_cols=101  Identities=25%  Similarity=0.332  Sum_probs=72.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------  108 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------  108 (352)
                      ..+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..                                          
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            46799999999999999999999999999997732100                                          


Q ss_pred             ---cc---------c-------CHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcC--CC--CEEEcCEEE
Q 018652          109 ---RL---------F-------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIV  164 (352)
Q Consensus       109 ---~~---------~-------~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~--~g--~~i~~D~vi  164 (352)
                         ..         +       -+.+.+.+.+.+.+. |++++.++++++++.++++.  .+.++  +|  +++.+|+||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence               00         0       012223444555553 89999999999998665543  34443  56  479999999


Q ss_pred             EccCCCCCc
Q 018652          165 IGIGAKPTV  173 (352)
Q Consensus       165 ~a~G~~p~~  173 (352)
                      -|.|.....
T Consensus       168 gADG~~S~v  176 (538)
T PRK06183        168 GCDGANSFV  176 (538)
T ss_pred             ecCCCchhH
Confidence            999987643

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.06  E-value=5.6e-05  Score=71.85  Aligned_cols=97  Identities=22%  Similarity=0.289  Sum_probs=70.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------c------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------R------------------  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------~------------------  109 (352)
                      .|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                         .                  
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            489999999999999999999999999997642210                         0                  


Q ss_pred             -ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          110 -LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       110 -~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                       .-...+.+.+.+.+.+.|++++ ...+..+... ++....+.+.+|+++.++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence             0001233445555677789886 4578888654 2333467778888899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.03  E-value=7.3e-05  Score=71.27  Aligned_cols=59  Identities=24%  Similarity=0.336  Sum_probs=42.1

Q ss_pred             HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCC
Q 018652          119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  181 (352)
Q Consensus       119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl  181 (352)
                      +.+.+++.|++++.++.+.+++..+ +.+ .|.+.+| ++.+|.||+|+|.... .+++.+++
T Consensus       155 L~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~  213 (393)
T PRK11728        155 MAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL  213 (393)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence            3444567899999999999987543 333 5666666 6999999999998754 44444443

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.03  E-value=4.9e-05  Score=75.22  Aligned_cols=96  Identities=24%  Similarity=0.368  Sum_probs=69.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC-cccc-------------------ccc--------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQ-------------------RLF--------------------  111 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~-~~~~-------------------~~~--------------------  111 (352)
                      -.|+|||||..|+++|..+++.|.+|.++++.. .+..                   ..+                    
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~   84 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT   84 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence            469999999999999999999999999998762 1100                   000                    


Q ss_pred             -------------CH-HHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          112 -------------TP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       112 -------------~~-~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                                   +. .+...+.+.+++. |++++ ...+.++..+ ++.+..|.+.+|..+.|+.||+|+|.
T Consensus        85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCc
Confidence                         00 1123344445544 78886 4567777643 56777889999999999999999994

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.01  E-value=6.9e-05  Score=70.94  Aligned_cols=98  Identities=19%  Similarity=0.289  Sum_probs=70.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC----cc----------------cc-----------------------c
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----------------LQ-----------------------R  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~----~~----------------~~-----------------------~  109 (352)
                      +|+|||||+.|+-+|..|++.|.+|+|+++.+    .+                +.                       .
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            58999999999999999999999999999641    10                00                       0


Q ss_pred             ------------------ccCHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          110 ------------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       110 ------------------~~~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                                        ..-+.+.+.+.+.+.+. +++++.+++++++...+++  ..+.+.++ ++.+|+||.|-|..
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~  159 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN  159 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence                              00112334445555555 4899999999998755433  24677766 89999999999987


Q ss_pred             CCc
Q 018652          171 PTV  173 (352)
Q Consensus       171 p~~  173 (352)
                      ...
T Consensus       160 S~v  162 (374)
T PRK06617        160 SKV  162 (374)
T ss_pred             chh
Confidence            654

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.01  E-value=9.9e-05  Score=70.56  Aligned_cols=99  Identities=16%  Similarity=0.247  Sum_probs=69.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------------------------  108 (352)
                      ++|+|||||..|+-+|..|++.|.+|+++++.+.+..                                           
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            7899999999999999999999999999997632100                                           


Q ss_pred             ccc------------C--------HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEc---CCCCEEEcCEEE
Q 018652          109 RLF------------T--------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV  164 (352)
Q Consensus       109 ~~~------------~--------~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi  164 (352)
                      ..+            +        ..+.+.+.+.+.+ .++++++++++++++..+++ + .+++   .+++++++|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvI  160 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLI  160 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEE
Confidence            000            0        1222334444444 37999999999999754333 2 3333   344679999999


Q ss_pred             EccCCCCC
Q 018652          165 IGIGAKPT  172 (352)
Q Consensus       165 ~a~G~~p~  172 (352)
                      -|-|....
T Consensus       161 gADG~~S~  168 (400)
T PRK06475        161 ACDGVWSM  168 (400)
T ss_pred             ECCCccHh
Confidence            99998754

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.99  E-value=2e-05  Score=79.88  Aligned_cols=92  Identities=21%  Similarity=0.264  Sum_probs=67.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------cc-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.|+++++++.+. .  
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~--  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R--  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence            45799999999999999999999999999999876541       11 1345566666777889999999887541 1  


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                             .+.+.+. ...+|.||+|+|..+.
T Consensus       269 -------dv~~~~~-~~~~DaVilAtGa~~~  291 (652)
T PRK12814        269 -------DITLEEL-QKEFDAVLLAVGAQKA  291 (652)
T ss_pred             -------ccCHHHH-HhhcCEEEEEcCCCCC
Confidence                   1122222 2359999999998753

>PRK06185 hypothetical protein; Provisional

Probab=97.99  E-value=0.00011  Score=70.36  Aligned_cols=101  Identities=24%  Similarity=0.307  Sum_probs=71.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------------------------c--------------c-
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------Q--------------R-  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------------------------~--------------~-  109 (352)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.+.                          .              . 
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            4579999999999999999999999999999752110                          0              0 


Q ss_pred             ---c----------------cCHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEE--EcCCCC-EEEcCEEEEc
Q 018652          110 ---L----------------FTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAV--KLEDGS-TIDADTIVIG  166 (352)
Q Consensus       110 ---~----------------~~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v--~~~~g~-~i~~D~vi~a  166 (352)
                         .                ....+.+.+.+.+.+ .|++++.+++++++..+ ++.+..+  ...+|+ ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence               0                001222334444444 48999999999999755 3444333  345664 7999999999


Q ss_pred             cCCCCC
Q 018652          167 IGAKPT  172 (352)
Q Consensus       167 ~G~~p~  172 (352)
                      .|....
T Consensus       165 dG~~S~  170 (407)
T PRK06185        165 DGRHSR  170 (407)
T ss_pred             CCCchH
Confidence            998753

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.99  E-value=6.7e-05  Score=73.13  Aligned_cols=95  Identities=26%  Similarity=0.376  Sum_probs=65.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-----ccc------------------------------C-HHH
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----RLF------------------------------T-PSL  115 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-----~~~------------------------------~-~~~  115 (352)
                      -+++|||+|+.|+.+|..++++|.+|.++++.. +-.     .+.                              + .++
T Consensus         5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   83 (462)
T PRK06416          5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV   83 (462)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence            479999999999999999999999999999763 100     000                              0 111


Q ss_pred             HHH-----------HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-CCEEEcCEEEEccCCCCC
Q 018652          116 AQR-----------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       116 ~~~-----------l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~  172 (352)
                      .++           +...+++.||+++.++ ++.++.    ....+...+ ++++.+|.+|+|||.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~~----~~~~v~~~~~~~~~~~d~lViAtGs~p~  147 (462)
T PRK06416         84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVDP----NTVRVMTEDGEQTYTAKNIILATGSRPR  147 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC----CEEEEecCCCcEEEEeCEEEEeCCCCCC
Confidence            112           4445677899999874 344431    222444333 467999999999999986

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.98  E-value=8.9e-05  Score=70.49  Aligned_cols=99  Identities=24%  Similarity=0.335  Sum_probs=70.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------------c-
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R-  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------------------------~-  109 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                        . 
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~   86 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL   86 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence            35799999999999999999999999999997632100                                        0 


Q ss_pred             ------cc---------------CHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652          110 ------LF---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  167 (352)
Q Consensus       110 ------~~---------------~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  167 (352)
                            .+               ...+.+.+.+.+.+. ++. +.++++.+++..+++ + .+++++|+++.+|.||.|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~Ad  163 (388)
T PRK07494         87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGAD  163 (388)
T ss_pred             CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEec
Confidence                  00               011233444555555 466 778999999754333 3 5778888899999999999


Q ss_pred             CCCCC
Q 018652          168 GAKPT  172 (352)
Q Consensus       168 G~~p~  172 (352)
                      |....
T Consensus       164 G~~S~  168 (388)
T PRK07494        164 GRNSP  168 (388)
T ss_pred             CCCch
Confidence            98764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.98  E-value=6.1e-05  Score=73.12  Aligned_cols=94  Identities=27%  Similarity=0.443  Sum_probs=65.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----c-------------------------------cC-H-
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----L-------------------------------FT-P-  113 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~-------------------------------~~-~-  113 (352)
                      ..++|||+|+.|+.+|..++++|.+|+++++.. +-..     +                               ++ + 
T Consensus         3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (450)
T TIGR01421         3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE   81 (450)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence            469999999999999999999999999999752 1000     0                               00 0 


Q ss_pred             ----------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          114 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       114 ----------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                                .+.+.+...+++.||+++.++..  +.  ++.   .|.. +++.+.+|.+|+|||.+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~~--~~~---~v~v-~~~~~~~d~vIiAtGs~p~~p  144 (450)
T TIGR01421        82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--FT--KDG---TVEV-NGRDYTAPHILIATGGKPSFP  144 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--Ec--cCC---EEEE-CCEEEEeCEEEEecCCCCCCC
Confidence                      11223455677889999988642  22  122   2333 566799999999999998644

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06370 mercuric reductase; Validated

Probab=97.98  E-value=5e-05  Score=74.08  Aligned_cols=95  Identities=24%  Similarity=0.347  Sum_probs=64.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----cc-----------------------------C---H
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LF-----------------------------T---P  113 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~~-----------------------------~---~  113 (352)
                      ...++|||+|+.|+.+|..++++|.+|+++++.. +...     +.                             .   +
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   83 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK   83 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence            3579999999999999999999999999999752 1000     00                             0   0


Q ss_pred             HH-----------HHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          114 SL-----------AQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       114 ~~-----------~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      .+           ...+...+++. ||+++.++.+ .++   ..   .+.. +++++.+|.+|+|||.+|...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~~~---~~---~v~v-~~~~~~~d~lViATGs~p~~p  148 (463)
T PRK06370         84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-FES---PN---TVRV-GGETLRAKRIFINTGARAAIP  148 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-Ecc---CC---EEEE-CcEEEEeCEEEEcCCCCCCCC
Confidence            01           12334556666 9999987643 111   22   2333 456799999999999998754

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.97  E-value=2.2e-05  Score=79.85  Aligned_cols=91  Identities=20%  Similarity=0.325  Sum_probs=66.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..        ..++.++.....+.+++.|+++++++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            468999999999999999999999999999998765321        113455555566778889999999886521   


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                             .+.+.+. ...+|.|++++|..+
T Consensus       403 -------~i~~~~~-~~~~DavilAtGa~~  424 (654)
T PRK12769        403 -------DISLESL-LEDYDAVFVGVGTYR  424 (654)
T ss_pred             -------cCCHHHH-HhcCCEEEEeCCCCC
Confidence                   0111111 246999999999854

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.96  E-value=0.00036  Score=66.26  Aligned_cols=152  Identities=19%  Similarity=0.250  Sum_probs=99.4

Q ss_pred             ECCChHHHHHHHHHH-hCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC
Q 018652           77 VGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG  155 (352)
Q Consensus        77 vGgG~~g~e~A~~l~-~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g  155 (352)
                      +|-+.. .++-..|. ..|..|.-+-.   +-|...+..+.+.+.+.+++.|++++.++.|.++... ++.+..+.+.++
T Consensus       230 lG~~~~-~~~~~~L~~~~g~~v~E~pt---lPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g  304 (419)
T TIGR03378       230 FGLGDG-LELLRELEQATGLTLCELPT---MPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNH  304 (419)
T ss_pred             eCCCCh-HHHHHHHHHHHCCCEEeCCC---CCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCC
Confidence            354432 23334443 34666665432   2234466788889999999999999999999998754 455666776666


Q ss_pred             --CEEEcCEEEEccCCC-CCchhhhhc--------CCcc--------------------cCCcEEeCCCCCC-----CCC
Q 018652          156 --STIDADTIVIGIGAK-PTVSPFERV--------GLNS--------------------SVGGIQVDGQFRT-----RMP  199 (352)
Q Consensus       156 --~~i~~D~vi~a~G~~-p~~~~~~~~--------gl~~--------------------~~g~i~vd~~~~t-----~~~  199 (352)
                        ..+.+|.+|+|+|.- .. .++++.        +++.                    ..-||.+|++||.     ..+
T Consensus       305 ~~~~l~AD~vVLAaGaw~S~-gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~  383 (419)
T TIGR03378       305 RDIPLRADHFVLASGSFFSN-GLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIE  383 (419)
T ss_pred             ccceEECCEEEEccCCCcCH-HHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccc
Confidence              479999999999987 33 333221        2221                    1126889999983     379


Q ss_pred             CEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652          200 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  238 (352)
Q Consensus       200 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  238 (352)
                      |+||+|-+....++..-..    --..|+..|-.||++|
T Consensus       384 Nl~a~G~vL~G~d~~~~gc----G~GVai~Ta~~aa~~i  418 (419)
T TIGR03378       384 NLYAIGAVLGGYDPIFEGC----GSGVAVSTALHAAEQI  418 (419)
T ss_pred             cceEechhhcCCChHhcCC----CchhHHHHHHHHHHhh
Confidence            9999999988776532110    1113677777777766

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.96  E-value=0.00011  Score=70.05  Aligned_cols=106  Identities=28%  Similarity=0.391  Sum_probs=73.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhC---CCcEEEEecCC-c-------------c-------------cc-------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H-------------L-------------LQ-------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~---g~~Vtvv~~~~-~-------------~-------------~~-------------  108 (352)
                      .+|+|||+|+.|+-+|..|++.   |.+|+|+++.. .             +             +.             
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4699999999999999999998   99999999831 0             0             00             


Q ss_pred             ---c------cc---------------CHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEE
Q 018652          109 ---R------LF---------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  163 (352)
Q Consensus       109 ---~------~~---------------~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v  163 (352)
                         .      .+               -..+.+.+.+.+.+ .|++++.+++++++...++ . ..+.+.+|+++.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~-~-~~v~~~~g~~~~a~~v  161 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQG-S-VRVTLDDGETLTGRLL  161 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC-e-EEEEECCCCEEEeCEE
Confidence               0      00               00112334444444 4799999999999975433 2 2577788888999999


Q ss_pred             EEccCCCCCchhhhhcCC
Q 018652          164 VIGIGAKPTVSPFERVGL  181 (352)
Q Consensus       164 i~a~G~~p~~~~~~~~gl  181 (352)
                      |.|.|....  +.+.+++
T Consensus       162 I~AdG~~S~--vr~~~~~  177 (395)
T PRK05732        162 VAADGSHSA--LREALGI  177 (395)
T ss_pred             EEecCCChh--hHHhhCC
Confidence            999998764  3344443

>PRK10015 oxidoreductase; Provisional

Probab=97.96  E-value=0.00012  Score=70.54  Aligned_cols=98  Identities=19%  Similarity=0.330  Sum_probs=71.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc------------------cccc-----------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQRL-----------------------  110 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~------------------~~~~-----------------------  110 (352)
                      ..|+|||||+.|+-+|..|++.|.+|.++++.+.+                  .+..                       
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            47999999999999999999999999999976321                  0000                       


Q ss_pred             --c------------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          111 --F------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       111 --~------------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                        +                  -..+..++.+..++.|++++.++.|+.+... ++.+..+.. ++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN  163 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence              0                  0112234566677889999999999998754 345544543 44579999999999975


Q ss_pred             C
Q 018652          171 P  171 (352)
Q Consensus       171 p  171 (352)
                      .
T Consensus       164 s  164 (429)
T PRK10015        164 S  164 (429)
T ss_pred             h
Confidence            4

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.95  E-value=0.00021  Score=68.65  Aligned_cols=136  Identities=15%  Similarity=0.230  Sum_probs=87.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc----------------------------------------cc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QR  109 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~----------------------------------------~~  109 (352)
                      ..++++|||+|++|+-.|..|.+.|.++++++|.+.+.                                        ++
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            36889999999999999999999999999999883320                                        11


Q ss_pred             c-cCH-HHHHHHHHHHHhCCc--EEEcCCeEEEEEecCCCcEEEEEcCCC----CEEEcCEEEEccCCC--CCchhhhhc
Q 018652          110 L-FTP-SLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFERV  179 (352)
Q Consensus       110 ~-~~~-~~~~~l~~~l~~~gV--~~~~~~~v~~i~~~~~~~~~~v~~~~g----~~i~~D~vi~a~G~~--p~~~~~~~~  179 (352)
                      . .+. ++-++|+...+..++  .+.+++.+.+++...++. ..|.+.+.    ++.-+|.|++|+|.-  |+.+.....
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~  163 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP  163 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence            1 111 556677777777775  567788788887553333 34554443    356799999999986  655444332


Q ss_pred             CCcccCCcEEeCCCCCC----CCCCEEEecc
Q 018652          180 GLNSSVGGIQVDGQFRT----RMPGIFAIGD  206 (352)
Q Consensus       180 gl~~~~g~i~vd~~~~t----~~~~Iya~GD  206 (352)
                      +++.=.|.+.=.-..+.    ....|..+|-
T Consensus       164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~  194 (448)
T KOG1399|consen  164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGC  194 (448)
T ss_pred             chhhcCCcceehhhccCcccccCceEEEECC
Confidence            22221233332212221    2366778874

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.95  E-value=8.2e-05  Score=72.57  Aligned_cols=96  Identities=34%  Similarity=0.496  Sum_probs=63.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-----cCHH-----------------------------HH-
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTPS-----------------------------LA-  116 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----~~~~-----------------------------~~-  116 (352)
                      ..++|||+|+.|+.+|..+++.|.+|+++++...+-..+     .+..                             +. 
T Consensus         4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   83 (466)
T PRK06115          4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ   83 (466)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence            469999999999999999999999999999642221100     0000                             00 


Q ss_pred             -------------HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCC
Q 018652          117 -------------QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT  172 (352)
Q Consensus       117 -------------~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~  172 (352)
                                   ..+...+++.+|+++.+.  .++..  +.+ ..+...+|+  ++++|.+|+|||.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a~~~~--~~~-v~v~~~~g~~~~~~~d~lVIATGs~p~  149 (466)
T PRK06115         84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGW--GRLDG--VGK-VVVKAEDGSETQLEAKDIVIATGSEPT  149 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--EEEcc--CCE-EEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence                         112233455677777654  34432  222 245556664  6999999999999985

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.95  E-value=0.00011  Score=72.63  Aligned_cols=98  Identities=19%  Similarity=0.329  Sum_probs=71.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc------------------cc-------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR-------------------------  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~------------------~~-------------------------  109 (352)
                      .|+|||+|..|+++|..+++.|.+|.++++.....                  ..                         
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            58999999999999999999999999998652110                  00                         


Q ss_pred             ----------ccCH-HHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          110 ----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       110 ----------~~~~-~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                                .+++ .+...+.+.+++. ++.++.+ .++.+...+++.+..|.+.+|..+.||.||+|+|.-.
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                      0000 1123455556666 7888755 5666654335677889999999999999999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.95  E-value=0.00014  Score=69.50  Aligned_cols=108  Identities=18%  Similarity=0.266  Sum_probs=79.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------c------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------R------------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------~------------------------  109 (352)
                      ..|+|||+|+.|.-+|..|++.|.+|.++++.+.+-.                  .                        
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~   83 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE   83 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence            4699999999999999999999999999998632200                  0                        


Q ss_pred             -------cc-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCC
Q 018652          110 -------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL  181 (352)
Q Consensus       110 -------~~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl  181 (352)
                             .+ -..+.+++.+..++.|.+++.++.+..+..++++.+..+ ..++.++.++.||.|.|....  +.+.+++
T Consensus        84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~--l~~~lg~  160 (396)
T COG0644          84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSA--LARKLGL  160 (396)
T ss_pred             cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchH--HHHHhCC
Confidence                   00 123445677788889999999999999987655554433 344478999999999997653  3444444


Q ss_pred             c
Q 018652          182 N  182 (352)
Q Consensus       182 ~  182 (352)
                      .
T Consensus       161 ~  161 (396)
T COG0644         161 K  161 (396)
T ss_pred             C
Confidence            3

>PLN02661 Putative thiazole synthesis

Probab=97.93  E-value=0.00034  Score=64.72  Aligned_cols=164  Identities=18%  Similarity=0.231  Sum_probs=95.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEecCCcccc----------cc----------------cC-----------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ----------RL----------------FT-----------  112 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~~----------~~----------------~~-----------  112 (352)
                      ...|+|||+|..|+-+|..|++. |.+|+++++...+-.          ..                ++           
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha  171 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA  171 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence            45899999999999999999975 899999998643210          00                00           


Q ss_pred             HHHHHHHH-HHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc------CC--C------CEEEcCEEEEccCCCCCch---
Q 018652          113 PSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL------ED--G------STIDADTIVIGIGAKPTVS---  174 (352)
Q Consensus       113 ~~~~~~l~-~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~------~~--g------~~i~~D~vi~a~G~~p~~~---  174 (352)
                      ..+...+. +.+++.||+++.++.+.++... ++++.++.+      .+  +      ..+.++.||+|||..+...   
T Consensus       172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~  250 (357)
T PLN02661        172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG  250 (357)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhh
Confidence            11112233 3444578999999999888754 456666553      11  1      2689999999999765321   


Q ss_pred             --hhhhcCCccc-C--CcEEeCC--CC---CC--CCCCEEEeccccccC--CccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          175 --PFERVGLNSS-V--GGIQVDG--QF---RT--RMPGIFAIGDVAAFP--LKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       175 --~~~~~gl~~~-~--g~i~vd~--~~---~t--~~~~Iya~GD~a~~~--~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                        .+.+.++... .  ....++.  .+   .|  -+|++|++|=.+.-.  .+..|.     .+..-...|+.+|+.++.
T Consensus       251 ~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp-----~fg~m~~sg~k~a~~~~~  325 (357)
T PLN02661        251 VKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGP-----TFGAMMISGQKAAHLALK  325 (357)
T ss_pred             hhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCc-----hhHhHHhhhHHHHHHHHH
Confidence              1112222110 0  0111111  00   12  379999999776522  222222     222223567888877764

>PRK09897 hypothetical protein; Provisional

Probab=97.93  E-value=0.00017  Score=71.09  Aligned_cols=99  Identities=17%  Similarity=0.226  Sum_probs=66.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccc-----------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ-----------------------------------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~-----------------------------------------  108 (352)
                      ++|+|||+|+.|+-+|..|.+.+  .+|+|++++..+..                                         
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            57999999999999999998765  47999998632210                                         


Q ss_pred             -----------------cc-cCHHHHHHH---HHHHHhCC--cEEEcCCeEEEEEecCCCcEEEEEcCC-CCEEEcCEEE
Q 018652          109 -----------------RL-FTPSLAQRY---EQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIV  164 (352)
Q Consensus       109 -----------------~~-~~~~~~~~l---~~~l~~~g--V~~~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi  164 (352)
                                       +. ++.-+...+   .+.+.+.|  +.++.+++|+.++..+++  ..+.+.+ |..+.+|.||
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence                             00 010111122   22234455  788888899999865433  3466655 4679999999


Q ss_pred             EccCCCCC
Q 018652          165 IGIGAKPT  172 (352)
Q Consensus       165 ~a~G~~p~  172 (352)
                      +|+|..++
T Consensus       160 LAtGh~~p  167 (534)
T PRK09897        160 IATGHVWP  167 (534)
T ss_pred             ECCCCCCC
Confidence            99998543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.91  E-value=0.00078  Score=65.17  Aligned_cols=138  Identities=20%  Similarity=0.305  Sum_probs=89.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCc-EEEEecCCccc-------------------------c----cccC--HHHHH
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLL-------------------------Q----RLFT--PSLAQ  117 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~~~~-------------------------~----~~~~--~~~~~  117 (352)
                      ...+|+|||+|++|+-+|..|.+.|.. +.+++++..+-                         +    ..+.  +.+..
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~   86 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD   86 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence            346799999999999999999999998 99999874220                         0    0111  12567


Q ss_pred             HHHHHHHhCCcE--EEcCCeEEEEEecCCCcEEEEEcCCCCE--EEcCEEEEccCC--CCCchhhhhcCCcccCCcEEeC
Q 018652          118 RYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGA--KPTVSPFERVGLNSSVGGIQVD  191 (352)
Q Consensus       118 ~l~~~l~~~gV~--~~~~~~v~~i~~~~~~~~~~v~~~~g~~--i~~D~vi~a~G~--~p~~~~~~~~gl~~~~g~i~vd  191 (352)
                      ++...+++.++.  +..++.|+.+..++++....|.+++|..  +.+|.||+|||.  .|+.+-+.  |++.-.|.+.=.
T Consensus        87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~--G~~~f~g~~~HS  164 (443)
T COG2072          87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA--GLDEFKGRILHS  164 (443)
T ss_pred             HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC--CccCCCceEEch
Confidence            788888887754  4456667667666667677888888865  459999999997  34433222  222222222211


Q ss_pred             C----CCCCCCCCEEEeccccc
Q 018652          192 G----QFRTRMPGIFAIGDVAA  209 (352)
Q Consensus       192 ~----~~~t~~~~Iya~GD~a~  209 (352)
                      .    ...-.-++|-++|--++
T Consensus       165 ~~~~~~~~~~GKrV~VIG~GaS  186 (443)
T COG2072         165 ADWPNPEDLRGKRVLVIGAGAS  186 (443)
T ss_pred             hcCCCccccCCCeEEEECCCcc
Confidence            1    11224467888885443

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.91  E-value=7e-05  Score=70.75  Aligned_cols=94  Identities=22%  Similarity=0.305  Sum_probs=63.8

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccc--------cccCHHHHH-------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ--------RLFTPSLAQ-------------------------  117 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~--------~~~~~~~~~-------------------------  117 (352)
                      .|+|||+|..|+.+|..|++.  |.+|.++++.+.+.+        ..+++....                         
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            479999999999999999987  999999998753221        001111111                         


Q ss_pred             ---------HHHHH-HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          118 ---------RYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       118 ---------~l~~~-l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                               .+.+. +++.+..++++.+|.+++.  +    .+.+.+|+++.+|.||.|.|..+.
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence                     11111 2222344667888888852  2    355588999999999999998764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.90  E-value=0.00016  Score=76.79  Aligned_cols=101  Identities=19%  Similarity=0.176  Sum_probs=69.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHhC-CcEEEcCCeEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN-GVKFVKGASIKNL  139 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~----------~~~~~~~l~~~l~~~-gV~~~~~~~v~~i  139 (352)
                      ..+|+|||+|+.|+..|..+++.|.+|++++..+.+.....          ..+....+.+.+++. ++++++++.|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            35799999999999999999999999999998754422111          123333455556656 5999999998887


Q ss_pred             EecCCCcEEEEE-c--------CC---C--CEEEcCEEEEccCCCCCc
Q 018652          140 EAGSDGRVAAVK-L--------ED---G--STIDADTIVIGIGAKPTV  173 (352)
Q Consensus       140 ~~~~~~~~~~v~-~--------~~---g--~~i~~D~vi~a~G~~p~~  173 (352)
                      ..  ++.+..+. .        ..   +  .++.+|.||+|||..|..
T Consensus       243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~  288 (985)
T TIGR01372       243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP  288 (985)
T ss_pred             ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence            53  22221111 0        00   1  158999999999998764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.90  E-value=0.00017  Score=68.19  Aligned_cols=59  Identities=22%  Similarity=0.389  Sum_probs=40.6

Q ss_pred             HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcC
Q 018652          118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  180 (352)
Q Consensus       118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g  180 (352)
                      .+.+.+++.|++++.+++|.+++.. ++.+ .|.+.++ ++.+|.||+|+|.... .+++.++
T Consensus       150 ~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g  208 (380)
T TIGR01377       150 ALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLG  208 (380)
T ss_pred             HHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhcc
Confidence            3344456689999999999999854 3333 4666665 6999999999997533 3444444

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR00275 flavoprotein, HI0933 family

Probab=97.89  E-value=0.00013  Score=69.76  Aligned_cols=94  Identities=17%  Similarity=0.370  Sum_probs=68.4

Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCccccc---------------------------------------------
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------------------------------  109 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~---------------------------------------------  109 (352)
                      +|||+|..|+-+|..+++.|.+|+++++.+.+...                                             
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            58999999999999999999999999976432100                                             


Q ss_pred             ----------------cc-----CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652          110 ----------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  168 (352)
Q Consensus       110 ----------------~~-----~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  168 (352)
                                      .+     ...+.+.+.+.+++.|+++++++.++++...+ + ...+.+ +++++.+|.||+|+|
T Consensus        81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~-~~~~i~ad~VIlAtG  157 (400)
T TIGR00275        81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVET-SGGEYEADKVILATG  157 (400)
T ss_pred             HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEE-CCcEEEcCEEEECCC
Confidence                            00     01233445566677899999999999997542 3 234555 466799999999999


Q ss_pred             CCC
Q 018652          169 AKP  171 (352)
Q Consensus       169 ~~p  171 (352)
                      ...
T Consensus       158 ~~s  160 (400)
T TIGR00275       158 GLS  160 (400)
T ss_pred             Ccc
Confidence            753

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06126 hypothetical protein; Provisional

Probab=97.88  E-value=0.00018  Score=71.67  Aligned_cols=102  Identities=25%  Similarity=0.366  Sum_probs=69.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc------------------------------c------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------------------Q------------  108 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~------------------------------~------------  108 (352)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+.                              +            
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            4679999999999999999999999999999762110                              0            


Q ss_pred             -------cc-c--------------------------C-HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652          109 -------RL-F--------------------------T-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL  152 (352)
Q Consensus       109 -------~~-~--------------------------~-~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~  152 (352)
                             +. +                          + ..+...+.+.+++ .++++++++++++++.++++....+..
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~  166 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED  166 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence                   00 0                          0 0122233444444 489999999999998654432222221


Q ss_pred             -CCCC--EEEcCEEEEccCCCCC
Q 018652          153 -EDGS--TIDADTIVIGIGAKPT  172 (352)
Q Consensus       153 -~~g~--~i~~D~vi~a~G~~p~  172 (352)
                       .+|+  ++.+|+||.|.|....
T Consensus       167 ~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        167 LDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             CCCCcEEEEEEEEEEecCCcchH
Confidence             3454  6899999999998764

>TIGR02053 MerA mercuric reductase

Probab=97.88  E-value=0.00012  Score=71.37  Aligned_cols=94  Identities=20%  Similarity=0.397  Sum_probs=63.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc----------------------------------C------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------------------------------T------  112 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~----------------------------------~------  112 (352)
                      .++|||+|+.|+.+|..++++|.+|+++++.+ +...++                                  +      
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   80 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE   80 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence            58999999999999999999999999999752 111000                                  0      


Q ss_pred             --HHHHH-----HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCCCCCch
Q 018652          113 --PSLAQ-----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       113 --~~~~~-----~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~  174 (352)
                        .++..     .+.+.+++.||+++.+. +..++    .+  .|.+.+|+ .+.+|.+|+|||.+|...
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~~----~~--~v~v~~g~~~~~~~~lIiATGs~p~~p  143 (463)
T TIGR02053        81 GKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFKD----PK--TVKVDLGREVRGAKRFLIATGARPAIP  143 (463)
T ss_pred             HHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEcc----CC--EEEEcCCeEEEEeCEEEEcCCCCCCCC
Confidence              01111     13355677899998764 22222    22  45555654 689999999999998744

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.88  E-value=7e-05  Score=70.58  Aligned_cols=100  Identities=22%  Similarity=0.357  Sum_probs=76.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccc---------cccCHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~---------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      ..++++|+|+|+.|.-++..++..|  -+++++.++..+..         ............+.+++.||++++++.++.
T Consensus        73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~  152 (478)
T KOG1336|consen   73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVK  152 (478)
T ss_pred             ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEE
Confidence            3578999999999988888898887  46777765532210         012334555566789999999999999999


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      ++-.+    ..+.+.+|+.+++|.+++|||..|.+
T Consensus       153 ~D~~~----K~l~~~~Ge~~kys~LilATGs~~~~  183 (478)
T KOG1336|consen  153 ADLAS----KTLVLGNGETLKYSKLIIATGSSAKT  183 (478)
T ss_pred             eeccc----cEEEeCCCceeecceEEEeecCcccc
Confidence            97432    26788999999999999999997654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.86  E-value=1.2e-05  Score=77.39  Aligned_cols=107  Identities=25%  Similarity=0.346  Sum_probs=27.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-----------------------------c--------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------R--------------  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-----------------------------~--------------  109 (352)
                      .|+|||||+.|+-.|..+++.|.+|.|+++.+.+-.                             +              
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            489999999999999999999999999998843200                             0              


Q ss_pred             -----ccCH-HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---CCEEEcCEEEEccCCCCCchhhhhcC
Q 018652          110 -----LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERVG  180 (352)
Q Consensus       110 -----~~~~-~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g~~i~~D~vi~a~G~~p~~~~~~~~g  180 (352)
                           .+++ .....+.+.+++.|+++++++.+.++..+ ++++..|.+.+   ..++.++.+|-|||. .  +++..+|
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g--~l~~~aG  156 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD-G--DLAALAG  156 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc-c--ccccccc
Confidence                 1111 12234566777889999999999999864 56777787765   457999999999994 2  4444555


Q ss_pred             Ccc
Q 018652          181 LNS  183 (352)
Q Consensus       181 l~~  183 (352)
                      .+.
T Consensus       157 ~~~  159 (428)
T PF12831_consen  157 APY  159 (428)
T ss_dssp             ---
T ss_pred             ccc
Confidence            543

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.85  E-value=0.00021  Score=69.20  Aligned_cols=101  Identities=22%  Similarity=0.341  Sum_probs=72.6

Q ss_pred             eEEEECCChHHHHHHHHHHh----CCCcEEEEecCC--ccc--------------------------------cc-----
Q 018652           73 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL--------------------------------QR-----  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~----~g~~Vtvv~~~~--~~~--------------------------------~~-----  109 (352)
                      .|+|||||+.|+-+|..|++    .|.+|+|+++.+  ...                                ..     
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            58999999999999999998    799999999721  100                                00     


Q ss_pred             ------------------cc--------------CHHHHHHHHHHHHhCC---cEEEcCCeEEEEEec-----CCCcEEE
Q 018652          110 ------------------LF--------------TPSLAQRYEQLYQQNG---VKFVKGASIKNLEAG-----SDGRVAA  149 (352)
Q Consensus       110 ------------------~~--------------~~~~~~~l~~~l~~~g---V~~~~~~~v~~i~~~-----~~~~~~~  149 (352)
                                        .+              ...+...+.+.+.+.+   ++++.++++.+++..     +++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                              00              0112333455556654   999999999999632     1223346


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCc
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      +.+.+|+++.+|+||-|-|.....
T Consensus       162 v~~~~g~~i~a~llVgADG~~S~v  185 (437)
T TIGR01989       162 ITLSDGQVLYTKLLIGADGSNSNV  185 (437)
T ss_pred             EEEcCCCEEEeeEEEEecCCCChh
Confidence            788999999999999999987754

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.84  E-value=0.0002  Score=68.75  Aligned_cols=98  Identities=16%  Similarity=0.258  Sum_probs=67.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcccccc----cCHH---------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL----FTPS---------------------------------  114 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~~~----~~~~---------------------------------  114 (352)
                      +|+|||||..|+-+|..|++.| .+|+|+++.+.+....    +.+.                                 
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 5999999874321000    0000                                 


Q ss_pred             --------------------H-HHHHHHHHHhC--CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          115 --------------------L-AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       115 --------------------~-~~~l~~~l~~~--gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                                          + ...+.+.|.+.  +..++.++++++++..+++  ..+.+.+|+++++|.||.|.|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence                                0 01122222221  4567889999999865433  367788999999999999999765


Q ss_pred             C
Q 018652          172 T  172 (352)
Q Consensus       172 ~  172 (352)
                      .
T Consensus       160 ~  160 (414)
T TIGR03219       160 A  160 (414)
T ss_pred             H
Confidence            3

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.84  E-value=0.00016  Score=65.14  Aligned_cols=103  Identities=18%  Similarity=0.289  Sum_probs=72.8

Q ss_pred             cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCE--EEcCEEEEccCCCCCchhhh----------h
Q 018652          111 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFE----------R  178 (352)
Q Consensus       111 ~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~--i~~D~vi~a~G~~p~~~~~~----------~  178 (352)
                      ++-.+.+.+...+++.|.-+..+.+|...+- .+++++.|.+.+...  +.+|..|+|+|.--...+..          +
T Consensus       256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~  334 (421)
T COG3075         256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD  334 (421)
T ss_pred             hhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence            3445677888889999999999999998873 477888898888764  56999999999643322211          1


Q ss_pred             cCCcc------------------cCCcEEeCCCCCCC-----CCCEEEeccccccCCcc
Q 018652          179 VGLNS------------------SVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKM  214 (352)
Q Consensus       179 ~gl~~------------------~~g~i~vd~~~~t~-----~~~Iya~GD~a~~~~~~  214 (352)
                      +.+..                  ..=++.+|+++|.+     ..|+||+|.+.+..++.
T Consensus       335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi  393 (421)
T COG3075         335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPI  393 (421)
T ss_pred             cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHH
Confidence            11110                  01267888888853     57899999999876653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.83  E-value=0.00031  Score=66.98  Aligned_cols=101  Identities=18%  Similarity=0.153  Sum_probs=71.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--c-----------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q-----------------------------------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--~-----------------------------------------  108 (352)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+...  .                                         
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            579999999999999999999999999999774210  0                                         


Q ss_pred             --c-cc-------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-CCCC--EEEcCEEEEccCC
Q 018652          109 --R-LF-------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA  169 (352)
Q Consensus       109 --~-~~-------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~  169 (352)
                        . .+             -+.+.+.+.+...+.|+++++++++++++..++.. ..|.+ .+|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~  161 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGF  161 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCC
Confidence              0 00             01222334444466799999999999987522222 24555 4664  6899999999998


Q ss_pred             CCCc
Q 018652          170 KPTV  173 (352)
Q Consensus       170 ~p~~  173 (352)
                      ....
T Consensus       162 ~S~v  165 (392)
T PRK08243        162 HGVS  165 (392)
T ss_pred             CCch
Confidence            7653

>PRK13748 putative mercuric reductase; Provisional

Probab=97.83  E-value=0.00027  Score=70.66  Aligned_cols=98  Identities=28%  Similarity=0.400  Sum_probs=64.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc---------------------------cc--cc---C-----HH
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------------QR--LF---T-----PS  114 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~---------------------------~~--~~---~-----~~  114 (352)
                      ..++|||+|+.|+.+|..+++.|.+|.+++++. +-                           +.  .+   .     ..
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  177 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSR  177 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHHH
Confidence            589999999999999999999999999999762 10                           00  00   0     01


Q ss_pred             HHHH------------HHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCchh
Q 018652          115 LAQR------------YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP  175 (352)
Q Consensus       115 ~~~~------------l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~  175 (352)
                      +.++            ....+++. +|+++.+. +..++   . ....|.+.+|+  ++.+|.||+|||.+|....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~-~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~  248 (561)
T PRK13748        178 LLAQQQARVDELRHAKYEGILDGNPAITVLHGE-ARFKD---D-QTLIVRLNDGGERVVAFDRCLIATGASPAVPP  248 (561)
T ss_pred             HHHHHHHHHHHHhcccHHHHHhccCCeEEEEEE-EEEec---C-CEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC
Confidence            1111            11223444 78888763 44332   2 22355566664  6999999999999987543

>PRK06996 hypothetical protein; Provisional

Probab=97.83  E-value=0.00021  Score=68.23  Aligned_cols=99  Identities=18%  Similarity=0.257  Sum_probs=72.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC----CcEEEEecCCcc------------------c--------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHL------------------L--------------------  107 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g----~~Vtvv~~~~~~------------------~--------------------  107 (352)
                      ...+|+|||||+.|+-+|..|++.|    .+|+++++.+..                  +                    
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~   89 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ   89 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence            4568999999999999999999986    469999975210                  0                    


Q ss_pred             -cc------------------cc-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC---CEEEcCEEE
Q 018652          108 -QR------------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV  164 (352)
Q Consensus       108 -~~------------------~~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi  164 (352)
                       ..                  .. -..+.+.+.+.+.+.|++++.++++++++...++  ..+.+.++   +++.+|+||
T Consensus        90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvI  167 (398)
T PRK06996         90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAV  167 (398)
T ss_pred             CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEE
Confidence             00                  00 1244566777778889999999999999754443  24566654   589999999


Q ss_pred             EccCCC
Q 018652          165 IGIGAK  170 (352)
Q Consensus       165 ~a~G~~  170 (352)
                      -|.|..
T Consensus       168 gADG~~  173 (398)
T PRK06996        168 QAEGGL  173 (398)
T ss_pred             ECCCCC
Confidence            999964

>PLN02546 glutathione reductase

Probab=97.82  E-value=0.00013  Score=72.44  Aligned_cols=95  Identities=21%  Similarity=0.390  Sum_probs=65.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEec----------CC--------------ccc------c---c--ccC----
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP----------EN--------------HLL------Q---R--LFT----  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~----------~~--------------~~~------~---~--~~~----  112 (352)
                      -.++|||+|..|+.+|..++++|.+|.++++          +.              .++      .   .  .++    
T Consensus        80 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~  159 (558)
T PLN02546         80 FDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYE  159 (558)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccC
Confidence            3699999999999999999999999999995          10              000      0   0  000    


Q ss_pred             ------------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          113 ------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       113 ------------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                                        ..+...+.+.+++.||+++.+. .+.++..      .|.. +|+++.+|.||+|||.+|...
T Consensus       160 ~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~vd~~------~V~v-~G~~~~~D~LVIATGs~p~~P  231 (558)
T PLN02546        160 TEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIVDPH------TVDV-DGKLYTARNILIAVGGRPFIP  231 (558)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEccCC------EEEE-CCEEEECCEEEEeCCCCCCCC
Confidence                              0122345566788899999763 4444421      3333 577899999999999998654

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.81  E-value=0.00023  Score=67.43  Aligned_cols=97  Identities=24%  Similarity=0.279  Sum_probs=70.0

Q ss_pred             eEEEECCChHHHHHHHHH--HhCCCcEEEEecCCcc--cc----------------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQ----------------------------------------  108 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l--~~~g~~Vtvv~~~~~~--~~----------------------------------------  108 (352)
                      .|+|||+|+.|+.+|..|  .+.|.+|.++++.+..  -.                                        
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            379999999999999999  7889999999876332  00                                        


Q ss_pred             --cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          109 --RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       109 --~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                        ..-...+.+.+.+.+.+.++ ...+..|++|+..++  ...+.+++|+++.++.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence              00112333455555564454 556788999986533  34678899999999999999996654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK13984 putative oxidoreductase; Provisional

Probab=97.80  E-value=6.6e-05  Score=75.68  Aligned_cols=91  Identities=20%  Similarity=0.219  Sum_probs=66.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++++|||+|+.|+.+|..|+++|.+|+++++.+.+..        ..++.++.....+.+++.|++++.++.+..   
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  358 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK---  358 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence            578899999999999999999999999999988764411        012344545556778899999999976631   


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                        +     +..++ ....+|.||+|+|..+
T Consensus       359 --~-----~~~~~-~~~~yD~vilAtGa~~  380 (604)
T PRK13984        359 --D-----IPLEE-LREKHDAVFLSTGFTL  380 (604)
T ss_pred             --c-----CCHHH-HHhcCCEEEEEcCcCC
Confidence              0     11111 1357999999999763

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.79  E-value=0.00015  Score=67.36  Aligned_cols=102  Identities=25%  Similarity=0.386  Sum_probs=71.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHhC--CcEEEcCCeEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN--GVKFVKGASIK  137 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~----------~~~~~~~l~~~l~~~--gV~~~~~~~v~  137 (352)
                      +.++|||+|+|+.|+.+...|-..-.+|++|.+++.++-..+          -+.+.+-+....+..  +++++ .....
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~  132 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECT  132 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecccE
Confidence            568999999999999999999888899999999876532111          234555555555444  56665 45667


Q ss_pred             EEEecCCCcEE-EEEcCCC----CEEEcCEEEEccCCCCCc
Q 018652          138 NLEAGSDGRVA-AVKLEDG----STIDADTIVIGIGAKPTV  173 (352)
Q Consensus       138 ~i~~~~~~~~~-~v~~~~g----~~i~~D~vi~a~G~~p~~  173 (352)
                      .++++ ...+. ...++++    -.+.+|.+|+|+|..|++
T Consensus       133 ~iDp~-~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T  172 (491)
T KOG2495|consen  133 KIDPD-NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT  172 (491)
T ss_pred             eeccc-ccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence            77653 22221 2233444    368899999999999886

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.79  E-value=0.00038  Score=65.78  Aligned_cols=47  Identities=23%  Similarity=0.396  Sum_probs=35.8

Q ss_pred             HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       123 l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      +.+.|++++.++.++++...+ +. ..+.+.+| ++.+|.||+|+|....
T Consensus       159 ~~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~g-~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        159 AREAGAELLFNEPVTAIEADG-DG-VTVTTADG-TYEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHHCCCEEECCCEEEEEEeeC-Ce-EEEEeCCC-EEEeeEEEEecCcchh
Confidence            456789999999999998643 33 35677777 6999999999997543

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.78  E-value=3.8e-05  Score=73.14  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=31.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      +|+|||||..|+|+|..|++.|.+|+++++.+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            6899999999999999999999999999976654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.77  E-value=0.00047  Score=65.99  Aligned_cols=52  Identities=19%  Similarity=0.388  Sum_probs=40.0

Q ss_pred             HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      .+.+.+.+.|++++.++.|++++..+++.+..+.+.+| .+.++.||+++|..
T Consensus       188 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~  239 (407)
T TIGR01373       188 GYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence            35566688899999999999997543455556777777 59999998887754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK14694 putative mercuric reductase; Provisional

Probab=97.76  E-value=0.00035  Score=68.26  Aligned_cols=100  Identities=24%  Similarity=0.416  Sum_probs=66.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc---------------------------cc--cccC-----H---
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------LQ--RLFT-----P---  113 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~---------------------------~~--~~~~-----~---  113 (352)
                      .-.++|||+|+.|+.+|..|++.|.+|.++++.. +                           .+  ..+.     .   
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   84 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS   84 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence            4579999999999999999999999999999753 1                           00  0000     0   


Q ss_pred             HHHHH------------HHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCchhh
Q 018652          114 SLAQR------------YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       114 ~~~~~------------l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~~  176 (352)
                      .+.+.            ....+++. +|+++.+ .+..++.  +  ...|.+.+|+  ++++|.+|+|||.+|....+
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~--~--~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i  157 (468)
T PRK14694         85 ALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE--R--TLTVTLNDGGEQTVHFDRAFIGTGARPAEPPV  157 (468)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC--C--EEEEEecCCCeEEEECCEEEEeCCCCCCCCCC
Confidence            11111            11223333 7888876 4666642  2  2356667763  79999999999999875433

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.75  E-value=0.00044  Score=68.19  Aligned_cols=107  Identities=21%  Similarity=0.269  Sum_probs=76.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------  108 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------  108 (352)
                      ...|+|||+|..|+-.|..+++.|.+|.|+++.+.+-.                                          
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d  140 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND  140 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence            45799999999999999999999999999987532100                                          


Q ss_pred             -------------------------------------cc--------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecC
Q 018652          109 -------------------------------------RL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  143 (352)
Q Consensus       109 -------------------------------------~~--------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~  143 (352)
                                                           +.        .+..+...+.+.+++.|+++++++.++++..+ 
T Consensus       141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-  219 (506)
T PRK06481        141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK-  219 (506)
T ss_pred             HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec-
Confidence                                                 00        00123345566667889999999999999753 


Q ss_pred             CCcEEEEEc--CCCC--EEEcCEEEEccC-CCCCchhhhh
Q 018652          144 DGRVAAVKL--EDGS--TIDADTIVIGIG-AKPTVSPFER  178 (352)
Q Consensus       144 ~~~~~~v~~--~~g~--~i~~D~vi~a~G-~~p~~~~~~~  178 (352)
                      ++++..+..  .+++  .+.++.||+|+| +.+|.+++++
T Consensus       220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            566655554  3433  588999999998 6666555443

>PTZ00058 glutathione reductase; Provisional

Probab=97.75  E-value=0.00036  Score=69.31  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -.++|||+|..|+.+|..+++.|.+|.+|++.
T Consensus        49 yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         49 YDLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            36999999999999999999999999999975

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.75  E-value=0.00041  Score=67.13  Aligned_cols=64  Identities=14%  Similarity=0.274  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc--CCCC--EEEcCEEEEccCC-CCCchhhhh
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTIVIGIGA-KPTVSPFER  178 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~--~~g~--~i~~D~vi~a~G~-~p~~~~~~~  178 (352)
                      +...+.+.+++.|+++++++.++++..++++++..+..  .+++  .+.++.||+|+|. ..|.++++.
T Consensus       132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~~  200 (439)
T TIGR01813       132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAK  200 (439)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHHH
Confidence            34455666778899999999999998655666665554  3443  4789999999994 555555443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07538 hypothetical protein; Provisional

Probab=97.75  E-value=0.00036  Score=67.01  Aligned_cols=98  Identities=20%  Similarity=0.263  Sum_probs=66.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------cc-------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LF-------  111 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----------------------------------~~-------  111 (352)
                      +|+|||||+.|+-+|..|++.|.+|+|+++.+.+.+.                                  .+       
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            6999999999999999999999999999977421000                                  00       


Q ss_pred             -------------------CHHHHHHHHHHHHh-CC-cEEEcCCeEEEEEecCCCcEEEEEcCC-----CCEEEcCEEEE
Q 018652          112 -------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVI  165 (352)
Q Consensus       112 -------------------~~~~~~~l~~~l~~-~g-V~~~~~~~v~~i~~~~~~~~~~v~~~~-----g~~i~~D~vi~  165 (352)
                                         -..+.+.+.+.+.+ .| +++++++++++++..+++..  +.+.+     ++++.+|+||-
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg  159 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG  159 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence                               00112223333333 35 57999999999986555533  33333     24899999999


Q ss_pred             ccCCCCC
Q 018652          166 GIGAKPT  172 (352)
Q Consensus       166 a~G~~p~  172 (352)
                      |-|....
T Consensus       160 ADG~~S~  166 (413)
T PRK07538        160 ADGIHSA  166 (413)
T ss_pred             CCCCCHH
Confidence            9998653

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.75  E-value=9.4e-05  Score=73.94  Aligned_cols=92  Identities=22%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeE-EEE
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASI-KNL  139 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v-~~i  139 (352)
                      ..+++|+|||+|++|+.+|..|+++|.+|+++++.+.+..        ..++.+....-.+.+++.|++++.++.+ ..+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~  214 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI  214 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence            4678999999999999999999999999999997654321        1133444454455678899999988754 222


Q ss_pred             EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ...      .  +    ...+|.|++++|..+.
T Consensus       215 ~~~------~--~----~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        215 TLE------Q--L----EGEFDAVFVAIGAQLG  235 (564)
T ss_pred             CHH------H--H----HhhCCEEEEeeCCCCC
Confidence            110      0  1    1248999999998753

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.74  E-value=0.00029  Score=68.67  Aligned_cols=95  Identities=29%  Similarity=0.425  Sum_probs=61.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-----cCH-------HH-------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTP-------SL-------------------------  115 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----~~~-------~~-------------------------  115 (352)
                      .++|||+|+.|+.+|..|++.|.+|+++++ +.+-..+     .+.       ..                         
T Consensus         3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   81 (461)
T TIGR01350         3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKMQ   81 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHHH
Confidence            689999999999999999999999999997 3331100     000       00                         


Q ss_pred             ----------HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEEcCEEEEccCCCCCc
Q 018652          116 ----------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTV  173 (352)
Q Consensus       116 ----------~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~  173 (352)
                                ...+...+++.||+++.+.. ..++   ... ..+...+| .++.+|.+|+|||.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~---~~~-~~v~~~~g~~~~~~d~lVlAtG~~p~~  145 (461)
T TIGR01350        82 KRKNKVVKKLVGGVKGLLKKNKVTVIKGEA-KFLD---PGT-VLVTGENGEETLTAKNIIIATGSRPRS  145 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc---CCE-EEEecCCCcEEEEeCEEEEcCCCCCCC
Confidence                      01112234556778776542 2222   222 24444454 479999999999999864

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.72  E-value=0.00048  Score=67.42  Aligned_cols=100  Identities=25%  Similarity=0.291  Sum_probs=63.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEec------CCccccc---------------------------ccC------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP------ENHLLQR---------------------------LFT------  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~------~~~~~~~---------------------------~~~------  112 (352)
                      ..++|||+|+.|+.+|..+++.|.+|.++++      ...+-..                           .++      
T Consensus         5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~~   84 (475)
T PRK06327          5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDGV   84 (475)
T ss_pred             eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCCC
Confidence            4699999999999999999999999999997      1110000                           000      


Q ss_pred             ----H-----------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          113 ----P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       113 ----~-----------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                          +           .+...+.+.++..+|+++.+. +..+.+..++....+...+++++++|.+|+|||.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~  158 (475)
T PRK06327         85 KIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR  158 (475)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC
Confidence                0           001122334556788888654 3444432233322333334568999999999999985

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.72  E-value=0.00044  Score=56.92  Aligned_cols=93  Identities=25%  Similarity=0.430  Sum_probs=60.0

Q ss_pred             EEECCChHHHHHHHHHHhC-----CCcEEEEecCCcc------------------------ccc----------------
Q 018652           75 VVVGGGYIGMEVAAAAVGW-----KLDTTIIFPENHL------------------------LQR----------------  109 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~-----g~~Vtvv~~~~~~------------------------~~~----------------  109 (352)
                      +|||+|+.|+-++..|.+.     ..+|+|+++.+.-                        .+.                
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~   80 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD   80 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence            5999999999999999877     4678999875110                        000                


Q ss_pred             --------ccCH--HHHHHHH----HHHH--hCCcEEE-cCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          110 --------LFTP--SLAQRYE----QLYQ--QNGVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       110 --------~~~~--~~~~~l~----~~l~--~~gV~~~-~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                              .+.|  .+.+++.    +.++  ..++++. ...+|+.+...+++  ..+.+.+|..+.+|.||+|+|.
T Consensus        81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence                    0000  1122222    2222  2344443 24578888876555  3678899999999999999996

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.72  E-value=1.4e-05  Score=68.41  Aligned_cols=73  Identities=36%  Similarity=0.547  Sum_probs=53.7

Q ss_pred             cCCceEEEECCCcEE----------EeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCC
Q 018652            3 YQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK   72 (352)
Q Consensus         3 ~~~~V~~id~~~~~V----------~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~   72 (352)
                      ++++|.+|+...+.+          ...++.++.||+||||||+.|+. |.++|.  +.....++..++..+......++
T Consensus        77 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~~~~~~~~~  153 (201)
T PF07992_consen   77 LNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRFLELLESPK  153 (201)
T ss_dssp             HHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHHHTHSSTTS
T ss_pred             eccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccccccccccc
Confidence            567899999888842          23456689999999999999764 455553  22223356677888888777777


Q ss_pred             eEEEEC
Q 018652           73 KVVVVG   78 (352)
Q Consensus        73 ~vvVvG   78 (352)
                      +++|||
T Consensus       154 ~v~VvG  159 (201)
T PF07992_consen  154 RVAVVG  159 (201)
T ss_dssp             EEEEES
T ss_pred             cccccc
Confidence            999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.71  E-value=8.4e-05  Score=76.75  Aligned_cols=35  Identities=17%  Similarity=0.101  Sum_probs=32.5

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..+++|+|||+|+.|+.+|..|++.|++||++++.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            35789999999999999999999999999999974

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.70  E-value=0.0005  Score=65.53  Aligned_cols=100  Identities=19%  Similarity=0.238  Sum_probs=68.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--c-----------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q-----------------------------------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--~-----------------------------------------  108 (352)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+...  .                                         
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            579999999999999999999999999999764210  0                                         


Q ss_pred             -------c--------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCC--EEEcCEEEEccCC
Q 018652          109 -------R--------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGA  169 (352)
Q Consensus       109 -------~--------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D~vi~a~G~  169 (352)
                             .        .++ +.+...+.+.+.+.|+.++++..++++...++.. ..|.+. +|+  ++++|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence                   0        000 1222334445556788888888777775322222 245564 675  6899999999998


Q ss_pred             CCC
Q 018652          170 KPT  172 (352)
Q Consensus       170 ~p~  172 (352)
                      ...
T Consensus       162 ~S~  164 (390)
T TIGR02360       162 HGV  164 (390)
T ss_pred             chh
Confidence            764

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.70  E-value=6.5e-05  Score=72.39  Aligned_cols=92  Identities=23%  Similarity=0.303  Sum_probs=69.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|.|||+|+.|+.+|..|++.|++||++++.+.+-..        .++.++.+...+.|++.|++|++++.+-.   
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---  198 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---  198 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence            4589999999999999999999999999999987654221        14567888888999999999999976531   


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCC-CC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~  172 (352)
                             .++++. ..-++|+|++++|.. |+
T Consensus       199 -------~it~~~-L~~e~Dav~l~~G~~~~~  222 (457)
T COG0493         199 -------DITLEE-LLKEYDAVFLATGAGKPR  222 (457)
T ss_pred             -------cCCHHH-HHHhhCEEEEeccccCCC
Confidence                   111111 123459999999964 44

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.70  E-value=0.00049  Score=67.02  Aligned_cols=96  Identities=28%  Similarity=0.401  Sum_probs=62.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc-------------c-------------cc--------c--cC-HHH
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------L-------------QR--------L--FT-PSL  115 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-------------~-------------~~--------~--~~-~~~  115 (352)
                      +++|||+|+.|+..|..+++.|.+|+++++.+.-             +             ..        .  .+ +.+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM   81 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence            6899999999999999999999999999986310             0             00        0  00 001


Q ss_pred             H-----------HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCCCCCc
Q 018652          116 A-----------QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTV  173 (352)
Q Consensus       116 ~-----------~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~  173 (352)
                      .           +.+...+++.+|+++.+. +..++   +.. ..|..++++ ++++|.+|+|||.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~~---~~~-v~v~~~~~~~~~~~d~lviATGs~p~~  146 (458)
T PRK06912         82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFET---DHR-VRVEYGDKEEVVDAEQFIIAAGSEPTE  146 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEcc---CCE-EEEeeCCCcEEEECCEEEEeCCCCCCC
Confidence            0           112234556688887654 22222   222 245555553 69999999999999863

>PLN02507 glutathione reductase

Probab=97.68  E-value=0.00058  Score=67.19  Aligned_cols=99  Identities=21%  Similarity=0.254  Sum_probs=65.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC---------Cccccc-----ccC-------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE---------NHLLQR-----LFT-------------------------  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~---------~~~~~~-----~~~-------------------------  112 (352)
                      ..++|||+|+.|+.+|..++++|.+|.++++.         ..+-..     +.+                         
T Consensus        26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~  105 (499)
T PLN02507         26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEIN  105 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            36999999999999999999999999999951         111000     000                         


Q ss_pred             ----HH--------------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCC
Q 018652          113 ----PS--------------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT  172 (352)
Q Consensus       113 ----~~--------------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~  172 (352)
                          -+              +...+++.+++.||+++.+ .+..+++    ....|.+.+|+  ++.+|.+|+|||.+|.
T Consensus       106 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~g~~~~~~~d~LIIATGs~p~  180 (499)
T PLN02507        106 EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLDGTKLRYTAKHILIATGSRAQ  180 (499)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence                00              0112234456678888876 3444432    22356667776  5889999999999987


Q ss_pred             chh
Q 018652          173 VSP  175 (352)
Q Consensus       173 ~~~  175 (352)
                      ...
T Consensus       181 ~p~  183 (499)
T PLN02507        181 RPN  183 (499)
T ss_pred             CCC
Confidence            543

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00033  Score=59.68  Aligned_cols=99  Identities=15%  Similarity=0.268  Sum_probs=73.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC--------------------CcccccccCHHHHHHHHHHHHhCCcEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--------------------NHLLQRLFTPSLAQRYEQLYQQNGVKF  130 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~--------------------~~~~~~~~~~~~~~~l~~~l~~~gV~~  130 (352)
                      ..+|+|||+|+.+...|.++++...+-.+++-.                    +-+-....++++.+.++++-++.|.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            458999999999999999999887666666522                    112223457889999999999999999


Q ss_pred             EcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          131 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       131 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      ++.+ |..++.  ..+...+.+ +.+.+.+|.||+++|.....
T Consensus        88 ~tEt-Vskv~~--sskpF~l~t-d~~~v~~~avI~atGAsAkR  126 (322)
T KOG0404|consen   88 ITET-VSKVDL--SSKPFKLWT-DARPVTADAVILATGASAKR  126 (322)
T ss_pred             eeee-hhhccc--cCCCeEEEe-cCCceeeeeEEEecccceee
Confidence            9764 666653  233444544 55579999999999987653

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.67  E-value=0.0005  Score=67.00  Aligned_cols=48  Identities=27%  Similarity=0.460  Sum_probs=35.8

Q ss_pred             HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      +.+.+++.|++++.++.|++++.+  + ...|.+.+| ++.+|.||+|+|.-
T Consensus       189 L~~~a~~~Gv~i~~~t~V~~i~~~--~-~~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       189 LRRVALELGVEIHENTPMTGLEEG--Q-PAVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHcCCEEECCCeEEEEeeC--C-ceEEEeCCc-EEECCEEEEccccc
Confidence            344457789999999999999742  2 235677766 59999999999853

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.67  E-value=0.0003  Score=69.71  Aligned_cols=104  Identities=20%  Similarity=0.433  Sum_probs=78.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC---CCcEEEEecCCcc------cccccCH-----HHHHHHHHHHHhCCcEEEcCCeE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL------LQRLFTP-----SLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtvv~~~~~~------~~~~~~~-----~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      ..+++|||.|..|.-+...+.+.   -.+||++...+++      +.+.+.+     ++.-.-.++.+++||+++++.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            46899999999999988888873   4678888655443      2222222     33333457889999999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhh
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER  178 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~  178 (352)
                      ..|++..  +  .|.++.|.++.+|-+|+|||..|.......
T Consensus        83 ~~idr~~--k--~V~t~~g~~~~YDkLilATGS~pfi~PiPG  120 (793)
T COG1251          83 IQIDRAN--K--VVTTDAGRTVSYDKLIIATGSYPFILPIPG  120 (793)
T ss_pred             EEeccCc--c--eEEccCCcEeecceeEEecCccccccCCCC
Confidence            9998642  2  678899999999999999999997654433

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.67  E-value=0.00068  Score=64.51  Aligned_cols=97  Identities=22%  Similarity=0.395  Sum_probs=66.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC-Ccc--------------c------------------cc----------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL--------------L------------------QR----------  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~--------------~------------------~~----------  109 (352)
                      +|+|||+|+.|+-+|..|++.|.+|.++++. +.+              +                  +.          
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            5899999999999999999999999999976 210              0                  00          


Q ss_pred             ---c---cC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC------C--CEEEcCEEEEccCCCCC
Q 018652          110 ---L---FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 ---~---~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~------g--~~i~~D~vi~a~G~~p~  172 (352)
                         .   ++ ..+.+.+.+...+.|++++.+ .++++..++++ . .+.+.+      |  .++.+|.||.|.|....
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~  156 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-V-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP  156 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-E-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence               0   00 022234555567789999765 58888754333 2 344432      2  36999999999997653

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.66  E-value=0.00077  Score=64.38  Aligned_cols=99  Identities=19%  Similarity=0.301  Sum_probs=64.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------------------------------c--------c-
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------R--------L-  110 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------------------------------~--------~-  110 (352)
                      +|+|||+|+.|+.+|..|++.|.+|.++++...+..                                 .        . 
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            689999999999999999999999999997632100                                 0        0 


Q ss_pred             --------cC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEec-CCCcEEEEEc--CC-----C--CEEEcCEEEEccCCCC
Q 018652          111 --------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKL--ED-----G--STIDADTIVIGIGAKP  171 (352)
Q Consensus       111 --------~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~-~~~~~~~v~~--~~-----g--~~i~~D~vi~a~G~~p  171 (352)
                              ++ ..+.+.+.+...+.|++++.++ +..+... ..+....+++  .+     |  .++++++||.|.|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                    00 1112334555677899998775 6666421 1122223332  21     3  3799999999999876


Q ss_pred             C
Q 018652          172 T  172 (352)
Q Consensus       172 ~  172 (352)
                      .
T Consensus       161 ~  161 (398)
T TIGR02028       161 R  161 (398)
T ss_pred             H
Confidence            4

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.65  E-value=0.00065  Score=64.01  Aligned_cols=31  Identities=32%  Similarity=0.496  Sum_probs=28.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      +|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~   32 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS   32 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999999999999999999999865

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.64  E-value=0.00016  Score=69.33  Aligned_cols=98  Identities=23%  Similarity=0.382  Sum_probs=68.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC------------------------------------------ccccc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN------------------------------------------HLLQR  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~------------------------------------------~~~~~  109 (352)
                      -.|+|||||..|+|.|...++.|.++.+++.+.                                          +++..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            579999999999999999999999998887651                                          11111


Q ss_pred             ccCHH------------HHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          110 LFTPS------------LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       110 ~~~~~------------~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      ..+|.            +...+++.++. .++.+..+ .|.++.-.++.++..|.+.+|..+.|+.||++||.-
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF  157 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF  157 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence            11221            22334444444 36666654 355554333335889999999999999999999964

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.63  E-value=0.00014  Score=74.61  Aligned_cols=91  Identities=23%  Similarity=0.329  Sum_probs=70.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|.|||+|+.|+.+|..|.+.|+.|++++|++++-.        .-++..+.++-.++|.+.||+|++|+.+-.   
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk--- 1860 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK--- 1860 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc---
Confidence            578999999999999999999999999999999987622        114566777777889999999999875421   


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                             .+. -|+-.-+.|.||+|+|..-
T Consensus      1861 -------~vs-~d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1861 -------HVS-LDELKKENDAIVLATGSTT 1882 (2142)
T ss_pred             -------ccc-HHHHhhccCeEEEEeCCCC
Confidence                   111 2233456899999999753

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.62  E-value=0.00052  Score=70.02  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+|+|||||.+|+.+|..|+++|.+|+|+++.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~  292 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEAD  292 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence            47999999999999999999999999999976

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.61  E-value=0.00092  Score=65.45  Aligned_cols=65  Identities=14%  Similarity=0.261  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHh----CC--cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCc
Q 018652          115 LAQRYEQLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN  182 (352)
Q Consensus       115 ~~~~l~~~l~~----~g--V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~  182 (352)
                      +...+.+.+++    .|  ++++++++|++++..+ +....|.+.+| ++.+|.||+|+|.-.. .+++.+|+.
T Consensus       213 L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~  283 (497)
T PTZ00383        213 LSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG  283 (497)
T ss_pred             HHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence            44556666677    67  8899999999998642 33456777777 6999999999996543 456666653

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.60  E-value=0.00078  Score=57.60  Aligned_cols=104  Identities=21%  Similarity=0.218  Sum_probs=67.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-------------------------------------cC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FT  112 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-------------------------------------~~  112 (352)
                      ....|+|||+|+.|+.+|..|++.|.+|.+++++..+-...                                     -.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~   95 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS   95 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence            34689999999999999999999999999999874321100                                     01


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-----------CCCEEEcCEEEEccCCCCCc
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~  173 (352)
                      .+....+....-+.|+++.....++.+--.+++++..+...           |--.+++..||-+||...+.
T Consensus        96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence            12223333333458999999988888754334677666542           22379999999999998754

>PRK14727 putative mercuric reductase; Provisional

Probab=97.59  E-value=0.00065  Score=66.58  Aligned_cols=101  Identities=26%  Similarity=0.462  Sum_probs=65.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc---------------------------c--c------ccCHH-
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------------Q--R------LFTPS-  114 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~---------------------------~--~------~~~~~-  114 (352)
                      ...++|||+|+.|+.+|..|+++|.+|+++++.+.+-                           +  .      .++.. 
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   95 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGL   95 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHHH
Confidence            4579999999999999999999999999999762110                           0  0      00000 


Q ss_pred             H-------HH-----HHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCchhh
Q 018652          115 L-------AQ-----RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       115 ~-------~~-----~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~~  176 (352)
                      +       ..     ...+.++.. ||+++.+.  ..+.   +.....|.+.+|+  ++.+|.+|+|||.+|....+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~--a~f~---~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i  167 (479)
T PRK14727         96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGY--ARFK---DGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPI  167 (479)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE--EEEe---cCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCC
Confidence            0       00     122233333 78887664  2333   1223356666764  69999999999999875433

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.59  E-value=0.00077  Score=67.10  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~   38 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERH   38 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence            46999999999999999999999999999976

>PRK11445 putative oxidoreductase; Provisional

Probab=97.57  E-value=0.0011  Score=62.10  Aligned_cols=96  Identities=21%  Similarity=0.241  Sum_probs=66.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------ccccCH-------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTP-------------------------------  113 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------~~~~~~-------------------------------  113 (352)
                      +|+|||+|+.|+-+|..|++. .+|+++++.+.+.        ...+.+                               
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            689999999999999999999 9999999765210        000000                               


Q ss_pred             ------------------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-CCCC--EEEcCEEEEccCCCCC
Q 018652          114 ------------------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPT  172 (352)
Q Consensus       114 ------------------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~  172 (352)
                                        .+.+.+.+ ..+.|++++.++.+++++..+++.  .+.+ .+|+  ++.+|.||.|.|....
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~--~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGY--HVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEE--EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence                              00111222 234689999999999998654432  3443 5664  6899999999998754

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.56  E-value=0.0015  Score=62.66  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++|+|||+|.+|+-+|..|++.|.+|+|++++.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999998763

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.55  E-value=0.00067  Score=66.24  Aligned_cols=32  Identities=31%  Similarity=0.338  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..++|||+|+.|+.+|..++++|.+|++++++
T Consensus         5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            47999999999999999999999999999975

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.53  E-value=0.00088  Score=64.33  Aligned_cols=59  Identities=25%  Similarity=0.416  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCC--EEEcCEEEEccCCCCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT  172 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~  172 (352)
                      ..+...+.+.+++.|+++++++.++++..+ ++++..+...   +|+  ++.++.||+|+|-...
T Consensus       141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  141 KALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            345677788889999999999999999874 6688777765   454  5789999999997654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.52  E-value=0.0015  Score=65.98  Aligned_cols=34  Identities=35%  Similarity=0.436  Sum_probs=31.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..-.|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~  103 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVERE  103 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            3357999999999999999999999999999976

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.51  E-value=0.00071  Score=65.91  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=29.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -.++|||+|+.|+.+|..|++.|.+|.+++++
T Consensus         4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            46999999999999999999999999999973

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.50  E-value=0.0015  Score=63.75  Aligned_cols=105  Identities=22%  Similarity=0.290  Sum_probs=73.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc-c------cc---------------------c-----------cC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-L------QR---------------------L-----------FT  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-~------~~---------------------~-----------~~  112 (352)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.+.. .      ..                     .           .+
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTD   84 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCCC
Confidence            47999999999999999999999999999875310 0      00                     0           00


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCc
Q 018652          113 ----------------------------------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  146 (352)
Q Consensus       113 ----------------------------------------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~  146 (352)
                                                                    ..+...+.+.+++.|++++.+++++++..+ +++
T Consensus        85 ~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~  163 (466)
T PRK08274         85 EALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELD-DGR  163 (466)
T ss_pred             HHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCe
Confidence                                                          112334455567789999999999999754 566


Q ss_pred             EEEEEcC--CC--CEEEcCEEEEccCC-CCCchhhh
Q 018652          147 VAAVKLE--DG--STIDADTIVIGIGA-KPTVSPFE  177 (352)
Q Consensus       147 ~~~v~~~--~g--~~i~~D~vi~a~G~-~p~~~~~~  177 (352)
                      +..+...  ++  ..+.++.||+|+|. ..|.++++
T Consensus       164 v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~  199 (466)
T PRK08274        164 FVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR  199 (466)
T ss_pred             EEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence            6666552  33  36889999999984 34434443

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.48  E-value=0.0015  Score=64.97  Aligned_cols=99  Identities=23%  Similarity=0.319  Sum_probs=71.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc---------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------------------------  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~---------------------------------------------  106 (352)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++....                                             
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~   96 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV   96 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            46999999999999999999999999999865110                                             


Q ss_pred             ----------------cc------------------cc-------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC
Q 018652          107 ----------------LQ------------------RL-------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  145 (352)
Q Consensus       107 ----------------~~------------------~~-------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~  145 (352)
                                      +.                  +.       .+..+...+.+.+++.||+++.++.+.++..++++
T Consensus        97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g  176 (541)
T PRK07804         97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG  176 (541)
T ss_pred             HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence                            00                  00       12234556666777788999999999998755445


Q ss_pred             cEEEEEcC-------CC-CEEEcCEEEEccCCC
Q 018652          146 RVAAVKLE-------DG-STIDADTIVIGIGAK  170 (352)
Q Consensus       146 ~~~~v~~~-------~g-~~i~~D~vi~a~G~~  170 (352)
                      ++..+...       ++ ..+.++.||+|+|..
T Consensus       177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~  209 (541)
T PRK07804        177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL  209 (541)
T ss_pred             eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence            66665442       23 368899999999863

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.47  E-value=0.0019  Score=62.61  Aligned_cols=101  Identities=20%  Similarity=0.284  Sum_probs=66.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-----------------c----------------cc------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------Q----------------RL------  110 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-----------------~----------------~~------  110 (352)
                      ..-+|+|||||+.|+-+|..|++.|.+|.++++.....                 +                ..      
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~  117 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG  117 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence            34589999999999999999999999999998763210                 0                00      


Q ss_pred             -----------cC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC-CcEEEEEcCC-------C--CEEEcCEEEEccC
Q 018652          111 -----------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLED-------G--STIDADTIVIGIG  168 (352)
Q Consensus       111 -----------~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~-~~~~~v~~~~-------g--~~i~~D~vi~a~G  168 (352)
                                 ++ ..+.+.+.+...+.|++++.+ .+++++...+ +....+.+.+       |  .++.+|.||-|.|
T Consensus       118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG  196 (450)
T PLN00093        118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG  196 (450)
T ss_pred             ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence                       00 012234555567789999765 4667753211 1112343321       3  4799999999999


Q ss_pred             CCC
Q 018652          169 AKP  171 (352)
Q Consensus       169 ~~p  171 (352)
                      ...
T Consensus       197 ~~S  199 (450)
T PLN00093        197 ANS  199 (450)
T ss_pred             cch
Confidence            765

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.46  E-value=0.0016  Score=63.91  Aligned_cols=97  Identities=19%  Similarity=0.307  Sum_probs=63.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC--------cccc--------------------------cc--c--CH-
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--------HLLQ--------------------------RL--F--TP-  113 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~--------~~~~--------------------------~~--~--~~-  113 (352)
                      .++|||+|+.|+.+|..+++.|.+|.++++..        .+-.                          ..  +  .. 
T Consensus         4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~   83 (484)
T TIGR01438         4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVEET   83 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccCCC
Confidence            68999999999999999999999999999520        0000                          00  0  00 


Q ss_pred             -----------------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCch
Q 018652          114 -----------------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       114 -----------------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  174 (352)
                                       .+.+.....+++.||+++.+.  -++.   +.+...|...+|  +++++|.+|+|||.+|...
T Consensus        84 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~--a~f~---~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p  158 (484)
T TIGR01438        84 VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY--AEFV---DKHRIKATNKKGKEKIYSAERFLIATGERPRYP  158 (484)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE--EEEc---CCCEEEEeccCCCceEEEeCEEEEecCCCCCCC
Confidence                             012233456777889998764  2333   112223443344  3699999999999998744

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.45  E-value=0.0018  Score=63.20  Aligned_cols=97  Identities=29%  Similarity=0.401  Sum_probs=67.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc---------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------------------------  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~---------------------------------------------  106 (352)
                      ..|+|||+|..|+-+|..+++.|.+|.|+++....                                             
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            46999999999999999999999999998864110                                             


Q ss_pred             ---------------c-----------cc------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652          107 ---------------L-----------QR------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  154 (352)
Q Consensus       107 ---------------~-----------~~------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~  154 (352)
                                     +           ++      ..+..+.+.+.+.+++.|++++.+ .++.+.. +++.+..+.. +
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~  158 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D  158 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence                           0           00      001234445555666778888765 5666654 3456656655 4


Q ss_pred             CCEEEcCEEEEccCCCC
Q 018652          155 GSTIDADTIVIGIGAKP  171 (352)
Q Consensus       155 g~~i~~D~vi~a~G~~p  171 (352)
                      ++.+.++.||+|||...
T Consensus       159 g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        159 GELLKFDATVIATGGFS  175 (466)
T ss_pred             CEEEEeCeEEECCCcCc
Confidence            56799999999999754

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.45  E-value=0.00056  Score=60.08  Aligned_cols=100  Identities=17%  Similarity=0.262  Sum_probs=68.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------------  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-------------------------------------------  109 (352)
                      +++|||+|..|+-+|..|+..|.+|||++++.-+..|                                           
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            5899999999999999999999999999987211000                                           


Q ss_pred             ------------------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCC
Q 018652          110 ------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGA  169 (352)
Q Consensus       110 ------------------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~  169 (352)
                                        ... +.++ .+.+. -....+++++++|+++...  +....+..++|. ...+|.|+++++.
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgms-alak~-LAtdL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMS-ALAKF-LATDLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchH-HHHHH-Hhccchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCC
Confidence                              011 1111 22222 2235778888889998765  334577776664 6789999999886


Q ss_pred             CCCchhh
Q 018652          170 KPTVSPF  176 (352)
Q Consensus       170 ~p~~~~~  176 (352)
                      -....+|
T Consensus       159 PQ~~~LL  165 (331)
T COG3380         159 PQTATLL  165 (331)
T ss_pred             Ccchhhc
Confidence            5444444

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.45  E-value=0.0024  Score=61.29  Aligned_cols=56  Identities=29%  Similarity=0.477  Sum_probs=38.9

Q ss_pred             HHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhc
Q 018652          121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV  179 (352)
Q Consensus       121 ~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~  179 (352)
                      +.+++.|++++.++.|++++.. ++.+..+++.++ ++.+|.||+|+|.-.. .++...
T Consensus       209 ~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~  264 (416)
T PRK00711        209 AMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST-ALLKPL  264 (416)
T ss_pred             HHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHh
Confidence            3346678999999999998754 344445666554 6999999999997543 344433

>PRK07121 hypothetical protein; Validated

Probab=97.42  E-value=0.0024  Score=62.83  Aligned_cols=61  Identities=21%  Similarity=0.261  Sum_probs=42.0

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-CC--EEEc-CEEEEccCCC-CCchhhh
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK-PTVSPFE  177 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~-D~vi~a~G~~-p~~~~~~  177 (352)
                      ..+.+.+++.|+++++++.++++..++++++..|...+ ++  .+.+ +.||+|+|-- .|.++++
T Consensus       181 ~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~  246 (492)
T PRK07121        181 DPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA  246 (492)
T ss_pred             HHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence            34555567788999999999998765456776665533 33  5778 9999999954 3434443

>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A

Probab=97.38  E-value=0.00099  Score=51.20  Aligned_cols=32  Identities=13%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             cEEEEEEECCEEEEEEeecCCHHHhhHHHHHHh
Q 018652          287 KIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  319 (352)
Q Consensus       287 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~  319 (352)
                      +-++||+++++|+|+++ .|--..+...|++|+
T Consensus       100 kGVVfYLrd~~VvGill-WNvf~~~~~AR~ii~  131 (133)
T PF14721_consen  100 KGVVFYLRDDRVVGILL-WNVFNRMPIARKIIA  131 (133)
T ss_dssp             EEEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred             ceEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence            56789999999999997 677778888888874

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.37  E-value=0.0024  Score=61.74  Aligned_cols=63  Identities=13%  Similarity=0.180  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhCCcEEEcCCeEEEEEecC-CCcEEEEEcCC-CCEEEcCEEEEccC-CCCCchhhhh
Q 018652          116 AQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLED-GSTIDADTIVIGIG-AKPTVSPFER  178 (352)
Q Consensus       116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~-~~~~~~v~~~~-g~~i~~D~vi~a~G-~~p~~~~~~~  178 (352)
                      .+.+.+.+++.|+++++++.++++..++ ++.+..+...+ +..+.++.||+|+| +..|.+++.+
T Consensus       126 ~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       126 TNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            3455556677899999999999987543 45666665443 35789999999999 4555555544

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07846 mycothione reductase; Reviewed

Probab=97.36  E-value=0.00082  Score=65.32  Aligned_cols=94  Identities=18%  Similarity=0.332  Sum_probs=58.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc----ccccc---------------------cC----------HHHH-
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----LLQRL---------------------FT----------PSLA-  116 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~----~~~~~---------------------~~----------~~~~-  116 (352)
                      .++|||+|+.|..+|..  ..|.+|.+|++..-    +...+                     ++          +.+. 
T Consensus         3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~   80 (451)
T PRK07846          3 DLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIVS   80 (451)
T ss_pred             CEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHHH
Confidence            58999999999877654  46999999997510    00000                     00          0011 


Q ss_pred             ------HHH-----HHH-HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh
Q 018652          117 ------QRY-----EQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  175 (352)
Q Consensus       117 ------~~l-----~~~-l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  175 (352)
                            +.+     ... +++.||+++.+.. .-++   . +  .|++.+|+++.+|.+|+|||.+|..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~---~-~--~V~v~~g~~~~~d~lViATGs~p~~p~  144 (451)
T PRK07846         81 RVFGRIDPIAAGGEEYRGRDTPNIDVYRGHA-RFIG---P-K--TLRTGDGEEITADQVVIAAGSRPVIPP  144 (451)
T ss_pred             HHHHHHHHHhccchhhhhhhhCCcEEEEEEE-EEec---C-C--EEEECCCCEEEeCEEEEcCCCCCCCCC
Confidence                  111     112 4556788877642 2222   1 1  466677888999999999999997543

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.36  E-value=0.0036  Score=61.68  Aligned_cols=58  Identities=19%  Similarity=0.393  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEec-CC--CcEEEEEcC-CCC-----EEEcCEEEEccCCCC
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAVKLE-DGS-----TIDADTIVIGIGAKP  171 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~-~~--~~~~~v~~~-~g~-----~i~~D~vi~a~G~~p  171 (352)
                      .+...+.+.++++||+|+++++|+++..+ ++  +.+..|... +|+     ..+.|.||+++|.-.
T Consensus       227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t  293 (576)
T PRK13977        227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT  293 (576)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence            44455667779999999999999999864 23  567777664 232     356999999999754

>PLN02985 squalene monooxygenase

Probab=97.35  E-value=0.0029  Score=62.40  Aligned_cols=33  Identities=27%  Similarity=0.278  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~   75 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERD   75 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence            457999999999999999999999999999976

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.00068  Score=61.53  Aligned_cols=102  Identities=26%  Similarity=0.384  Sum_probs=80.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC--Ccc-----------cccccCHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~--~~~-----------~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      ..-.|+|||||+.|...|-+.+++|.+.-++..+  ..+           .+..-+|.+...+++..+++.|.+....+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra  289 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA  289 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence            3457999999999999999999998776443211  111           123457889999999999999999988888


Q ss_pred             EEEEecC-CCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          137 KNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       137 ~~i~~~~-~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      +.+++.. .+....|++++|-.+++..+|++||.+=
T Consensus       290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW  325 (520)
T COG3634         290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGARW  325 (520)
T ss_pred             hcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence            8887632 3446689999999999999999999863

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.34  E-value=0.0031  Score=63.12  Aligned_cols=51  Identities=25%  Similarity=0.328  Sum_probs=37.3

Q ss_pred             HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCC
Q 018652          119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~  170 (352)
                      +.+.+++.||+++.++.++++..+ ++++..+..   .+|+  .+.++.||+|+|..
T Consensus       135 L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~  190 (566)
T TIGR01812       135 LYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY  190 (566)
T ss_pred             HHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence            344456678999999999998754 566655543   4564  58899999999964

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.34  E-value=0.00056  Score=64.65  Aligned_cols=71  Identities=20%  Similarity=0.397  Sum_probs=54.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc------cCHH------HHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPS------LAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~------~~~~------~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      .++++|||||..|++.|..|++.|.+|+++++++.+-.++      |+..      +...+.+.-..-+|++++.++|++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence            5789999999999999999999999999999998764432      2221      223334444456899999999999


Q ss_pred             EEe
Q 018652          139 LEA  141 (352)
Q Consensus       139 i~~  141 (352)
                      +..
T Consensus       204 v~G  206 (622)
T COG1148         204 VSG  206 (622)
T ss_pred             ecc
Confidence            864

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.33  E-value=0.0039  Score=59.05  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ...+|+|||||.+|+-+|..|++.|.+|+++++.
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~   36 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAG   36 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecC
Confidence            3568999999999999999999999999999966

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.31  E-value=0.0033  Score=57.05  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEe-cCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~-~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ..+.++..+++.|+.++.+..++.+.. ++++....|++.+|..+.++-+|+++|.=-+
T Consensus       155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~  213 (399)
T KOG2820|consen  155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN  213 (399)
T ss_pred             HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence            345677788999999999999888763 3345666899999999999999999996443

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.27  E-value=0.0032  Score=63.80  Aligned_cols=103  Identities=22%  Similarity=0.354  Sum_probs=70.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC-CCcEEEEecCCcccc----------------------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ----------------------------------------  108 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~~----------------------------------------  108 (352)
                      ...+|+|||+|+.|+.+|..|+++ |.+|+|+++.+....                                        
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~  110 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD  110 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence            345899999999999999999995 999999997621100                                        


Q ss_pred             -----------c--------------ccC-HHHHHHHHHHHHhCC--cEEEcCCeEEEEEecCCC-cEEEEEcC------
Q 018652          109 -----------R--------------LFT-PSLAQRYEQLYQQNG--VKFVKGASIKNLEAGSDG-RVAAVKLE------  153 (352)
Q Consensus       109 -----------~--------------~~~-~~~~~~l~~~l~~~g--V~~~~~~~v~~i~~~~~~-~~~~v~~~------  153 (352)
                                 +              .+. ..+.+.+.+.+.+.+  +++..++++++++.++++ ....+++.      
T Consensus       111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~  190 (634)
T PRK08294        111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH  190 (634)
T ss_pred             CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence                       0              000 023344556666665  578889999999754322 22244443      


Q ss_pred             CC--CEEEcCEEEEccCCCCC
Q 018652          154 DG--STIDADTIVIGIGAKPT  172 (352)
Q Consensus       154 ~g--~~i~~D~vi~a~G~~p~  172 (352)
                      +|  +++.+|+||-|-|.+..
T Consensus       191 ~g~~~tv~A~~lVGaDGa~S~  211 (634)
T PRK08294        191 EGEEETVRAKYVVGCDGARSR  211 (634)
T ss_pred             CCceEEEEeCEEEECCCCchH
Confidence            35  47999999999998764

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.25  E-value=0.0023  Score=61.77  Aligned_cols=99  Identities=28%  Similarity=0.418  Sum_probs=65.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------cc---c---------C--
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------RL---F---------T--  112 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------~~---~---------~--  112 (352)
                      .-.++|||+|+.|...|..++++|.+|.++++.+.+-.                        ..   +         +  
T Consensus         4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~   83 (454)
T COG1249           4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFE   83 (454)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHH
Confidence            34699999999999999999999999999988742200                        00   0         0  


Q ss_pred             ----------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          113 ----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       113 ----------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                                ......++.+++++||+++.+.  -++..   .+...|...+.++++++.+|+|||.+|...
T Consensus        84 ~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~--a~f~~---~~~v~V~~~~~~~~~a~~iiIATGS~p~~~  150 (454)
T COG1249          84 KLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE--ARFVD---PHTVEVTGEDKETITADNIIIATGSRPRIP  150 (454)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE--EEECC---CCEEEEcCCCceEEEeCEEEEcCCCCCcCC
Confidence                      0111223445566789988764  34431   222233322246899999999999999754

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.23  E-value=0.0033  Score=59.29  Aligned_cols=95  Identities=17%  Similarity=0.223  Sum_probs=68.5

Q ss_pred             HHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652           89 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  168 (352)
Q Consensus        89 ~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  168 (352)
                      ..+..+....++.-..+-+.....+.+.+.+.+.+++.|+++++++.|..++.. ++.+..+.+.+|.++++|.||+|+|
T Consensus       149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~G  227 (486)
T COG2509         149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPG  227 (486)
T ss_pred             HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccC
Confidence            344455555555433322333456788889999999999999999999999854 4556788999999999999999999


Q ss_pred             CCCCch---hhhhcCCccc
Q 018652          169 AKPTVS---PFERVGLNSS  184 (352)
Q Consensus       169 ~~p~~~---~~~~~gl~~~  184 (352)
                      +.....   +.+..|+...
T Consensus       228 rsg~dw~~~l~~K~Gv~~~  246 (486)
T COG2509         228 RSGRDWFEMLHKKLGVKMR  246 (486)
T ss_pred             cchHHHHHHHHHhcCcccc
Confidence            988632   2344455443

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.23  E-value=0.0048  Score=62.11  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCCC
Q 018652          116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  171 (352)
Q Consensus       116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p  171 (352)
                      ...+.+.+++.||+++.++.++++..++++++..+..   .+|+  .+.++.||+|||--.
T Consensus       152 ~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  212 (598)
T PRK09078        152 LHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG  212 (598)
T ss_pred             HHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence            3445555667889999999999987554467777653   4664  678999999998643

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.23  E-value=0.0048  Score=62.33  Aligned_cols=56  Identities=23%  Similarity=0.217  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~  170 (352)
                      +...+.+..++.||+++.++.++++..++++++..+..   .+|+  .+.++.||+|||--
T Consensus       168 i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  228 (617)
T PTZ00139        168 MLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY  228 (617)
T ss_pred             HHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence            33445555666789999999888876534677776653   4564  57899999999754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.22  E-value=0.0042  Score=62.54  Aligned_cols=44  Identities=18%  Similarity=0.265  Sum_probs=33.6

Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEcC---CCC--EEEcCEEEEccCCC
Q 018652          127 GVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       127 gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~  170 (352)
                      ||+++.++.++++..++++++..|...   +|+  .+.++.||+|||--
T Consensus       147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~  195 (603)
T TIGR01811       147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY  195 (603)
T ss_pred             CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            799999999998875545677777653   454  57899999999863

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08275 putative oxidoreductase; Provisional

Probab=97.22  E-value=0.0061  Score=60.88  Aligned_cols=57  Identities=21%  Similarity=0.291  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP  171 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p  171 (352)
                      +...+.+.+++.||+++.++.++++..++++++..+.   ..+|+  .+.++.||+|+|...
T Consensus       139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        139 IKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            3445556667789999999999998754356666554   34564  578999999999753

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.20  E-value=0.0013  Score=64.82  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=29.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      ..++|||+|+.|+.+|..++++|.+|.++++
T Consensus         6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            4799999999999999999999999999995

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.19  E-value=0.0046  Score=60.98  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -.|+|||||.+|+-+|..|+++|.+|.++++.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~   38 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD   38 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47999999999999999999999999999977

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.18  E-value=0.0013  Score=62.05  Aligned_cols=33  Identities=39%  Similarity=0.489  Sum_probs=30.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ...|+|||||..|||.|...++.|.+.++++.+
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            357999999999999999999999999998866

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.16  E-value=0.006  Score=58.02  Aligned_cols=89  Identities=20%  Similarity=0.461  Sum_probs=60.2

Q ss_pred             HHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEc---CCC--CEEEcCEEEEccCCCCCchhhhhcCCcc--cCCcE
Q 018652          117 QRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKL---EDG--STIDADTIVIGIGAKPTVSPFERVGLNS--SVGGI  188 (352)
Q Consensus       117 ~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~--~~g~i  188 (352)
                      +.+.+.+.+. |++++++++|+.|++.+++.- .|..   .+|  .++.+++|+++.|--.- .+++.+|++.  .-|+.
T Consensus       185 r~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL-~LLqksgi~e~~gyggf  262 (488)
T PF06039_consen  185 RQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGAL-PLLQKSGIPEGKGYGGF  262 (488)
T ss_pred             HHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhH-HHHHHcCChhhcccCCC
Confidence            3344444555 999999999999998877742 2332   233  47999999999998753 6888888853  34555


Q ss_pred             EeC-CCCCCCCC--------CEEEeccc
Q 018652          189 QVD-GQFRTRMP--------GIFAIGDV  207 (352)
Q Consensus       189 ~vd-~~~~t~~~--------~Iya~GD~  207 (352)
                      +|. .++++..|        -||..-.+
T Consensus       263 PVsG~fl~~~n~~vv~~H~aKVYgka~v  290 (488)
T PF06039_consen  263 PVSGQFLRCKNPEVVAQHNAKVYGKASV  290 (488)
T ss_pred             cccceEEecCCHHHHHHhcceeeeeCCC
Confidence            554 56666544        36666554

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.15  E-value=0.0066  Score=60.97  Aligned_cols=56  Identities=20%  Similarity=0.196  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCCC
Q 018652          116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  171 (352)
Q Consensus       116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p  171 (352)
                      ...+.+...+.||+++.++.++++..++++++..+..   .+|+  .+.++.||+|||--.
T Consensus       146 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  206 (588)
T PRK08958        146 LHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG  206 (588)
T ss_pred             HHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            3444455566789999999999887544677777654   3564  578999999998643

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.14  E-value=0.0061  Score=58.10  Aligned_cols=101  Identities=24%  Similarity=0.337  Sum_probs=62.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC---CcEEEEecCCccc-------------------------c---------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLL-------------------------Q---------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g---~~Vtvv~~~~~~~-------------------------~---------------  108 (352)
                      .+|+|||+|++|+.+|..|.+.-   ..|+++++.+++.                         +               
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            57999999999999999998752   2388888773320                         0               


Q ss_pred             ------------------cccCHHHHHHHHHHHHhCC---cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652          109 ------------------RLFTPSLAQRYEQLYQQNG---VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  167 (352)
Q Consensus       109 ------------------~~~~~~~~~~l~~~l~~~g---V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  167 (352)
                                        +.++.-+.+.+...+++.-   +.++. .+.+.+.+.+++....+...+|+...||.+|++|
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                              0011111222222233332   44432 3344444443455556778899999999999999


Q ss_pred             CCCCCc
Q 018652          168 GAKPTV  173 (352)
Q Consensus       168 G~~p~~  173 (352)
                      |..+..
T Consensus       161 gh~~~~  166 (474)
T COG4529         161 GHSAPP  166 (474)
T ss_pred             cCCCCC
Confidence            987654

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.13  E-value=0.0067  Score=61.22  Aligned_cols=36  Identities=31%  Similarity=0.381  Sum_probs=32.7

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+..+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            355789999999999999999999999999999864

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.12  E-value=0.006  Score=60.75  Aligned_cols=55  Identities=13%  Similarity=0.215  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCC
Q 018652          116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~  170 (352)
                      ...+.+.+++.||++++++.++++..++++++..+..   .+|+  .+.++.||+|||--
T Consensus       137 ~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        137 MMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            3445555666789999999999987544444655542   4564  58899999999974

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.10  E-value=0.0062  Score=60.94  Aligned_cols=53  Identities=11%  Similarity=0.097  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCC--EEEcCEEEEccCC
Q 018652          116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA  169 (352)
Q Consensus       116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~  169 (352)
                      ...+.+.+.+.||+++.++.++++..+ ++++..+...   +|+  .+.++.||+|||-
T Consensus       139 ~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        139 LHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             HHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            334555556678999999999998754 6777776543   333  5789999999995

>TIGR00551 nadB L-aspartate oxidase

Probab=97.09  E-value=0.0055  Score=60.18  Aligned_cols=57  Identities=19%  Similarity=0.297  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCC-C--CEEEcCEEEEccCCCC
Q 018652          114 SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKP  171 (352)
Q Consensus       114 ~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g--~~i~~D~vi~a~G~~p  171 (352)
                      .+...+.+.+++ .||+++.++.++++..+ ++.+..+...+ +  ..+.++.||+|+|...
T Consensus       129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       129 EVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            344555666666 58999999999998753 45555554433 3  3689999999999754

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.09  E-value=0.00088  Score=46.78  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=29.3

Q ss_pred             EECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652           76 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  108 (352)
Q Consensus        76 VvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~  108 (352)
                      |||+|..|+.+|..|++.|.+|+|+++.+++-.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence            799999999999999999999999999886643

...

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.08  E-value=0.0076  Score=61.13  Aligned_cols=51  Identities=22%  Similarity=0.326  Sum_probs=37.8

Q ss_pred             HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCC--EEEcCEEEEccCCC
Q 018652          119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~  170 (352)
                      +.+.+++.||+++.++.++++..+ ++++..|...   +|+  .+.++.||+|||--
T Consensus       176 L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~  231 (640)
T PRK07573        176 LSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGY  231 (640)
T ss_pred             HHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence            334556778999999999998753 5677766653   454  58899999999973

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.07  E-value=0.0037  Score=61.30  Aligned_cols=31  Identities=29%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhC-CCcEEEEec
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFP  102 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~  102 (352)
                      -.++|||+|+.|..+|..++++ |.+|.+|++
T Consensus         4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~   35 (486)
T TIGR01423         4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV   35 (486)
T ss_pred             cCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence            4699999999999999999997 899999996

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.07  E-value=0.0096  Score=60.07  Aligned_cols=32  Identities=28%  Similarity=0.584  Sum_probs=29.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~  103 (352)
                      -.|+|||+|..|+-+|..+++.  |.+|.|+++.
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~   45 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA   45 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3699999999999999999998  9999999865

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.04  E-value=0.0094  Score=60.36  Aligned_cols=55  Identities=20%  Similarity=0.243  Sum_probs=39.0

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCCC
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP  171 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p  171 (352)
                      ..+.+...+.||+++.++.+.++..++++++..+..   .+|+  .+.++.||+|||--.
T Consensus       191 ~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g  250 (635)
T PLN00128        191 HTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG  250 (635)
T ss_pred             HHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence            444555566789999998888876444567766654   3564  578999999998643

>TIGR03452 mycothione_red mycothione reductase

Probab=97.03  E-value=0.0025  Score=61.93  Aligned_cols=30  Identities=10%  Similarity=-0.011  Sum_probs=24.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -.++|||+|+.|..+|.  +..|.+|.+|+++
T Consensus         3 yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~   32 (452)
T TIGR03452         3 YDLIIIGTGSGNSIPDP--RFADKRIAIVEKG   32 (452)
T ss_pred             cCEEEECCCHHHHHHHH--HHCCCeEEEEeCC
Confidence            36899999999988754  4579999999975

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.03  E-value=0.008  Score=58.08  Aligned_cols=55  Identities=9%  Similarity=0.234  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEE-cCCCC--EEEcCEEEEccCCC
Q 018652          115 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       115 ~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~-~~~g~--~i~~D~vi~a~G~~  170 (352)
                      +.+.+.+.+++ .||++++++.++++..+ ++++..+. ..+++  .+.++.||+|+|--
T Consensus       130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        130 VEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI  188 (433)
T ss_pred             HHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence            44455555554 58999999999998643 45555543 33454  58899999999964

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.01  E-value=0.0021  Score=66.66  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.3

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEecCCc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH  105 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~  105 (352)
                      +|+|||||+.|+-+|..|++.  |.+|+|+++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            699999999999999999998  899999998754

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.00  E-value=0.009  Score=58.99  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ...|+|||||.+|+-+|..|+++|.+|.|+++.
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~   38 (508)
T PRK12266          6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD   38 (508)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            357999999999999999999999999999976

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.00  E-value=0.0032  Score=61.13  Aligned_cols=82  Identities=22%  Similarity=0.271  Sum_probs=59.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+++++|+|+|.+|+.+|..|++.|.+|+++++...       +.+.+. .+.+.+.|++++.+....            
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~~~~-~~~l~~~~~~~~~~~~~~------------   63 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQLKEA-LEELGELGIELVLGEYPE------------   63 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHHHHH-HHHHHhcCCEEEeCCcch------------
Confidence            478999999999999999999999999999987541       122222 234567788876543221            


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                           ...-.+|.||.++|..|+.+++
T Consensus        64 -----~~~~~~d~vv~~~g~~~~~~~~   85 (450)
T PRK14106         64 -----EFLEGVDLVVVSPGVPLDSPPV   85 (450)
T ss_pred             -----hHhhcCCEEEECCCCCCCCHHH
Confidence                 0112589999999998887754

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.98  E-value=0.011  Score=59.24  Aligned_cols=56  Identities=16%  Similarity=0.262  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP  171 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p  171 (352)
                      +...+.+.+++.||+++.++.++++..+ ++++..+.   ..+|+  .+.++.||+|+|.-.
T Consensus       137 i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        137 ILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             HHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            4445666667789999999999998643 56655543   34564  588999999999753

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.96  E-value=0.014  Score=58.83  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -.|+|||+|..|+-.|..+++.|.+|+|++..
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            47999999999999999999999999999874

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.94  E-value=0.012  Score=59.51  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~   40 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS   40 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence            36999999999999999999999999999865

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.93  E-value=0.013  Score=58.86  Aligned_cols=59  Identities=19%  Similarity=0.309  Sum_probs=41.4

Q ss_pred             HHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCC--EEEcC-EEEEccC-CCCCchhhhh
Q 018652          120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER  178 (352)
Q Consensus       120 ~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~~~~  178 (352)
                      .+..++.|+++++++.++++..++++++..|... +++  ++.+. .||+|+| +..|.+++++
T Consensus       220 ~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~  283 (584)
T PRK12835        220 RLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE  283 (584)
T ss_pred             HHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence            3445677899999999999987666777776553 343  46786 5888887 4556566554

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.90  E-value=0.0034  Score=58.56  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+|+|||||..|+-.|..|.++|.+|.|++.+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e   35 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE   35 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence            3579999999999999999999999999999763

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.87  E-value=0.019  Score=57.69  Aligned_cols=57  Identities=21%  Similarity=0.252  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCC---CcEEEEEc---CCCC--EEEcCEEEEccCCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTIVIGIGAKP  171 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~---~~~~~v~~---~~g~--~i~~D~vi~a~G~~p  171 (352)
                      +...+.+.+++.||+++.++.++++..+++   +++.++..   .+|+  .+.++.||+|||...
T Consensus       142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            445566667788999999999999865432   66666643   4554  578999999999754

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=96.84  E-value=0.026  Score=55.34  Aligned_cols=62  Identities=21%  Similarity=0.302  Sum_probs=42.1

Q ss_pred             HHHHHH-hCCcEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCCCchhhhhcCCc
Q 018652          119 YEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN  182 (352)
Q Consensus       119 l~~~l~-~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  182 (352)
                      +.+.+. ..|+++++++.|+.++..+++.. .+.   +.+++  ++.+|.||+|.|.-.. .+++.+|+.
T Consensus       190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~  257 (497)
T PRK13339        190 LAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP  257 (497)
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence            333343 35899999999999986534332 233   34453  6899999999998764 567766654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.82  E-value=0.015  Score=58.88  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .++|||+|..|..+|..++++|.+|.+|++.
T Consensus       118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            6999999999999999999999999999853

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.81  E-value=0.019  Score=57.70  Aligned_cols=32  Identities=31%  Similarity=0.494  Sum_probs=28.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC---CcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g---~~Vtvv~~~  103 (352)
                      -.|+|||+|..|+-+|..+++.|   .+|+|+++.
T Consensus         6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~   40 (577)
T PRK06069          6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT   40 (577)
T ss_pred             cCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence            35999999999999999999998   799998865

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.79  E-value=0.016  Score=58.31  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..|+|||+|..|+-.|..+++.|.+|.|+++.
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~   35 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV   35 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence            46999999999999999999999999999843

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=96.73  E-value=0.00074  Score=60.63  Aligned_cols=104  Identities=25%  Similarity=0.348  Sum_probs=64.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC-C-CcEEEEecCCcc-cc---cccCHHHHHHHHHH------HHhCCcEEEcCCeEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENHL-LQ---RLFTPSLAQRYEQL------YQQNGVKFVKGASIK  137 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~-g-~~Vtvv~~~~~~-~~---~~~~~~~~~~l~~~------l~~~gV~~~~~~~v~  137 (352)
                      .--+++|||||.-|+.+|..+.++ + -+|-++++.+.- ..   ...+..+. .+...      +--.|.+.+. ..|.
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~-~l~~srr~~a~liP~~a~wi~-ekv~  115 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLK-SLDSSRRKQASLIPKGATWIK-EKVK  115 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchh-hhhhccCcccccccCCcHHHH-HHHH
Confidence            456799999999999999998764 3 367888876532 11   11121111 11110      1111222222 3456


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhc
Q 018652          138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV  179 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~  179 (352)
                      +++++++    .|.+.+|++|.+|.+|+|.|..-+.+.++.+
T Consensus       116 ~f~P~~N----~v~t~gg~eIsYdylviA~Giql~y~~IkGl  153 (446)
T KOG3851|consen  116 EFNPDKN----TVVTRGGEEISYDYLVIAMGIQLDYGKIKGL  153 (446)
T ss_pred             hcCCCcC----eEEccCCcEEeeeeEeeeeeceeccchhcCh
Confidence            6665432    6788999999999999999998876655443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.72  E-value=0.0036  Score=53.92  Aligned_cols=107  Identities=18%  Similarity=0.255  Sum_probs=65.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+++++|||||.+|..-+..|.+.|.+|+|+.+..       .++    +.+..++.+++++.+.    +          
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~-------~~~----l~~l~~~~~i~~~~~~----~----------   62 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL-------ESE----LTLLAEQGGITWLARC----F----------   62 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC-------CHH----HHHHHHcCCEEEEeCC----C----------
Confidence            57899999999999999999999999999997642       222    3333333445554321    0          


Q ss_pred             EEcCCCCEEEcCEEEEccCCC-CCchhhhhcCCcccCCcEEe---CC-CCCC-CCCCEEEecccc
Q 018652          150 VKLEDGSTIDADTIVIGIGAK-PTVSPFERVGLNSSVGGIQV---DG-QFRT-RMPGIFAIGDVA  208 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~~g~i~v---d~-~~~t-~~~~Iya~GD~a  208 (352)
                         ..+..-.+++||.|||.. .|..+...+    ...++.|   |+ .+.+ ..|.++--||..
T Consensus        63 ---~~~dl~~~~lVi~at~d~~ln~~i~~~a----~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~  120 (205)
T TIGR01470        63 ---DADILEGAFLVIAATDDEELNRRVAHAA----RARGVPVNVVDDPELCSFIFPSIVDRSPVV  120 (205)
T ss_pred             ---CHHHhCCcEEEEECCCCHHHHHHHHHHH----HHcCCEEEECCCcccCeEEEeeEEEcCCEE
Confidence               011123489999999986 554444332    1123444   22 2211 346666667653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.66  E-value=0.027  Score=56.62  Aligned_cols=60  Identities=22%  Similarity=0.339  Sum_probs=41.8

Q ss_pred             HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-CC--EEEc-CEEEEccCCC-CCchhhhh
Q 018652          118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK-PTVSPFER  178 (352)
Q Consensus       118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~-D~vi~a~G~~-p~~~~~~~  178 (352)
                      .+.+.+++.|++++.++.++++..+ ++++..|...+ |+  .+.+ +.||+|+|.- .|.+++++
T Consensus       226 aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~  290 (578)
T PRK12843        226 RLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE  290 (578)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence            3556667789999999999998753 57777776543 33  4675 7899999864 44455544

>PRK07395 L-aspartate oxidase; Provisional

Probab=96.64  E-value=0.013  Score=58.33  Aligned_cols=32  Identities=28%  Similarity=0.332  Sum_probs=27.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .-.|+|||+|..|+-+|..+. .|.+|.|+++.
T Consensus         9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~   40 (553)
T PRK07395          9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKD   40 (553)
T ss_pred             cCCEEEECccHHHHHHHHHhh-cCCCEEEEEcc
Confidence            346999999999999999986 48999998865

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.61  E-value=0.003  Score=60.13  Aligned_cols=35  Identities=23%  Similarity=0.173  Sum_probs=31.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ++|+|||||.+|+++|..|+++|.+|+|+++.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            57999999999999999999999999999976544

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.59  E-value=0.002  Score=56.38  Aligned_cols=92  Identities=18%  Similarity=0.277  Sum_probs=58.3

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcC--------C---eEEEE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG--------A---SIKNL  139 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~--------~---~v~~i  139 (352)
                      +.+|||||..|+.+|..|+.+  ..+|.+++.++-+..-    .--..+.+.+++..|+=..-        +   .|..+
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksv----tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~   76 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV----TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTW   76 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH----hhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhh
Confidence            368999999999999999876  4577787766533221    11122333333333321100        0   02223


Q ss_pred             EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      +    .....+.+.+|.++.++.+++|+|.+|.
T Consensus        77 ~----s~ehci~t~~g~~~ky~kKOG~tg~kPk  105 (334)
T KOG2755|consen   77 D----SSEHCIHTQNGEKLKYFKLCLCTGYKPK  105 (334)
T ss_pred             c----cccceEEecCCceeeEEEEEEecCCCcc
Confidence            2    1223788999999999999999999996

>PRK08071 L-aspartate oxidase; Provisional

Probab=96.58  E-value=0.018  Score=56.91  Aligned_cols=31  Identities=23%  Similarity=0.432  Sum_probs=27.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..|+|||+|..|+-.|..+++ |.+|.++++.
T Consensus         4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~   34 (510)
T PRK08071          4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKK   34 (510)
T ss_pred             cCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence            469999999999999999876 8899998865

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.57  E-value=0.018  Score=52.09  Aligned_cols=52  Identities=21%  Similarity=0.343  Sum_probs=37.9

Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEcCC--CC--EEEcCEEEEccCCCCC--chhhhhc
Q 018652          127 GVKFVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIVIGIGAKPT--VSPFERV  179 (352)
Q Consensus       127 gV~~~~~~~v~~i~~~~~~~~~~v~~~~--g~--~i~~D~vi~a~G~~p~--~~~~~~~  179 (352)
                      -+++.++++|+.|.+ .++++..|+..|  |+  .+.+|.||+|+|--..  .++|++.
T Consensus       159 ~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLKey  216 (477)
T KOG2404|consen  159 LVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLKEY  216 (477)
T ss_pred             HHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHHHh
Confidence            378899999999984 578888877643  43  5889999999986543  3455543

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.55  E-value=0.035  Score=56.56  Aligned_cols=50  Identities=16%  Similarity=0.116  Sum_probs=36.5

Q ss_pred             HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCC
Q 018652          119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGA  169 (352)
Q Consensus       119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~  169 (352)
                      +.+.+.+.||+++.++.+.++..+ ++++.++..   .+|+  .+.++.||+|||-
T Consensus       164 L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG  218 (657)
T PRK08626        164 VDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATGG  218 (657)
T ss_pred             HHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence            334556788999999999998753 566655543   4565  4679999999994

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.54  E-value=0.0038  Score=62.33  Aligned_cols=107  Identities=20%  Similarity=0.213  Sum_probs=76.8

Q ss_pred             CCCeEEEECCChHHHHHHHH-------HHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec
Q 018652           70 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  142 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~-------l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~  142 (352)
                      .++.++++|++.++++.+..       +.+.+.+|+++........ .++..+...+.+.+++.|+++++++.++++..+
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~  237 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE  237 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence            35568899999999998865       5666777777554433332 356778888889999999999999999999854


Q ss_pred             CCCcEEEEEcC-CCC--EEEcC-EEEEccC-CCCCchhhhh
Q 018652          143 SDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER  178 (352)
Q Consensus       143 ~~~~~~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~~~~  178 (352)
                       ++++..|... +++  .+.++ .||+|+| +.+|.++++.
T Consensus       238 -~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        238 -DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             -CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence             5666666553 443  47785 6888665 6676666554

>PLN02815 L-aspartate oxidase

Probab=96.54  E-value=0.022  Score=57.28  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -.|+|||+|..|+-.|..+++.| +|.|+++.
T Consensus        30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~   60 (594)
T PLN02815         30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKD   60 (594)
T ss_pred             cCEEEECccHHHHHHHHHHhhCC-CEEEEECC
Confidence            47999999999999999999999 89998865

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=96.52  E-value=0.0063  Score=46.81  Aligned_cols=56  Identities=14%  Similarity=0.184  Sum_probs=44.3

Q ss_pred             EEEEEEE--CCEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh--hhhcCCCchHHHHHHHH
Q 018652          288 IATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK--AKLQQASSVEEALEIAR  343 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~e~~~~~~  343 (352)
                      +.++.++  +++|+|+++++.++.++.... .+|+++.+++.  ..+..+|+++|++..||
T Consensus        50 ~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~  110 (110)
T PF02852_consen   50 FVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA  110 (110)
T ss_dssp             EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred             eeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence            4555554  589999999888888877554 56799999887  33799999999999886

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.52  E-value=0.037  Score=55.60  Aligned_cols=54  Identities=31%  Similarity=0.452  Sum_probs=39.4

Q ss_pred             HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC--CCC-EEEc-CEEEEccCCCCC
Q 018652          118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS-TIDA-DTIVIGIGAKPT  172 (352)
Q Consensus       118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--~g~-~i~~-D~vi~a~G~~p~  172 (352)
                      .+.+.+++.|++++.++.++++..+ ++++..|...  ++. ++.+ +.||+|+|.-.+
T Consensus       222 ~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        222 RLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            4455667889999999999998754 5666655442  333 5788 999999987554

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.48  E-value=0.027  Score=55.03  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..-.++|||||..|+-+|..++.+|.+|.++++.
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~   44 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKG   44 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecC
Confidence            4567999999999999999999999999999987

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.46  E-value=0.009  Score=53.14  Aligned_cols=34  Identities=41%  Similarity=0.564  Sum_probs=30.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC------CcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g------~~Vtvv~~~  103 (352)
                      ..++++|+|||.+|+-.|.+|++.+      ..||+++..
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~   48 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK   48 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence            4589999999999999999999987      689999866

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=96.43  E-value=0.0066  Score=60.88  Aligned_cols=104  Identities=20%  Similarity=0.287  Sum_probs=77.0

Q ss_pred             hcCCCeEEEECCCh--HHHHHHHHHHhCCCcEEEEecCCcccccc-------------cCHHHHHHHHHHHHhCCcEEEc
Q 018652           68 LEKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------FTPSLAQRYEQLYQQNGVKFVK  132 (352)
Q Consensus        68 ~~~~~~vvVvGgG~--~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-------------~~~~~~~~l~~~l~~~gV~~~~  132 (352)
                      ....+++.|+|++.  ++.+++..+...+.+++++.+..+++...             .+..+...+.+.+++.|++++.
T Consensus       154 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~  233 (574)
T PRK12842        154 RPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILT  233 (574)
T ss_pred             cCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEe
Confidence            34567888999998  89999999999998888766554444321             1235666778888899999999


Q ss_pred             CCeEEEEEecCCCcEEEEEcCC--CC-EEEcC-EEEEccCCCCC
Q 018652          133 GASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT  172 (352)
Q Consensus       133 ~~~v~~i~~~~~~~~~~v~~~~--g~-~i~~D-~vi~a~G~~p~  172 (352)
                      ++.++++..+ ++++..|...+  ++ .+.++ .||+|+|..++
T Consensus       234 ~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        234 GTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             CCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            9999999754 56666665533  33 47785 79999997764

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=96.41  E-value=0.021  Score=52.18  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=28.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      +..+|+|||+|.+|+.+|..|+++ .+||+++.+
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~   39 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEAD   39 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEecc
Confidence            457899999999999999999876 678887755

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.39  E-value=0.045  Score=55.00  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~  103 (352)
                      .|+|||+|..|+-+|..+++.  |.+|+|+++.
T Consensus         6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~   38 (582)
T PRK09231          6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKV   38 (582)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence            599999999999999999987  4789999875

>PRK07512 L-aspartate oxidase; Provisional

Probab=96.37  E-value=0.026  Score=55.78  Aligned_cols=55  Identities=22%  Similarity=0.378  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCC-CC--EEEcCEEEEccCCC
Q 018652          115 LAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDADTIVIGIGAK  170 (352)
Q Consensus       115 ~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~D~vi~a~G~~  170 (352)
                      +...+.+.+++. ||+++.++.++++..+ ++++..+...+ +.  .+.++.||+|+|--
T Consensus       138 l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~  196 (513)
T PRK07512        138 IMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGI  196 (513)
T ss_pred             HHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence            344444555554 7899888888887643 56666655432 32  58899999999874

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.36  E-value=0.052  Score=54.49  Aligned_cols=31  Identities=32%  Similarity=0.458  Sum_probs=27.4

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~  103 (352)
                      .|+|||+|..|+-+|..+++.  |.+|.|+++.
T Consensus         5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~   37 (580)
T TIGR01176         5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKV   37 (580)
T ss_pred             eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence            599999999999999999876  5799999875

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.32  E-value=0.076  Score=53.53  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=27.3

Q ss_pred             eEEEECCChHHHHHHHHHH----hCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAV----GWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~----~~g~~Vtvv~~~  103 (352)
                      .|+|||+|..|+-+|..++    +.|.+|.|+++.
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~   35 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA   35 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence            3899999999999999998    678999998864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=96.24  E-value=0.022  Score=52.69  Aligned_cols=34  Identities=26%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ....|+|||+|..|..+|..|.+.|.+|++++|.
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            3456999999999999999999999999999988

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.17  E-value=0.011  Score=48.04  Aligned_cols=84  Identities=13%  Similarity=0.219  Sum_probs=55.5

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC
Q 018652           74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  153 (352)
Q Consensus        74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~  153 (352)
                      |+|+|+|.+|+-+|..|.+.|.+|+++.+.+ .            + +.+++.|+.+.....-..+..       .....
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~------------~-~~~~~~g~~~~~~~~~~~~~~-------~~~~~   59 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-R------------L-EAIKEQGLTITGPDGDETVQP-------PIVIS   59 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-H------------H-HHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-c------------H-HhhhheeEEEEecccceeccc-------ccccC
Confidence            6899999999999999999999999998753 1            1 337778999887652111211       11122


Q ss_pred             CC--CEEEcCEEEEccCCCCCchhhhh
Q 018652          154 DG--STIDADTIVIGIGAKPTVSPFER  178 (352)
Q Consensus       154 ~g--~~i~~D~vi~a~G~~p~~~~~~~  178 (352)
                      ..  ..-++|.||+|+-.....+.++.
T Consensus        60 ~~~~~~~~~D~viv~vKa~~~~~~l~~   86 (151)
T PF02558_consen   60 APSADAGPYDLVIVAVKAYQLEQALQS   86 (151)
T ss_dssp             SHGHHHSTESEEEE-SSGGGHHHHHHH
T ss_pred             cchhccCCCcEEEEEecccchHHHHHH
Confidence            21  23569999999876554444443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.17  E-value=0.058  Score=58.65  Aligned_cols=31  Identities=32%  Similarity=0.508  Sum_probs=29.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .|+|||+|..|+-.|...++.|.+|.++++.
T Consensus       411 DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~  441 (1167)
T PTZ00306        411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKE  441 (1167)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEcc
Confidence            6999999999999999999999999999876

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.15  E-value=0.036  Score=52.72  Aligned_cols=96  Identities=23%  Similarity=0.418  Sum_probs=65.3

Q ss_pred             EEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccc--cccCHHHH---------HHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           74 VVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ--RLFTPSLA---------QRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        74 vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~--~~~~~~~~---------~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      ++|+|+|..|+..|..+++.  ..+++++...+....  ......+.         ........+.++++..++.+.+++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            47999999999999998885  467777665532211  00111110         011111146789999999999997


Q ss_pred             ecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          141 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       141 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ...  +  .+.+.+| ++.+|.+++++|.+|...
T Consensus        81 ~~~--~--~v~~~~g-~~~yd~LvlatGa~~~~~  109 (415)
T COG0446          81 PEN--K--VVLLDDG-EIEYDYLVLATGARPRPP  109 (415)
T ss_pred             CCC--C--EEEECCC-cccccEEEEcCCCcccCC
Confidence            532  2  5677788 899999999999999764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.15  E-value=0.032  Score=53.82  Aligned_cols=88  Identities=15%  Similarity=0.214  Sum_probs=54.8

Q ss_pred             HHHHHHhC--CCcEEEEecCCccc------cccc----C-H-HHHHH-HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652           86 VAAAAVGW--KLDTTIIFPENHLL------QRLF----T-P-SLAQR-YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  150 (352)
Q Consensus        86 ~A~~l~~~--g~~Vtvv~~~~~~~------~~~~----~-~-~~~~~-l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v  150 (352)
                      +|..|+++  ..+|+|+++++.+.      +...    . + +.... ..+.+++.|++++.++.|++++.. +..+ .+
T Consensus         2 aA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~-~~~v-~~   79 (427)
T TIGR03385         2 AASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDE-RQTV-VV   79 (427)
T ss_pred             HHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECC-CCEE-EE
Confidence            45667665  46799999887431      1110    1 1 11111 234458889999999999999753 2222 23


Q ss_pred             EcC-CCCEEE--cCEEEEccCCCCCchh
Q 018652          151 KLE-DGSTID--ADTIVIGIGAKPTVSP  175 (352)
Q Consensus       151 ~~~-~g~~i~--~D~vi~a~G~~p~~~~  175 (352)
                      ... +++++.  +|.+|+|||.+|+...
T Consensus        80 ~~~~~~~~~~~~yd~lIiATG~~p~~~~  107 (427)
T TIGR03385        80 RNNKTNETYEESYDYLILSPGASPIVPN  107 (427)
T ss_pred             EECCCCCEEecCCCEEEECCCCCCCCCC
Confidence            322 345677  9999999999987543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK09077 L-aspartate oxidase; Provisional

Probab=96.11  E-value=0.081  Score=52.66  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=27.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -.|+|||+|..|+-.|..+++. .+|.|+++.
T Consensus         9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~   39 (536)
T PRK09077          9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKG   39 (536)
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCEEEEecc
Confidence            3699999999999999999886 789998865

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.09  E-value=0.029  Score=54.72  Aligned_cols=89  Identities=19%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             HHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec
Q 018652           63 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  142 (352)
Q Consensus        63 ~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~  142 (352)
                      .+...+ .++++.|+|.|.+|+.+|..|.+.|.+|++.++.+...   .    . ...+.+++.|+.+..+...      
T Consensus         7 ~~~~~~-~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~----~-~~~~~l~~~gi~~~~~~~~------   71 (458)
T PRK01710          7 EFKKFI-KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---L----G-EVSNELKELGVKLVLGENY------   71 (458)
T ss_pred             HHhhhh-cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---c----h-HHHHHHHhCCCEEEeCCCC------
Confidence            333433 36899999999999999999999999999988764211   1    1 1123367788888754210      


Q ss_pred             CCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          143 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       143 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                       ..   .       .-.+|+||+++|..|+.+.+.
T Consensus        72 -~~---~-------~~~~dlVV~Spgi~~~~p~~~   95 (458)
T PRK01710         72 -LD---K-------LDGFDVIFKTPSMRIDSPELV   95 (458)
T ss_pred             -hH---H-------hccCCEEEECCCCCCCchHHH
Confidence             00   0       124899999999998766543

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.08  E-value=0.021  Score=55.56  Aligned_cols=85  Identities=16%  Similarity=0.153  Sum_probs=58.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  152 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~  152 (352)
                      +|.|+|.|.+|+.+|..|.++|.+|++.++.+...        .......|++.|++++.+.... .+        .+. 
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~--------~~~~~~~l~~~gi~~~~g~~~~-~~--------~~~-   63 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPE--------LLERQQELEQEGITVKLGKPLE-LE--------SFQ-   63 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchh--------hHHHHHHHHHcCCEEEECCccc-hh--------hhh-
Confidence            58999999999999999999999999988765321        1122344677899998764221 00        000 


Q ss_pred             CCCCEEEcCEEEEccCCCCCchhhh
Q 018652          153 EDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       153 ~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                       . ..-.+|.||.++|..|+.+++.
T Consensus        64 -~-~~~~~d~vv~s~gi~~~~~~~~   86 (459)
T PRK02705         64 -P-WLDQPDLVVVSPGIPWDHPTLV   86 (459)
T ss_pred             -H-HhhcCCEEEECCCCCCCCHHHH
Confidence             0 0134799999999998876543

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.06  E-value=0.009  Score=58.49  Aligned_cols=39  Identities=26%  Similarity=0.459  Sum_probs=34.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  108 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~  108 (352)
                      ..++|+|||+|.+|+.+|..|.+.|.+|+|++.++++-.
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            467899999999999999999999999999998876533

>PRK12839 hypothetical protein; Provisional

Probab=96.05  E-value=0.092  Score=52.66  Aligned_cols=59  Identities=24%  Similarity=0.371  Sum_probs=40.5

Q ss_pred             HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc--CCCC-EE-EcCEEEEccCCC-CCchhhh
Q 018652          119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS-TI-DADTIVIGIGAK-PTVSPFE  177 (352)
Q Consensus       119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~--~~g~-~i-~~D~vi~a~G~~-p~~~~~~  177 (352)
                      +.+..++.|++++.++.++++..++++++..|..  .+++ .+ .++.||+|+|-- -|.++++
T Consensus       220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~  283 (572)
T PRK12839        220 LLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK  283 (572)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence            4555677899999999999987555677777654  3444 23 458999999754 4444443

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=95.96  E-value=0.036  Score=53.09  Aligned_cols=30  Identities=20%  Similarity=0.411  Sum_probs=27.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .|+|||+|..|+-+|..|.+. .+|+|+++.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~   38 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKG   38 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCC
Confidence            699999999999999999987 899999877

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=95.94  E-value=0.1  Score=51.63  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=28.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .-.|+|||+| .|+-+|..+++.|.+|.|+++.
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~   38 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEAT   38 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecC
Confidence            3469999999 9999999999999999999855

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=95.86  E-value=0.069  Score=50.07  Aligned_cols=104  Identities=18%  Similarity=0.286  Sum_probs=75.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC------CCcEEEEecCCcc-------------------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHL-------------------------------------  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~------g~~Vtvv~~~~~~-------------------------------------  106 (352)
                      ..-.|+|||+|+.|+..|-.|.++      ..+|.+++....+                                     
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~  154 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK  154 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence            445799999999999999888654      2456666655110                                     


Q ss_pred             -----------ccc--cc---------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC----------
Q 018652          107 -----------LQR--LF---------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----------  154 (352)
Q Consensus       107 -----------~~~--~~---------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~----------  154 (352)
                                 .+.  .+         -..+..++-+..++.||+++++....++-.++++.+..|-+.|          
T Consensus       155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pK  234 (621)
T KOG2415|consen  155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPK  234 (621)
T ss_pred             eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCcc
Confidence                       000  00         1245677888889999999999999999888888888887654          


Q ss_pred             -----CCEEEcCEEEEccCCCCCc
Q 018652          155 -----GSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       155 -----g~~i~~D~vi~a~G~~p~~  173 (352)
                           |-++.+..-|.|-|.+...
T Consensus       235 d~FerGme~hak~TifAEGc~G~L  258 (621)
T KOG2415|consen  235 DTFERGMEFHAKVTIFAEGCHGSL  258 (621)
T ss_pred             ccccccceecceeEEEeccccchh
Confidence                 2367788899999987653

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.85  E-value=0.14  Score=51.12  Aligned_cols=32  Identities=41%  Similarity=0.383  Sum_probs=28.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus         7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~   38 (557)
T PRK12844          7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ   38 (557)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            46899999999999999999999999988865

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=95.83  E-value=0.013  Score=56.83  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=31.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~  106 (352)
                      ++|+|||||.+|+-+|..|++.|  .+|+|++.++++
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~   37 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRL   37 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence            47999999999999999999987  899999988665

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.79  E-value=0.021  Score=53.37  Aligned_cols=102  Identities=18%  Similarity=0.266  Sum_probs=57.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcccc-------------------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQ-------------------------------------------  108 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~-------------------------------------------  108 (352)
                      .++.||.|+..+.+|..|.+.+ .++.++++.+.+..                                           
T Consensus         4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~   83 (341)
T PF13434_consen    4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE   83 (341)
T ss_dssp             SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred             eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence            4789999999999999998876 77888886632200                                           


Q ss_pred             -----cc--cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC--cEEEEEcC----CCCEEEcCEEEEccCCCCCch
Q 018652          109 -----RL--FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG--RVAAVKLE----DGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       109 -----~~--~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~--~~~~v~~~----~g~~i~~D~vi~a~G~~p~~~  174 (352)
                           ..  .-.++.++++-..++.+-.+..+.+|++|+...++  ....|.+.    +++.+.|+.||+++|..|..+
T Consensus        84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP  162 (341)
T PF13434_consen   84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP  162 (341)
T ss_dssp             HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred             hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence                 00  00122333333333444447779999999865443  34456652    346899999999999888754

>PRK07233 hypothetical protein; Provisional

Probab=95.74  E-value=0.013  Score=56.25  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=32.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      +|+|||+|..|+.+|..|++.|.+|+|+++.+++-
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G   35 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG   35 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            58999999999999999999999999999887653

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=95.72  E-value=0.014  Score=56.14  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      +||+|+|+|..|+.+|..|++.|++||++++++++-
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G   36 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG   36 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence            589999999999999999999999999999987653

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=95.71  E-value=0.17  Score=50.63  Aligned_cols=33  Identities=30%  Similarity=0.381  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      -.|+|||+|..|+-.|..+++.|.+|.|+++.+
T Consensus         5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            469999999999999999999999999988654

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.68  E-value=0.12  Score=51.84  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=39.7

Q ss_pred             HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCC--EEEc-CEEEEccCCC-CCchhhhh
Q 018652          119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTIVIGIGAK-PTVSPFER  178 (352)
Q Consensus       119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~-D~vi~a~G~~-p~~~~~~~  178 (352)
                      +.+.+++.||++++++.++++..+ ++++..|... +|+  .+.+ ..||+|+|-- -|.+++++
T Consensus       223 L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~~  286 (564)
T PRK12845        223 LFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRWK  286 (564)
T ss_pred             HHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHHH
Confidence            444567789999999999998743 5777776443 343  3555 5899998754 44444443

>PTZ00367 squalene epoxidase; Provisional

Probab=95.67  E-value=0.022  Score=56.88  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            3479999999999999999999999999999875

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.65  E-value=0.037  Score=53.67  Aligned_cols=81  Identities=17%  Similarity=0.151  Sum_probs=56.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh--CCcEEEcCCeEEEEEecCCCcE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRV  147 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~--~gV~~~~~~~v~~i~~~~~~~~  147 (352)
                      .+++++|+|.|-+|+.+|..|+++|.+|++.+..+..      +.     .+.+++  .|++++.+...        .. 
T Consensus         4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~------~~-----~~~l~~~~~gi~~~~g~~~--------~~-   63 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP------ER-----VAQIGKMFDGLVFYTGRLK--------DA-   63 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc------hh-----HHHHhhccCCcEEEeCCCC--------HH-
Confidence            3678999999999999999999999999998765431      11     122343  47777654310        00 


Q ss_pred             EEEEcCCCCEEEcCEEEEccCCCCCchhhhh
Q 018652          148 AAVKLEDGSTIDADTIVIGIGAKPTVSPFER  178 (352)
Q Consensus       148 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~  178 (352)
                              ..-.+|+||+++|..|..+.++.
T Consensus        64 --------~~~~~d~vv~spgi~~~~p~~~~   86 (445)
T PRK04308         64 --------LDNGFDILALSPGISERQPDIEA   86 (445)
T ss_pred             --------HHhCCCEEEECCCCCCCCHHHHH
Confidence                    01258999999999998776543

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=95.60  E-value=0.067  Score=49.55  Aligned_cols=91  Identities=15%  Similarity=0.249  Sum_probs=63.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccccc---------cCHHHHHHHHHHHHhCCcEEEcCCeE-E
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASI-K  137 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~~---------~~~~~~~~l~~~l~~~gV~~~~~~~v-~  137 (352)
                      ...+|.|||+|+.|+-.|..|.++  +.+|+++++.+.++.-.         .-+.+-+.+.+.++.....+..|..| +
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~   98 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGR   98 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecc
Confidence            344899999999999999998874  68899999887664310         11234456777778888888877544 1


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      .+           .+++ -+-.+|+||++.|...+
T Consensus        99 dv-----------sl~e-L~~~ydavvLaYGa~~d  121 (468)
T KOG1800|consen   99 DV-----------SLKE-LTDNYDAVVLAYGADGD  121 (468)
T ss_pred             cc-----------cHHH-HhhcccEEEEEecCCCC
Confidence            11           2211 13468999999998654

>PLN02268 probable polyamine oxidase

Probab=95.56  E-value=0.018  Score=55.59  Aligned_cols=37  Identities=24%  Similarity=0.409  Sum_probs=33.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~  108 (352)
                      .+|+|||+|.+|+-+|..|.+.|.+|+|++.++++-.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG   37 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence            3799999999999999999999999999998876543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.53  E-value=0.02  Score=60.50  Aligned_cols=26  Identities=42%  Similarity=0.796  Sum_probs=23.8

Q ss_pred             CCcEEeCCCCCCCCCCEEEecccccc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAF  210 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~  210 (352)
                      -|+|.||.+++|++||+||+|||+..
T Consensus       361 ~GGi~vd~~~~T~v~GLfAaGE~a~~  386 (897)
T PRK13800        361 ASGVWVDEHARTTVPGLYAAGDLACV  386 (897)
T ss_pred             cceEEecCCCcccCCCeEechhccCc
Confidence            47999999999999999999999764

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.51  E-value=0.046  Score=53.02  Aligned_cols=82  Identities=23%  Similarity=0.166  Sum_probs=56.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+++++|+|+|-+|+.+|..|++.|.+|++.++.....     .    ...+.+++.|+++..+.....+          
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~-----~----~~~~~l~~~g~~~~~~~~~~~~----------   64 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSE-----N----PEAQELLEEGIKVICGSHPLEL----------   64 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccc-----h----hHHHHHHhcCCEEEeCCCCHHH----------
Confidence            46889999999999999999999999999987543211     1    1223456678888654311110          


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                        +.    -.+|.||.++|..++.+++
T Consensus        65 --~~----~~~d~vV~s~gi~~~~~~~   85 (447)
T PRK02472         65 --LD----EDFDLMVKNPGIPYTNPMV   85 (447)
T ss_pred             --hc----CcCCEEEECCCCCCCCHHH
Confidence              00    0479999999998876654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.50  E-value=0.19  Score=53.21  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=29.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus        14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~   45 (897)
T PRK13800         14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKA   45 (897)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            46999999999999999999999999998864

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.48  E-value=0.049  Score=52.30  Aligned_cols=82  Identities=22%  Similarity=0.201  Sum_probs=60.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  150 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v  150 (352)
                      +++|+|+|-|-+|+.+|..|.++|.+|++.+.++.. ..        .....+...+|++..+....             
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~--------~~~~~~~~~~i~~~~g~~~~-------------   64 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EG--------LAAQPLLLEGIEVELGSHDD-------------   64 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cc--------hhhhhhhccCceeecCccch-------------
Confidence            899999999999999999999999999999866533 11        11123445678877654211             


Q ss_pred             EcCCCCEEEcCEEEEccCCCCCchhhhh
Q 018652          151 KLEDGSTIDADTIVIGIGAKPTVSPFER  178 (352)
Q Consensus       151 ~~~~g~~i~~D~vi~a~G~~p~~~~~~~  178 (352)
                          -..-.+|.||.++|..|+.++++.
T Consensus        65 ----~~~~~~d~vV~SPGi~~~~p~v~~   88 (448)
T COG0771          65 ----EDLAEFDLVVKSPGIPPTHPLVEA   88 (448)
T ss_pred             ----hccccCCEEEECCCCCCCCHHHHH
Confidence                013568999999999998876543

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.47  E-value=0.02  Score=56.30  Aligned_cols=36  Identities=28%  Similarity=0.391  Sum_probs=32.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ..+++|||+|..|+-+|..|++.|.+|+|+++...+
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~   38 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV   38 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence            467999999999999999999999999999987554

>PRK07208 hypothetical protein; Provisional

Probab=95.47  E-value=0.021  Score=55.85  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=33.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ..++|+|||+|.+|+-+|..|.+.|.+|+|+++++++
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~   39 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV   39 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4568999999999999999999999999999987654

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.44  E-value=0.027  Score=46.32  Aligned_cols=32  Identities=28%  Similarity=0.338  Sum_probs=30.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  101 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~  101 (352)
                      .+++++|||||.+|...+..|.+.|.+|+++.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            68999999999999999999999999999994

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.43  E-value=0.015  Score=44.12  Aligned_cols=35  Identities=37%  Similarity=0.478  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|||||..|..-+..|.+.|.+|+++.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            58999999999999999999999999999997753

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=95.25  E-value=0.13  Score=51.06  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      -..+....++.|..++.++.|+++.-. ++....|++..|. +++..+|-|+|+=.
T Consensus       190 C~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~-iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  190 CQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGS-IETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcc-eecceEEechhHHH
Confidence            345555668899999999999999754 3334488888885 99999999999743

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.21  E-value=0.04  Score=53.73  Aligned_cols=78  Identities=19%  Similarity=0.202  Sum_probs=56.5

Q ss_pred             cCCCeEEEECCChHHHH-HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcE
Q 018652           69 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  147 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~  147 (352)
                      ...+++.|+|-|-+|+. +|..|.++|.+|++.+....       +.    . +.|++.|+++..+....          
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~-------~~----~-~~l~~~gi~~~~~~~~~----------   62 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES-------AV----T-QRLLELGAIIFIGHDAE----------   62 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCHH----------
Confidence            45678999999999999 79999999999999876542       11    2 23667788887532100          


Q ss_pred             EEEEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          148 AAVKLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       148 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                       .  +     -.+|+||+++|..|+.+.+
T Consensus        63 -~--~-----~~~d~vv~spgi~~~~~~~   83 (461)
T PRK00421         63 -N--I-----KDADVVVYSSAIPDDNPEL   83 (461)
T ss_pred             -H--C-----CCCCEEEECCCCCCCCHHH
Confidence             0  0     1489999999999876654

>PRK08275 putative oxidoreductase; Provisional

Probab=95.20  E-value=0.026  Score=56.42  Aligned_cols=24  Identities=38%  Similarity=0.775  Sum_probs=22.5

Q ss_pred             CcEEeCCCCCCCCCCEEEeccccc
Q 018652          186 GGIQVDGQFRTRMPGIFAIGDVAA  209 (352)
Q Consensus       186 g~i~vd~~~~t~~~~Iya~GD~a~  209 (352)
                      |+|.||..++|++|++||+|||+.
T Consensus       357 Ggi~~d~~~~t~i~gl~a~Ge~~~  380 (554)
T PRK08275        357 SGVWVNEKAETTVPGLYAAGDMAS  380 (554)
T ss_pred             CcEEECCCCccCCCCEEECcccCC
Confidence            689999999999999999999975

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.20  E-value=0.031  Score=47.10  Aligned_cols=36  Identities=28%  Similarity=0.339  Sum_probs=30.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  108 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~  108 (352)
                      +|.|||+|..|..+|..++..|.+|+++++++.-+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~   36 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALE   36 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            589999999999999999999999999998875543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.18  E-value=0.23  Score=46.85  Aligned_cols=97  Identities=18%  Similarity=0.286  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccc-cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEE
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STID  159 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~  159 (352)
                      .--++-..+.++|.... .+++.++.|.. -..++.+.+...+++.||++++++.|+.|+.  + . ..+.+.++ ..+.
T Consensus        55 ~~~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~-~-~~v~~~~~~~~~~  129 (376)
T TIGR03862        55 DAVALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--G-T-LRFETPDGQSTIE  129 (376)
T ss_pred             CHHHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--C-c-EEEEECCCceEEe
Confidence            35566777888886544 35566777632 3457888999999999999999999999932  2 2 35565433 4699


Q ss_pred             cCEEEEccCCCC--Cc-------hhhhhcCCcc
Q 018652          160 ADTIVIGIGAKP--TV-------SPFERVGLNS  183 (352)
Q Consensus       160 ~D~vi~a~G~~p--~~-------~~~~~~gl~~  183 (352)
                      +|.||+|+|..+  .+       .+++++|...
T Consensus       130 a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i  162 (376)
T TIGR03862       130 ADAVVLALGGASWSQLGSDGAWQQVLDQRGVSV  162 (376)
T ss_pred             cCEEEEcCCCccccccCCCcHHHHHHHHCCCcc
Confidence            999999999864  22       3566666553

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=95.15  E-value=0.029  Score=55.19  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=32.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ++|+|||+|..|+-+|..|++.|.+|+|+++++.+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            57999999999999999999999999999988655

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.11  E-value=0.069  Score=49.06  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++|+|+|.+|.-+|..|.+.|.+|+++.|+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            469999999999999999999999999998853

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=95.06  E-value=0.031  Score=54.38  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=32.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhC----CCcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~----g~~Vtvv~~~~~~  106 (352)
                      ++|+|||||.+|+-+|..|.+.    |.+|+|++.++++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~   41 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV   41 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence            5799999999999999999998    9999999988765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.02  E-value=0.17  Score=46.61  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..++.|+|+|.+|.-+|..|++.|.+|+++.|+
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~   37 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS   37 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            357999999999999999999999999999875

>TIGR02734 crtI_fam phytoene desaturase

Probab=94.94  E-value=0.029  Score=55.36  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=30.6

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      |+|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~   33 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP   33 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            589999999999999999999999999988654

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02612 phytoene desaturase

Probab=94.88  E-value=0.12  Score=51.80  Aligned_cols=57  Identities=25%  Similarity=0.327  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                      ..+.+.+.+.+++.|.++++++.|++|..++++.+..+.+.+|+++++|.||++++.
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            345677777788899999999999999876666666788888999999999999864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.82  E-value=0.051  Score=46.73  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      .+++++|||||.+|...+..|.+.|.+|+++.+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            588999999999999999999999999999965

>TIGR02731 phytoene_desat phytoene desaturase

Probab=94.79  E-value=0.039  Score=53.59  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      +|+|||+|..|+-+|..|.+.|.+|+|+++++++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~   34 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVL   34 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            5899999999999999999999999999988654

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02576 protoporphyrinogen oxidase

Probab=94.76  E-value=0.046  Score=53.75  Aligned_cols=38  Identities=24%  Similarity=0.299  Sum_probs=33.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEecCCcccc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ  108 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~~  108 (352)
                      ..+|+|||||.+|+-+|..|.+. |.+|+|++.++++-.
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            45799999999999999999999 999999999876643

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.72  E-value=0.085  Score=48.48  Aligned_cols=79  Identities=19%  Similarity=0.300  Sum_probs=53.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  152 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~  152 (352)
                      ++.|+|+|.+|.-++..|.+.|.+|+++.|.++              .+.+++.|+.+.....  ...      ......
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~--------------~~~l~~~GL~i~~~~~--~~~------~~~~~~   59 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR--------------LEALKKKGLRIEDEGG--NFT------TPVVAA   59 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH--------------HHHHHhCCeEEecCCC--ccc------cccccc
Confidence            789999999999999999999988888877643              2446777888876544  100      001111


Q ss_pred             CC-CCEEEcCEEEEccCCCCCc
Q 018652          153 ED-GSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       153 ~~-g~~i~~D~vi~a~G~~p~~  173 (352)
                      .+ ...-++|.||+++=.-...
T Consensus        60 ~~~~~~~~~Dlviv~vKa~q~~   81 (307)
T COG1893          60 TDAEALGPADLVIVTVKAYQLE   81 (307)
T ss_pred             cChhhcCCCCEEEEEeccccHH
Confidence            21 2234799999997655443

>PRK07804 L-aspartate oxidase; Provisional

Probab=94.70  E-value=0.054  Score=53.97  Aligned_cols=54  Identities=22%  Similarity=0.271  Sum_probs=36.0

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCc-ccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|+|.||.+++|++||+||+|+|+....  .|. ...-.....+...|+.+++++..
T Consensus       357 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~--hGa~~l~~~sl~~~~v~G~~ag~~aa~  411 (541)
T PRK07804        357 CGGVVTDVYGRTSVPGLYAAGEVACTGV--HGANRLASNSLLEGLVVGERAGAAAAA  411 (541)
T ss_pred             CCCEEECCCCcccCCCeEEccccccccc--CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999974211  011 00011334466677777777753

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=94.67  E-value=0.16  Score=46.99  Aligned_cols=58  Identities=22%  Similarity=0.434  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          112 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       112 ~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      +..+...+.+.+.+.|++++.+++|+++... ++.+..|.+.+| .+.+|.||+|+|.-.
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~  193 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWA  193 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence            3466777888889999999999999999854 455666777777 799999999999654

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK08071 L-aspartate oxidase; Provisional

Probab=94.64  E-value=0.059  Score=53.25  Aligned_cols=55  Identities=24%  Similarity=0.401  Sum_probs=37.5

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|||.+|.+.+|++||+||+|+|+.....-.++.. -.....+...|+.|++++..
T Consensus       332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~  386 (510)
T PRK08071        332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILT  386 (510)
T ss_pred             cCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHh
Confidence            38999999999999999999999742110001111 11445577788888888763

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=94.63  E-value=0.048  Score=55.11  Aligned_cols=24  Identities=38%  Similarity=0.423  Sum_probs=21.6

Q ss_pred             cEEeC-------------CCCCCCCCCEEEecccccc
Q 018652          187 GIQVD-------------GQFRTRMPGIFAIGDVAAF  210 (352)
Q Consensus       187 ~i~vd-------------~~~~t~~~~Iya~GD~a~~  210 (352)
                      ||.||             ++++|++||+||+|||+..
T Consensus       371 Gi~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~  407 (608)
T PRK06854        371 GYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGG  407 (608)
T ss_pred             EEEecCcccccccccccccccccCCCCEEEeeecCCC
Confidence            58999             9999999999999999753

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.62  E-value=0.048  Score=48.86  Aligned_cols=34  Identities=26%  Similarity=0.160  Sum_probs=30.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~  103 (352)
                      ...+|+|+|.|-+|.++|..|++.| .++++++..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            5678999999999999999999999 679998865

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=94.58  E-value=0.046  Score=53.28  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhC------CCcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtvv~~~~~~  106 (352)
                      ++|+|||||.+|+-+|..|.+.      +.+|+|++.++++
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~   42 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL   42 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCc
Confidence            4799999999999999999986      3789999988765

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.57  E-value=0.13  Score=50.44  Aligned_cols=79  Identities=19%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+++++|+|.|-+|+.+|..|.+.|.+|++.++...        .    ..+.+++.||+++.+...       ..   .
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~--------~----~~~~l~~~gi~~~~~~~~-------~~---~   71 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET--------A----RHKLIEVTGVADISTAEA-------SD---Q   71 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH--------H----HHHHHHhcCcEEEeCCCc-------hh---H
Confidence            467899999999999999999999999988775321        1    112345568888654210       00   0


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                             .-.+|+||.++|..|+.+.+.
T Consensus        72 -------~~~~d~vV~Spgi~~~~p~~~   92 (473)
T PRK00141         72 -------LDSFSLVVTSPGWRPDSPLLV   92 (473)
T ss_pred             -------hcCCCEEEeCCCCCCCCHHHH
Confidence                   124799999999998876543

>PRK09077 L-aspartate oxidase; Provisional

Probab=94.50  E-value=0.066  Score=53.29  Aligned_cols=55  Identities=29%  Similarity=0.392  Sum_probs=37.4

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|||.+|.+.+|++||+||+|+|+.....-.++.. -.....|.-.|+.|++++..
T Consensus       353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~  407 (536)
T PRK09077        353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILS  407 (536)
T ss_pred             cCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999742111001111 12445577778888888764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.46  E-value=0.12  Score=50.88  Aligned_cols=79  Identities=22%  Similarity=0.238  Sum_probs=55.5

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  148 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~  148 (352)
                      ..+++++|+|.|.+|+.++..|...|.+|++.+..+         .   .. +.+++.|+.+..+..    .   .    
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~---------~---~~-~~l~~~g~~~~~~~~----~---~----   65 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP---------D---AL-RPHAERGVATVSTSD----A---V----   65 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH---------H---HH-HHHHhCCCEEEcCcc----h---H----
Confidence            467899999999999999999999999999976432         1   12 225556887764321    0   0    


Q ss_pred             EEEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          149 AVKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       149 ~v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                            ...-.+|.||.++|..++.+.++
T Consensus        66 ------~~l~~~D~VV~SpGi~~~~p~~~   88 (488)
T PRK03369         66 ------QQIADYALVVTSPGFRPTAPVLA   88 (488)
T ss_pred             ------hHhhcCCEEEECCCCCCCCHHHH
Confidence                  00124799999999998876543

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=94.46  E-value=0.062  Score=48.69  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=34.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL  110 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~  110 (352)
                      +.+|||+|+.|.-+|..++++|.+|-+|++++++....
T Consensus         3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa   40 (374)
T COG0562           3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA   40 (374)
T ss_pred             cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence            57899999999999999999999999999998775543

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=94.44  E-value=0.07  Score=53.64  Aligned_cols=54  Identities=22%  Similarity=0.367  Sum_probs=34.7

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|+|.||.+++|++||+||+|+|+.....-.++.. -.....|.-.|++|++++.
T Consensus       358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlg-gnsl~~a~v~Gr~Ag~~aa  411 (582)
T PRK09231        358 MGGIETDQNCETRIKGLFAVGECSSVGLHGANRLG-SNSLAELVVFGRVAGEQAA  411 (582)
T ss_pred             CCCEEECCCCccccCCEEecccccccccCCCCCcc-hhHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999742111000100 1123346666777776665

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=94.43  E-value=0.055  Score=52.02  Aligned_cols=35  Identities=20%  Similarity=0.428  Sum_probs=31.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~  106 (352)
                      ++++|||||.+|+-.|..|.+.+  .+++|+++++++
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~   37 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV   37 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence            47999999999999999999999  899999998654

>TIGR00551 nadB L-aspartate oxidase

Probab=94.42  E-value=0.075  Score=52.23  Aligned_cols=55  Identities=29%  Similarity=0.395  Sum_probs=37.3

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|+|.+|.+.||++||+||+|+|+.....-.++. .-.....|.-.|+.+++++..
T Consensus       333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl-~g~sl~~~~v~G~~Ag~~aa~  387 (488)
T TIGR00551       333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRL-ASNSLLECLVFGWSAAEDISR  387 (488)
T ss_pred             cCCEEECCCCcccCCCEEECccccccccCccccc-chhHHHHHHHHHHHHHHHHHh
Confidence            4899999999999999999999974211100010 011345577788888888764

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=94.39  E-value=0.25  Score=49.25  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=30.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ...|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus         6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~   38 (562)
T COG1053           6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKA   38 (562)
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcc
Confidence            357999999999999999999999999999865

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=94.35  E-value=0.061  Score=50.85  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      +++|||+|.+|+.+|..|++.|.+|+++++++++
T Consensus         3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i   36 (377)
T TIGR00031         3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI   36 (377)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            5899999999999999999999999999987544

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.35  E-value=0.056  Score=44.41  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=29.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      +|.|+|+|..|.-+|..|++.|.+|+++.+.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            68999999999999999999999999998754

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.25  E-value=0.098  Score=44.27  Aligned_cols=78  Identities=19%  Similarity=0.297  Sum_probs=46.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------ccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  145 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~  145 (352)
                      +|.|+|.|++|+-+|..|++.|.+|+.++.++...       .....+.+.+.+.+.++..+..+..+.           
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~-----------   70 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDI-----------   70 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEH-----------
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhh-----------
Confidence            78999999999999999999999999998764321       112456667777776655544443210           


Q ss_pred             cEEEEEcCCCC-EEEcCEEEEccCCC
Q 018652          146 RVAAVKLEDGS-TIDADTIVIGIGAK  170 (352)
Q Consensus       146 ~~~~v~~~~g~-~i~~D~vi~a~G~~  170 (352)
                               .+ .-.+|.+++|.+.-
T Consensus        71 ---------~~ai~~adv~~I~VpTP   87 (185)
T PF03721_consen   71 ---------EEAIKDADVVFICVPTP   87 (185)
T ss_dssp             ---------HHHHHH-SEEEE----E
T ss_pred             ---------hhhhhccceEEEecCCC
Confidence                     01 24689999998754

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.22  E-value=0.23  Score=45.40  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=28.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      ++.|+|+|.+|.-+|..|++.|.+|+++.|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            689999999999999999999999999876

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=94.09  E-value=0.064  Score=52.58  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=28.9

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~  103 (352)
                      .|+|||||.+|+.+|..|++.  |.+|+|+++.
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~   34 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERL   34 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence            589999999999999999997  8999999985

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02529 lysine-specific histone demethylase 1

Probab=94.07  E-value=0.08  Score=54.30  Aligned_cols=35  Identities=20%  Similarity=0.451  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      .++|+|||+|..|+.+|..|++.|.+|++++.+++
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~  194 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR  194 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            46899999999999999999999999999998643

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=94.05  E-value=0.073  Score=52.13  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      +++|||+|..|+-+|..|.+.|.+|+++++++.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~   34 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFI   34 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            4899999999999999999999999999988755

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN03000 amine oxidase

Probab=94.03  E-value=0.14  Score=53.29  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      .++|+|||+|+.|+.+|..|.+.|.+|++++.++++
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri  219 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP  219 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence            478999999999999999999999999999987544

>TIGR02731 phytoene_desat phytoene desaturase

Probab=94.02  E-value=0.25  Score=48.02  Aligned_cols=57  Identities=23%  Similarity=0.311  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-----EEEcCEEEEccCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA  169 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-----~i~~D~vi~a~G~  169 (352)
                      ..+.+.+.+.+++.|.++++++.|++|...+++.+..+.+.+|+     ++.+|.||++++.
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            45667778888889999999999999976556666677776665     7999999999875

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR02730 carot_isom carotene isomerase

Probab=94.00  E-value=0.25  Score=48.58  Aligned_cols=57  Identities=23%  Similarity=0.284  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      ..+.+.+.+.+++.|+++++++.|++|... ++.+..|++.+|+++++|.||+++|..
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            356677888899999999999999999754 466778889999999999999998753

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=93.99  E-value=0.13  Score=49.50  Aligned_cols=55  Identities=31%  Similarity=0.456  Sum_probs=39.3

Q ss_pred             CcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          186 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       186 g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      |||.||.+.||+.|++||+|.|+.....--++.+. .+.-.+.-.|..+|+.|...
T Consensus       342 GGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLAS-NSLLE~vV~g~~aA~~i~~~  396 (518)
T COG0029         342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLAS-NSLLECLVFGKRAAEDIAGR  396 (518)
T ss_pred             ccEEECCCCcccCcccEEeeeecccccccchhhhh-hhHHHHHHHHHHHHHHhhcc
Confidence            89999999999999999999999754322122111 12234667788888888753

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=93.99  E-value=0.73  Score=43.04  Aligned_cols=96  Identities=31%  Similarity=0.407  Sum_probs=63.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-------------------------------------cC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FT  112 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-------------------------------------~~  112 (352)
                      ....++|||+|+-|.-.|...+++|.+...++.+..+-..+                                     ++
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d  117 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD  117 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence            45789999999999999999999999998888753221100                                     00


Q ss_pred             ------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCC
Q 018652          113 ------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       113 ------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~  170 (352)
                                  ..+..-+...+++++|.++.+.  -++.   +.....+...||+  .+++..+|+|||..
T Consensus       118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~--gsf~---~p~~V~v~k~dg~~~ii~aKnIiiATGSe  184 (506)
T KOG1335|consen  118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGF--GSFL---DPNKVSVKKIDGEDQIIKAKNIIIATGSE  184 (506)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeee--Eeec---CCceEEEeccCCCceEEeeeeEEEEeCCc
Confidence                        1122334455677777777664  2332   1222345555553  68999999999984

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=93.99  E-value=0.085  Score=50.10  Aligned_cols=40  Identities=23%  Similarity=0.330  Sum_probs=35.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  109 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~  109 (352)
                      ...+|+|+|+|++|+-.|..|.+.|.+|++++.++++..|
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR   45 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR   45 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence            4678999999999999999999999999999988776544

>PRK08401 L-aspartate oxidase; Provisional

Probab=93.98  E-value=0.1  Score=50.93  Aligned_cols=55  Identities=25%  Similarity=0.395  Sum_probs=36.7

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|+|.+|.+.||++||+||+|+|+.....-.++.. -.....+...|+.+++++..
T Consensus       310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~-gnsl~~~~v~G~~ag~~aa~  364 (466)
T PRK08401        310 IGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLA-SNSLLECIVSGLEVARTISR  364 (466)
T ss_pred             CCCEEECCCCcccCCCEEECccccccCCCCCCcch-hHHHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999742111011111 11334466778888887763

>TIGR02730 carot_isom carotene isomerase

Probab=93.91  E-value=0.08  Score=52.11  Aligned_cols=34  Identities=15%  Similarity=0.089  Sum_probs=31.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      .++|||+|..|+-+|..|++.|.+|+|+++++.+
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~   35 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP   35 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            4899999999999999999999999999998654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.91  E-value=0.1  Score=52.09  Aligned_cols=51  Identities=24%  Similarity=0.361  Sum_probs=34.7

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCC-c-cCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPL-K-MYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~-~-~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|||.+|.+++|++||+||+|+|+.... . ..+..    ....|...|++|++++.
T Consensus       348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~----sl~~a~v~Gr~Ag~~aa  400 (543)
T PRK06263        348 MGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGN----ALADTQVFGAIAGKSAA  400 (543)
T ss_pred             cCCEEECCCCcccCCCeEeccccccCCCCCCccchh----hhhhhHHHHHHHHHHHH
Confidence            4899999999999999999999975321 1 11111    23346666777766665

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.90  E-value=0.06  Score=50.27  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=29.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++.|+|.|++|+-.|..|++.|++|+.++-.+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            68999999999999999999999999987653

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.75  E-value=0.098  Score=47.59  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=33.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~  108 (352)
                      ++|.|||+|..|..+|..++..|.+|+++++.+..+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~   42 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELAT   42 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            5899999999999999999999999999998876554

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=93.73  E-value=0.36  Score=46.78  Aligned_cols=60  Identities=18%  Similarity=0.330  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      .++.+.+.+.++..|.++++++.|++|..++++.+..|++.+|+++.|+.||....+.|.
T Consensus       232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            367778888889999999999999999866556777899999999999999998888776

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.70  E-value=0.24  Score=48.42  Aligned_cols=81  Identities=15%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+++++|+|.|.+|..+|..|.+.|.+|++.+.++...    .+.    ..+ |++ ++.+..+.       ...     
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~----~~~----~~~-l~~-~~~~~~~~-------~~~-----   64 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVE----ARE----VGA-LAD-AALLVETE-------ASA-----   64 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCccc----chH----HHH-Hhh-cCEEEeCC-------CCh-----
Confidence            47899999999999999999999999999987553211    111    112 444 33333221       000     


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                           ...-.+|+||.++|..|+.+.++
T Consensus        65 -----~~~~~~d~vV~SpgI~~~~p~~~   87 (468)
T PRK04690         65 -----QRLAAFDVVVKSPGISPYRPEAL   87 (468)
T ss_pred             -----HHccCCCEEEECCCCCCCCHHHH
Confidence                 00124899999999998876543

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=93.60  E-value=1.6  Score=40.24  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=27.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhC----CCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~----g~~Vtvv~~~  103 (352)
                      ..|+|||||.+|...|.-|.++    |.+|.++++.
T Consensus        87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd  122 (509)
T KOG2853|consen   87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD  122 (509)
T ss_pred             cCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence            3699999999999999988653    6889999887

>PLN02487 zeta-carotene desaturase

Probab=93.59  E-value=0.11  Score=51.92  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=32.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ++|+|||+|..|+-+|..|.+.|++|+++++.+.+
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~  110 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI  110 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence            48999999999999999999999999999987755

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.51  E-value=0.18  Score=41.36  Aligned_cols=39  Identities=28%  Similarity=0.347  Sum_probs=29.6

Q ss_pred             HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           66 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        66 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+-.+|+++|+|-|..|--+|..|+.+|.+|++.+..|
T Consensus        18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            345589999999999999999999999999999998754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=93.47  E-value=0.12  Score=53.39  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=32.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      .++|+|||+|..|+.+|..|.+.|.+|++++.+.++
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~  273 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP  273 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence            467999999999999999999999999999987544

>PRK07512 L-aspartate oxidase; Provisional

Probab=93.45  E-value=0.13  Score=50.98  Aligned_cols=55  Identities=31%  Similarity=0.441  Sum_probs=35.9

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|+|.+|.+.+|++||+||+|+|+.....-.++.. -.....+...|+.+++++..
T Consensus       341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~-gnsl~~~~v~G~~ag~~aa~  395 (513)
T PRK07512        341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLA-SNSLLEAVVFAARAAEDIAG  395 (513)
T ss_pred             cCCEEECCCCccccCCEEecccccccCCCcccchH-HHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999742111001111 11333466677777777653

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.44  E-value=0.54  Score=43.31  Aligned_cols=100  Identities=25%  Similarity=0.392  Sum_probs=65.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc--------------ccc----------------------cc----
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------LQR----------------------LF----  111 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~--------------~~~----------------------~~----  111 (352)
                      -..+|||||--|+..|...++.|.++-+++..-.+              +..                      .+    
T Consensus        21 fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~  100 (478)
T KOG0405|consen   21 FDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKV  100 (478)
T ss_pred             cceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHHH
Confidence            35789999999999999999999999888755111              000                      00    


Q ss_pred             -----CH---HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCchhh
Q 018652          112 -----TP---SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       112 -----~~---~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~~  176 (352)
                           +.   .+....++.|.+.+|+++.+.  .++.  +++.+ .|+..||+  .+.+..+++|+|.+|..+-.
T Consensus       101 ik~krdayi~RLngIY~~~L~k~~V~~i~G~--a~f~--~~~~v-~V~~~d~~~~~Ytak~iLIAtGg~p~~PnI  170 (478)
T KOG0405|consen  101 IKQKRDAYILRLNGIYKRNLAKAAVKLIEGR--ARFV--SPGEV-EVEVNDGTKIVYTAKHILIATGGRPIIPNI  170 (478)
T ss_pred             HHhhhhHHHHHHHHHHHhhccccceeEEeee--EEEc--CCCce-EEEecCCeeEEEecceEEEEeCCccCCCCC
Confidence                 00   112234455666778887764  2332  23333 56667774  36899999999999865533

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.41  E-value=0.49  Score=44.06  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+|.|||.|.+|.-+|..|++.|.+|+++.|.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            46999999999999999999999999998763

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=93.41  E-value=0.19  Score=48.87  Aligned_cols=74  Identities=23%  Similarity=0.249  Sum_probs=53.1

Q ss_pred             eEEEECCChHHHH-HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652           73 KVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  151 (352)
Q Consensus        73 ~vvVvGgG~~g~e-~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~  151 (352)
                      ++.++|-|-+|+. +|..|.++|.+|++.+....       +     ..+.|++.|+++..+....           .  
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~-----------~--   55 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN-------A-----TTKRLEALGIPIYIGHSAE-----------N--   55 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc-------h-----HHHHHHHCcCEEeCCCCHH-----------H--
Confidence            4789999999998 99999999999999875531       1     1234677788887542110           0  


Q ss_pred             cCCCCEEEcCEEEEccCCCCCchhh
Q 018652          152 LEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       152 ~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                      +     -.+|+||+++|..|+.+.+
T Consensus        56 ~-----~~~d~vV~spgi~~~~p~~   75 (448)
T TIGR01082        56 L-----DDADVVVVSAAIKDDNPEI   75 (448)
T ss_pred             C-----CCCCEEEECCCCCCCCHHH
Confidence            0     1389999999999876654

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=93.40  E-value=0.57  Score=42.58  Aligned_cols=66  Identities=9%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             HHHHHHHhCCcEEEcCCeEEEEEecCCC---cEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCccc
Q 018652          118 RYEQLYQQNGVKFVKGASIKNLEAGSDG---RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS  184 (352)
Q Consensus       118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~---~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~  184 (352)
                      .+-+.++..|-+++++.++..+..+.++   ....|....++++++..++.|+|...+ ...+.+|.+.+
T Consensus       201 s~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd-r~aa~sgc~~d  269 (453)
T KOG2665|consen  201 SFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD-RCAALSGCELD  269 (453)
T ss_pred             HHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh-HHHHHhCCCCC
Confidence            3445578888899999999888755442   223455555789999999999998765 34445555544

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=93.35  E-value=0.11  Score=52.16  Aligned_cols=53  Identities=25%  Similarity=0.359  Sum_probs=35.2

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcc-cccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT-ARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~-~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|+|.+|.+.+|++||+||+|+|+....  .|.. .--.....+.-.|+.|++++.
T Consensus       357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~--hGanrl~g~sl~~~~v~G~~ag~~aa  410 (580)
T TIGR01176       357 MGGIETDINCETRIKGLFAVGECASVGL--HGANRLGSNSLAELVVFGRRAGEAAA  410 (580)
T ss_pred             CCCeeECcCcccccCCeEeeecccccCc--CCCccccchhHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999974211  1110 001133446666777777665

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=93.35  E-value=0.66  Score=44.21  Aligned_cols=54  Identities=15%  Similarity=0.338  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  168 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  168 (352)
                      .++..+.+-+++.|-++.++..|.+|.-+ ++...+|.++||+++.+..|+.-++
T Consensus       265 avs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt  318 (561)
T KOG4254|consen  265 AVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT  318 (561)
T ss_pred             HHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence            34455556668899999999999999855 5888899999999999977666544

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.31  E-value=0.15  Score=44.29  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++|+|||||.+|..=+..|.+.|.+|||+.+.
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5789999999999999999999999999999764

>TIGR02734 crtI_fam phytoene desaturase

Probab=93.29  E-value=0.4  Score=47.29  Aligned_cols=57  Identities=28%  Similarity=0.418  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      ..+.+.+.+.+++.|+++++++.|++|... ++.+..|++.+|+++.+|.||++++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence            356778888889999999999999999854 456667888999899999999998753

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02568 polyamine oxidase

Probab=93.27  E-value=0.13  Score=51.10  Aligned_cols=37  Identities=19%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-----CcEEEEecCCcc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g-----~~Vtvv~~~~~~  106 (352)
                      ...+|+|||+|..|+-+|..|.+.|     .+|+|++++.++
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~   45 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI   45 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence            3468999999999999999999887     889999987654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.24  E-value=0.2  Score=40.06  Aligned_cols=35  Identities=34%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCc-EEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~  104 (352)
                      .+++++|+|+|-+|-.++..|...|.+ |+++.|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            689999999999999999999999987 99988753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=93.08  E-value=0.11  Score=48.65  Aligned_cols=37  Identities=35%  Similarity=0.443  Sum_probs=32.1

Q ss_pred             CccCCceEEEECCC--cEEEeCCCeEEecCeEEEccCCC
Q 018652            1 MIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT   37 (352)
Q Consensus         1 ~~~~~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~   37 (352)
                      ++++++|.+|+.++  ..+.+++|+++.+|.||||||..
T Consensus       128 i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~  166 (408)
T COG2081         128 IRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGK  166 (408)
T ss_pred             EEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCc
Confidence            46788999999885  78899999889999999999943

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=93.05  E-value=0.12  Score=50.91  Aligned_cols=33  Identities=18%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~  104 (352)
                      ..|+|||||.+|+.+|..|+++  +.+|+|+++..
T Consensus         6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            4799999999999999999985  78999999764

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.01  E-value=0.3  Score=47.16  Aligned_cols=78  Identities=18%  Similarity=0.166  Sum_probs=52.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH-hCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK  151 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~-~~gV~~~~~~~v~~i~~~~~~~~~~v~  151 (352)
                      ++.|+|-|-+|+.+|..|.++|.+|++.+..+....    +    .....++ ..|++++.+....           .+ 
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~----~----~~~~~~~~~~gi~~~~g~~~~-----------~~-   60 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEEL----E----PSMGQLRLNEGSVLHTGLHLE-----------DL-   60 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccc----h----hHHHHHhhccCcEEEecCchH-----------Hh-
Confidence            478999999999999999999999999876543111    1    1111223 3588887653210           01 


Q ss_pred             cCCCCEEEcCEEEEccCCCCCchhh
Q 018652          152 LEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       152 ~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                            -.+|.||+++|..|+.+.+
T Consensus        61 ------~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087        61 ------NNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             ------ccCCEEEECCCCCCCCHHH
Confidence                  2479999999998876654

>PLN02612 phytoene desaturase

Probab=92.97  E-value=0.15  Score=51.07  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      .+++|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~  128 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL  128 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            4578999999999999999999999999999987653

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.97  E-value=0.15  Score=51.08  Aligned_cols=51  Identities=22%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             CCcEEeCCCCCCC-CCCEEEecccccc--CC-ccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRTR-MPGIFAIGDVAAF--PL-KMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t~-~~~Iya~GD~a~~--~~-~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|+|.||.+.+|+ +||+||+|+|+..  .. ..++..    ....+.-.|+.|++++.
T Consensus       346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggn----sl~~~~v~G~~Ag~~aa  400 (566)
T PRK06452        346 MGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSN----SLLDTLVFGQVTGRTVV  400 (566)
T ss_pred             cCCeEECCCCCcCCcCCeEecccccccCCCCcccccch----HHHHHHHHHHHHHHHHH
Confidence            4899999999995 9999999999752  11 111211    33345666666666654

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.91  E-value=0.24  Score=44.84  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=30.7

Q ss_pred             cCCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEec
Q 018652           69 EKAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        69 ~~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      ..+++++|+|.|. .|.-+|..|.+.|..||++++
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~  191 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS  191 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence            3789999999886 999999999999999999876

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=92.77  E-value=0.19  Score=50.47  Aligned_cols=53  Identities=23%  Similarity=0.206  Sum_probs=34.6

Q ss_pred             CCcEEeCCCCC----CCCCCEEEeccccccCCccCCc-ccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFR----TRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~----t~~~~Iya~GD~a~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|++.||..+|    |++||+||+|+|+....  .|. +..-.....|...|+.|++++.
T Consensus       342 ~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~--hGa~rl~g~sl~~a~v~G~~Ag~~aa  399 (566)
T TIGR01812       342 MGGIPTDYTGRVICETIVKGLFAAGECACVSV--HGANRLGGNSLLELVVFGRIAGEAAA  399 (566)
T ss_pred             CCCeEECcCcccccCcccCCeeecccccccCc--CcccccchhhHHHHHHHHHHHHHHHH
Confidence            48999999999    99999999999975211  111 0001133446666777776664

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN02815 L-aspartate oxidase

Probab=92.66  E-value=0.2  Score=50.37  Aligned_cols=54  Identities=26%  Similarity=0.340  Sum_probs=35.8

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|||.+|.+.+|++||+||+|+|+.....-.++.. -.....+.-.|+.|++.+.
T Consensus       377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~-gnsl~e~lvfGr~Ag~~aa  430 (594)
T PLN02815        377 CGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSI  430 (594)
T ss_pred             CCCeeECCCCceecCCEEecccccccCCCCCCcch-hhHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999742111000111 1134456677777777765

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=92.64  E-value=0.15  Score=47.90  Aligned_cols=53  Identities=30%  Similarity=0.540  Sum_probs=42.3

Q ss_pred             HhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch-hhhhcC
Q 018652          124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-PFERVG  180 (352)
Q Consensus       124 ~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-~~~~~g  180 (352)
                      ...||-+..+..++.++.. +.   .|.+.||.+|.+|-++++||.+|... .+++++
T Consensus       268 ~nGGvAvl~G~kvvkid~~-d~---~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~  321 (659)
T KOG1346|consen  268 VNGGVAVLRGRKVVKIDEE-DK---KVILNDGTTIGYDKCLIATGVRPKKLQVFEEAS  321 (659)
T ss_pred             ccCceEEEeccceEEeecc-cC---eEEecCCcEeehhheeeecCcCcccchhhhhcC
Confidence            5578999999999999743 22   67899999999999999999999753 345444

>PRK06175 L-aspartate oxidase; Provisional

Probab=92.60  E-value=0.21  Score=48.26  Aligned_cols=53  Identities=23%  Similarity=0.294  Sum_probs=37.0

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccc--cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAA--FPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~--~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|+|.||...||+.||+||+|.|+.  .....  +. .-.....+.-.|+.|++++..
T Consensus       331 ~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~n--rl-~gnsl~~~lvfGr~Ag~~a~~  385 (433)
T PRK06175        331 MGGIKVDLNSKTSMKNLYAFGEVSCTGVHGAN--RL-ASNSLLEGLVFSKRGAEKINS  385 (433)
T ss_pred             cCCEEECCCccccCCCeEecccccccCCCccc--cc-hhHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999974  22110  10 011344577778888888753

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=92.52  E-value=0.22  Score=50.32  Aligned_cols=51  Identities=22%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCc--cCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLK--MYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~--~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|+|.+|...+|++|++||+|+|+.....  .++..    ....+.-.|+.|++++.
T Consensus       370 ~gG~~~d~~~~t~i~gL~a~Ge~~~~~hg~nrl~~~----sl~~~~v~g~~Ag~~aa  422 (603)
T TIGR01811       370 MGGLWVDYDQMTNIPGLFAAGECDFSQHGANRLGAN----SLLSAIADGYFALPFTI  422 (603)
T ss_pred             CCCeeECCCCcccCCCEEECcccccCcCCCccchhH----HHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999752211  11111    33345555666666554

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.37  E-value=0.22  Score=50.13  Aligned_cols=52  Identities=21%  Similarity=0.215  Sum_probs=33.5

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcc-cccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT-ARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~-~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|||.||.+.+|++||+||+|+|+...   .|.. ..-.....|.-.|+.+++++.
T Consensus       355 ~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa  407 (589)
T PRK08641        355 MGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAV  407 (589)
T ss_pred             CCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHH
Confidence            489999999999999999999997421   1110 001133345555666665554

>PLN02676 polyamine oxidase

Probab=92.29  E-value=0.23  Score=48.84  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=33.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCccc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLL  107 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~~  107 (352)
                      ...+|+|||+|..|+-+|..|++.|. +|+++++++++-
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G   63 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG   63 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence            35689999999999999999999997 699999886653

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.29  E-value=0.26  Score=44.79  Aligned_cols=36  Identities=31%  Similarity=0.379  Sum_probs=32.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      ++|.|||+|..|..+|..+++.|.+|+++++++..+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l   39 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEAL   39 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence            679999999999999999999999999998876433

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=92.23  E-value=0.35  Score=45.81  Aligned_cols=56  Identities=20%  Similarity=0.226  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      ..+...+.+.+++ |++++.++.|.+++.. ++. ..+++.+|+.+.+|.||+|+|.-.
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccc
Confidence            4566777777778 9999999999999854 333 467788888899999999999654

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=92.20  E-value=0.15  Score=48.49  Aligned_cols=44  Identities=20%  Similarity=0.353  Sum_probs=36.4

Q ss_pred             cEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          187 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       187 ~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      .+.+|+.+.|+.+|+|++||++.+..          .+.+|...|-.+|+.|+.
T Consensus       438 ri~~d~~~~t~i~gLy~aGdGAG~ar----------gI~~Aaa~Gi~~A~~i~~  481 (486)
T COG2509         438 RIKVDEDLSTSIKGLYPAGDGAGLAR----------GIVSAAADGIKAAEGIAR  481 (486)
T ss_pred             eEeecccceeeecceEEccccccccc----------hhHHHhhhhHHHHHHHHH
Confidence            57789899999999999999998754          455677888888888874

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.16  E-value=0.24  Score=45.71  Aligned_cols=37  Identities=27%  Similarity=0.288  Sum_probs=33.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      -++|.|||+|.+|..+|..++..|.+|+++++.+..+
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~   43 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAE   43 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence            4789999999999999999999999999999876544

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=92.07  E-value=0.22  Score=45.27  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=29.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcccc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQ  108 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~  108 (352)
                      .++|||+|..|+-+|..|++.+ .+|.|+++++....
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~   38 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP   38 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence            4799999999999999999987 69999999976543

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=92.03  E-value=0.23  Score=46.83  Aligned_cols=38  Identities=26%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEE--EEecCCcc
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTT--IIFPENHL  106 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vt--vv~~~~~~  106 (352)
                      ..+.+++|+|||.+|+-+|.+|++++.+++  +++.++++
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence            357899999999999999999999987764  47766554

>PRK07395 L-aspartate oxidase; Provisional

Probab=92.02  E-value=0.24  Score=49.42  Aligned_cols=54  Identities=24%  Similarity=0.350  Sum_probs=35.4

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|||.+|.+.+|++||+||+|.|+.....-.++.. -.....+.-.|+.+++.+.
T Consensus       347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~-gnsl~e~lvfG~~a~~~~~  400 (553)
T PRK07395        347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLA-SNSLLECLVFAAQLAQLEL  400 (553)
T ss_pred             CCCeeECCCCcccCCCEEECccccccCCCcccchH-HHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999742111111111 1123346666777777764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=92.00  E-value=0.62  Score=38.74  Aligned_cols=34  Identities=32%  Similarity=0.422  Sum_probs=30.4

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|+|+|. .|..+|..|.++|.+|+++.|.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            689999999997 5999999999999999988764

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.96  E-value=0.48  Score=46.04  Aligned_cols=80  Identities=16%  Similarity=0.238  Sum_probs=54.9

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh--CCcEEEcCC-eEEEEEecCCC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ--NGVKFVKGA-SIKNLEAGSDG  145 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~--~gV~~~~~~-~v~~i~~~~~~  145 (352)
                      +....++|+|-|-+|+.+|..|.++|.+|++.+..+.      .+. .    +.|++  .|++++.+. ...        
T Consensus         4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~------~~~-~----~~l~~~~~g~~~~~~~~~~~--------   64 (448)
T PRK03803          4 QSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ------PPG-L----DTLAREFPDVELRCGGFDCE--------   64 (448)
T ss_pred             ccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC------chh-H----HHHHhhcCCcEEEeCCCChH--------
Confidence            4566799999999999999999999999999876541      111 1    22444  377776531 100        


Q ss_pred             cEEEEEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          146 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       146 ~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                         .       .-.+|.||+++|..|+.+.+.
T Consensus        65 ---~-------~~~~d~vV~sp~i~~~~p~~~   86 (448)
T PRK03803         65 ---L-------LVQASEIIISPGLALDTPALR   86 (448)
T ss_pred             ---H-------hcCCCEEEECCCCCCCCHHHH
Confidence               0       124799999999988766543

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=91.95  E-value=0.27  Score=46.99  Aligned_cols=41  Identities=22%  Similarity=0.413  Sum_probs=34.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcccccc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL  110 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~~~  110 (352)
                      ...+|+|||+|..|+-+|..|.+.| .+++|++.++++-.|.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI   61 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI   61 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence            4568999999999999999999665 6788999888775544

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=91.90  E-value=1.8  Score=39.84  Aligned_cols=33  Identities=30%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ...++|||+|..|+-.|..|+..|.+|.+++..
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQE   37 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQE   37 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccc
Confidence            356899999999999999999999999998755

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.87  E-value=0.2  Score=50.44  Aligned_cols=51  Identities=20%  Similarity=0.180  Sum_probs=33.8

Q ss_pred             CCcEEeCCCCCCC------CCCEEEecccccc--CCc-cCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRTR------MPGIFAIGDVAAF--PLK-MYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t~------~~~Iya~GD~a~~--~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|++.+|.+.+|+      +||+||+|+|+..  .+. ..+..    ....|.-.|+.|++++.
T Consensus       352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggn----sl~~~~v~Gr~Ag~~aa  411 (577)
T PRK06069        352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSN----STAECLVWGRIAGEQAA  411 (577)
T ss_pred             CCCceECCCCcCcCCCCCEeCCeEeccccccccccccccchhh----HHHHHHHHHHHHHHHHH
Confidence            5899999999998      9999999999752  111 11111    23345566666666654

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.82  E-value=0.38  Score=50.46  Aligned_cols=76  Identities=13%  Similarity=0.120  Sum_probs=55.3

Q ss_pred             CCeEEEECCChHHHHH-HHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           71 AKKVVVVGGGYIGMEV-AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~-A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      -+++.|+|-|-+|+.. |..|.++|.+|++.+....       +.    . +.|++.|++++.+...        .   .
T Consensus         4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~-------~~----~-~~L~~~gi~~~~g~~~--------~---~   60 (809)
T PRK14573          4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG-------KT----V-EKLKAKGARFFLGHQE--------E---H   60 (809)
T ss_pred             cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCH--------H---H
Confidence            3579999999999998 9999999999999775431       11    2 2367789998765311        0   0


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                        +     -.+|+||+++|..|+.+.+
T Consensus        61 --~-----~~~d~vV~SpgI~~~~p~~   80 (809)
T PRK14573         61 --V-----PEDAVVVYSSSISKDNVEY   80 (809)
T ss_pred             --c-----CCCCEEEECCCcCCCCHHH
Confidence              0     1379999999999876644

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.73  E-value=0.85  Score=41.38  Aligned_cols=34  Identities=41%  Similarity=0.584  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      +.+|+|+|||.+|.+.|.....+|.+||+++.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            3589999999999999999999999999999874

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.72  E-value=0.71  Score=35.40  Aligned_cols=47  Identities=28%  Similarity=0.417  Sum_probs=36.1

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 018652           74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  133 (352)
Q Consensus        74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~  133 (352)
                      ++|+|.|..|.+++..|.+.+.+|+++++.+..             .+.+++.|++++.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~-------------~~~~~~~~~~~i~g   47 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER-------------VEELREEGVEVIYG   47 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH-------------HHHHHHTTSEEEES
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH-------------HHHHHhcccccccc
Confidence            689999999999999999977799999876421             24456777777654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.72  E-value=0.32  Score=44.24  Aligned_cols=36  Identities=31%  Similarity=0.376  Sum_probs=32.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      ++|.|||+|..|..+|..|++.|.+|+++++++..+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~   37 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQL   37 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHH
Confidence            579999999999999999999999999998876543

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=91.65  E-value=0.24  Score=50.49  Aligned_cols=25  Identities=28%  Similarity=0.638  Sum_probs=22.8

Q ss_pred             CCcEEeCCCCCC-CCCCEEEeccccc
Q 018652          185 VGGIQVDGQFRT-RMPGIFAIGDVAA  209 (352)
Q Consensus       185 ~g~i~vd~~~~t-~~~~Iya~GD~a~  209 (352)
                      -|||.||.+.+| ++||+||+|+|+.
T Consensus       372 mGGi~vd~~~~t~~I~GLyAaGE~a~  397 (657)
T PRK08626        372 MGGIRTNPTGESYGLKGLFSAGEAAC  397 (657)
T ss_pred             cCCceECCCCCCcccCCEEecccccc
Confidence            489999999999 6999999999975

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.64  E-value=0.27  Score=50.08  Aligned_cols=25  Identities=36%  Similarity=0.724  Sum_probs=23.2

Q ss_pred             CcEEeCCCCCCCCCCEEEecccccc
Q 018652          186 GGIQVDGQFRTRMPGIFAIGDVAAF  210 (352)
Q Consensus       186 g~i~vd~~~~t~~~~Iya~GD~a~~  210 (352)
                      |||.||.+.+|++||+||+|+|+..
T Consensus       407 GGi~vd~~~~T~i~GLyAaGE~~~g  431 (640)
T PRK07573        407 GGLWVDYNLMSTIPGLFVIGEANFS  431 (640)
T ss_pred             CCEEECCCCccccCCEEECcccccc
Confidence            8999999999999999999999753

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=91.57  E-value=0.25  Score=45.34  Aligned_cols=89  Identities=16%  Similarity=0.275  Sum_probs=54.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  151 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~  151 (352)
                      .+|.|+|+|..|.-+|..|++.|++|++..|++...         +.+...  +.+.++..+...-      +..  ..+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~---------~~i~~~--~~N~~yLp~i~lp------~~l--~at   62 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIV---------AEINET--RENPKYLPGILLP------PNL--KAT   62 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHH---------HHHHhc--CcCccccCCccCC------ccc--ccc
Confidence            579999999999999999999999999987765322         222222  2344554432110      000  111


Q ss_pred             cCCCCEEE-cCEEEEccCCCCCchhhhhc
Q 018652          152 LEDGSTID-ADTIVIGIGAKPTVSPFERV  179 (352)
Q Consensus       152 ~~~g~~i~-~D~vi~a~G~~p~~~~~~~~  179 (352)
                      .+-.+.++ +|.|+++++...-.+.++++
T Consensus        63 ~Dl~~a~~~ad~iv~avPs~~~r~v~~~l   91 (329)
T COG0240          63 TDLAEALDGADIIVIAVPSQALREVLRQL   91 (329)
T ss_pred             cCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence            11122344 89999998876554444443

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.38  E-value=0.26  Score=39.28  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=28.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~  103 (352)
                      .++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4789999999999999999999997 68888765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=91.33  E-value=0.27  Score=49.68  Aligned_cols=19  Identities=26%  Similarity=0.307  Sum_probs=16.7

Q ss_pred             CCCCCCCCCEEEecccccc
Q 018652          192 GQFRTRMPGIFAIGDVAAF  210 (352)
Q Consensus       192 ~~~~t~~~~Iya~GD~a~~  210 (352)
                      .+.+|++|++||+|||+..
T Consensus       400 ~~~~T~i~gLyA~Ge~~~~  418 (614)
T TIGR02061       400 YNRMTTVEGLFTCGDGVGA  418 (614)
T ss_pred             cCCccccCCEEeceecccC
Confidence            7788999999999999753

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK04148 hypothetical protein; Provisional

Probab=91.31  E-value=0.8  Score=36.40  Aligned_cols=35  Identities=29%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      +++++++||-| .|.++|..|++.|.+|+.++.++.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            45789999999 999999999999999999987653

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=91.21  E-value=0.23  Score=45.32  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+.|-|||+|..|.|.|+.++++|..|.+.+.++
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp   36 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP   36 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence            3568899999999999999999999999998764

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=91.12  E-value=0.29  Score=47.35  Aligned_cols=38  Identities=11%  Similarity=-0.079  Sum_probs=33.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~  109 (352)
                      -.|+|||+|..++-+|..|++.|.+|.++++++..-.+
T Consensus         5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~   42 (443)
T PTZ00363          5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGE   42 (443)
T ss_pred             ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcc
Confidence            46999999999999999999999999999998765443

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.03  E-value=0.48  Score=42.85  Aligned_cols=94  Identities=20%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  150 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v  150 (352)
                      ..+|+|+|.|.+|--+|..|++.|..+.++.+...-.          .+.. -.+.|+.....   ....          
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~----------~~~~-a~~lgv~d~~~---~~~~----------   58 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAA----------TLKA-ALELGVIDELT---VAGL----------   58 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHH----------HHHH-HhhcCcccccc---cchh----------
Confidence            4689999999999999999999999999887654211          1111 12233322110   0000          


Q ss_pred             EcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeC
Q 018652          151 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD  191 (352)
Q Consensus       151 ~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd  191 (352)
                         ....-.+|+||+|++...-.+.+++..-....|.+++|
T Consensus        59 ---~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~D   96 (279)
T COG0287          59 ---AEAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTD   96 (279)
T ss_pred             ---hhhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEe
Confidence               00124589999999988766667665433334555555

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=90.75  E-value=0.38  Score=42.07  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++++|+|+|..|..+|..|.+.|.+|+++++.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            468999999999999999999999999998765

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=90.73  E-value=5.7  Score=38.68  Aligned_cols=58  Identities=17%  Similarity=0.342  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCC---CcEEEEEc-CCCC--EE---EcCEEEEccCCCC
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL-EDGS--TI---DADTIVIGIGAKP  171 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~---~~~~~v~~-~~g~--~i---~~D~vi~a~G~~p  171 (352)
                      .+..-+.+.|+++||+|.++++|+.++-..+   ..+..+.+ .+|+  .+   +-|+|++..|..-
T Consensus       208 Sii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t  274 (500)
T PF06100_consen  208 SIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT  274 (500)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence            3445566788999999999999999864322   22333333 3443  22   3788888888654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=90.61  E-value=0.49  Score=40.54  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~  103 (352)
                      ..++|+|+|.|-.|.++|..|++.|. +++++++.
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46789999999999999999999998 59998877

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.58  E-value=0.45  Score=47.82  Aligned_cols=51  Identities=22%  Similarity=0.250  Sum_probs=34.0

Q ss_pred             CCcEEeCCCCCC------CCCCEEEecccccc--CCc-cCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRT------RMPGIFAIGDVAAF--PLK-MYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t------~~~~Iya~GD~a~~--~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|+|.+|.+.+|      ++||+||+|+|+..  .+. .++..    ....|.-.|+.|++++.
T Consensus       351 ~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggn----sl~~~~v~G~~Ag~~aa  410 (575)
T PRK05945        351 MGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSN----SLLECVVYGRRTGAAIA  410 (575)
T ss_pred             CCCeeECCCceeccCCCCccCCeEeeeccccccccccccccch----hHHHHHHHHHHHHHHHH
Confidence            489999988886      69999999999752  111 11111    33446666777777665

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=90.54  E-value=0.5  Score=40.46  Aligned_cols=91  Identities=20%  Similarity=0.214  Sum_probs=57.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  151 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~  151 (352)
                      +++.|+|.|.+|--+|..|++.|++|++-.++.        ++-.....+.   .+..         ++..+        
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~--------~~~~~a~a~~---l~~~---------i~~~~--------   53 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG--------PKALAAAAAA---LGPL---------ITGGS--------   53 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC--------hhHHHHHHHh---hccc---------cccCC--------
Confidence            468899999999999999999999999986543        1111122222   2222         11110        


Q ss_pred             cCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCC
Q 018652          152 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG  192 (352)
Q Consensus       152 ~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~  192 (352)
                      ..+ -.-.+|.|++++++....+.+++..-.. .|.|++|.
T Consensus        54 ~~d-A~~~aDVVvLAVP~~a~~~v~~~l~~~~-~~KIvID~   92 (211)
T COG2085          54 NED-AAALADVVVLAVPFEAIPDVLAELRDAL-GGKIVIDA   92 (211)
T ss_pred             hHH-HHhcCCEEEEeccHHHHHhHHHHHHHHh-CCeEEEec
Confidence            000 1245999999999987766666543222 26788886

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.54  E-value=0.36  Score=44.39  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ++|.|||+|.+|..+|..|++.|.+|+++++.+..
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~   37 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAA   37 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHH
Confidence            47999999999999999999999999999887643

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=90.45  E-value=0.5  Score=40.82  Aligned_cols=74  Identities=24%  Similarity=0.427  Sum_probs=50.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+++|+|||||-.|.-=|..|.+.|.+|+++.+..       .++    +..+..+.+++++.    ..++         
T Consensus        11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-------~~e----l~~~~~~~~i~~~~----~~~~---------   66 (210)
T COG1648          11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-------EPE----LKALIEEGKIKWIE----REFD---------   66 (210)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-------cHH----HHHHHHhcCcchhh----cccC---------
Confidence            68899999999999999999999999999997642       233    34444444544432    1111         


Q ss_pred             EEcCCCCEEEcCEEEEccCCCC
Q 018652          150 VKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                          ......+++|+.||+-..
T Consensus        67 ----~~~~~~~~lviaAt~d~~   84 (210)
T COG1648          67 ----AEDLDDAFLVIAATDDEE   84 (210)
T ss_pred             ----hhhhcCceEEEEeCCCHH
Confidence                111233999999998644

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=90.41  E-value=4.9  Score=37.13  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=28.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  101 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~  101 (352)
                      ..-..+|||||-.|+.+|...+..|.+|.+++
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lD   49 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLD   49 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEe
Confidence            34579999999999999999999999998865

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.39  E-value=0.39  Score=48.76  Aligned_cols=51  Identities=20%  Similarity=0.268  Sum_probs=32.8

Q ss_pred             CCcEEeCCCC-CCCCCCEEEeccccccCCc--cCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQF-RTRMPGIFAIGDVAAFPLK--MYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~-~t~~~~Iya~GD~a~~~~~--~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|||.+|... +|++||+||+|+|+.....  .++..    ....|.-.|+.|++++.
T Consensus       391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gn----sl~~a~v~Gr~Ag~~aa  444 (626)
T PRK07803        391 MGGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGN----SLSDLLVFGRRAGLGAA  444 (626)
T ss_pred             cCCEEEcCCCCeeecCCeeEccccccccCcCccccch----hHHHHHHHHHHHHHHHH
Confidence            4899999875 5899999999999753211  11111    23345666666666654

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.03  E-value=0.85  Score=44.14  Aligned_cols=79  Identities=20%  Similarity=0.243  Sum_probs=53.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .++++.|+|-|-+|+..+..|++.|.+|+..+....      .+.     .+.+++ |+.+..+...        ..   
T Consensus         5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~------~~~-----~~~l~~-g~~~~~~~~~--------~~---   61 (438)
T PRK03806          5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT------PPG-----LDKLPE-NVERHTGSLN--------DE---   61 (438)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC------chh-----HHHHhc-CCEEEeCCCC--------HH---
Confidence            367899999999999999999999999999876531      111     122433 7877653210        00   


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                            ..-++|++|++.|..++.+.+.
T Consensus        62 ------~~~~~d~vv~spgi~~~~~~~~   83 (438)
T PRK03806         62 ------WLLAADLIVASPGIALAHPSLS   83 (438)
T ss_pred             ------HhcCCCEEEECCCCCCCCHHHH
Confidence                  0124688999999988765543

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=90.03  E-value=1.5  Score=43.01  Aligned_cols=68  Identities=24%  Similarity=0.420  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCCCchhhhhcCCc
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN  182 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  182 (352)
                      ..+...+.+.+++.|++++.+++|++++..+++.+ .+.   +.+|+  ++.+|.||+|+|.-.. .+++.+|+.
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~  250 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP  250 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence            35677777888889999999999999986444332 232   23342  6899999999997653 456666654

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.98  E-value=0.55  Score=47.27  Aligned_cols=54  Identities=20%  Similarity=0.269  Sum_probs=32.8

Q ss_pred             CCcEEeCCCCC------CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFR------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~------t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -||+.+|...+      |++||+||+|+|+.....-.++.. -.....+.-.|+.|++++.
T Consensus       356 ~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlg-gnsl~~~~v~G~~Ag~~aa  415 (583)
T PRK08205        356 MGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLG-TNSLLDINVFGRRAGIAAA  415 (583)
T ss_pred             CCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCc-hhhHHHHHHHHHHHHHHHH
Confidence            48899998877      589999999999752111000110 1133345666666666664

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=89.95  E-value=1.3  Score=43.57  Aligned_cols=56  Identities=20%  Similarity=0.404  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-----CEEEcCEEEEccCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGA  169 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-----~~i~~D~vi~a~G~  169 (352)
                      ..+.+.+.+.+++.|.++++++.|++|...+ +....+.+.++     +++.+|.||+++..
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~  292 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPP  292 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence            3577788888999999999999999998643 44445555454     57899999999875

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=89.91  E-value=0.59  Score=43.60  Aligned_cols=89  Identities=19%  Similarity=0.222  Sum_probs=52.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCC--------CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK--------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  144 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g--------~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~  144 (352)
                      +|.|||+|..|..+|..|++.+        .+|+++.++..+    .++.+.+.+.+.  ..+.++.++...     . +
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~----~~~~~~~~in~~--~~n~~ylpgi~L-----p-~   68 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEI----EGRNLTEIINTT--HENVKYLPGIKL-----P-A   68 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecccc----CCHHHHHHHHhc--CCCccccCCCcC-----C-C
Confidence            5899999999999999999988        899998875422    234444444443  223444433211     0 0


Q ss_pred             CcEEEEEcCC-CCE-EEcCEEEEccCCCCCchhh
Q 018652          145 GRVAAVKLED-GST-IDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       145 ~~~~~v~~~~-g~~-i~~D~vi~a~G~~p~~~~~  176 (352)
                      . + .. +.| .+. -.+|.+|+++....-.+.+
T Consensus        69 ~-i-~a-t~dl~eal~~ADiIIlAVPs~~i~~vl   99 (342)
T TIGR03376        69 N-L-VA-VPDLVEAAKGADILVFVIPHQFLEGIC   99 (342)
T ss_pred             C-e-EE-ECCHHHHHhcCCEEEEECChHHHHHHH
Confidence            0 0 11 112 122 3589999998765443333

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=89.81  E-value=1.9  Score=42.51  Aligned_cols=67  Identities=22%  Similarity=0.478  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhCC-cEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCCCchhhhhcCCc
Q 018652          114 SLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN  182 (352)
Q Consensus       114 ~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  182 (352)
                      .+...+.+.+++.| +++++++.|++++..+++.+ .+.   +.+|+  ++.++.||+|+|.-.. .+++.+|+.
T Consensus       184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~  256 (494)
T PRK05257        184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP  256 (494)
T ss_pred             HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence            55677777788876 99999999999986555533 233   33454  6899999999997653 566666654

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=89.80  E-value=0.5  Score=47.39  Aligned_cols=53  Identities=17%  Similarity=0.210  Sum_probs=0.0

Q ss_pred             CcEEeCCCCC---------CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          186 GGIQVDGQFR---------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       186 g~i~vd~~~~---------t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      |+|.+|...+         |++||+||+|+|+.....-.++.... ....|.-.|+.|++++.
T Consensus       332 GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggn-sl~~a~vfGr~Ag~~aa  393 (565)
T TIGR01816       332 GGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTN-SLLDLVVFGRAAGLSAA  393 (565)
T ss_pred             CCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhh-HHHHHHHHHHHHHHHHH

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.78  E-value=0.34  Score=46.10  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=28.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      +|.|||.|++|+-+|..++. |.+|+++++++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            58999999999999988875 999999998753

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.76  E-value=0.64  Score=44.43  Aligned_cols=36  Identities=22%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+++|+|+|.|.+|..+|..++..|.+|+++++.+
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            468999999999999999999999999998877654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=89.74  E-value=0.46  Score=47.77  Aligned_cols=34  Identities=29%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ...|+|||+|..|+..|..+++.|.+|.|+++..
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~   42 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEP   42 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            3479999999999999999999999999999764

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=89.72  E-value=1.9  Score=38.99  Aligned_cols=50  Identities=22%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcccccccCHHHHHHHHHHHHhCCc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  128 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV  128 (352)
                      .+++++|+|+|-.+--++..|.+.| .+|+|+.|..         +-.+.+.+.+.+.+.
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~---------~ra~~La~~~~~~~~  175 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR---------ERAEELADLFGELGA  175 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH---------HHHHHHHHHhhhccc
Confidence            3689999999999999999999999 5799998754         223455566666554

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=89.70  E-value=5.8  Score=38.30  Aligned_cols=58  Identities=22%  Similarity=0.373  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ++.+.+-+...=.|-.+.+++.|.++..++++....|.. +|+.+.|+.||....+-|+
T Consensus       233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~dpsy~p~  290 (438)
T PF00996_consen  233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGDPSYLPE  290 (438)
T ss_dssp             HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEEGGGBGC
T ss_pred             cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEECCccCcc
Confidence            666667677677889999999999998766787777765 8889999999988877774

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=89.70  E-value=1.6  Score=42.78  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecC--CC--cEEEEEcCCC---CEEEcCEEEEccCCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK  170 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~--~~--~~~~v~~~~g---~~i~~D~vi~a~G~~  170 (352)
                      ..+.+.+.+.+++.|.+++++++|++|..++  ++  .+..+.+.+|   +.+.+|.||++++..
T Consensus       219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            3455667788899999999999999998643  22  2556666544   468999999999853

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=89.63  E-value=0.49  Score=45.52  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..++|||+|..|+.+|..+++.|.+|++++++
T Consensus         3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~   34 (422)
T PRK05329          3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG   34 (422)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence            46899999999999999999999999999865

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=89.63  E-value=0.81  Score=41.72  Aligned_cols=37  Identities=32%  Similarity=0.390  Sum_probs=32.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      -++|.|||+|.+|..+|..|+..|.+|+++++++..+
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   40 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAAL   40 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence            4689999999999999999999999999998876443

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=89.61  E-value=1.8  Score=42.46  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+.+++|+|+|.+|+..+..+..+|.+|+++++++
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34699999999999999999999999998887654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.48  E-value=1  Score=44.37  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|+|-|-+|+.+|..|.++|.+|++.+...
T Consensus         6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            36789999999999999999999999999887543

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.41  E-value=1  Score=43.68  Aligned_cols=76  Identities=24%  Similarity=0.392  Sum_probs=52.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCC-eEEEEEecCCCcEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA-SIKNLEAGSDGRVA  148 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~-~v~~i~~~~~~~~~  148 (352)
                      +++.|+|-|-+|+..+..|.+.  |.+|++.+..+.      .+ .    .+.|++ |+++..+. ...           
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~------~~-~----~~~l~~-g~~~~~g~~~~~-----------   64 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET------PP-G----QEQLPE-DVELHSGGWNLE-----------   64 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC------ch-h----HHHhhc-CCEEEeCCCChH-----------
Confidence            7899999999999999999887  578998776542      11 1    122444 88887542 100           


Q ss_pred             EEEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          149 AVKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       149 ~v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                      .+       -.+|+||+++|..|+.+.++
T Consensus        65 ~~-------~~~d~vV~SpgI~~~~p~~~   86 (438)
T PRK04663         65 WL-------LEADLVVTNPGIALATPEIQ   86 (438)
T ss_pred             Hh-------ccCCEEEECCCCCCCCHHHH
Confidence            01       24799999999988766543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=89.27  E-value=0.52  Score=42.90  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=31.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ++|.|||+|..|..+|..|++.|.+|+++++++..
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~   38 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEI   38 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            68999999999999999999999999999877643

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=89.25  E-value=0.64  Score=42.29  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|+|.|.+|..+|..|...|.+|+++.|.+
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999999999999999999999999988754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.23  E-value=0.52  Score=47.51  Aligned_cols=54  Identities=20%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             CCcEEeCCCCC----------CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFR----------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~----------t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -||+.+|...+          |++||+||+|+|+.....-.++.. -.....|.-.|+.|++++.
T Consensus       357 ~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlg-gnsl~~a~v~Gr~Ag~~aa  420 (588)
T PRK08958        357 MGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLG-GNSLLDLVVFGRAAGLHLQ  420 (588)
T ss_pred             CCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccch-hhHHHHHHHHHHHHHHHHH
Confidence            47888887766          569999999999752111000110 1133346666666666654

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.22  E-value=0.6  Score=47.12  Aligned_cols=54  Identities=15%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             CCcEEeCCCCCC---------CCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRT---------RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t---------~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|||.+|.+.+|         ++||+||+|+|+.....-.++.. -.....|.-.|+.|++++.
T Consensus       361 ~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~-gnsl~~~~v~Gr~Ag~~aa  423 (591)
T PRK07057        361 MGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLG-TNSLLDLVVFGRAAGNHIV  423 (591)
T ss_pred             CCCeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccch-hhHHHHHHHHHHHHHHHHH
Confidence            489999988887         68999999999752111001111 1134456777777777765

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=89.18  E-value=0.55  Score=42.83  Aligned_cols=31  Identities=29%  Similarity=0.368  Sum_probs=29.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ++.|+|+|.+|.-+|..|++.|.+|+++.|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            6899999999999999999999999999874

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=89.13  E-value=1.3  Score=42.12  Aligned_cols=53  Identities=23%  Similarity=0.473  Sum_probs=39.3

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      +.+.+.+++.|.+++++++|++|+..+++ +..+...+|+.+.+|.||++++..
T Consensus       201 ~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~g~~~~~d~vi~a~p~~  253 (419)
T TIGR03467       201 EPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSGGETLPADAVVLAVPPR  253 (419)
T ss_pred             HHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecCCccccCCEEEEcCCHH
Confidence            44667778889999999999999875443 222222467789999999987743

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.09  E-value=0.66  Score=42.02  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      ++|.|||+|.+|..+|..+++.|.+|+++++++..+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~   39 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAV   39 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHH
Confidence            579999999999999999999999999998776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		6e-29
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		7e-29
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		1e-26
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		2e-26
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		9e-18
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		9e-18
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		1e-16
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		2e-15
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		9e-14
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		2e-13
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		2e-13
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		2e-13
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		2e-13
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		2e-10
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		2e-10
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		9e-10
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		9e-10
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		2e-08
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		4e-08
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		4e-08
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		4e-08
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		4e-08
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		4e-08
1xhc_A	367	Nadh Oxidase /nitrite Reductase From Pyrococcus Fur		5e-08
4gcm_A	312	Crystal Structure Of A Thioredoxine Reductase (Trxb		8e-08
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		1e-07
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		1e-07
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		1e-07
2v3a_A	384	Crystal Structure Of Rubredoxin Reductase From Pseu		2e-07
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		2e-07
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		2e-07
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		3e-07
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		4e-07
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		4e-07
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		4e-07
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		5e-07
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		6e-07
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		6e-07
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		6e-07
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		7e-07
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		7e-07
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		7e-07
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		2e-06
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		2e-06
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		2e-06
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		2e-06
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		2e-06
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		4e-06
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		1e-05
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		2e-05
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		2e-05
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		2e-05
3ab1_A	360	Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas		6e-05
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		8e-05
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		9e-05
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		9e-05
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		1e-04
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		1e-04
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		1e-04
3l8k_A	466	Crystal Structure Of A Dihydrolipoyl Dehydrogenase		2e-04
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		2e-04
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		2e-04
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		2e-04
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		2e-04
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		2e-04
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		3e-04
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		3e-04
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		8e-04
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		8e-04

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 129/255 (50%), Gaps = 5/255 (1%)
Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG--GYLPGVHYIRDVADADAL 64
           VT+I+ ++Q +I + G+ L Y  L++ATG      P   G  G      Y+R + DA+ +
Sbjct: 82  VTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECI 141
Query: 65  ISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
              L    +       YIG+EVAA A+   +  T++     +L+R+  P ++  YE L++
Sbjct: 142 RRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHR 201
Query: 125 QNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 183
           + GV    G  +   E  +D  +V AV  EDG+ + AD ++ GIG  P        GL  
Sbjct: 202 EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQV 261
Query: 184 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 243
              GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+  I A+L  + 
Sbjct: 262 D-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAAILCGKV 319
Query: 244 HTYDYLPYFYSRVFE 258
              +  P+F+S  +E
Sbjct: 320 PRDEAAPWFWSDQYE 334

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 129/255 (50%), Gaps = 5/255 (1%)
Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG--GYLPGVHYIRDVADADAL 64
           VT+I+ ++Q +I + G+ L Y  L++ATG      P   G  G      Y+R + DA+ +
Sbjct: 83  VTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECI 142
Query: 65  ISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
              L    +       YIG+EVAA A+   +  T++     +L+R+  P ++  YE L++
Sbjct: 143 RRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHR 202
Query: 125 QNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 183
           + GV    G  +   E  +D  +V AV  EDG+ + AD ++ GIG  P        GL  
Sbjct: 203 EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQV 262
Query: 184 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 243
              GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+  I A+L  + 
Sbjct: 263 D-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAAILCGKV 320
Query: 244 HTYDYLPYFYSRVFE 258
              +  P+F+S  +E
Sbjct: 321 PRDEAAPWFWSDQYE 335

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 122/253 (48%), Gaps = 4/253 (1%)
Query: 2   IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           +  D + SID E + L+  SG  ++YG L++ATG   +R  +     LP V Y+R + ++
Sbjct: 74  LISDRMVSIDREGRKLLLASGTAIEYGHLVLATGAR-NRMLDVPNASLPDVLYLRTLDES 132
Query: 62  DALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 121
           + L   +   K        +IG+E AA A    L+  ++     ++ R+ TP ++  +  
Sbjct: 133 EVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHD 192
Query: 122 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 181
            +   G++   G     + A  D RV  V L DG+T+  D +V+G+G  P V        
Sbjct: 193 RHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDGNTLPCDLVVVGVGVIPNVE-IAAAAG 250
Query: 182 NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 241
             +  GI VD Q  T  P I AIGD A F    +  T RVE V +A   A+ C+ A L+ 
Sbjct: 251 LPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQAR-CVAARLTG 309
Query: 242 QTHTYDYLPYFYS 254
               YD  P+F+S
Sbjct: 310 DAKPYDGYPWFWS 322

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 141/297 (47%), Gaps = 16/297 (5%)
Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
           V S+D    T+    G  ++YG LI ATG    R    +G  L GVH +R   DAD L++
Sbjct: 88  VVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRL-SCVGADLAGVHAVRTKEDADRLMA 146
Query: 67  SLEK-AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 125
            L+  AK        YIG+E AA    + ++ T++     +L R+   +L++ Y+  ++ 
Sbjct: 147 ELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRA 206
Query: 126 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV 185
           +GV    GA++  +E G   +V  V+++DGS I AD +++GIG  P V      G +   
Sbjct: 207 HGVDLRTGAAMDCIE-GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG- 264
Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA-RVEHVDHARQSAQHCIKALLSAQTH 244
            G+ VD   RT +  ++AIGD AA      D    R+E V +A   A    K +  A   
Sbjct: 265 NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV- 323
Query: 245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATF---WIDSGKL 298
            Y   P+F+S  ++ +        Q  G + G    +   DP   +F   ++  GK+
Sbjct: 324 PYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKV 373

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 10/247 (4%)
Query: 9   SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 68
           S D +  T+  + G+ L YG+L++ATG      P   G  +P VH +R + DA  + + L
Sbjct: 84  SFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMP-VHTLRTLEDARRIQAGL 142
Query: 69  EKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 128
               +        IG+E+AA A    +  +++  +  L+ R    +LA    + +   GV
Sbjct: 143 RPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGV 202
Query: 129 KFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG 187
                      E    G V   V L+DG+ I AD +V+GIG     +     GL     G
Sbjct: 203 DL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACD-DG 254
Query: 188 IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD 247
           I VD   RT  P ++A+GDV      +  R  R+E   +A+       + L+      Y 
Sbjct: 255 IFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAPGYA 314
Query: 248 YLPYFYS 254
            LP+++S
Sbjct: 315 ELPWYFS 321

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 10/247 (4%)
Query: 9   SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 68
           S D +  T+  + G+ L YG+L++ATG      P   G  +P VH +R + DA  + + L
Sbjct: 84  SFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMP-VHTLRTLEDARRIQAGL 142
Query: 69  EKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 128
               +        IG+E+AA A    +  +++  +  L+ R    +LA    + +   GV
Sbjct: 143 RPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGV 202
Query: 129 KFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG 187
                      E    G V   V L+DG+ I AD +V+GIG     +     GL     G
Sbjct: 203 DL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACD-DG 254
Query: 188 IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD 247
           I VD   RT  P ++A+GDV      +  R  R+E   +A+       + L+      Y 
Sbjct: 255 IFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAPGYA 314
Query: 248 YLPYFYS 254
            LP+++S
Sbjct: 315 ELPWYWS 321

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 4/217 (1%)
Query: 1   MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 60
           M+    VT++D++ +T+  + G  L   ++++ATG  A R     G  LPGV  +R   D
Sbjct: 74  MLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA-RTMALPGSQLPGVVTLRTYGD 132
Query: 61  ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
              L  S   A +        IG EVA  A    L  TI+   + LL R+    +     
Sbjct: 133 VQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLR 192
Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 180
            L  + GV+   G  +       +G++  V   DG +  AD+ +I +GA+P      + G
Sbjct: 193 GLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALICVGAEPADQLARQAG 250
Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 217
           L    G I VD    T   G+FA+GDVA++PL+   R
Sbjct: 251 LACDRGVI-VDHCGATLAKGVFAVGDVASWPLRAGGR 286

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 7/204 (3%)
Query: 12  IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-- 69
           +E + L T   + LKY  L++A G  A+R P + G  L GV  + ++ +A+ +  ++   
Sbjct: 99  VEIENLRTGERRTLKYDKLVLALGSKANRPPVE-GMDLAGVTPVTNLDEAEFVQHAISAG 157
Query: 70  KAKKXXXXXXXYIGMEVAAA-AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 128
           +  K       +IG+E+A + A  W +DTT++   + ++    + SL+Q      ++N V
Sbjct: 158 EVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDV 217
Query: 129 KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGG 187
               G  +  LE G +G+VA V + D  T+DAD +++  G  P        GL     G 
Sbjct: 218 VVHTGEKVVRLE-GENGKVARV-ITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGA 275
Query: 188 IQVDGQFRTRMPGIFAIGDVAAFP 211
           I VD + RT  P IFA GD    P
Sbjct: 276 IIVDTRMRTSDPDIFAGGDCVTIP 299

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 34/295 (11%)
Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADADA 63
           V  +D+    +  N G  + Y   ++ATG T       ++ G  +       R + D  +
Sbjct: 131 VVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRS 190
Query: 64  LISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--FPENHLLQRLFTPSLAQR 118
           L     + K        ++G E+A A +G K   L T +I  FPE   + ++    L+  
Sbjct: 191 LEKISREVKSITIIGGGFLGSELACA-LGRKARALGTEVIQLFPEKGNMGKILPEYLSNW 249
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
             +  ++ GVK +  A ++++   S G++  +KL+DG  ++ D IV  +G +P V   + 
Sbjct: 250 TMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKT 307
Query: 179 VGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRTARVEHVDHARQSAQHCI 235
            GL  +S  GG +V+ + + R   I+  GD A F  +K+  R  RVEH DHA       +
Sbjct: 308 GGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR--RVEHHDHA------VV 358
Query: 236 KALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIAT 290
              L+ +  T    PY++  +F          W   G +VG  + IG  D  + T
Sbjct: 359 SGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG-YVAIGLVDSSLPT 402

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 123/281 (43%), Gaps = 33/281 (11%)
Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADADA 63
           V  +D+    +  N G  + +   ++ATG T       ++ G  +       R + D  A
Sbjct: 131 VVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRA 190
Query: 64  LISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIFPENHLLQRLFTPSLAQR 118
           L     + K        ++G E+A A +G K     ++   +FPE   + ++    L+  
Sbjct: 191 LEKISREVKSITVIGGGFLGSELACA-LGRKSQASGIEVIQLFPEKGNMGKILPQYLSNW 249
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
             +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D IV  +G +P V   + 
Sbjct: 250 TMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETDHIVTAVGLEPNVELAKT 307
Query: 179 VGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRTARVEHVDHARQSAQHCI 235
            GL  +S  GG +V+ + + R   I+  GD A F  +K+  R  RVEH DHA       +
Sbjct: 308 GGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR--RVEHHDHA------VV 358
Query: 236 KALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 276
              L+ +  T    PY++  +F          W   G +VG
Sbjct: 359 SGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 389

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 123/281 (43%), Gaps = 33/281 (11%)
Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADADA 63
           V  +D+    +  N G  + +   ++ATG T       ++ G  +       R + D  A
Sbjct: 155 VVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRA 214
Query: 64  LISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIFPENHLLQRLFTPSLAQR 118
           L     + K        ++G E+A A +G K     ++   +FPE   + ++    L+  
Sbjct: 215 LEKISREVKSITVIGGGFLGSELACA-LGRKSQASGIEVIQLFPEKGNMGKILPQYLSNW 273
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
             +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D IV  +G +P V   + 
Sbjct: 274 TMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETDHIVTAVGLEPNVELAKT 331
Query: 179 VGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRTARVEHVDHARQSAQHCI 235
            GL  +S  GG +V+ + + R   I+  GD A F  +K+  R  RVEH DHA       +
Sbjct: 332 GGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR--RVEHHDHA------VV 382
Query: 236 KALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 276
              L+ +  T    PY++  +F          W   G +VG
Sbjct: 383 SGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 413

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 123/281 (43%), Gaps = 33/281 (11%)
Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADADA 63
           V  +D+    +  N G  + +   ++ATG T       ++ G  +       R + D  A
Sbjct: 150 VVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRA 209
Query: 64  LISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIFPENHLLQRLFTPSLAQR 118
           L     + K        ++G E+A A +G K     ++   +FPE   + ++    L+  
Sbjct: 210 LEKISREVKSITVIGGGFLGSELACA-LGRKSQASGIEVIQLFPEKGNMGKILPQYLSNW 268
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
             +  ++ GVK +  A ++++  G  G    +KL+DG  ++ D IV  +G +P V   + 
Sbjct: 269 TMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETDHIVTAVGLEPNVELAKT 326
Query: 179 VGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRTARVEHVDHARQSAQHCI 235
            GL  +S  GG +V+ + + R   I+  GD A F  +K+  R  RVEH DHA       +
Sbjct: 327 GGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR--RVEHHDHA------VV 377
Query: 236 KALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 276
              L+ +  T    PY++  +F          W   G +VG
Sbjct: 378 SGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 408

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 126/281 (44%), Gaps = 33/281 (11%)
Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADADA 63
           V  +D+    +  N G  + Y   ++ATG T       ++ G  +       R + D  +
Sbjct: 113 VVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRS 172
Query: 64  LISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--FPENHLLQRLFTPSLAQR 118
           L     + K        ++G E+A A +G K   L T +I  FPE   + ++    L+  
Sbjct: 173 LEKISREVKSITIIGGGFLGSELACA-LGRKARALGTEVIQLFPEKGNMGKILPEYLSNW 231
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
             +  ++ GVK +  A ++++   S G++  +KL+DG  ++ D IV  +G +P V   + 
Sbjct: 232 TMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKT 289
Query: 179 VGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRTARVEHVDHARQSAQHCI 235
            GL  +S  GG +V+ + + R   I+  GD A F  +K+  R  RVEH DHA       +
Sbjct: 290 GGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR--RVEHHDHA------VV 340
Query: 236 KALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 276
              L+ +  T    PY++  +F          W   G +VG
Sbjct: 341 SGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 371

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 89/214 (41%), Gaps = 20/214 (9%)
Query: 7   VTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG-----VHYIR 56
           VT++D E +T     LITN  K   Y  LI+ TG   +  P      +PG     V+  +
Sbjct: 81  VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP------IPGIDSSRVYLCK 134
Query: 57  DVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 116
           +  DA  L     KAK        YIG E+A A      +  +I     +L + F     
Sbjct: 135 NYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFT 194
Query: 117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 176
               + Y+ +GV  V G+ +   E   D  +   K  DG  I +D  ++ IG +P     
Sbjct: 195 DILAKDYEAHGVNLVLGSKVAAFEEVDDEIIT--KTLDGKEIKSDIAILCIGFRPNTELL 252
Query: 177 E-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 209
           + +V +  + G I  D    +    IFA GD AA
Sbjct: 253 KGKVAMLDN-GAIITDEYMHSSNRDIFAAGDSAA 285

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 20  NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXX 79
           +S +   + + I+ATG   SR  E     LP   +   + D+   ++  E  K       
Sbjct: 127 DSAQTYTFKNAIIATG---SRPIE-----LPNFKFSNRILDSTGALNLGEVPKSLVVIGG 178
Query: 80  XYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 139
            YIG+E+  A   +    TI+     +L   F   +A   ++  ++ GV+ V  A  K  
Sbjct: 179 GYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGA 237
Query: 140 EAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 195
           E   DG     +   +  TIDAD +++ +G +P       E++G+  ++ G I+VD Q R
Sbjct: 238 EEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 297
Query: 196 TRMPGIFAIGDVAAFP 211
           T +P IFAIGD+   P
Sbjct: 298 TSVPNIFAIGDIVPGP 313

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 27/224 (12%)
Query: 13  EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 72
           E++ L+  +G+ L+   +++ATG +A   P         V Y R V   +AL S  E  K
Sbjct: 116 ERKVLVEETGEELEARYILIATG-SAPLIPP-----WAQVDYERVVTSTEAL-SFPEVPK 168
Query: 73  KXXXXXXXYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSL----AQRYEQLYQQNG 127
           +        IG+E+    V W +L   +I  E   + R+  P++    ++  E+++++ G
Sbjct: 169 RLIVVGGGVIGLELG---VVWHRLGAEVIVLE--YMDRIL-PTMDLEVSRAAERVFKKQG 222
Query: 128 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNS-S 184
           +    G  +  +   + G  A V+LE G  ++AD +++ +G +P       E  GL++  
Sbjct: 223 LTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDE 280
Query: 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT----ARVEHV 224
            G I VD   RTR+P I+AIGDV   P+  +  +    A VEH+
Sbjct: 281 RGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHM 324

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 13/210 (6%)
Query: 7   VTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           VT +D EK+ +     K        Y  L++ATG      PE  G  L GVH ++ + DA
Sbjct: 116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDA 174
Query: 62  DALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 119
           + ++ +LE  K +         IG+E+A   V       +I   +H +  ++   +A+  
Sbjct: 175 ERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH-IGTIYDGDMAEYI 233
Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 179
            +   ++ ++ +   ++K  +     RV AV+ + G T  AD +++ +G KP     E  
Sbjct: 234 YKEADKHHIEILTNENVKAFKGNE--RVEAVETDKG-TYKADLVLVSVGVKPNTDFLEGT 290
Query: 180 GLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 208
            + ++  G I+V+   +T +  ++A GD A
Sbjct: 291 NIRTNHKGAIEVNAYMQTNVQDVYAAGDCA 320

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 13/210 (6%)
Query: 7   VTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           VT +D EK+ +     K        Y  L++ATG      PE  G  L GVH ++ + DA
Sbjct: 116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-XPEWEGRDLQGVHLLKTIPDA 174
Query: 62  DALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 119
           + ++ +LE  K +         IG+E A   V        I   +H +  ++    A+  
Sbjct: 175 ERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXIERNDH-IGTIYDGDXAEYI 233
Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 179
            +   ++ ++ +   ++K  +     RV AV+ + G T  AD +++ +G KP     E  
Sbjct: 234 YKEADKHHIEILTNENVKAFKGNE--RVEAVETDKG-TYKADLVLVSVGVKPNTDFLEGT 290
Query: 180 GLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 208
            + ++  G I+V+   +T +  ++A GD A
Sbjct: 291 NIRTNHKGAIEVNAYXQTNVQDVYAAGDCA 320

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 81  YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136
           YIG+E A A        T+I     P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 196
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 197 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 81  YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136
           YIG+E A A        T+I     P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 196
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 197 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 81  YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136
           YIG+E A A        T+I     P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 196
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 197 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 81  YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136
           YIG+E A A        T+I     P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 196
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 197 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 81  YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136
           YIG+E A A        T+I     P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 196
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 197 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238
             P +FA+GD         D    +    +AR+  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313

>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 126/297 (42%), Gaps = 37/297 (12%)
Query: 10  IDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI---RDVADADALIS 66
           ID  ++ +IT  G++  Y +L++ATG  A R P+     + G  Y+   R + DAD +  
Sbjct: 86  IDRGRKVVITEKGEV-PYDTLVLATGARA-REPQ-----IKGKEYLLTLRTIFDADRIKE 138
Query: 67  SLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 126
           S+E + +       +IG+E+A           +I      L       L+   + + ++ 
Sbjct: 139 SIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEET 196
Query: 127 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 186
           GVKF   + +  LEA  +G      L +   I+    +  IG  P V    R G+++  G
Sbjct: 197 GVKFFLNSEL--LEANEEG-----VLTNSGFIEGKVKICAIGIVPNVDLARRSGIHTGRG 249
Query: 187 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY 246
            I +D  FRT    ++AIGD A +       +  +     A       +  +L  +   Y
Sbjct: 250 -ILIDDNFRTSAKDVYAIGDCAEY-------SGIIAGTAKAAMEQARVLADILKGEPRRY 301
Query: 247 DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLV 303
           ++   F S VF++     K+     G+  GE    G +       + ++GK+ G +V
Sbjct: 302 NF--KFRSTVFKFG----KLQIAIIGNTKGE----GKWIEDNTKVFYENGKIIGAVV 348

>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 116 AQRY--EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIG 168
           AQR   ++ ++ + + F+   ++K++    DG+V +V L   +DGS  T +AD + I IG
Sbjct: 182 AQRILQDRAFKNDKIDFIWSHTLKSINE-KDGKVGSVTLTSTKDGSEETHEADGVFIYIG 240
Query: 169 AKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 207
            KP  +PF+ +G+ + VG I       T +PGIFA GDV
Sbjct: 241 XKPLTAPFKDLGITNDVGYIVTKDDXTTSVPGIFAAGDV 279

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 104 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 163
           N+L+ R F  ++ +   +    NG++ +   +   +   +DG    V  E G T+D D +
Sbjct: 223 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 281
Query: 164 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 207
           ++ IG  P  +  +   VG+  +  GG+QVD   RT +P I+AIGD+
Sbjct: 282 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDI 328

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 104 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 163
           N+L+ R F  ++ +   +    NG++ +   +   +   +DG    V  E G T+D D +
Sbjct: 226 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 284
Query: 164 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 207
           ++ IG  P  +  +   VG+  +  GG+QVD   RT +P I+AIGD+
Sbjct: 285 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDI 331

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 25/210 (11%)
Query: 10  IDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY------LPGVHYI---RDVAD 60
           +D   +    N+ KLL  G  +     TA R    +GG+      LPG        +  D
Sbjct: 111 LDTRAELAGPNTVKLLASGKTV-----TAERIVIAVGGHPSPHDALPGHELCITSNEAFD 165
Query: 61  ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
             AL  S+  A         YI +E A    G  + TT+I+    +L R F     +   
Sbjct: 166 LPALPESILIA------GGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLH 218
Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ER 178
              ++ G++ +    I+++ A +DGR  A   + G  + AD + + +G  P  +    E 
Sbjct: 219 AAXEEKGIRILCEDIIQSVSADADGRRVATTXKHGEIV-ADQVXLALGRXPNTNGLGLEA 277
Query: 179 VGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 207
            G+ ++ +G I VD   RT  PGI+A+GDV
Sbjct: 278 AGVRTNELGAIIVDAFSRTSTPGIYALGDV 307

>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
           VT ID   Q +     ++ +Y  L++A G    R P + G     ++ I D+ D      
Sbjct: 83  VTGIDPGHQRIWIGEEEV-RYRDLVLAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQ 140
Query: 67  SLEKAKKXXXXXXXYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
           +    ++        IG E A   ++ G++LD  ++ P   ++  L  P+ A+  +   +
Sbjct: 141 AAAGKRRVLLLGAGLIGCEFANDLSSGGYQLD--VVAPCEQVMPGLLHPAAAKAVQAGLE 198
Query: 125 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 184
             GV+F  G  + +L+   +G  A   L DG  I  D +V  +G +P        GL  +
Sbjct: 199 GLGVRFHLGPVLASLKKAGEGLEA--HLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN 256
Query: 185 VGGIQVDGQFRTRMPGIFAIGDVA 208
            G I VD   RT    I+A+GD A
Sbjct: 257 RG-IVVDRSLRTSHANIYALGDCA 279

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 81  YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 137
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 138 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 189
            +EAG+ GR  V A       TI+   +T+++ +G          E VG  +N   G I 
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 190 VDGQFRTRMPGIFAIGDVAAFPLKM 214
           V  + +T +P I+AIGD+    L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 81  YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 137
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 138 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 189
            +EAG+ GR  V A       TI+   +T+++ +G          E VG  +N   G I 
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 190 VDGQFRTRMPGIFAIGDVAAFPLKM 214
           V  + +T +P I+AIGD+    L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 11/162 (6%)
Query: 81  YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136
           YIG+E A A        T+I     P    L + FT  L +  E     N +    G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 196
           +  E   DGRV  V + D +  DAD +V+ +G +P  +  +        G I+ D   RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 197 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 238
             P +FA+GD         D    +    +A +  +  +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNL 313

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 15/202 (7%)
Query: 9   SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 68
           +++++K+    N+ ++     ++VATG  A  FPE I G+  G        D+D      
Sbjct: 134 NVEVQKRD---NTTEVYSANHILVATGGKAI-FPENIPGFELG-------TDSDGFFRLE 182
Query: 69  EKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 128
           E+ KK       YIG+E+A    G   +T ++     +L R F   +       Y + G+
Sbjct: 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGI 241
Query: 129 KFVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVS-PFERVGLN-SSV 185
              K + I  +E   +     + + D  +I D D ++  IG K  +    E VG+  +S 
Sbjct: 242 NVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH 301
Query: 186 GGIQVDGQFRTRMPGIFAIGDV 207
             I  D    T +P I+++GDV
Sbjct: 302 DQIIADEYQNTNVPNIYSLGDV 323

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 24/233 (10%)
Query: 4   QDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK----------IGGYLP 50
           + PV SID + +T   L+     +  Y  LI ATG      P K              L 
Sbjct: 112 ESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLE 171
Query: 51  GVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108
            + +++   ++  +I+ LE    K+       YIG+E+A A      +  +I   +  L 
Sbjct: 172 NLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA 231
Query: 109 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168
             +   L     +  +++G++   G ++K  E   +G+V  + + D +  D D +++ +G
Sbjct: 232 GYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDMVILAVG 288
Query: 169 AKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 220
            +P  +    ++ L  + G   V+ +  T +PG++AIGD A     +YD   R
Sbjct: 289 FRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IYDNATR 336

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 24/233 (10%)
Query: 4   QDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK----------IGGYLP 50
           + PV SID + +T   L+     +  Y  LI ATG      P K              L 
Sbjct: 112 ESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLE 171
Query: 51  GVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108
            + +++   ++  +I+ LE    K+       YIG+E+A A      +  +I   +  L 
Sbjct: 172 NLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA 231
Query: 109 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168
             +   L     +  +++G++   G ++K  E   +G+V  + + D +  D D +++ +G
Sbjct: 232 GYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDMVILAVG 288
Query: 169 AKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 220
            +P  +    ++ L  + G   V+ +  T +PG++AIGD A     +YD   R
Sbjct: 289 FRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IYDNATR 336

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 81  YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 137
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 214 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 271
Query: 138 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 189
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 272 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 331
Query: 190 VDGQFRTRMPGIFAIGDV 207
           V  + +T +P I+AIGD+
Sbjct: 332 VTDEEQTNVPYIYAIGDI 349

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 81  YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 137
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 222 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 279
Query: 138 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 189
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 280 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 339
Query: 190 VDGQFRTRMPGIFAIGDV 207
           V  + +T +P I+AIGD+
Sbjct: 340 VTDEEQTNVPYIYAIGDI 357

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 81  YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 137
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 138 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 189
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 190 VDGQFRTRMPGIFAIGDV 207
           V  + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 81  YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 137
           Y+ +E A    G  LD T++     +L R F   +A +  +  +++G+KF++      ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 138 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 189
            +EAG+ GR+  V     S      + +T+++ IG          E VG  +N   G I 
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 190 VDGQFRTRMPGIFAIGDV 207
           V  + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 29  SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 87
           ++++ATG   + FP        G+    D   +     SL+K  +K        IG+E+ 
Sbjct: 143 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 194
Query: 88  AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 147
           +       D T +    H+        +++ ++++ Q+ G KF     +      SDG++
Sbjct: 195 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 254
Query: 148 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 199
             V +E  S      I  D +++ IG +P       E +G+     G I V+ +F+T++P
Sbjct: 255 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 313
Query: 200 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 250
            I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 314 NIYAIGDVVAGPMLAHK----------AEDEGIICVEGMAGGAVHIDYNCVP 355

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 29  SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 87
           ++++ATG   + FP        G+    D   +     SL+K  +K        IG+E+ 
Sbjct: 143 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 194
Query: 88  AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 147
           +       D T +    H+        +++ ++++ Q+ G KF     +      SDG++
Sbjct: 195 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 254
Query: 148 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 199
             V +E  S      I  D +++ IG +P       E +G+     G I V+ +F+T++P
Sbjct: 255 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 313
Query: 200 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 250
            I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 314 NIYAIGDVVAGPMLAHK----------AEDEGIICVEGMAGGAVHIDYNCVP 355

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 29  SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 87
           ++++ATG   + FP        G+    D   +     SL+K  +K        IG+E+ 
Sbjct: 164 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 215
Query: 88  AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 147
           +       D T +    H+        +++ ++++ Q+ G KF     +      SDG++
Sbjct: 216 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 275
Query: 148 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 199
             V +E  S      I  D +++ IG +P       E +G+     G I V+ +F+T++P
Sbjct: 276 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 334
Query: 200 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 250
            I+AIGDV A P+  +           A      C++ +     H  Y+ +P
Sbjct: 335 NIYAIGDVVAGPMLAHK----------AEDEGIICVEGMAGGAVHIDYNCVP 376

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 106 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 226 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 284
Query: 166 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 207
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV
Sbjct: 285 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDV 328

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 106 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 225 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 283
Query: 166 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 207
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV
Sbjct: 284 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDV 327

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 106 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 224 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 282
Query: 166 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 207
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV
Sbjct: 283 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDV 326

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 106 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165
           ++ R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++
Sbjct: 225 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 283
Query: 166 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 219
            IG  P     +    G+    GG+QVD   RT +  I+AIGDV       P+ + +  A
Sbjct: 284 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 343
Query: 220 RVEHV--------DHAR 228
            V+ V        DH R
Sbjct: 344 LVDTVFGTNPRKTDHTR 360

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 15/198 (7%)
Query: 12  IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 71
           ++ +TL  N G+ +    +++ATG   S  P+     +PGV Y     D+D   +     
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 72  KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
           ++       YI +E+A    G    T + F   H   R F P +++   ++    G +  
Sbjct: 168 ERVAVVGAGYIAVELAGVINGLGAKTHL-FVRKHAPLRSFDPMISETLVEVMNAEGPQLH 226
Query: 132 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGG-I 188
             A  K +   +DG +  ++LEDG +   D ++  IG +P       E  G+ ++  G I
Sbjct: 227 TNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYI 285
Query: 189 QVDGQFRTRMPGIFAIGD 206
            VD    T + GI+A+GD
Sbjct: 286 VVDKYQNTNIEGIYAVGD 303

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 28/203 (13%)
Query: 27  YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGM 84
           Y +L+++ G  A   P   G   P  H +R++ D D ++ +++    +        +IG+
Sbjct: 106 YDTLLLSPGA-APIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGL 164
Query: 85  EVAAAAVGWKLDTTIIFPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE- 140
           E+  +     + TT++     L  ++ TP    +A    Q  +  GV    G ++  +  
Sbjct: 165 EMMESLHHLGIKTTLL----ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSY 220
Query: 141 ----------AGSDGRVAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-S 183
                     AG D     +K      L +G  ++ D +++ IG +P        GL   
Sbjct: 221 QVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIG 280
Query: 184 SVGGIQVDGQFRTRMPGIFAIGD 206
            +GGI+V+   +T  P I+A+GD
Sbjct: 281 ELGGIKVNAMMQTSDPAIYAVGD 303

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 27/241 (11%)
Query: 18  ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI-RDVADADALISSLEKAKKXXX 76
           I     ++K   +I+ATG             LPGV    + +  +   ++  E  KK   
Sbjct: 131 IEGENTVVKGKHIIIATGSDVKS--------LPGVTIDEKKIVSSTGALALSEIPKKLVV 182
Query: 77  XXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136
               YIG+E+ +       + T++   + ++  +    + +++++  ++ G+KF     +
Sbjct: 183 IGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM-DAEIRKQFQRSLEKQGMKFKLKTKV 241
Query: 137 KNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVS--PFERVGLNS-SVGGIQV 190
             ++   DG    V+   G   + I+AD +++  G  P  S    +++G+ +  +G I V
Sbjct: 242 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILV 301
Query: 191 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYL 249
           + +F T + G++AIGDV   P+  +           A +    C++ L     H  YD +
Sbjct: 302 NERFSTNVSGVYAIGDVIPGPMLAHK----------AEEDGVACVEYLAGKVGHVDYDKV 351
Query: 250 P 250
           P
Sbjct: 352 P 352

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 55  IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT 112
           +R+V D D + + ++  K +        +IG+E         ++ T++   N +   +  
Sbjct: 169 LRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEXVENLRERGIEVTLVEXANQVXPPIDY 228
Query: 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172
              A  +E   + + V+ V    +  LE       A V+L+ GS I  D +++ IG +P 
Sbjct: 229 EXAAYVHEHX-KNHDVELVFEDGVDALEENG----AVVRLKSGSVIQTDXLILAIGVQPE 283
Query: 173 VSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGD 206
            S  +  GL   V G I+V+ +F+T  P I+AIGD
Sbjct: 284 SSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 24  LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 82
           LL    +++ATG    R+P ++ G L  G+        +D +    E   K       Y+
Sbjct: 145 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 196
Query: 83  GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 142
            +E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++  
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 254
Query: 143 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGL--NSSVGGIQVDGQ 193
              ++  V  ED +     T   DT++  IG  P       E+ G+  N     I VD Q
Sbjct: 255 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 313
Query: 194 FRTRMPGIFAIGDVA 208
             T +P I+AIGDVA
Sbjct: 314 EATSVPHIYAIGDVA 328

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 24  LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 82
           LL    +++ATG    R+P ++ G L  G+        +D +    E   K       Y+
Sbjct: 171 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 222
Query: 83  GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 142
            +E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++  
Sbjct: 223 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 280
Query: 143 SDGRVA------AVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG--IQVDG 192
              ++       A   ED  T D  T++  IG  P       E+ G++++     I VD 
Sbjct: 281 PTNQLQVTWEDHASGKEDTGTFD--TVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDA 338
Query: 193 QFRTRMPGIFAIGDVA 208
           Q  T +P I+AIGDVA
Sbjct: 339 QEATSVPHIYAIGDVA 354

>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 143 SDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 198
           S+G +  V L   DGS  T++AD ++I IG K  + P  R  L      + VD   +T +
Sbjct: 231 SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSV 290
Query: 199 PGIFAIGDVAAFPLKM 214
            G++A GD+A +P K+
Sbjct: 291 DGLYAAGDIAYYPGKL 306

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 81  YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 140
           YIG+E+  A        +++     +L   +   L     +  ++ G+    G S++  E
Sbjct: 181 YIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE 239
Query: 141 AG----SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG--IQVDGQF 194
            G    +DG+   ++LE      AD +++ +G +P    F    L+  + G  I +D + 
Sbjct: 240 NGCLLANDGKGGQLRLE------ADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293
Query: 195 RTRMPGIFAIGDVAAFPLKMYDRTARVEHV 224
           +T M  ++AIGDVA  P+  +   A+ E V
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMV 323

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 27/204 (13%)
Query: 12  IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 71
           ++ +TL  N G+ +    +++ATG   S  P+     +PGV Y     D+D   +     
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 72  KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPSLAQRYEQLYQQ 125
           ++       YIG+E+     G    T       HL +        F P +++   ++   
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKT-------HLFEMFDAPLPSFDPMISETLVEVMNA 220
Query: 126 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNS 183
            G +    A  K +   +DG +  ++LEDG +   D ++  IG +P       E  G+ +
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 184 SVGG-IQVDGQFRTRMPGIFAIGD 206
           +  G I VD    T + GI+A+GD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 6/163 (3%)
Query: 49  LPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108
            P V  I +   +D   + ++++KK       YI +E+        +D+ I    N +L+
Sbjct: 155 FPPVKGIENTISSDEFFN-IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR 213
Query: 109 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGI 167
           + F  S+    E   ++N +  V  A +  ++  SD  ++ + L DG   +  D ++  +
Sbjct: 214 K-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 271
Query: 168 GAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 208
           G  P       E++ + ++   I VD   RT +  I+A+GD  
Sbjct: 272 GRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCC 314

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGSTIDADTIVIGIGAKP 171
           +A++ ++   + G+ F  GA +       DG       VK  + +T+DA+ ++I  G KP
Sbjct: 241 VAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKP 300
Query: 172 TVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 211
           +       + G+   S G +++D  F+T + G++AIGDV   P
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 28/203 (13%)
Query: 27  YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGM 84
           Y +L+++ G  A   P   G   P  H +R++ D D ++ +++    +        +IG+
Sbjct: 106 YDTLLLSPGA-APIVPPIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGL 164
Query: 85  EVAAAAVGWKLDTTIIFPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE- 140
           E   +     + TT++     L  ++ TP     A    Q  +  GV    G ++  +  
Sbjct: 165 EXXESLHHLGIKTTLL----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSY 220
Query: 141 ----------AGSDGRVAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-S 183
                     AG D     +K      L +G  ++ D ++  IG +P        GL   
Sbjct: 221 QVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIG 280
Query: 184 SVGGIQVDGQFRTRMPGIFAIGD 206
            +GGI+V+   +T  P I+A+GD
Sbjct: 281 ELGGIKVNAXXQTSDPAIYAVGD 303

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 28/203 (13%)
Query: 27  YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGM 84
           Y +L+++ G  A   P   G   P  H +R++ D D ++ +++    +        +IG+
Sbjct: 106 YDTLLLSPGA-APIVPPIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGL 164
Query: 85  EVAAAAVGWKLDTTIIFPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE- 140
           E   +     + TT++     L  ++ TP     A    Q  +  GV    G ++  +  
Sbjct: 165 EXXESLHHLGIKTTLL----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSY 220
Query: 141 ----------AGSDGRVAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-S 183
                     AG D     +K      L +G  ++ D ++  IG +P        GL   
Sbjct: 221 QVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIG 280
Query: 184 SVGGIQVDGQFRTRMPGIFAIGD 206
            +GGI+V+   +T  P I+A+GD
Sbjct: 281 ELGGIKVNAXXQTSDPAIYAVGD 303

>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 30  LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 88
           +I+A+G   ++        LPGV Y     D     +S  K  +        YIG+E+A+
Sbjct: 136 MIIASGAETAKLR------LPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIAS 189
Query: 89  AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 148
                 + T II   +  L  L    +      + + N +KF   + +  ++   D    
Sbjct: 190 IFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLN-IKF--NSPVTEVKKIKDDEYE 246
Query: 149 AV-KLEDGS--TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDGQFRTRMPGIFAI 204
            +   +DGS  +I  +++V+  G +P +    R +GL+ S  GI VD   +T +P +FA 
Sbjct: 247 VIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFAT 306
Query: 205 GD 206
           GD
Sbjct: 307 GD 308

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 21/224 (9%)
Query: 7   VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHY-IRDVAD 60
           V +I+ E+QT+      TN      Y  LI++ G +A+       G+   + + +R++ D
Sbjct: 80  VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-----GFESDITFTLRNLED 134
Query: 61  ADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
            DA+   ++  +  K       Y+ +EV        L  T+I   + +  +L    + Q 
Sbjct: 135 TDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI-NKLMDADMNQP 193
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
                 +  + +     I  +          +  + G     D I+ G+G  P     E 
Sbjct: 194 ILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHYDMIIEGVGTHPNSKFIES 247
Query: 179 VGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 221
             +     G I V+ +F T +P I+AIGD+A    +  D  A V
Sbjct: 248 SNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 21/224 (9%)
Query: 7   VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHY-IRDVAD 60
           V +I+ E+QT+      TN      Y  LI++ G +A+       G+   + + +R++ D
Sbjct: 80  VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-----GFESDITFTLRNLED 134
Query: 61  ADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
            DA+   ++  +  K       Y+ +EV        L  T+I   + +  +L    + Q 
Sbjct: 135 TDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI-NKLMDADMNQP 193
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
                 +  + +     I  +          +  + G     D I+ G+G  P     E 
Sbjct: 194 ILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHYDMIIEGVGTHPNSKFIES 247
Query: 179 VGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 221
             +     G I V+ +F T +P I+AIGD+A    +  D  A V
Sbjct: 248 SNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 21/224 (9%)
Query: 7   VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHY-IRDVAD 60
           V +I+ E+QT+      TN      Y  LI++ G +A+       G+   + + +R++ D
Sbjct: 80  VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-----GFESDITFTLRNLED 134
Query: 61  ADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
            DA+   ++  +  K       Y+ +EV        L  T+I   + +  +L    + Q 
Sbjct: 135 TDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI-NKLMDADMNQP 193
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
                 +  + +     I  +          +  + G     D I+ G+G  P     E 
Sbjct: 194 ILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHYDMIIEGVGTHPNSKFIES 247
Query: 179 VGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 221
             +     G I V+ +F T +P I+AIGD+A    +  D  A V
Sbjct: 248 SNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 21/224 (9%)
Query: 7   VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHY-IRDVAD 60
           V +I+ E+QT+      TN      Y  LI++ G +A+       G+   + + +R++ D
Sbjct: 80  VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-----GFESDITFTLRNLED 134
Query: 61  ADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
            DA+   ++  +  K       Y+ +EV        L  T+I   + +  +L    + Q 
Sbjct: 135 TDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI-NKLMDADMNQP 193
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
                 +  + +     I  +          +  + G     D I+ G+G  P     E 
Sbjct: 194 ILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHYDMIIEGVGTHPNSKFIES 247
Query: 179 VGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 221
             +     G I V+ +F T +P I+AIGD+A    +  D  A V
Sbjct: 248 SNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 21/224 (9%)
Query: 7   VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHY-IRDVAD 60
           V +I+ E+QT+      TN      Y  LI++ G +A+       G+   + + +R++ D
Sbjct: 80  VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-----GFESDITFTLRNLED 134
Query: 61  ADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
            DA+   ++  +  K       Y+ +EV        L  T+I   + +  +L    + Q 
Sbjct: 135 TDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI-NKLMDADMNQP 193
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
                 +  + +     I  +          +  + G     D I+ G+G  P     E 
Sbjct: 194 ILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHYDMIIEGVGTHPNSKFIES 247
Query: 179 VGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 221
             +     G I V+ +F T +P I+AIGD+A    +  D  A V
Sbjct: 248 SNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 21/224 (9%)
Query: 7   VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHY-IRDVAD 60
           V +I+ E+QT+      TN      Y  LI++ G +A+       G+   + + +R++ D
Sbjct: 81  VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-----GFESDITFTLRNLED 135
Query: 61  ADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
            DA+   ++  +  K       Y+ +EV        L  T+I   + +  +L    + Q 
Sbjct: 136 TDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI-NKLMDADMNQP 194
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
                 +  + +     I  +          +  + G     D I+ G+G  P     E 
Sbjct: 195 ILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHYDMIIEGVGTHPNSKFIES 248
Query: 179 VGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 221
             +     G I V+ +F T +P I+AIGD+A    +  D  A V
Sbjct: 249 SNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 292

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 21/224 (9%)
Query: 7   VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHY-IRDVAD 60
           V +I+ E+QT+      TN      Y  LI++ G +A+       G+   + + +R++ D
Sbjct: 80  VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-----GFESDITFTLRNLED 134
Query: 61  ADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
            DA+   ++  +  K       Y+ +EV        L  T+I   + +  +L    + Q 
Sbjct: 135 TDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI-NKLMDADMNQP 193
Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 178
                 +  + +     I  +          +  + G     D I+ G+G  P     E 
Sbjct: 194 ILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHYDMIIEGVGTHPNSKFIES 247
Query: 179 VGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 221
             +     G I V+ +F T +P I+AIGD+A    +  D  A V
Sbjct: 248 SNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASV 291

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 61  ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
           +D   +  ++ K+       YIG+E+A     +  + T++  E+ LL + F P L+    
Sbjct: 156 SDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLA 214
Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGIGAKPTVSPF--E 177
           +     G++     ++  LE   D +   +  +DG+ ++  D+++  +G  P       E
Sbjct: 215 ENMHAQGIETHLEFAVAALE--RDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLE 272
Query: 178 RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 207
             G+   S G +  D    T +PG++A+GD+
Sbjct: 273 AAGIEVQSNGMVPTDAYQNTNVPGVYALGDI 303

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 11  DIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 70
           D+ K+  +T      KY  +++ATGC     P+ + G        ++++     I SL+K
Sbjct: 177 DLSKEETVTG-----KY--ILIATGCRP-HIPDDVEG-------AKELSITSDDIFSLKK 221
Query: 71  -AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 129
              K       Y+ +E +        D T+      ++ R F    A + +   ++ GV 
Sbjct: 222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS--IVLRGFDQQCAVKVKLYMEEQGVM 279
Query: 130 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE----RVGLNSSV 185
           F  G   K L    D  +  V+  D ++   DT++  IG K  +         + +N S 
Sbjct: 280 FKNGILPKKLTKMDDKIL--VEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSN 337
Query: 186 GGIQVDGQFRTRMPGIFAIGDVA 208
             I  D    T +P IFA+GDVA
Sbjct: 338 NKIIADHLSCTNIPSIFAVGDVA 360

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	1e-82
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	2e-04
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	5e-82
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	2e-81
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	1e-79
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	4e-04
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	5e-79
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	1e-04
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-78
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	2e-04
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	1e-51
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	6e-45
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	8e-05
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	3e-43
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	1e-42
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	4e-42
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	6e-41
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	8e-41
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	9e-41
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	2e-40
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	5e-40
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	2e-39
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	5e-39
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	2e-37
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	4e-27
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	4e-27
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	8e-27
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	2e-26
4dna_A	463	Probable glutathione reductase; structural genomic	5e-26
1fec_A	490	Trypanothione reductase; redox-active center, oxid	6e-26
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	5e-25
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	4e-24
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	7e-23
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	8e-23
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	2e-22
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	6e-22
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	9e-22
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	3e-21
4fk1_A	304	Putative thioredoxin reductase; structural genomic	9e-21
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	2e-20
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	4e-20
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	6e-20
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	2e-19
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	1e-07
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	2e-19
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	5e-19
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-18
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	3e-18
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-05
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	6e-18
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	2e-17
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	2e-17
1ojt_A	482	Surface protein; redox-active center, glycolysis,	2e-17
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	3e-17
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	5e-17
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	3e-07
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	6e-17
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	1e-16
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	2e-16
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	3e-16
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	3e-16
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	7e-16
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	2e-15
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	3e-15
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	8e-15
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	2e-14
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	2e-13
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	4e-13
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	1e-12
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	8e-04
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	6e-12
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	7e-11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	9e-11
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	3e-10
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
3r9u_A	315	Thioredoxin reductase; structural genomics, center	1e-07
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	4e-07
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	7e-07
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	7e-07
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	1e-06
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	3e-06
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	1e-05
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	2e-04
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	6e-04
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	6e-04
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	8e-04

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  256 bits (656), Expect = 1e-82
 Identities = 99/353 (28%), Positives = 165/353 (46%), Gaps = 17/353 (4%)

Query: 6   PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG--GYLPGVHYIRDVADADA 63
            VT+I+ ++Q +I + G+ L Y  L++ATG      P   G  G      Y+R + DA+ 
Sbjct: 82  QVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAEC 141

Query: 64  LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 123
           +   L    ++VV+GGGYIG+EVAA A+   +  T++     +L+R+  P ++  YE L+
Sbjct: 142 IRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLH 201

Query: 124 QQNGVKFVKGASIKNLE-AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 182
           ++ GV    G  +   E +    +V AV  EDG+ + AD ++ GIG  P        GL 
Sbjct: 202 REAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQ 261

Query: 183 SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 242
               GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+     L    
Sbjct: 262 VD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV 320

Query: 243 THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLK 299
               +  P+F+S  +E       +  +  G + G    I  G+   P  + F++   ++ 
Sbjct: 321 P-RDEAAPWFWSDQYE-----IGL--KMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVL 372

Query: 300 GVLVESGSPEEFQLLPTLARSQPFVDKAKLQQAS-SVEEALEIARAALPVEAA 351
            V      P EF     +   +  V+   L   S  ++E +  A+A L    A
Sbjct: 373 AV-DTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKAELSSAPA 424

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 18/112 (16%)

Query: 74  VVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENH------------LLQRLFTPSLAQRY 119
           VV+VG G  G+EVA    A GW+ +  ++                 L  +    SL  R 
Sbjct: 7   VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 66

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171
              Y    ++ + G  +  +          V L DG  +D D +V+  G +P
Sbjct: 67  PDAYAAQNIQLLGGTQVTAINRDR----QQVILSDGRALDYDRLVLATGGRP 114

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  256 bits (657), Expect = 5e-82
 Identities = 76/332 (22%), Positives = 135/332 (40%), Gaps = 25/332 (7%)

Query: 5   DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADA 61
             V  +D+    +  N G  + Y   ++ATG T       ++ G  +       R + D 
Sbjct: 111 KKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDF 170

Query: 62  DALISSLEKAKKVVVVGGGYIGMEVAAA----AVGWKLDTTIIFPENHLLQRLFTPSLAQ 117
            +L     + K + ++GGG++G E+A A    A     +   +FPE   + ++    L+ 
Sbjct: 171 RSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSN 230

Query: 118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 177
              +  ++ GVK +  A ++++          +KL+DG  ++ D IV  +G +P V   +
Sbjct: 231 WTMEKVRREGVKVMPNAIVQSVGV--SSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAK 288

Query: 178 RVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI 235
             GL  +S  GG +V+ + + R   I+  GD A F      R  RVEH DHA  S +   
Sbjct: 289 TGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAG 346

Query: 236 KALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIA-----T 290
           + +  A    Y +   F+S +   +     V ++  G        +G F    A     +
Sbjct: 347 ENMTGAAKP-YWHQSMFWSDLG-PD-----VGYEAIGLVDSSLPTVGVFAKATAQDNPKS 399

Query: 291 FWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 322
               SG       E+ S      +P    + P
Sbjct: 400 ATEQSGTGIRSESETESEASEITIPPSTPAVP 431

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  252 bits (646), Expect = 2e-81
 Identities = 91/328 (27%), Positives = 143/328 (43%), Gaps = 15/328 (4%)

Query: 5   DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 64
           D + SID E + L+  SG  ++YG L++ATG             LP V Y+R + +++ L
Sbjct: 77  DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVP-NASLPDVLYLRTLDESEVL 135

Query: 65  ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
              +   K VVV+G G+IG+E AA A    L+  ++     ++ R+ TP ++  +   + 
Sbjct: 136 RQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHS 195

Query: 125 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 184
             G++   G     +      RV  V L DG+T+  D +V+G+G  P V      GL ++
Sbjct: 196 GAGIRMHYGVRATEIA-AEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTA 254

Query: 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH 244
             GI VD Q  T  P I AIGD A F    +  T RVE V +A   A+     L      
Sbjct: 255 -AGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLT-GDAK 312

Query: 245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGV 301
            YD  P+F+S   +      K+  Q  G   G  + +  G+      + F   +GKL G+
Sbjct: 313 PYDGYPWFWSDQGD-----DKL--QIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGI 365

Query: 302 LVESGSPEEFQLLPTLARSQPFVDKAKL 329
                   +      +      V   + 
Sbjct: 366 -ESVNRAADHVFGRKILPLDKSVTPEQA 392

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  248 bits (636), Expect = 1e-79
 Identities = 87/327 (26%), Positives = 148/327 (45%), Gaps = 17/327 (5%)

Query: 6   PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI 65
            VT++D++ +T+  + G  L   ++++ATG  A       G  LPGV  +R   D   L 
Sbjct: 79  EVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALP-GSQLPGVVTLRTYGDVQVLR 137

Query: 66  SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 125
            S   A ++++VGGG IG EVA  A    L  TI+   + LL R+    +      L  +
Sbjct: 138 DSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTE 197

Query: 126 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV 185
            GV+   G  +       +G++  V   DG +  AD+ +I +GA+P      + GL    
Sbjct: 198 LGVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD- 254

Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT 245
            G+ VD    T   G+FA+GDVA++PL+   R   +E   +A++ A     A+L      
Sbjct: 255 RGVIVDHCGATLAKGVFAVGDVASWPLRAGGRR-SLETYMNAQRQAAAVAAAILGKNVS- 312

Query: 246 YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVL 302
              LP  ++ +        ++  Q  GD  G  + +  G         F +   +++ V 
Sbjct: 313 APQLPVSWTEIAG-----HRM--QMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAV- 364

Query: 303 VESGSPEEFQLLPTLARSQPFVDKAKL 329
           V   +P +F L   L  ++  ++ A+L
Sbjct: 365 VAVDAPRDFALATRLVEARAAIEPARL 391

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 74  VVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHL-----------LQRLFTPSLAQRYE 120
           V ++G G  G   A A  A G++   ++I  E HL           L             
Sbjct: 5   VAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEA 64

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171
             Y +  +  + G  +  L+  +      + L+DG+T+ AD IVI  G++ 
Sbjct: 65  DWYGEARIDMLTGPEVTALDVQT----RTISLDDGTTLSADAIVIATGSRA 111

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  246 bits (631), Expect = 5e-79
 Identities = 85/344 (24%), Positives = 142/344 (41%), Gaps = 21/344 (6%)

Query: 6   PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI 65
              S D +  T+  + G+ L YG+L++ATG      P  + G    VH +R + DA  + 
Sbjct: 81  TAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT-LQGATMPVHTLRTLEDARRIQ 139

Query: 66  SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 125
           + L    ++++VGGG IG+E+AA A    +  +++  +  L+ R    +LA    + +  
Sbjct: 140 AGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAA 199

Query: 126 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV 185
            GV      S+      +      V L+DG+ I AD +V+GIG     +     GL    
Sbjct: 200 QGVDLRFERSV------TGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACD- 252

Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT 245
            GI VD   RT  P ++A+GDV      +  R  R+E   +A+       + L+      
Sbjct: 253 DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAPG 312

Query: 246 YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-ETIEIGNFDP---KIATFWIDSGKLKGV 301
           Y  LP+++S          ++  Q  G   G E I  G       K     +  G++ G 
Sbjct: 313 YAELPWYWSDQGA-----LRI--QVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGA 365

Query: 302 LVESGSPEEFQLLPTLARSQPFVDKAKLQQAS-SVEEALEIARA 344
                +  +F  L  L       D+A L   +  + +      A
Sbjct: 366 -TCVNNARDFAPLRRLLAVGAKPDRAALADPATDLRKLAAAVAA 408

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 74  VVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHL-LQR-------LFTPSLAQRYEQLY 123
           VVV+G G   +   A     G++   T++  E      R       +      +      
Sbjct: 10  VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCK 69

Query: 124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171
           +   V+++ G + ++ +  +      V L DG T+   T+V+  GA P
Sbjct: 70  RAPEVEWLLGVTAQSFDPQA----HTVALSDGRTLPYGTLVLATGAAP 113

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  245 bits (629), Expect = 1e-78
 Identities = 94/330 (28%), Positives = 157/330 (47%), Gaps = 17/330 (5%)

Query: 5   DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 64
             V S+D    T+    G  ++YG LI ATG    R    +G  L GVH +R   DAD L
Sbjct: 86  AEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSC-VGADLAGVHAVRTKEDADRL 144

Query: 65  ISSLEK-AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 123
           ++ L+  AK  VV+GGGYIG+E AA    + ++ T++     +L R+   +L++ Y+  +
Sbjct: 145 MAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEH 204

Query: 124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 183
           + +GV    GA++  +E G   +V  V+++DGS I AD +++GIG  P V      G + 
Sbjct: 205 RAHGVDLRTGAAMDCIE-GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASG 263

Query: 184 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQ 242
              G+ VD   RT +  ++AIGD AA      D    R+E V +A   A    K +  A 
Sbjct: 264 G-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP 322

Query: 243 THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLK 299
              Y   P+F+S  ++      K+  Q  G + G    +  G+      +  ++  GK+ 
Sbjct: 323 V-PYKATPWFWSNQYD-----LKL--QTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVV 374

Query: 300 GVLVESGSPEEFQLLPTLARSQPFVDKAKL 329
            +       +++     L  ++  +   +L
Sbjct: 375 AL-DCVNMVKDYVQGKKLVEARAQIAPEQL 403

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 18/112 (16%)

Query: 74  VVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENH------------LLQRLFTPSLAQRY 119
           VV+VG G+ G + A A    G++    +I  E              L +      +  R 
Sbjct: 12  VVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRP 71

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171
            Q ++   V+   GA + +L+  +      VKL DGS I+   ++   G  P
Sbjct: 72  AQFWEDKAVEMKLGAEVVSLDPAA----HTVKLGDGSAIEYGKLIWATGGDP 119

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  175 bits (445), Expect = 1e-51
 Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 14/247 (5%)

Query: 5   DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 64
             VT ID   Q +     ++ +Y  L++A G    R P + G     ++ I D+ D    
Sbjct: 81  TRVTGIDPGHQRIWIGEEEV-RYRDLVLAWGAEPIRVPVE-GDAQDALYPINDLEDYARF 138

Query: 65  ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
             +    ++V+++G G IG E A           ++ P   ++  L  P+ A+  +   +
Sbjct: 139 RQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLE 198

Query: 125 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 184
             GV+F  G  + +L+    G      L DG  I  D +V  +G +P        GL  +
Sbjct: 199 GLGVRFHLGPVLASLKK--AGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGL--A 254

Query: 185 VG-GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 243
           V  GI VD   RT    I+A+GD A              +V      A+   + L    +
Sbjct: 255 VNRGIVVDRSLRTSHANIYALGDCAEVDGLNL------LYVMPLMACARALAQTLAGNPS 308

Query: 244 HTYDYLP 250
               Y P
Sbjct: 309 -QVAYGP 314

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  157 bits (399), Expect = 6e-45
 Identities = 58/331 (17%), Positives = 109/331 (32%), Gaps = 42/331 (12%)

Query: 5   DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 64
           +  TSID   + +   SG+ +KY  LI+A+G  A++    +      +  +    DA  +
Sbjct: 83  EFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIK--VPH-ADEIFSLYSYDDALKI 139

Query: 65  ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
               +   K  ++GGG +G+E+A A +      +I     + L+R          +    
Sbjct: 140 KDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLD 199

Query: 125 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 184
           + G+K    ++ +               E G  I +  ++  +G KP +   +   + S 
Sbjct: 200 RLGIKIYTNSNFE---------------EMGDLIRSSCVITAVGVKPNLDFIKDTEIASK 244

Query: 185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH 244
             GI V+    T +  I+A GDVA F  K                +  +        +  
Sbjct: 245 -RGILVNDHMETSIKDIYACGDVAEFYGKNPGLINIA--NKQGEVAGLN-----ACGEDA 296

Query: 245 TYD-YLPYFYSRVFEYE-GSPRKVWWQFFGDNVGETIEIGNFDPKIATF---WIDSGKLK 299
           +Y   +P    +V      S         GD             +   +    +   K+ 
Sbjct: 297 SYSEIIPSPILKVSGISIIS--------CGDIENNKPSKVFRSTQEDKYIVCMLKENKID 348

Query: 300 G-VLVESGSPEEFQLLPTLARSQPFVDKAKL 329
              ++  G       L     S    D    
Sbjct: 349 AAAVI--GDVSLGTKLKKAIDSSKSFDNISS 377

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 66  SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------LLQRLFT-----PS 114
               K+ K++++G G  G   A AA+G   D T+I  E +       L  +         
Sbjct: 4   HHHHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDD 63

Query: 115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 174
           +  +    Y++N +K +      +++   + ++  V L+ G  I  + ++I  G+     
Sbjct: 64  ILIKKNDWYEKNNIKVITSEFATSIDP--NNKL--VTLKSGEKIKYEKLIIASGSIANKI 119

Query: 175 PFE 177
              
Sbjct: 120 KVP 122

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  154 bits (391), Expect = 3e-43
 Identities = 60/211 (28%), Positives = 89/211 (42%), Gaps = 14/211 (6%)

Query: 7   VTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           VT++D E +T     LITN  K   Y  LI+ TG   +  P   G     V+  ++  DA
Sbjct: 81  VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTV-PPIPGIDSSRVYLCKNYNDA 139

Query: 62  DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 121
             L     KAK + ++G GYIG E+A A      +  +I     +L + F         +
Sbjct: 140 KKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAK 199

Query: 122 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE---R 178
            Y+ +GV  V G+ +   E   D  +      DG  I +D  ++ IG +P     +    
Sbjct: 200 DYEAHGVNLVLGSKVAAFE-EVDDEIITK-TLDGKEIKSDIAILCIGFRPNTELLKGKVA 257

Query: 179 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 209
           +  N   G I  D    +    IFA GD AA
Sbjct: 258 MLDN---GAIITDEYMHSSNRDIFAAGDSAA 285

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  152 bits (387), Expect = 1e-42
 Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 13/209 (6%)

Query: 7   VTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA 63
           V ++D+E Q +        +   Y  LI+ATG +      + G     +   + ++ A A
Sbjct: 81  VVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIR-GSQTEKLLKYKFLSGALA 139

Query: 64  LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 123
            +  LE ++ V V+G G IGME     V  K    +     +LL + F   +    ++  
Sbjct: 140 AVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSL 199

Query: 124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE---RVG 180
           ++  V F    ++  +E         +       I  D+ +  +   P ++  +   +  
Sbjct: 200 EKQAVIFHFEETVLGIE--ETANGIVL-ETSEQEISCDSGIFALNLHPQLAYLDKKIQRN 256

Query: 181 LNSSVGGIQVDGQFRTRMPGIFAIGDVAA 209
           L+     I VD   +T +P +FAIGD  +
Sbjct: 257 LD---QTIAVDAYLQTSVPNVFAIGDCIS 282

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  151 bits (384), Expect = 4e-42
 Identities = 67/213 (31%), Positives = 106/213 (49%), Gaps = 14/213 (6%)

Query: 7   VTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVAD 60
             +ID    T     L T   + LKY  L++A G  A+R P  + G  L GV  + ++ +
Sbjct: 89  AHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP--VEGMDLAGVTPVTNLDE 146

Query: 61  ADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLLQRLFTPSLAQ 117
           A+ +  ++   +  K V+VGGG+IG+E+A +    W +DTT++   + ++    + SL+Q
Sbjct: 147 AEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQ 206

Query: 118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 177
                 ++N V    G  +  LE G +G+VA V + D  T+DAD +++  G  P      
Sbjct: 207 MLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLDADLVILAAGVSPNTQLAR 264

Query: 178 RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 209
             GL     G I VD + RT  P IFA GD   
Sbjct: 265 DAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVT 297

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  150 bits (381), Expect = 6e-41
 Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 13/210 (6%)

Query: 7   VTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           V  I+ E++T     + TN      Y  LI++ G                +  +R+V D 
Sbjct: 116 VVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDT 175

Query: 62  DALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 119
           D + + ++  K +   V+GGG+IG+E+        ++ T++   N ++       +A   
Sbjct: 176 DRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYV 234

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 179
            +  + + V+ V    +  LE   +G V  V+L+ GS I  D +++ IG +P  S  +  
Sbjct: 235 HEHMKNHDVELVFEDGVDALE--ENGAV--VRLKSGSVIQTDMLILAIGVQPESSLAKGA 290

Query: 180 GLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 208
           GL     G I+V+ +F+T  P I+AIGD  
Sbjct: 291 GLALGVRGTIKVNEKFQTSDPHIYAIGDAI 320

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  147 bits (374), Expect = 8e-41
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 9/207 (4%)

Query: 7   VTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI 65
           V  +D            K  ++  L+ A G +    P   G  L GV       DA A+ 
Sbjct: 82  VIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQV-PAIEGVNLKGVFTADLPPDALAIR 140

Query: 66  SSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 123
             +E  K + VV++GGGYIG+E+A A      + T+I     +L+R F   +    E+  
Sbjct: 141 EYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKL 200

Query: 124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN- 182
            +  V          +E   + RV  V + D     A+ +++  G KP +   +++G+  
Sbjct: 201 -KKHVNLRLQEITMKIE--GEERVEKV-VTDAGEYKAELVILATGIKPNIELAKQLGVRI 256

Query: 183 SSVGGIQVDGQFRTRMPGIFAIGDVAA 209
              G I  + + +T +  ++A GDVA 
Sbjct: 257 GETGAIWTNEKMQTSVENVYAAGDVAE 283

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  147 bits (374), Expect = 9e-41
 Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 17/213 (7%)

Query: 7   VTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           +T+I  ++       L++   ++  Y  LI++ G          G  L  ++ +R    A
Sbjct: 79  ITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIP-GKDLDNIYLMRGRQWA 137

Query: 62  DALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 119
             L       +   VVV+G GYIG+E A A        T+I   +  L            
Sbjct: 138 IKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVL 197

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE-- 177
            +  + N +    G +++  E   DGRV  V + D +  DAD +V+ +G +P  +  +  
Sbjct: 198 TEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGT 254

Query: 178 -RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 209
             +  N   G I+ D   RT  P +FA+GD   
Sbjct: 255 LELHPN---GLIKTDEYMRTSEPDVFAVGDATL 284

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  147 bits (374), Expect = 2e-40
 Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 13/211 (6%)

Query: 7   VTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           VT +D EK+        T       Y  L++ATG        + G  L GVH ++ + DA
Sbjct: 116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWE-GRDLQGVHLLKTIPDA 174

Query: 62  DALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 119
           + ++ +LE  K + V ++GGG IG+E+A   V       +I   +H+   ++   +A+  
Sbjct: 175 ERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIG-TIYDGDMAEYI 233

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 179
            +   ++ ++ +   ++K  +   + RV AV+  D  T  AD +++ +G KP     E  
Sbjct: 234 YKEADKHHIEILTNENVKAFK--GNERVEAVET-DKGTYKADLVLVSVGVKPNTDFLEGT 290

Query: 180 GLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 209
            +  +  G I+V+   +T +  ++A GD A 
Sbjct: 291 NIRTNHKGAIEVNAYMQTNVQDVYAAGDCAT 321

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score =  146 bits (370), Expect = 5e-40
 Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 24/221 (10%)

Query: 7   VTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFP----------EKIGGYLPGVH 53
           V SID + +T   L+     +  Y  LI ATG      P           +    L  + 
Sbjct: 115 VQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQ 174

Query: 54  YIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF 111
           +++   ++  +I+ LE    K+V VVG GYIG+E+A A      +  +I   +  L   +
Sbjct: 175 FVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYY 234

Query: 112 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171
              L     +  +++G++   G ++K +    +G+V  + + D +  D D +++ +G +P
Sbjct: 235 DRDLTDLMAKNMEEHGIQLAFGETVKEVA--GNGKVEKI-ITDKNEYDVDMVILAVGFRP 291

Query: 172 TVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 209
             +       +  N   G   V+ +  T +PG++AIGD A 
Sbjct: 292 NTTLGNGKIDLFRN---GAFLVNKRQETSIPGVYAIGDCAT 329

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  142 bits (360), Expect = 2e-39
 Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 16/212 (7%)

Query: 5   DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 64
           +    ID  ++ +IT  G++  Y +L++ATG  A      I G    +  +R + DAD +
Sbjct: 81  EEAKLIDRGRKVVITEKGEV-PYDTLVLATGARAREPQ--IKG-KEYLLTLRTIFDADRI 136

Query: 65  ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
             S+E + + +++GGG+IG+E+A           +I      L       L+   + + +
Sbjct: 137 KESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLE 194

Query: 125 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 184
           + GVKF   + +   EA  +G      L +   I+    +  IG  P V    R G+   
Sbjct: 195 ETGVKFFLNSELL--EANEEGV-----LTNSGFIEGKVKICAIGIVPNVDLARRSGI--H 245

Query: 185 VG-GIQVDGQFRTRMPGIFAIGDVAAFPLKMY 215
            G GI +D  FRT    ++AIGD A +   + 
Sbjct: 246 TGRGILIDDNFRTSAKDVYAIGDCAEYSGIIA 277

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  142 bits (361), Expect = 5e-39
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 19/211 (9%)

Query: 7   VTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 61
           V +I+ E+QT       TN      Y  LI++ G +       +G        +R++ D 
Sbjct: 81  VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGAS----ANSLGFESDITFTLRNLEDT 136

Query: 62  DALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 119
           DA+   ++  +  KV+VVG GY+ +EV        L  T+I   + +  +L    + Q  
Sbjct: 137 DAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKIN-KLMDADMNQPI 195

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 179
                +  + +     I  +          +  + G     D I+ G+G  P     E  
Sbjct: 196 LDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHYDMIIEGVGTHPNSKFIESS 249

Query: 180 GLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 209
            +     G I V+ +F T +P I+AIGD+A 
Sbjct: 250 NIKLDRKGFIPVNDKFETNVPNIYAIGDIAT 280

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  140 bits (354), Expect = 2e-37
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 31/230 (13%)

Query: 7   VTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVAD 60
           V +ID   +      L+  S     Y +L+++ G      P  I G   P  H +R++ D
Sbjct: 81  VVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP--IPGVDNPLTHSLRNIPD 138

Query: 61  ADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
            D ++ +++    +   VVGGG+IG+E+  +     + TT++   + ++       +A  
Sbjct: 139 MDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGF 197

Query: 119 YEQLYQQNGVKFVKGASIKNLE------------------AGSDGRVAAVKLEDGSTIDA 160
             Q  +  GV    G ++  +                       G ++   L +G  ++ 
Sbjct: 198 AHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLT-LSNGELLET 256

Query: 161 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 209
           D +++ IG +P        GL    +GGI+V+   +T  P I+A+GD   
Sbjct: 257 DLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVE 306

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  110 bits (277), Expect = 4e-27
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 25/189 (13%)

Query: 31  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKKVVVVGGGYIGME 85
           ++A G      P      + G+            ISS     ++++KK+ +VG GYI +E
Sbjct: 146 LIAVGNKPVFPP------VKGIENT---------ISSDEFFNIKESKKIGIVGSGYIAVE 190

Query: 86  VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 145
           +        +D+ I    N +L R F  S+    E   ++N +  V  A +  ++  SD 
Sbjct: 191 LINVIKRLGIDSYIFARGNRIL-RKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDK 249

Query: 146 RVAAVKLEDGSTI-DADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIF 202
            ++ + L DG      D ++  +G  P       E++ + ++   I VD   RT +  I+
Sbjct: 250 NLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIY 308

Query: 203 AIGDVAAFP 211
           A+GD     
Sbjct: 309 AVGDCCMVK 317

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  110 bits (277), Expect = 4e-27
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 18  ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 71
           ++ +G+ +    +++ATG             + G             ++S     LEK  
Sbjct: 146 LSVTGERISAEKILIATGAKIVSNSA-----IKGSDLC---------LTSNEIFDLEKLP 191

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
           K +V+VGGGYIG+E A    G  + TT++   + +L R F   L Q         G+  +
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISII 250

Query: 132 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 187
             A++  +++  +     V L +G TI AD +++  G  P  +    ER G  +N   G 
Sbjct: 251 YEATVSQVQSTENCYN--VVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEF-GA 307

Query: 188 IQVDGQFRTRMPGIFAIGDV 207
           + VD +  T +  I+A+GDV
Sbjct: 308 VVVDEKMTTNVSHIWAVGDV 327

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  109 bits (274), Expect = 8e-27
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 28/187 (14%)

Query: 31  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 84
           ++ATG   S  P+     +PGV Y          I S     L    ++V VVG GYIG+
Sbjct: 136 LIATGGRPSH-PD-----IPGVEYG---------IDSDGFFALPALPERVAVVGAGYIGV 180

Query: 85  EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 144
           E+     G    T +    +  L   F P +++   ++    G +    A  K +   +D
Sbjct: 181 ELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD 239

Query: 145 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMPG 200
           G +  ++LEDG +   D ++  IG +P       E  G   N   G I VD    T + G
Sbjct: 240 GSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEK-GYIVVDKYQNTNIEG 297

Query: 201 IFAIGDV 207
           I+A+GD 
Sbjct: 298 IYAVGDN 304

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  108 bits (273), Expect = 2e-26
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 31/190 (16%)

Query: 31  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 84
           ++ATG      P      +PG+ +          ISS     L +  ++V+ VGGG+I +
Sbjct: 160 LLATGSWPQM-PA-----IPGIEHC---------ISSNEAFYLPEPPRRVLTVGGGFISV 204

Query: 85  EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141
           E A    A        T+ +  N +L R F  ++ +   +    NG++ +   +   +  
Sbjct: 205 EFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGIEIMTNENPAKVSL 263

Query: 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTR 197
            +DG    V  E G T+D D +++ IG  P  +      VG  L    GG+QVD   RT 
Sbjct: 264 NTDGSKH-VTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPK-GGVQVDEFSRTN 321

Query: 198 MPGIFAIGDV 207
           +P I+AIGD+
Sbjct: 322 VPNIYAIGDI 331

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  106 bits (268), Expect = 5e-26
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 27/200 (13%)

Query: 18  ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 71
           +  SGK +    +++A G   S   + +    PG             I+S     L    
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSP-HDAL----PGHELC---------ITSNEAFDLPALP 170

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
           + +++ GGGYI +E A    G  + TT+I+    +L   F   + +      ++ G++ +
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRIL 229

Query: 132 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGG 187
               I+++ A +DGR           I AD +++ +G  P  +    E  G   N   G 
Sbjct: 230 CEDIIQSVSADADGRRV-ATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNEL-GA 287

Query: 188 IQVDGQFRTRMPGIFAIGDV 207
           I VD   RT  PGI+A+GDV
Sbjct: 288 IIVDAFSRTSTPGIYALGDV 307

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  107 bits (269), Expect = 6e-26
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 31/190 (16%)

Query: 31  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 84
           ++ATG             + G             I+S     L++A K+ + VGGGYI +
Sbjct: 156 LLATGSWPQH-LG-----IEGDDLC---------ITSNEAFYLDEAPKRALCVGGGYISI 200

Query: 85  EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 141
           E A    A         + +  + +L R F   L ++  +  + NG+      +   +  
Sbjct: 201 EFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRTHENPAKVTK 259

Query: 142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTR 197
            +DG    V  E G+  D D +++ IG  P       E+ G  +  + G I+VD   +T 
Sbjct: 260 NADGTRH-VVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN-GAIKVDAYSKTN 317

Query: 198 MPGIFAIGDV 207
           +  I+AIGDV
Sbjct: 318 VDNIYAIGDV 327

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  104 bits (261), Expect = 5e-25
 Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 26/187 (13%)

Query: 31  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 84
           +VATG  A   PE I    PG               S     LE+  KKVVVVG GYIG+
Sbjct: 153 LVATGGKAIF-PENI----PGFELG---------TDSDGFFRLEEQPKKVVVVGAGYIGI 198

Query: 85  EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 144
           E+A    G   +T ++     +L R F   +       Y + G+   K + I  +E   +
Sbjct: 199 ELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVE 257

Query: 145 GRVAAVKLEDGSTI-DADTIVIGIGAKPTVS-PFERVG--LNSSVGGIQVDGQFRTRMPG 200
                + + D  +I D D ++  IG K  +    E VG  LNS    I  D    T +P 
Sbjct: 258 TDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH-DQIIADEYQNTNVPN 316

Query: 201 IFAIGDV 207
           I+++GDV
Sbjct: 317 IYSLGDV 323

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  101 bits (255), Expect = 4e-24
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 28/187 (14%)

Query: 31  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 84
           ++ATG      P      LPG             I+S     L++  K+V ++G GYIG+
Sbjct: 135 VIATGGRPIV-PR-----LPGAELG---------ITSDGFFALQQQPKRVAIIGAGYIGI 179

Query: 85  EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 144
           E+A     +  + T++  E+ LL   F P L+    +     G++     ++  LE  + 
Sbjct: 180 ELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQ 238

Query: 145 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMPG 200
           G    V  +       D+++  +G  P       E  G  + S+ G +  D    T +PG
Sbjct: 239 GTTL-VAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSN-GMVPTDAYQNTNVPG 296

Query: 201 IFAIGDV 207
           ++A+GD+
Sbjct: 297 VYALGDI 303

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 98.0 bits (245), Expect = 7e-23
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 13/150 (8%)

Query: 67  SLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 123
           SL++   K +VVG GYIG+E A     +G   + T++   + +L R F   +A+      
Sbjct: 182 SLDREPGKTLVVGAGYIGLECAGFLKGLG--YEPTVMV-RSIVL-RGFDQQMAELVAASM 237

Query: 124 QQNGVKFVKGASIKNLEAGSDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPF--E 177
           ++ G+ F++     ++E   DG++      V+  + S    DT++  IG K  V      
Sbjct: 238 EERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLP 297

Query: 178 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 207
             G+      I VD Q  T +  I+A+GD+
Sbjct: 298 NAGVTVQKDKIPVDSQEATNVANIYAVGDI 327

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 98.0 bits (245), Expect = 8e-23
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 31/192 (16%)

Query: 31  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 84
           ++ATG       +     + G          +  I+S     L+++  K +VVG  Y+ +
Sbjct: 152 VIATGGRPRYPTQ-----VKG--------ALEYGITSDDIFWLKESPGKTLVVGASYVAL 198

Query: 85  EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 144
           E A    G  LDTT++     L  R F   ++    +  + +G +F+KG    +++    
Sbjct: 199 ECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT 256

Query: 145 GRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFR 195
            ++  V  ED +     T   DT++  IG  P       E+ G   N     I VD Q  
Sbjct: 257 NQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEA 315

Query: 196 TRMPGIFAIGDV 207
           T +P I+AIGDV
Sbjct: 316 TSVPHIYAIGDV 327

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 96.8 bits (242), Expect = 2e-22
 Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 35/209 (16%)

Query: 18  ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 71
           I  SGK      +++ATG   S  P +    +PG             I+S     LE+  
Sbjct: 140 IEVSGKKYTAPHILIATGGMPST-PHESQ--IPGASLG---------ITSDGFFQLEELP 187

Query: 72  KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 129
            + V+VG GYI +E+A   +A+G    T+++   + +L R F   ++    +  +  GV+
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVE 244

Query: 130 FVKGASIKNLEAGSDGRVAAV-------KLEDGSTIDADTIVIGIGAKPTVSPF--ERVG 180
            +K + +K ++    G   ++               D D ++  IG  P        ++G
Sbjct: 245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLG 304

Query: 181 --LNSSVGGIQVDGQFRTRMPGIFAIGDV 207
              +   G I VD    T + GI+A+GDV
Sbjct: 305 IQTDDK-GHIIVDEFQNTNVKGIYAVGDV 332

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 95.8 bits (239), Expect = 6e-22
 Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 21  SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK--AKKVVVVG 78
           +GK+ K  +LI+A G             +PGV+       A  +   L+      VVVVG
Sbjct: 169 AGKVFKAKNLILAVGAGPGTLD------VPGVNAKGVFDHATLVEE-LDYEPGSTVVVVG 221

Query: 79  GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136
           G    +E      A G +  T ++     L   +             ++ G++ + G+++
Sbjct: 222 GSKTAVEYGCFFNATGRR--TVMLVRTEPLK-LIKDNETRAYVLDRMKEQGMEIISGSNV 278

Query: 137 KNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF-ERVGLN-SSVGGIQVD 191
             +E  ++GRV AV          I+ D + +G+G +P  +   + +GL+    G + V+
Sbjct: 279 TRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVN 338

Query: 192 GQFRTRMPGIFAIGDVAAFP 211
              +T +P ++A+GD+   P
Sbjct: 339 EYLQTSVPNVYAVGDLIGGP 358

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 94.9 bits (237), Expect = 9e-22
 Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 37/216 (17%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
            T+ D        +         ++VATG +           LP         D + +++
Sbjct: 133 ATAADGSTSEHEADV--------VLVATGASPRI--------LPSAQP-----DGERILT 171

Query: 67  S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
                 L+     ++VVG G  G E       +G  +  T++  ++H+L        A  
Sbjct: 172 WRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELG--VPVTVVASQDHVLP-YEDADAALV 228

Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF-- 176
            E+ + + GV+  K A   ++     G    V + DG T++    ++ IG+ P  S    
Sbjct: 229 LEESFAERGVRLFKNARAASVTRTGAG--VLVTMTDGRTVEGSHALMTIGSVPNTSGLGL 286

Query: 177 ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 211
           ERVG+    G  + VD   RT   GI+A GD     
Sbjct: 287 ERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 93.4 bits (233), Expect = 3e-21
 Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 39/197 (19%)

Query: 31  IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 84
           ++ATG             +PG        D +  ISS     L     K +VVG  Y+ +
Sbjct: 178 LIATGERPRY-LG-----IPG--------DKEYCISSDDLFSLPYCPGKTLVVGASYVAL 223

Query: 85  EVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNL 139
           E A   A +G  LD T++   + LL R F   +A +  +  +++G+KF++      ++ +
Sbjct: 224 ECAGFLAGIG--LDVTVMV-RSILL-RGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 279

Query: 140 EAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQV 190
           EAG+ GR+  V  +  ++      + +T+++ IG          E VG  +N   G I V
Sbjct: 280 EAGTPGRLR-VVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPV 338

Query: 191 DGQFRTRMPGIFAIGDV 207
             + +T +P I+AIGD+
Sbjct: 339 TDEEQTNVPYIYAIGDI 355

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 89.9 bits (224), Expect = 9e-21
 Identities = 36/224 (16%), Positives = 68/224 (30%), Gaps = 34/224 (15%)

Query: 2   IYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV--HYIR 56
            Y+  V  I  +      ++T          +++ATG     FP      +P V  +Y +
Sbjct: 78  YYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQE-EFPS-----IPNVREYYGK 131

Query: 57  DVA-----DADALISSLEKAKKVVVVGGGYIG-MEVAAAAVGWKLDTTIIFPENHLLQRL 110
            +      D         K + ++++       + +      W  D  I           
Sbjct: 132 SLFSCPYCDGW-----ELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATN-------- 178

Query: 111 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 170
               L+Q          +  +  + I+ L+ G  G +  V+   G  I+     I     
Sbjct: 179 -GNELSQTIMDELSNKNIPVITES-IRTLQ-GEGGYLKKVEFHSGLRIERAGGFIVPTFF 235

Query: 171 PTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
                 E++G    S G   +D   RT    I+  G+       
Sbjct: 236 RPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS 279

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 26/212 (12%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
           V + + ++    T          +I+A+G   ++        LPGV Y     D     +
Sbjct: 121 VKTDEGKEIEAETRY--------MIIASGAETAKLR------LPGVEYCLTSDDIFGYKT 166

Query: 67  SLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 123
           S  K  + +V++G GYIG+E+A+    +G +    II   +  L  L    +      L 
Sbjct: 167 SFRKLPQDMVIIGAGYIGLEIASIFRLMGVQT--HIIEMLDRALITLEDQDIVN---TLL 221

Query: 124 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKP-TVSPFERV 179
               +     + +  ++   D     +         +I  +++V+  G +P        +
Sbjct: 222 SILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREI 281

Query: 180 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 211
           GL+ S  GI VD   +T +P +FA GD     
Sbjct: 282 GLSISKTGIVVDETMKTNIPNVFATGDANGLA 313

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 89.3 bits (222), Expect = 4e-20
 Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 34/223 (15%)

Query: 10  IDIEKQ-----TLITNSGKLLKYGSLIVATGCTA--SRFPEKIGGY----LPGVHYIRDV 58
               K         TN+G + +  ++++A G  A   R   ++G         V+Y   V
Sbjct: 98  TKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--V 155

Query: 59  ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFT--PS 114
              +       K K+VV+VGGG        +A+ W +          L+ R   F     
Sbjct: 156 KSVEDF-----KGKRVVIVGGG-------DSALDWTVGLIKNAASVTLVHRGHEFQGHGK 203

Query: 115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAK 170
            A   E+      +       + ++E  S+G +  V L        T++AD ++I IG K
Sbjct: 204 TAHEVERARANGTIDVYLETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFK 262

Query: 171 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
             + P  R  L      + VD   +T + G++A GD+A +P K
Sbjct: 263 SNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK 305

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 88.4 bits (220), Expect = 6e-20
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 40/224 (17%)

Query: 11  DIEKQ----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG--------VHYIRDV 58
            +E++     + T+ G      ++I+A G  A   P +IG   PG        V+Y   V
Sbjct: 90  TLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFE-PRRIG--APGEREFEGRGVYYA--V 144

Query: 59  ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LF--TPS 114
                      + K+V++VGGG        +AV W L+         L+ R   F    +
Sbjct: 145 KSKAEF-----QGKRVLIVGGG-------DSAVDWALNLLDTARRITLIHRRPQFRAHEA 192

Query: 115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGA 169
             +   + +++  ++ +    ++ +E   D RV    +    T     ++ D ++I  G 
Sbjct: 193 SVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELALEVDAVLILAGY 250

Query: 170 KPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
              + P    GL      I+VD    T +PG++A GD+  +P K
Sbjct: 251 ITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK 294

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)

Query: 67  SLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 125
           SL     K +V+G  Y+ +E A        D T++   + LL R F   +A++     + 
Sbjct: 281 SLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMV-RSILL-RGFDQQMAEKVGDYMEN 338

Query: 126 NGVKFVKGASIKN--------LEAGSDGR-VAAVKLEDGST--IDADTIVIGIGAKPTVS 174
           +GVKF K               E    G  +      DG     + +T++  +G +P +S
Sbjct: 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS 398

Query: 175 PF--ERVG--LNSSVGGIQVDGQFRTRMPGIFAIGDV 207
               E VG  L+ + G +      +T +  ++AIGD+
Sbjct: 399 KVLCETVGVKLDKN-GRVVCTDDEQTTVSNVYAIGDI 434

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 86.8 bits (216), Expect = 5e-19
 Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 29/214 (13%)

Query: 9   SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS- 67
               E++ L+  +G+ L+   +++ATG              P         D + +++S 
Sbjct: 112 RFLSERKVLVEETGEELEARYILIATGSAPLI--------PPWAQV-----DYERVVTST 158

Query: 68  ----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 120
                 +  K+++VVGGG IG+E+      +G +    ++   + +L       +++  E
Sbjct: 159 EALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAE--VIVLEYMDRILP-TMDLEVSRAAE 215

Query: 121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FER 178
           +++++ G+    G  +  +   + G  A V+LE G  ++AD +++ +G +P       E 
Sbjct: 216 RVFKKQGLTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLEN 273

Query: 179 VGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 211
            GL++   G I VD   RTR+P I+AIGDV   P
Sbjct: 274 AGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 85.6 bits (213), Expect = 1e-18
 Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 21/197 (10%)

Query: 21  SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKA-KKVVVVG 78
            G+ ++   L++ATG ++          LP +     V  + +AL  + +   + +VVVG
Sbjct: 129 DGQRIQCEHLLLATGSSSVE--------LPMLPLGGPVISSTEAL--APKALPQHLVVVG 178

Query: 79  GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 136
           GGYIG+E+      +G ++  +++     +L   +   L     +  ++ G+    G S+
Sbjct: 179 GGYIGLELGIAYRKLGAQV--SVVEARERILP-TYDSELTAPVAESLKKLGIALHLGHSV 235

Query: 137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQF 194
           +  E G    +A         ++AD +++ +G +P    F  E + L  +   I +D + 
Sbjct: 236 EGYENG--CLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293

Query: 195 RTRMPGIFAIGDVAAFP 211
           +T M  ++AIGDVA  P
Sbjct: 294 QTSMHNVWAIGDVAGEP 310

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 84.4 bits (209), Expect = 3e-18
 Identities = 45/295 (15%), Positives = 84/295 (28%), Gaps = 67/295 (22%)

Query: 3   YQDPVTSIDIEKQTLIT----NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 58
            +  V  ID +   +       S    +Y  +IV  G       E + G+    + + + 
Sbjct: 74  QEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHL--ATELVKGWDKYGYSVCEP 131

Query: 59  ADADAL---ISSLEKAKKVV--------------VVGGGYIGMEVAAAAVGWKL------ 95
             A  L   + S +     +              V        + A     +++      
Sbjct: 132 EFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHG 191

Query: 96  ---------DTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 144
                       +    P  +L     +P+  +    +Y Q G+K V    IK +     
Sbjct: 192 YFKKKGMLDKVHVTVFSPGEYLSD--LSPNSRKAVASIYNQLGIKLVHNFKIKEIREH-- 247

Query: 145 GRVAAVKLEDGSTIDADTIVI--GIGAKPTV--SPFERVGLNSSVGGIQVDGQFR-TRMP 199
                +  E G+TI AD  ++       P +  S      L    G I  D      +  
Sbjct: 248 ----EIVDEKGNTIPADITILLPPYTGNPALKNSTP---DLVDDGGFIPTDLNMVSIKYD 300

Query: 200 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC---IKALLSAQTHTYDYLPY 251
            ++A+GD  +       +         A  + +     +   L   T    Y P 
Sbjct: 301 NVYAVGDANSMT---VPKLGY-----LAVMTGRIAAQHLANRLGVPTKVDKYYPT 347

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 24/118 (20%)

Query: 72  KKVVVVGGGYIGMEVAAAA---VGWKLDTTIIFPENHLLQRLFTPSL------------- 115
            KV+V+GG +  +  A      VG K D  +I          F P+L             
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS---YFRPALPHVAIGVRDVDEL 58

Query: 116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKP 171
                +   + G++F +G  ++ ++A     +      DGS    + D +++GIGA  
Sbjct: 59  KVDLSEALPEKGIQFQEGT-VEKIDA--KSSMVYYTKPDGSMAEEEYDYVIVGIGAHL 113

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 83.7 bits (208), Expect = 6e-18
 Identities = 46/211 (21%), Positives = 86/211 (40%), Gaps = 25/211 (11%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
           V   D   +++  ++         I+ATG +           +PG     +V   +  I 
Sbjct: 123 VDLNDGGTESVTFDN--------AIIATGSSTRL--------VPGTSLSANVVTYEEQIL 166

Query: 67  SLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 124
           S E  K +++ G G IGME        G  +D TI+      L       +++  E+ ++
Sbjct: 167 SRELPKSIIIAGAGAIGMEFGYVLKNYG--VDVTIVEFLPRALP-NEDADVSKEIEKQFK 223

Query: 125 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGL 181
           + GV  +    ++++  G       V  +  +  + A+ ++  IG  P V  +  ++ G+
Sbjct: 224 KLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGV 283

Query: 182 N-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 211
             +    I VD   RT +  I+AIGDV    
Sbjct: 284 ALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 82.2 bits (204), Expect = 2e-17
 Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 23/203 (11%)

Query: 16  TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKV 74
            L     +++ +   +VATG + +  P      +PG+         +AL  + +   +++
Sbjct: 128 RLNEGGERVVMFDRCLVATGASPAVPP------IPGLKESPYWTSTEAL--ASDTIPERL 179

Query: 75  VVVGGGYIGMEVAA--AAVGWKLDTTIIFPE-NHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
            V+G   + +E+A   A +G K+  T++    N L  R   P++ +     ++  G++ +
Sbjct: 180 AVIGSSVVALELAQAFARLGSKV--TVL--ARNTLFFR-EDPAIGEAVTAAFRAEGIEVL 234

Query: 132 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGI 188
           +      +       V  +    G  + AD +++  G  P       +  G+  ++ G I
Sbjct: 235 EHTQASQVAHMDGEFV--LTTTHG-ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAI 291

Query: 189 QVDGQFRTRMPGIFAIGDVAAFP 211
            +D   RT  P I+A GD    P
Sbjct: 292 VIDQGMRTSNPNIYAAGDCTDQP 314

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 33/206 (16%)

Query: 20  NSGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA-KK 73
           +S +   + + I+ATG      P      +I            +    AL  +L +  K 
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELPNFKFSNRI------------LDSTGAL--NLGEVPKS 172

Query: 74  VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
           +VV+GGGYIG+E+    A  G K+  TI+     +L   F   +A   ++  ++ GV+ V
Sbjct: 173 LVVIGGGYIGIELGTAYANFGTKV--TILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVV 229

Query: 132 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLN-SSV 185
             A  K  E   DG    V  E      TIDAD +++ +G +P       E++G+  ++ 
Sbjct: 230 TNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNR 287

Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFP 211
           G I+VD Q RT +P IFAIGD+   P
Sbjct: 288 GLIEVDQQCRTSVPNIFAIGDIVPGP 313

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 44/220 (20%), Positives = 93/220 (42%), Gaps = 32/220 (14%)

Query: 7   VTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVA 59
           V+    +       +G+  ++ + + I+A G   ++ P      +I            + 
Sbjct: 127 VSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPRI------------ID 174

Query: 60  DADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 116
            + AL  +L++   K++++GGG IG+E+    + +G +L   ++   + L+Q      L 
Sbjct: 175 SSGAL--ALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRL--DVVEMMDGLMQ-GADRDLV 229

Query: 117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS 174
           + +++  +      +       +E   DG     +  +        D +++  G  P   
Sbjct: 230 KVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK 289

Query: 175 P--FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 211
               E+ G+  +  G I+VD Q RT +P I+AIGD+   P
Sbjct: 290 LISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP 329

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 81.8 bits (203), Expect = 3e-17
 Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 32/206 (15%)

Query: 21  SGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA--KK 73
            G+     SLI+ATG            E +                 AL   +E+   K+
Sbjct: 126 GGERYGAKSLILATGSEPLELKGFPFGEDV------------WDSTRAL--KVEEGLPKR 171

Query: 74  VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
           ++V+GGG +G+E+      +G ++  T+I     +L     P  A    +  ++ G++  
Sbjct: 172 LLVIGGGAVGLELGQVYRRLGAEV--TLIEYMPEILP-QGDPETAALLRRALEKEGIRVR 228

Query: 132 KGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVG 186
                   E   DG    ++  +G     +  D +++ +G KP       E+ G+     
Sbjct: 229 TKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDER 288

Query: 187 G-IQVDGQFRTRMPGIFAIGDVAAFP 211
           G I+V+ +  T +PG++AIGD A  P
Sbjct: 289 GFIRVNARMETSVPGVYAIGDAARPP 314

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 80.9 bits (200), Expect = 5e-17
 Identities = 39/239 (16%), Positives = 70/239 (29%), Gaps = 35/239 (14%)

Query: 3   YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVA 59
                  ID E Q +    G  + Y  L++ATG   +   E + G   +   V  I  V 
Sbjct: 77  IAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA--FENVPGSDPHEGPVQSICTVD 134

Query: 60  DADALISSLEKAKK----VVVVGGGYIGMEVAAAAVGWKLDT--------------TIIF 101
            A+   +  +   +    +V+           A      + +              T I 
Sbjct: 135 HAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFIT 194

Query: 102 PENHLLQRL--FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--- 156
            E ++                +  ++ G++      +  +E   +        E G    
Sbjct: 195 SEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVED--NKMYVTQVDEKGETIK 252

Query: 157 --TIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFR-TRMPGIFAIGDVAAFP 211
              +     ++    K  V     V    + GG + VD   R  +   IFA G   A P
Sbjct: 253 EMVLPVKFGMMIPAFKG-VPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIP 310

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 24/120 (20%)

Query: 68  LEKAKKVVVVGGGYIGMEVAAA---AVGWKLDTTIIFPENHLLQRLFTPSL--------- 115
           +  +  VV++G G  GM  A     A+G   + T+I   ++     F PS          
Sbjct: 1   MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF---QFVPSNPWVGVGWKE 57

Query: 116 ----AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171
               A       ++ G+ F+   S + ++A  + +   + L DG+T+  D ++I  G K 
Sbjct: 58  RDDIAFPIRHYVERKGIHFIA-QSAEQIDA--EAQ--NITLADGNTVHYDYLMIATGPKL 112

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 80.6 bits (200), Expect = 6e-17
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 40/221 (18%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
            T  D   Q + T +        +++ATG   +          PG+       D D ++S
Sbjct: 129 ATKADGGTQVIDTKN--------ILIATGSEVTP--------FPGITI-----DEDTIVS 167

Query: 67  S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
           S     L+K  +K+VV+G G IG+E+ +    +G  +  T +    H+        +++ 
Sbjct: 168 STGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADV--TAVEFLGHVGGVGIDMEISKN 225

Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTV 173
           ++++ Q+ G KF     +      SDG++  V +E  S      I  D +++ IG +P  
Sbjct: 226 FQRILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFT 284

Query: 174 SP--FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 211
                E +G+     G I V+ +F+T++P I+AIGDV A P
Sbjct: 285 KNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 78.4 bits (194), Expect = 1e-16
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 36/220 (16%)

Query: 11  DIEKQT----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG--------VHYIRDV 58
            +EKQ      +  + +     ++I+  G  A + P K+   L          +HY   V
Sbjct: 92  SVEKQADGVFKLVTNEETHYSKTVIITAGNGAFK-PRKLE--LENAEQYEGKNLHYF--V 146

Query: 59  ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
            D           ++V ++GGG        +AV W L    I  E  ++ R       + 
Sbjct: 147 DDLQKF-----AGRRVAILGGG-------DSAVDWALMLEPIAKEVSIIHRRDKFRAHEH 194

Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPTV 173
             +    + V  +       L    + ++  + LE+        ++ D +++  G   ++
Sbjct: 195 SVENLHASKVNVLTPFVPAELIG--EDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSL 252

Query: 174 SPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
            P +  GL+     I V     T + G FA GD+  +  K
Sbjct: 253 GPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK 292

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 79.5 bits (197), Expect = 2e-16
 Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 34/218 (15%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD----VADAD 62
           VT+   E+Q L   +        +++ATG   +         +PGV    D    V+   
Sbjct: 147 VTNEKGEEQVLEAKN--------VVIATGSDVAG--------IPGVEVAFDEKTIVSSTG 190

Query: 63  ALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 119
           AL  +LEK    ++VVGGG IG+E+ +  A +G K+  T++   + +L       +A++ 
Sbjct: 191 AL--ALEKVPASMIVVGGGVIGLELGSVWARLGAKV--TVVEFLDTILG-GMDGEVAKQL 245

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKPTVSP- 175
           +++  + G+ F  GA +       DG     +   G    T+DA+ ++I  G KP+    
Sbjct: 246 QRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGL 305

Query: 176 -FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 211
              + G+     G +++D  F+T + G++AIGDV   P
Sbjct: 306 GLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 38/219 (17%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
           V +I+ E   +            +I+ATG             LPGV       D   ++S
Sbjct: 128 VDTIEGENTVVKGKH--------IIIATGSDVKS--------LPGVTI-----DEKKIVS 166

Query: 67  S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
           S     L +  KK+VV+G GYIG+E+ +    +G +   T++   + ++       + ++
Sbjct: 167 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSE--VTVVEFASEIVP-TMDAEIRKQ 223

Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP 175
           +++  ++ G+KF     +  ++   DG    V+   G   + I+AD +++  G  P  S 
Sbjct: 224 FQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSG 283

Query: 176 --FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 211
              +++G+ +   G I V+ +F T + G++AIGDV   P
Sbjct: 284 LNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 36/218 (16%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP------EKIGGYLPGVHYIRDVAD 60
           VT +D  + T       +L   ++IVATG   + FP      EKI            V+ 
Sbjct: 128 VTPVDGLEGT--VKEDHILDVKNIIVATGSEVTPFPGIEIDEEKI------------VSS 173

Query: 61  ADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQ 117
             AL  SL++  K++ ++GGG IG+E+ +  + +G K+  T++  +  +        +A+
Sbjct: 174 TGAL--SLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKV--TVVEFQPQIGA-SMDGEVAK 228

Query: 118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPT 172
             ++  ++ G+ F     + + +   D  V  + +ED        ++A+ +++ +G +P 
Sbjct: 229 ATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY 288

Query: 173 VSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 207
           ++    E++GL     G + +D QF ++ P I  +GDV
Sbjct: 289 IAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 77.6 bits (192), Expect = 7e-16
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 36/217 (16%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
           VT+ D   Q L T +        +I+A+G             +P         D D ++ 
Sbjct: 131 VTAADGSSQVLDTEN--------VILASGSKPVE--------IPPAPV-----DQDVIVD 169

Query: 67  S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
           S      +    K+ V+G G IG+E+ +  A +G ++  T++   +  L       +A+ 
Sbjct: 170 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEV--TVLEAMDKFLP-AVDEQVAKE 226

Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSP-- 175
            +++  + G+K + GA +   E  +    V  V  E   +   D +++ +G +P  +   
Sbjct: 227 AQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLL 286

Query: 176 FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 211
               G+     G I VD    T +PG++AIGDV    
Sbjct: 287 AADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 76.4 bits (189), Expect = 2e-15
 Identities = 44/215 (20%), Positives = 91/215 (42%), Gaps = 38/215 (17%)

Query: 7   VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 66
           V  +D +++ L T           I+ATG   +         LP + +     D   ++S
Sbjct: 125 VNGLDGKQEMLETKK--------TIIATGSEPTE--------LPFLPF-----DEKVVLS 163

Query: 67  S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
           S     L +  K +VV+GGG IG+E+ +  A +G ++  T++              +   
Sbjct: 164 STGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEV--TVVEFAPRCAP-TLDEDVTNA 220

Query: 119 YE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP 175
               L +   +KF+    +       D     V+ ++G   T+  + +++ +G +P    
Sbjct: 221 LVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGG 280

Query: 176 F--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 207
              +++ +  +  G +++   F T +P ++AIGDV
Sbjct: 281 LGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 74.5 bits (184), Expect = 3e-15
 Identities = 47/225 (20%), Positives = 69/225 (30%), Gaps = 49/225 (21%)

Query: 2   IYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----GVHY- 54
             +  VT          +  + G+    G LI+A G T    PE I G        V + 
Sbjct: 74  WVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD-ELPE-IAGLRERWGSAVFHC 131

Query: 55  -------IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107
                  +                 K+ V+    + +  A     W   T          
Sbjct: 132 PYCHGYELDQ--------------GKIGVIAASPMAIHHALMLPDWGETTFFT------- 170

Query: 108 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 167
             +  P   Q    L    GV  V+   I+ +   +D     V L DG +I    +    
Sbjct: 171 NGIVEPDADQH-ALL-AARGV-RVETTRIREIAGHAD-----VVLADGRSIALAGLFTQP 222

Query: 168 GAKPTVSPFERVGL----NSSVGGIQVDGQFRTRMPGIFAIGDVA 208
             + TV   E++G           I  D   +T   GIFA GDVA
Sbjct: 223 KLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVA 267

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 74.2 bits (183), Expect = 8e-15
 Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 39/218 (17%)

Query: 12  IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS---- 67
           +++ TL  +    +    +++ATG   +        Y   +           L+++    
Sbjct: 122 LDEHTLQVDDHSQVIAKRIVIATGSRPN--------YPEFLAA-----AGSRLLTNDNLF 168

Query: 68  -LEKA-KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQL 122
            L    K V V G G IG+E+  A        +   +      +   L    + +  E+ 
Sbjct: 169 ELNDLPKSVAVFGPGVIGLELGQA---LSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKT 224

Query: 123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVG 180
           + +    F   A + +     D        + G   T     ++   G K  V   +++G
Sbjct: 225 FNEEF-YFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV---DKLG 280

Query: 181 L-NSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFP 211
           L N+S+          D    +T +  IF  GD     
Sbjct: 281 LENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL 318

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 51/222 (22%), Positives = 83/222 (37%), Gaps = 34/222 (15%)

Query: 7   VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP--------GVHYIR 56
           +     E     + T SG +LK  S+I+ATG         +   +P        GV Y  
Sbjct: 293 LVPAATEGGLHQIETASGAVLKARSIIIATGAK----WRNMN--VPGEDQYRTKGVTY-- 344

Query: 57  DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 116
                D     L K K+V V+GGG  G+E A    G     T++         +    + 
Sbjct: 345 -CPHCDG---PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL----EFAPEMKADQVL 396

Query: 117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKP 171
           Q  +++     V  +  A    ++ G   +V  ++  D  +     +    I + IG  P
Sbjct: 397 Q--DKVRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLP 453

Query: 172 TVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
                E     + +G I +D +  T + G+FA GD    P K
Sbjct: 454 NTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK 495

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 57/227 (25%), Positives = 89/227 (39%), Gaps = 40/227 (17%)

Query: 5   DPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP--------GVHY 54
             +    +E     + T SG +LK  S+IVATG         +   +P        GV Y
Sbjct: 80  SKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK----WRNMN--VPGEDQYRTKGVTY 133

Query: 55  IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS 114
                  D     L K K+V V+GGG  G+E A       +D   I     LL+    P 
Sbjct: 134 ---CPHCDG---PLFKGKRVAVIGGGNSGVEAA-------IDLAGIVEHVTLLEFA--PE 178

Query: 115 L-AQRY--EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIG 166
           + A +   ++L     V  +  A    ++ G   +V  ++  D  +     I+   I + 
Sbjct: 179 MKADQVLQDKLRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIHNIELAGIFVQ 237

Query: 167 IGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
           IG  P  +  E     + +G I +D +  T + G+FA GD    P K
Sbjct: 238 IGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 67.9 bits (167), Expect = 4e-13
 Identities = 55/237 (23%), Positives = 85/237 (35%), Gaps = 55/237 (23%)

Query: 2   IYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP--------GV 52
                V SI   +    I  +        +I+ TG T     + +G  +         G 
Sbjct: 89  REGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTT----HKHLG--VKGESEYFGKGT 142

Query: 53  HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENHL 106
            Y    +  D     L K K+VV +GGG  G   A         V      TII      
Sbjct: 143 SY---CSTCDG---YLFKGKRVVTIGGGNSGAIAAISMSEYVKNV------TII----EY 186

Query: 107 LQRLFTPSLAQRYEQLYQQ----NGVKFVKGASIKNLEAGSDGRVAAVKLEDGST----- 157
           + +          E  Y Q      + ++  A +  +  G   +V  VK +D +T     
Sbjct: 187 MPKY-------MCENAYVQEIKKRNIPYIMNAQVTEIV-GDGKKVTGVKYKDRTTGEEKL 238

Query: 158 IDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPLK 213
           I+ D + I +G  P  S  +  G+     G I VD + RT +PG++A GDV +    
Sbjct: 239 IETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNFA 295

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 46/229 (20%), Positives = 73/229 (31%), Gaps = 28/229 (12%)

Query: 3   YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-----GVHYIRD 57
             D  T ID +K+ + T  G    Y   +VA G       +KI GY         H  + 
Sbjct: 73  VHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELI--YDKIEGYSEEAAAKLPHAWKA 130

Query: 58  VADADAL---ISSLEKAKKVVVV---------GGGYIGMEVAAAAV---GWKLDTTIIFP 102
                 L   +  +     VV+           G Y      A  +          I+  
Sbjct: 131 GEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDS 190

Query: 103 ENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 161
                 Q  F+    + Y    +   +++  G     ++   DG    V+   G    AD
Sbjct: 191 SQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKV--DGGEMMVETAFGDEFKAD 248

Query: 162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVA 208
            I + I  +      +  GL +  G   VD + F  +   GI  IGD +
Sbjct: 249 VINL-IPPQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDAS 296

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 71  AKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFP-ENHLLQ--------RLFTPSLAQRY 119
            +KVVVVGGG  G   A         ++ T+I P  ++                   +  
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61

Query: 120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 171
               + +G++ V   S   ++   D ++  VK   G+    D  V+  G + 
Sbjct: 62  YDGLRAHGIQVVH-DSATGIDP--DKKL--VKTAGGAEFGYDRCVVAPGIEL 108

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 50/288 (17%), Positives = 98/288 (34%), Gaps = 55/288 (19%)

Query: 27  YGSLIVATGCTASRF------PEKIGGYLPGVHYIRDVADADALISSLEKA------KKV 74
           Y +  +  G    +         +  G+     ++  VA +         +        V
Sbjct: 276 YKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAV 335

Query: 75  VVVGGGYIGMEVAAAAV--GWKLDTTIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFV 131
           +V+G G    + A +A+  G +    ++F      ++ F    A   E +L ++   +F+
Sbjct: 336 IVLGAGDTAFDCATSALRCGAR-RVFLVF------RKGFVNIRAVPEEVELAKEEKCEFL 388

Query: 132 KGASIKNLEAGSDGRVAAVKLE-------------DGS--TIDADTIVIGIGAKPTVSP- 175
              S + +     GR+ AV+               +     + AD ++   G+       
Sbjct: 389 PFLSPRKVI-VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKV 447

Query: 176 -FERVGLN-SSVGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTAR--VEHVDHARQS 230
                 +  +     +VD +  +T  P +FA GD+           A   VE V+  +Q+
Sbjct: 448 KEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV--------GMANTTVESVNDGKQA 499

Query: 231 AQ--HC-IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV 275
           +   H  I+A   A       LP FY+ V   + S      +F     
Sbjct: 500 SWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGLKFINPFG 547

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 61.4 bits (150), Expect = 7e-11
 Identities = 53/229 (23%), Positives = 88/229 (38%), Gaps = 50/229 (21%)

Query: 2   IYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPGVHYI 55
           +  D V  I+       + T      K  S+I+  G    +   P  ++  G   G+ Y 
Sbjct: 87  VLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGR--GISY- 143

Query: 56  RDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENHLLQR 109
              + ADA    L K + V V+GGG   +E A      +  V       +I   +     
Sbjct: 144 --CSVADA---PLFKNRVVAVIGGGDSALEGAEILSSYSTKV------YLIHRRDTF--- 189

Query: 110 LFTPSLAQRYEQLYQQ-----NGVKFVKGASIKNLEAGSDGRVAAVKLED-----GSTID 159
                   + + +Y +       V+FV  + +K  E   D  V  V +E+        ++
Sbjct: 190 --------KAQPIYVETVKKKPNVEFVLNSVVK--EIKGDKVVKQVVVENLKTGEIKELN 239

Query: 160 ADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 207
            + + I IG  P     +  G+ +   G I+VD   RT +PG+FA GD 
Sbjct: 240 VNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDC 288

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 37/185 (20%), Positives = 57/185 (30%), Gaps = 19/185 (10%)

Query: 31  IVATGCT--ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG--YIGMEV 86
           I ATG T             LP    ++ +   D     L   KKVVV      Y+G  V
Sbjct: 481 ITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVV 540

Query: 87  AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 146
           A        + +I+ P   +           R ++   +NGV  V   +   + A   G 
Sbjct: 541 AELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHA---VVAVGAGG 597

Query: 147 VAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAI 204
           V            ++ D +V+     P    +  +      G I            +  I
Sbjct: 598 VTVRDTYASIERELECDAVVMVTARLPREELYLDLVARRDAGEI----------ASVRGI 647

Query: 205 GDVAA 209
           GD  A
Sbjct: 648 GDAWA 652

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 34/228 (14%)

Query: 7   VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS-RFPEKIGGYLPGVHYI--RDVADA 61
           V  +    +   ++   G+     ++I ATG       PE  G        +     +  
Sbjct: 99  VQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP 158

Query: 62  DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-PENHLLQRLFTPSLAQRYE 120
                      +V ++GGG  G ++ A        T I       L   +    L +R  
Sbjct: 159 APF-----AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERAT 213

Query: 121 QLYQQN--------GVKFVKGASIKN--LEAGSDGRVAA-----------VKLEDGSTID 159
           + ++                   +    L+A + G +AA           ++  DG+   
Sbjct: 214 ERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERA 273

Query: 160 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD--GQFRTRMPGIFAIG 205
            D ++   G +P +S  + + L +  G ++VD  G     +P ++ +G
Sbjct: 274 FDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLG 321

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 40/248 (16%), Positives = 79/248 (31%), Gaps = 81/248 (32%)

Query: 2   IYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPGVHY- 54
                V  +  +     ++   GK  +  S+I+ATG +  R       +  G   GV   
Sbjct: 76  HEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGK--GVSTC 133

Query: 55  -------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIF 101
                   ++              K+V V+GGG   +E A         V       +I 
Sbjct: 134 ATCDGFFYKN--------------KEVAVLGGGDTAVEEAIYLANICKKV------YLI- 172

Query: 102 PENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAV 150
              H           L+                 N  ++F+    ++ ++ G    V+++
Sbjct: 173 ---HRRDGFRCAPITLEHAK-------------NNDKIEFLTPYVVEEIK-GDASGVSSL 215

Query: 151 KLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRTRMPG 200
            +++        +      I +G     +  ++   +        G I VD   +T + G
Sbjct: 216 SIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQG 275

Query: 201 IFAIGDVA 208
           +FA GD+ 
Sbjct: 276 LFAAGDIR 283

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 9e-08
 Identities = 55/328 (16%), Positives = 97/328 (29%), Gaps = 92/328 (28%)

Query: 3   YQDP--VTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA 59
            + P  +T + IE++  + N  ++  KY           SR  +           +R   
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKY---------NVSR-LQP-------YLKLRQ-- 142

Query: 60  DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI-------IF---------PE 103
              AL   L  AK V++ G    G    A  V   L   +       IF         PE
Sbjct: 143 ---AL-LELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 104 NHL--LQRL---FTPSLAQRYEQL----YQQNGVK-----FVKGASIKN----LEAGSDG 145
             L  LQ+L     P+   R +       + + ++      +K    +N    L    + 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 146 RVA-AVKLE--------DGSTIDA-----DTIVIGIGAKPTVSPFERVGLNSSVGGIQVD 191
           +   A  L              D       T +       T++P E   L       +  
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 192 G---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDY 248
               +  T  P    +  +A             +HV+  + +    I++ L+      +Y
Sbjct: 317 DLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLE-PAEY 371

Query: 249 LPYFYS-RVFEYEGS--PRKV----WWQ 269
              F    VF    +  P  +    W+ 
Sbjct: 372 RKMFDRLSVFP-PSAHIPTILLSLIWFD 398

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 45/248 (18%), Positives = 82/248 (33%), Gaps = 81/248 (32%)

Query: 2   IYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPGVHY 54
                V  I        T+    GK     ++IV TG    +  F   ++  G   GV  
Sbjct: 79  HEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGK--GVST 136

Query: 55  --------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTII 100
                    ++              K+V V+GGG   +E A       + +       +I
Sbjct: 137 CATCDGFFYKN--------------KEVAVLGGGDTALEEALYLANICSKI------YLI 176

Query: 101 FPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAA 149
               H           ++++              +N  ++ +  AS+  +  G    VA 
Sbjct: 177 ----HRRDEFRAAPSTVEKVK-------------KNEKIELITSASVDEVY-GDKMGVAG 218

Query: 150 VKL--EDGST--IDADTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRTRMPG 200
           VK+  +DGS   ++   I   +G        ++            G + VD + +T + G
Sbjct: 219 VKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAG 278

Query: 201 IFAIGDVA 208
           +FA GD+ 
Sbjct: 279 LFAAGDLR 286

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 49/246 (19%), Positives = 80/246 (32%), Gaps = 80/246 (32%)

Query: 2   IYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPGV 52
           +  D V  +  +  +      +       +  ++I+ATG    +   P  +   G   GV
Sbjct: 82  VEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGK--GV 139

Query: 53  HY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTT 98
                      +               KKVVV+GGG   +E        A  V      T
Sbjct: 140 STCATCDGFFYKG--------------KKVVVIGGGDAAVEEGMFLTKFADEV------T 179

Query: 99  IIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRV 147
           +I    H             R F              N  +KF+   +++  E      V
Sbjct: 180 VI----HRRDTLRANKVAQARAF-------------ANPKMKFIWDTAVE--EIQGADSV 220

Query: 148 AAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIF 202
           + VKL +      S +  D + I IG  P  +  +        G + V  +  T +P +F
Sbjct: 221 SGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNIPMLF 280

Query: 203 AIGDVA 208
           A GDV+
Sbjct: 281 AAGDVS 286

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 32/213 (15%)

Query: 26  KYGSLIVATGCTASRFPEKIGGYLPGVHY--------IRDVADADALISSLE----KAKK 73
           K+ +++VATG   +R  +  G  L  +           +                   K 
Sbjct: 207 KHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKH 266

Query: 74  VVVVGGGYIGMEVAAAAV--GWKLDTTI-IFPENHLLQRLFTPSLAQR--YEQLYQQNGV 128
           VVV+GGG   M+    A+  G      +      ++       + A+    E ++Q    
Sbjct: 267 VVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPE 326

Query: 129 KF--------VKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--F 176
            F        V+   I    A + GR     +E GS  T+ AD ++  +G +P   P  F
Sbjct: 327 GFTGDTVVTGVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAF 385

Query: 177 ERVGLNSSV-GGIQVD-GQFRTRMPGIFAIGDV 207
           +   L  +  G + VD     T M G+FA GD+
Sbjct: 386 DEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 47/199 (23%)

Query: 10  IDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE 69
           + ++    +T + +L  +   I+A+G      P      + G+ + + ++  D L     
Sbjct: 440 VTLKLNHTVT-ADQLQAFDETILASGIVPRTPP------IDGIDHPKVLSYLDVLRDKAP 492

Query: 70  KAKKVVVVGGGYIGMEVA---------------AAAVGWKLDTTIIFP------------ 102
              KV ++G G IG + A                    W +D+++               
Sbjct: 493 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPR 552

Query: 103 ---ENHLLQRLFT-------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 152
              +  +LQR  +        +    +       GVK + G S + ++   D  +  V  
Sbjct: 553 SPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID---DDGLHVVIN 609

Query: 153 EDGSTIDADTIVIGIGAKP 171
            +   +  D +VI  G +P
Sbjct: 610 GETQVLAVDNVVICAGQEP 628

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 24/164 (14%)

Query: 31  IVATGCTASRFPEKIGGY--LPGV-HYIRDVADA-DALISSLEKAKKVVVVGGG--YIGM 84
           I+ATG   +        +  +PG    + D       +    +  K+VV++     ++  
Sbjct: 484 IIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAP 543

Query: 85  EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS- 143
            +A        + TI+   +      FT        +L+ +  V+ +       +E G  
Sbjct: 544 SLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLH-ELHVEELGDHFCSRIEPGRM 602

Query: 144 ----------------DGRVAAVKLEDGSTIDADTIVIGIGAKP 171
                            G            I+ D++V+  G   
Sbjct: 603 EIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHS 646

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 22/213 (10%)

Query: 7   VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 64
           VT+I  +    T+ T +        + VATG               G+HY  ++ D D  
Sbjct: 111 VTNISADDAYYTIATTTETY-HADYIFVATGDYNFPKKPFK----YGIHY-SEIEDFDNF 164

Query: 65  ISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 118
                   + VV+GG   G + A       + +     TT +   +       +P   QR
Sbjct: 165 -----NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQR 219

Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFE 177
              +  + G +          +   +     +  + G ++      ++  G   T +P  
Sbjct: 220 LGNVI-KQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIV 278

Query: 178 RVGLNSSVGGIQVDGQFR-TRMPGIFAIGDVAA 209
           +    ++   I++      TR P IF IG    
Sbjct: 279 QQLFVTTNQDIKLTTHDESTRYPNIFMIGATVE 311

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 56/233 (24%)

Query: 2   IYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPGVHYI 55
           +  + V S+ +     +++T  G+  +  ++I+A G  A     P  +++ G   GV   
Sbjct: 88  LRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGR--GVSS- 144

Query: 56  RDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENH---- 105
              A  D       + + + V+GGG   ME A      A +V      T++    H    
Sbjct: 145 --CATCDGFFF---RDQDIAVIGGGDSAMEEATFLTRFARSV------TLV----HRRDE 189

Query: 106 ------LLQRLF-TPSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 157
                 +L R      +       +   +G   V G  +++   G++           +T
Sbjct: 190 FRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAE-----------TT 238

Query: 158 IDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQF-RTRMPGIFAIGDVA 208
           +    + + IG +P        + ++   G + V G+   T +PG+FA GD+ 
Sbjct: 239 LPVTGVFVAIGHEPRSGLVREAIDVDPD-GYVLVQGRTTSTSLPGVFAAGDLV 290

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 198
           L +   GRVAA    +   + A  +V  +G +    P   +  +   G I   G      
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG--VPTPGLPFDDQSGTIPNVGGRINGS 351

Query: 199 PGIFAIGDVA 208
           P  + +G + 
Sbjct: 352 PNEYVVGWIK 361

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 53/234 (22%), Positives = 85/234 (36%), Gaps = 50/234 (21%)

Query: 2   IYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP-EKIGGYLPGVHYIR 56
           I+ + VT +D   +   L T+S  +L   ++I+A G  A R  F        + G  + R
Sbjct: 87  IFTETVTKVDFSSKPFKLFTDSKAILAD-AVILAIGAVAKRLSFVGSG---EVLGGFWNR 142

Query: 57  DV---ADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENHL- 106
            +   A  D   + + + K + V+GGG   ME A       + V       II   +   
Sbjct: 143 GISACAVCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKYGSKV------YIIHRRDAFR 195

Query: 107 -----LQRLF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 156
                 QR                + Y       + G  +KN+  G             S
Sbjct: 196 ASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDV-----------S 244

Query: 157 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVD-GQFRTRMPGIFAIGDVA 208
            +    +   IG +P     +  V L+S  G +    G  +T +PG+FA GDV 
Sbjct: 245 DLKVSGLFFAIGHEPATKFLDGGVELDSD-GYVVTKPGTTQTSVPGVFAAGDVQ 297

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 59/234 (25%)

Query: 30  LIVATGCTASRFPEKIGGYLPG---VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEV 86
           L+V+ G    R P+            H+ + +        S  K  K+ ++GGG    E 
Sbjct: 184 LVVSPG-GTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEA 242

Query: 87  AAAAVGWKLDTTI--------IFP--ENHLLQRLFTPS---------------------- 114
                                + P  ++  +  +F P                       
Sbjct: 243 FIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHN 302

Query: 115 ----------LAQRYEQLYQQN-----GVKFVKGASIKNLEAGSDG---RVAAVKLEDGS 156
                     + + Y   Y+Q         F    +++   A + G    +      + S
Sbjct: 303 TNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELS 362

Query: 157 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM-----PGIFAIG 205
               D +++  G +  +       L   +G  ++   +R +        I+A G
Sbjct: 363 VETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQG 416

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 52/247 (21%), Positives = 88/247 (35%), Gaps = 77/247 (31%)

Query: 2   IYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPGVHYI 55
           I  D +  +D++ +   L  ++G+     +LI+ATG +A     P  E   G   GV   
Sbjct: 79  IIFDHINKVDLQNRPFRLNGDNGEYTC-DALIIATGASARYLGLPSEEAFKGR--GV--- 132

Query: 56  RDVADADALISS-------LEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFP 102
                     S+         + +KV V+GGG   +E A      A+ V       +I  
Sbjct: 133 ----------SACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEV------HLI-- 174

Query: 103 ENH----------LLQRLFTPSLAQRYEQLYQQNGV------KFVKGASIKNLEAGSDGR 146
             H          L++RL              +           V G  +++ +      
Sbjct: 175 --HRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNS---- 228

Query: 147 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTRMPGI 201
                 ++  ++D   + + IG  P  + FE   L    G I+V         +T +PG+
Sbjct: 229 ------DNIESLDVAGLFVAIGHSPNTAIFEGQ-LELENGYIKVQSGIHGNATQTSIPGV 281

Query: 202 FAIGDVA 208
           FA GDV 
Sbjct: 282 FAAGDVM 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.97
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.97
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.97
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.96
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.96
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.96
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.96
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.96
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.96
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.96
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.96
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.96
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.96
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.96
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.96
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.95
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.95
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.95
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.95
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.95
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.95
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.95
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.94
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.94
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.94
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.93
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.93
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.92
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.92
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.92
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.92
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.92
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.9
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.9
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.89
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.89
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.88
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.85
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.84
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.76
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.76
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.75
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.7
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.54
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.34
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.16
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.08
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.93
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.92
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.84
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.83
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.81
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.8
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.8
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.8
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.79
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.78
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.78
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.76
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.75
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.75
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.75
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.74
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.73
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.73
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.71
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.71
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.7
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.69
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.69
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.67
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.67
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.66
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.65
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.65
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.64
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.64
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.64
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.63
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.62
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.62
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.59
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.59
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.59
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.58
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.56
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.56
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.55
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.53
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.53
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.52
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.52
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.51
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.51
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.5
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.49
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.49
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.49
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.48
3dme_A	369	Conserved exported protein; structural genomics, P	98.47
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.47
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.47
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.46
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.46
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.43
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.42
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.41
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.41
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.39
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.38
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.36
3atr_A	453	Conserved archaeal protein; saturating double bond	98.36
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.36
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.35
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.35
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.34
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.34
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.34
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.32
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.32
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.3
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.3
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.29
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.29
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.29
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.28
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.28
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.27
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.26
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.26
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.26
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.26
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.25
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.25
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.21
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.21
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.21
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.2
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.2
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.2
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.2
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.2
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.18
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.18
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.17
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.16
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.16
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.16
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.16
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.16
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.16
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.15
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.15
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.15
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.15
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.15
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.13
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.12
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.11
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.1
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.1
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.09
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.09
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.09
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.09
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.09
4dna_A	463	Probable glutathione reductase; structural genomic	98.08
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.07
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.07
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.07
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.05
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.05
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.05
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.03
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.03
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.03
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.02
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.02
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.01
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.0
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.0
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.0
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.99
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.99
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.99
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.98
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.96
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.91
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.87
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.86
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.84
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.84
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.83
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.8
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.78
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.74
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.74
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.72
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.72
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.71
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.6
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.58
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.56
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.56
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.52
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.47
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.46
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.45
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.4
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.35
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.33
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.33
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.19
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.15
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.13
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.0
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.95
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.87
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.79
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.74
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.69
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.44
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	95.82
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.82
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.81
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.76
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	95.74
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	95.74
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	95.73
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	95.59
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.57
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	95.54
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	95.54
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	95.5
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	95.49
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	95.43
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	95.41
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	95.4
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.24
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.22
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	95.13
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.09
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	95.08
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	95.05
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	94.93
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	94.87
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.84
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	94.83
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	94.81
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	94.8
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	94.7
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	94.66
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.49
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	94.48
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.43
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.43
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	94.24
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	94.15
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.15
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.07
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	94.06
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.77
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	93.73
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.7
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	93.55
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.55
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	93.41
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.31
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	93.21
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	93.01
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	92.98
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	92.96
4ezb_A	317	Uncharacterized conserved protein; structural geno	92.73
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.59
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	92.4
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	91.98
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	91.93
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	91.87
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.7
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	91.28
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	91.23
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	91.22
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	90.9
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	90.71
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	90.7
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	90.67
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	90.51
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.41
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.31
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.21
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	90.14
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	89.82
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	89.72
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	89.61
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	89.58
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	89.55
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	89.55
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	89.35
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.3
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	89.26
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	89.06
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	89.05
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	89.03
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	89.02
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	89.01
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	88.97
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	88.72
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	88.7
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	88.61
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	88.37
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	88.2
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	88.19
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	88.17
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	88.14
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	88.12
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	88.02
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	87.98
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	87.91
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	87.84
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	87.84
4g65_A	461	TRK system potassium uptake protein TRKA; structur	87.78
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	87.69
2cul_A	232	Glucose-inhibited division protein A-related PROT	87.67
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	87.63
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	87.49
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	87.49
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	87.48
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	87.42
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	87.39
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	87.33
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	87.17
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	87.07
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	86.97
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	86.97
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	86.88
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	86.87
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	86.87
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	86.85
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	86.82
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	86.82
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	86.76
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	86.44
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	86.38
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	86.37
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	86.35
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	86.33
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	86.31
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	86.27
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	86.25
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	86.21
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	86.14
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	86.01
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	86.0
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	86.0
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	85.96
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	85.92
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	85.76
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	85.73
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	85.68
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	85.65
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	85.63
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	85.58
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	85.58
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	85.57
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	85.55
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	85.54
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	85.5
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	85.4
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	85.37
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	85.33
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	85.27
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	85.23
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	85.09
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	85.08
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	85.06
3qha_A	296	Putative oxidoreductase; seattle structural genomi	85.03
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	85.03
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	85.02
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	85.01
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	85.01
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	84.97
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	84.96
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	84.96
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	84.94
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	84.92
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	84.89
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	84.85
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	84.81
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	84.73
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	84.72
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	84.66
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	84.65
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	84.63
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	84.58
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	84.55
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	84.49
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	84.37
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	84.3
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	84.23
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	84.13
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	84.12
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	84.09
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	84.04
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	84.01
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	83.94
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	83.92
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	83.9
3l07_A	285	Bifunctional protein fold; structural genomics, ID	83.88
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	83.87
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	83.86
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	83.82
4g65_A	461	TRK system potassium uptake protein TRKA; structur	83.82
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	83.75
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	83.71
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	83.67
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	83.67
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	83.65
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	83.62
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	83.58
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	83.5
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	83.44
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	83.44
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	83.37
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	83.26
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	83.24
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	83.18
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	83.15
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	83.06
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	83.06
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	83.02
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	82.92
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	82.88
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	82.84
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	82.83
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	82.79
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	82.72
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	82.69
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	82.58
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	82.57
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	82.56
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.48
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	82.44
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	82.4
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	82.38
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	82.34
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	82.33
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	82.31
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	82.27
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	82.16

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=4.9e-50  Score=382.82  Aligned_cols=321  Identities=29%  Similarity=0.482  Sum_probs=290.0

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcC-CCeEEEECCC
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGG   80 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-~~~vvVvGgG   80 (352)
                      +++++|+.||++.+.|.+++|+.+.||+||||||++|+. |+++|.+.++++++++..++..+...+.. +++++|||+|
T Consensus        83 ~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~-~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG  161 (415)
T 3lxd_A           83 KLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRR-LSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGG  161 (415)
T ss_dssp             EETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCC-CBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             EeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCC-CCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCC
Confidence            456799999999999999999999999999999999864 56778778899999999999988887777 9999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEc
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  160 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~  160 (352)
                      ++|+|+|..|++.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.+++++.. ++.+..|.+++|++++|
T Consensus       162 ~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~l~dG~~i~a  240 (415)
T 3lxd_A          162 YIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQDGSVIPA  240 (415)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEEESSSCEEEC
T ss_pred             HHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEEeCCCCEEEc
Confidence            99999999999999999999999999988899999999999999999999999999999853 56777899999999999


Q ss_pred             CEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccC-CcccccccHHHHHHHHHHHHHHHh
Q 018652          161 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY-DRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       161 D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~-~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      |.||+|+|.+|++++++.+++..+ ++|.||++++|+.|+|||+|||+..+.+.. |...+.++|.+|..||+.+|+||+
T Consensus       241 D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  319 (415)
T 3lxd_A          241 DIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDIC  319 (415)
T ss_dssp             SEEEECSCCEESCHHHHHTTCCCS-SSEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHT
T ss_pred             CEEEECCCCccChHHHHhCCCCcC-CCEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhc
Confidence            999999999999999999999887 459999999999999999999999887666 778889999999999999999999


Q ss_pred             cCCCCCCCCCCeeeeeccCcCCCCcceeeEEeecCcc--cEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHH
Q 018652          240 SAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPT  316 (352)
Q Consensus       240 ~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~  316 (352)
                      +. ..+|..+||||+++|+..       +++.|...+  +.+.+++.+ .+|.+||+++|+|+|+++ .|++++...+++
T Consensus       320 g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~  390 (415)
T 3lxd_A          320 GA-PVPYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDC-VNMVKDYVQGKK  390 (415)
T ss_dssp             TC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEE-ESCHHHHHHHHH
T ss_pred             CC-CCCCCCCCeeEeeeCCcE-------EEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEE-ECChHHHHHHHH
Confidence            64 568999999999999864       899997653  566677664 789999999999999997 899999999999


Q ss_pred             HHhCCCCCChhhhcCCCc
Q 018652          317 LARSQPFVDKAKLQQASS  334 (352)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~  334 (352)
                      +|+++..+++.+|.++..
T Consensus       391 ~~~~~~~~~~~~l~~~~~  408 (415)
T 3lxd_A          391 LVEARAQIAPEQLADAGV  408 (415)
T ss_dssp             HHHHTCCCCHHHHTCTTS
T ss_pred             HHHCCCCCCHHHhcCCCC
Confidence            999999999988877765

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=8.8e-50  Score=379.75  Aligned_cols=319  Identities=29%  Similarity=0.453  Sum_probs=289.4

Q ss_pred             CceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHH
Q 018652            5 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGM   84 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~   84 (352)
                      ++|+.||++.+.|++++|+.+.||+||+|||++|+. |+++|.+.++++++++..++..+...+..+++++|||+|++|+
T Consensus        77 ~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~-~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~  155 (404)
T 3fg2_P           77 DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRM-LDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGL  155 (404)
T ss_dssp             CCEEEEETTTTEEEESSSCEEECSEEEECCCEEECC-CCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHH
T ss_pred             EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccC-CCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHH
Confidence            789999999999999999999999999999999864 5577877889999999999999888888899999999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652           85 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  164 (352)
Q Consensus        85 e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  164 (352)
                      |+|..|++.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.|++++.. ++.+..|.+++|++++||.||
T Consensus       156 e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~dG~~i~aD~Vv  234 (404)
T 3fg2_P          156 EFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSDGNTLPCDLVV  234 (404)
T ss_dssp             HHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSEEE
T ss_pred             HHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCCCCEEEcCEEE
Confidence            9999999999999999999999988899999999999999999999999999999854 466778999999999999999


Q ss_pred             EccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC
Q 018652          165 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH  244 (352)
Q Consensus       165 ~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~  244 (352)
                      +|+|.+|++++++.+++..++ +|.||++++|+.|+|||+|||+..+.+..|...+.++|.+|..||+.+|++|++. ..
T Consensus       235 ~a~G~~p~~~l~~~~gl~~~~-Gi~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~-~~  312 (404)
T 3fg2_P          235 VGVGVIPNVEIAAAAGLPTAA-GIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGD-AK  312 (404)
T ss_dssp             ECCCEEECCHHHHHTTCCBSS-SEEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTC-CC
T ss_pred             ECcCCccCHHHHHhCCCCCCC-CEEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCC-CC
Confidence            999999999999999999884 5999999999999999999999988777788888999999999999999999964 56


Q ss_pred             CCCCCCeeeeeccCcCCCCcceeeEEeecCcc--cEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHhCC
Q 018652          245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQ  321 (352)
Q Consensus       245 ~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~  321 (352)
                      +|..+||||+++|+..       +++.|....  +.+.+++.+ .+|.+||+++|+++|+++ .|++++...++++|+++
T Consensus       313 ~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~  384 (404)
T 3fg2_P          313 PYDGYPWFWSDQGDDK-------LQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIES-VNRAADHVFGRKILPLD  384 (404)
T ss_dssp             CCCCCCEEEEEETTEE-------EEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHTTTT
T ss_pred             CCCCCCceEeEECCcE-------EEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEE-eCCHHHHHHHHHHHHcC
Confidence            8999999999999854       899997643  566677764 689999999999999997 89999999999999999


Q ss_pred             CCCChhhhcCCCch
Q 018652          322 PFVDKAKLQQASSV  335 (352)
Q Consensus       322 ~~~~~~~~~~~~~~  335 (352)
                      ..+++.+|.++..-
T Consensus       385 ~~~~~~~l~~~~~~  398 (404)
T 3fg2_P          385 KSVTPEQAADLSFD  398 (404)
T ss_dssp             CCCCHHHHHCTTSC
T ss_pred             CCCCHHHhcCCCCC
Confidence            99999888877653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=8.9e-50  Score=380.37  Aligned_cols=319  Identities=27%  Similarity=0.426  Sum_probs=286.9

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +++++|+.||++.+.|.+++|+++.||+||||||++|+. |++||.+.++++++++..++..+...+..+++++|||+|+
T Consensus        75 ~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~-~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~  153 (410)
T 3ef6_A           75 LTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRART-MALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGL  153 (410)
T ss_dssp             EESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSH
T ss_pred             EeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccC-CCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCH
Confidence            456799999999999999999999999999999999874 5678877889999999999999888888899999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      +|+|+|..|++.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.+++++.+  +.+..+.+++|++++||
T Consensus       154 ~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~v~~~dg~~i~aD  231 (410)
T 3ef6_A          154 IGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASDGRSFVAD  231 (410)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECS--SSCCEEEETTSCEEECS
T ss_pred             HHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEecc--CcEEEEEECCCCEEEcC
Confidence            9999999999999999999999999887789999999999999999999999999999853  34557889999999999


Q ss_pred             EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      .||+|+|.+|+++++++++++.+ ++|.||++++|+.|+|||+|||+..+.+. |...+.++|..|..||+.+|++|++.
T Consensus       232 ~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~aa~~i~g~  309 (410)
T 3ef6_A          232 SALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAAVAAAILGK  309 (410)
T ss_dssp             EEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999988 56999999999999999999999987665 66777889999999999999999964


Q ss_pred             CCCCCCCCCeeeeeccCcCCCCcceeeEEeecCcc--cEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHH
Q 018652          242 QTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLA  318 (352)
Q Consensus       242 ~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~  318 (352)
                       ..+|..+||||+++|++.       +++.|....  +.+.+++.+ ..|.+||+++|+|+|+++ .|++.+...++++|
T Consensus       310 -~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~i  380 (410)
T 3ef6_A          310 -NVSAPQLPVSWTEIAGHR-------MQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVA-VDAPRDFALATRLV  380 (410)
T ss_dssp             -CCCCCBCCEEEEEETTEE-------EEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEE-ESCHHHHHHHHHHH
T ss_pred             -CCCCCCCCeeEEEECCce-------EEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEE-ECChHHHHHHHHHH
Confidence             568999999999999864       888997653  567777765 679999999999999997 89999999999999


Q ss_pred             hCCCCCChhhhcCCCc
Q 018652          319 RSQPFVDKAKLQQASS  334 (352)
Q Consensus       319 ~~~~~~~~~~~~~~~~  334 (352)
                      +++..+++.+|.++..
T Consensus       381 ~~~~~~~~~~l~~~~~  396 (410)
T 3ef6_A          381 EARAAIEPARLADLSN  396 (410)
T ss_dssp             HHTCBCCHHHHHCTTS
T ss_pred             hCCCCCCHHHhcCCCC
Confidence            9999999988877765

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=1.2e-46  Score=358.43  Aligned_cols=320  Identities=26%  Similarity=0.392  Sum_probs=276.9

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCC-CCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG   80 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG   80 (352)
                      +++++|+.||++.++|++++|+.+.||+||||||++|+. |++ +|.+ ++++++++.+++..+.+.+..+++++|||+|
T Consensus        77 ~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~-~~i~~G~~-~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG  154 (408)
T 2gqw_A           77 LLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA-LPTLQGAT-MPVHTLRTLEDARRIQAGLRPQSRLLIVGGG  154 (408)
T ss_dssp             EETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CGGGTTCS-SCEEECCSHHHHHHHHTTCCTTCEEEEECCS
T ss_pred             EcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCC-CCccCCCC-CcEEEECCHHHHHHHHHHhhcCCeEEEECCC
Confidence            456789999999999999999899999999999999864 556 7766 7899999999998888777779999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEc
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA  160 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~  160 (352)
                      ++|+|+|..|++.|.+||++++.++++++.+++++.+.+.+.+++.||++++++.+++++ +  +   .|.+.+|++++|
T Consensus       155 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~---~v~~~~g~~i~~  228 (408)
T 2gqw_A          155 VIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D--G---VVLLDDGTRIAA  228 (408)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T---EEEETTSCEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C---EEEECCCCEEEc
Confidence            999999999999999999999999999877899999999999999999999999999998 3  2   567889999999


Q ss_pred             CEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          161 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       161 D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      |.||+|+|.+|+++++++++++.++ +|.||+++||+.|+|||+|||+..+.+..|...+.++|..|..||+.+|+||++
T Consensus       229 D~vi~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  307 (408)
T 2gqw_A          229 DMVVVGIGVLANDALARAAGLACDD-GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD  307 (408)
T ss_dssp             SEEEECSCEEECCHHHHHHTCCBSS-SEECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECcCCCccHHHHHhCCCCCCC-CEEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998874 599999999999999999999998766566666677999999999999999996


Q ss_pred             CCCCCCCCCCeeeeeccCcCCCCcceeeEEeec-CcccEEEEcCCC---CcEEEEEEECCEEEEEEeecCCHHHhhHHHH
Q 018652          241 AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD-NVGETIEIGNFD---PKIATFWIDSGKLKGVLVESGSPEEFQLLPT  316 (352)
Q Consensus       241 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~-~~~~~~~~~~~~---~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~  316 (352)
                      ....+|..+||+|+++|+..       ++++|. ...+.+..++.+   ..|.++|.++++|+|+++ .+...+...++.
T Consensus       308 ~~~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g~~~~~~~~~~  379 (408)
T 2gqw_A          308 PTAPGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNARDFAPLRR  379 (408)
T ss_dssp             TTSCCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEE-ESCHHHHHHHHH
T ss_pred             CCCCcCCCCCeEEEEECCce-------EEEECCCCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEE-ECChHHHHHHHH
Confidence            43227888999999999753       778886 223455566643   568899999999999997 677788889999


Q ss_pred             HHhCCCCCChhhhcCCCchHHH
Q 018652          317 LARSQPFVDKAKLQQASSVEEA  338 (352)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~e~  338 (352)
                      +|+++.+++..++.++......
T Consensus       380 ~i~~~~~~~~~~l~~~~~~~~~  401 (408)
T 2gqw_A          380 LLAVGAKPDRAALADPATDLRK  401 (408)
T ss_dssp             HHHTTCCCCHHHHHCTTCCHHH
T ss_pred             HHHCCCCCChHHhcCCCCCHHH
Confidence            9999999999888777654333

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=2.5e-46  Score=358.72  Aligned_cols=323  Identities=28%  Similarity=0.485  Sum_probs=281.3

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCc---EEEecCHHHHHHHHHhhcCCCeEEEEC
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---VHYIRDVADADALISSLEKAKKVVVVG   78 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~---v~~~~~~~~~~~~~~~~~~~~~vvVvG   78 (352)
                      +++++|+.|+++++.|.+++|+.+.||+||+|||++|+. |+++|.+.++   ++++++.+++..+.+.+..+++++|||
T Consensus        78 ~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~-~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViG  156 (431)
T 1q1r_A           78 LGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRP-LPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIG  156 (431)
T ss_dssp             ECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEEC
T ss_pred             EeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccC-CCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEEC
Confidence            457889999999999999999899999999999999864 5567765556   999999999988888777899999999


Q ss_pred             CChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec-CCCcEEEEEcCCCCE
Q 018652           79 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKLEDGST  157 (352)
Q Consensus        79 gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~-~~~~~~~v~~~~g~~  157 (352)
                      +|++|+|+|..|++.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.+++++.. +++.+..+.+.+|++
T Consensus       157 gG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~  236 (431)
T 1q1r_A          157 GGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTR  236 (431)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCE
T ss_pred             CCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCE
Confidence            9999999999999999999999999999887789999999999999999999999999999852 345666788899999


Q ss_pred             EEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652          158 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  237 (352)
Q Consensus       158 i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~  237 (352)
                      +++|.||+|+|.+|+++++++++++.+ ++|.||++++|+.|+|||+|||+..+.+..|...+.++|..|..||+.+|+|
T Consensus       237 i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~  315 (431)
T 1q1r_A          237 LPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI  315 (431)
T ss_dssp             EECSEEEECCCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHH
T ss_pred             EEcCEEEECCCCCcCcchhhccCCCCC-CCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887 4599999999999999999999998776667777788999999999999999


Q ss_pred             HhcCCCCCCCCCCeeeeeccCcCCCCcceeeEEeecCcc--cEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHH
Q 018652          238 LLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLL  314 (352)
Q Consensus       238 i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~  314 (352)
                      |++. ..+|..+||+|+++|++.       +++.|....  +.+..++.+ ..|.++|.++++|+|+++ .+.......+
T Consensus       316 i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g~~~~~~~~  386 (431)
T 1q1r_A          316 LCGK-VPRDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VNRPVEFNQS  386 (431)
T ss_dssp             HTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHHHHH
T ss_pred             hcCC-CCCCCCCCeEEEEECCce-------EEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEE-ECChHHHHHH
Confidence            9964 457888999999998753       777886543  455566554 568888989999999997 7888888889


Q ss_pred             HHHHhCCCCCChhhhcCCCch
Q 018652          315 PTLARSQPFVDKAKLQQASSV  335 (352)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~  335 (352)
                      +.++..+..++..+|.++...
T Consensus       387 ~~~i~~~~~~~~~~l~~~~~~  407 (431)
T 1q1r_A          387 KQIITDRLPVEPNLLGDESVP  407 (431)
T ss_dssp             HHHHHTTCCCCHHHHTCTTSC
T ss_pred             HHHHHCCCCCCHHHhhCCCCC
Confidence            999999999999888776653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=5.4e-47  Score=357.76  Aligned_cols=300  Identities=21%  Similarity=0.264  Sum_probs=260.6

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +++++|++||+++++|++++|+++.||+||||||++|+. |+++|.+  +++++++.+++..+.+.+..+++++|||+|+
T Consensus        80 ~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~-p~i~G~~--~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~  156 (385)
T 3klj_A           80 ITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANK-IKVPHAD--EIFSLYSYDDALKIKDECKNKGKAFIIGGGI  156 (385)
T ss_dssp             ECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CCCTTCS--CEECCSSHHHHHHHHHHHHHHSCEEEECCSH
T ss_pred             EeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCC-CCCCCCC--CeEEeCCHHHHHHHHHHhhcCCeEEEECCCH
Confidence            567899999999999999999999999999999999874 5577755  8999999999999888777889999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      +|+|+|..|++.|.+||++++.++++++.+++.+.+.+.+.+++.||++++++.++++               |+++++|
T Consensus       157 ~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i---------------g~~~~~D  221 (385)
T 3klj_A          157 LGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRSS  221 (385)
T ss_dssp             HHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC---------------HHHHHHS
T ss_pred             HHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc---------------CeEEecC
Confidence            9999999999999999999999999998899999999999999999999999877655               5578999


Q ss_pred             EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      .||+++|.+|++++++++++..++ +|.||++++|+.|+|||+|||+..+...      ..+|..|..||+.+|++|++.
T Consensus       222 ~vv~a~G~~p~~~~~~~~gl~~~~-gi~vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~aa~~i~g~  294 (385)
T 3klj_A          222 CVITAVGVKPNLDFIKDTEIASKR-GILVNDHMETSIKDIYACGDVAEFYGKN------PGLINIANKQGEVAGLNACGE  294 (385)
T ss_dssp             EEEECCCEEECCGGGTTSCCCBSS-SEEECTTCBCSSTTEEECGGGEEETTBC------CCCHHHHHHHHHHHHHHHTTC
T ss_pred             eEEECcCcccChhhhhhcCCCcCC-CEEECCCcccCCCCEEEEEeeEecCCCc------ccHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999998874 5999999999999999999999876432      237889999999999999964


Q ss_pred             CCCCCCC-CCeeeeeccCcCCCCcceeeEEeecCcc---cEEEEcCCCCcEEEEEEECCEEEEEEeecCCHHHhhHHHHH
Q 018652          242 QTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTL  317 (352)
Q Consensus       242 ~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~  317 (352)
                       ..+|.. +|++|+++|+..       ++++|....   +.+.+...+..|.++|+++|+|+|+++ .|++.....++.+
T Consensus       295 -~~~~~~~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~g~~~~~~~~~~~  365 (385)
T 3klj_A          295 -DASYSEIIPSPILKVSGIS-------IISCGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAV-IGDVSLGTKLKKA  365 (385)
T ss_dssp             -CCCCCCCCCCCEEEETTEE-------EEEESCCTTCCCSEEEEEECSSCEEEEEEETTEEEEEEE-ESCHHHHHHHHHH
T ss_pred             -CcCCCCCCCcEEEEeCCCc-------EEEEcCCCCCCCeEEEEECCCCeEEEEEEECCEEEEEEE-ECCcHHHHHHHHH
Confidence             456766 699999999754       788887653   334442224679999999999999997 7888888899999


Q ss_pred             HhCCCCCChhhhcCCCchHHHHH
Q 018652          318 ARSQPFVDKAKLQQASSVEEALE  340 (352)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~e~~~  340 (352)
                      |+++.++++.     ++++|.++
T Consensus       366 i~~~~~~~~~-----~~~~E~~~  383 (385)
T 3klj_A          366 IDSSKSFDNI-----SSLDAILN  383 (385)
T ss_dssp             HHTTCBCSCC-----SCHHHHHT
T ss_pred             HHcCCCcccc-----cCHHHHHh
Confidence            9999877655     89999875

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=1.9e-44  Score=351.15  Aligned_cols=318  Identities=21%  Similarity=0.334  Sum_probs=256.7

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC----CCcEEEecCHHHHHHHHHhhcCCCeEEEE
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRDVADADALISSLEKAKKVVVV   77 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~----~~~v~~~~~~~~~~~~~~~~~~~~~vvVv   77 (352)
                      +++++|++||++.++|++++|+++.||+||||||++|+.+| .++..    .++++++++..++..+...+..+++++||
T Consensus       108 ~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~-~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvVi  186 (493)
T 1m6i_A          108 LTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLS-AIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITII  186 (493)
T ss_dssp             EETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCH-HHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEE
T ss_pred             EcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC-CcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEE
Confidence            45679999999999999999999999999999999987543 33321    35788999999998888877789999999


Q ss_pred             CCChHHHHHHHHHHh----CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC
Q 018652           78 GGGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  153 (352)
Q Consensus        78 GgG~~g~e~A~~l~~----~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~  153 (352)
                      |+|++|+|+|..|++    .|.+|+++++.+.++.+.+++.+.+.+.+.++++||++++++.|++++.. ++.+ .+.+.
T Consensus       187 GgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~  264 (493)
T 1m6i_A          187 GGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLK  264 (493)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEET
T ss_pred             CCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCeE-EEEEC
Confidence            999999999999987    57899999998888877889999999999999999999999999999753 3333 67889


Q ss_pred             CCCEEEcCEEEEccCCCCCchhhhhcCCccc--CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHH
Q 018652          154 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA  231 (352)
Q Consensus       154 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g  231 (352)
                      +|++++||.||+++|.+||+++++.++++.+  +|+|.||++||| .|+|||+|||+..+.+..|.. ++++|++|..||
T Consensus       265 dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~-~~~~~~~A~~qg  342 (493)
T 1m6i_A          265 DGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSG  342 (493)
T ss_dssp             TSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEEEEETTTEEE-CCCCHHHHHHHH
T ss_pred             CCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEeccCcccCcc-ccchHHHHHHHH
Confidence            9999999999999999999999999998876  479999999998 699999999999776555543 577999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCeeeeeccCcCCCCc----ceeeEEeecCcc-----c------------------------E
Q 018652          232 QHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFGDNVG-----E------------------------T  278 (352)
Q Consensus       232 ~~aa~~i~~~~~~~~~~~p~~~~~~~~~~g~~~----~~~~~~~G~~~~-----~------------------------~  278 (352)
                      +.+|+||++ ...+|.+.||||++++...+...    ...++++|....     .                        .
T Consensus       343 ~~aa~ni~g-~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (493)
T 1m6i_A          343 RLAGENMTG-AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEI  421 (493)
T ss_dssp             HHHHHHHTS-CCCCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHHHHHHHHSCSCHHHHSCSCCCC--
T ss_pred             HHHHHHhcC-CCCCcCCcCceeeeeccCcceEEEeccCCCcceEEeeccccccccccccccccccccccccccccccccc
Confidence            999999995 56789999999999983211000    001233332100     0                        0


Q ss_pred             EEE----c-------C-CCCcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHhCCCCCCh
Q 018652          279 IEI----G-------N-FDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK  326 (352)
Q Consensus       279 ~~~----~-------~-~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (352)
                      ...    |       + ...+|.+||+++|+|+|+++ +|.++.+..++++|+.+..+++
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~li~~~~~~~~  480 (493)
T 1m6i_A          422 TIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHED  480 (493)
T ss_dssp             ------------------CCEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCSC
T ss_pred             ccccccccccccccccccCCcEEEEEEeCCEEEEEEE-ecCcchHHHHHHHHhCCCCCCC
Confidence            000    0       1 12567889999999999997 8999999999999988887766

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=2.5e-42  Score=333.02  Aligned_cols=330  Identities=21%  Similarity=0.276  Sum_probs=263.5

Q ss_pred             ccCCceEEEECCCcEEEeCC-----CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652            2 IYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV   76 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~-----g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvV   76 (352)
                      +++++|+.++++++.|.+.+     +..+.||+||||||++|+ .|+++|.+.+++++++++.+...+.+....+++++|
T Consensus        76 ~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvV  154 (452)
T 2cdu_A           76 QMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPT-VPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITI  154 (452)
T ss_dssp             EESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEE
T ss_pred             EeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcC-CCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEE
Confidence            45778999998888888754     467999999999999986 456777767789999999999888888888999999


Q ss_pred             ECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC
Q 018652           77 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS  156 (352)
Q Consensus        77 vGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~  156 (352)
                      ||+|++|+|+|..|+++|.+|+++++.++++++.+++++.+.+.+.+++.||++++++++++++.. ++.+..+.+ +|+
T Consensus       155 iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~~v~~-~g~  232 (452)
T 2cdu_A          155 IGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEIITKTL-DGK  232 (452)
T ss_dssp             ECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEEEEET-TSC
T ss_pred             ECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEEEEEe-CCC
Confidence            999999999999999999999999999999987799999999999999999999999999999853 455545665 778


Q ss_pred             EEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHH
Q 018652          157 TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI  235 (352)
Q Consensus       157 ~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa  235 (352)
                      ++++|.||+|+|++|++++++.. ++.+ +|+|.||+++||+.|+|||+|||+..+....+...+.+++..|..||+.+|
T Consensus       233 ~i~~D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa  311 (452)
T 2cdu_A          233 EIKSDIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVG  311 (452)
T ss_dssp             EEEESEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHH
T ss_pred             EEECCEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHH
Confidence            89999999999999999988877 7764 677999999999999999999999876555555545668899999999999


Q ss_pred             HHHhcCCCCCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------EEE-----EcC------CCCcEEEEEEE--C
Q 018652          236 KALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-----IGN------FDPKIATFWID--S  295 (352)
Q Consensus       236 ~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-----~~~------~~~~~~~~~~~--~  295 (352)
                      +||++.........|++|+.+|+..       +..+|....+       ...     ...      ....+.+++++  +
T Consensus       312 ~~i~g~~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  384 (452)
T 2cdu_A          312 LNLTEDKVKDMGTQSSSGLKLYGRT-------YVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSLVYDPKT  384 (452)
T ss_dssp             HTSSSCCCCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEEEECTTT
T ss_pred             HHhCCCCCcCCCccceEEEEECCee-------eEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEEEEECCC
Confidence            9999643222334678888888642       6667754321       111     010      11235566664  5


Q ss_pred             CEEEEEEeecC-CHHHhh-HHHHHHhCCCCCChhh---hcCCCchHHHHHHH
Q 018652          296 GKLKGVLVESG-SPEEFQ-LLPTLARSQPFVDKAK---LQQASSVEEALEIA  342 (352)
Q Consensus       296 ~~v~g~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~  342 (352)
                      ++|+|+++++. ++.++. .+..+|+.+.++++..   +..||+++|++...
T Consensus       385 ~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~  436 (452)
T 2cdu_A          385 RVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFNYL  436 (452)
T ss_dssp             CBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSSCHH
T ss_pred             CEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchHHHH
Confidence            89999999776 566664 5567788999888833   57799998875443

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=100.00  E-value=5.3e-42  Score=333.86  Aligned_cols=331  Identities=19%  Similarity=0.294  Sum_probs=262.6

Q ss_pred             ccCCceEEEECCCcEEEeC-CC--eEEecCeEEEccCCCCCCCCCCCCCC-----------CCcEEEecCHHHHHHHHHh
Q 018652            2 IYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTASRFPEKIGGY-----------LPGVHYIRDVADADALISS   67 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~-~g--~~~~yd~lViAtG~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~~~~~~   67 (352)
                      +++++|+.|+++++.|.+. ++  .++.||+||||||++|+ .|+++|.+           .+++++++++.+...+.+.
T Consensus       110 ~~~~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~~~~~f~~~~~~v~~~~~~~~~~~~~~~  188 (490)
T 2bc0_A          110 YMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPI-LPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAK  188 (490)
T ss_dssp             ETTCCEEEEETTTTEEEEEETTEEEEEECSEEEECCCEEEC-CCSCBTCCBCTTCTTCCBSSTTEEECSSHHHHHHHHHH
T ss_pred             EeCCEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCCCcC-CCCCCCccccccccccccccCCEEEeCCHHHHHHHHHH
Confidence            4678899999999988886 54  47999999999999986 46677766           6789999999999888887


Q ss_pred             h--cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC
Q 018652           68 L--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  145 (352)
Q Consensus        68 ~--~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~  145 (352)
                      .  ..+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++.+.+.+.+++.||++++++.+++++.  ++
T Consensus       189 ~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~  266 (490)
T 2bc0_A          189 LENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAG--NG  266 (490)
T ss_dssp             TTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEEC--SS
T ss_pred             hhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEc--CC
Confidence            7  6789999999999999999999999999999999999998678999999999999999999999999999985  33


Q ss_pred             cEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccH
Q 018652          146 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  224 (352)
Q Consensus       146 ~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~  224 (352)
                      .+..+.+ +|+++++|.||+|+|++|+++++++. ++.+ +|+|.||+++||+.|+|||+|||+..+....+...+.+++
T Consensus       267 ~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ll~~~-l~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~  344 (490)
T 2bc0_A          267 KVEKIIT-DKNEYDVDMVILAVGFRPNTTLGNGK-IDLFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALA  344 (490)
T ss_dssp             SCCEEEE-SSCEEECSEEEECCCEEECCGGGTTC-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEETTTTEEECCCCH
T ss_pred             cEEEEEE-CCcEEECCEEEECCCCCcChHHHHhh-hccCCCCCEEECCCcccCCCCEEEeeeeEEeccccCCceeecccH
Confidence            3334555 67889999999999999999988777 7764 6779999999999999999999998765555554455688


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-------EcCC----C-
Q 018652          225 DHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------IGNF----D-  285 (352)
Q Consensus       225 ~~A~~~g~~aa~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------~~~~----~-  285 (352)
                      ..|..||+.+|+||++.........|++|+.+|+..       +..+|....       +...       ....    + 
T Consensus       345 ~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~  417 (490)
T 2bc0_A          345 SNAVRTGIVAAHNACGTDLEGIGVQGSNGISIYGLH-------MVSTGLTLEKAKRLGFDAAVTEYTDNQKPEFIEHGNF  417 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTCCSSCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCcE-------eEEeeCCHHHHHHcCCceEEEEEecCCcccccCCCCc
Confidence            899999999999999643222334678888888642       666775432       1111       1111    1 


Q ss_pred             CcEEEEEEE--CCEEEEEEeecC-CHHHhh-HHHHHHhCCCCCChhh---hcCCCchHHHHHHHHh
Q 018652          286 PKIATFWID--SGKLKGVLVESG-SPEEFQ-LLPTLARSQPFVDKAK---LQQASSVEEALEIARA  344 (352)
Q Consensus       286 ~~~~~~~~~--~~~v~g~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~~~  344 (352)
                      ..+.+++++  +++|+|+++++. ++.++. .+..+|+.+.++++..   +..||+++|++..+..
T Consensus       418 ~~~~kl~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~~  483 (490)
T 2bc0_A          418 PVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLAIQEGVTIEKLALTDIFFLPHFNKPYNYITM  483 (490)
T ss_dssp             EEEEEEEEETTTCBEEEEEEEESSCCTTHHHHHHHHHHHTCBHHHHHHSCCCCCTTTCCTTCHHHH
T ss_pred             eEEEEEEEECCCCEEEEEEEEcCcCHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCchhHHHHH
Confidence            235566654  589999999776 566554 5667789999988832   5789999987655443

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=3.3e-41  Score=323.48  Aligned_cols=319  Identities=21%  Similarity=0.299  Sum_probs=248.7

Q ss_pred             ccCCceEEEECCCcEEEeCC-----CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhh--cCCCeE
Q 018652            2 IYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~-----g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--~~~~~v   74 (352)
                      +++++|++||++.+.+.+.+     +.++.||+||||||++|+. |.++   .++++++++..++..+.+.+  ..++++
T Consensus        75 ~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~-p~i~---g~~~~~~~~~~~~~~l~~~~~~~~~~~v  150 (437)
T 4eqs_A           75 KTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANS-LGFE---SDITFTLRNLEDTDAIDQFIKANQVDKV  150 (437)
T ss_dssp             EETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECC-CCCC---CTTEECCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             EeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccc-cccc---CceEEeeccHHHHHHHHHhhhccCCcEE
Confidence            45788999999999887643     2468999999999999864 4444   36788899999988877654  357899


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  154 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~  154 (352)
                      +|||||++|+|+|..++++|.+||++++.+++++ .++++..+.+.+.++++||++++++.+++++..      .+.+++
T Consensus       151 vViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~-~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~------~v~~~~  223 (437)
T 4eqs_A          151 LVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAINGN------EITFKS  223 (437)
T ss_dssp             EEECCSHHHHHHHHHHHHHTCEEEEEESSSCCST-TSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT------EEEETT
T ss_pred             EEECCccchhhhHHHHHhcCCcceeeeeeccccc-cccchhHHHHHHHhhccceEEEeccEEEEecCC------eeeecC
Confidence            9999999999999999999999999999999987 489999999999999999999999999999743      578899


Q ss_pred             CCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      |+++++|.|++++|.+||+++++.+|++.+ +|+|.||+++||++|||||+|||+..+....+.....+.+..|.+||+.
T Consensus       224 g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~  303 (437)
T 4eqs_A          224 GKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASI  303 (437)
T ss_dssp             SCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHH
T ss_pred             CeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHH
Confidence            999999999999999999999999999876 6789999999999999999999999888777777777789999999999


Q ss_pred             HHHHHhcCCCCCCC-CCCeeeeeccCcCCCCcceeeEEeecCccc-------EEE--EcCC-------CCcEEEEEEE--
Q 018652          234 CIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE--IGNF-------DPKIATFWID--  294 (352)
Q Consensus       234 aa~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~--~~~~-------~~~~~~~~~~--  294 (352)
                      +|+||++....++. ..+..+...++.       .+..+|....+       ...  ....       ..-+.++.++  
T Consensus       304 ~a~ni~g~~~~~~~~~~~~~~~~~~~p-------~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~  376 (437)
T 4eqs_A          304 VAEQIAGNDTIEFKGFLGNNIVKFFDY-------TFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTS  376 (437)
T ss_dssp             HHHHHHSCTTCCCCCBCCCEEEEETTE-------EEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEEEEETT
T ss_pred             HHHHHcCCCCcccccceeEEeeeeccc-------eEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEEEEECC
Confidence            99999976544332 233222222221       14445543321       111  1110       1225566664  


Q ss_pred             CCEEEEEEeecCC-HHHhhHH-HHHHhCCCCCChh-h--hcCCCchHHH
Q 018652          295 SGKLKGVLVESGS-PEEFQLL-PTLARSQPFVDKA-K--LQQASSVEEA  338 (352)
Q Consensus       295 ~~~v~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~~-~--~~~~~~~~e~  338 (352)
                      +++|+|+++++.+ ++++... ..+|+.+.++++. .  +.-||+++++
T Consensus       377 ~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~  425 (437)
T 4eqs_A          377 NRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHP  425 (437)
T ss_dssp             TCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCS
T ss_pred             CCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCch
Confidence            5899999987654 7777644 4567999998883 3  3346777765

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.4e-41  Score=315.01  Aligned_cols=285  Identities=22%  Similarity=0.367  Sum_probs=228.4

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +++++|+.||++++.|+ .+|+++.||+||||||++|+. |+++|  .++++++++..++..+.+.+..+++++|||+|+
T Consensus        78 ~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~-p~i~G--~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~  153 (367)
T 1xhc_A           78 RLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARARE-PQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGF  153 (367)
T ss_dssp             ECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEECC-CCSBT--GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSH
T ss_pred             EECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCCC-CCCCC--cCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCH
Confidence            45678999999999998 678889999999999999874 55666  567888889988888877666679999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      +|+|+|..|+++|.+||++++.+++++  +++++.+.+.+.+++.||++++++++++++.  +    .+.+++|+ +++|
T Consensus       154 ~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~----~v~~~~g~-i~~D  224 (367)
T 1xhc_A          154 IGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTNSGF-IEGK  224 (367)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEETTEE-EECS
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--e----EEEECCCE-EEcC
Confidence            999999999999999999999999887  8999999999999999999999999999972  1    56778887 9999


Q ss_pred             EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      .|++|+|.+|+++++++++++.+ ++|.||+++||+.|+|||+|||+..+...      ...|..|..||+.+|+||.+ 
T Consensus       225 ~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~aa~~i~g-  296 (367)
T 1xhc_A          225 VKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------AGTAKAAMEQARVLADILKG-  296 (367)
T ss_dssp             CEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------CCSHHHHHHHHHHHHHHHTT-
T ss_pred             EEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCCC------ccHHHHHHHHHHHHHHHhcC-
Confidence            99999999999999999999887 46999999999999999999999764321      12778899999999999996 


Q ss_pred             CCCCCCCCCeeee-eccCcCCCCcceeeEEeecCcccEEEEcCCCCcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHh
Q 018652          242 QTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  319 (352)
Q Consensus       242 ~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~  319 (352)
                      ...+|...+++|+ ..++.       .+..+|....+....    ..|.++++++++|+|+++ .+.......++++|.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~-------~~~~vG~~~~~~~~~----~~~~k~~~~~~~ilG~~~-~g~~~~~~~~~~~i~  363 (367)
T 1xhc_A          297 EPRRYNFKFRSTVFKFGKL-------QIAIIGNTKGEGKWI----EDNTKVFYENGKIIGAVV-FNDIRKATKLEKEIL  363 (367)
T ss_dssp             CCCCCCSSCCEEEEEETTE-------EEEEEECCSSCEEEE----ETTEEEEC-----CEEEE-ESCHHHHHHHC----
T ss_pred             CCccCCCCCCceEEEECCc-------eEEEECCCCCCCccc----ceEEEEEEECCEEEEEEE-ECChHHHHHHHHHHh
Confidence            3456666555543 44432       267778765432211    346788888899999997 677777888887763

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=9.8e-41  Score=323.61  Aligned_cols=331  Identities=24%  Similarity=0.334  Sum_probs=256.2

Q ss_pred             ccCCceEEEECCCcEEEeCC---Ce--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--CCCeE
Q 018652            2 IYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~---g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~v   74 (352)
                      +++++|++||++.+.+.+.+   |+  .+.||+||||||++|+ .|.++|.+.++++++++..+...+...+.  .++++
T Consensus        84 ~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v  162 (472)
T 3iwa_A           84 LVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKAN-RPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKA  162 (472)
T ss_dssp             ECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEE
T ss_pred             EECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEE
Confidence            46789999999999888765   65  7999999999999986 46677877788999999988888776653  47999


Q ss_pred             EEECCChHHHHHHHHHHhC-CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC
Q 018652           75 VVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  153 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~  153 (352)
                      +|||+|++|+|+|..|++. |.+|+++++.++++++.+++++.+.+.+.+++.||++++++.|++++.. ++.+ .+.+.
T Consensus       163 vViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~~  240 (472)
T 3iwa_A          163 VIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NGKV-ARVIT  240 (472)
T ss_dssp             EEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBE-EEEEE
T ss_pred             EEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CCeE-EEEEe
Confidence            9999999999999999999 9999999999999986789999999999999999999999999999863 4444 37778


Q ss_pred             CCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHH
Q 018652          154 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  232 (352)
Q Consensus       154 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~  232 (352)
                      +|+++++|.||+|+|++|++++++++|++.+ +|+|.||++++|+.|+|||+|||+..+....|.....+.+..|..||+
T Consensus       241 ~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  320 (472)
T 3iwa_A          241 DKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGR  320 (472)
T ss_dssp             SSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHH
T ss_pred             CCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecchHHHHHHHHH
Confidence            8999999999999999999999888899875 688999999999999999999999877666565555567778999999


Q ss_pred             HHHHHHhcCCCCCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EEEc---------CCCCcEEEEEEE
Q 018652          233 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG---------NFDPKIATFWID  294 (352)
Q Consensus       233 ~aa~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~~~---------~~~~~~~~~~~~  294 (352)
                      .+|+||++........+|++|...++..       +..+|....+       .  ....         .....|.++.++
T Consensus       321 ~aa~~i~g~~~~~~~~~~~~~~~~~~~~-------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~  393 (472)
T 3iwa_A          321 VIGTNLADGDATFPGAVGSWAVKLFEGS-------ASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMTLQLVVD  393 (472)
T ss_dssp             HHHHHHTTCCCCCCCBCCCEEEECSSCE-------EEEEECCHHHHHHTTCCEEEEEEEC-----------CEEEEEEEE
T ss_pred             HHHHHhcCCCccCCCCCcceEEEECCce-------eEEEECCHHHHHHcCCceEEEEEecCCccCccCCCceEEEEEEEE
Confidence            9999999654433335677777776532       5666654321       1  1110         011235666664


Q ss_pred             --CCEEEEEEeecC---CHHHhh-HHHHHHhCCCCCChhh--hcCC-CchHHHHHHH
Q 018652          295 --SGKLKGVLVESG---SPEEFQ-LLPTLARSQPFVDKAK--LQQA-SSVEEALEIA  342 (352)
Q Consensus       295 --~~~v~g~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~--~~~~-~~~~e~~~~~  342 (352)
                        +++|+|+++++.   .+.++. .+..+|+.+.++++..  .+.+ |+++|+....
T Consensus       394 ~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~  450 (472)
T 3iwa_A          394 RPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPFASAMDIV  450 (472)
T ss_dssp             TTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC--------CCHH
T ss_pred             CCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCCcccHH
Confidence              689999998666   224554 5556678999888833  3454 8888876543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=1.2e-40  Score=321.27  Aligned_cols=323  Identities=19%  Similarity=0.234  Sum_probs=253.4

Q ss_pred             ccCCceEEEECCCcEEEeC---CCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEEC
Q 018652            2 IYQDPVTSIDIEKQTLITN---SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG   78 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~---~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG   78 (352)
                      +++++|++||++++.+.+.   ++..+.||+||||||++|+ .|+++|.+.+++++.++..++..+......+++++|||
T Consensus        76 ~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViG  154 (452)
T 3oc4_A           76 LLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQF-STQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIG  154 (452)
T ss_dssp             ECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBC-CCCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEEC
T ss_pred             EECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEEC
Confidence            4688999999999988763   5668999999999999986 46678877788998887777777666667899999999


Q ss_pred             CChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEE
Q 018652           79 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI  158 (352)
Q Consensus        79 gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i  158 (352)
                      +|++|+|+|..|++.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.+++++.. ++.+ .+.+++| ++
T Consensus       155 gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~~~g-~i  231 (452)
T 3oc4_A          155 AGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLETSEQ-EI  231 (452)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEESSC-EE
T ss_pred             CCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEECCC-EE
Confidence            9999999999999999999999999999987789999999999999999999999999999854 3444 6777777 89


Q ss_pred             EcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652          159 DADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  237 (352)
Q Consensus       159 ~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~  237 (352)
                      ++|.||+|+|++|++++++.. +..+ +|+|.||+++||+.|+|||+|||+..+....+.....+.+..|..||+.+|+|
T Consensus       232 ~aD~Vv~A~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~  310 (452)
T 3oc4_A          232 SCDSGIFALNLHPQLAYLDKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANN  310 (452)
T ss_dssp             EESEEEECSCCBCCCSSCCTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTS
T ss_pred             EeCEEEECcCCCCChHHHHhh-hccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHH
Confidence            999999999999999888654 6654 68899999999999999999999987655555544456888899999999999


Q ss_pred             HhcCCCCCCC-CCCeeeeeccCcCCCCcceeeEEeecCccc-------E--EEEc-------CCCCcEEEEEEEC--CEE
Q 018652          238 LLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG-------NFDPKIATFWIDS--GKL  298 (352)
Q Consensus       238 i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~~~-------~~~~~~~~~~~~~--~~v  298 (352)
                      |++.. ..+. ..+..++.+|+..       +..+|....+       .  ....       .....|.++.++.  ++|
T Consensus       311 i~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~i  382 (452)
T 3oc4_A          311 LEEKT-HRFIGSLRTMGTKVGDYY-------LASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQRV  382 (452)
T ss_dssp             SSSCC-CCCCCCCCCEEEEETTEE-------EEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEETTTCBE
T ss_pred             hcCCC-ccCCCccccEEEEEcCee-------EEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEECCCCEE
Confidence            98643 3333 3445566777632       5566654321       1  1110       0113466777663  899


Q ss_pred             EEEEeecC-CHHHhh-HHHHHHhCCCCCChhh---hcCCCchHH
Q 018652          299 KGVLVESG-SPEEFQ-LLPTLARSQPFVDKAK---LQQASSVEE  337 (352)
Q Consensus       299 ~g~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~e  337 (352)
                      +|+++++. ++.++. .+..+|+.+.++++..   +..+|+++|
T Consensus       383 lG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~  426 (452)
T 3oc4_A          383 LGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTN  426 (452)
T ss_dssp             EEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSC
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCC
Confidence            99999776 576665 5566779999988832   567888887

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=8.5e-41  Score=321.87  Aligned_cols=329  Identities=20%  Similarity=0.268  Sum_probs=257.9

Q ss_pred             ccCCceEEEECCCcEEEeCC---Ce--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--CCCeE
Q 018652            2 IYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~---g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~v   74 (352)
                      +++++|+.|+++.+.|.+.+   |+  ++.||+||||||++|+ .|++||.+.++++++++..+...+.+.+.  .++++
T Consensus        74 ~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~v  152 (447)
T 1nhp_A           74 FSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF-ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNV  152 (447)
T ss_dssp             EETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEE
T ss_pred             EECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeE
Confidence            46788999999999888754   65  4899999999999986 45678876678988888888888777666  78999


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  154 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~  154 (352)
                      +|||+|++|+|+|..|++.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.+++++.+  +.+..+.+ +
T Consensus       153 vIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~-~  229 (447)
T 1nhp_A          153 VVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVT-D  229 (447)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEE-S
T ss_pred             EEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEE-C
Confidence            99999999999999999999999999999998886789999999999999999999999999999853  33334555 5


Q ss_pred             CCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      ++++++|.||+|+|.+|++++++.. ++.+ +|+|.||++++|+.|+|||+|||+..+....+...+.+++..|..||+.
T Consensus       230 ~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~  308 (447)
T 1nhp_A          230 KNAYDADLVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRF  308 (447)
T ss_dssp             SCEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHH
T ss_pred             CCEEECCEEEECcCCCCChHHHHhh-hhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHH
Confidence            6789999999999999999988877 7764 5779999999999999999999998765544554455688999999999


Q ss_pred             HHHHHhcCCCCCCC-CCCeeeeeccCcCCCCcceeeEEeecCccc-------EE-----EEcC------CCCcEEEEEEE
Q 018652          234 CIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-----EIGN------FDPKIATFWID  294 (352)
Q Consensus       234 aa~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-----~~~~------~~~~~~~~~~~  294 (352)
                      +|+||++.. .++. ..|++|+..++..       +...|....+       ..     ....      ....|.+++++
T Consensus       309 aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  380 (447)
T 1nhp_A          309 AVKNLEEPV-KPFPGVQGSSGLAVFDYK-------FASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYD  380 (447)
T ss_dssp             HHHTSSSCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEEC
T ss_pred             HHHhhcCCC-CCCCCccccEEEEECCee-------eEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEEEEEE
Confidence            999999643 3333 4577787777542       5566654321       11     0110      01125566665


Q ss_pred             --CCEEEEEEeecCC-HHHhh-HHHHHHhCCCCCChhh---hcCCCchHHHHHHHH
Q 018652          295 --SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVDKAK---LQQASSVEEALEIAR  343 (352)
Q Consensus       295 --~~~v~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~~  343 (352)
                        +++|+|+++++.. +.++. .+..+|+.+.++++..   +..||+++|++....
T Consensus       381 ~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~  436 (447)
T 1nhp_A          381 PETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIIN  436 (447)
T ss_dssp             TTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHH
T ss_pred             CCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcccHHH
Confidence              5899999997776 65554 5667789999988833   467999988765443

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.3e-40  Score=317.95  Aligned_cols=325  Identities=21%  Similarity=0.250  Sum_probs=259.1

Q ss_pred             ccCCceEEEECCCcEEEeCCC-eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--CCCeEEEEC
Q 018652            2 IYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVG   78 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g-~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~vvVvG   78 (352)
                      +++++|+.++++.+.|.++++ ..+.||+||||||++|+ .|.++|.+.+++++.++..++..+.+...  .+++++|||
T Consensus        77 ~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViG  155 (449)
T 3kd9_A           77 HLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQ-VPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIG  155 (449)
T ss_dssp             ETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEEC-CCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEEC
T ss_pred             EecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEEC
Confidence            467799999999999998888 48999999999999986 46678877888998888888888777665  789999999


Q ss_pred             CChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEE
Q 018652           79 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTI  158 (352)
Q Consensus        79 gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i  158 (352)
                      +|++|+|+|..|++.|.+|+++++.++++++.+++++.+.+.+.+++. |++++++.+.+++..+  .+..+ +.+++++
T Consensus       156 gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~--~v~~v-~~~g~~i  231 (449)
T 3kd9_A          156 GGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE--RVEKV-VTDAGEY  231 (449)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS--SCCEE-EETTEEE
T ss_pred             CCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC--cEEEE-EeCCCEE
Confidence            999999999999999999999999999998768999999999999999 9999999999998542  33233 4567789


Q ss_pred             EcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652          159 DADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  237 (352)
Q Consensus       159 ~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~  237 (352)
                      ++|.||+|+|++|++++++.+|++.+ +|+|.||++++|+.|+|||+|||+..+....|.......+..|..||+.+|+|
T Consensus       232 ~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~  311 (449)
T 3kd9_A          232 KAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSN  311 (449)
T ss_dssp             ECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHH
T ss_pred             ECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHH
Confidence            99999999999999999999999876 57799999999999999999999987765556554556888999999999999


Q ss_pred             HhcCCCCCCC-CCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-----EcC------CCCcEEEEEEEC--C
Q 018652          238 LLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-----IGN------FDPKIATFWIDS--G  296 (352)
Q Consensus       238 i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-----~~~------~~~~~~~~~~~~--~  296 (352)
                      |++... ++. ..|++|+..++..       +..+|....       +...     .+.      ....|.++.++.  +
T Consensus       312 i~g~~~-~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~  383 (449)
T 3kd9_A          312 IAGKEL-HFPGVLGTAVTKFMDVE-------IGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKGVVDNETN  383 (449)
T ss_dssp             HTTCCC-CCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTC
T ss_pred             hcCCCc-cCCCcccceEEEEcCcE-------EEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEEEEECCCC
Confidence            996543 443 4577777776542       666675432       1111     110      012366776663  8


Q ss_pred             EEEEEEeecCCHHHhhH-HHHHHhCCCCCChhh---hcCCCchHHHH
Q 018652          297 KLKGVLVESGSPEEFQL-LPTLARSQPFVDKAK---LQQASSVEEAL  339 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~e~~  339 (352)
                      +|+|+++++..+.++.. +..+|+.+.++++..   +..+|+++++.
T Consensus       384 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~  430 (449)
T 3kd9_A          384 RLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPVW  430 (449)
T ss_dssp             BEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCSS
T ss_pred             EEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCch
Confidence            99999998888887764 455678998887732   45567766543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=1.1e-39  Score=316.76  Aligned_cols=328  Identities=20%  Similarity=0.316  Sum_probs=257.9

Q ss_pred             ccCCceEEEECCCcEEEeCC---Ce--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc--CCCeE
Q 018652            2 IYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~---g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~v   74 (352)
                      +++++|+.|+++++.|.+.+   |+  ++.||+||||||++|+ .|+++|.+.++++++++.++...+.+.+.  .++++
T Consensus       111 ~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~v  189 (480)
T 3cgb_A          111 KVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDV  189 (480)
T ss_dssp             ESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEE
T ss_pred             EeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCccc-CCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeE
Confidence            45678999999988887753   66  7999999999999986 45677876678998889888888777665  78999


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  154 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~  154 (352)
                      +|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++.+  +.+..+.++ 
T Consensus       190 vViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~v~~v~~~-  265 (480)
T 3cgb_A          190 TIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN--ERVEAVETD-  265 (480)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS-SSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SBEEEEEET-
T ss_pred             EEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh-cCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC--CcEEEEEEC-
Confidence            9999999999999999999999999999988887 589999999999999999999999999999853  445456665 


Q ss_pred             CCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          155 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      +.++++|.||+|+|.+|++++++.++++.+ +|+|.||+++||+.|+|||+|||+..+....|...+.+++..|..||+.
T Consensus       266 ~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~  345 (480)
T 3cgb_A          266 KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRL  345 (480)
T ss_dssp             TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHH
T ss_pred             CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHH
Confidence            457999999999999999999999998875 6889999999999999999999998765554554445688899999999


Q ss_pred             HHHHHhcCCCCCCC-CCCeeeeeccCcCCCCcceeeEEeecCccc---------E-EEEcC--C----C--CcEEEEEEE
Q 018652          234 CIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------T-IEIGN--F----D--PKIATFWID  294 (352)
Q Consensus       234 aa~~i~~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~-~~~~~--~----~--~~~~~~~~~  294 (352)
                      +|+||++. ..++. ..+++|...++..       +..+|....+         . .....  .    .  ..|.+++++
T Consensus       346 aa~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~  417 (480)
T 3cgb_A          346 AGLNMLDK-RRAFKGTLGTGIIKFMNLT-------LARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPLYLKLLYR  417 (480)
T ss_dssp             HHHHHTTC-CCCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEE
T ss_pred             HHHHhcCC-CccCCCccceeEEEECCcE-------EEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceEEEEEEEE
Confidence            99999963 33443 3446666766542       6667754321         1 11110  0    1  125566664


Q ss_pred             --CCEEEEEEeecCC-HHHhh-HHHHHHhCCCCCCh-hh--hcCCCchHHHHHHH
Q 018652          295 --SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVDK-AK--LQQASSVEEALEIA  342 (352)
Q Consensus       295 --~~~v~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~-~~--~~~~~~~~e~~~~~  342 (352)
                        +++|+|+++++.. +.++. .+..+|+.+.++++ ..  +..+|+++|++...
T Consensus       418 ~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~  472 (480)
T 3cgb_A          418 SDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVWDPI  472 (480)
T ss_dssp             TTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSCHH
T ss_pred             CCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCchhHH
Confidence              6999999997776 66654 56677899999888 33  35789998865544

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=7.7e-39  Score=302.35  Aligned_cols=294  Identities=21%  Similarity=0.262  Sum_probs=237.8

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCCh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY   81 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~   81 (352)
                      +.+++|+.+++++++|.+++ ..+.||+||+|||++|+ .|+++|...+++++.+++.++..+...+..+++++|||+|+
T Consensus        78 ~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~  155 (384)
T 2v3a_A           78 LTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPI-RVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGL  155 (384)
T ss_dssp             ECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEEC-CCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSH
T ss_pred             EeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcC-CCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCH
Confidence            34778999999889999865 46999999999999986 45677766678999999999888887777899999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcC
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD  161 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D  161 (352)
                      +|+|+|..|++.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.+++++.+++  ...+.+.+|+++++|
T Consensus       156 ~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d  233 (384)
T 2v3a_A          156 IGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGE--GLEAHLSDGEVIPCD  233 (384)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETT--EEEEEETTSCEEEES
T ss_pred             HHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCC--EEEEEECCCCEEECC
Confidence            999999999999999999999999988767999999999999999999999999999986432  246788899999999


Q ss_pred             EEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          162 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       162 ~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      .||+|+|.+|++++++.++++.++| |.||++++|+.|+|||+|||+..+...      .++|..|..||+.+|+||++.
T Consensus       234 ~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~------~~~~~~a~~~g~~~a~~i~g~  306 (384)
T 2v3a_A          234 LVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGLN------LLYVMPLMACARALAQTLAGN  306 (384)
T ss_dssp             EEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTBC------CCSHHHHHHHHHHHHHHHTTC
T ss_pred             EEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCCC------cchHHHHHHHHHHHHHHhcCC
Confidence            9999999999998999999988765 999999999999999999999754321      347888999999999999964


Q ss_pred             CCCCCC--CCCeeeeeccCcCCCCcceeeEEeecCcc---cEEEEcCCCCcEEEEEEE-CCEEEEEEeecCCHHHhhHHH
Q 018652          242 QTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWID-SGKLKGVLVESGSPEEFQLLP  315 (352)
Q Consensus       242 ~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~-~~~v~g~~~~~~~~~~~~~~~  315 (352)
                      . .+++  .+||++.. .++       .++..|....   .....++. ..|.+++++ +++|+|+++++..+.++..+.
T Consensus       307 ~-~~~~~~~~p~~~~~-~~~-------~~~~~g~~~~~~~~~~~~~~~-~g~~~~~~~~~~~i~G~~~~g~~a~e~~~~~  376 (384)
T 2v3a_A          307 P-SQVAYGPMPVTVKT-PAC-------PLVVSPPPRGMDGQWLVEGSG-TDLKVLCRDTAGRVIGYALTGAAVNEKLALN  376 (384)
T ss_dssp             C-CCCCCCCCCEEECC-TTS-------CEEEECCCTTCCCEEEEEEET-TEEEEEEECTTSCEEEEEEEGGGGGGHHHHH
T ss_pred             C-ccCCCCCcceEEEE-CCe-------eEEEecCCCCCCceEEEEecC-CcEEEEEEccCCEEEEEEEECcchHHHHHHH
Confidence            3 4444  56664211 111       2566665432   23333432 347777775 799999999877787765444


Q ss_pred             H
Q 018652          316 T  316 (352)
Q Consensus       316 ~  316 (352)
                      +
T Consensus       377 ~  377 (384)
T 2v3a_A          377 K  377 (384)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=1.3e-38  Score=315.46  Aligned_cols=314  Identities=19%  Similarity=0.355  Sum_probs=251.0

Q ss_pred             ccCCceEEEECCCcEEEeCC---Ce--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhh--cCCCeE
Q 018652            2 IYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~---g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--~~~~~v   74 (352)
                      +++++|++||++.+.+++.+   |+  ++.||+||||||++|+ .|++||.+.++++++++..++..+.+.+  ..++++
T Consensus        76 ~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~v  154 (565)
T 3ntd_A           76 RVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPI-VPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHA  154 (565)
T ss_dssp             ETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEE
T ss_pred             EECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEE
Confidence            46889999999999888753   53  7899999999999986 4667887788899999988887776543  457899


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec------------
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG------------  142 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~------------  142 (352)
                      +|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++..            
T Consensus       155 vViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~  233 (565)
T 3ntd_A          155 TVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGE  233 (565)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTC
T ss_pred             EEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccccccccc
Confidence            9999999999999999999999999999999888 589999999999999999999999999999862            


Q ss_pred             ------CCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccC
Q 018652          143 ------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY  215 (352)
Q Consensus       143 ------~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~  215 (352)
                            .++.+ .+.+.+|+++++|.||+|+|++|++++++.+|++.+ +|+|.||++++|+.|+|||+|||+..+....
T Consensus       234 ~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~  312 (565)
T 3ntd_A          234 DTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVT  312 (565)
T ss_dssp             CCTTCCTTCEE-EEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTT
T ss_pred             ccccccCCCcE-EEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeEeeccccC
Confidence                  23333 566788999999999999999999999988898875 6889999999999999999999998776666


Q ss_pred             CcccccccHHHHHHHHHHHHHHHhcCCCCCCCCC-CeeeeeccCcCCCCcceeeEEeecCccc---------EEEE---c
Q 018652          216 DRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEI---G  282 (352)
Q Consensus       216 ~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~---~  282 (352)
                      |.....+++..|..||+.+|+||++.. .++... |+.|+..|+..       +..+|....+         ....   +
T Consensus       313 g~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~~~~~~~~  384 (565)
T 3ntd_A          313 GQACLVPLAGPANRQGRMAADNMFGRE-ERYQGTQGTAICKVFDLA-------VGATGKNEKQLKQAGIAFEKVYVHTAS  384 (565)
T ss_dssp             CCEECCCCHHHHHHHHHHHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEES
T ss_pred             CceeecccHHHHHHHHHHHHHHhcCCC-ccCCCcccceEEEEcCcE-------EEEecCCHHHHHHcCCCeEEEEEecCc
Confidence            665556788999999999999999644 445544 44455666532       5666654321         1111   1


Q ss_pred             C--C----CCcEEEEEEE--CCEEEEEEeecCCH-HHhh-HHHHHHhCCCCCCh
Q 018652          283 N--F----DPKIATFWID--SGKLKGVLVESGSP-EEFQ-LLPTLARSQPFVDK  326 (352)
Q Consensus       283 ~--~----~~~~~~~~~~--~~~v~g~~~~~~~~-~~~~-~~~~~~~~~~~~~~  326 (352)
                      .  .    ...|.++.++  +++|+|+++++.++ .++. .+..+|+.+.++++
T Consensus       385 ~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~~  438 (565)
T 3ntd_A          385 HASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQ  438 (565)
T ss_dssp             SCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHHH
T ss_pred             ccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHH
Confidence            0  0    1235677664  68999999988887 6655 55566788888777

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=4.4e-38  Score=305.10  Aligned_cols=313  Identities=20%  Similarity=0.293  Sum_probs=238.1

Q ss_pred             ceEEEECCCcEEEeCC-C-eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652            6 PVTSIDIEKQTLITNS-G-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG   83 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~-g-~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g   83 (352)
                      ++..+|++...|.+.+ + +++.||+||+|||++|+. |+++|.+..+++   +..+.   ......+++++|||+|++|
T Consensus       118 ~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~-p~i~g~~~~~v~---t~~~~---~~~~~~~~~vvViGgG~~g  190 (474)
T 1zmd_A          118 YGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTP-FPGITIDEDTIV---SSTGA---LSLKKVPEKMVVIGAGVIG  190 (474)
T ss_dssp             EEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC-CTTCCCCSSSEE---CHHHH---TTCSSCCSEEEEECCSHHH
T ss_pred             EEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC-CCCCCCCcCcEE---cHHHH---hhccccCceEEEECCCHHH
Confidence            4556777666777776 4 579999999999999864 545564333443   22332   2222357899999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE-----cCCCCEE
Q 018652           84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK-----LEDGSTI  158 (352)
Q Consensus        84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~-----~~~g~~i  158 (352)
                      +|+|..|++.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.+++++.++++.+ .+.     ..+++++
T Consensus       191 ~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i  269 (474)
T 1zmd_A          191 VELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVI  269 (474)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEE
T ss_pred             HHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEE
Confidence            9999999999999999999999988568999999999999999999999999999986543322 344     3566789


Q ss_pred             EcCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHH
Q 018652          159 DADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI  235 (352)
Q Consensus       159 ~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa  235 (352)
                      ++|.||+|+|.+|++++  +++++++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|
T Consensus       270 ~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa  339 (474)
T 1zmd_A          270 TCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPM----------LAHKAEDEGIICV  339 (474)
T ss_dssp             EESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHH
T ss_pred             EcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCCCEEEeeecCCCCc----------cHHHHHHHHHHHH
Confidence            99999999999999987  778888876 5779999999999999999999997542          4566999999999


Q ss_pred             HHHhcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-------------EcCCCCcEEEEEEE
Q 018652          236 KALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPKIATFWID  294 (352)
Q Consensus       236 ~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~~~~~~~~  294 (352)
                      +||++... ..|..+|+++....+         +..+|....       +...             .++ ...|.+++++
T Consensus       340 ~~i~~~~~~~~~~~~p~~~~~~~~---------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~  409 (474)
T 1zmd_A          340 EGMAGGAVHIDYNCVPSVIYTHPE---------VAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNAD-TDGMVKILGQ  409 (474)
T ss_dssp             HHHTTCCCCCCGGGCCEEECSSSE---------EEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTC-CCCEEEEEEE
T ss_pred             HHhcCCCCcCCCCCCCEEEECCCC---------eEEEeCCHHHHHhcCCCEEEEEEecccchhhhhcCC-CcEEEEEEEE
Confidence            99996432 234557776422211         445554432       1111             111 2357788776


Q ss_pred             --CCEEEEEEeecCCHHHhh-HHHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcC
Q 018652          295 --SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK-AK-LQQASSVEEALEIARAAL  346 (352)
Q Consensus       295 --~~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~  346 (352)
                        +++|+|+++++..+.++. .+..+|+.+.++++ .. ++.||+++|++..+++.+
T Consensus       410 ~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~  466 (474)
T 1zmd_A          410 KSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAA  466 (474)
T ss_dssp             TTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTCTHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHHHH
Confidence              689999999877776654 66677899999888 33 789999999999998653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=1e-37  Score=302.06  Aligned_cols=312  Identities=17%  Similarity=0.255  Sum_probs=236.1

Q ss_pred             ceEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652            6 PVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG   83 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g   83 (352)
                      ++..+++....|.+++|  +.+.||+||+|||++|+. |+++|.+.++++   +..+.   ......+++++|||+|++|
T Consensus       114 ~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~-p~~~g~~~~~v~---t~~~~---~~~~~~~~~vvViGgG~~g  186 (468)
T 2qae_A          114 EGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTE-LPFLPFDEKVVL---SSTGA---LALPRVPKTMVVIGGGVIG  186 (468)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-BTTBCCCSSSEE---CHHHH---HTCSSCCSEEEEECCSHHH
T ss_pred             EEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCC-CCCCCCCcCcee---chHHH---hhcccCCceEEEECCCHHH
Confidence            34457777677777788  789999999999999864 445564444543   33333   2223467999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHH-HhCCcEEEcCCeEEEEEecCCCcEEEEEcC--CC--CEE
Q 018652           84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STI  158 (352)
Q Consensus        84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l-~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--~g--~~i  158 (352)
                      +|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+ ++.||++++++++++++..+++  ..+.+.  +|  +++
T Consensus       187 ~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~i  263 (468)
T 2qae_A          187 LELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDS--VSLEVEGKNGKRETV  263 (468)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSS--EEEEEECC---EEEE
T ss_pred             HHHHHHHHHhCCEEEEEecCCcccc-cCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCe--EEEEEEcCCCceEEE
Confidence            9999999999999999999999987 48999999999999 9999999999999999865333  244544  66  579


Q ss_pred             EcCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccc-cCCccCCcccccccHHHHHHHHHHH
Q 018652          159 DADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA-FPLKMYDRTARVEHVDHARQSAQHC  234 (352)
Q Consensus       159 ~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~-~~~~~~~~~~~~~~~~~A~~~g~~a  234 (352)
                      ++|.||+|+|.+|++++  +++++++.+ +|+|.||+++||+.|+|||+|||+. .+.          .+..|..||+.+
T Consensus       264 ~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~----------~~~~A~~~g~~a  333 (468)
T 2qae_A          264 TCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGPM----------LAHKAEDEGVAC  333 (468)
T ss_dssp             EESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGBSSSCS----------CHHHHHHHHHHH
T ss_pred             ECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCCEEEeeccCCCCCc----------cHhHHHHHHHHH
Confidence            99999999999999987  788888876 5789999999999999999999998 332          456699999999


Q ss_pred             HHHHhcCCCCC--CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-------------EcCCCCcEEEEE
Q 018652          235 IKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPKIATFW  292 (352)
Q Consensus       235 a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~~~~~~  292 (352)
                      |++|++. ..+  +..+|++  ..++.       .+..+|....       +...             .++ ...|.+++
T Consensus       334 a~~i~~~-~~~~~~~~~p~~--~~~~~-------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~kl~  402 (468)
T 2qae_A          334 AEILAGK-PGHVNYGVIPAV--IYTMP-------EVASVGKSEDELKKEGVAYKVGKFPFNANSRAKAVST-EDGFVKVL  402 (468)
T ss_dssp             HHHHTTC-CCCCCTTSCCEE--ECSSS-------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTC-CCCEEEEE
T ss_pred             HHHHcCC-CccCCCCCCCEE--EECCC-------ceEEEeCCHHHHHhcCCCEEEEEEecccchhhhhcCC-CcEEEEEE
Confidence            9999964 333  4445654  22211       1445554321       1111             111 23577877


Q ss_pred             EE--CCEEEEEEeecCCHHHhh-HHHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652          293 ID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       293 ~~--~~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      ++  +++|+|+++++..+.++. .+..+|+.+.++++ .. ++.||+++|++..+++++..
T Consensus       403 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~  463 (468)
T 2qae_A          403 VDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACMALFA  463 (468)
T ss_dssp             EETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTHHHHHHHHHHHHS
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHHhc
Confidence            76  699999999888877765 55567799999888 23 68999999999999876543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=2.1e-37  Score=303.59  Aligned_cols=315  Identities=22%  Similarity=0.290  Sum_probs=244.4

Q ss_pred             CCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHH-HhhcCC-CeEEEECCCh
Q 018652            4 QDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI-SSLEKA-KKVVVVGGGY   81 (352)
Q Consensus         4 ~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~~-~~vvVvGgG~   81 (352)
                      +++|+.+++  +.|.++ ++.+.||+||||||++|. .|+++|...+++++.   .+   +. ...... ++++|||+|+
T Consensus       155 ~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~-~p~i~G~~~~~v~~~---~~---~~~~l~~~~g~~vvViGgG~  224 (523)
T 1mo9_A          155 NCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPG-TLDVPGVNAKGVFDH---AT---LVEELDYEPGSTVVVVGGSK  224 (523)
T ss_dssp             SSCCEEEET--TEEEET-TEEEEBSCEEECCCEECC-CCCSTTTTSBTEEEH---HH---HHHHCCSCCCSEEEEECCSH
T ss_pred             eeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCC-CCCCCCcccCcEeeH---HH---HHHHHHhcCCCeEEEECCCH
Confidence            667888886  577776 778999999999999986 455677655566643   22   22 222234 9999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcE--EEEEcCCCC-EE
Q 018652           82 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV--AAVKLEDGS-TI  158 (352)
Q Consensus        82 ~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~--~~v~~~~g~-~i  158 (352)
                      +|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|++++..+++.+  ..+.+.+|+ ++
T Consensus       225 ~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i  303 (523)
T 1mo9_A          225 TAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRI  303 (523)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEE
Confidence            9999999999999999999999998874 8999999999999999999999999999986545543  357788887 89


Q ss_pred             EcCEEEEccCCCCCch-hhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHH
Q 018652          159 DADTIVIGIGAKPTVS-PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK  236 (352)
Q Consensus       159 ~~D~vi~a~G~~p~~~-~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~  236 (352)
                      ++|.||+|+|.+|+++ +++++|++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|+
T Consensus       304 ~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~  373 (523)
T 1mo9_A          304 ETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKARKSGCYAAR  373 (523)
T ss_dssp             ECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHHHHHHHHHH
T ss_pred             EcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccCCCCEEEEeecCCCcc----------cHHHHHHHHHHHHH
Confidence            9999999999999998 7999999875 6779999999999999999999997542          45569999999999


Q ss_pred             HHhcCCCC-CCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE----EcC---------------------
Q 018652          237 ALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE----IGN---------------------  283 (352)
Q Consensus       237 ~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~----~~~---------------------  283 (352)
                      ||++.... .+..+|+++....+         +..+|....       ++..    ..+                     
T Consensus       374 ~i~g~~~~~~~~~~p~~~~~~~~---------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (523)
T 1mo9_A          374 NVMGEKISYTPKNYPDFLHTHYE---------VSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGK  444 (523)
T ss_dssp             HHTTCCCCCCCCSCCEEEESSSE---------EEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHST
T ss_pred             HHcCCCCCCCCCCCCeEEECCCc---------eEEEeCCHHHHHhCCCCEEEEEEecccccccccccccccccccceEEe
Confidence            99964322 25667877543332         444554321       1111    000                     


Q ss_pred             ---CCCcEEEEEEE--CCEEEEEEeecCCHHHhh-HHHHHHhCCCCCCh--hh--hcCCCchHHHHHHHHhcCCc
Q 018652          284 ---FDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AK--LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       284 ---~~~~~~~~~~~--~~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~--~~~~~~~~e~~~~~~~~~~~  348 (352)
                         ....|.++.++  +++|+|+++++..+.++. .+..+|+.+.++++  ..  ++.||+++|++..+++++.+
T Consensus       445 ~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~~Pt~~e~~~~~~~~~~~  519 (523)
T 1mo9_A          445 GTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRLRAGSKN  519 (523)
T ss_dssp             TTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHHHTTCSS
T ss_pred             ecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHhCCcceECCCHHHHHHHHHHhhHh
Confidence               01236677765  699999999877777654 56677899999888  22  68999999999999988654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.2e-38  Score=306.44  Aligned_cols=315  Identities=19%  Similarity=0.208  Sum_probs=242.3

Q ss_pred             CceEEEEC------CCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652            5 DPVTSIDI------EKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV   76 (352)
Q Consensus         5 ~~V~~id~------~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvV   76 (352)
                      .+++.+++      ....|.+++|+  .+.||+||+|||++|+. |+++|.+..++++..+..      .....+++++|
T Consensus       115 g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~-p~i~g~~~~~v~~~~~~~------~~~~~~~~vvV  187 (499)
T 1xdi_A          115 GRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRI-LPSAQPDGERILTWRQLY------DLDALPDHLIV  187 (499)
T ss_dssp             SEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECC-CGGGCCCSSSEEEGGGGG------GCSSCCSSEEE
T ss_pred             eEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC-CCCCCCCcCcEEehhHhh------hhhccCCeEEE
Confidence            34667777      23356666776  79999999999999864 556665555666543222      22235789999


Q ss_pred             ECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC
Q 018652           77 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS  156 (352)
Q Consensus        77 vGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~  156 (352)
                      ||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|++++.+++ .+ .+.+.+|+
T Consensus       188 iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~v-~v~~~~g~  264 (499)
T 1xdi_A          188 VGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADAALVLEESFAERGVRLFKNARAASVTRTGA-GV-LVTMTDGR  264 (499)
T ss_dssp             ESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSS-SE-EEEETTSC
T ss_pred             ECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-EE-EEEECCCc
Confidence            999999999999999999999999999999985 8999999999999999999999999999986433 33 56778888


Q ss_pred             EEEcCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          157 TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       157 ~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      ++++|.||+|+|.+|++++  ++++|++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.
T Consensus       265 ~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~  334 (499)
T 1xdi_A          265 TVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLP----------LASVAAMQGRI  334 (499)
T ss_dssp             EEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCS----------CHHHHHHHHHH
T ss_pred             EEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHH
Confidence            9999999999999999988  788898876 4779999999999999999999997542          45569999999


Q ss_pred             HHHHHhcCCCC--CCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE--E----------cCCCCcEEEEE
Q 018652          234 CIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE--I----------GNFDPKIATFW  292 (352)
Q Consensus       234 aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~--~----------~~~~~~~~~~~  292 (352)
                      +|++|++....  .+..+|+++....         .+..+|....       +...  .          ......|.+++
T Consensus       335 aa~~i~g~~~~~~~~~~~p~~~~~~~---------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~  405 (499)
T 1xdi_A          335 AMYHALGEGVSPIRLRTVAATVFTRP---------EIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIF  405 (499)
T ss_dssp             HHHHHTTCCCCCCCGGGCEEEECSSS---------EEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEE
T ss_pred             HHHHhcCCCCccCCCCCCcEEEEecC---------CceEeCCCHHHHHhCCCCEEEEEEecCcccceeecCCCceEEEEE
Confidence            99999964222  3455676532111         1556665432       1111  0          01123477887


Q ss_pred             EE--CCEEEEEEeecCCHHHhh-HHHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652          293 ID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       293 ~~--~~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      ++  +++|+|+++++..+.++. .+..+|+.+.++++ .. ++.+|+++|++..+++.+..
T Consensus       406 ~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~  466 (499)
T 1xdi_A          406 CRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLMA  466 (499)
T ss_dssp             EETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHCC
T ss_pred             EECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHHHHhc
Confidence            76  589999999888777765 55667899999888 23 78999999999999887654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=8.7e-38  Score=302.27  Aligned_cols=307  Identities=21%  Similarity=0.289  Sum_probs=231.3

Q ss_pred             EECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHH
Q 018652           10 IDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA   87 (352)
Q Consensus        10 id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A   87 (352)
                      ++.+...|.+++|  +++.||+||+|||++|+. |++++.+.. +   .+..+..   .....+++++|||+|++|+|+|
T Consensus       116 id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~-~~~~g~~~~-~---~~~~~~~---~~~~~~~~vvViGgG~~g~E~A  187 (464)
T 2a8x_A          116 ADANTLLVDLNDGGTESVTFDNAIIATGSSTRL-VPGTSLSAN-V---VTYEEQI---LSRELPKSIIIAGAGAIGMEFG  187 (464)
T ss_dssp             SSSSEEEEEETTSCCEEEEEEEEEECCCEEECC-CTTCCCBTT-E---ECHHHHH---TCSSCCSEEEEECCSHHHHHHH
T ss_pred             ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCCCCce-E---EecHHHh---hccccCCeEEEECCcHHHHHHH
Confidence            4544456667777  689999999999999864 444553322 2   2333332   2233579999999999999999


Q ss_pred             HHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CC--CEEEcCEEE
Q 018652           88 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIV  164 (352)
Q Consensus        88 ~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g--~~i~~D~vi  164 (352)
                      ..|++.|.+||++++.+++++ .+++++.+.+.+.+++.||++++++.+++++.++++ + .+.+. +|  +++++|.||
T Consensus       188 ~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~~~~D~vv  264 (464)
T 2a8x_A          188 YVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQ-V-TVTVTKDGVAQELKAEKVL  264 (464)
T ss_dssp             HHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSC-E-EEEEESSSCEEEEEESEEE
T ss_pred             HHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCe-E-EEEEEcCCceEEEEcCEEE
Confidence            999999999999999999998 589999999999999999999999999999864332 2 45553 56  579999999


Q ss_pred             EccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          165 IGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       165 ~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      +|+|++||+++  +++++++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|+||++.
T Consensus       265 ~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~  334 (464)
T 2a8x_A          265 QAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQ----------LAHVAEAQGVVAAETIAGA  334 (464)
T ss_dssp             ECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHHTC
T ss_pred             ECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeECcCCCcc----------CHHHHHHHHHHHHHHhcCC
Confidence            99999999987  788888876 5789999999999999999999997532          4566999999999999962


Q ss_pred             CCCC---CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-------------EcCCCCcEEEEEEE--CC
Q 018652          242 QTHT---YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPKIATFWID--SG  296 (352)
Q Consensus       242 ~~~~---~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~~~~~~~~--~~  296 (352)
                      ...+   |..+|++  ..++.       .+..+|....       +...             .++ ...|.+++++  ++
T Consensus       335 ~~~~~~~~~~~p~~--~~~~~-------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~  404 (464)
T 2a8x_A          335 ETLTLGDHRMLPRA--TFCQP-------NVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGD-PSGFVKLVADAKHG  404 (464)
T ss_dssp             CCCCCCCGGGSCEE--ECSSS-------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTC-CCCEEEEEEETTTT
T ss_pred             CCcccCCCCCCCEE--EECCC-------CeEEEcCCHHHHHhcCCCEEEEEEEcchhhhhhhcCC-CcEEEEEEEECCCC
Confidence            3333   4556654  11111       1444554321       1111             111 2347787775  69


Q ss_pred             EEEEEEeecCCHHHhh-HHHHHHhCCCCCCh--hhhcCCCchHHHHHHHHhcCC
Q 018652          297 KLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQASSVEEALEIARAALP  347 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~~~~~~  347 (352)
                      +|+|+++++..+.++. .+..+|+.+.++++  ..++.||+++|++..+++.+.
T Consensus       405 ~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~  458 (464)
T 2a8x_A          405 ELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFHGLV  458 (464)
T ss_dssp             EEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTHHHHHHHHHHH
T ss_pred             EEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHHHHHHHHHHHh
Confidence            9999999877776665 55567799998888  227899999999999987644

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.9e-37  Score=297.91  Aligned_cols=309  Identities=23%  Similarity=0.329  Sum_probs=232.2

Q ss_pred             ceEEEECCCcEEEeCCC-eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHH
Q 018652            6 PVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGM   84 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~g-~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~   84 (352)
                      ++..++++...|.+++| +++.||+||+|||++|+. |+++|.+.. +   .+..+.   ......+++++|||+|++|+
T Consensus       112 ~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~-~~~~g~~~~-v---~~~~~~---~~~~~~~~~vvViGgG~~g~  183 (455)
T 1ebd_A          112 EAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE-LPNFKFSNR-I---LDSTGA---LNLGEVPKSLVVIGGGYIGI  183 (455)
T ss_dssp             EEEEEETTEEEEEETTEEEEEECSEEEECCCEEECC-BTTBCCCSS-E---ECHHHH---HTCSSCCSEEEEECCSHHHH
T ss_pred             EEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCC-CCCCCccce-E---ecHHHH---hccccCCCeEEEECCCHHHH
Confidence            34457776667777777 689999999999999864 444553222 2   233333   22233579999999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCCEEEcC
Q 018652           85 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGSTIDAD  161 (352)
Q Consensus        85 e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~~i~~D  161 (352)
                      |+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++.+++ . ..+.+.   +++++++|
T Consensus       184 e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-~-~~v~~~~~g~~~~~~~D  260 (455)
T 1ebd_A          184 ELGTAYANFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEERED-G-VTVTYEANGETKTIDAD  260 (455)
T ss_dssp             HHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETT-E-EEEEEEETTEEEEEEES
T ss_pred             HHHHHHHHcCCcEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-e-EEEEEEeCCceeEEEcC
Confidence            999999999999999999999887 48999999999999999999999999999985432 2 234443   45689999


Q ss_pred             EEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652          162 TIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  238 (352)
Q Consensus       162 ~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  238 (352)
                      .||+|+|.+|++++  +++++++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|+||
T Consensus       261 ~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i  330 (455)
T 1ebd_A          261 YVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LAHKASYEGKVAAEAI  330 (455)
T ss_dssp             EEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHH
T ss_pred             EEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHH
Confidence            99999999999987  678888876 5789999999999999999999997532          4556999999999999


Q ss_pred             hcCCCCC--CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-------------EcCCCCcEEEEEEE--
Q 018652          239 LSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPKIATFWID--  294 (352)
Q Consensus       239 ~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~~~~~~~~--  294 (352)
                      .+. ..+  +..+|++  ..++..       +..+|....       +...             .++ ...|.+++++  
T Consensus       331 ~~~-~~~~~~~~~p~~--~~~~~~-------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~  399 (455)
T 1ebd_A          331 AGH-PSAVDYVAIPAV--VFSDPE-------CASVGYFEQQAKDEGIDVIAAKFPFAANGRALALND-TDGFLKLVVRKE  399 (455)
T ss_dssp             TSC-CCCCCCSCCCEE--ECSSSC-------EEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTC-CCCEEEEEEETT
T ss_pred             cCC-CccCCCCCCCEE--EECCCc-------eEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCC-CcEEEEEEEECC
Confidence            964 333  4445654  222111       344454321       1111             111 2347777776  


Q ss_pred             CCEEEEEEeecCCHHHhh-HHHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcC
Q 018652          295 SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK-AK-LQQASSVEEALEIARAAL  346 (352)
Q Consensus       295 ~~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~  346 (352)
                      +++|+|+++++..+.++. .+..+|+.+.++++ .. ++.||+++|++..+++++
T Consensus       400 ~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~  454 (455)
T 1ebd_A          400 DGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVA  454 (455)
T ss_dssp             TTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHT
T ss_pred             CCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHh
Confidence            699999999877777765 55566799999888 33 789999999999998754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.2e-37  Score=299.85  Aligned_cols=311  Identities=21%  Similarity=0.331  Sum_probs=234.0

Q ss_pred             eEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHH
Q 018652            7 VTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGM   84 (352)
Q Consensus         7 V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~   84 (352)
                      +..++++...|.+++|  +.+.||+||+|||++|+. |+++|.+.+++.+   ..+.   ......+++++|||+|++|+
T Consensus       118 ~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~-p~~~g~~~~~v~~---~~~~---~~~~~~~~~vvViGgG~~g~  190 (470)
T 1dxl_A          118 GKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKS-LPGVTIDEKKIVS---STGA---LALSEIPKKLVVIGAGYIGL  190 (470)
T ss_dssp             EEEEETTEEEECCSSSCCEEEECSEEEECCCEEECC-BTTBCCCSSSEEC---HHHH---TTCSSCCSEEEESCCSHHHH
T ss_pred             EEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCCCCcccEEe---HHHh---hhhhhcCCeEEEECCCHHHH
Confidence            3447766666666677  689999999999999864 4455544344432   2332   22223579999999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CC--CEEE
Q 018652           85 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STID  159 (352)
Q Consensus        85 e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g--~~i~  159 (352)
                      |+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+.+++.++++ + .+.+.   +|  ++++
T Consensus       191 e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~~~  267 (470)
T 1dxl_A          191 EMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDG-V-KLTVEPSAGGEQTIIE  267 (470)
T ss_dssp             HHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSS-E-EEEEEESSSCCCEEEE
T ss_pred             HHHHHHHHcCCcEEEEEcCCcccc-cccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCe-E-EEEEEecCCCcceEEE
Confidence            999999999999999999999987 589999999999999999999999999999854333 2 34443   44  6799


Q ss_pred             cCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHH
Q 018652          160 ADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK  236 (352)
Q Consensus       160 ~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~  236 (352)
                      +|.||+|+|++||+++  +++++++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|+
T Consensus       268 ~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~  337 (470)
T 1dxl_A          268 ADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM----------LAHKAEEDGVACVE  337 (470)
T ss_dssp             ESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC----------CHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEEeccCCCCc----------cHHHHHHHHHHHHH
Confidence            9999999999999987  778888876 5779999999999999999999997532          45569999999999


Q ss_pred             HHhcCCCCC--CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-------------EcCCCCcEEEEEEE
Q 018652          237 ALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPKIATFWID  294 (352)
Q Consensus       237 ~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~~~~~~~~  294 (352)
                      ||++. ..+  +..+|++  ..++.       .+..+|....       +...             .++ ...|.+++++
T Consensus       338 ~i~g~-~~~~~~~~~p~~--~~~~~-------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~  406 (470)
T 1dxl_A          338 YLAGK-VGHVDYDKVPGV--VYTNP-------EVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDN-AEGLVKIIAE  406 (470)
T ss_dssp             HHTTS-CCCCCTTSCCEE--ECSSS-------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSC-CCCEEEEEEE
T ss_pred             HHcCC-CcCCCCCCCCEE--EECCC-------ceEEEcCCHHHHHhcCCcEEEEEEecccchHHHhcCC-CcEEEEEEEE
Confidence            99964 334  4445653  22221       1444554321       1111             111 2357788775


Q ss_pred             --CCEEEEEEeecCCHHHhh-HHHHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCCc
Q 018652          295 --SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDKA-K-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       295 --~~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                        +++|+|+++++..+.++. .+..+|+.+.++++. . ++.||+++|++..+++.+..
T Consensus       407 ~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~  465 (470)
T 1dxl_A          407 KETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYD  465 (470)
T ss_dssp             TTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHS
T ss_pred             CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHHHhc
Confidence              689999999888777765 555677999998882 2 68999999999999876543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=8.7e-37  Score=295.48  Aligned_cols=311  Identities=18%  Similarity=0.250  Sum_probs=238.1

Q ss_pred             ceEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652            6 PVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG   83 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g   83 (352)
                      ++..+|+....|.+++|  +.+.||+||||||++|+ .|+++|.+..++.   +..   .+......+++++|||+|++|
T Consensus       116 ~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i~G~~~~~~~---~~~---~~~~~~~~~~~vvViGgG~~g  188 (467)
T 1zk7_A          116 EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPA-VPPIPGLKESPYW---TST---EALASDTIPERLAVIGSSVVA  188 (467)
T ss_dssp             EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEEC-CCCCTTTTTSCCB---CHH---HHHHCSSCCSEEEEECCSHHH
T ss_pred             EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCC-CCCCCCCCcCcee---cHH---HHhcccccCCEEEEECCCHHH
Confidence            46678887778888888  68999999999999986 4556664333332   333   333334468999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEE
Q 018652           84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  163 (352)
Q Consensus        84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v  163 (352)
                      +|+|..|+++|.+|+++++.+++++  +++++.+.+.+.+++.||++++++.|++++.+ ++ ...+.++ +.++++|.|
T Consensus       189 ~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~-~~~i~aD~V  263 (467)
T 1zk7_A          189 LELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHM-DG-EFVLTTT-HGELRADKL  263 (467)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHHHHTTCEEETTCCEEEEEEE-TT-EEEEEET-TEEEEESEE
T ss_pred             HHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CC-EEEEEEC-CcEEEcCEE
Confidence            9999999999999999999999887  89999999999999999999999999999854 22 3356665 457999999


Q ss_pred             EEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          164 VIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       164 i~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      |+|+|.+|++++  ++.++++.+ +|+|.||++++|+.|+|||+|||+..+.          .+..|..||+.+|.||++
T Consensus       264 v~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~  333 (467)
T 1zk7_A          264 LVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTG  333 (467)
T ss_dssp             EECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECSTTBSSCC----------CHHHHHHHHHHHHHHHTT
T ss_pred             EECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcC
Confidence            999999999875  577888876 5679999999999999999999998643          456799999999999986


Q ss_pred             CCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEEE------------cCCCCcEEEEEEE--CCEE
Q 018652          241 AQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIEI------------GNFDPKIATFWID--SGKL  298 (352)
Q Consensus       241 ~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~~------------~~~~~~~~~~~~~--~~~v  298 (352)
                      ... ..+..+|++.  .++.       .+.++|....       +....            ......|.+++++  +++|
T Consensus       334 ~~~~~~~~~~p~~~--~~~~-------~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~i  404 (467)
T 1zk7_A          334 GDAALDLTAMPAVV--FTDP-------QVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRL  404 (467)
T ss_dssp             CCCCCCCTTCEEEE--CSSS-------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBE
T ss_pred             CCcccCCCCCCEEE--ecCC-------ceEEEecCHHHHHhcCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEE
Confidence            432 2345566541  1111       1455664322       11110            0112457788776  6999


Q ss_pred             EEEEeecCCHHHhh-HHHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCC
Q 018652          299 KGVLVESGSPEEFQ-LLPTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  347 (352)
Q Consensus       299 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~  347 (352)
                      +|+++++..+.++. .+..+|+++.++++ .. .+.||+++|++..+++++.
T Consensus       405 lG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~  456 (467)
T 1zk7_A          405 IGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFN  456 (467)
T ss_dssp             EEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHHHHHHHHTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHh
Confidence            99999777776665 56677899999888 33 6899999999999998764

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=1.1e-37  Score=302.76  Aligned_cols=309  Identities=19%  Similarity=0.306  Sum_probs=231.6

Q ss_pred             ECCCcEEEeCCC--eE------EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChH
Q 018652           11 DIEKQTLITNSG--KL------LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYI   82 (352)
Q Consensus        11 d~~~~~V~~~~g--~~------~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~   82 (352)
                      +.+...|.+.+|  +.      +.||+||+|||++|+.+   |+...++ ..+.+..++..   ....+++++|||+|++
T Consensus       122 ~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~---~g~~~~~-~~v~~~~~~~~---~~~~~~~vvViGgG~~  194 (478)
T 1v59_A          122 DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPF---PGIEIDE-EKIVSSTGALS---LKEIPKRLTIIGGGII  194 (478)
T ss_dssp             SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCC---TTCCCCS-SSEECHHHHTT---CSSCCSEEEEECCSHH
T ss_pred             cCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCC---CCCCCCC-ceEEcHHHHHh---hhccCceEEEECCCHH
Confidence            333445666666  56      99999999999998533   3433343 12233344332   2235799999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-----CCCE
Q 018652           83 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DGST  157 (352)
Q Consensus        83 g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-----~g~~  157 (352)
                      |+|+|..|+++|.+||++++.+++++ .+++++.+.+.+.+++.||++++++.+++++..+++....+.+.     ++++
T Consensus       195 g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~  273 (478)
T 1v59_A          195 GLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQEN  273 (478)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             HHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceE
Confidence            99999999999999999999999998 58999999999999999999999999999985212333345554     4568


Q ss_pred             EEcCEEEEccCCCCCch--hhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 018652          158 IDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC  234 (352)
Q Consensus       158 i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~a  234 (352)
                      +++|.||+|+|.+|+++  ++++++++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+
T Consensus       274 ~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~a  343 (478)
T 1v59_A          274 LEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAA  343 (478)
T ss_dssp             EEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHH
T ss_pred             EECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCccCCCCEEEeeccCCCcc----------cHHHHHHHHHHH
Confidence            99999999999999998  7888899876 6779999999999999999999998542          455699999999


Q ss_pred             HHHHhcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-------------EcCCCCcEEEEEE
Q 018652          235 IKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPKIATFWI  293 (352)
Q Consensus       235 a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~~~~~~~  293 (352)
                      |+||++... .+|..+|++|....+         +..+|....       ++..             .++ ...+.++++
T Consensus       344 a~~i~~~~~~~~~~~~p~~~~~~~~---------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~  413 (478)
T 1v59_A          344 VEMLKTGHGHVNYNNIPSVMYSHPE---------VAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQD-TEGFVKILI  413 (478)
T ss_dssp             HHHHHHSCCCCCTTSCCEEECSSSE---------EEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTC-CCCEEEEEE
T ss_pred             HHHHcCCCCCCCCCCCCEEEEcCCc---------EEEEECCHHHHHHcCCCEEEEEEecccchhhhhcCC-CcEEEEEEE
Confidence            999997432 346778887765443         334444321       1111             111 223555555


Q ss_pred             E--CCEEEEEEeecCCHHHh-hHHHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCC
Q 018652          294 D--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  347 (352)
Q Consensus       294 ~--~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~  347 (352)
                      +  +++|+|+++++..+.++ ..+..+|+.+.++++ .. .+.||+++|++..++.++.
T Consensus       414 ~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~  472 (478)
T 1v59_A          414 DSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAY  472 (478)
T ss_dssp             ETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHH
T ss_pred             ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCCHHHHHHHHHHHHh
Confidence            4  69999999977776664 466777899998877 33 6889999999999987644

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-37  Score=299.34  Aligned_cols=310  Identities=21%  Similarity=0.238  Sum_probs=233.4

Q ss_pred             ceEEEECCCcEEEeCCCe--EEecCeEEEccCCCCCCCC-CCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChH
Q 018652            6 PVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP-EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYI   82 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~-~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~   82 (352)
                      +++.+++....|.+++|+  .+.||+||||||++|+. | +++|.  +.   ..+   +..+......+++++|||+|++
T Consensus       126 ~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~-p~~i~g~--~~---~~~---~~~~~~l~~~~~~vvViGgG~i  196 (479)
T 2hqm_A          126 WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIF-PENIPGF--EL---GTD---SDGFFRLEEQPKKVVVVGAGYI  196 (479)
T ss_dssp             EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECC-CTTSTTG--GG---SBC---HHHHHHCSSCCSEEEEECSSHH
T ss_pred             EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC-CCCCCCc--cc---ccc---hHHHhcccccCCeEEEECCCHH
Confidence            466666666677777776  79999999999999864 4 55553  11   122   2333333456899999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEEcC
Q 018652           83 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDAD  161 (352)
Q Consensus        83 g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D  161 (352)
                      |+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++++++++..+++....+.+.+| +++++|
T Consensus       197 g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D  275 (479)
T 2hqm_A          197 GIELAGVFHGLGSETHLVIRGETVLR-KFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVD  275 (479)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEES
T ss_pred             HHHHHHHHHHcCCceEEEEeCCcccc-ccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcC
Confidence            99999999999999999999999887 4899999999999999999999999999998654443346788899 789999


Q ss_pred             EEEEccCCCCCchh-hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          162 TIVIGIGAKPTVSP-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       162 ~vi~a~G~~p~~~~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      .||+|+|++|++.+ ++.+|++.+ +|+|.||++++|+.|+|||+|||+..+.          .+..|..||+.+|+||+
T Consensus       276 ~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~  345 (479)
T 2hqm_A          276 ELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVGKVE----------LTPVAIAAGRKLSNRLF  345 (479)
T ss_dssp             EEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGTTSSC----------CHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCccccChhhcCceECCCCCEeECCCCccCCCCEEEEEecCCCcc----------cHHHHHHHHHHHHHHhc
Confidence            99999999999977 788899876 6789999999999999999999976432          56679999999999999


Q ss_pred             cCC---C--CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEEE------------cCCCCcEEEEEE
Q 018652          240 SAQ---T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEI------------GNFDPKIATFWI  293 (352)
Q Consensus       240 ~~~---~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~------------~~~~~~~~~~~~  293 (352)
                      +..   .  .++..+|+......+         +..+|....+         ....            ......|.++.+
T Consensus       346 ~~~~~~~~~~~~~~~p~~~~~~~~---------~~~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~  416 (479)
T 2hqm_A          346 GPEKFRNDKLDYENVPSVIFSHPE---------AGSIGISEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVC  416 (479)
T ss_dssp             SCGGGTTCCCCCTTCCEEECCSSC---------EEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEE
T ss_pred             CCCccCcccCCCCCCCeEEECCCC---------eEEEeCCHHHHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEE
Confidence            643   2  234456653211111         3344432210         1110            011234667766


Q ss_pred             E--CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHHh
Q 018652          294 D--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARA  344 (352)
Q Consensus       294 ~--~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~  344 (352)
                      +  +++|+|+++++..+.++... ..+|+.+.++++ .. ++.||+++|++..++.
T Consensus       417 ~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  472 (479)
T 2hqm_A          417 AGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEELVTMRG  472 (479)
T ss_dssp             ETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC-
T ss_pred             ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHH
Confidence            5  58999999987778887654 456789998888 33 7899999999876554

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=6.1e-36  Score=297.47  Aligned_cols=313  Identities=21%  Similarity=0.327  Sum_probs=246.9

Q ss_pred             ccCCceEEEECCCcEEEeC---CCe--EEecCeEEEccCCCCCCCCCCCCC-CCCcEEEecCHHHHHHHHHhh--cCCCe
Q 018652            2 IYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADADALISSL--EKAKK   73 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~---~g~--~~~yd~lViAtG~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~~--~~~~~   73 (352)
                      +++++|++++++++.+.+.   +|+  .+.||+||||||++|+ .|.++|. +.+++++.++..++..+...+  ..+++
T Consensus       111 ~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~  189 (588)
T 3ics_A          111 RVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPI-VPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRH  189 (588)
T ss_dssp             ECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSE
T ss_pred             EECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCC-CCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCe
Confidence            4688999999999988874   465  6899999999999986 4567776 678899999998888776654  36899


Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC
Q 018652           74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  153 (352)
Q Consensus        74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~  153 (352)
                      ++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|++++...+    .+.+.
T Consensus       190 vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~----~v~~~  264 (588)
T 3ics_A          190 ATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALEENGA----VVRLK  264 (588)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT----EEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC----EEEEC
Confidence            999999999999999999999999999999999886 8999999999999999999999999999985322    47788


Q ss_pred             CCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHH
Q 018652          154 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  232 (352)
Q Consensus       154 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~  232 (352)
                      +|+++++|.||+|+|++|++++++.+|++.+ +|+|.||++++|+.|+|||+|||+..+....|.......+..|..||+
T Consensus       265 ~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  344 (588)
T 3ics_A          265 SGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGR  344 (588)
T ss_dssp             TSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHH
T ss_pred             CCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHH
Confidence            9999999999999999999999999999875 688999999999999999999999876655565545568888999999


Q ss_pred             HHHHHHhcCCCCCC-CCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEE---EcC--C----CCcEEEEEE
Q 018652          233 HCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE---IGN--F----DPKIATFWI  293 (352)
Q Consensus       233 ~aa~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~---~~~--~----~~~~~~~~~  293 (352)
                      .+|+||++.....+ ..+|..+...++..       +..+|....+         ...   ...  .    ..-+.++.+
T Consensus       345 ~aa~~i~g~~~~~~~~~~~~~~~~~~~~~-------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i~  417 (588)
T 3ics_A          345 MLADIIHGHTDSLYKGTLGTSVAKVFDLT-------VATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKLIF  417 (588)
T ss_dssp             HHHHHHTTCCSSCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEE
T ss_pred             HHHHHhcCCCccccCCcccceEEEECCeE-------EEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEEEEE
Confidence            99999996233333 33555544444321       4455544311         111   110  0    123666666


Q ss_pred             E--CCEEEEEEeecCC-HHHhh-HHHHHHhCCCCCChh
Q 018652          294 D--SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVDKA  327 (352)
Q Consensus       294 ~--~~~v~g~~~~~~~-~~~~~-~~~~~~~~~~~~~~~  327 (352)
                      +  +++|+|+++++.+ +.++. .+..+|+.+.++++.
T Consensus       418 ~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l  455 (588)
T 3ics_A          418 NKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDL  455 (588)
T ss_dssp             CTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTG
T ss_pred             ECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHh
Confidence            4  6899999987653 66665 455667999988883

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=2.2e-37  Score=300.70  Aligned_cols=293  Identities=18%  Similarity=0.259  Sum_probs=223.1

Q ss_pred             eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652           23 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        23 ~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      .+++||+||+|||++|+.++.++. + ..+.   +..+.   ......+++++|||||++|+|+|..|+++|.+||++++
T Consensus       145 ~~i~ad~lViAtGs~p~~~~~i~~-~-~~v~---~~~~~---~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~  216 (482)
T 1ojt_A          145 KIVAFKNCIIAAGSRVTKLPFIPE-D-PRII---DSSGA---LALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEM  216 (482)
T ss_dssp             EEEEEEEEEECCCEEECCCSSCCC-C-TTEE---CHHHH---TTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             eEEEcCEEEECCCCCCCCCCCCCc-c-CcEE---cHHHH---hcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEE
Confidence            679999999999999875442332 1 2332   33333   22233589999999999999999999999999999999


Q ss_pred             CCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC----CCEEEcCEEEEccCCCCCchh--h
Q 018652          103 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----GSTIDADTIVIGIGAKPTVSP--F  176 (352)
Q Consensus       103 ~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~----g~~i~~D~vi~a~G~~p~~~~--~  176 (352)
                      .+++++ .+++++.+.+.+.+++.||++++++.+.+++.++++  ..+.+.+    |+++++|.||+|+|++||+++  +
T Consensus       217 ~~~~l~-~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~  293 (482)
T 1ojt_A          217 MDGLMQ-GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG--VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISA  293 (482)
T ss_dssp             SSSSST-TSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTE--EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTG
T ss_pred             CCcccc-ccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCe--EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCCh
Confidence            999998 489999999999999999999999999999864322  3566666    778999999999999999987  6


Q ss_pred             hhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCeee
Q 018652          177 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFY  253 (352)
Q Consensus       177 ~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~--~~~~p~~~  253 (352)
                      ++++++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|+||++. ..+  +..+|++ 
T Consensus       294 ~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~-  361 (482)
T 1ojt_A          294 EKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGH-KAYFDARVIPGV-  361 (482)
T ss_dssp             GGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTC-CCCCCCCCCCEE-
T ss_pred             hhcCceeCCCCCEeeCCCcccCCCCEEEEEcccCCCc----------cHHHHHHHHHHHHHHHcCC-CccCCCCCCCEE-
Confidence            88898876 4779999999999999999999997532          4567999999999999964 333  4445654 


Q ss_pred             eeccCcCCCCcceeeEEeecCcc-------cEEE-------------EcCCCCcEEEEEE--ECCEEEEEEeecCCHHHh
Q 018652          254 SRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPKIATFWI--DSGKLKGVLVESGSPEEF  311 (352)
Q Consensus       254 ~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~~~~~~~--~~~~v~g~~~~~~~~~~~  311 (352)
                       ..++.       .+..+|....       ++..             .++ ...|.++++  ++++|+|+++++..+.++
T Consensus       362 -~~~~~-------~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~ilG~~~~g~~a~e~  432 (482)
T 1ojt_A          362 -AYTSP-------EVAWVGETELSAKASARKITKANFPWAASGRAIANGC-DKPFTKLIFDAETGRIIGGGIVGPNGGDM  432 (482)
T ss_dssp             -ECSSS-------CEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTC-CSCEEEEEEETTTCBEEEEEEESTTHHHH
T ss_pred             -EEcCC-------CeEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCC-CcEEEEEEEECCCCEEEEEEEECCCHHHH
Confidence             11111       1444554321       1111             111 234778877  469999999987777776


Q ss_pred             h-HHHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCC
Q 018652          312 Q-LLPTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  347 (352)
Q Consensus       312 ~-~~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~  347 (352)
                      . .+..+|+.+.++++ .. ++.||+++|++..|++.+.
T Consensus       433 i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~~~~  471 (482)
T 1ojt_A          433 IGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVAL  471 (482)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHh
Confidence            5 44566799999888 23 7999999999999987644

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=1.6e-36  Score=293.27  Aligned_cols=307  Identities=21%  Similarity=0.300  Sum_probs=230.4

Q ss_pred             eEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc-CCCeEEEECCChHHHH
Q 018652            7 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-KAKKVVVVGGGYIGME   85 (352)
Q Consensus         7 V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~-~~~~vvVvGgG~~g~e   85 (352)
                      +..+++  ++|.+. |++++||+||||||++|+.+|.+++.  ..++   +..+...   ... .+++++|||+|++|+|
T Consensus       115 ~~~~~~--~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~--~~v~---~~~~~~~---l~~~~~~~vvViGgG~~g~e  183 (464)
T 2eq6_A          115 ARLVGP--KEVEVG-GERYGAKSLILATGSEPLELKGFPFG--EDVW---DSTRALK---VEEGLPKRLLVIGGGAVGLE  183 (464)
T ss_dssp             EEEEET--TEEEET-TEEEEEEEEEECCCEEECCBTTBCCS--SSEE---CHHHHTC---GGGCCCSEEEEECCSHHHHH
T ss_pred             EEEccC--CEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCC--CcEE---cHHHHHh---hhhhcCCEEEEECCCHHHHH
Confidence            344553  577776 77899999999999998754324441  2332   3343332   222 5799999999999999


Q ss_pred             HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-C--CC--EEEc
Q 018652           86 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-D--GS--TIDA  160 (352)
Q Consensus        86 ~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~--g~--~i~~  160 (352)
                      +|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++..+ +. ..+.+. +  |+  ++++
T Consensus       184 ~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~~~~g~~~~i~~  260 (464)
T 2eq6_A          184 LGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRVRTKTKAVGYEKKK-DG-LHVRLEPAEGGEGEEVVV  260 (464)
T ss_dssp             HHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TE-EEEEEEETTCCSCEEEEE
T ss_pred             HHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeC-CE-EEEEEeecCCCceeEEEc
Confidence            99999999999999999999887 5899999999999999999999999999998543 22 245554 5  76  8999


Q ss_pred             CEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652          161 DTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  237 (352)
Q Consensus       161 D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~  237 (352)
                      |.||+|+|.+|++++  ++.+++..+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|+|
T Consensus       261 D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~----------l~~~A~~~g~~aa~~  330 (464)
T 2eq6_A          261 DKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPL----------LAHKAMREGLIAAEN  330 (464)
T ss_dssp             SEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHH
T ss_pred             CEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHH
Confidence            999999999999886  577888875 6779999999999999999999997532          455699999999999


Q ss_pred             HhcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-------------EcCCCCcEEEEEEE--
Q 018652          238 LLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPKIATFWID--  294 (352)
Q Consensus       238 i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~~~~~~~~--  294 (352)
                      |++... ..+. +|++   .|...      .+..+|....       +...             .++ ...|.+++++  
T Consensus       331 i~g~~~~~~~~-~p~~---~~~~~------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~k~~~~~~  399 (464)
T 2eq6_A          331 AAGKDSAFDYQ-VPSV---VYTSP------EWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGG-AEGMVKVVGDEE  399 (464)
T ss_dssp             HTTCCCCCCCC-CCEE---ECSSS------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTSC-CCCEEEEEEETT
T ss_pred             hcCCCcccCCC-CCeE---EECCC------CEEEEeCCHHHHHhcCCCEEEEEEEcCcchhhhhcCC-CcEEEEEEEECC
Confidence            996432 1344 6654   12111      1444554321       1111             111 2346777775  


Q ss_pred             CCEEEEEEeecCCHHHhh-HHHHHHhCCCCCCh--hhhcCCCchHHHHHHHHhcCCc
Q 018652          295 SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK--AKLQQASSVEEALEIARAALPV  348 (352)
Q Consensus       295 ~~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~~~~~~~  348 (352)
                      +++|+|+++++..+.++. .+..+|+.+.++++  ..++.||+++|++..+++++..
T Consensus       400 ~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~  456 (464)
T 2eq6_A          400 TDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAEAFHK  456 (464)
T ss_dssp             TCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHHHHHHHHTT
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHHhc
Confidence            699999999888877764 55667899999888  3378999999999999876554

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=8.3e-37  Score=297.40  Aligned_cols=307  Identities=20%  Similarity=0.281  Sum_probs=232.0

Q ss_pred             CceEEEECCCcEEEeC---C-----CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652            5 DPVTSIDIEKQTLITN---S-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV   76 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~---~-----g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvV   76 (352)
                      .+++.++.  ++|.++   +     ++.+.||+||||||++|+. |.++|.  +.+.+      +..+......+++++|
T Consensus       128 g~~~~i~~--~~v~v~~~~~~~~~~~~~~~~d~lViATGs~p~~-p~i~G~--~~~~~------~~~~~~~~~~~~~vvV  196 (495)
T 2wpf_A          128 GWGSLESK--NVVVVRETADPKSAVKERLQADHILLATGSWPQM-PAIPGI--EHCIS------SNEAFYLPEPPRRVLT  196 (495)
T ss_dssp             SEEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCCTTG--GGCEE------HHHHTTCSSCCSEEEE
T ss_pred             eEEEEeeC--CEEEEeecCCccCCCCeEEEcCEEEEeCCCCcCC-CCCCCc--ccccc------HHHHHhhhhcCCeEEE
Confidence            34566654  567765   4     6789999999999999874 545553  22322      2233333345789999


Q ss_pred             ECCChHHHHHHHHHHhC---CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC
Q 018652           77 VGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  153 (352)
Q Consensus        77 vGgG~~g~e~A~~l~~~---g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~  153 (352)
                      ||+|++|+|+|..|+++   |.+||++++.+++++ .+++++.+.+.+.+++.||++++++.|++++..+++. ..+.+.
T Consensus       197 iGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~  274 (495)
T 2wpf_A          197 VGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-GFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFE  274 (495)
T ss_dssp             ECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC-EEEEET
T ss_pred             ECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCce-EEEEEC
Confidence            99999999999999999   999999999999887 4899999999999999999999999999998653333 467888


Q ss_pred             CCCEEEcCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHH
Q 018652          154 DGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  230 (352)
Q Consensus       154 ~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~  230 (352)
                      +|+++++|.||+|+|++|++++  +++++++.+ +|+|.||+++||+.|+|||+|||+..+          ..+..|..|
T Consensus       275 ~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~  344 (495)
T 2wpf_A          275 SGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL----------MLTPVAINE  344 (495)
T ss_dssp             TSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHH
T ss_pred             CCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHH
Confidence            9989999999999999999974  678888876 678999999999999999999999642          266679999


Q ss_pred             HHHHHHHHhcCCC--CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------EEE-E-----------cCCCCcE-
Q 018652          231 AQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I-----------GNFDPKI-  288 (352)
Q Consensus       231 g~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-~-----------~~~~~~~-  288 (352)
                      |+.+|.||++...  ..|..+|+.   .|...      .+..+|....+       ..+ .           +.....| 
T Consensus       345 g~~aa~~i~g~~~~~~~~~~~p~~---~~~~~------~~a~vGl~e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  415 (495)
T 2wpf_A          345 GAALVDTVFGNKPRKTDHTRVASA---VFSIP------PIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFV  415 (495)
T ss_dssp             HHHHHHHHHSSCCCCCCCSSCEEE---ECCSS------CEEEEECCHHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEE
T ss_pred             HHHHHHHhcCCCCCcCCCCCCCEE---EECCC------CeEEEeCCHHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEE
Confidence            9999999996433  235555543   23211      14556644221       111 0           1112346 


Q ss_pred             EEEEEE--CCEEEEEEeecCCHHHhhH-HHHHHhCCCCCCh-hh-hcCCCchHHHHHHHH
Q 018652          289 ATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIAR  343 (352)
Q Consensus       289 ~~~~~~--~~~v~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~  343 (352)
                      .++.++  +++|+|+++++..+.++.. +..+|+.+.++++ .. ++.||+++|++..++
T Consensus       416 ~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  475 (495)
T 2wpf_A          416 AKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMR  475 (495)
T ss_dssp             EEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCC
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence            777775  6899999998888877764 4556789998888 33 789999999987654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=5.7e-37  Score=295.32  Aligned_cols=304  Identities=20%  Similarity=0.238  Sum_probs=228.7

Q ss_pred             CceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHH
Q 018652            5 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGM   84 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~   84 (352)
                      .+++.+++  +.|.+ +|+.+.||+||||||++|.. |+++|.  +.   +.+..+   +......+++++|||+|++|+
T Consensus       113 g~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~-p~i~g~--~~---~~~~~~---~~~~~~~~~~vvViGgG~~g~  180 (450)
T 1ges_A          113 GFARFVDA--KTLEV-NGETITADHILIATGGRPSH-PDIPGV--EY---GIDSDG---FFALPALPERVAVVGAGYIGV  180 (450)
T ss_dssp             SCCEEEET--TEEEE-TTEEEEEEEEEECCCEEECC-CCSTTG--GG---SBCHHH---HHHCSSCCSEEEEECCSHHHH
T ss_pred             eEEEEecC--CEEEE-CCEEEEeCEEEECCCCCCCC-CCCCCc--cc---eecHHH---hhhhhhcCCeEEEECCCHHHH
Confidence            34555664  56777 77889999999999999864 545543  11   223333   333334679999999999999


Q ss_pred             HHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652           85 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  164 (352)
Q Consensus        85 e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  164 (352)
                      |+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++..+++. ..+.+.+|+++++|.||
T Consensus       181 e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv  258 (450)
T 1ges_A          181 ELGGVINGLGAKTHLFEMFDAPLP-SFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLI  258 (450)
T ss_dssp             HHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEE
T ss_pred             HHHHHHHhcCCEEEEEEeCCchhh-hhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEE
Confidence            999999999999999999998887 4899999999999999999999999999998653332 36778899899999999


Q ss_pred             EccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          165 IGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       165 ~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      +|+|.+|++++  ++.+|++.+ +|+|.||++++|+.|+|||+|||+..+.          .+..|..||+.+|+||++.
T Consensus       259 ~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~  328 (450)
T 1ges_A          259 WAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVE----------LTPVAVAAGRRLSERLFNN  328 (450)
T ss_dssp             ECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCC----------CHHHHHHHHHHHHHHHHTT
T ss_pred             ECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccCCCCc----------cHHHHHHHHHHHHHHHcCC
Confidence            99999999873  678888876 6779999999999999999999986432          5667999999999999964


Q ss_pred             CC---CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc---------cEEEE------------cCCCCcEEEEEEE--C
Q 018652          242 QT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIEI------------GNFDPKIATFWID--S  295 (352)
Q Consensus       242 ~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---------~~~~~------------~~~~~~~~~~~~~--~  295 (352)
                      ..   ..|..+|+......+         +..+|....         .+...            ......|.++.++  +
T Consensus       329 ~~~~~~~~~~~p~~~~~~~~---------~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  399 (450)
T 1ges_A          329 KPDEHLDYSNIPTVVFSHPP---------IGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSE  399 (450)
T ss_dssp             CTTCCCCCSSCCEEECCSSC---------EEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTT
T ss_pred             CCcccCCCCCCCeEEECCCc---------eEEEeCCHHHHHhcCCCCcEEEEEEECchhhHHHhcCCCcEEEEEEEECCC
Confidence            32   245566764221111         344443211         11110            1112236666665  6


Q ss_pred             CEEEEEEeecCCHHHhhHHH-HHHhCCCCCCh-hh-hcCCCchHHHHHH
Q 018652          296 GKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK-LQQASSVEEALEI  341 (352)
Q Consensus       296 ~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~e~~~~  341 (352)
                      ++|+|+++++..+.++.... .+|+.+.++++ .. ++.||+++|++..
T Consensus       400 ~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  448 (450)
T 1ges_A          400 EKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVT  448 (450)
T ss_dssp             TEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred             CEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHHHh
Confidence            89999999887788876554 45789998888 33 7899999998753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=9.3e-37  Score=296.78  Aligned_cols=307  Identities=19%  Similarity=0.248  Sum_probs=232.6

Q ss_pred             CceEEEECCCcEEEe-----CCC---eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652            5 DPVTSIDIEKQTLIT-----NSG---KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV   76 (352)
Q Consensus         5 ~~V~~id~~~~~V~~-----~~g---~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvV   76 (352)
                      .+++.+++.  ++.+     ++|   +.+.||+||||||++|+. |+++|.  +.   +.+..   .+......+++++|
T Consensus       124 g~~~~i~~~--~v~v~~~~~~~g~~~~~~~~d~lviAtGs~p~~-p~i~g~--~~---~~~~~---~~~~~~~~~~~vvV  192 (490)
T 1fec_A          124 GFGALQDNH--TVLVRESADPNSAVLETLDTEYILLATGSWPQH-LGIEGD--DL---CITSN---EAFYLDEAPKRALC  192 (490)
T ss_dssp             SEEEEEETT--EEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCSBTG--GG---CBCHH---HHTTCSSCCSEEEE
T ss_pred             eEEEEeeCC--EEEEEeeccCCCCceEEEEcCEEEEeCCCCCCC-CCCCCc--cc---eecHH---HHhhhhhcCCeEEE
Confidence            356677753  5555     366   689999999999999864 545553  22   22333   33333345789999


Q ss_pred             ECCChHHHHHHHHHHhC---CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC
Q 018652           77 VGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  153 (352)
Q Consensus        77 vGgG~~g~e~A~~l~~~---g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~  153 (352)
                      ||+|++|+|+|..|+++   |.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++.++++. ..+.+.
T Consensus       193 iGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~  270 (490)
T 1fec_A          193 VGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-GFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVFE  270 (490)
T ss_dssp             ECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEET
T ss_pred             ECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE-EEEEEC
Confidence            99999999999999999   999999999999887 4899999999999999999999999999998653333 367788


Q ss_pred             CCCEEEcCEEEEccCCCCCch-h-hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHH
Q 018652          154 DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  230 (352)
Q Consensus       154 ~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~  230 (352)
                      +|+++++|.||+|+|.+|+++ + ++.+|++.+ +|+|.||+++||+.|+|||+|||+..+          ..+..|..|
T Consensus       271 ~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~  340 (490)
T 1fec_A          271 SGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLTPVAINE  340 (490)
T ss_dssp             TSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHH
T ss_pred             CCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHH
Confidence            998999999999999999987 4 688898876 678999999999999999999999632          266779999


Q ss_pred             HHHHHHHHhcCCC--CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------EEE-E-----------cCCCCcEE
Q 018652          231 AQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I-----------GNFDPKIA  289 (352)
Q Consensus       231 g~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-~-----------~~~~~~~~  289 (352)
                      |+.+|.||++...  ..+..+|+.   .|...      .+..+|....+       ... .           ......|.
T Consensus       341 g~~aa~~i~g~~~~~~~~~~~p~~---~~~~~------~~a~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (490)
T 1fec_A          341 GAAFVDTVFANKPRATDHTKVACA---VFSIP------PMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFM  411 (490)
T ss_dssp             HHHHHHHHHSSCCCCCCCSSCCEE---ECCSS------CEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEE
T ss_pred             HHHHHHHhcCCCCCcCCCCCccEE---EECCC------CeEEEeCCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEE
Confidence            9999999996433  235556653   22211      14556654321       111 0           11123467


Q ss_pred             -EEEEE--CCEEEEEEeecCCHHHhh-HHHHHHhCCCCCCh-hh-hcCCCchHHHHHHHH
Q 018652          290 -TFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVDK-AK-LQQASSVEEALEIAR  343 (352)
Q Consensus       290 -~~~~~--~~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~  343 (352)
                       ++.++  +++|+|+++++..+.++. .+..+|+.+.++++ .. ++.||+++|++..++
T Consensus       412 ~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  471 (490)
T 1fec_A          412 VRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR  471 (490)
T ss_dssp             EEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHHH
Confidence             77776  689999999888887766 44556799998888 33 789999999987755

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.1e-36  Score=296.94  Aligned_cols=301  Identities=18%  Similarity=0.226  Sum_probs=219.2

Q ss_pred             CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 018652           22 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  101 (352)
Q Consensus        22 g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~  101 (352)
                      +..+.||+||||||++|.. |+++|.  +.+.+   ..   .+.... .+++++|||+|++|+|+|..|+++|.+||+++
T Consensus       137 ~~~~~~d~lViAtGs~p~~-p~i~G~--~~~~~---~~---~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~  206 (500)
T 1onf_A          137 EEILEGRNILIAVGNKPVF-PPVKGI--ENTIS---SD---EFFNIK-ESKKIGIVGSGYIAVELINVIKRLGIDSYIFA  206 (500)
T ss_dssp             ----CBSSEEECCCCCBCC-CSCTTG--GGCEE---HH---HHTTCC-CCSEEEEECCSHHHHHHHHHHHTTTCEEEEEC
T ss_pred             ceEEEeCEEEECCCCCCCC-CCCCCC--CcccC---HH---HHhccC-CCCeEEEECChHHHHHHHHHHHHcCCeEEEEe
Confidence            6679999999999999864 555553  22222   22   222222 28999999999999999999999999999999


Q ss_pred             cCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCE-EEcCEEEEccCCCCCch-h-hhh
Q 018652          102 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVS-P-FER  178 (352)
Q Consensus       102 ~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~-~-~~~  178 (352)
                      +.+++++ .+++++.+.+.+.+++.||++++++.+++++..+++. ..+.+.+|++ +++|.||+|+|++|+++ + +++
T Consensus       207 ~~~~~l~-~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~  284 (500)
T 1onf_A          207 RGNRILR-KFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEK  284 (500)
T ss_dssp             SSSSSCT-TSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTT
T ss_pred             cCCccCc-ccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchh
Confidence            9999987 5899999999999999999999999999998654343 3677889988 99999999999999986 4 678


Q ss_pred             cCCcccCCcEEeCCCCCCCCCCEEEeccccccCCcc-----------------------CC-cccccccHHHHHHHHHHH
Q 018652          179 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM-----------------------YD-RTARVEHVDHARQSAQHC  234 (352)
Q Consensus       179 ~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~-----------------------~~-~~~~~~~~~~A~~~g~~a  234 (352)
                      ++++.++|+|.||+++||+.|+|||+|||+..+...                       .+ ...+...+..|.+||+.+
T Consensus       285 ~g~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~a  364 (500)
T 1onf_A          285 LNVETNNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLL  364 (500)
T ss_dssp             TTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHH
T ss_pred             cCccccCCEEEECCCcccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHH
Confidence            888886678999999999999999999999532100                       00 002345788899999999


Q ss_pred             HHHHhcCCCC--CCCCCCeeeeeccCcCCCCcceeeEEeecCcc---------cEEE----------------EcCCCCc
Q 018652          235 IKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIE----------------IGNFDPK  287 (352)
Q Consensus       235 a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---------~~~~----------------~~~~~~~  287 (352)
                      |+||++....  .|..+|+.   .|...      .+..+|....         .+..                .......
T Consensus       365 a~~i~g~~~~~~~~~~~p~~---~~~~~------~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (500)
T 1onf_A          365 ADRLFLKKTRKTNYKLIPTV---IFSHP------PIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKT  435 (500)
T ss_dssp             HHHHHSCTTCCCCCSSCCEE---ECCSS------CEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCE
T ss_pred             HHHHhCCCCccCCCCCCCeE---EEcCc------ceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCce
Confidence            9999964332  35556653   22110      0333443211         1111                0111234


Q ss_pred             EEEEEEE--CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHH
Q 018652          288 IATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIAR  343 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~  343 (352)
                      |.++.++  +++|+|+++++..+.++... ..+|+.+.++++ .. ++.||+++|++..++
T Consensus       436 ~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  496 (500)
T 1onf_A          436 YLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ  496 (500)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence            6677664  68999999987778777655 455789998888 33 789999999988654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=4.8e-36  Score=290.13  Aligned_cols=315  Identities=18%  Similarity=0.234  Sum_probs=237.7

Q ss_pred             CCceEEEECCCcEEEeCCCeE--EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHH-HhhcCCCeEEEECCC
Q 018652            4 QDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI-SSLEKAKKVVVVGGG   80 (352)
Q Consensus         4 ~~~V~~id~~~~~V~~~~g~~--~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~~~~vvVvGgG   80 (352)
                      ..++..+|++...|.+++|+.  +.||+||||||++|+. |+++|.+  +   +.+..+...+. .....+++++|||+|
T Consensus       108 ~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~-p~i~G~~--~---~~t~~~~~~~~~~l~~~~~~vvViGgG  181 (466)
T 3l8k_A          108 KGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAK-LRLPGVE--Y---CLTSDDIFGYKTSFRKLPQDMVIIGAG  181 (466)
T ss_dssp             SEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-CCCTTGG--G---SBCHHHHHSTTCSCCSCCSEEEEECCS
T ss_pred             EeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccC-CCCCCcc--c---eEeHHHHHHHHHHHhhCCCeEEEECCC
Confidence            457888998888898888988  9999999999999864 5555533  3   33444443222 223357899999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC--CCC--
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--  156 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--~g~--  156 (352)
                      ++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.++   |++++++.+++++..+++.+ .+.+.  +|+  
T Consensus       182 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v-~v~~~~~~G~~~  257 (466)
T 3l8k_A          182 YIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVKKIKDDEY-EVIYSTKDGSKK  257 (466)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEEEEETTEE-EEEECCTTSCCE
T ss_pred             HHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEEEcCCCcE-EEEEEecCCceE
Confidence            99999999999999999999999999986449999999988876   99999999999986431333 46666  676  


Q ss_pred             EEEcCEEEEccCCCCCchh-hhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHH
Q 018652          157 TIDADTIVIGIGAKPTVSP-FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI  235 (352)
Q Consensus       157 ~i~~D~vi~a~G~~p~~~~-~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa  235 (352)
                      ++++|.|++|+|++|++.+ ++++|++.+.++|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|
T Consensus       258 ~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~Gi~vd~~~~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa  327 (466)
T 3l8k_A          258 SIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDANGLAP----------YYHAAVRMSIAAA  327 (466)
T ss_dssp             EEEESCEEECCCEEECCCTTTGGGTCCBCSSSBCCCTTCBCSSTTEEECGGGTCSCC----------SHHHHHHHHHHHH
T ss_pred             EEEcCEEEECcCCCcccccchhhcCceeCCCCEeECCCccCCCCCEEEEEecCCCCc----------cHhHHHHHHHHHH
Confidence            7999999999999999885 7888998763339999999999999999999997632          5667999999999


Q ss_pred             HHHhcC--CC--CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------EE--EE--c--------CCCCcEEEEE
Q 018652          236 KALLSA--QT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI--EI--G--------NFDPKIATFW  292 (352)
Q Consensus       236 ~~i~~~--~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~--~~--~--------~~~~~~~~~~  292 (352)
                      +||++.  ..  ..+..+|+.   .|...      .+..+|....+       ..  ..  .        .....+.++.
T Consensus       328 ~~i~~~~~~~~~~~~~~~p~~---~~~~~------~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i  398 (466)
T 3l8k_A          328 NNIMANGMPVDYVDVKSIPVT---IYTIP------SLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQIYGQKEGVLKLI  398 (466)
T ss_dssp             HHHHTTTSCCCCCCSTTSCEE---ECSSS------CEEEEECCHHHHHHHTCCEEEEEEEGGGSHHHHHHTCCCCEEEEE
T ss_pred             HHHhCCCCCccccCCCCCcEE---EECCC------CeEEecCCHHHHHhCCCCEEEEEEEcccChhheecCCCeEEEEEE
Confidence            999965  32  234555653   23211      14555554321       11  10  0        0123466766


Q ss_pred             EE--CCEEEEEEeecCCHHHhhH-HHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCC
Q 018652          293 ID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAALP  347 (352)
Q Consensus       293 ~~--~~~v~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~  347 (352)
                      ++  +++|+|+++++.++.++.. +..+|+.+.++++ .. ++.||+++|++..+++++.
T Consensus       399 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~  458 (466)
T 3l8k_A          399 FERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYTARKVI  458 (466)
T ss_dssp             EETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHHHHHHHHHH
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHHHHHHHHHH
Confidence            65  4899999998888887764 4556799999988 33 7999999999999987653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=1.2e-35  Score=288.06  Aligned_cols=315  Identities=18%  Similarity=0.253  Sum_probs=236.6

Q ss_pred             CceEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChH
Q 018652            5 DPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYI   82 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~   82 (352)
                      .++..+++....|.+.+|  ..+.||+||||||++|..+|. ++.+.+.+++      +..+......+++++|||+|++
T Consensus       119 g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~-~~~~~~~v~~------~~~~~~~~~~~~~v~ViGgG~~  191 (476)
T 3lad_A          119 GHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPP-APVDQDVIVD------STGALDFQNVPGKLGVIGAGVI  191 (476)
T ss_dssp             SEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTT-SCCCSSSEEE------HHHHTSCSSCCSEEEEECCSHH
T ss_pred             eEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCC-CCCCcccEEe------chhhhccccCCCeEEEECCCHH
Confidence            445556777778887777  579999999999999864443 3333344443      2333333456899999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC---CEEE
Q 018652           83 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STID  159 (352)
Q Consensus        83 g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~  159 (352)
                      |+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++..+++.  .+.+.++   ++++
T Consensus       192 g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~--~v~~~~~~g~~~~~  268 (476)
T 3lad_A          192 GLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQV--TVKFVDAEGEKSQA  268 (476)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCE--EEEEESSSEEEEEE
T ss_pred             HHHHHHHHHHcCCcEEEEecCCCcCc-ccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEE--EEEEEeCCCcEEEE
Confidence            99999999999999999999999987 5899999999999999999999999999998653332  4555543   5799


Q ss_pred             cCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHH
Q 018652          160 ADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK  236 (352)
Q Consensus       160 ~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~  236 (352)
                      +|.||+|+|++|++++  ++.++++.+ +|+|.||++++|+.|+|||+|||+..+.          .+..|..+|+.+|+
T Consensus       269 ~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~  338 (476)
T 3lad_A          269 FDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAE  338 (476)
T ss_dssp             ESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHH
T ss_pred             CCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEEccCCCcc----------cHHHHHHHHHHHHH
Confidence            9999999999999874  677888876 5789999999999999999999996432          45669999999999


Q ss_pred             HHhcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc-------EE--EE-----------cCCCCcEEEEEEE-
Q 018652          237 ALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI--EI-----------GNFDPKIATFWID-  294 (352)
Q Consensus       237 ~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~--~~-----------~~~~~~~~~~~~~-  294 (352)
                      +|++... ..+..+|+..   |..+      .+..+|....+       ..  ..           +. ...+.++.++ 
T Consensus       339 ~i~g~~~~~~~~~~p~~~---~~~~------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~  408 (476)
T 3lad_A          339 RIAGHKAQMNYDLIPAVI---YTHP------EIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAAND-TAGFVKVIADA  408 (476)
T ss_dssp             HHHHCCCCCCTTCCCEEE---CSSS------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTC-CCCEEEEEEET
T ss_pred             HhcCCCcccCCCCCCEEE---ECcC------CEEEeeCCHHHHHhcCCCEEEEEEeccccchheecCC-CcEEEEEEEEC
Confidence            9996432 2355566542   3211      13445544321       11  10           11 1235666554 


Q ss_pred             -CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCCcc
Q 018652          295 -SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPVE  349 (352)
Q Consensus       295 -~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~~~  349 (352)
                       +++|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|++..|++.+..+
T Consensus       409 ~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~  467 (476)
T 3lad_A          409 KTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGH  467 (476)
T ss_dssp             TTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHHHHhcc
Confidence             58999999988888887754 4567999998883 3 689999999999999876654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=3.1e-36  Score=291.12  Aligned_cols=304  Identities=19%  Similarity=0.273  Sum_probs=228.7

Q ss_pred             ceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHH
Q 018652            6 PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGME   85 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e   85 (352)
                      ++..+++  +.|.+ +|+++.||+||||||++|+. |+++|.  +.   +.+..+   +......+++++|||+|++|+|
T Consensus       113 ~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~-p~i~G~--~~---~~~~~~---~~~~~~~~~~vvVvGgG~~g~e  180 (463)
T 2r9z_A          113 HARFVDA--HTIEV-EGQRLSADHIVIATGGRPIV-PRLPGA--EL---GITSDG---FFALQQQPKRVAIIGAGYIGIE  180 (463)
T ss_dssp             CEEEEET--TEEEE-TTEEEEEEEEEECCCEEECC-CSCTTG--GG---SBCHHH---HHHCSSCCSEEEEECCSHHHHH
T ss_pred             EEEEccC--CEEEE-CCEEEEcCEEEECCCCCCCC-CCCCCc--cc---eecHHH---HhhhhccCCEEEEECCCHHHHH
Confidence            4555654  56777 77789999999999999864 545543  11   223333   3333345789999999999999


Q ss_pred             HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEE
Q 018652           86 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIV  164 (352)
Q Consensus        86 ~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi  164 (352)
                      +|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++..+++  ..+.+.+|+ ++++|.||
T Consensus       181 ~A~~l~~~G~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv  257 (463)
T 2r9z_A          181 LAGLLRSFGSEVTVVALEDRLLF-QFDPLLSATLAENMHAQGIETHLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVI  257 (463)
T ss_dssp             HHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTE--EEEEETTCCEEEEESEEE
T ss_pred             HHHHHHhcCCEEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEE
Confidence            99999999999999999998887 489999999999999999999999999999864333  467888998 89999999


Q ss_pred             EccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          165 IGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       165 ~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      +|+|.+|++++  +++++++.+ +|+|.||++++|+.|+|||+|||+..+.          .+..|..||+.+|.||++.
T Consensus       258 ~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~  327 (463)
T 2r9z_A          258 WAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITGRDQ----------LTPVAIAAGRRLAERLFDG  327 (463)
T ss_dssp             ECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGGTSCC----------CHHHHHHHHHHHHHHHHSC
T ss_pred             ECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence            99999999874  577888876 6789999999999999999999986431          5667999999999999964


Q ss_pred             CC---CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc--------cEEEE------------cCCCCcEEEEEEE--CC
Q 018652          242 QT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ETIEI------------GNFDPKIATFWID--SG  296 (352)
Q Consensus       242 ~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~~~~------------~~~~~~~~~~~~~--~~  296 (352)
                      ..   ..|..+|++.....+         +..+|....        .+...            ......|.++.++  ++
T Consensus       328 ~~~~~~~~~~~p~~~~~~~~---------~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~  398 (463)
T 2r9z_A          328 QSERKLDYDNIPTVVFAHPP---------LSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQ  398 (463)
T ss_dssp             CTTCCCCCSSCCEEECCSSC---------EEEEECCHHHHHHHHCSCEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTT
T ss_pred             CCcccCCCCCCCEEEeCCCC---------eEEEcCCHHHHHhcCCCCEEEEEEEcccchhhhhcCCCcEEEEEEEECCCC
Confidence            32   345566764221111         333443211        11110            1112346677765  68


Q ss_pred             EEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-hh-hcCCCchHHHHHHHH
Q 018652          297 KLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIAR  343 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~  343 (352)
                      +|+|+++++..+.++... ..+++.+.++++ .. ++.||+++|++..++
T Consensus       399 ~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  448 (463)
T 2r9z_A          399 RVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTLK  448 (463)
T ss_dssp             EEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGCCC
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHH
Confidence            999999987778777655 455789988888 33 789999999987644

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=9.4e-36  Score=289.84  Aligned_cols=306  Identities=18%  Similarity=0.168  Sum_probs=229.8

Q ss_pred             CCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHh
Q 018652           13 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG   92 (352)
Q Consensus        13 ~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~   92 (352)
                      +.++|.+++++.+.||+||||||++|+. |++++...+++++      ++.+......+++++|||+|++|+|+|..|++
T Consensus       123 ~~~~v~~~~~~~~~~d~lViATGs~p~~-p~~~~~~~~~v~t------~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~  195 (492)
T 3ic9_A          123 DEHTLQVDDHSQVIAKRIVIATGSRPNY-PEFLAAAGSRLLT------NDNLFELNDLPKSVAVFGPGVIGLELGQALSR  195 (492)
T ss_dssp             ETTEEEETTTEEEEEEEEEECCCEECCC-CHHHHTTGGGEEC------HHHHTTCSSCCSEEEEESSCHHHHHHHHHHHH
T ss_pred             cCCEEEEcCCcEEEeCEEEEccCCCCcC-CCCCCccCCcEEc------HHHHhhhhhcCCeEEEECCCHHHHHHHHHHHH
Confidence            3568888888899999999999999874 4434433334433      33333334568999999999999999999999


Q ss_pred             CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC--CC--CEEEcCEEEEccC
Q 018652           93 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIG  168 (352)
Q Consensus        93 ~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--~g--~~i~~D~vi~a~G  168 (352)
                      .|.+|+++++.+++++ .+++++.+.+.+.+++. |++++++.+++++..+++ + .+.+.  +|  +++++|.||+|+|
T Consensus       196 ~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~~D~Vi~a~G  271 (492)
T 3ic9_A          196 LGVIVKVFGRSGSVAN-LQDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDA-V-EVIYFDKSGQKTTESFQYVLAATG  271 (492)
T ss_dssp             TTCEEEEECCTTCCTT-CCCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSS-E-EEEEECTTCCEEEEEESEEEECSC
T ss_pred             cCCeEEEEEECCcccc-cCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCE-E-EEEEEeCCCceEEEECCEEEEeeC
Confidence            9999999999999886 48999999999999988 999999999999865433 3 34543  67  6799999999999


Q ss_pred             CCCCchh--hhhcCCccc-CCcEEeC-CCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-C
Q 018652          169 AKPTVSP--FERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-T  243 (352)
Q Consensus       169 ~~p~~~~--~~~~gl~~~-~g~i~vd-~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-~  243 (352)
                      ++|++++  ++.++++.+ +|+|.|| ++++|+.|+|||+|||+..+.          .+..|..||+.+|.||++.. .
T Consensus       272 ~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~  341 (492)
T 3ic9_A          272 RKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLT----------LLHEAADDGKVAGTNAGAYPVI  341 (492)
T ss_dssp             CEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSC----------SHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCc----------cHHHHHHHHHHHHHHHcCCCCC
Confidence            9999988  788899876 6789999 899999999999999997542          55679999999999999632 2


Q ss_pred             C--CCCCCCeeeeeccCcCCCCcceeeEEeecCccc-----------EEEEc-------------CCCCcEEEEEEE--C
Q 018652          244 H--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-----------TIEIG-------------NFDPKIATFWID--S  295 (352)
Q Consensus       244 ~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-----------~~~~~-------------~~~~~~~~~~~~--~  295 (352)
                      .  .+..+|+.   .|..+      .+..+|....+           -+..+             .....+.++.++  +
T Consensus       342 ~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~  412 (492)
T 3ic9_A          342 AQGQRRAPLSV---VFTEP------QVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTS  412 (492)
T ss_dssp             CEECCCCCEEE---ECSSS------EEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTT
T ss_pred             cccCCCCCcEE---EECCC------CeEEecCCHHHHHhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCC
Confidence            2  23344443   22211      13334433211           01100             011246666664  5


Q ss_pred             CEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh--hhcCCCchHHHHHHHHhcCCc
Q 018652          296 GKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA--KLQQASSVEEALEIARAALPV  348 (352)
Q Consensus       296 ~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~  348 (352)
                      ++|+|+++++.++.++... ..+|+.+.++++.  .++.||+++|++..|++.+.+
T Consensus       413 ~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~  468 (492)
T 3ic9_A          413 GEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTALRDAQQ  468 (492)
T ss_dssp             CBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSCCCTTCTHHHHHHHHHHHHH
T ss_pred             CEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCChHHHHHHHHHHHHH
Confidence            8999999988888888754 4567899988882  368999999999999877543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.2e-35  Score=289.28  Aligned_cols=315  Identities=18%  Similarity=0.304  Sum_probs=233.1

Q ss_pred             CceEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCC--CCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652            5 DPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGY--LPGVHYIRDVADADALISSLEKAKKVVVVGGG   80 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG   80 (352)
                      .++..+++....|.+.+|  .++.||+||||||++|..   +||..  .++...+ +   +..+......+++++|||+|
T Consensus       135 g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~---ipg~~~~~~~~~~~-~---~~~~~~~~~~~~~vvViGgG  207 (491)
T 3urh_A          135 GTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAG---IPGVEVAFDEKTIV-S---STGALALEKVPASMIVVGGG  207 (491)
T ss_dssp             SEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCC---BTTBCCCCCSSSEE-C---HHHHTSCSSCCSEEEEECCS
T ss_pred             EEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCC---CCCcccccCCeeEE-e---hhHhhhhhhcCCeEEEECCC
Confidence            344455666667777777  579999999999998643   33432  2332222 2   23333334568999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---C--
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--  155 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g--  155 (352)
                      ++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+.+++..+++.  .+.+.+   |  
T Consensus       208 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~--~v~~~~~~~g~~  284 (491)
T 3urh_A          208 VIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGA--KVTFEPVKGGEA  284 (491)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEE--EEEEEETTSCCC
T ss_pred             HHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEE--EEEEEecCCCce
Confidence            99999999999999999999999999874 899999999999999999999999999998653332  344432   4  


Q ss_pred             CEEEcCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHH
Q 018652          156 STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  232 (352)
Q Consensus       156 ~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~  232 (352)
                      +++++|.||+|+|++|++++  ++..+++.+ +|+|.||++++|+.|+|||+|||+..+.          .+..|..+|+
T Consensus       285 ~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~  354 (491)
T 3urh_A          285 TTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPM----------LAHKAEDEGV  354 (491)
T ss_dssp             EEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHH
T ss_pred             EEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCcc----------chhHHHHHHH
Confidence            57999999999999999986  678888876 6779999999999999999999996542          5567999999


Q ss_pred             HHHHHHhcCCC-CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEE--E-----------EcCCCCcEEEE
Q 018652          233 HCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI--E-----------IGNFDPKIATF  291 (352)
Q Consensus       233 ~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~--~-----------~~~~~~~~~~~  291 (352)
                      .+|++|++... ..+..+|+..   |..+      .+..+|....       +..  .           .+. ...+.++
T Consensus       355 ~aa~~i~g~~~~~~~~~~p~~~---~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~k~  424 (491)
T 3urh_A          355 AVAEIIAGQAGHVNYDVIPGVV---YTQP------EVASVGKTEEELKAAGVAYKIGKFPFTANGRARAMLQ-TDGFVKI  424 (491)
T ss_dssp             HHHHHHTTSCCCCCTTCCCEEE---CSSS------CEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTC-CCCEEEE
T ss_pred             HHHHHHcCCCcccCCCCCCEEE---EccC------CeEEEeCCHHHHHhCCCCEEEEEEecCcchhhhcCCC-CcEEEEE
Confidence            99999996432 2345566542   3211      1444554331       111  1           011 1236666


Q ss_pred             EEE--CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHhcCCcc
Q 018652          292 WID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPVE  349 (352)
Q Consensus       292 ~~~--~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~~~~~  349 (352)
                      .++  +++|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|++..|++++...
T Consensus       425 i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~  487 (491)
T 3urh_A          425 LADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAALSTFFK  487 (491)
T ss_dssp             EEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHC-
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHHHhhhc
Confidence            665  58999999988888887754 4567999998883 3 689999999999999876543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=9.2e-36  Score=287.39  Aligned_cols=310  Identities=20%  Similarity=0.285  Sum_probs=228.5

Q ss_pred             eEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHH
Q 018652            7 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEV   86 (352)
Q Consensus         7 V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~   86 (352)
                      +..+++....|.+ +|+++.||+||||||++|+. |++++.+.+++++   ..+   +......+++++|||+|++|+|+
T Consensus       111 ~~~i~~~~~~v~~-~g~~~~~d~lviAtG~~p~~-~~~~g~~~~~v~~---~~~---~~~~~~~~~~vvIiGgG~~g~e~  182 (455)
T 2yqu_A          111 ARFLSERKVLVEE-TGEELEARYILIATGSAPLI-PPWAQVDYERVVT---STE---ALSFPEVPKRLIVVGGGVIGLEL  182 (455)
T ss_dssp             EEESSSSEEEETT-TCCEEEEEEEEECCCEEECC-CTTBCCCSSSEEC---HHH---HTCCSSCCSEEEEECCSHHHHHH
T ss_pred             EEEecCCeEEEee-CCEEEEecEEEECCCCCCCC-CCCCCCCcCcEec---hHH---hhccccCCCeEEEECCCHHHHHH
Confidence            3334443333433 67789999999999999864 4455543334432   222   22222357899999999999999


Q ss_pred             HHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEc
Q 018652           87 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  166 (352)
Q Consensus        87 A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  166 (352)
                      |..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++++++++..++ . ..+.+++|+++++|.||+|
T Consensus       183 A~~l~~~g~~V~lv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~-~-v~v~~~~g~~i~~D~vv~A  259 (455)
T 2yqu_A          183 GVVWHRLGAEVIVLEYMDRILP-TMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAK-G-ARVELEGGEVLEADRVLVA  259 (455)
T ss_dssp             HHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT-E-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHcCCEEEEEecCCcccc-ccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-E-EEEEECCCeEEEcCEEEEC
Confidence            9999999999999999998887 48899999999999999999999999999986432 2 3566778889999999999


Q ss_pred             cCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 018652          167 IGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  243 (352)
Q Consensus       167 ~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  243 (352)
                      +|.+|++++  ++.+++..+ +|++.||++++|+.|+|||+|||+..+.          .+..|..||+.+|+||++. .
T Consensus       260 ~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~-~  328 (455)
T 2yqu_A          260 VGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPM----------LAHKASEEGIAAVEHMVRG-F  328 (455)
T ss_dssp             SCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHS-C
T ss_pred             cCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCCcc----------CHHHHHHhHHHHHHHHcCC-C
Confidence            999999887  677888865 5779999999999999999999997542          4556999999999999964 3


Q ss_pred             CC--CCCCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-------------EcCCCCcEEEEEEE--CCEEE
Q 018652          244 HT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPKIATFWID--SGKLK  299 (352)
Q Consensus       244 ~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~~~~~~~~--~~~v~  299 (352)
                      .+  +..+|++  ..++.       .+..+|....       ++..             .++ ...|.+++++  +++|+
T Consensus       329 ~~~~~~~~p~~--~~~~~-------~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~il  398 (455)
T 2yqu_A          329 GHVDYQAIPSV--VYTHP-------EIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGE-TEGFIKVLAHAKTDRIL  398 (455)
T ss_dssp             CCCCGGGCCEE--ECSSS-------EEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHHTC-CCCEEEEEEETTTCBEE
T ss_pred             ccCCCCCCCEE--EEcCC-------ceEEEECCHHHHHHcCCCEEEEEEEcccchHHHhcCC-CcEEEEEEEECCCCEEE
Confidence            33  3334543  21111       1333443221       1111             111 2346777775  79999


Q ss_pred             EEEeecCCHHHhh-HHHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCc
Q 018652          300 GVLVESGSPEEFQ-LLPTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV  348 (352)
Q Consensus       300 g~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~  348 (352)
                      |+++++..+.++. .+..+++++.++++ .. ...||+++|++..+++++..
T Consensus       399 G~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~~~~~~  450 (455)
T 2yqu_A          399 GVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAALAAWE  450 (455)
T ss_dssp             EEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHHHHHHS
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHHhc
Confidence            9998777776665 44556799999888 33 78999999999999876543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=1.7e-35  Score=287.31  Aligned_cols=307  Identities=19%  Similarity=0.232  Sum_probs=228.4

Q ss_pred             CceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCC--CCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChH
Q 018652            5 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYI   82 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~--~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~   82 (352)
                      .++..+++....|. .+++++.||+||||||++|+.++  .++|..     ...+   ++.+......+++++|||+|++
T Consensus       128 g~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~-----~~~~---~~~~~~~~~~~~~vvViGgG~~  198 (478)
T 3dk9_A          128 GHAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGAS-----LGIT---SDGFFQLEELPGRSVIVGAGYI  198 (478)
T ss_dssp             SCEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGG-----GSBC---HHHHTTCCSCCSEEEEECCSHH
T ss_pred             eEEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCc-----eeEc---hHHhhchhhcCccEEEECCCHH
Confidence            44556666667777 46778999999999999986431  444422     1222   3333333445799999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---C----
Q 018652           83 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G----  155 (352)
Q Consensus        83 g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g----  155 (352)
                      |+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++..+++....+.+.+   |    
T Consensus       199 g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g  277 (478)
T 3dk9_A          199 AVEMAGILSALGSKTSLMIRHDKVLR-SFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMT  277 (478)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEE
T ss_pred             HHHHHHHHHHcCCeEEEEEeCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccc
Confidence            99999999999999999999999886 589999999999999999999999999999865555233566665   2    


Q ss_pred             CEEEcCEEEEccCCCCCch-h-hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHH
Q 018652          156 STIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ  232 (352)
Q Consensus       156 ~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~  232 (352)
                      +++++|.||+|+|++|+++ + ++.+|++.+ +|+|.||++++|+.|+|||+|||+..+.          .+..|..+|+
T Consensus       278 ~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~  347 (478)
T 3dk9_A          278 MIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL----------LTPVAIAAGR  347 (478)
T ss_dssp             EEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHH
T ss_pred             eEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCCCEEEEEecCCCCc----------cHhHHHHHHH
Confidence            5799999999999999987 4 678888875 6789999999999999999999995432          5566999999


Q ss_pred             HHHHHHhcCC-C--CCCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEEE----c--------CCCCcE
Q 018652          233 HCIKALLSAQ-T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEI----G--------NFDPKI  288 (352)
Q Consensus       233 ~aa~~i~~~~-~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~----~--------~~~~~~  288 (352)
                      .+|++|++.. .  ..+..+|+.   .|...      .+..+|....+         ....    .        ....-+
T Consensus       348 ~aa~~i~~~~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  418 (478)
T 3dk9_A          348 KLAHRLFEYKEDSKLDYNNIPTV---VFSHP------PIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCV  418 (478)
T ss_dssp             HHHHHHHSCCTTCCCCCTTCCEE---ECCSS------CEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEE
T ss_pred             HHHHHHcCCCCcccCCCCCCCeE---EECCC------ceEEeeCCHHHHHhhCCCccEEEEEeecCcchhhhhcCCCcEE
Confidence            9999999652 2  345666764   23211      03444443210         1110    0        011236


Q ss_pred             EEEEEE--CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCCh-h-hhcCCCchHHHHH
Q 018652          289 ATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-A-KLQQASSVEEALE  340 (352)
Q Consensus       289 ~~~~~~--~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~e~~~  340 (352)
                      .++.++  +++|+|+++++.++.++... ..+|+.+.++++ . .++.||+++|++.
T Consensus       419 ~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  475 (478)
T 3dk9_A          419 MKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELV  475 (478)
T ss_dssp             EEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGG
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHH
Confidence            666654  59999999988888887754 456799999888 3 3799999999875

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.7e-35  Score=284.25  Aligned_cols=301  Identities=17%  Similarity=0.250  Sum_probs=223.9

Q ss_pred             CcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC
Q 018652           14 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW   93 (352)
Q Consensus        14 ~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~   93 (352)
                      .++|.+++ +.+.||+||||||++|+.+|.++. + ..+.   +..+.   ......+++++|||+|++|+|+|..|++.
T Consensus       123 ~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~-~-~~v~---~~~~~---~~~~~~~~~vvViGgG~~g~e~A~~l~~~  193 (458)
T 1lvl_A          123 GKQVEVDG-QRIQCEHLLLATGSSSVELPMLPL-G-GPVI---SSTEA---LAPKALPQHLVVVGGGYIGLELGIAYRKL  193 (458)
T ss_dssp             TTEEEETT-EEEECSEEEECCCEEECCBTTBCC-B-TTEE---CHHHH---TCCSSCCSEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCc-c-CcEe---cHHHH---hhhhccCCeEEEECcCHHHHHHHHHHHHC
Confidence            46788876 779999999999999865442332 1 1232   33333   22223578999999999999999999999


Q ss_pred             CCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCC
Q 018652           94 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKP  171 (352)
Q Consensus        94 g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p  171 (352)
                      |.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++.  + . ..+...+|  +++++|.||+|+|.+|
T Consensus       194 g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~-~-v~v~~~~G~~~~i~~D~vv~a~G~~p  268 (458)
T 1lvl_A          194 GAQVSVVEARERILP-TYDSELTAPVAESLKKLGIALHLGHSVEGYEN--G-C-LLANDGKGGQLRLEADRVLVAVGRRP  268 (458)
T ss_dssp             TCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEETTCEEEEEET--T-E-EEEECSSSCCCEECCSCEEECCCEEE
T ss_pred             CCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe--C-C-EEEEECCCceEEEECCEEEECcCCCc
Confidence            999999999999987 58999999999999999999999999999984  2 2 34444456  6899999999999999


Q ss_pred             Cchh--hhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CC
Q 018652          172 TVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YD  247 (352)
Q Consensus       172 ~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~--~~  247 (352)
                      ++++  ++.+|++.++++|.||++++|+.|+|||+|||+..+.          .+..|..||+.+|+||++. ..+  +.
T Consensus       269 ~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~-~~~~~~~  337 (458)
T 1lvl_A          269 RTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRAMAQGEMVAEIIAGK-ARRFEPA  337 (458)
T ss_dssp             CCSSSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHTTC-CCCCCCS
T ss_pred             CCCCCCcHhcCCcccCCEEeECCCCcCCCCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHhcCC-CccCCCC
Confidence            9886  5788888753389999999999999999999997542          4566999999999999963 333  44


Q ss_pred             CCCeeeeeccCcCCCCcceeeEEeecCcc-------cEEE-------------EcCCCCcEEEEEEE--CCEEEEEEeec
Q 018652          248 YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPKIATFWID--SGKLKGVLVES  305 (352)
Q Consensus       248 ~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~~~~~~~~--~~~v~g~~~~~  305 (352)
                      .+|++  ..++.       .+..+|....       ++..             .+. ...|.+++++  +++|+|+++++
T Consensus       338 ~~p~~--~~~~p-------~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kl~~d~~~~~ilG~~~vg  407 (458)
T 1lvl_A          338 AIAAV--CFTDP-------EVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLES-KSGFVRVVARRDNHLILGWQAVG  407 (458)
T ss_dssp             CCCEE--ECSSS-------EEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTC-CCCEEEEEEETTTCBEEEEEEEE
T ss_pred             CCCEE--EECCC-------CeEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCC-CcEEEEEEEECCCCEEEEEEEEC
Confidence            45543  11111       1333343211       1111             111 2347777774  69999999877


Q ss_pred             CCHHHhh-HHHHHHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCcc
Q 018652          306 GSPEEFQ-LLPTLARSQPFVDK-AK-LQQASSVEEALEIARAALPVE  349 (352)
Q Consensus       306 ~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~  349 (352)
                      ..+.++. .+..+|+++.++++ .. ++.||+++|++..+++.+...
T Consensus       408 ~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~~~~~~  454 (458)
T 1lvl_A          408 VAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGH  454 (458)
T ss_dssp             TTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHHHHhcc
Confidence            7766655 55566799998888 33 789999999999998765543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=7.6e-36  Score=290.03  Aligned_cols=311  Identities=19%  Similarity=0.224  Sum_probs=230.2

Q ss_pred             CCceEEEECCCcEEEeCCCe-EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChH
Q 018652            4 QDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYI   82 (352)
Q Consensus         4 ~~~V~~id~~~~~V~~~~g~-~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~   82 (352)
                      ..++..+++....|.+++|. .+.||+||||||++|+. |.++|.....    .+   +..+......+++++|||+|++
T Consensus       127 ~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~-p~i~G~~~~~----~~---~~~~~~~~~~~~~vvViGgG~~  198 (483)
T 3dgh_A          127 NGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRY-PDIPGAVEYG----IT---SDDLFSLDREPGKTLVVGAGYI  198 (483)
T ss_dssp             CSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECC-CSSTTHHHHC----BC---HHHHTTCSSCCCEEEEECCSHH
T ss_pred             EeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCC-CCCCCccccc----Cc---HHHHhhhhhcCCcEEEECCCHH
Confidence            44566677777777777774 79999999999999864 5555532111    12   2333333446789999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-----E
Q 018652           83 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----T  157 (352)
Q Consensus        83 g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-----~  157 (352)
                      |+|+|..|++.|.+|+++++. .+++ .+++++.+.+.+.+++.||++++++.+.+++..+++.+ .+.+.+++     +
T Consensus       199 g~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~  275 (483)
T 3dgh_A          199 GLECAGFLKGLGYEPTVMVRS-IVLR-GFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESE  275 (483)
T ss_dssp             HHHHHHHHHHTTCEEEEEESS-CSST-TSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEE
T ss_pred             HHHHHHHHHHcCCEEEEEeCC-CCCc-ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeE
Confidence            999999999999999999884 5665 48999999999999999999999999999986544443 45555543     7


Q ss_pred             EEcCEEEEccCCCCCchhh--hhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHH
Q 018652          158 IDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI  235 (352)
Q Consensus       158 i~~D~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa  235 (352)
                      +++|.|++++|++|+++++  +.++++.++|+|.||++++|+.|+|||+|||+....         ..+..|..||+.+|
T Consensus       276 ~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa  346 (483)
T 3dgh_A          276 DVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLA  346 (483)
T ss_dssp             EEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCCTTCBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHH
T ss_pred             EEcCEEEECcccccCcCcCCchhcCccccCCEEEECcCCccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHH
Confidence            9999999999999999876  788888777889999999999999999999985211         15667999999999


Q ss_pred             HHHhcCCCC--CCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEE-E----c--------CCCCcEEEE
Q 018652          236 KALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE-I----G--------NFDPKIATF  291 (352)
Q Consensus       236 ~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~-~----~--------~~~~~~~~~  291 (352)
                      +||++....  .+..+|+......+         +..+|....+         ... .    .        ....-|.++
T Consensus       347 ~~i~g~~~~~~~~~~~p~~~~~~p~---------~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  417 (483)
T 3dgh_A          347 RRLYGGSTQRMDYKDVATTVFTPLE---------YACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKA  417 (483)
T ss_dssp             HHHHSCCCCCCCCTTCCEEECSSSE---------EEEEECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEE
T ss_pred             HHHcCCCCCcCCCCCCCEEEECCCc---------cEEEeCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEE
Confidence            999975433  45667765433222         3344443210         110 0    0        011236666


Q ss_pred             EEE---CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHH
Q 018652          292 WID---SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIAR  343 (352)
Q Consensus       292 ~~~---~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~  343 (352)
                      .++   +++|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|++..+.
T Consensus       418 i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  475 (483)
T 3dgh_A          418 VAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLA  475 (483)
T ss_dssp             EEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGGCC
T ss_pred             EEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence            654   48999999988888887654 4557999998883 3 799999999987654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=1.2e-35  Score=290.31  Aligned_cols=297  Identities=19%  Similarity=0.229  Sum_probs=201.6

Q ss_pred             CeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 018652           22 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF  101 (352)
Q Consensus        22 g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~  101 (352)
                      ++.+++|++|||||++|..+|.+++. ...+  +    +.+.+......+++++|||||++|+|+|..++++|.+||++.
T Consensus       181 ~~~i~a~~iiIATGs~P~~P~~~~~~-~~~~--~----ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~  253 (542)
T 4b1b_A          181 EETVTGKYILIATGCRPHIPDDVEGA-KELS--I----TSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAV  253 (542)
T ss_dssp             EEEEEEEEEEECCCEEECCCSSSBTH-HHHC--B----CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEeeeeEEeccCCCCCCCCcccCC-Cccc--c----CchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEec
Confidence            45799999999999999754332221 1111  1    244555555678999999999999999999999999999998


Q ss_pred             cCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh--hhhc
Q 018652          102 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERV  179 (352)
Q Consensus       102 ~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~  179 (352)
                      +. ++++ .++++++..+.+.|++.||+++++..+.+++..+ +. ..+.+.+++.+.+|.|++|+|++||++.  ++.+
T Consensus       254 ~~-~~L~-~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~-~~-~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~  329 (542)
T 4b1b_A          254 RS-IVLR-GFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD-DK-ILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESL  329 (542)
T ss_dssp             SS-CSST-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEESCGGGCGGGT
T ss_pred             cc-cccc-ccchhHHHHHHHHHHhhcceeecceEEEEEEecC-Ce-EEEEEcCCCeEEEEEEEEcccccCCccccCcccc
Confidence            75 5676 4899999999999999999999999999998653 33 3677888889999999999999999986  4566


Q ss_pred             CCccc-CCc-EEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCeeeee
Q 018652          180 GLNSS-VGG-IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSR  255 (352)
Q Consensus       180 gl~~~-~g~-i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~p~~~~~  255 (352)
                      ++..+ +++ +.+|+++||++|+|||+|||+.....         ....|..+|+.++.+|++....  .+..+|+.-  
T Consensus       330 gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p~---------La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~v--  398 (542)
T 4b1b_A          330 NMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVPE---------LAPVAIKAGEILARRLFKDSDEIMDYSYIPTSI--  398 (542)
T ss_dssp             TCCEETTTTEECCCTTSBCSSTTEEECTTSBTTCCC---------CHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEE--
T ss_pred             eeeecccCceEeccccccccCCCeEEeccccCCchh---------HHHHHHHHHHHHHHHHhcCCCcccCCCCCceEE--
Confidence            77765 344 57889999999999999999854211         2334899999999999975543  356677753  


Q ss_pred             ccCcCCCCcceeeEEeecCccc---------EE-------------------EEc--------CCCCcEEEEE-EE--CC
Q 018652          256 VFEYEGSPRKVWWQFFGDNVGE---------TI-------------------EIG--------NFDPKIATFW-ID--SG  296 (352)
Q Consensus       256 ~~~~~g~~~~~~~~~~G~~~~~---------~~-------------------~~~--------~~~~~~~~~~-~~--~~  296 (352)
                       |..+-      +..+|....+         +.                   ...        .....|.++. ++  ++
T Consensus       399 -ft~Pe------iA~VGlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~  471 (542)
T 4b1b_A          399 -YTPIE------YGACGYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDN  471 (542)
T ss_dssp             -CSSSC------EEEEECCHHHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTT
T ss_pred             -eCCCC------eEEEeCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCC
Confidence             32211      2333332110         00                   000        0012244544 33  58


Q ss_pred             EEEEEEeecCCHHHhhHHHH-HHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCC
Q 018652          297 KLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALP  347 (352)
Q Consensus       297 ~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~  347 (352)
                      +|+|+++++.++.+++.... +|+.+.++++ .. ++.|||++|++..+..++.
T Consensus       472 ~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~HPTlsE~l~~~~~t~~  525 (542)
T 4b1b_A          472 RVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAESFMNLFVTIS  525 (542)
T ss_dssp             BEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC-------------------
T ss_pred             EEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccCCcCCCHHHHHHHHHHHHH
Confidence            99999998889998876555 4689999888 33 7999999999999877653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=1.5e-35  Score=288.23  Aligned_cols=313  Identities=21%  Similarity=0.264  Sum_probs=229.7

Q ss_pred             cCCceEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCC-CCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            3 YQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         3 ~~~~V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~-~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      +..++..+++....|.+.+|  .++.||+||||||++|+. |+ +||.....    .+   +..+......+++++|||+
T Consensus       122 i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~-p~~i~G~~~~~----~~---~~~~~~~~~~~~~vvViGg  193 (488)
T 3dgz_A          122 FNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY-PTQVKGALEYG----IT---SDDIFWLKESPGKTLVVGA  193 (488)
T ss_dssp             ECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECC-CSSCBTHHHHC----BC---HHHHTTCSSCCCSEEEECC
T ss_pred             EEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCC-CCCCCCccccc----Cc---HHHHHhhhhcCCeEEEECC
Confidence            34556666666667777777  479999999999999874 44 55532111    12   2333333446789999999


Q ss_pred             ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---CC
Q 018652           80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS  156 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g~  156 (352)
                      |++|+|+|..|+++|.+||++++. .+++ .+++++.+.+.+.+++.||++++++.+.+++..+++.+ .+.+.+   |+
T Consensus       194 G~ig~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~  270 (488)
T 3dgz_A          194 SYVALECAGFLTGIGLDTTVMMRS-IPLR-GFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGK  270 (488)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTE
T ss_pred             CHHHHHHHHHHHHcCCceEEEEcC-cccc-cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCe
Confidence            999999999999999999999986 4555 48999999999999999999999999999986444433 344433   54


Q ss_pred             --EEEcCEEEEccCCCCCchh--hhhcCCccc--CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHH
Q 018652          157 --TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  230 (352)
Q Consensus       157 --~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~  230 (352)
                        ++++|.|++++|++|++++  ++.++++.+  +|+|.||+++||+.|+|||+|||+....         ..+..|..+
T Consensus       271 ~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~  341 (488)
T 3dgz_A          271 EDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRP---------ELTPTAIKA  341 (488)
T ss_dssp             EEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEEECGGGBTTCC---------CCHHHHHHH
T ss_pred             eEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCCCEEEeEEecCCCC---------cchhHHHHH
Confidence              4799999999999999987  678888875  6789999999999999999999985221         155679999


Q ss_pred             HHHHHHHHhcCCCC--CCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEE-Ec------------CCCC
Q 018652          231 AQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE-IG------------NFDP  286 (352)
Q Consensus       231 g~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~-~~------------~~~~  286 (352)
                      |+.+|+||++....  .+..+|+......+         +..+|....+         ... ..            +...
T Consensus       342 g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~---------~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (488)
T 3dgz_A          342 GKLLAQRLFGKSSTLMDYSNVPTTVFTPLE---------YGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQ  412 (488)
T ss_dssp             HHHHHHHHHSCCCCCCCCTTCCEEECSSSE---------EEEEECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTT
T ss_pred             HHHHHHHHcCCCCccCCCCCCCEEEECCCC---------eEEEeCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCc
Confidence            99999999975433  45667775433222         3444443210         111 00            0023


Q ss_pred             cEEEEEEE---CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCChh-h-hcCCCchHHHHHHHHh
Q 018652          287 KIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARA  344 (352)
Q Consensus       287 ~~~~~~~~---~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~  344 (352)
                      -+.++.++   +++|+|+++++.++.++... ..+|+.+.++++. . ++.||+++|++..+..
T Consensus       413 g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  476 (488)
T 3dgz_A          413 CYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHI  476 (488)
T ss_dssp             CEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSTHHHHTCCE
T ss_pred             EEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHHH
Confidence            46666665   48999999988888887654 4557999999883 3 7999999999987643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.8e-35  Score=285.97  Aligned_cols=302  Identities=22%  Similarity=0.321  Sum_probs=230.6

Q ss_pred             CcEEEe-CCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHh
Q 018652           14 KQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG   92 (352)
Q Consensus        14 ~~~V~~-~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~   92 (352)
                      .+.+.+ ++++.+.||+||||||++|...|.++|.+     .+.+   ...+......+++++|||+|++|+|+|..|++
T Consensus       120 ~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~-----~~~~---~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~  191 (463)
T 4dna_A          120 PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHE-----LCIT---SNEAFDLPALPESILIAGGGYIAVEFANIFHG  191 (463)
T ss_dssp             SSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGG-----GCBC---HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCcc-----cccc---HHHHhhhhcCCCeEEEECCCHHHHHHHHHHHH
Confidence            467777 57788999999999999986245545432     1222   23333334468999999999999999999999


Q ss_pred             CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE-cCCCCEEEcCEEEEccCCCC
Q 018652           93 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus        93 ~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~-~~~g~~i~~D~vi~a~G~~p  171 (352)
                      .|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.+++++..+++. ..|. +.+|+ +++|.||+|+|++|
T Consensus       192 ~g~~Vt~v~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p  268 (463)
T 4dna_A          192 LGVKTTLIYRGKEILS-RFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMP  268 (463)
T ss_dssp             TTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEE
T ss_pred             cCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCccc
Confidence            9999999999998886 5899999999999999999999999999998654443 3677 88888 99999999999999


Q ss_pred             Cchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CC
Q 018652          172 TVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TY  246 (352)
Q Consensus       172 ~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~  246 (352)
                      ++.+  ++.+|++.+ +|+|.||+++||+.|+|||+|||+..+.          .+..|..||+.+|+||++....  .+
T Consensus       269 ~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~  338 (463)
T 4dna_A          269 NTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQ----------LTPVAIHEAMCFIETEYKNNPTSPDH  338 (463)
T ss_dssp             SCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGGSSCC----------CHHHHHHHHHHHHHHHHSSCCCCCCC
T ss_pred             CCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEecCCCCC----------ChHHHHHHHHHHHHHHcCCCCcccCC
Confidence            9987  778898876 5789999999999999999999997432          5567999999999999975433  34


Q ss_pred             CCCCeeeeeccCcCCCCcceeeEEeecCccc------EEEEc-----C--------CCCcEEEEEEE--CCEEEEEEeec
Q 018652          247 DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------TIEIG-----N--------FDPKIATFWID--SGKLKGVLVES  305 (352)
Q Consensus       247 ~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------~~~~~-----~--------~~~~~~~~~~~--~~~v~g~~~~~  305 (352)
                      ..+|+.   .|...      .+...|....+      -+..+     .        ....+.++.++  +++|+|+++++
T Consensus       339 ~~~p~~---~~~~p------~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g  409 (463)
T 4dna_A          339 DLIATA---VFSQP------EIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILG  409 (463)
T ss_dssp             SCCCEE---ECSSS------CEEEEECCHHHHHHHSSEEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEES
T ss_pred             CCCCEE---EECCC------CeEEecCCHHHHHHcCCCeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEEC
Confidence            556654   23211      14445544321      01100     0        11236666665  58999999988


Q ss_pred             CCHHHhhHHH-HHHhCCCCCChh-h-hcCCCchHHHHHHHHhc
Q 018652          306 GSPEEFQLLP-TLARSQPFVDKA-K-LQQASSVEEALEIARAA  345 (352)
Q Consensus       306 ~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~e~~~~~~~~  345 (352)
                      .++.++.... .+|+.+.++++. . ++.||+++|++..++..
T Consensus       410 ~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  452 (463)
T 4dna_A          410 HDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQP  452 (463)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGGTCCCSC
T ss_pred             CCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHhhh
Confidence            8888877554 557999998883 3 79999999999887643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=8.2e-35  Score=284.90  Aligned_cols=315  Identities=20%  Similarity=0.235  Sum_probs=228.5

Q ss_pred             cCCceEEEECCCcEEEeCCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652            3 YQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG   80 (352)
Q Consensus         3 ~~~~V~~id~~~~~V~~~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG   80 (352)
                      +..++..+++....|.+.+|+  ++.||+||||||++|+. |.++|... .   ..+   ...+......+++++|||+|
T Consensus       148 i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~-p~i~G~~~-~---~~t---~~~~~~l~~~~~~vvVIGgG  219 (519)
T 3qfa_A          148 ENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY-LGIPGDKE-Y---CIS---SDDLFSLPYCPGKTLVVGAS  219 (519)
T ss_dssp             ECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECC-CCCTTHHH-H---CBC---HHHHTTCSSCCCSEEEECCS
T ss_pred             EEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCC-CCCCCccC-c---eEc---HHHHhhhhhcCCeEEEECCc
Confidence            455677788887788877775  79999999999999864 55444211 1   112   23333333467889999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC---CcE-EEEEcCCC-
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRV-AAVKLEDG-  155 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~---~~~-~~v~~~~g-  155 (352)
                      ++|+|+|..|+++|.+||++++. .+++ .+++++.+.+.+.+++.||++++++.++++...++   +.+ ..+...+| 
T Consensus       220 ~ig~E~A~~l~~~G~~Vtlv~~~-~~l~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~  297 (519)
T 3qfa_A          220 YVALECAGFLAGIGLDVTVMVRS-ILLR-GFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSE  297 (519)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSS
T ss_pred             HHHHHHHHHHHHcCCeEEEEecc-cccc-cCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCc
Confidence            99999999999999999999985 5665 48999999999999999999999988888765322   222 22334555 


Q ss_pred             C--EEEcCEEEEccCCCCCchh--hhhcCCccc--CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          156 S--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       156 ~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                      +  ++++|.|++++|++|++++  ++.++++.+  +|+|.||+++||+.|+|||+|||+....         ..+..|..
T Consensus       298 ~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~---------~~~~~A~~  368 (519)
T 3qfa_A          298 EIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV---------ELTPVAIQ  368 (519)
T ss_dssp             CEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBCSSTTEEECGGGBSSSC---------CCHHHHHH
T ss_pred             EEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCccCCCCEEEEEeccCCCC---------ccHHHHHH
Confidence            2  5789999999999999986  678888875  5789999999999999999999984221         15667999


Q ss_pred             HHHHHHHHHhcCCCC--CCCCCCeeeeeccCcCCCCcceeeEEeecCccc---------EEE----Ec---------CCC
Q 018652          230 SAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE----IG---------NFD  285 (352)
Q Consensus       230 ~g~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~----~~---------~~~  285 (352)
                      ||+.+|+||++....  .+..+|+......+         +..+|....+         +..    ..         ...
T Consensus       369 ~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~---------~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (519)
T 3qfa_A          369 AGRLLAQRLYAGSTVKCDYENVPTTVFTPLE---------YGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNN  439 (519)
T ss_dssp             HHHHHHHHHHSCCCCCCCCTTCCEEECSSSC---------EEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTT
T ss_pred             HHHHHHHHHcCCCCccCCCCcCcEEEECCCc---------eEEecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCC
Confidence            999999999965432  35556654222111         4445543211         110    00         012


Q ss_pred             CcEEEEEEE---CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCCh--hhhcCCCchHHHHHHHHhc
Q 018652          286 PKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIARAA  345 (352)
Q Consensus       286 ~~~~~~~~~---~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~e~~~~~~~~  345 (352)
                      .-|.++.++   +++|+|+++++.++.++... ..+|+.+.++++  ..++.||+++|++..+...
T Consensus       440 ~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~  505 (519)
T 3qfa_A          440 KCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVT  505 (519)
T ss_dssp             TEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGCCCB
T ss_pred             cEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHHhh
Confidence            346676664   48999999988888777644 456799999888  3379999999998876543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=2.2e-34  Score=279.77  Aligned_cols=309  Identities=22%  Similarity=0.313  Sum_probs=230.8

Q ss_pred             CceEEEECCCcEEEeC-CCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652            5 DPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG   83 (352)
Q Consensus         5 ~~V~~id~~~~~V~~~-~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g   83 (352)
                      .++..++.  +.+.+. +++.+.||+||||||+.|...|.++|..  .+.   +   ...+......+++++|||+|++|
T Consensus       134 g~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~--~~~---~---~~~~~~~~~~~~~v~ViGgG~~g  203 (484)
T 3o0h_A          134 SRAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKGSD--LCL---T---SNEIFDLEKLPKSIVIVGGGYIG  203 (484)
T ss_dssp             SCEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBTGG--GSB---C---TTTGGGCSSCCSEEEEECCSHHH
T ss_pred             eEEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc--ccc---c---HHHHHhHHhcCCcEEEECcCHHH
Confidence            35555654  567776 7788999999999999986245555532  121   1   12222223458999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEE
Q 018652           84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI  163 (352)
Q Consensus        84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v  163 (352)
                      +|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++++.|++++..++ .+ .+.+.+|+++++|.|
T Consensus       204 ~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~-~v-~v~~~~g~~i~aD~V  280 (484)
T 3o0h_A          204 VEFANIFHGLGVKTTLLHRGDLILR-NFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTEN-CY-NVVLTNGQTICADRV  280 (484)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSS-SE-EEEETTSCEEEESEE
T ss_pred             HHHHHHHHHcCCeEEEEECCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCC-EE-EEEECCCcEEEcCEE
Confidence            9999999999999999999998887 48999999999999999999999999999986533 33 688899999999999


Q ss_pred             EEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          164 VIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       164 i~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      |+|+|++|++.+  ++.++++.+ +|+|.||++++|+.|+|||+|||+..+.          .+..|..+|+.+|++|++
T Consensus       281 i~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~  350 (484)
T 3o0h_A          281 MLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQ----------LTPVAIHDAMCFVKNAFE  350 (484)
T ss_dssp             EECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTSCC----------CHHHHHHHHHHHHHHHHC
T ss_pred             EEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCCc----------CHHHHHHHHHHHHHHHcC
Confidence            999999999987  678888876 5789999999999999999999997432          556799999999999997


Q ss_pred             CCCC--CCCCCCeeeeeccCcCCCCcceeeEEeecCccc------EEEEc-------------CCCCcEEEEEEE--CCE
Q 018652          241 AQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------TIEIG-------------NFDPKIATFWID--SGK  297 (352)
Q Consensus       241 ~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~------~~~~~-------------~~~~~~~~~~~~--~~~  297 (352)
                      ....  .+..+|+.   .|...      .+..+|....+      -+..+             .....+.++.++  +++
T Consensus       351 ~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~  421 (484)
T 3o0h_A          351 NTSTTPDYDLITTA---VFSQP------EIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRI  421 (484)
T ss_dssp             ---CCCCCTTCCEE---ECCSS------CEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCCEEEEEEEETTTCB
T ss_pred             CCCCcCCCCCCcEE---EECCC------CEEEeeCCHHHHHHcCCCEEEEEecCCcchhhccCCCCcEEEEEEEECCCCE
Confidence            5433  45556664   33221      14455554321      01100             012345666664  589


Q ss_pred             EEEEEeecCCHHHhhHHH-HHHhCCCCCCh-hh-hcCCCchHHHHHHHHhc
Q 018652          298 LKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK-LQQASSVEEALEIARAA  345 (352)
Q Consensus       298 v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~  345 (352)
                      |+|+++++.++.++.... .+|+.+.++++ .. ++.||+++|++..++..
T Consensus       422 ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  472 (484)
T 3o0h_A          422 VVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMYKP  472 (484)
T ss_dssp             EEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGCCCSC
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHhhh
Confidence            999999888888877544 55689999888 33 79999999999887643

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=5.9e-34  Score=283.69  Aligned_cols=311  Identities=18%  Similarity=0.215  Sum_probs=223.7

Q ss_pred             ceEEEECCCcEEEeCCC--eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHH
Q 018652            6 PVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIG   83 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~g--~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g   83 (352)
                      .+..+++....+.+++|  .++.||+||||||++|+. |++||.... ..+      ...+......+++++|||||++|
T Consensus       227 ~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~-p~i~G~~~~-~~~------~~~~~~~~~~~~~vvViGgG~~g  298 (598)
T 2x8g_A          227 KGRLISPHEVQITDKNQKVSTITGNKIILATGERPKY-PEIPGAVEY-GIT------SDDLFSLPYFPGKTLVIGASYVA  298 (598)
T ss_dssp             EEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECC-CSSTTHHHH-CEE------HHHHTTCSSCCCSEEEECCSHHH
T ss_pred             EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCC-CCCCCcccc-eEc------HHHHhhCccCCCEEEEECCCHHH
Confidence            44556666556666677  469999999999999864 555542111 111      22233333457899999999999


Q ss_pred             HHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec-----CC---CcE-EEEEcCC
Q 018652           84 MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-----SD---GRV-AAVKLED  154 (352)
Q Consensus        84 ~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~-----~~---~~~-~~v~~~~  154 (352)
                      +|+|..|+++|.+||++++. .+++ .+++++.+.+.+.+++.||++++++.++++...     ++   +.+ ..+.+.+
T Consensus       299 ~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~  376 (598)
T 2x8g_A          299 LECAGFLASLGGDVTVMVRS-ILLR-GFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTD  376 (598)
T ss_dssp             HHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETT
T ss_pred             HHHHHHHHHcCCEEEEEECC-cCcC-cCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCC
Confidence            99999999999999999988 5665 488999999999999999999999988888532     11   332 2233567


Q ss_pred             CCEEE--cCEEEEccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          155 GSTID--ADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       155 g~~i~--~D~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                      |++++  +|.||+++|++||+++  ++.++++.+ +|+|.||++++|+.|+|||+|||+....         ..+..|..
T Consensus       377 g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~---------~~~~~A~~  447 (598)
T 2x8g_A          377 GKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKP---------QLTPVAIQ  447 (598)
T ss_dssp             SCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHH
T ss_pred             CcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCCcCCCCCEEEEeeecCCCC---------ccHHHHHH
Confidence            87655  9999999999999987  467888875 5789999999999999999999965321         15667999


Q ss_pred             HHHHHHHHHhcCCC--CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc---------cEEEE------------c-CCC
Q 018652          230 SAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIEI------------G-NFD  285 (352)
Q Consensus       230 ~g~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~---------~~~~~------------~-~~~  285 (352)
                      +|+.+|++|++...  ..+..+|+.+....+         +..+|....         .....            + +..
T Consensus       448 ~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~---------~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (598)
T 2x8g_A          448 AGRYLARRLFAGATELTDYSNVATTVFTPLE---------YGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDN  518 (598)
T ss_dssp             HHHHHHHHHHHCCCCCCCCTTCCEEECSSSC---------EEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSS
T ss_pred             hHHHHHHHHhcCCCcccCCCCCcEEEECCCc---------eEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCC
Confidence            99999999996543  345666765432222         333443211         01110            0 012


Q ss_pred             CcEEEEEEE---CCEEEEEEeecCCHHHhhHH-HHHHhCCCCCCh--hhhcCCCchHHHHHHHHh
Q 018652          286 PKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIARA  344 (352)
Q Consensus       286 ~~~~~~~~~---~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~e~~~~~~~  344 (352)
                      ..|.++.++   +++|+|+++++.++.++... ..+|+.+.++++  ..++.||+++|++..++.
T Consensus       519 ~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  583 (598)
T 2x8g_A          519 VCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTLHV  583 (598)
T ss_dssp             CEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCCC
T ss_pred             cEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHHHH
Confidence            346666664   69999999977778777644 456789998888  337999999999988775

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=1.5e-32  Score=267.22  Aligned_cols=226  Identities=23%  Similarity=0.327  Sum_probs=181.9

Q ss_pred             ccCCceEEEECCCcEEEeC--------------------CCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHH
Q 018652            2 IYQDPVTSIDIEKQTLITN--------------------SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA   61 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~--------------------~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~   61 (352)
                      ++..+|++||+++++|+++                    ++.+++||+||||||+.|+. +.+||.. +..+.++++.++
T Consensus       113 ~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~-~~ipG~~-e~a~~l~t~~dA  190 (502)
T 4g6h_A          113 YYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNT-FGIPGVT-DYGHFLKEIPNS  190 (502)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECC-TTCTTHH-HHCEECSSHHHH
T ss_pred             EEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCccccc-CCccCcc-cccCCCCCHHHH
Confidence            3457899999999998763                    46689999999999999875 4455532 335778999988


Q ss_pred             HHHHHhhc-----------------CCCeEEEECCChHHHHHHHHHHhCC--------------CcEEEEecCCcccccc
Q 018652           62 DALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGWK--------------LDTTIIFPENHLLQRL  110 (352)
Q Consensus        62 ~~~~~~~~-----------------~~~~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtvv~~~~~~~~~~  110 (352)
                      ..+++.+.                 ...+++|||||++|+|+|..|++++              .+|+++++.+++++ .
T Consensus       191 ~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~-~  269 (502)
T 4g6h_A          191 LEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLN-M  269 (502)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSST-T
T ss_pred             HHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccccc-C
Confidence            77655431                 1247999999999999999987543              67999999999998 5


Q ss_pred             cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC----EEEcCEEEEccCCCCCc---hhhhhcCCcc
Q 018652          111 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTV---SPFERVGLNS  183 (352)
Q Consensus       111 ~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~----~i~~D~vi~a~G~~p~~---~~~~~~gl~~  183 (352)
                      +++.+++.+++.|++.||++++++.|++++.  ++......+.+|+    ++++|.+|||+|.+|+.   .+....++..
T Consensus       270 ~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~  347 (502)
T 4g6h_A          270 FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQN  347 (502)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGT
T ss_pred             CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccc
Confidence            8999999999999999999999999999973  3444455667774    69999999999999983   2344555554


Q ss_pred             c-CCcEEeCCCCCC-CCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          184 S-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       184 ~-~g~i~vd~~~~t-~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      + +|+|.||++||+ ++|||||+|||+..+.++        ..+.|.+||+.+|+||..
T Consensus       348 ~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~--------~a~~A~qqg~~~A~ni~~  398 (502)
T 4g6h_A          348 SSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPP--------TAQVAHQEAEYLAKNFDK  398 (502)
T ss_dssp             TCCSSEEBCTTSBBTTCSSEEECGGGEESSSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceeECCccccCCCCCEEEEEcccCCCCCC--------chHHHHHHHHHHHHHHHH
Confidence            4 688999999999 899999999999876543        556799999999999963

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.97  E-value=5.4e-30  Score=239.46  Aligned_cols=220  Identities=24%  Similarity=0.378  Sum_probs=175.1

Q ss_pred             ccCCceEEEECCCc---EEEeCCCeEEecCeEEEccCCC---CCCCCCCCC-C-CCC--cEEEe-cCHHHHHHHHHhhcC
Q 018652            2 IYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT---ASRFPEKIG-G-YLP--GVHYI-RDVADADALISSLEK   70 (352)
Q Consensus         2 ~~~~~V~~id~~~~---~V~~~~g~~~~yd~lViAtG~~---~~~~~~~~g-~-~~~--~v~~~-~~~~~~~~~~~~~~~   70 (352)
                      +++++|+.|+.+..   .|.+++|+.+.||+||+|||+.   |. .+.++| . ...  ++++. ++..        ...
T Consensus        92 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~-~~~i~g~~~~~~~~~v~~~~~~~~--------~~~  162 (360)
T 3ab1_A           92 VLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPR-KLPQLGNIDHLTGSSVYYAVKSVE--------DFK  162 (360)
T ss_dssp             ECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBC-CCGGGCCCTTTBTTTEESSCSCGG--------GGT
T ss_pred             EcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCC-CCCCCCchhhCcCceEEEecCCHH--------HcC
Confidence            46789999997643   7888888889999999999994   43 344555 2 222  34332 2111        125


Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  150 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v  150 (352)
                      +++++|||+|.+|+|+|..|++.+.+|+++++.+.+.+   .+...+.+.+.+++.||++++++.++++..+ ++.+..|
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~~v~~v  238 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG---HGKTAHEVERARANGTIDVYLETEVASIEES-NGVLTRV  238 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS---CSHHHHSSHHHHHHTSEEEESSEEEEEEEEE-TTEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC---CHHHHHHHHHHhhcCceEEEcCcCHHHhccC-CCceEEE
Confidence            79999999999999999999999999999999887654   2456677888889999999999999999864 4554455


Q ss_pred             EcC--CC--CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHH
Q 018652          151 KLE--DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  226 (352)
Q Consensus       151 ~~~--~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~  226 (352)
                      .+.  +|  +++++|.||+++|++|++++++.++++.++|++.||++++|+.|+|||+|||+..+..       ...+..
T Consensus       239 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~  311 (360)
T 3ab1_A          239 HLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK-------LKIIQT  311 (360)
T ss_dssp             EEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC-------CCSHHH
T ss_pred             EEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc-------cceeeh
Confidence            553  77  5799999999999999999999888887778999999999999999999999986532       226777


Q ss_pred             HHHHHHHHHHHHhcC
Q 018652          227 ARQSAQHCIKALLSA  241 (352)
Q Consensus       227 A~~~g~~aa~~i~~~  241 (352)
                      |..+|..+|++|.+.
T Consensus       312 A~~~g~~aa~~i~~~  326 (360)
T 3ab1_A          312 GLSEATMAVRHSLSY  326 (360)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhh
Confidence            999999999999753

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.97  E-value=7.7e-30  Score=235.81  Aligned_cols=233  Identities=18%  Similarity=0.233  Sum_probs=180.1

Q ss_pred             ccCCceEEEECCC--cEEEeCCCeEEecCeEEEccCCC---CCCCCCCCCCCC---CcEEEe-cCHHHHHHHHHhhcCCC
Q 018652            2 IYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT---ASRFPEKIGGYL---PGVHYI-RDVADADALISSLEKAK   72 (352)
Q Consensus         2 ~~~~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~---~~~~~~~~g~~~---~~v~~~-~~~~~~~~~~~~~~~~~   72 (352)
                      +++++|+.++.++  ..|.+++|+.+.||+||+|||+.   |. .+.++|...   .++++. ++..        ...++
T Consensus        83 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~-~~~i~g~~~~~~~~~~~~~~~~~--------~~~~~  153 (335)
T 2zbw_A           83 SLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPR-RIGAPGEREFEGRGVYYAVKSKA--------EFQGK  153 (335)
T ss_dssp             EESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEEC-CCCCTTTTTTBTTTEESSCSCGG--------GGTTC
T ss_pred             EeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCC-CCCCCChhhccCcEEEEecCchh--------hcCCC
Confidence            4678999998765  46777788889999999999994   54 344455321   224321 1111        12589


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  152 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~  152 (352)
                      +++|||+|.+|+|+|..|++.|.+|+++++.+.+++   .+...+.+.+.+++.||++++++.+.+++.  ++.+..+.+
T Consensus       154 ~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~--~~~~~~v~~  228 (335)
T 2zbw_A          154 RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVV  228 (335)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEEEEE--SSSEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcceeEcc--CCCeeEEEE
Confidence            999999999999999999999999999999887654   356778888889999999999999999986  344445666


Q ss_pred             C---CC--CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHH
Q 018652          153 E---DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  227 (352)
Q Consensus       153 ~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A  227 (352)
                      .   +|  +++++|.||+++|++|+++++++++++.++|++.||++++|+.|+|||+|||+..+..       ...+..|
T Consensus       229 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A  301 (335)
T 2zbw_A          229 FHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK-------LPLIVLG  301 (335)
T ss_dssp             EETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC-------CCCHHHH
T ss_pred             EECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc-------hhhhhhh
Confidence            5   67  5799999999999999999999989887778999999999999999999999986532       1267779


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeeeeec
Q 018652          228 RQSAQHCIKALLSAQTHTYDYLPYFYSRV  256 (352)
Q Consensus       228 ~~~g~~aa~~i~~~~~~~~~~~p~~~~~~  256 (352)
                      ..+|..+|++|.+.. .+....|+.++..
T Consensus       302 ~~~g~~aa~~i~~~l-~~~~~~~~~~~~~  329 (335)
T 2zbw_A          302 FGEAAIAANHAAAYA-NPALKVNPGHSSE  329 (335)
T ss_dssp             HHHHHHHHHHHHHHH-CTTSCSSCCCGGG
T ss_pred             HHHHHHHHHHHHHHh-hhhhccCCccccc
Confidence            999999999997532 2233344444443

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.97  E-value=9.7e-29  Score=225.98  Aligned_cols=214  Identities=24%  Similarity=0.339  Sum_probs=167.3

Q ss_pred             ccCCceEEEECC-----CcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCe
Q 018652            2 IYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKK   73 (352)
Q Consensus         2 ~~~~~V~~id~~-----~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~   73 (352)
                      +.+++|+.++++     ...|.+++|+.+.||+||+|||++|.. |.++|..   .++++++      ..+......+++
T Consensus        74 ~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~  146 (310)
T 1fl2_A           74 IDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN-MNVPGEDQYRTKGVTYC------PHCDGPLFKGKR  146 (310)
T ss_dssp             ECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHHGGGGBTCE
T ss_pred             EccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC-CCCCChhhcccceeEEe------ccCcHhhcCCCE
Confidence            456799999875     457888888889999999999998764 4455532   2344432      122334557899


Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652           74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL  152 (352)
Q Consensus        74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~  152 (352)
                      ++|||+|++|+|+|..|++.+.+|+++++.+++.   .++    .+.+.+++ .||+++++++++++..+ ++.+..+.+
T Consensus       147 v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~----~~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~  218 (310)
T 1fl2_A          147 VAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQ----VLQDKLRSLKNVDIILNAQTTEVKGD-GSKVVGLEY  218 (310)
T ss_dssp             EEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCH----HHHHHHHTCTTEEEESSEEEEEEEES-SSSEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccH----HHHHHHhhCCCeEEecCCceEEEEcC-CCcEEEEEE
Confidence            9999999999999999999999999999988663   332    35556676 69999999999999854 445545655


Q ss_pred             C---CCC--EEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHH
Q 018652          153 E---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  226 (352)
Q Consensus       153 ~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~  226 (352)
                      .   +|+  ++++|.|++++|++|+++++++. +..+ +|+|.||++++|+.|+|||+|||+..+..         .+..
T Consensus       219 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---------~~~~  288 (310)
T 1fl2_A          219 RDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK---------QIII  288 (310)
T ss_dssp             EETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSC---------CHHH
T ss_pred             EECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCccCCCCEEEeecccCCcch---------hhhh
Confidence            4   354  68999999999999999888764 6654 58899999999999999999999986532         5566


Q ss_pred             HHHHHHHHHHHHhc
Q 018652          227 ARQSAQHCIKALLS  240 (352)
Q Consensus       227 A~~~g~~aa~~i~~  240 (352)
                      |+.+|+.+|.+|..
T Consensus       289 A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          289 ATGEGAKASLSAFD  302 (310)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHH
Confidence            89999999998864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.96  E-value=5e-29  Score=228.33  Aligned_cols=214  Identities=24%  Similarity=0.346  Sum_probs=162.4

Q ss_pred             CCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCC---CcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652            4 QDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLEKAKKVVVVGGG   80 (352)
Q Consensus         4 ~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG   80 (352)
                      +..+...+.....+.+.+++++.||+||||||++|+. |++||.+.   .+++++      ..+......+++++|||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~-~~ipG~~~~~~~~v~~~------~~~~~~~~~~k~vvViGgG  154 (312)
T 4gcm_A           82 GDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKK-IGVPGEQELGGRGVSYC------AVCDGAFFKNKRLFVIGGG  154 (312)
T ss_dssp             CCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHHGGGGTTCEEEEECCS
T ss_pred             eeeeeeeeeecceeeccCCeEEEeceeEEcccCccCc-CCCCChhhhCCccEEee------eccCccccCCCEEEEECCC
Confidence            3445556666667777788899999999999999874 55677543   234433      1223334578999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCc--EEEEEcC--CCC
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR--VAAVKLE--DGS  156 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~--~~~v~~~--~g~  156 (352)
                      ++|+|+|..|++.|.+||++++.+++++..      ....+.+++.++.......+..+...+...  .......  ++.
T Consensus       155 ~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (312)
T 4gcm_A          155 DSAVEEGTFLTKFADKVTIVHRRDELRAQR------ILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEE  228 (312)
T ss_dssp             HHHHHHHHHHTTTCSEEEEECSSSSCCSCH------HHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             HHHHHHHHHHHhcCCEEEEEecccccCcch------hHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCcee
Confidence            999999999999999999999998876531      123355677889988887776665432211  1112222  335


Q ss_pred             EEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHH
Q 018652          157 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK  236 (352)
Q Consensus       157 ~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~  236 (352)
                      .+++|.|++++|.+|++.+++.+++..++|+|.||++||||+|+|||+|||+..+..         .+..|..+|+.||.
T Consensus       229 ~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~~---------~~~~A~~~G~~AA~  299 (312)
T 4gcm_A          229 THEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLR---------QIVTATGDGSIAAQ  299 (312)
T ss_dssp             EEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSCC---------SHHHHHHHHHHHHH
T ss_pred             EEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcch---------HHHHHHHHHHHHHH
Confidence            799999999999999999999999988888999999999999999999999975422         45569999999999


Q ss_pred             HHh
Q 018652          237 ALL  239 (352)
Q Consensus       237 ~i~  239 (352)
                      +|.
T Consensus       300 ~i~  302 (312)
T 4gcm_A          300 SAA  302 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            985

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.96  E-value=9.1e-30  Score=234.56  Aligned_cols=230  Identities=17%  Similarity=0.260  Sum_probs=174.7

Q ss_pred             ccCCceEEEECCCc---EEEeCCCeEEecCeEEEccCC---CCCCCCCCCCCCC---CcEEEecCHHHHHHHHHhhcCCC
Q 018652            2 IYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC---TASRFPEKIGGYL---PGVHYIRDVADADALISSLEKAK   72 (352)
Q Consensus         2 ~~~~~V~~id~~~~---~V~~~~g~~~~yd~lViAtG~---~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~~~~   72 (352)
                      +++++|++++.+.+   .|.+++|+ +.||+||+|||+   .|+ .+.++|...   .++++  .+.+..     ...++
T Consensus        85 ~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~-~~~~~g~~~~~g~~~~~--~~~~~~-----~~~~~  155 (332)
T 3lzw_A           85 CLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR-KLELENAEQYEGKNLHY--FVDDLQ-----KFAGR  155 (332)
T ss_dssp             ECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC-CCCCTTGGGGBTTTEES--SCSCGG-----GGBTC
T ss_pred             EccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC-CCCCCChhhccCceEEE--ecCCHH-----HcCCC
Confidence            46899999998766   88888886 999999999999   665 344555432   23433  111111     12589


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  152 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~  152 (352)
                      +++|||+|.+|+|+|..|++.+.+|+++++.+++.+  .++     ..+.+++.||++++++.+.+++.+++  ...+.+
T Consensus       156 ~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~~~-----~~~~l~~~gv~~~~~~~v~~i~~~~~--~~~v~~  226 (332)
T 3lzw_A          156 RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--HEH-----SVENLHASKVNVLTPFVPAELIGEDK--IEQLVL  226 (332)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--CHH-----HHHHHHHSSCEEETTEEEEEEECSSS--CCEEEE
T ss_pred             EEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--cHH-----HHHHHhcCCeEEEeCceeeEEecCCc--eEEEEE
Confidence            999999999999999999999999999999887643  222     23447889999999999999985433  334555


Q ss_pred             CC-----CCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHH
Q 018652          153 ED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA  227 (352)
Q Consensus       153 ~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A  227 (352)
                      .+     ++++++|.||+++|.+|++++++.++++.++|+|.||++++|+.|+|||+|||+..+..       ...+..|
T Consensus       227 ~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------~~~~~~A  299 (332)
T 3lzw_A          227 EEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK-------VNLIASG  299 (332)
T ss_dssp             EETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTTC-------CCCHHHH
T ss_pred             EecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCCC-------cceEeee
Confidence            44     35799999999999999999999999988888999999999999999999999976432       2267779


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCeeeeec
Q 018652          228 RQSAQHCIKALLSAQTHTYDYLPYFYSRV  256 (352)
Q Consensus       228 ~~~g~~aa~~i~~~~~~~~~~~p~~~~~~  256 (352)
                      ..+|+.+|.+|...........|++++..
T Consensus       300 ~~~g~~aa~~i~~~l~~~~~~~~~~s~~~  328 (332)
T 3lzw_A          300 FGEAPTAVNNAKAYMDPKARVQPLHSTSL  328 (332)
T ss_dssp             HHHHHHHHHHHHHHHCTTSCSSCCCHHHH
T ss_pred             hhhHHHHHHHHHHhhChhhccCCceeccc
Confidence            99999999999753322223344443333

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.96  E-value=5.4e-29  Score=227.74  Aligned_cols=212  Identities=19%  Similarity=0.267  Sum_probs=166.4

Q ss_pred             CceEEEECCCc--EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            5 DPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         5 ~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      ++|++++.+++  .|.+.+|+.+.||+||+|||+.|+ .|.++|..   .++++++..      .......+++++|||+
T Consensus        79 ~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~v~VvG~  151 (311)
T 2q0l_A           79 TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK-RTGIKGESEYWGKGVSTCAT------CDGFFYKNKEVAVLGG  151 (311)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTHHHHBTTTEESCHH------HHGGGGTTSEEEEECC
T ss_pred             EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC-CCCCCChhhccCCcEEEeec------CChhhcCCCEEEEECC
Confidence            68999987666  677788888999999999999886 45555532   144554322      2233457899999999


Q ss_pred             ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH-hCCcEEEcCCeEEEEEecCCCcEEEEEcC---CC
Q 018652           80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG  155 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~-~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g  155 (352)
                      |++|+|+|..|++.|.+|+++++++++.   .++.    +.+.+. +.||++++++.++++..+ ++.+..+.+.   +|
T Consensus       152 G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g  223 (311)
T 2q0l_A          152 GDTAVEEAIYLANICKKVYLIHRRDGFR---CAPI----TLEHAKNNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNTATN  223 (311)
T ss_dssp             SHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEETTEEEEEEEEE-TTEEEEEEEEETTTC
T ss_pred             CHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHH----HHHHHhhCCCeEEEeCCEEEEEECC-CCcEeEEEEEecCCC
Confidence            9999999999999999999999987653   3333    334444 479999999999999854 2444455554   67


Q ss_pred             C--EEEcCEEEEccCCCCCchhhhhcC----Cccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHH
Q 018652          156 S--TIDADTIVIGIGAKPTVSPFERVG----LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR  228 (352)
Q Consensus       156 ~--~i~~D~vi~a~G~~p~~~~~~~~g----l~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~  228 (352)
                      +  ++++|.||+++|++|++++++.++    ++.+ +|+|.||++++|+.|+|||+|||+..+.         ..+..|.
T Consensus       224 ~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------~~~~~A~  294 (311)
T 2q0l_A          224 EKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP---------KQVVCAA  294 (311)
T ss_dssp             CEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------CCHHHHH
T ss_pred             ceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch---------HHHHHHH
Confidence            5  799999999999999999988775    7764 6889999999999999999999998632         1667799


Q ss_pred             HHHHHHHHHHhc
Q 018652          229 QSAQHCIKALLS  240 (352)
Q Consensus       229 ~~g~~aa~~i~~  240 (352)
                      .||+.+|.+|..
T Consensus       295 ~~g~~aa~~i~~  306 (311)
T 2q0l_A          295 SDGATAALSVIS  306 (311)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHH
Confidence            999999999863

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.96  E-value=2.1e-28  Score=225.35  Aligned_cols=210  Identities=20%  Similarity=0.275  Sum_probs=164.1

Q ss_pred             CceEEEECC--C---cEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCC---CcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652            5 DPVTSIDIE--K---QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLEKAKKVVV   76 (352)
Q Consensus         5 ~~V~~id~~--~---~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~vvV   76 (352)
                      ++|++++.+  +   ..|.+.+|+.+.||+||+|||+.|+ .|.+++...   ++++++.      ........+++++|
T Consensus        85 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~i~g~~~~~~~~~~~~~------~~~~~~~~~~~v~V  157 (325)
T 2q7v_A           85 DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR-KLGIPGEDNFWGKGVSTCA------TCDGFFYKGKKVVV  157 (325)
T ss_dssp             CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC-CCCCTTTTTTBTTTEESCH------HHHGGGGTTCEEEE
T ss_pred             eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC-CCCCCChhhccCceEEEec------cCCHHHcCCCEEEE
Confidence            688999876  4   4777788888999999999999886 455566432   3454432      12233456899999


Q ss_pred             ECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHH-hCCcEEEcCCeEEEEEecCCCcEEEEEcC--
Q 018652           77 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLE--  153 (352)
Q Consensus        77 vGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~-~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--  153 (352)
                      ||+|.+|+|+|..|++.|.+|+++++.+.+..   ++.    +.+.+. +.||+++++++++++..+  +.+..+.+.  
T Consensus       158 vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~----~~~~l~~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~  228 (325)
T 2q7v_A          158 IGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKV----AQARAFANPKMKFIWDTAVEEIQGA--DSVSGVKLRNL  228 (325)
T ss_dssp             ECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHH----HHHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEET
T ss_pred             ECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chH----HHHHHHhcCCceEecCCceEEEccC--CcEEEEEEEEC
Confidence            99999999999999999999999999876532   332    333344 469999999999999853  444456654  


Q ss_pred             -CCC--EEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          154 -DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       154 -~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                       +|+  ++++|.||+++|++|++++++++ ++.+ +|+|.||++++|+.|+|||+|||+..+..         .+..|..
T Consensus       229 ~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---------~~~~A~~  298 (325)
T 2q7v_A          229 KTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIYR---------QLATSVG  298 (325)
T ss_dssp             TTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSCC---------CHHHHHH
T ss_pred             CCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCccCCCCEEEeecccCccHH---------HHHHHHH
Confidence             675  79999999999999999998876 6654 68899999999999999999999976311         6677999


Q ss_pred             HHHHHHHHHhc
Q 018652          230 SAQHCIKALLS  240 (352)
Q Consensus       230 ~g~~aa~~i~~  240 (352)
                      ||+.+|.+|..
T Consensus       299 ~g~~aa~~i~~  309 (325)
T 2q7v_A          299 AGTRAAMMTER  309 (325)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.96  E-value=1.6e-28  Score=225.22  Aligned_cols=214  Identities=24%  Similarity=0.323  Sum_probs=169.3

Q ss_pred             CceEEEECCC--cEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCC---CcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            5 DPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         5 ~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      ++|+++++++  ..|.+++|..+.||+||+|||+.|+ .|.++|...   +++++.      .........+++++|+|+
T Consensus        90 ~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~-~~~i~g~~~~~~~~~~~~------~~~~~~~~~~~~v~vvG~  162 (323)
T 3f8d_A           90 DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR-KLGVPGEQEFAGRGISYC------SVADAPLFKNRVVAVIGG  162 (323)
T ss_dssp             SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC-CCCCTTTTTTBTTTEESC------HHHHGGGGTTCEEEEECC
T ss_pred             EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc-cCCCCchhhhcCCceEEe------ccCCHhHcCCCEEEEECC
Confidence            7899998774  4678888889999999999999986 455666543   555442      112223457899999999


Q ss_pred             ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---CC
Q 018652           80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS  156 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g~  156 (352)
                      |.+|+|+|..|.+.|.+|+++++.+++++   .+.   .+++.+++.||++++++.+++++.+  +.+..+.+.+   |+
T Consensus       163 G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~  234 (323)
T 3f8d_A          163 GDSALEGAEILSSYSTKVYLIHRRDTFKA---QPI---YVETVKKKPNVEFVLNSVVKEIKGD--KVVKQVVVENLKTGE  234 (323)
T ss_dssp             SHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCC
T ss_pred             CHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHH---HHHHHHhCCCcEEEeCCEEEEEecc--CceeEEEEEECCCCc
Confidence            99999999999999999999999987765   222   3344444559999999999999854  4445566654   76


Q ss_pred             --EEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          157 --TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       157 --~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                        ++++|.||+++|.+|++++++.++++.+ +|++.||++++|+.|+|||+|||+..+.       ....+..|..+|+.
T Consensus       235 ~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------~~~~~~~A~~~g~~  307 (323)
T 3f8d_A          235 IKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL-------GFRQVITAVAQGAV  307 (323)
T ss_dssp             EEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT-------TCCCHHHHHHHHHH
T ss_pred             eEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC-------cccceeehhhHHHH
Confidence              7999999999999999999999998865 6889999999999999999999998641       01267779999999


Q ss_pred             HHHHHhc
Q 018652          234 CIKALLS  240 (352)
Q Consensus       234 aa~~i~~  240 (352)
                      +|.+|..
T Consensus       308 aa~~i~~  314 (323)
T 3f8d_A          308 AATSAYR  314 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999863

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.96  E-value=2.8e-28  Score=223.98  Aligned_cols=211  Identities=25%  Similarity=0.333  Sum_probs=166.3

Q ss_pred             CceEEEECCCc--EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCC---CcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            5 DPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         5 ~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      ++|++++.+++  .|.+ ++..+.||+||+|||+.|+. |.+++...   .+++++..      .......+++++|||+
T Consensus        92 ~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~-~~i~g~~~~~~~~~~~~~~------~~~~~~~~~~v~viG~  163 (319)
T 3cty_A           92 VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKH-LGVKGESEYFGKGTSYCST------CDGYLFKGKRVVTIGG  163 (319)
T ss_dssp             CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECC-CCCBTTTTTBTTTEESCHH------HHGGGGBTSEEEEECC
T ss_pred             eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCccc-CCCCChHHhCCceEEEEEe------cchhhcCCCeEEEECC
Confidence            68899987665  5666 55679999999999998864 55555422   35544321      2223456899999999


Q ss_pred             ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCC
Q 018652           80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS  156 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~  156 (352)
                      |.+|+|+|..|++.|.+|+++++.+.+..   ++    .+.+.+++.||+++++++++++..+ ++++..+.+.   +|+
T Consensus       164 G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~----~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~g~  235 (319)
T 3cty_A          164 GNSGAIAAISMSEYVKNVTIIEYMPKYMC---EN----AYVQEIKKRNIPYIMNAQVTEIVGD-GKKVTGVKYKDRTTGE  235 (319)
T ss_dssp             SHHHHHHHHHHTTTBSEEEEECSSSSCCS---CH----HHHHHHHHTTCCEECSEEEEEEEES-SSSEEEEEEEETTTCC
T ss_pred             CHHHHHHHHHHHhhCCcEEEEEcCCccCC---CH----HHHHHHhcCCcEEEcCCeEEEEecC-CceEEEEEEEEcCCCc
Confidence            99999999999999999999998876532   33    3455667899999999999999864 3444456554   665


Q ss_pred             --EEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          157 --TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       157 --~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                        ++++|.||+|+|++|+++++++++++.+ +|+|.||++++|+.|+|||+|||+..+..         .+..|..+|+.
T Consensus       236 ~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---------~~~~A~~~g~~  306 (319)
T 3cty_A          236 EKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNFA---------QIASAVGDGCK  306 (319)
T ss_dssp             EEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCCC---------CHHHHHHHHHH
T ss_pred             eEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcchh---------hHHHHHHHHHH
Confidence              6899999999999999999998888865 58899999999999999999999986421         56779999999


Q ss_pred             HHHHHhc
Q 018652          234 CIKALLS  240 (352)
Q Consensus       234 aa~~i~~  240 (352)
                      +|.+|..
T Consensus       307 aa~~i~~  313 (319)
T 3cty_A          307 AALSLYS  313 (319)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.96  E-value=5.3e-29  Score=225.86  Aligned_cols=206  Identities=23%  Similarity=0.194  Sum_probs=166.0

Q ss_pred             cCCceEEEECCC--cEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCC---CcEEEecCHHHHHHHHHhhcCCCeEEEE
Q 018652            3 YQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLEKAKKVVVV   77 (352)
Q Consensus         3 ~~~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~vvVv   77 (352)
                      ++++|+++++++  ..|.+++|+++.||+||+|||+.|+ .|.++|...   .++++..      ........+++++||
T Consensus        75 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~v~vv  147 (297)
T 3fbs_A           75 VEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE-LPEIAGLRERWGSAVFHCP------YCHGYELDQGKIGVI  147 (297)
T ss_dssp             EESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE-CCCCBTTGGGBTTTEESCH------HHHTGGGTTCEEEEE
T ss_pred             EEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC-CCCCCCchhhcCCeeEEcc------cCcchhhcCCEEEEE
Confidence            467899998765  4788889988999999999999986 455666432   3444332      112223468999999


Q ss_pred             CCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCE
Q 018652           78 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST  157 (352)
Q Consensus        78 GgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~  157 (352)
                      |+|.+|+|+|..|.+.| +|+++.+.+..    +.    +.+.+.+++.||+++. +.+++++.+  +   .+.+.+|++
T Consensus       148 G~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~----~~~~~~l~~~gv~i~~-~~v~~i~~~--~---~v~~~~g~~  212 (297)
T 3fbs_A          148 AASPMAIHHALMLPDWG-ETTFFTNGIVE----PD----ADQHALLAARGVRVET-TRIREIAGH--A---DVVLADGRS  212 (297)
T ss_dssp             CCSTTHHHHHHHGGGTS-EEEEECTTTCC----CC----HHHHHHHHHTTCEEEC-SCEEEEETT--E---EEEETTSCE
T ss_pred             ecCccHHHHHHHhhhcC-cEEEEECCCCC----CC----HHHHHHHHHCCcEEEc-ceeeeeecC--C---eEEeCCCCE
Confidence            99999999999999999 99999887652    22    3466788899999996 889999743  2   678899999


Q ss_pred             EEcCEEEEccCCCCCchhhhhcCCcccC---C-cEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          158 IDADTIVIGIGAKPTVSPFERVGLNSSV---G-GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       158 i~~D~vi~a~G~~p~~~~~~~~gl~~~~---g-~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      +++|.|++++|++|+++++++++++.+.   | ++.||++++|+.|+|||+|||+..+.          .+..|..+|+.
T Consensus       213 ~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~~----------~~~~A~~~g~~  282 (297)
T 3fbs_A          213 IALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAG----------SVALAVGDGAM  282 (297)
T ss_dssp             EEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTTC----------CHHHHHHHHHH
T ss_pred             EEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCchH----------HHHHHHHhHHH
Confidence            9999999999999999999998888653   4 79999999999999999999998632          56779999999


Q ss_pred             HHHHHhc
Q 018652          234 CIKALLS  240 (352)
Q Consensus       234 aa~~i~~  240 (352)
                      +|.+|..
T Consensus       283 aa~~i~~  289 (297)
T 3fbs_A          283 AGAAAHR  289 (297)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999863

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.96  E-value=2.2e-28  Score=224.53  Aligned_cols=215  Identities=20%  Similarity=0.283  Sum_probs=168.9

Q ss_pred             CceEEEECCCcEEE-eCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652            5 DPVTSIDIEKQTLI-TNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGGG   80 (352)
Q Consensus         5 ~~V~~id~~~~~V~-~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG   80 (352)
                      .+|+.++.+.+.++ +.++..+.||+||+|||+.|.. |.++|..   ..+++++.      .+...+..+++++|||+|
T Consensus        82 ~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~v~ViG~G  154 (320)
T 1trb_A           82 DHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACA------TSDGFFYRNQKVAVIGGG  154 (320)
T ss_dssp             CCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECC-CCCHHHHHTBTTTEESCH------HHHGGGGTTSEEEEECSS
T ss_pred             eeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCC-CCCCChHHhCCceeEecc------cCCccccCCCeEEEECCC
Confidence            35889998765443 5677889999999999998753 4444421   13444332      222334678999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC----C-
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----G-  155 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~----g-  155 (352)
                      .+|+|+|..|++.|.+|+++++.+.+.   .++.+.+.+.+.+++.||++++++.++++..+ ++.+..+.+.+    | 
T Consensus       155 ~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~g~  230 (320)
T 1trb_A          155 NTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDN  230 (320)
T ss_dssp             HHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCC
T ss_pred             HHHHHHHHHHHhcCCeEEEEEeCCccc---cCHHHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceEEEEEEeccCCCc
Confidence            999999999999999999999987654   36777888888899999999999999999864 33555566644    4 


Q ss_pred             -CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCC-----CCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          156 -STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       156 -~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~-----~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                       +++++|.||+|+|++|++++++ .+++.++|++.||+++     +|+.|+|||+|||+..+..         .+..|..
T Consensus       231 ~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~---------~~~~A~~  300 (320)
T 1trb_A          231 IESLDVAGLFVAIGHSPNTAIFE-GQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR---------QAITSAG  300 (320)
T ss_dssp             CEEEECSEEEECSCEEESCGGGT-TTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSC---------CHHHHHH
T ss_pred             eEEEEcCEEEEEeCCCCChHHhc-ccccccCceEEECCCcccccccCCCCCEEEcccccCCcch---------hhhhhhc
Confidence             4799999999999999998876 4566557889999987     7999999999999986422         5566899


Q ss_pred             HHHHHHHHHhc
Q 018652          230 SAQHCIKALLS  240 (352)
Q Consensus       230 ~g~~aa~~i~~  240 (352)
                      +|+.+|.+|..
T Consensus       301 ~g~~aa~~i~~  311 (320)
T 1trb_A          301 TGCMAALDAER  311 (320)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            99999998864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.96  E-value=3.6e-28  Score=233.06  Aligned_cols=235  Identities=17%  Similarity=0.149  Sum_probs=174.8

Q ss_pred             cCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCC--CcEEEecCHHHHHHHHHhhc---CCCeEEEE
Q 018652            3 YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL--PGVHYIRDVADADALISSLE---KAKKVVVV   77 (352)
Q Consensus         3 ~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~~~---~~~~vvVv   77 (352)
                      +.++|+.||++++.|++++|+++.||+||+|||++|+ .+.+||...  ...+.+.+..++..+.+.+.   .+++++||
T Consensus        77 ~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~-~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVV  155 (437)
T 3sx6_A           77 IAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA-FENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVI  155 (437)
T ss_dssp             ECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEEC-GGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             EEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcC-cccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEE
Confidence            4679999999999999999989999999999999986 455677544  24566777887776654332   25567888


Q ss_pred             CCChH----H--HHHH----HHHHhCCCc-----EEEEecCCccccccc--CHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           78 GGGYI----G--MEVA----AAAVGWKLD-----TTIIFPENHLLQRLF--TPSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        78 GgG~~----g--~e~A----~~l~~~g~~-----Vtvv~~~~~~~~~~~--~~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      |+|..    |  +|+|    ..+++.|.+     |+++++.+.+....+  .++....+++.++++||++++++.+++++
T Consensus       156 GgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~  235 (437)
T 3sx6_A          156 GAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVE  235 (437)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred             EcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEE
Confidence            88554    4  7777    566777865     999999887643211  13578889999999999999999999997


Q ss_pred             ecCCCcEEEEEcCC-----CCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCC-CCCCEEEeccccccCCcc
Q 018652          141 AGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT-RMPGIFAIGDVAAFPLKM  214 (352)
Q Consensus       141 ~~~~~~~~~v~~~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~~~~  214 (352)
                      .+  +........+     ++++++|.+++++|++|+..+.+..++..++|+|.||+++|| ++|||||+|||+..+...
T Consensus       236 ~~--~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~  313 (437)
T 3sx6_A          236 DN--KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVE  313 (437)
T ss_dssp             TT--EEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSC
T ss_pred             CC--eEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEEEEEEeccCCcC
Confidence            42  2111111233     457999999999999988555545677656788999999999 999999999999876421


Q ss_pred             CCc--ccccccHHHHHHHHHHHHHHHhc
Q 018652          215 YDR--TARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       215 ~~~--~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ...  .........|..||+.+|+||..
T Consensus       314 ~~~~~~~~pk~~~~A~~qg~~aA~ni~~  341 (437)
T 3sx6_A          314 TTPVPTGAPKTGYMIESMVSAAVHNIKA  341 (437)
T ss_dssp             CCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            000  00123566799999999999974

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.96  E-value=1.6e-28  Score=224.86  Aligned_cols=216  Identities=20%  Similarity=0.239  Sum_probs=155.2

Q ss_pred             CceEEEECCC--cEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChH
Q 018652            5 DPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYI   82 (352)
Q Consensus         5 ~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~   82 (352)
                      .+|..+....  ..+.+.++.++.||+||||||++|+. |++||.+......+.....+.. ......+++++|||+|++
T Consensus        86 ~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~-~~ipG~~~~~~~~~~~~~~~~~-~~~~~~~~~vvViGgG~i  163 (314)
T 4a5l_A           86 ETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKR-MHVPGEDKYWQNGVSACAICDG-AVPIFRNKVLMVVGGGDA  163 (314)
T ss_dssp             CCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECC-CCCTTHHHHBTTTEESCHHHHT-TSGGGTTSEEEEECSSHH
T ss_pred             eEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccc-cCCCccccccccceeeehhhhh-hhhhcCCCeEEEECCChH
Confidence            3455555433  46777888899999999999999874 5566643221111111222222 122346899999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE-----cCCCCE
Q 018652           83 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK-----LEDGST  157 (352)
Q Consensus        83 g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~-----~~~g~~  157 (352)
                      |+|+|..|+++|.+||++++.+.+..   .+.   ...+.+...+++.+....+.++.... .....+.     ..++++
T Consensus       164 g~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~  236 (314)
T 4a5l_A          164 AMEEALHLTKYGSKVIILHRRDAFRA---SKT---MQERVLNHPKIEVIWNSELVELEGDG-DLLNGAKIHNLVSGEYKV  236 (314)
T ss_dssp             HHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEESS-SSEEEEEEEETTTCCEEE
T ss_pred             HHHHHHHHHHhCCeeeeecccccccc---cch---hhhhhhcccceeeEeeeeeEEEEeee-eccceeEEeeccccccee
Confidence            99999999999999999998775443   222   33455566789999988888887542 2222332     244568


Q ss_pred             EEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 018652          158 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA  237 (352)
Q Consensus       158 i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~  237 (352)
                      +++|.+++++|.+||+++++.. +..+++++.||+++|||+|+|||+|||+..+..         ++..|..+|+.||.+
T Consensus       237 i~~d~vi~a~G~~pn~~~l~~~-~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~~---------~~~~A~~~G~~AA~~  306 (314)
T 4a5l_A          237 VPVAGLFYAIGHSPNSKFLGGQ-VKTADDGYILTEGPKTSVDGVFACGDVCDRVYR---------QAIVAAGSGCMAALS  306 (314)
T ss_dssp             EECSEEEECSCEEESCGGGTTS-SCBCTTSCBCCBTTBCSSTTEEECSTTTCSSCC---------CHHHHHHHHHHHHHH
T ss_pred             eccccceEecccccChhHhccc-ceEcCCeeEeCCCCccCCCCEEEEEeccCCcch---------HHHHHHHHHHHHHHH
Confidence            9999999999999999998653 555545666999999999999999999986543         344588899999988


Q ss_pred             Hh
Q 018652          238 LL  239 (352)
Q Consensus       238 i~  239 (352)
                      +.
T Consensus       307 ~~  308 (314)
T 4a5l_A          307 CE  308 (314)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.96  E-value=1.7e-27  Score=217.75  Aligned_cols=213  Identities=23%  Similarity=0.241  Sum_probs=162.3

Q ss_pred             CceEEE-EC--CCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCC---CcEEEecCHHHHHHHHHhhcCCCeEEEEC
Q 018652            5 DPVTSI-DI--EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLEKAKKVVVVG   78 (352)
Q Consensus         5 ~~V~~i-d~--~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~vvVvG   78 (352)
                      .+|+++ +.  +...+.+..+..+.||+||+|||+.|+ .|.++|...   ++++++.      ........+++++|+|
T Consensus        82 ~~v~~i~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~v~viG  154 (315)
T 3r9u_A           82 VGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK-KAGFKGEDEFFGKGVSTCA------TCDGFFYKNKEVAVLG  154 (315)
T ss_dssp             CCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESCH------HHHGGGGTTSEEEEEC
T ss_pred             EEEEEEecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC-CCCCCChhhcCCCeEEeee------cccccccCcCEEEEEC
Confidence            378888 33  234431332228999999999999886 455666543   4554432      2233455789999999


Q ss_pred             CChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC--CCC
Q 018652           79 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS  156 (352)
Q Consensus        79 gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--~g~  156 (352)
                      +|.+|+|+|..|.+.+.+|+++++.+.+.   ..+.   .+.+.+++.||++++++.+.++..+ ++.+..+.+.  +|+
T Consensus       155 ~g~~~~e~a~~l~~~g~~v~~~~~~~~~~---~~~~---~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~~v~~~~~~g~  227 (315)
T 3r9u_A          155 GGDTALEEALYLANICSKIYLIHRRDEFR---AAPS---TVEKVKKNEKIELITSASVDEVYGD-KMGVAGVKVKLKDGS  227 (315)
T ss_dssp             CBHHHHHHHHHHHTTSSEEEEECSSSSCB---SCHH---HHHHHHHCTTEEEECSCEEEEEEEE-TTEEEEEEEECTTSC
T ss_pred             CCHHHHHHHHHHHhhCCEEEEEEeCCCCC---CCHH---HHHHHHhcCCeEEEeCcEEEEEEcC-CCcEEEEEEEcCCCC
Confidence            99999999999999999999999988763   2333   3455667899999999999999854 4455455554  776


Q ss_pred             --EEEcCEEEEccCCCCCchhhhh---cC-Cccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          157 --TIDADTIVIGIGAKPTVSPFER---VG-LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       157 --~i~~D~vi~a~G~~p~~~~~~~---~g-l~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                        ++++|.||+++|.+|++.+++.   ++ ++.+ +|++.||++++|+.|+|||+|||+..+..         .+..|..
T Consensus       228 ~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~~---------~~~~A~~  298 (315)
T 3r9u_A          228 IRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAPK---------QVICAAG  298 (315)
T ss_dssp             EEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCCC---------CHHHHHH
T ss_pred             eEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCchh---------hhhhHHh
Confidence              7999999999999999988766   54 7765 58899999999999999999999864321         6677999


Q ss_pred             HHHHHHHHHhc
Q 018652          230 SAQHCIKALLS  240 (352)
Q Consensus       230 ~g~~aa~~i~~  240 (352)
                      +|+.+|.+|..
T Consensus       299 ~g~~aa~~i~~  309 (315)
T 3r9u_A          299 DGAVAALSAMA  309 (315)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99999999863

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.96  E-value=8.2e-28  Score=222.01  Aligned_cols=211  Identities=19%  Similarity=0.270  Sum_probs=160.1

Q ss_pred             ceEEEECCCc--EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCC-------CcEEEecCHHHHHHHHHhh--cCCCeE
Q 018652            6 PVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL-------PGVHYIRDVADADALISSL--EKAKKV   74 (352)
Q Consensus         6 ~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~-------~~v~~~~~~~~~~~~~~~~--~~~~~v   74 (352)
                      +|++++.+.+  +|++ ++..+.||+||+|||++|.. |.++|...       .+++++      ..+...+  ..++++
T Consensus        91 ~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~-~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v  162 (333)
T 1vdc_A           91 TVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR-LSFVGSGEVLGGFWNRGISAC------AVCDGAAPIFRNKPL  162 (333)
T ss_dssp             CCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC-CCCBTCSSSSSCCBTTTEESC------HHHHTTSGGGTTSEE
T ss_pred             EEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC-CCCCCccccccccccCcEEEe------ccCccchhhcCCCeE
Confidence            4888987665  6777 77889999999999999864 45666433       233322      1222222  578999


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC-cEEEEEcC
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLE  153 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~-~~~~v~~~  153 (352)
                      +|||+|.+|+|+|..|++.|.+|+++++.+.+..   .+.   ...+.+++.||++++++.+.++..++++ .+..+.+.
T Consensus       163 ~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~---~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~  236 (333)
T 1vdc_A          163 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKI---MQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVK  236 (333)
T ss_dssp             EEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEE
T ss_pred             EEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHH---HHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEE
Confidence            9999999999999999999999999999876532   222   1234456789999999999999864321 44445554


Q ss_pred             ---CC--CEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCC-CCCCCCCEEEeccccccCCccCCcccccccHHH
Q 018652          154 ---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  226 (352)
Q Consensus       154 ---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~  226 (352)
                         +|  +++++|.||+++|++|++++++ .+++.+ +|+|.||++ ++|+.|+|||+|||+..+..         .+..
T Consensus       237 ~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~---------~~~~  306 (333)
T 1vdc_A          237 NVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR---------QAIT  306 (333)
T ss_dssp             ETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCC---------CHHH
T ss_pred             ecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhcccCCCCEEEeeeccCCCch---------hHHH
Confidence               45  4799999999999999998876 467655 688999986 68999999999999986422         5667


Q ss_pred             HHHHHHHHHHHHhc
Q 018652          227 ARQSAQHCIKALLS  240 (352)
Q Consensus       227 A~~~g~~aa~~i~~  240 (352)
                      |..+|+.+|.+|..
T Consensus       307 A~~~g~~aa~~i~~  320 (333)
T 1vdc_A          307 AAGTGCMAALDAEH  320 (333)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHH
Confidence            89999999998864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.95  E-value=4.9e-28  Score=229.53  Aligned_cols=227  Identities=19%  Similarity=0.201  Sum_probs=173.3

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC----CCcEEEecCHHHHHHHHHhhc---CCCeE
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRDVADADALISSLE---KAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~----~~~v~~~~~~~~~~~~~~~~~---~~~~v   74 (352)
                      +++++|++||++++.|++.+|+++.||+||||||++++. +.++|..    ...++.+++.+++..+++.+.   .+..+
T Consensus        72 ~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~-~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  150 (401)
T 3vrd_B           72 VVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLY-DKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVV  150 (401)
T ss_dssp             EECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEECG-GGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEE
T ss_pred             EEEeEEEEEEccCcEEEecccceeecceeeeccCCcccc-CCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcE
Confidence            356789999999999999999999999999999999763 5556532    234456666677766655443   44455


Q ss_pred             EEECCC------h----HHHHHHHHHHhCC--CcEEEEecCCcccc-cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           75 VVVGGG------Y----IGMEVAAAAVGWK--LDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        75 vVvGgG------~----~g~e~A~~l~~~g--~~Vtvv~~~~~~~~-~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      ++.+++      .    .++++|..+++.+  .+|+++++.+.+.. ..+++.+.+.+.+.+++.||++++++.+..++.
T Consensus       151 v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~  230 (401)
T 3vrd_B          151 IIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKT  230 (401)
T ss_dssp             EEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEE
T ss_pred             EEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEe
Confidence            554332      1    4566777776655  67899988776532 235666777777778899999999999998876


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCC-CC-CCCCCEEEecccccc-CCccCCcc
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVAAF-PLKMYDRT  218 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~-~~-t~~~~Iya~GD~a~~-~~~~~~~~  218 (352)
                      +.+..  .+.+++|+++++|.+++++|.+|+ .+++++++..++|+|.||++ || |++|||||+|||+.. +.++    
T Consensus       231 ~~~~~--~v~~~~g~~i~~D~vi~~~g~~~~-~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk----  303 (401)
T 3vrd_B          231 DTEAM--TVETSFGETFKAAVINLIPPQRAG-KIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPK----  303 (401)
T ss_dssp             ETTTT--EEEETTSCEEECSEEEECCCEEEC-HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCB----
T ss_pred             cccce--EEEcCCCcEEEeeEEEEecCcCCc-hhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCCCc----
Confidence            54433  678899999999999999999998 78899999877899999986 65 799999999999864 3222    


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 018652          219 ARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       219 ~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                          ....|.+||+.+|+||+.
T Consensus       304 ----~a~~A~~qa~v~A~ni~~  321 (401)
T 3vrd_B          304 ----SAYSANSQAKVAAAAVVA  321 (401)
T ss_dssp             ----SHHHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHHHH
Confidence                455699999999999964

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.95  E-value=1.2e-27  Score=227.37  Aligned_cols=219  Identities=19%  Similarity=0.198  Sum_probs=175.5

Q ss_pred             CCceEEEECCCcEEEeCCCeE----EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcC-CCeEEEEC
Q 018652            4 QDPVTSIDIEKQTLITNSGKL----LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVG   78 (352)
Q Consensus         4 ~~~V~~id~~~~~V~~~~g~~----~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-~~~vvVvG   78 (352)
                      ..+|+.++++++.|++++++.    +.||+||+|||++|+. +.++|... ....+.+..++..+.+.+.. .++++|||
T Consensus        75 ~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~-~~ipG~~~-~~~~~~~~~~~~~~~~~l~~~~~~~vViG  152 (409)
T 3h8l_A           75 EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLAT-ELVKGWDK-YGYSVCEPEFATKLREKLESFQGGNIAIG  152 (409)
T ss_dssp             ECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECG-GGSBTHHH-HCEESSSTTHHHHHHHHHHHCCSEEEEEE
T ss_pred             EeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCc-cCCCChhh-cCcCcCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            348999999999999988764    9999999999998763 44555322 34566677777777665543 26778999


Q ss_pred             CCh-------------------------HHHHHHH----HHHhCCC----cEEEEecCCcccccccCHHHHHHHHHHHHh
Q 018652           79 GGY-------------------------IGMEVAA----AAVGWKL----DTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  125 (352)
Q Consensus        79 gG~-------------------------~g~e~A~----~l~~~g~----~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~  125 (352)
                      +|.                         .++|+|.    .+++.|.    +|+++++.+ +++ .+++.+.+.+.+.+++
T Consensus       153 ~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l~~  230 (409)
T 3h8l_A          153 SGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLS-DLSPNSRKAVASIYNQ  230 (409)
T ss_dssp             ECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SST-TBCHHHHHHHHHHHHH
T ss_pred             ecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-ccc-ccCHHHHHHHHHHHHH
Confidence            992                         4677774    5667774    899999987 665 4789999999999999


Q ss_pred             CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhc--CCcccCCcEEeCCCCCC-CCCCEE
Q 018652          126 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV--GLNSSVGGIQVDGQFRT-RMPGIF  202 (352)
Q Consensus       126 ~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~--gl~~~~g~i~vd~~~~t-~~~~Iy  202 (352)
                      .||++++++.|++++.+      .+.+++|+++++|.+|+++|.+|+ .+++++  ++..++|++.||+++|| +.||||
T Consensus       231 ~gV~~~~~~~v~~i~~~------~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vf  303 (409)
T 3h8l_A          231 LGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTDLNMVSIKYDNVY  303 (409)
T ss_dssp             HTCEEECSCCEEEECSS------EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEE
T ss_pred             CCCEEEcCCceEEECCC------eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeCcccccCCCCCEE
Confidence            99999999999999743      478899999999999999999998 677777  55445678999999999 899999


Q ss_pred             EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          203 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       203 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      |+|||+..+.+.        .+..|..||+.+|+||...
T Consensus       304 a~GD~~~~~~~~--------~~~~A~~q~~~aa~~i~~~  334 (409)
T 3h8l_A          304 AVGDANSMTVPK--------LGYLAVMTGRIAAQHLANR  334 (409)
T ss_dssp             ECGGGBTTCCSC--------CHHHHHHHHHHHHHHHHHH
T ss_pred             EeehhccCCCCc--------HHHHHHHHHHHHHHHHHHH
Confidence            999999864332        5566999999999999754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.95  E-value=1.2e-27  Score=220.83  Aligned_cols=212  Identities=17%  Similarity=0.252  Sum_probs=163.1

Q ss_pred             cCCceEEEECCCcEEEe-----CCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHh--hcCCC
Q 018652            3 YQDPVTSIDIEKQTLIT-----NSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS--LEKAK   72 (352)
Q Consensus         3 ~~~~V~~id~~~~~V~~-----~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~--~~~~~   72 (352)
                      +++ |++++++.+.+.+     +++..+.||+||+|||+.|+ .|.++|..   ..++++.      ..+...  ...++
T Consensus       103 ~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~-~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~  174 (338)
T 3itj_A          103 TET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK-RMHLPGEETYWQKGISAC------AVCDGAVPIFRNK  174 (338)
T ss_dssp             CSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC-CCCCTTHHHHBTTTEESC------HHHHTTSGGGTTS
T ss_pred             EeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC-CCCCCCchhccCccEEEc------hhcccchhhcCCC
Confidence            444 9999988775544     46778999999999999876 45555522   1334332      122222  34689


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVK  151 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~  151 (352)
                      +++|||+|.+|+|+|..|++.|.+|+++++.+.++.       ...+.+.+.+. ||++++++.+++++.+ ++.+..|.
T Consensus       175 ~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v~~i~~~-~~~~~~v~  246 (338)
T 3itj_A          175 PLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVALEAKGD-GKLLNALR  246 (338)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEEEEEEES-SSSEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeecceeEEEEcc-cCcEEEEE
Confidence            999999999999999999999999999999887654       23445556555 9999999999999864 34455566


Q ss_pred             cCC-----CCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEe-CCCCCCCCCCEEEeccccccCCccCCcccccccH
Q 018652          152 LED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  224 (352)
Q Consensus       152 ~~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~v-d~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~  224 (352)
                      +.+     ++++++|.||+++|++|++.+++. ++..+ +|++.+ |++++|+.|+|||+|||+..+..         .+
T Consensus       247 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~---------~~  316 (338)
T 3itj_A          247 IKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYR---------QA  316 (338)
T ss_dssp             EEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCC---------CH
T ss_pred             EEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCcc---------ce
Confidence            655     457999999999999999988876 78765 677885 78999999999999999974322         56


Q ss_pred             HHHHHHHHHHHHHHhc
Q 018652          225 DHARQSAQHCIKALLS  240 (352)
Q Consensus       225 ~~A~~~g~~aa~~i~~  240 (352)
                      ..|..+|+.||.+|..
T Consensus       317 ~~A~~~g~~aa~~i~~  332 (338)
T 3itj_A          317 ITSAGSGCMAALDAEK  332 (338)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             eeehhhhHHHHHHHHH
Confidence            6799999999999864

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.95  E-value=6.4e-28  Score=220.33  Aligned_cols=209  Identities=15%  Similarity=0.143  Sum_probs=159.9

Q ss_pred             CCceEEEEC---CCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEE
Q 018652            4 QDPVTSIDI---EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVV   77 (352)
Q Consensus         4 ~~~V~~id~---~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVv   77 (352)
                      ..++..++.   ..++|.+.+|+++.||+||||||++|+ .|++||.+   ..++++.      ..+......+++++||
T Consensus        80 ~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~-~p~i~G~~~~~~~~v~~~------~~~~~~~~~~~~~~VI  152 (304)
T 4fk1_A           80 EKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEE-FPSIPNVREYYGKSLFSC------PYCDGWELKDQPLIII  152 (304)
T ss_dssp             ECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEE-CCSCTTHHHHBTTTEESC------HHHHSGGGTTSCEEEE
T ss_pred             eeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccc-cccccCccccccceeeec------cccchhHhcCCceeee
Confidence            345555543   335888999999999999999999986 45566532   1234332      2233334567888888


Q ss_pred             CCCh-HHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC
Q 018652           78 GGGY-IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS  156 (352)
Q Consensus        78 GgG~-~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~  156 (352)
                      |||. .++|+|..+++.+.+|+++.+.+.+.         +.+.+.+++.|++++.+. +..+.. +++.+..+++++|+
T Consensus       153 ggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~---------~~~~~~l~~~g~~~~~~~-v~~~~~-~~~~~~~v~~~~g~  221 (304)
T 4fk1_A          153 SENEDHTLHMTKLVYNWSTDLVIATNGNELS---------QTIMDELSNKNIPVITES-IRTLQG-EGGYLKKVEFHSGL  221 (304)
T ss_dssp             CCSHHHHHHHHHHHTTTCSCEEEECSSCCCC---------HHHHHHHHTTTCCEECSC-EEEEES-GGGCCCEEEETTSC
T ss_pred             cCCCchhhhHHHHHHhCCceEEEEeccccch---------hhhhhhhhccceeEeeee-EEEeec-CCCeeeeeeccccc
Confidence            8875 56789999999999999998776433         235567888999999764 777764 35566688999999


Q ss_pred             EEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHH
Q 018652          157 TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI  235 (352)
Q Consensus       157 ~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa  235 (352)
                      ++++|.+++++|.+|++.++++++++.+ +|+|.||+++|||+|+|||+|||+..+..         ++..|..+|+.||
T Consensus       222 ~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~---------~~~~A~~~G~~AA  292 (304)
T 4fk1_A          222 RIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS---------SLIIAASQGNKAA  292 (304)
T ss_dssp             EECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCC---------CHHHHHHHHHHHH
T ss_pred             eeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcch---------HHHHHHHHHHHHH
Confidence            9999999999988888788999999876 57799999999999999999999975432         4566889999998


Q ss_pred             HHHh
Q 018652          236 KALL  239 (352)
Q Consensus       236 ~~i~  239 (352)
                      ..|.
T Consensus       293 ~~i~  296 (304)
T 4fk1_A          293 IAIN  296 (304)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.95  E-value=3.1e-27  Score=226.07  Aligned_cols=231  Identities=19%  Similarity=0.176  Sum_probs=166.4

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhh---cCCCeEEEEC
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---EKAKKVVVVG   78 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~---~~~~~vvVvG   78 (352)
                      ++.++|++||+++++|++++|++++||+||||||+++. + .++|.. ++.+.+++.+++.++++.+   ...+.++|+|
T Consensus        73 ~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~-~i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~g  149 (430)
T 3hyw_A           73 FINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-F-GAEGQE-ENSTSICTAEHALETQKKLQELYANPGPVVIG  149 (430)
T ss_dssp             EECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-C-CSBTHH-HHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             EEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-C-CccCcc-cCcCCcccHHHHHHHHHHHHhhccCCceEEEe
Confidence            35678999999999999999999999999999999853 3 345532 3455677888887766544   2455566666


Q ss_pred             CCh------HHHH----HHHHHHhCC----CcEEEEecCCcccc--cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec
Q 018652           79 GGY------IGME----VAAAAVGWK----LDTTIIFPENHLLQ--RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  142 (352)
Q Consensus        79 gG~------~g~e----~A~~l~~~g----~~Vtvv~~~~~~~~--~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~  142 (352)
                      ++.      .+.|    ++..+.+.+    .+|++++..+.+..  ....+...+.+++.++++||++++++.|++++.+
T Consensus       150 g~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~  229 (430)
T 3hyw_A          150 AIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPD  229 (430)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSS
T ss_pred             CCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCC
Confidence            552      2334    344455555    46888887765432  2245677888999999999999999999999742


Q ss_pred             CCCcEEEEEcCCC--CEEEcCEEEEccCCCCCchhhhhcCCc--cc-CCcEEeCCCCC-CCCCCEEEeccccccCCccCC
Q 018652          143 SDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN--SS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYD  216 (352)
Q Consensus       143 ~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~--~~-~g~i~vd~~~~-t~~~~Iya~GD~a~~~~~~~~  216 (352)
                         .+ .+...+|  +++++|.+++++|.+|+ +++..+++.  .+ +|++.||++|| |++|||||+|||+..+.....
T Consensus       230 ---~~-~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~  304 (430)
T 3hyw_A          230 ---KV-IYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKT  304 (430)
T ss_dssp             ---EE-EEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCC
T ss_pred             ---ce-EEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccC
Confidence               21 3333444  47999999999999998 566665543  34 45689999999 799999999999987643211


Q ss_pred             cc--cccccHHHHHHHHHHHHHHHhc
Q 018652          217 RT--ARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       217 ~~--~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ..  ......+.|.+||+.+|+||+.
T Consensus       305 ~~~~~~pk~a~~A~~qg~~~A~Ni~~  330 (430)
T 3hyw_A          305 PIPTGVPKTGMMIEQMAMAVAHNIVN  330 (430)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCcCccchHHHHHHHHHHHHHHHHHH
Confidence            10  1122455699999999999975

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.95  E-value=1.9e-27  Score=222.57  Aligned_cols=223  Identities=18%  Similarity=0.195  Sum_probs=165.1

Q ss_pred             ccCCceEEEECC--CcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            2 IYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         2 ~~~~~V~~id~~--~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      +++++|++|+++  ...|.+.++ .+.||+||+|||+.+.  |.+|+   ..+.+...+.+.     ...++++|+|||+
T Consensus       106 ~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~--p~ip~---~~~~~~~~~~~~-----~~~~~~~vvVvG~  174 (369)
T 3d1c_A          106 FENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF--PKKPF---KYGIHYSEIEDF-----DNFNKGQYVVIGG  174 (369)
T ss_dssp             ECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS--BCCCS---SSCEEGGGCSCG-----GGSCSSEEEEECC
T ss_pred             EeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc--cCCCC---CceechhhcCCh-----hhcCCCEEEEECC
Confidence            467889999976  357777777 5999999999999864  33444   222232211111     1125689999999


Q ss_pred             ChHHHHHHHHHHhCCCcEEEEecCCccccc------ccCHHHHHHHHHHHHhCC-cEEEcCCeEEEEEecCCCcEEEEEc
Q 018652           80 GYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKL  152 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~------~~~~~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~~~~~~~v~~  152 (352)
                      |.+|+|+|..|++.|.+|+++++.+.+++.      .+++...+.+.+.+++.| |++++++.+.+++..+ + ...+.+
T Consensus       175 G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~-~-~~~v~~  252 (369)
T 3d1c_A          175 NESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNN-G-QYHISF  252 (369)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEET-T-EEEEEE
T ss_pred             CcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecC-C-ceEEEe
Confidence            999999999999999999999998876642      245677888999999997 9999999999996432 2 236778


Q ss_pred             CCCCEEE-cCEEEEccCCCCCchhhhhcCCcccCCcEEeCCC-CCCCCCCEEEeccccccCCccCCcccccccHHHHHHH
Q 018652          153 EDGSTID-ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  230 (352)
Q Consensus       153 ~~g~~i~-~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~  230 (352)
                      .+|+++. +|.+|+++|++|+++++.+.+++.++|++.||++ ++|+.|+|||+|||+..+....+      .+..+.+|
T Consensus       253 ~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~~------~~~~~~~~  326 (369)
T 3d1c_A          253 DSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLC------YIYKFRAR  326 (369)
T ss_dssp             SSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCCC------SHHHHGGG
T ss_pred             cCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEeccccccCCeeEE------EEehhhHH
Confidence            8888765 6999999999999877766556544677999975 67899999999999987654322      34457888


Q ss_pred             HHHHHHHHhcCCC
Q 018652          231 AQHCIKALLSAQT  243 (352)
Q Consensus       231 g~~aa~~i~~~~~  243 (352)
                      |+.+|++|.+...
T Consensus       327 a~~~a~~l~~~~~  339 (369)
T 3d1c_A          327 FAVLAHLLTQREG  339 (369)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcccC
Confidence            9999999986543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.95  E-value=7.6e-27  Score=228.45  Aligned_cols=214  Identities=24%  Similarity=0.347  Sum_probs=168.3

Q ss_pred             ccCCceEEEECC-----CcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCe
Q 018652            2 IYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKK   73 (352)
Q Consensus         2 ~~~~~V~~id~~-----~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~   73 (352)
                      +.+++|+.++++     ...|++++|..+.||+||+|||++|+. +.+||..   ..+++++...      ......+++
T Consensus       285 ~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~-~~ipG~~~~~~~~v~~~~~~------~~~~~~~k~  357 (521)
T 1hyu_A          285 IDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN-MNVPGEDQYRTKGVTYCPHC------DGPLFKGKR  357 (521)
T ss_dssp             ECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTTTTTEECCTTC------CGGGGBTSE
T ss_pred             EcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC-CCCCChhhhcCceEEEeecC------chhhcCCCe
Confidence            456799999864     457888899889999999999998864 4456642   2445544321      123457899


Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652           74 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL  152 (352)
Q Consensus        74 vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~  152 (352)
                      ++|||+|++|+|+|..|++.|.+|+++++.+++..   +    ..+.+.+++ .||++++++.++++..+ ++++..+.+
T Consensus       358 V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~~-~~~v~~v~~  429 (521)
T 1hyu_A          358 VAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKGD-GSKVVGLEY  429 (521)
T ss_dssp             EEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEEC-SSSEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEcC-CCcEEEEEE
Confidence            99999999999999999999999999999887653   2    345666777 69999999999999854 445555655


Q ss_pred             C---CCC--EEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHH
Q 018652          153 E---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  226 (352)
Q Consensus       153 ~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~  226 (352)
                      .   +|+  ++++|.|++++|.+||++++++ .++.+ +|+|.||++++|+.|+|||+|||+..+..         .+..
T Consensus       430 ~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~---------~~~~  499 (521)
T 1hyu_A          430 RDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK---------QIII  499 (521)
T ss_dssp             EETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSSC---------CHHH
T ss_pred             EeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeCCCCCCCCCCEEEeecccCCCcc---------eeee
Confidence            4   354  6899999999999999998876 36654 68899999999999999999999986532         5566


Q ss_pred             HHHHHHHHHHHHhc
Q 018652          227 ARQSAQHCIKALLS  240 (352)
Q Consensus       227 A~~~g~~aa~~i~~  240 (352)
                      |+.+|..+|.+|..
T Consensus       500 A~~~g~~aa~~i~~  513 (521)
T 1hyu_A          500 ATGEGAKASLSAFD  513 (521)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHH
Confidence            89999999988863

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.94  E-value=1.9e-26  Score=213.25  Aligned_cols=210  Identities=18%  Similarity=0.313  Sum_probs=157.9

Q ss_pred             ceEEEECCC-cEE-EeCCCeEEecCeEEEccCCCCCCCCCCCCCC---CCcEEEecCHHHHHHHHHhhcCCCeEEEECCC
Q 018652            6 PVTSIDIEK-QTL-ITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEKAKKVVVVGGG   80 (352)
Q Consensus         6 ~V~~id~~~-~~V-~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG   80 (352)
                      +|++++..+ .+| .+++|+.+.||+||+|||+.|.. |.++|..   .++++++.      .....+..+++++|||+|
T Consensus        92 ~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~-~~i~g~~~~~~~~~~~~~------~~~~~~~~~~~v~ViG~G  164 (335)
T 2a87_A           92 DVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARY-LQVPGEQELLGRGVSSCA------TCDGFFFRDQDIAVIGGG  164 (335)
T ss_dssp             CEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECC-CCCTHHHHTBTTTEESCH------HHHGGGGTTCEEEEECSS
T ss_pred             eEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccC-CCCCchHhccCCceEEee------ccchhhcCCCEEEEECCC
Confidence            488898732 467 78888889999999999998763 4455421   13344322      222334578999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CC--
Q 018652           81 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--  155 (352)
Q Consensus        81 ~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g--  155 (352)
                      .+|+|+|..|++.|.+|+++++.+.+..   .+.+   ..+.+++.||++++++.+++++.++  .+..+.+.   +|  
T Consensus       165 ~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~~~~~~~gV~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~  236 (335)
T 2a87_A          165 DSAMEEATFLTRFARSVTLVHRRDEFRA---SKIM---LDRARNNDKIRFLTNHTVVAVDGDT--TVTGLRVRDTNTGAE  236 (335)
T ss_dssp             HHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTH---HHHHHHCTTEEEECSEEEEEEECSS--SCCEEEEEEETTSCC
T ss_pred             HHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHH---HHHHhccCCcEEEeCceeEEEecCC--cEeEEEEEEcCCCce
Confidence            9999999999999999999999876642   2221   2244567899999999999998542  22234443   44  


Q ss_pred             CEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCC-CCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 018652          156 STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH  233 (352)
Q Consensus       156 ~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~  233 (352)
                      +++++|.||+|+|++|++++++ .+++.+ +|+|.||++ ++|+.|+|||+|||+..+..         .+..|..+|+.
T Consensus       237 ~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~---------~~~~A~~~g~~  306 (335)
T 2a87_A          237 TTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYR---------QAVTAAGSGCA  306 (335)
T ss_dssp             EEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCC---------CHHHHHHHHHH
T ss_pred             EEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHH---------HHHHHHHhHHH
Confidence            4799999999999999998876 466655 688999985 68999999999999986422         45568889999


Q ss_pred             HHHHHhc
Q 018652          234 CIKALLS  240 (352)
Q Consensus       234 aa~~i~~  240 (352)
                      +|.+|..
T Consensus       307 aA~~i~~  313 (335)
T 2a87_A          307 AAIDAER  313 (335)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988863

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.5e-26  Score=214.82  Aligned_cols=215  Identities=18%  Similarity=0.263  Sum_probs=152.5

Q ss_pred             ccCCceEEEECCCcE---EEeCCCeEEecCeEEEccCC--CCCCCCCCCCCC-CCcE-EEecCHHHHHHHHHhhcCCCeE
Q 018652            2 IYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LPGV-HYIRDVADADALISSLEKAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~---V~~~~g~~~~yd~lViAtG~--~~~~~~~~~g~~-~~~v-~~~~~~~~~~~~~~~~~~~~~v   74 (352)
                      +++++|++++.+++.   |++++| ++.||+||+|||.  .|+ .|.++|.. ..+. .+.....     ......++++
T Consensus        94 ~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~-~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~v  166 (357)
T 4a9w_A           94 LRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAY-TPEYQGLESFAGIQLHSAHYS-----TPAPFAGMRV  166 (357)
T ss_dssp             ECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBC-CCCCTTGGGCCSEEEEGGGCC-----CSGGGTTSEE
T ss_pred             EcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCC-CCCCCCccccCCcEEEeccCC-----ChhhcCCCEE
Confidence            577899999987765   777777 7999999999996  443 45555532 2221 1111111     1112367999


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecC-Cccccccc-CHHHHHHHHHHHH----------------------------
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQRLF-TPSLAQRYEQLYQ----------------------------  124 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~~~~~~-~~~~~~~l~~~l~----------------------------  124 (352)
                      +|||+|.+|+|+|..|++.+ +|+++.+. +.+++..+ +..+...+.+.+.                            
T Consensus       167 ~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (357)
T 4a9w_A          167 AIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDAR  245 (357)
T ss_dssp             EEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCCHHHHHHH
T ss_pred             EEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHH
Confidence            99999999999999999998 69999987 45554322 2333333333222                            


Q ss_pred             hCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCC--CCCCCCCEE
Q 018652          125 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ--FRTRMPGIF  202 (352)
Q Consensus       125 ~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~--~~t~~~~Iy  202 (352)
                      +.|+ +..+..+.+++..      .+.+.+|+++++|.||+++|++|++++++++++..++|+|.||++  ++|+.|+||
T Consensus       246 ~~g~-i~~~~~v~~~~~~------~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd~~~l~~t~~~~vy  318 (357)
T 4a9w_A          246 ARGV-LAAVPPPARFSPT------GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVW  318 (357)
T ss_dssp             HTTC-CCEECCCSEEETT------EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBCTTSCBBSSCTTEE
T ss_pred             hcCc-eEEecCcceEeCC------eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCccccCCcccCCCCCCeE
Confidence            3444 4445566777632      578899999999999999999999999999999866788999999  899999999


Q ss_pred             Eec--cccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          203 AIG--DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       203 a~G--D~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      |+|  ||+.....         .+..|..+|+.+|++|..
T Consensus       319 a~Gd~d~~~~~~~---------~~~~A~~~g~~~a~~i~~  349 (357)
T 4a9w_A          319 LLGYGDWNGMASA---------TLIGVTRYAREAVRQVTA  349 (357)
T ss_dssp             ECSSCGGGSTTCS---------STTTHHHHHHHHHHHHHH
T ss_pred             Eeccccccccchh---------hhhhhHHHHHHHHHHHHH
Confidence            999  55552211         223388999999999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.93  E-value=1.6e-25  Score=234.49  Aligned_cols=222  Identities=18%  Similarity=0.207  Sum_probs=159.5

Q ss_pred             EEEeCCCeEEecCeEEEccCC-CCCCCCCCCCCC-CCcEEEecCHHHHHHHHHh----------hcCCCeEEEECCChHH
Q 018652           16 TLITNSGKLLKYGSLIVATGC-TASRFPEKIGGY-LPGVHYIRDVADADALISS----------LEKAKKVVVVGGGYIG   83 (352)
Q Consensus        16 ~V~~~~g~~~~yd~lViAtG~-~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~----------~~~~~~vvVvGgG~~g   83 (352)
                      .++++++..+.||+||||||+ .|+.++..+|.. .+++++..++.........          ...+++|+|||||++|
T Consensus       265 ~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g  344 (1025)
T 1gte_A          265 EITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTA  344 (1025)
T ss_dssp             SBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHH
T ss_pred             eEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHH
Confidence            344445555789999999999 476554334432 4677764332211110000          1236799999999999


Q ss_pred             HHHHHHHHhCCC-cEEEEecCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC------CC
Q 018652           84 MEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------DG  155 (352)
Q Consensus        84 ~e~A~~l~~~g~-~Vtvv~~~~~-~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~------~g  155 (352)
                      +|+|..++++|. +||++++.++ +++ .+++++     +.+++.||++++++.+.++..+ ++.+..+++.      +|
T Consensus       345 ~e~A~~~~~~G~~~Vtvv~r~~~~~~~-~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g  417 (1025)
T 1gte_A          345 FDCATSALRCGARRVFLVFRKGFVNIR-AVPEEV-----ELAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETG  417 (1025)
T ss_dssp             HHHHHHHHHTTCSEEEEECSSCGGGCC-SCHHHH-----HHHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTS
T ss_pred             HHHHHHHHHcCCCEEEEEEecChhhCC-CCHHHH-----HHHHHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCC
Confidence            999999999996 8999999873 443 344443     4567889999999999999753 5555555442      23


Q ss_pred             ---------CEEEcCEEEEccCCCCC-chhhhh-cCCccc-CCcEEeCC-CCCCCCCCEEEeccccccCCccCCcccccc
Q 018652          156 ---------STIDADTIVIGIGAKPT-VSPFER-VGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVE  222 (352)
Q Consensus       156 ---------~~i~~D~vi~a~G~~p~-~~~~~~-~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~  222 (352)
                               +++++|.||+++|++|+ ..++.+ .|++.+ +|+|.||+ +++|+.|+|||+|||+..+.          
T Consensus       418 ~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~----------  487 (1025)
T 1gte_A          418 KWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN----------  487 (1025)
T ss_dssp             CEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC----------
T ss_pred             CcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCch----------
Confidence                     36899999999999864 566666 488876 67899997 89999999999999997543          


Q ss_pred             cHHHHHHHHHHHHHHHhc------C-CCCCCCCCCeeee
Q 018652          223 HVDHARQSAQHCIKALLS------A-QTHTYDYLPYFYS  254 (352)
Q Consensus       223 ~~~~A~~~g~~aa~~i~~------~-~~~~~~~~p~~~~  254 (352)
                      .+..|+.+|+.||++|.+      + ....++.+||+|+
T Consensus       488 ~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~  526 (1025)
T 1gte_A          488 TTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYT  526 (1025)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccc
Confidence            344588999999999873      1 2224678999998

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.93  E-value=6.3e-26  Score=230.09  Aligned_cols=231  Identities=15%  Similarity=0.152  Sum_probs=169.3

Q ss_pred             ceEEEECCCcEEEeCCCeEEecCeEEEccCCCCC-------CCCCCCCCC--CCcEEEecCHHHHHHHHHhhcCCCeEEE
Q 018652            6 PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS-------RFPEKIGGY--LPGVHYIRDVADADALISSLEKAKKVVV   76 (352)
Q Consensus         6 ~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~-------~~~~~~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvV   76 (352)
                      .++.++. ++.|+++++..+.||+||||||+.|+       ..+.++|.+  .+++++.   .+.  +......+++|+|
T Consensus       460 ~~v~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~---~~~--l~~~~~~gk~VvV  533 (729)
T 1o94_A          460 ESQLALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTP---EQV--MDGKKKIGKRVVI  533 (729)
T ss_dssp             TCEEECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECH---HHH--HHCCSCCCSEEEE
T ss_pred             CceEEEe-CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEH---HHH--hcCCCCCCCeEEE
Confidence            3555654 34566666667899999999999843       234566655  5566543   222  2233446789999


Q ss_pred             EC--CChHHHHHHHHHHhCCCcEEEEecCCccccc-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC
Q 018652           77 VG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE  153 (352)
Q Consensus        77 vG--gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~  153 (352)
                      ||  ||++|+|+|..|+++|.+||++++.+ ++++ .++.. ...+.+.++++||++++++.+++++.+  +......+.
T Consensus       534 IG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~~~~~~~  609 (729)
T 1o94_A          534 LNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPG--RMEIYNIWG  609 (729)
T ss_dssp             EECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEETT--EEEEEETTC
T ss_pred             EcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEECC--eEEEEEecC
Confidence            98  99999999999999999999999988 6542 13333 467788899999999999999999732  211111123


Q ss_pred             CC-CE------------------EEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCcc
Q 018652          154 DG-ST------------------IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM  214 (352)
Q Consensus       154 ~g-~~------------------i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~  214 (352)
                      ++ ++                  +++|.||+++|.+|++.++++++.       .+|++++|+.|+|||+|||+...   
T Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~-------~vd~~~~t~~~~VyAiGD~~~~~---  679 (729)
T 1o94_A          610 DGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA-------RESEWAENDIKGIYLIGDAEAPR---  679 (729)
T ss_dssp             SCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH-------TGGGTGGGTCCEEEECGGGTSCC---
T ss_pred             CceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh-------hcccccccCCCCeEEEeCccchh---
Confidence            33 33                  999999999999999988765431       26789999999999999998631   


Q ss_pred             CCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCeeeeeccCcCCCCcceeeEEeecC
Q 018652          215 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN  274 (352)
Q Consensus       215 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~  274 (352)
                              .+..|..+|+.+|.+|.+.  ..+..+|| |++++++.       ++++|..
T Consensus       680 --------~~~~A~~~G~~aA~~i~~~--l~~~~~p~-~~~~~~~~-------~~~~~~~  721 (729)
T 1o94_A          680 --------LIADATFTGHRVAREIEEA--NPQIAIPY-KRETIAWG-------TPHMPGG  721 (729)
T ss_dssp             --------CHHHHHHHHHHHHHTTTSS--CTTSCCCC-CCCCCCTT-------CCSSTTC
T ss_pred             --------hHHHHHHHHHHHHHHhhhh--cccCCCCe-eeecccCc-------ccccCCC
Confidence                    5667999999999999753  45677898 78888764       5666643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.92  E-value=1.7e-24  Score=208.92  Aligned_cols=203  Identities=15%  Similarity=0.177  Sum_probs=154.2

Q ss_pred             ccCCceEEEECCCc----EEEeCC---C--eEEecCeEEEccC--CCCCCCCCCCCCCC-Cc-EEEecCHHHHHHHHHhh
Q 018652            2 IYQDPVTSIDIEKQ----TLITNS---G--KLLKYGSLIVATG--CTASRFPEKIGGYL-PG-VHYIRDVADADALISSL   68 (352)
Q Consensus         2 ~~~~~V~~id~~~~----~V~~~~---g--~~~~yd~lViAtG--~~~~~~~~~~g~~~-~~-v~~~~~~~~~~~~~~~~   68 (352)
                      +++++|+.|++.+.    .|++.+   |  .++.||+||+|||  +.|+ .|.++|.+. ++ +.+..++.+.     ..
T Consensus       121 ~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~-~p~ipG~~~~~g~~~hs~~~~~~-----~~  194 (464)
T 2xve_A          121 RFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPY-VPEFEGFEKFGGRILHAHDFRDA-----LE  194 (464)
T ss_dssp             ECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBC-CCCCBTTTTCCSEEEEGGGCCCG-----GG
T ss_pred             EeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCc-cCCCCCcccCCceEEehhhhCCH-----hH
Confidence            46889999987554    777754   4  5789999999999  7775 466676432 44 3332211111     12


Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  148 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~  148 (352)
                      ..+++|+|||+|.+|+|+|..|++.|.+|+++++++.+++..+             ..||+++  ..|++++.+      
T Consensus       195 ~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~~-------------~~~V~~~--~~V~~i~~~------  253 (464)
T 2xve_A          195 FKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKW-------------PENWDER--PNLVRVDTE------  253 (464)
T ss_dssp             GTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCCC-------------CTTEEEC--SCEEEECSS------
T ss_pred             cCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCCC-------------CCceEEc--CCeEEEeCC------
Confidence            3689999999999999999999999999999999887765422             2478887  678888632      


Q ss_pred             EEEcCCCCEEEcCEEEEccCCCCCchhhhh-cCCcccCC-cEEeCC---CCCCCCCCEEEeccccccCCccCCccccccc
Q 018652          149 AVKLEDGSTIDADTIVIGIGAKPTVSPFER-VGLNSSVG-GIQVDG---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEH  223 (352)
Q Consensus       149 ~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~g-~i~vd~---~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~  223 (352)
                      .|.+.||+++++|.||+|+|++|+++++.. +++..+++ .+ ++.   .++|+.|+||++|||+...           .
T Consensus       254 ~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~~~~~~~~~t~~p~i~aiGd~~~~~-----------~  321 (464)
T 2xve_A          254 NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVWEDNPKFFYIGMQDQWY-----------S  321 (464)
T ss_dssp             EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC-SSEETTTEESSSTTEEECSCSCCSS-----------C
T ss_pred             EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCccc-ccccceEecCCCCCEEEEeCccccc-----------c
Confidence            578899999999999999999999998875 67776654 44 342   3568999999999987632           5


Q ss_pred             HHHHHHHHHHHHHHHhcCCC
Q 018652          224 VDHARQSAQHCIKALLSAQT  243 (352)
Q Consensus       224 ~~~A~~~g~~aa~~i~~~~~  243 (352)
                      +..|..||+.+|++|.+...
T Consensus       322 ~~~a~~qa~~~a~~l~G~~~  341 (464)
T 2xve_A          322 FNMFDAQAWYARDVIMGRLP  341 (464)
T ss_dssp             HHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHcCCCC
Confidence            56699999999999987543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.92  E-value=5.2e-25  Score=229.22  Aligned_cols=209  Identities=13%  Similarity=0.158  Sum_probs=162.2

Q ss_pred             ccCCceEEEECCCcEEEe-----------------CCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHH
Q 018652            2 IYQDPVTSIDIEKQTLIT-----------------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL   64 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~-----------------~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~   64 (352)
                      +.+++|++|+.++.....                 .++..+.||+||||||+.|+ .+++||.+.+++++..++.+   +
T Consensus       200 ~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~-~~~ipG~~~~gv~~~~~~~~---~  275 (965)
T 2gag_A          200 LQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHER-PIVFENNDRPGIMLAGAVRS---Y  275 (965)
T ss_dssp             ESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEEC-CCCCBTCCSTTEEEHHHHHH---H
T ss_pred             EeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccC-CCCCCCCCCCCEEEhHHHHH---H
Confidence            356688888876542211                 11236899999999999986 45578888899887654332   2


Q ss_pred             HHh--hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec
Q 018652           65 ISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  142 (352)
Q Consensus        65 ~~~--~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~  142 (352)
                      ...  ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++     .     .+.+++.||++++++.+.++...
T Consensus       276 l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~~~~~v~~i~~~  345 (965)
T 2gag_A          276 LNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVISGSVVVDTEAD  345 (965)
T ss_dssp             HHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEEETEEEEEEEEC
T ss_pred             HHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEEeCCEeEEEecc
Confidence            221  23568999999999999999999999999999999886653     1     45688999999999999999853


Q ss_pred             CCCcEEEEEcCC-------C--CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCC-----CCCCCEEEecccc
Q 018652          143 SDGRVAAVKLED-------G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFR-----TRMPGIFAIGDVA  208 (352)
Q Consensus       143 ~~~~~~~v~~~~-------g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~-----t~~~~Iya~GD~a  208 (352)
                      +++.+..|.+.+       |  +++++|.|++++|.+|+++++...     .+++.+|++++     |+.|+|||+|||+
T Consensus       346 ~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~-----~g~i~vd~~~~~~v~~ts~p~IyAaGD~a  420 (965)
T 2gag_A          346 ENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR-----QGKLDWDTTIHAFVPADAVANQHLAGAMT  420 (965)
T ss_dssp             TTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT-----TCCEEEETTTTEEEECSCCTTEEECGGGG
T ss_pred             CCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC-----CCcEEEcCcccccccCCCCCCEEEEEecC
Confidence            234555566653       5  579999999999999999887654     36899999887     8999999999999


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          209 AFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ..+.           ...|..+|+.+|.+|++
T Consensus       421 ~~~~-----------l~~A~~~G~~aA~~i~~  441 (965)
T 2gag_A          421 GRLD-----------TASALSTGAATGAAAAT  441 (965)
T ss_dssp             TCCS-----------HHHHHHHHHHHHHHHHH
T ss_pred             Cchh-----------HHHHHHHHHHHHHHHHH
Confidence            7642           23699999999999975

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.92  E-value=5.9e-25  Score=211.25  Aligned_cols=198  Identities=23%  Similarity=0.303  Sum_probs=148.2

Q ss_pred             EecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHH--H----------hhcCCCeEEEECCChHHHHHHHHHHh
Q 018652           25 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--S----------SLEKAKKVVVVGGGYIGMEVAAAAVG   92 (352)
Q Consensus        25 ~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~--~----------~~~~~~~vvVvGgG~~g~e~A~~l~~   92 (352)
                      +.||+||||||+.+...+.++|.+.+++++..++.......  .          ....+++|+|||||++|+|+|..+.+
T Consensus       206 ~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r  285 (456)
T 2vdc_G          206 RKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIR  285 (456)
T ss_dssp             SSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHH
T ss_pred             hhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHH
Confidence            67999999999973334567887788887643332221111  1          01357899999999999999999999


Q ss_pred             CCCc-EEEEecCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---------C--------
Q 018652           93 WKLD-TTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---------E--------  153 (352)
Q Consensus        93 ~g~~-Vtvv~~~~~~-~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---------~--------  153 (352)
                      +|.+ |+++++++.. ++. ...+     .+.+++.||++++++.++++..  ++.+..+.+         .        
T Consensus       286 ~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~  357 (456)
T 2vdc_G          286 QGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLGVADATGRQTPQV  357 (456)
T ss_dssp             TTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEEEEEECTTCCEEE
T ss_pred             cCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEecccCCcCCccccc
Confidence            9984 9999998765 442 2222     2456788999999999988874  233211111         1        


Q ss_pred             -CC--CEEEcCEEEEccCCCCCch--hhhhcCCccc-CCcEEeCCC-CCCCCCCEEEeccccccCCccCCcccccccHHH
Q 018652          154 -DG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH  226 (352)
Q Consensus       154 -~g--~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~  226 (352)
                       +|  +++++|.||+++|+.|++.  ++++++++.+ +|+|.||++ ++|+.|+|||+|||+..+.          .+..
T Consensus       358 ~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~----------~v~~  427 (456)
T 2vdc_G          358 IEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGAS----------LVVW  427 (456)
T ss_dssp             EEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCC----------SHHH
T ss_pred             cCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCch----------HHHH
Confidence             23  4699999999999999876  7888888875 688999997 9999999999999987542          4566


Q ss_pred             HHHHHHHHHHHHhc
Q 018652          227 ARQSAQHCIKALLS  240 (352)
Q Consensus       227 A~~~g~~aa~~i~~  240 (352)
                      |+.+|+.+|++|..
T Consensus       428 A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          428 AIRDGRDAAEGIHA  441 (456)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.92  E-value=3.5e-25  Score=213.25  Aligned_cols=204  Identities=18%  Similarity=0.172  Sum_probs=147.5

Q ss_pred             EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHH----HHHHh--hcCCCeEEEECCChHHHHHHHHHH------
Q 018652           24 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD----ALISS--LEKAKKVVVVGGGYIGMEVAAAAV------   91 (352)
Q Consensus        24 ~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~----~~~~~--~~~~~~vvVvGgG~~g~e~A~~l~------   91 (352)
                      .+.||+||||||+.|...|++||.+.+++++.+++....    +....  ...+++++|||+|++|+|+|..|+      
T Consensus        92 ~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l  171 (460)
T 1cjc_A           92 QDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHL  171 (460)
T ss_dssp             HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGG
T ss_pred             eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhh
Confidence            478999999999996345677887788888765442211    00000  115789999999999999999999      


Q ss_pred             --------------hCCC-cEEEEecCCccc--------------cc--------cc----------CHH---HHHHHHH
Q 018652           92 --------------GWKL-DTTIIFPENHLL--------------QR--------LF----------TPS---LAQRYEQ  121 (352)
Q Consensus        92 --------------~~g~-~Vtvv~~~~~~~--------------~~--------~~----------~~~---~~~~l~~  121 (352)
                                    +.+. +|+++.|++.+.              +.        .+          ++.   ..+.+.+
T Consensus       172 ~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  251 (460)
T 1cjc_A          172 EKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLR  251 (460)
T ss_dssp             TTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHH
Confidence                          5676 799999887541              10        00          110   2344445


Q ss_pred             HHHh--------------CCcEEEcCCeEEEEEecCCC-cEEEEEcC---------------CC--CEEEcCEEEEccCC
Q 018652          122 LYQQ--------------NGVKFVKGASIKNLEAGSDG-RVAAVKLE---------------DG--STIDADTIVIGIGA  169 (352)
Q Consensus       122 ~l~~--------------~gV~~~~~~~v~~i~~~~~~-~~~~v~~~---------------~g--~~i~~D~vi~a~G~  169 (352)
                      .+++              .||++++++.+.+|..++++ .+..|++.               +|  ++++||.||+++|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~  331 (460)
T 1cjc_A          252 TATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  331 (460)
T ss_dssp             HHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             HHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCC
Confidence            5555              88999999999999854334 55455443               34  57999999999999


Q ss_pred             CCCchhhhhcCC-ccc-CCcEEeCCCCCCC-CCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          170 KPTVSPFERVGL-NSS-VGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       170 ~p~~~~~~~~gl-~~~-~g~i~vd~~~~t~-~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      +|++ +   .++ +.+ ++++.+|+++||+ .|+|||+|||+..+..         .+..|+.+|..+|.+|++
T Consensus       332 ~p~~-l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~---------~i~~a~~~g~~aa~~i~~  392 (460)
T 1cjc_A          332 KSRP-I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTG---------VITTTMTDSFLTGQILLQ  392 (460)
T ss_dssp             ECCC-C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTC---------CHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCc---------cHHHHHHHHHHHHHHHHH
Confidence            9996 3   566 655 5889999999998 7999999999965432         345688889888888864

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.92  E-value=8.9e-24  Score=177.89  Aligned_cols=153  Identities=22%  Similarity=0.229  Sum_probs=130.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------cc-----CHHHHHHHHHHHHhCCcEEEcCCeEEEE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNL  139 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------~~-----~~~~~~~l~~~l~~~gV~~~~~~~v~~i  139 (352)
                      +++|||||++|+++|..|++.|.+|+++++.+.++.+        .+     ++++.+.+.+.+++.|++++++ +++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            6899999999999999999999999999988765531        12     4688889999999999999999 99999


Q ss_pred             EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCccc
Q 018652          140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA  219 (352)
Q Consensus       140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~  219 (352)
                      +..+++  ..+.+++| ++++|.||+|+|..|+  +++.++++.++|.+.||++++|+.|+|||+|||+..+.+      
T Consensus        82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~~------  150 (180)
T 2ywl_A           82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPT--LPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVPG------  150 (180)
T ss_dssp             EECSSS--EEEECSSC-EEEEEEEEECCTTCCH--HHHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCSC------
T ss_pred             EEcCCE--EEEEECCC-EEEECEEEECCCCCCC--ccccCCCCccCceEEeCCCCCcCCCCEEEeecccCcchh------
Confidence            865333  36778888 8999999999999985  567778877767788999999999999999999987532      


Q ss_pred             ccccHHHHHHHHHHHHHHHhc
Q 018652          220 RVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       220 ~~~~~~~A~~~g~~aa~~i~~  240 (352)
                         ++..|..+|+.+|.||.+
T Consensus       151 ---~~~~A~~~g~~aa~~i~~  168 (180)
T 2ywl_A          151 ---HAIISAGDGAYVAVHLVS  168 (180)
T ss_dssp             ---CHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHhHHHHHHHHHH
Confidence               566799999999999985

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.90  E-value=2e-23  Score=201.41  Aligned_cols=227  Identities=16%  Similarity=0.142  Sum_probs=147.7

Q ss_pred             ccCCceEEEECC---Cc----EEEeCCCe----EEecCeEEEccCCCCCCCCC-CCCCCCC-cEEEecCHHH-HHHHHHh
Q 018652            2 IYQDPVTSIDIE---KQ----TLITNSGK----LLKYGSLIVATGCTASRFPE-KIGGYLP-GVHYIRDVAD-ADALISS   67 (352)
Q Consensus         2 ~~~~~V~~id~~---~~----~V~~~~g~----~~~yd~lViAtG~~~~~~~~-~~g~~~~-~v~~~~~~~~-~~~~~~~   67 (352)
                      +++++|++|+++   ++    .|++.+|.    ++.||+||+|||+.|. .|. ..+.... .+.+.....+ ...+...
T Consensus       145 ~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~p~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (463)
T 3s5w_A          145 RYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPR-IPQVFRALKGDGRVFHHSQYLEHMAKQPCS  223 (463)
T ss_dssp             EESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCEEC-CCGGGGGGTTCTTEEEGGGHHHHHCC----
T ss_pred             EeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCCCC-CcchhhhcCCCCcEEECHHHHhhHHHhhhc
Confidence            467889999876   44    67777765    7999999999999876 343 2221121 3443332222 1122111


Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccccc-------------------cCHHHHHHHHHHHHh-
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL-------------------FTPSLAQRYEQLYQQ-  125 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~~-------------------~~~~~~~~l~~~l~~-  125 (352)
                      ...+++|+|||+|.+|+|+|..|++.  +.+|+++++++.+++..                   +++.....+.+.+.. 
T Consensus       224 ~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~  303 (463)
T 3s5w_A          224 SGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNT  303 (463)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGG
T ss_pred             ccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhcc
Confidence            22589999999999999999999998  89999999998764421                   122222222222222 


Q ss_pred             -------------------------CCcEEEcCCeEEEEEecCCCcEEEEEcC---CCC--EEEcCEEEEccCCCCC--c
Q 018652          126 -------------------------NGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT--V  173 (352)
Q Consensus       126 -------------------------~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~--~  173 (352)
                                               .||++++++.|++++..+++  ..+.+.   +|+  ++++|.||+|+|++|+  .
T Consensus       304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~  381 (463)
T 3s5w_A          304 NYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQG--IELALRDAGSGELSVETYDAVILATGYERQLHR  381 (463)
T ss_dssp             TSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTE--EEEEEEETTTCCEEEEEESEEEECCCEECCC-C
T ss_pred             CCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCE--EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCcc
Confidence                                     59999999999999864332  345554   666  4999999999999999  6


Q ss_pred             hhhhhcCCcccCCcEEeCCCCCCC-----CCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652          174 SPFERVGLNSSVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  238 (352)
Q Consensus       174 ~~~~~~gl~~~~g~i~vd~~~~t~-----~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  238 (352)
                      +++..+....  |++.||+++++.     .|+|||+|||....+.....     .-..|.+++.+++..+
T Consensus       382 ~~l~~l~~~~--g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~~~~~-----l~~~a~r~~~i~~~~~  444 (463)
T 3s5w_A          382 QLLEPLAEYL--GDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTL-----LSVLPVRAEEISGSLY  444 (463)
T ss_dssp             TTTGGGGGGB--C--CCCTTSBCCBCTTBCSEEEESSCCHHHHCTTTTS-----STTHHHHHHHHHHHHH
T ss_pred             chhHHHHHHh--CCcccCcccccccCCCCCCeEEEcCCCcccCCcCccc-----hhHHHHHHHHHHHHHH
Confidence            6776654333  789999999873     46799999998643321111     1123677777665544

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.90  E-value=1.7e-23  Score=201.23  Aligned_cols=207  Identities=18%  Similarity=0.208  Sum_probs=145.6

Q ss_pred             EEeCCCeEEecCeEEEccCCC-CCCCCCCCCCCCCcEEEecCHHHHH----HHHHhh--cCCCeEEEECCChHHHHHHHH
Q 018652           17 LITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADAD----ALISSL--EKAKKVVVVGGGYIGMEVAAA   89 (352)
Q Consensus        17 V~~~~g~~~~yd~lViAtG~~-~~~~~~~~g~~~~~v~~~~~~~~~~----~~~~~~--~~~~~vvVvGgG~~g~e~A~~   89 (352)
                      |+++++ .+.||+||||||+. |+ .+.+||.+.+++++.+++....    .+...+  ..+++++|||+|++|+|+|..
T Consensus        88 v~~~~~-~~~~d~lViAtG~~~~~-~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~  165 (456)
T 1lqt_A           88 VQPGEL-SERYDAVIYAVGAQSDR-MLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARI  165 (456)
T ss_dssp             BCHHHH-HHHSSEEEECCCCCEEC-CCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHH
T ss_pred             EEECCC-eEeCCEEEEeeCCCCCC-CCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHH
Confidence            444444 47999999999997 44 4567887788887765432110    000011  157899999999999999999


Q ss_pred             HHhC--------------------C-CcEEEEecCCcccccccC------------------HHH---------------
Q 018652           90 AVGW--------------------K-LDTTIIFPENHLLQRLFT------------------PSL---------------  115 (352)
Q Consensus        90 l~~~--------------------g-~~Vtvv~~~~~~~~~~~~------------------~~~---------------  115 (352)
                      |++.                    + .+|+++.++..+...+..                  +++               
T Consensus       166 L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (456)
T 1lqt_A          166 LLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVC  245 (456)
T ss_dssp             HHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHH
T ss_pred             HHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHH
Confidence            9974                    5 489999998765432111                  111               


Q ss_pred             ---HHHHHHHHHh------CCcEEEcCCeEEEEEecCCCcEEEEEcC----------------CC--CEEEcCEEEEccC
Q 018652          116 ---AQRYEQLYQQ------NGVKFVKGASIKNLEAGSDGRVAAVKLE----------------DG--STIDADTIVIGIG  168 (352)
Q Consensus       116 ---~~~l~~~l~~------~gV~~~~~~~v~~i~~~~~~~~~~v~~~----------------~g--~~i~~D~vi~a~G  168 (352)
                         .+.+.+.+++      +||++++++.+.++..+  +.+..+++.                +|  ++++||.||+++|
T Consensus       246 ~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G  323 (456)
T 1lqt_A          246 KQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVG  323 (456)
T ss_dssp             HHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSC
T ss_pred             HHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--CcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccc
Confidence               2344454555      79999999999999853  333334432                34  4699999999999


Q ss_pred             CCCCchhhhhcCCccc-CCcEEeCCCCC-CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          169 AKPTVSPFERVGLNSS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       169 ~~p~~~~~~~~gl~~~-~g~i~vd~~~~-t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ++|++ +   .+++.+ ++++.+|+++| |+.|+|||+|||+..+..         .+..|+.+|..+|.+|+.
T Consensus       324 ~~p~~-l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~---------~i~~a~~~g~~~a~~i~~  384 (456)
T 1lqt_A          324 YRGVP-T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTG---------VIGTNKKDAQDTVDTLIK  384 (456)
T ss_dssp             EECCC-C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCS---------CTTHHHHHHHHHHHHHHH
T ss_pred             cccCC-C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCch---------hHHHHHHHHHHHHHHHHH
Confidence            99996 3   355554 57899999999 899999999999975432         223478888888888864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.89  E-value=4.7e-23  Score=200.32  Aligned_cols=187  Identities=17%  Similarity=0.188  Sum_probs=148.7

Q ss_pred             ccCCceEEEECCCcEEEe---CCCe--EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHh--hcCCCeE
Q 018652            2 IYQDPVTSIDIEKQTLIT---NSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS--LEKAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~---~~g~--~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--~~~~~~v   74 (352)
                      +++++|++|+++++.+.+   ++++  .+.||+||||||+.|+ .++++|.+.+++++..   +...+...  ...++++
T Consensus       178 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~-~~~~~g~~~~gv~~~~---~~~~~~~~~~~~~~~~v  253 (493)
T 1y56_A          178 YLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDS-TMLFENNDMPGVFRRD---FALEVMNVWEVAPGRKV  253 (493)
T ss_dssp             ETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEEC-CCCCTTTTSTTEEEHH---HHHHHHHTSCBCSCSEE
T ss_pred             EcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCcc-CCCCCCCCCCCEEEcH---HHHHHHHhcccCCCCEE
Confidence            456788888877764332   4554  6899999999999986 4557888889987753   34444433  2356899


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED  154 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~  154 (352)
                      +|+|+|++|+|                                   +.+++.||++++++.+.++..+  +.+..+.+.+
T Consensus       254 vViGgG~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~~--~~v~~v~~~~  296 (493)
T 1y56_A          254 AVTGSKADEVI-----------------------------------QELERWGIDYVHIPNVKRVEGN--EKVERVIDMN  296 (493)
T ss_dssp             EEESTTHHHHH-----------------------------------HHHHHHTCEEEECSSEEEEECS--SSCCEEEETT
T ss_pred             EEECCCHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEecC--CceEEEEeCC
Confidence            99999999988                                   4567789999999999999843  3344677889


Q ss_pred             CCEEEcCEEEEccCCCCCchhhhhcCCcc---cCCcEE-eCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHH
Q 018652          155 GSTIDADTIVIGIGAKPTVSPFERVGLNS---SVGGIQ-VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS  230 (352)
Q Consensus       155 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~---~~g~i~-vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~  230 (352)
                      |+++++|.||+++|.+|++++++.++++.   ++|++. +|++++ +.|+|||+|||+..+           .+..|..+
T Consensus       297 g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~~-----------~~~~A~~~  364 (493)
T 1y56_A          297 NHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSIK-----------PHYANYLE  364 (493)
T ss_dssp             CCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCCC-----------CHHHHHHH
T ss_pred             CeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCcc-----------CHHHHHHH
Confidence            99999999999999999999999988864   256677 899999 999999999999753           55679999


Q ss_pred             HHHHHHHHhcC
Q 018652          231 AQHCIKALLSA  241 (352)
Q Consensus       231 g~~aa~~i~~~  241 (352)
                      |+.+|.+|.+.
T Consensus       365 g~~aa~~i~~~  375 (493)
T 1y56_A          365 GKLVGAYILKE  375 (493)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.89  E-value=1.3e-23  Score=212.22  Aligned_cols=196  Identities=18%  Similarity=0.132  Sum_probs=147.9

Q ss_pred             eCCCeEEecCeEEEccCCCCCC-------CCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEEC--CChHHHHHHHH
Q 018652           19 TNSGKLLKYGSLIVATGCTASR-------FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG--GGYIGMEVAAA   89 (352)
Q Consensus        19 ~~~g~~~~yd~lViAtG~~~~~-------~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvG--gG~~g~e~A~~   89 (352)
                      .++++.+.||+||+|||+.|+.       .|.++|.+.+++++.   .+  .+......+++++|||  +|++|+|+|..
T Consensus       469 ~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~---~~--~l~~~~~~g~~VvViG~ggG~~g~e~A~~  543 (690)
T 3k30_A          469 GDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGP---DD--LFAGRLPDGKKVVVYDDDHYYLGGVVAEL  543 (690)
T ss_dssp             HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECH---HH--HHTTCCCSSSEEEEEECSCSSHHHHHHHH
T ss_pred             HHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcH---HH--HhCCCCCCCCEEEEEcCCCCccHHHHHHH
Confidence            3344568999999999998541       345566554554432   22  2222345678899999  99999999999


Q ss_pred             HHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652           90 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus        90 l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                      |++.|.+|+++++.+.+++...++.....+.+.+++.||+++++++|++++.+ +..+..+...+++++++|.||+|+|+
T Consensus       544 L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v~~~~~~~~~~i~aD~VV~A~G~  622 (690)
T 3k30_A          544 LAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAG-GVTVRDTYASIERELECDAVVMVTAR  622 (690)
T ss_dssp             HHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETT-EEEEEETTTCCEEEEECSEEEEESCE
T ss_pred             HHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECC-eEEEEEccCCeEEEEECCEEEECCCC
Confidence            99999999999999888775455666788899999999999999999999742 11111111235568999999999999


Q ss_pred             CCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          170 KPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       170 ~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      +|++.+++.++...   .       +|+.|+||++|||+..+           .+..|..+|+.+|.+|.+.
T Consensus       623 ~p~~~l~~~l~~~~---~-------~t~~~~VyaiGD~~~~~-----------~~~~A~~~g~~aa~~i~~~  673 (690)
T 3k30_A          623 LPREELYLDLVARR---D-------AGEIASVRGIGDAWAPG-----------TIAAAVWSGRRAAEEFDAV  673 (690)
T ss_dssp             EECCHHHHHHHHHH---H-------HTSCSEEEECGGGTSCB-----------CHHHHHHHHHHHHHHTTCC
T ss_pred             CCChHHHHHHhhhh---c-------ccCCCCEEEEeCCCchh-----------hHHHHHHHHHHHHHHHHhh
Confidence            99998876643221   1       78999999999999743           4456999999999999854

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.88  E-value=1.2e-22  Score=195.33  Aligned_cols=202  Identities=13%  Similarity=0.120  Sum_probs=147.5

Q ss_pred             ccCCceEEEECCCc--EEEeCC---Ce---EEecCeEEEccCC--CCCCCCCCCCCC-----CCc-EEEecCHHHHHHHH
Q 018652            2 IYQDPVTSIDIEKQ--TLITNS---GK---LLKYGSLIVATGC--TASRFPEKIGGY-----LPG-VHYIRDVADADALI   65 (352)
Q Consensus         2 ~~~~~V~~id~~~~--~V~~~~---g~---~~~yd~lViAtG~--~~~~~~~~~g~~-----~~~-v~~~~~~~~~~~~~   65 (352)
                      +++++|++|+..+.  .|++.+   |+   ++.||+||+|||+  .|+ .|.++|..     .++ +.+..++.+..   
T Consensus       133 ~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~~~~~g~v~~~~~~~~~~---  208 (447)
T 2gv8_A          133 KLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPY-IPNIKGLDEYAKAVPGSVLHSSLFREPE---  208 (447)
T ss_dssp             ECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBC-BCCCBTHHHHHHHSTTSEEEGGGCCCGG---
T ss_pred             EeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCC-CCCCCChhhhhccCCccEEEecccCChh---
Confidence            57889999987654  676655   66   7999999999998  554 45555532     122 44433222211   


Q ss_pred             HhhcCCCeEEEECCChHHHHHHHHHHhCCCc-EEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC
Q 018652           66 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  144 (352)
Q Consensus        66 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~  144 (352)
                        ...+++|+|||+|++|+|+|..|++.+.+ |+++++++.+                +++.||.+  +..|+++..+ +
T Consensus       209 --~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~~-~  267 (447)
T 2gv8_A          209 --LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD----------------IQNESLQQ--VPEITKFDPT-T  267 (447)
T ss_dssp             --GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS----------------CBCSSEEE--ECCEEEEETT-T
T ss_pred             --hcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc----------------CCCCCeEE--ecCeEEEecC-C
Confidence              13689999999999999999999999999 9999988754                34567775  4678888632 2


Q ss_pred             CcEEEEEcCCCCE-EEcCEEEEccCCCCCchh-----hhhc--CCcccCCcEEeCCCCC---CCCCCEEEeccccccCCc
Q 018652          145 GRVAAVKLEDGST-IDADTIVIGIGAKPTVSP-----FERV--GLNSSVGGIQVDGQFR---TRMPGIFAIGDVAAFPLK  213 (352)
Q Consensus       145 ~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~-----~~~~--gl~~~~g~i~vd~~~~---t~~~~Iya~GD~a~~~~~  213 (352)
                      .   .|.+.||+. +++|.||+|+|++|++++     ++++  ++..+ +.+.++.+.+   ++.|+||++||+....  
T Consensus       268 ~---~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~~-~~~~~~~~~~v~~~~~p~l~~~G~~~~~~--  341 (447)
T 2gv8_A          268 R---EIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDD-GSHVHNVYQHIFYIPDPTLAFVGLALHVV--  341 (447)
T ss_dssp             T---EEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCCSS-SSSCCSEETTTEETTCTTEEESSCCBSSC--
T ss_pred             C---EEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCceecC-CCcccccccccccCCCCcEEEEecccccc--
Confidence            2   578889986 799999999999999998     6654  23332 4445554444   6899999999997542  


Q ss_pred             cCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 018652          214 MYDRTARVEHVDHARQSAQHCIKALLSAQT  243 (352)
Q Consensus       214 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  243 (352)
                               .+..|..||+.+|++|.+...
T Consensus       342 ---------~~~~a~~qa~~~a~~~~g~~~  362 (447)
T 2gv8_A          342 ---------PFPTSQAQAAFLARVWSGRLK  362 (447)
T ss_dssp             ---------HHHHHHHHHHHHHHHHTTSSC
T ss_pred             ---------CchHHHHHHHHHHHHHcCCCC
Confidence                     566799999999999986543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.85  E-value=9.4e-21  Score=190.76  Aligned_cols=179  Identities=19%  Similarity=0.208  Sum_probs=137.4

Q ss_pred             E-ecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCC--------
Q 018652           25 L-KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--------   95 (352)
Q Consensus        25 ~-~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~--------   95 (352)
                      + .||+||||||++|+ .|.++|.+.+++++..     +.+......+++|+|||||++|+|+|..|++.|.        
T Consensus       453 ~~~~d~lviAtG~~p~-~~~i~G~~~~~v~~~~-----~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~  526 (671)
T 1ps9_A          453 LQAFDETILASGIVPR-TPPIDGIDHPKVLSYL-----DVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAG  526 (671)
T ss_dssp             SCCSSEEEECCCEEEC-CCCCBTTTSTTEEEHH-----HHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHH
T ss_pred             hhcCCEEEEccCCCcC-CCCCCCCCCCcEeeHH-----HHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhh
Confidence            5 89999999999986 4567776666776542     2222233468999999999999999999998874        


Q ss_pred             -----------------------------cEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCc
Q 018652           96 -----------------------------DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  146 (352)
Q Consensus        96 -----------------------------~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~  146 (352)
                                                   +|+++++.+..+...+++.....+.+.|++.||++++++.+++++.  ++ 
T Consensus       527 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-  603 (671)
T 1ps9_A          527 FCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-  603 (671)
T ss_dssp             HHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TE-
T ss_pred             hhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-
Confidence                                         4566766666565556777778888999999999999999999973  22 


Q ss_pred             EEEEEcCCC--CEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccH
Q 018652          147 VAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  224 (352)
Q Consensus       147 ~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~  224 (352)
                      + .+. .+|  +++++|.||+++|++||+++++.+.               ...++||++|||+.....         .+
T Consensus       604 v-~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l~---------------~~g~~v~aiGD~~~~~~~---------~~  657 (671)
T 1ps9_A          604 L-HVV-INGETQVLAVDNVVICAGQEPNRALAQPLI---------------DSGKTVHLIGGCDVAMEL---------DA  657 (671)
T ss_dssp             E-EEE-ETTEEEEECCSEEEECCCEEECCTTHHHHH---------------TTTCCEEECGGGTCCSSC---------CH
T ss_pred             E-EEe-cCCeEEEEeCCEEEECCCccccHHHHHHHH---------------hcCCCEEEECCcCccCch---------hH
Confidence            1 232 567  5799999999999999988876431               123789999999986432         46


Q ss_pred             HHHHHHHHHHHHHH
Q 018652          225 DHARQSAQHCIKAL  238 (352)
Q Consensus       225 ~~A~~~g~~aa~~i  238 (352)
                      ..|++||..+|++|
T Consensus       658 ~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          658 RRAIAQGTRLALEI  671 (671)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            77999999999885

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.84  E-value=1.6e-20  Score=183.99  Aligned_cols=216  Identities=18%  Similarity=0.256  Sum_probs=146.1

Q ss_pred             ccCCceEEEECCCc----EEEeCCCeEEecCeEEEccC--CCCCCCCCCCCCC-CCcEEEecCHHHHHHHHHhhcCCCeE
Q 018652            2 IYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LPGVHYIRDVADADALISSLEKAKKV   74 (352)
Q Consensus         2 ~~~~~V~~id~~~~----~V~~~~g~~~~yd~lViAtG--~~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~v   74 (352)
                      +++++|++++.++.    .|++++|+++.||+||+|||  +.|+ .|.+||.+ ..+.....    ..........+++|
T Consensus       107 ~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~g~~~~~----~~~~~~~~~~~krV  181 (540)
T 3gwf_A          107 KFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN-FPNLPGLDTFEGETIHT----AAWPEGKSLAGRRV  181 (540)
T ss_dssp             EESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC-CCCCTTGGGCCSEEEEG----GGCCSSCCCTTSEE
T ss_pred             EeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC-CCCCCCccccCCCEEEe----ecCCCccccccceE
Confidence            56889999987655    88899999999999999999  5665 46666643 33321111    10001223468999


Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEecCCcc-ccc---ccCHHHHHHHH------------------------------
Q 018652           75 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-LQR---LFTPSLAQRYE------------------------------  120 (352)
Q Consensus        75 vVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-~~~---~~~~~~~~~l~------------------------------  120 (352)
                      +|||+|.+|+|+|..|++.+.+||+++|.+.+ ++.   .+.+...+.++                              
T Consensus       182 ~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  261 (540)
T 3gwf_A          182 GVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVS  261 (540)
T ss_dssp             EEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSC
T ss_pred             EEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCC
Confidence            99999999999999999999999999999873 321   11222111111                              


Q ss_pred             -------------------------------------------HH---------------------------------HH
Q 018652          121 -------------------------------------------QL---------------------------------YQ  124 (352)
Q Consensus       121 -------------------------------------------~~---------------------------------l~  124 (352)
                                                                 +.                                 +.
T Consensus       262 ~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~  341 (540)
T 3gwf_A          262 EEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYN  341 (540)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGG
T ss_pred             HHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhc
Confidence                                                       00                                 11


Q ss_pred             hCCcEEEc--CCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCC----------
Q 018652          125 QNGVKFVK--GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG----------  192 (352)
Q Consensus       125 ~~gV~~~~--~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~----------  192 (352)
                      +.+|+++.  +..|++|+++      .|.++||+++++|.||+|||+++++.++....+... +++.+++          
T Consensus       342 ~~nV~lv~~~~~~I~~it~~------gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~-~G~~l~~~w~~~~~~y~  414 (540)
T 3gwf_A          342 RPNVEAVAIKENPIREVTAK------GVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGR-DGLHINDHWDGQPTSYL  414 (540)
T ss_dssp             STTEEEEETTTSCEEEECSS------EEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECG-GGCBHHHHTSSSCCCBT
T ss_pred             CCCEEEEeCCCCCccEEecC------eEEcCCCCEEECCEEEECCccCccccCcCcceEECC-CCcCHHHhhccChhhcc
Confidence            45788885  6789999753      688999999999999999999999766665544322 2333332          


Q ss_pred             CCCC-CCCCEEEe-ccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          193 QFRT-RMPGIFAI-GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       193 ~~~t-~~~~Iya~-GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      .+.+ +.||+|.+ |..+...     .     ....+..|++++++.|.
T Consensus       415 g~~v~gfPN~f~~~Gp~~~~~-----s-----~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          415 GVSTANFPNWFMVLGPNGPFT-----N-----LPPSIETQVEWISDTIG  453 (540)
T ss_dssp             TTBCTTCTTEEESSCSSCBCS-----C-----HHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCceEEEecCCCCCc-----c-----HHHHHHHHHHHHHHHHH
Confidence            1222 78999999 7665411     1     22346677888887764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.76  E-value=3.9e-18  Score=167.32  Aligned_cols=104  Identities=20%  Similarity=0.238  Sum_probs=73.8

Q ss_pred             ccCCceEEEECCCc----EEEeCCCeEEecCeEEEccC--CCCCCCCCCCCCC-CCc--EEEecCHHHHHHHH-HhhcCC
Q 018652            2 IYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LPG--VHYIRDVADADALI-SSLEKA   71 (352)
Q Consensus         2 ~~~~~V~~id~~~~----~V~~~~g~~~~yd~lViAtG--~~~~~~~~~~g~~-~~~--v~~~~~~~~~~~~~-~~~~~~   71 (352)
                      +++++|++++.++.    .|++++|+++.||+||+|||  +.|+ .|.+||.+ ..+  +++.+...+..... .....+
T Consensus       107 ~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~-~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~  185 (545)
T 3uox_A          107 RFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR-MPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTG  185 (545)
T ss_dssp             ECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC----CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBT
T ss_pred             EECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc-CCCCCCccccCCCeEEcccccccccccccccccCC
Confidence            57889999987655    88999999999999999999  7775 46666633 233  22211111100000 012368


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ++|+|||+|.+|+|+|..|++.+.+||+++|.+++
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            99999999999999999999999999999998863

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.76  E-value=2.7e-18  Score=168.77  Aligned_cols=216  Identities=17%  Similarity=0.291  Sum_probs=142.2

Q ss_pred             ccCCceEEEECCC----cEEEeCCCeEEecCeEEEccCC--CCCCCCCCCCCC-CCc--EEEecCHHHHHHHHHhhcCCC
Q 018652            2 IYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LPG--VHYIRDVADADALISSLEKAK   72 (352)
Q Consensus         2 ~~~~~V~~id~~~----~~V~~~~g~~~~yd~lViAtG~--~~~~~~~~~g~~-~~~--v~~~~~~~~~~~~~~~~~~~~   72 (352)
                      +++++|++++.++    ..|++++|+++.||+||+|||.  .|+ .|.++|.+ .+|  +++.+...+     .....++
T Consensus       114 ~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~-~p~i~G~~~f~G~~~hs~~~~~~-----~~~~~gk  187 (542)
T 1w4x_A          114 TFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQ-LPNFPGLKDFAGNLYHTGNWPHE-----PVDFSGQ  187 (542)
T ss_dssp             ECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCC-CCCCTTGGGCCSEEEEGGGCCSS-----CCCCBTC
T ss_pred             EcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCCCceEECCCCCCc-----hhccCCC
Confidence            5688999997643    3788889988999999999995  454 45566632 344  222211100     0123689


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-cc---ccCHHHH--------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QR---LFTPSLA--------------------------------  116 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-~~---~~~~~~~--------------------------------  116 (352)
                      +|+|||+|.+|+++|..|++.+.+|+++.|.+.+. ++   .+.+...                                
T Consensus       188 ~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~  267 (542)
T 1w4x_A          188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALE  267 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTT
T ss_pred             EEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhc
Confidence            99999999999999999999999999999886542 21   0111110                                


Q ss_pred             ---------------------------------------HHHHHH-----------------------------------
Q 018652          117 ---------------------------------------QRYEQL-----------------------------------  122 (352)
Q Consensus       117 ---------------------------------------~~l~~~-----------------------------------  122 (352)
                                                             +.+++.                                   
T Consensus       268 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~  347 (542)
T 1w4x_A          268 VSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEM  347 (542)
T ss_dssp             SCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHH
T ss_pred             CCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHH
Confidence                                                   011111                                   


Q ss_pred             HHhCCcEEE--cCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCC-----
Q 018652          123 YQQNGVKFV--KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFR-----  195 (352)
Q Consensus       123 l~~~gV~~~--~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~-----  195 (352)
                      +.+.+|+++  .+..|++++++      .|.++| +++++|.||+|||+++++.++...++... +++.+++.++     
T Consensus       348 ~~~~~v~lv~~~~~~i~~i~~~------gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~-~G~~l~~~w~~~~~~  419 (542)
T 1w4x_A          348 FNRDNVHLVDTLSAPIETITPR------GVRTSE-REYELDSLVLATGFDALTGALFKIDIRGV-GNVALKEKWAAGPRT  419 (542)
T ss_dssp             TTSTTEEEEETTTSCEEEECSS------EEEESS-CEEECSEEEECCCCCCTTHHHHTSEEECG-GGCBHHHHTTTSCCC
T ss_pred             hCCCCEEEEecCCCCceEEcCC------eEEeCC-eEEecCEEEEcCCccccccCcCceeeECC-CCCCHHHhhcCchhe
Confidence            112357776  36678888643      678888 89999999999999998888776555444 3555554322     


Q ss_pred             -----C-CCCCEEEe-ccccccCCccCCcccccccH-HHHHHHHHHHHHHHhc
Q 018652          196 -----T-RMPGIFAI-GDVAAFPLKMYDRTARVEHV-DHARQSAQHCIKALLS  240 (352)
Q Consensus       196 -----t-~~~~Iya~-GD~a~~~~~~~~~~~~~~~~-~~A~~~g~~aa~~i~~  240 (352)
                           . +.||+|++ |+.+..         ..++| ..+.+|++.++++|..
T Consensus       420 y~~~~v~~~Pn~f~~~G~~~~~---------~~~~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          420 YLGLSTAGFPNLFFIAGPGSPS---------ALSNMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             BTTTBCTTSTTEEESSCTTSSG---------GGSCHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccCCCCceEEEcCCCCCc---------ccccHHHHHHHHHHHHHHHHHH
Confidence                 1 45666665 655421         12355 5688899999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.75  E-value=6.7e-18  Score=165.78  Aligned_cols=99  Identities=21%  Similarity=0.203  Sum_probs=75.6

Q ss_pred             ccCCceEEEECCCc----EEEeCCCeEEecCeEEEccC--CCCCCCCCCCCCC-CCcE-EEecCHH-HHHHHHHhhcCCC
Q 018652            2 IYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LPGV-HYIRDVA-DADALISSLEKAK   72 (352)
Q Consensus         2 ~~~~~V~~id~~~~----~V~~~~g~~~~yd~lViAtG--~~~~~~~~~~g~~-~~~v-~~~~~~~-~~~~~~~~~~~~~   72 (352)
                      +++++|++++.++.    .|++++|+++.||+||+|||  +.|. .|.++|.+ ..+. ++..... +.     ....++
T Consensus       119 ~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~g~~~~~~~~~~~~-----~~~~~k  192 (549)
T 4ap3_A          119 RFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN-TPAFDGLDRFTGDIVHTARWPHDG-----VDFTGK  192 (549)
T ss_dssp             ECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC-CCCCTTGGGCCSEEEEGGGCCTTC-----CCCBTC
T ss_pred             EECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCCCceEEeccccccc-----cccCCC
Confidence            57889999987665    88999999999999999999  7775 46666643 3332 2211110 11     123689


Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      +|+|||+|.+|+|+|..|++.+.+||+++|.+++
T Consensus       193 rV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          193 RVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             EEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            9999999999999999999999999999998863

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.70  E-value=3e-16  Score=137.27  Aligned_cols=156  Identities=18%  Similarity=0.247  Sum_probs=112.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc-----------------ccccc------cCHHHHHHHHHHHHhC-C
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-----------------LLQRL------FTPSLAQRYEQLYQQN-G  127 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~-----------------~~~~~------~~~~~~~~l~~~l~~~-g  127 (352)
                      .+|+|||||+.|+++|..|++.|.+|+++++...                 +....      ....+...+.+.+++. |
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999999999998621                 11110      0126677888888887 9


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc--------------------hh---hhhcCCccc
Q 018652          128 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV--------------------SP---FERVGLNSS  184 (352)
Q Consensus       128 V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~--------------------~~---~~~~gl~~~  184 (352)
                      ++++ +++++++..+ ++.+..+.+.+|+++++|.||+|+|..++.                    .+   +.+.++...
T Consensus        84 v~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~  161 (232)
T 2cul_A           84 LHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV  161 (232)
T ss_dssp             EEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred             cEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEE
Confidence            9999 5689999854 455567888889889999999999994432                    22   234444433


Q ss_pred             CCc----------------EEeCC------C-CCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGG----------------IQVDG------Q-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~----------------i~vd~------~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ++.                .....      . ..|++|+||++|||+ ...          .+..|++||+.+|.+|..
T Consensus       162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g----------~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG----------DYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC----------CHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc----------cHHHHHHHHHHHHHHHHh
Confidence            111                00110      1 126899999999999 432          555689999999999974

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.54  E-value=2e-13  Score=132.63  Aligned_cols=206  Identities=17%  Similarity=0.253  Sum_probs=121.8

Q ss_pred             CccCCceEEEECCC----------cEEEeCCC-----eEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHH-HHH
Q 018652            1 MIYQDPVTSIDIEK----------QTLITNSG-----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DAL   64 (352)
Q Consensus         1 ~~~~~~V~~id~~~----------~~V~~~~g-----~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~   64 (352)
                      ++++++|++|.+..          .+|++.++     +++.++.||+|||..|. +|...+. .+.+++-..+.+. +.+
T Consensus       162 vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~-iP~~~~~-~g~v~Hss~y~~~~~~~  239 (501)
T 4b63_A          162 VAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAK-MPSGLPQ-DPRIIHSSKYCTTLPAL  239 (501)
T ss_dssp             EEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEEC-CCTTSCC-CTTEEEGGGHHHHHHHH
T ss_pred             eEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCC-CCCCCCC-Ccceeeccccccchhhc
Confidence            35788999996422          46776543     36899999999998875 4543332 3345544333322 222


Q ss_pred             HHhhcCCCeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCccccc--------ccCHHHHHHH---------------
Q 018652           65 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR--------LFTPSLAQRY---------------  119 (352)
Q Consensus        65 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~--------~~~~~~~~~l---------------  119 (352)
                      ......+|+|+|||+|.+|+|++..|++.  +.+|+++.|++.+.+.        .+.|+..+.+               
T Consensus       240 ~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~  319 (501)
T 4b63_A          240 LKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLAD  319 (501)
T ss_dssp             SCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHT
T ss_pred             cccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHH
Confidence            22235789999999999999999999874  6899999998654321        1222211111               


Q ss_pred             ----------------HHHH-H---------hCCcEEEcCCeEEEEEecCC-CcE-----------EEEEcCCCCEEEcC
Q 018652          120 ----------------EQLY-Q---------QNGVKFVKGASIKNLEAGSD-GRV-----------AAVKLEDGSTIDAD  161 (352)
Q Consensus       120 ----------------~~~l-~---------~~gV~~~~~~~v~~i~~~~~-~~~-----------~~v~~~~g~~i~~D  161 (352)
                                      .+.+ +         .....+..+..+..+..... +.+           ..+.+.+|+++++|
T Consensus       320 ~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D  399 (501)
T 4b63_A          320 KATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVD  399 (501)
T ss_dssp             GGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEES
T ss_pred             HhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECC
Confidence                            1111 0         01235666666666553221 111           13456788999999


Q ss_pred             EEEEccCCCCCch-hh-hhc-CCc-ccCCcEEeCCCCCC--------CCCCEEEecccc
Q 018652          162 TIVIGIGAKPTVS-PF-ERV-GLN-SSVGGIQVDGQFRT--------RMPGIFAIGDVA  208 (352)
Q Consensus       162 ~vi~a~G~~p~~~-~~-~~~-gl~-~~~g~i~vd~~~~t--------~~~~Iya~GD~a  208 (352)
                      .||+|||++|+.. +| ..+ .+. ...|...|+..++.        ..++||+.|-+-
T Consensus       400 ~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~  458 (501)
T 4b63_A          400 ALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNE  458 (501)
T ss_dssp             EEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCH
T ss_pred             EEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCCc
Confidence            9999999998853 22 211 122 23466777765442        246799999543

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.34  E-value=4.1e-12  Score=114.34  Aligned_cols=165  Identities=17%  Similarity=0.180  Sum_probs=111.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEecCCccccc------------------------------------c-cC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR------------------------------------L-FT  112 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~~~------------------------------------~-~~  112 (352)
                      ..+|+|||+|++|+.+|..|++. |.+|+++++.+.+...                                    . ..
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  118 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  118 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence            35799999999999999999997 9999999987654210                                    0 12


Q ss_pred             HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcC---------CC-----CEEEcCEEEEccCCCCCchh--
Q 018652          113 PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE---------DG-----STIDADTIVIGIGAKPTVSP--  175 (352)
Q Consensus       113 ~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~---------~g-----~~i~~D~vi~a~G~~p~~~~--  175 (352)
                      ..+...+.+.+.+ .|+++++++.++++..+ ++.+..+.+.         +|     .++++|.||+|+|..++...  
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence            3444556666655 69999999999999854 4455455442         32     57999999999998876431  


Q ss_pred             ---hhhcC----CcccCCcEEeCC-------CCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          176 ---FERVG----LNSSVGGIQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       176 ---~~~~g----l~~~~g~i~vd~-------~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                         +...+    +... .++.++.       ..+++.|++|++||++...   .+.....+.|..+..+|+.+|.++..
T Consensus       198 ~~~~~~~g~~~~v~~~-~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~  272 (284)
T 1rp0_A          198 VKRLKSIGMIDHVPGM-KALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALK  272 (284)
T ss_dssp             HHHHHHTTSSSCCCCC-EEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccCCCCcCCc-CCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHH
Confidence               22222    1112 2333332       3356779999999987531   11111122566788999999999875

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.16  E-value=9.9e-12  Score=120.60  Aligned_cols=148  Identities=14%  Similarity=0.101  Sum_probs=103.9

Q ss_pred             ecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHH---------HHh--hcCCCeEEEECCChHHHHHHHHHHhCC
Q 018652           26 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL---------ISS--LEKAKKVVVVGGGYIGMEVAAAAVGWK   94 (352)
Q Consensus        26 ~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~---------~~~--~~~~~~vvVvGgG~~g~e~A~~l~~~g   94 (352)
                      .||++++++|++|+. +++++..++++...+...+...+         ...  .....+|+|||||++|+.+|..|++.|
T Consensus        37 ~~~~l~~~~g~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G  115 (497)
T 2bry_A           37 SFQGLCRALGVESGG-GLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLG  115 (497)
T ss_dssp             HHHHHHHHHTCCTTC-HHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCC-CcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCC
Confidence            478899999999753 33333334444444454554443         111  224578999999999999999999999


Q ss_pred             CcEEEEecCCccccc--------------------------------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEec
Q 018652           95 LDTTIIFPENHLLQR--------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG  142 (352)
Q Consensus        95 ~~Vtvv~~~~~~~~~--------------------------------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~  142 (352)
                      .+|+|+++.+.+...                                .....+.+.+.+.+++.|+++++++.++++...
T Consensus       116 ~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~  195 (497)
T 2bry_A          116 ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPP  195 (497)
T ss_dssp             CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECC
T ss_pred             CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe
Confidence            999999987643100                                001456667778888899999999999999853


Q ss_pred             C-CCcEEEEEc--C-CC--CEEEcCEEEEccCCCCCch
Q 018652          143 S-DGRVAAVKL--E-DG--STIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       143 ~-~~~~~~v~~--~-~g--~~i~~D~vi~a~G~~p~~~  174 (352)
                      + ++....|.+  . +|  +++.+|.||+|+|..+...
T Consensus       196 ~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r  233 (497)
T 2bry_A          196 PRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE  233 (497)
T ss_dssp             CSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred             cCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence            1 222234555  4 66  4699999999999987653

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.08  E-value=3.4e-12  Score=123.07  Aligned_cols=212  Identities=15%  Similarity=0.101  Sum_probs=119.5

Q ss_pred             ccCCceEEEECCCcEE---EeC-CCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcC-----C-
Q 018652            2 IYQDPVTSIDIEKQTL---ITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-----A-   71 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V---~~~-~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-----~-   71 (352)
                      +.+++| ++..++..+   .+. ++..+.+|.+|+|||..+..++...+  .++ .+...+.-+.+.-..+..     . 
T Consensus       137 ~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~--~~~-~tGdgi~~a~~aGa~~~d~e~~q~~  212 (472)
T 2e5v_A          137 IEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSST--QST-NIGDGMAIAFKAGTILADMEFVQFH  212 (472)
T ss_dssp             ECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSS--CTT-CSCHHHHHHHHTTCCEECTTCEEEE
T ss_pred             EECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccC--CCC-CchHHHHHHHHcCCCEeCCcceEEE
Confidence            456778 887655543   332 23358899999999998754332111  111 111001111110000111     1 


Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHH--------HHHHHHHHHHhCCcEEEcCCeEEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS--------LAQRYEQLYQQNGVKFVKGASIKNLEAGS  143 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~--------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~  143 (352)
                      ..++++|+|  +++++..++..|..+ +..++++++++ +++.        ++..+.+.+++.|. ++++..  .+    
T Consensus       213 p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~--~~----  281 (472)
T 2e5v_A          213 PTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VFIDLS--KI----  281 (472)
T ss_dssp             EEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECT--TC----
T ss_pred             eEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EEEecc--ch----
Confidence            123455766  888888899999877 77888888865 3333        25666676776663 332211  00    


Q ss_pred             CCcEEEEEcCCCCEEE-cCEEEEccCCCCCchhhhhcCCc-ccCCcEEeCCCCCCCCCCEEEeccccccCCccCCccccc
Q 018652          144 DGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV  221 (352)
Q Consensus       144 ~~~~~~v~~~~g~~i~-~D~vi~a~G~~p~~~~~~~~gl~-~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~  221 (352)
                      +.      +  .+.++ .+.++++.|..|+ ++++-.... ...|+|.||+++||++|+|||+|||+.....  |. .+.
T Consensus       282 ~~------~--~~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~h--g~-~rl  349 (472)
T 2e5v_A          282 ED------F--ERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGLH--GA-NRL  349 (472)
T ss_dssp             TT------H--HHHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSSS--TT-SCC
T ss_pred             HH------H--HHHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhcccccC--CC-CCC
Confidence            00      0  01233 4677888899998 554422111 2358999999999999999999999873211  11 011


Q ss_pred             c--cHHHHHHHHHHHHHHHhc
Q 018652          222 E--HVDHARQSAQHCIKALLS  240 (352)
Q Consensus       222 ~--~~~~A~~~g~~aa~~i~~  240 (352)
                      .  ....+...|+.+++++.+
T Consensus       350 ~~~sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          350 ASNSLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             TTHHHHHHHHHHHHGGGTTTS
T ss_pred             CcccHHHHHHHHHHHHHHHHh
Confidence            1  233455667777777653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.93  E-value=1.5e-08  Score=93.06  Aligned_cols=95  Identities=17%  Similarity=0.164  Sum_probs=77.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc---------------------c-c---------CHHHHHHHH
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------L-F---------TPSLAQRYE  120 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~---------------------~-~---------~~~~~~~l~  120 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                     . .         ...+.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            47999999999999999999999999999987643100                     0 0         057788888


Q ss_pred             HHHHhCCcEEEcCCeEEEEEecCCCcEEE-EEcCCCCEEEcCEEEEccCC
Q 018652          121 QLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       121 ~~l~~~gV~~~~~~~v~~i~~~~~~~~~~-v~~~~g~~i~~D~vi~a~G~  169 (352)
                      +.+++.|++++++++|++++..+ +. .. |.+.+| ++.+|.||+|+|.
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~~-~~-~~~v~~~~g-~~~~d~vV~AtG~  130 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHFG-ER-LRVVARDGR-QWLARAVISATGT  130 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEET-TE-EEEEETTSC-EEEEEEEEECCCS
T ss_pred             HHHHHcCCEEEcCCEEEEEEECC-Cc-EEEEEeCCC-EEEeCEEEECCCC
Confidence            88999999999999999998653 33 34 788887 8999999999996

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.92  E-value=5.4e-09  Score=102.00  Aligned_cols=111  Identities=14%  Similarity=0.293  Sum_probs=87.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------------------------------------ccc---
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------QRL---  110 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------------------------------------~~~---  110 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.                                     ...   
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            3689999999999999999999999999999874320                                     000   


Q ss_pred             ---------------------------c----CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEE
Q 018652          111 ---------------------------F----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID  159 (352)
Q Consensus       111 ---------------------------~----~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~  159 (352)
                                                 .    .+.+.+.+.+.+++.|++++++++|+++... ++.+..|.+.+|+++.
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~G~~i~  265 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSNGEEIK  265 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBEEEEEETTSCEEE
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEECCCCEEE
Confidence                                       0    0345566777888899999999999999864 5566778999999999


Q ss_pred             cCEEEEccCCCCCc--hhhhhcCCc
Q 018652          160 ADTIVIGIGAKPTV--SPFERVGLN  182 (352)
Q Consensus       160 ~D~vi~a~G~~p~~--~~~~~~gl~  182 (352)
                      ||.||+|+|..+..  .++...|+.
T Consensus       266 Ad~VVlA~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          266 SRHVVLAVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             CSCEEECCCTTCHHHHHHHHHTTCC
T ss_pred             CCEEEECCCCChhhHHHHHHHcCCC
Confidence            99999999998853  234555544

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.84  E-value=1.1e-08  Score=93.06  Aligned_cols=100  Identities=18%  Similarity=0.253  Sum_probs=80.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc------------------ccCHHHHHHHHHHHHhCCcEEEcC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------LFTPSLAQRYEQLYQQNGVKFVKG  133 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~------------------~~~~~~~~~l~~~l~~~gV~~~~~  133 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                  ....++...+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            57999999999999999999999999999987643210                  013567778888888899999999


Q ss_pred             CeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC---CCCc
Q 018652          134 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA---KPTV  173 (352)
Q Consensus       134 ~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~---~p~~  173 (352)
                      +.|.+++..+++ ...+.+.+|+ +.+|.+|+|+|.   .|..
T Consensus        88 ~~v~~i~~~~~~-~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~  128 (332)
T 3lzw_A           88 QAVESVEKQADG-VFKLVTNEET-HYSKTVIITAGNGAFKPRK  128 (332)
T ss_dssp             CCEEEEEECTTS-CEEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred             CEEEEEEECCCC-cEEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence            999999865432 3467778876 999999999999   6653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.83  E-value=6e-09  Score=97.67  Aligned_cols=101  Identities=24%  Similarity=0.408  Sum_probs=78.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-cc-cC---------HHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-RL-FT---------PSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-~~-~~---------~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      ..-+|+|||||+.|+.+|..|...+.+|+++++++.+.- +. ++         .++.....+.+++.||+++++++|++
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            456799999999999999999888999999998865321 10 11         11112234667889999999999999


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ++...  +  .|.+++|+++.+|.+|+|||.+|...
T Consensus        88 id~~~--~--~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           88 IDPNN--K--LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             EETTT--T--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EECCC--C--EEEECCCCEEECCEEEEecCCCcCCC
Confidence            98542  2  57789999999999999999988754

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.81  E-value=2.5e-08  Score=94.40  Aligned_cols=100  Identities=22%  Similarity=0.283  Sum_probs=78.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc---------------------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------------------------------------  110 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~---------------------------------------  110 (352)
                      ...+|+|||||..|+.+|..|++.|.+|+|+++.+.+....                                       
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~  105 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD  105 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence            45689999999999999999999999999999876431100                                       


Q ss_pred             ------------------------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEc
Q 018652          111 ------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  166 (352)
Q Consensus       111 ------------------------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  166 (352)
                                              ....+.+.+.+.+++.|++++++++|+++..+++ . ..|.+.+| ++.+|.||+|
T Consensus       106 ~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~-~-~~V~~~~g-~i~ad~VIlA  182 (417)
T 3v76_A          106 FVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS-G-FRVTTSAG-TVDAASLVVA  182 (417)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT-E-EEEEETTE-EEEESEEEEC
T ss_pred             HHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-E-EEEEECCc-EEEeeEEEEC
Confidence                                    0124566677788889999999999999986533 2 46778887 8999999999


Q ss_pred             cCCCCC
Q 018652          167 IGAKPT  172 (352)
Q Consensus       167 ~G~~p~  172 (352)
                      +|..+.
T Consensus       183 tG~~S~  188 (417)
T 3v76_A          183 SGGKSI  188 (417)
T ss_dssp             CCCSSC
T ss_pred             CCCccC
Confidence            998763

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.80  E-value=5.6e-08  Score=89.92  Aligned_cols=99  Identities=15%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------cccCHHHHHHHHHHHHhCCcEEEc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------RLFTPSLAQRYEQLYQQNGVKFVK  132 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------~~~~~~~~~~l~~~l~~~gV~~~~  132 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                  ......+.+.+.+.+++.+++++.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            46899999999999999999999999999998754310                  001256677788888888999999


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          133 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       133 ~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      ++.|+.++..+++. ..|.+.+|+++.+|.+|+|+|..
T Consensus        94 ~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           94 NETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             SCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTC
T ss_pred             CCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCC
Confidence            99999998653333 36778888899999999999984

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.80  E-value=8.2e-09  Score=98.40  Aligned_cols=102  Identities=22%  Similarity=0.331  Sum_probs=78.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHh---CCCcEEEEecCCcccccc----------cCHHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~---~g~~Vtvv~~~~~~~~~~----------~~~~~~~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      -++|+|||||+.|+.+|..|++   .|.+|+|+++++.+....          ...++...+.+.+++.||+++. ..++
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   82 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAE   82 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEE
Confidence            3689999999999999999999   899999999987542110          1112233356777889999985 5899


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                      .++...  .  .|.+++|+++.+|.+|+|+|.+|+...+.
T Consensus        83 ~id~~~--~--~V~~~~g~~i~~d~lviAtG~~~~~~~ip  118 (437)
T 3sx6_A           83 QIDAEA--Q--NITLADGNTVHYDYLMIATGPKLAFENVP  118 (437)
T ss_dssp             EEETTT--T--EEEETTSCEEECSEEEECCCCEECGGGST
T ss_pred             EEEcCC--C--EEEECCCCEEECCEEEECCCCCcCcccCC
Confidence            998542  2  57788998999999999999998755443

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.80  E-value=2e-08  Score=91.62  Aligned_cols=102  Identities=16%  Similarity=0.219  Sum_probs=79.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC----cc------------ccc----ccCHHHHHHHHHHHHhCCcE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL------------LQR----LFTPSLAQRYEQLYQQNGVK  129 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~----~~------------~~~----~~~~~~~~~l~~~l~~~gV~  129 (352)
                      ..++|+|||+|+.|+.+|..|++.|.+|+++++.+    .+            .+.    ...+++...+.+.+++.|++
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  100 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE  100 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence            45789999999999999999999999999999843    11            001    12347778888999999999


Q ss_pred             EEcCCeEEEEEecCCCcEEEEEc---CCCCEEEcCEEEEccCCCCCch
Q 018652          130 FVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       130 ~~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ++.++ +.+++... +.+ .+.+   .++.++.+|.+|+|+|.+|...
T Consensus       101 i~~~~-v~~i~~~~-~~~-~v~~~~~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A          101 IITET-VSKVDLSS-KPF-KLWTEFNEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             EECSC-EEEEECSS-SSE-EEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred             EEEeE-EEEEEEcC-CEE-EEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence            99988 99998543 332 4444   4667899999999999987643

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.79  E-value=3.7e-08  Score=90.06  Aligned_cols=98  Identities=17%  Similarity=0.228  Sum_probs=78.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------cccCHHHHHHHHHHHHhCCcEEEc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------RLFTPSLAQRYEQLYQQNGVKFVK  132 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------~~~~~~~~~~l~~~l~~~gV~~~~  132 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                  .....++...+.+.+++.+++++.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   84 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSL   84 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence            35799999999999999999999999999998754310                  011245667777778888999999


Q ss_pred             CCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          133 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       133 ~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      ++.|..++..++  ...+.+.+|+++.+|.+|+|+|..
T Consensus        85 ~~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           85 GERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             SCCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred             CCEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence            999999986533  345777888889999999999984

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.78  E-value=4e-08  Score=88.79  Aligned_cols=101  Identities=20%  Similarity=0.267  Sum_probs=79.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC--ccc-----------ccccCHHHHHHHHHHHHhCCcEEEcCCeEEEE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  139 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~--~~~-----------~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i  139 (352)
                      +|+|||+|+.|+.+|..|++.|.+|+++++..  ...           +....+.+...+.+.+++.|++++.+++++.+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            68999999999999999999999999997531  110           00112467778888888999999999999999


Q ss_pred             EecCC-CcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          140 EAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       140 ~~~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      +...+ +....+.+.+|+++.+|.+|+|+|..|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            75322 22346778888889999999999998754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.78  E-value=3.7e-08  Score=89.19  Aligned_cols=100  Identities=20%  Similarity=0.301  Sum_probs=79.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC--Cccc--------c---cccCHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL--------Q---RLFTPSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~--~~~~--------~---~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.  ..+.        +   .....++...+.+.+++.|++++. ..+.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            58999999999999999999999999999985  1110        1   112356777888888999999999 88999


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ++..++ . ..+.+.+|+++.+|.+|+|+|..|...
T Consensus        95 i~~~~~-~-~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IENRGD-E-FVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEC---C-EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEecCC-E-EEEEECCCCEEEcCEEEECcCCCCccC
Confidence            986432 2 357788888999999999999987643

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.76  E-value=4.1e-09  Score=100.29  Aligned_cols=97  Identities=25%  Similarity=0.362  Sum_probs=72.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccccccCH----------HHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTP----------SLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~~~~~~----------~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      .|+|+|||||+.|+.+|..|++++  .+||||++++...-...-+          ++...+.+.+++.||+++.+ ++++
T Consensus         2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~   80 (430)
T 3hyw_A            2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES   80 (430)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence            368999999999999999999865  7899999987542111111          11112345567789999976 6999


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      |+.+.  +  .|.+++|+++++|.+|+|+|.++.
T Consensus        81 Id~~~--~--~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           81 IDPDA--N--TVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             EETTT--T--EEEETTCCEEECSEEEECCCCEEE
T ss_pred             EECCC--C--EEEECCCCEEECCEEEEeCCCCcc
Confidence            98542  2  578899999999999999998753

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.75  E-value=2.8e-08  Score=94.22  Aligned_cols=81  Identities=17%  Similarity=0.278  Sum_probs=62.1

Q ss_pred             hCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC--------CCCCchhhhhc--CCcccCCcEEeCCCC
Q 018652          125 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--------AKPTVSPFERV--GLNSSVGGIQVDGQF  194 (352)
Q Consensus       125 ~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G--------~~p~~~~~~~~--gl~~~~g~i~vd~~~  194 (352)
                      +.| +++++++|++|+..+++ + .|.+.+|+++++|.||+++|        +.|+.+..+..  +.......++|+..+
T Consensus       216 ~~g-~i~~~~~V~~i~~~~~~-v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~  292 (431)
T 3k7m_X          216 EIP-EIRLQTVVTGIDQSGDV-V-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILIHV  292 (431)
T ss_dssp             TCS-CEESSCCEEEEECSSSS-E-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEEEE
T ss_pred             hCC-ceEeCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEEEE
Confidence            446 99999999999865433 3 57888898899999999999        88887643321  111223469999999


Q ss_pred             CCCCCCEEEecccc
Q 018652          195 RTRMPGIFAIGDVA  208 (352)
Q Consensus       195 ~t~~~~Iya~GD~a  208 (352)
                      +|+.++||+.||+.
T Consensus       293 ~~~~~~i~~~~d~~  306 (431)
T 3k7m_X          293 RGAEAGIECVGDGI  306 (431)
T ss_dssp             ESCCTTEEEEBSSS
T ss_pred             CCCCcCceEcCCCC
Confidence            99999999999984

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.75  E-value=3.7e-08  Score=88.17  Aligned_cols=99  Identities=12%  Similarity=0.257  Sum_probs=76.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc---------cc---ccCHHHHHHHHHHHHhC-CcEEEcCCeEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------QR---LFTPSLAQRYEQLYQQN-GVKFVKGASIKN  138 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~---------~~---~~~~~~~~~l~~~l~~~-gV~~~~~~~v~~  138 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++++...         +.   ....++...+.+.+++. +++++.+ ++++
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            479999999999999999999999999999753211         00   11235667777777776 7888764 8999


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      ++..+++  ..+.+.+|+++.+|.+|+|+|..|..
T Consensus        82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~  114 (297)
T 3fbs_A           82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDEL  114 (297)
T ss_dssp             EEEETTE--EEEEETTSCEEEEEEEEECCCCEEEC
T ss_pred             EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCC
Confidence            9865332  46788899899999999999998764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.75  E-value=8e-08  Score=89.62  Aligned_cols=97  Identities=21%  Similarity=0.244  Sum_probs=79.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----------------------------------------  109 (352)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+...                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            468999999999999999999999999999987543110                                         


Q ss_pred             --cc-----------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          110 --LF-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 --~~-----------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                        .+           ...+.+.+.+.+.+.|++++.++++++++.  ++   .|++.+|+++.+|.||.|+|..+.
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHH
Confidence              00           034566777888889999999999999985  33   567788989999999999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.74  E-value=4.5e-08  Score=95.87  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=83.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------------------c----------------ccCHH
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------R----------------LFTPS  114 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------------------~----------------~~~~~  114 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++++.+..                    .                ...++
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e  100 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE  100 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence            35799999999999999999999999999998643210                    0                01246


Q ss_pred             HHHHHHHHHHhCCc--EEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC--CCCCc
Q 018652          115 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTV  173 (352)
Q Consensus       115 ~~~~l~~~l~~~gV--~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G--~~p~~  173 (352)
                      +.+.+.+..++.|+  +++++++|++++.+++.....|.+.+|+++.||.||+|+|  .+|..
T Consensus       101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~  163 (549)
T 4ap3_A          101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT  163 (549)
T ss_dssp             HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred             HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence            67788888899998  8999999999986655556678899999999999999999  55653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.73  E-value=5.9e-08  Score=94.87  Aligned_cols=102  Identities=17%  Similarity=0.191  Sum_probs=82.3

Q ss_pred             CeEEEECCChHHHHHHHHHH-hCCCcEEEEecCCcccc--------c----------------------------ccCHH
Q 018652           72 KKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQ--------R----------------------------LFTPS  114 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~-~~g~~Vtvv~~~~~~~~--------~----------------------------~~~~~  114 (352)
                      .+|+|||||+.|+.+|..|+ +.|.+|+|+++.+.+..        .                            ...++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 99999999998653210        0                            01235


Q ss_pred             HHHHHHHHHHhCCc--EEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC--CCCc
Q 018652          115 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTV  173 (352)
Q Consensus       115 ~~~~l~~~l~~~gV--~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~  173 (352)
                      +.+.+.+..++.|+  +++++++|++++.++++....|.+.+|+++.||.||+|+|.  +|..
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~  151 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF  151 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence            67778888888998  89999999999876555556788899999999999999994  5553

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.73  E-value=1.6e-08  Score=95.15  Aligned_cols=101  Identities=22%  Similarity=0.282  Sum_probs=73.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccccccCHHHH---------HHHHHHHHhCCcEEEcCCeEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA---------QRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~~~~~~~~~---------~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      .+|||+|||+|+.|+.+|..|++.+  .+|+||++++........+.+.         ..-.+.+.++||+++.+ +++.
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~   79 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALG   79 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEE
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEE
Confidence            3799999999999999999998865  5899999886532211111110         01123456789999876 6899


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  175 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  175 (352)
                      |++..  +  .+.+.+|+++++|.+|+|+|.+++...
T Consensus        80 id~~~--~--~v~~~~g~~i~yd~LviAtG~~~~~~~  112 (401)
T 3vrd_B           80 IDPDK--K--LVKTAGGAEFAYDRCVVAPGIDLLYDK  112 (401)
T ss_dssp             EETTT--T--EEEETTSCEEECSEEEECCCEEECGGG
T ss_pred             EEccC--c--EEEecccceeecceeeeccCCccccCC
Confidence            98542  2  577899999999999999999887543

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.71  E-value=9.8e-08  Score=89.86  Aligned_cols=99  Identities=11%  Similarity=0.187  Sum_probs=77.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------------c------c---------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------R------L---------------------  110 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------------~------~---------------------  110 (352)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+.+..              .      .                     
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            4799999999999999999999999999998764310              0      0                     


Q ss_pred             ----------------------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecC---CCcEEEEEcCCCCEEEcCEEEE
Q 018652          111 ----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS---DGRVAAVKLEDGSTIDADTIVI  165 (352)
Q Consensus       111 ----------------------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~---~~~~~~v~~~~g~~i~~D~vi~  165 (352)
                                            ....+.+.+.+.+++.|+++++++.++++..++   ++. ..|.+.+| ++.+|.||+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence                                  123455667788888999999999999998541   233 35677776 799999999


Q ss_pred             ccCCCCC
Q 018652          166 GIGAKPT  172 (352)
Q Consensus       166 a~G~~p~  172 (352)
                      |+|..+.
T Consensus       163 AtG~~s~  169 (401)
T 2gqf_A          163 ATGGLSM  169 (401)
T ss_dssp             CCCCSSC
T ss_pred             CCCCccC
Confidence            9999884

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.71  E-value=3.5e-07  Score=87.78  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=77.1

Q ss_pred             CeEEEECCChHHHHHHHHHHh---CCCc---EEEEecCCccccc------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVG---WKLD---TTIIFPENHLLQR------------------------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~---~g~~---Vtvv~~~~~~~~~------------------------------------  109 (352)
                      ++|+|||+|+.|+.+|..|++   .|.+   |+++++.+.+...                                    
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            589999999999999999999   9999   9999987542100                                    


Q ss_pred             -------------c--cCHHHHHHHHHHHHhCCcE--EEcCCeEEEEEecCCCcEEEEEcCC---C--CEEEcCEEEEcc
Q 018652          110 -------------L--FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGI  167 (352)
Q Consensus       110 -------------~--~~~~~~~~l~~~l~~~gV~--~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~  167 (352)
                                   .  ....+.+++.+.+++.|++  +++++.|++++..+++....|++.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence                         0  0134556777777888998  8999999999865443233455543   4  468999999999


Q ss_pred             C--CCCCch
Q 018652          168 G--AKPTVS  174 (352)
Q Consensus       168 G--~~p~~~  174 (352)
                      |  ..|+..
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  677644

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.70  E-value=9.4e-08  Score=86.35  Aligned_cols=100  Identities=10%  Similarity=0.138  Sum_probs=71.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc---cc---------ccccCHHHHHHHHHHHHhCC-cEEEcCCeEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL---------QRLFTPSLAQRYEQLYQQNG-VKFVKGASIKN  138 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~---~~---------~~~~~~~~~~~l~~~l~~~g-V~~~~~~~v~~  138 (352)
                      -.|+|||+|+.|+.+|..|++.|.+|+++++...   +.         +...++++.+...+.+.+.+ +.++ ...+..
T Consensus         7 yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   85 (304)
T 4fk1_A            7 IDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYY-EKTVVM   85 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEE-ECCEEE
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEE-eeEEEE
Confidence            4699999999999999999999999999997531   10         01123455555555555555 4554 445666


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      +...+++. ..+.+.+|+++.+|.||+|||.+|..
T Consensus        86 ~~~~~~~~-~~v~~~~g~~~~a~~liiATGs~p~~  119 (304)
T 4fk1_A           86 ITKQSTGL-FEIVTKDHTKYLAERVLLATGMQEEF  119 (304)
T ss_dssp             EEECTTSC-EEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred             eeecCCCc-EEEEECCCCEEEeCEEEEccCCcccc
Confidence            65443333 46788999999999999999998754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.69  E-value=1.3e-07  Score=85.43  Aligned_cols=98  Identities=16%  Similarity=0.301  Sum_probs=76.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCC-cEEEEecCCc---c--------ccc----ccCHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~---~--------~~~----~~~~~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      +++|||+|+.|+.+|..|++.|. +|+++++...   .        .+.    ...+.+.+.+.+.+++.|++++. .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            69999999999999999999999 9999997521   0        111    11246677788888889999998 789


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      ..++..+ + ...+.+.+|+++.+|.+|+|+|..|..
T Consensus        82 ~~i~~~~-~-~~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           82 QRVSKKD-S-HFVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             EEEEEET-T-EEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEcC-C-EEEEEEcCCCEEECCEEEECCCCCCCC
Confidence            9987543 2 235667888899999999999987764

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.69  E-value=2.1e-08  Score=93.34  Aligned_cols=99  Identities=23%  Similarity=0.325  Sum_probs=73.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-c---------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-R---------LFT-PSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-~---------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      .+.+++|||+|+.|+.+|..|++.| +|+++++++.+.. +         ..+ ..+.....+.+++.||+++.++.++.
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            5789999999999999999999999 9999998764211 0         001 11112234567788999999999999


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      +++.  ..  .|. .+|+++++|.+|+|||.+|...
T Consensus        86 id~~--~~--~V~-~~g~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           86 IDRG--RK--VVI-TEKGEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EETT--TT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred             EECC--CC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence            9753  22  344 5778899999999999988743

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.67  E-value=1.6e-08  Score=95.51  Aligned_cols=98  Identities=21%  Similarity=0.335  Sum_probs=74.4

Q ss_pred             CeEEEECCChHHHHHHHHHHh---CCCcEEEEecCCccccc----------ccCHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQR----------LFTPSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~---~g~~Vtvv~~~~~~~~~----------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      ++|+|||||+.|+++|..|++   .|.+|+|+++++.+...          ....++...+.+.+++.|++++.+ ++++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999999   89999999988754211          011233344667778889999987 8999


Q ss_pred             EEecCCCcEEEEEcCCCC----EEEcCEEEEccCCCCCch
Q 018652          139 LEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~----~i~~D~vi~a~G~~p~~~  174 (352)
                      ++.+  ..  .|.+.+++    ++++|.+|+|+|.+|+..
T Consensus        81 i~~~--~~--~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDAK--SS--MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EETT--TT--EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeCC--CC--EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            9753  22  34555554    399999999999988754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.67  E-value=1.2e-07  Score=86.40  Aligned_cols=99  Identities=22%  Similarity=0.258  Sum_probs=76.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc------------ccc----ccCHHHHHHHHHHHHhCCcEEEcCCe
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------LQR----LFTPSLAQRYEQLYQQNGVKFVKGAS  135 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~------------~~~----~~~~~~~~~l~~~l~~~gV~~~~~~~  135 (352)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.. +            .+.    .....+.+.+.+.+++.|++++. ..
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~   86 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-PGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DE   86 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-CCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-ee
Confidence            579999999999999999999999999999872 1            111    01246677788888899999997 57


Q ss_pred             EEEEEec--CCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          136 IKNLEAG--SDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       136 v~~i~~~--~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      +.+++..  ++. ...+.+.+|+++.+|.+|+|+|..|..
T Consensus        87 v~~i~~~~~~~~-~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           87 VQGVQHDATSHP-YPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             EEEEEECTTSSS-CCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             EEEEEeccCCCc-eEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            8888754  222 124556778899999999999998764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.66  E-value=5.3e-08  Score=91.73  Aligned_cols=99  Identities=24%  Similarity=0.419  Sum_probs=75.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCccc------c-cc-----cCHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL------Q-RL-----FTPSLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~~------~-~~-----~~~~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      .++|+|||+|+.|+.+|..|++.|.  +|+++++++.+.      . ..     ....+.....+.+.+.+++++. +++
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v   79 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRM   79 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCE
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEE
Confidence            3689999999999999999999998  899999876321      0 00     0111122345667889999999 899


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      +.++..  ..  .+.+.+|+++.+|.+|+|||.+|...
T Consensus        80 ~~id~~--~~--~v~~~~g~~~~~d~lvlAtG~~p~~~  113 (404)
T 3fg2_P           80 VSIDRE--GR--KLLLASGTAIEYGHLVLATGARNRML  113 (404)
T ss_dssp             EEEETT--TT--EEEESSSCEEECSEEEECCCEEECCC
T ss_pred             EEEECC--CC--EEEECCCCEEECCEEEEeeCCCccCC
Confidence            999854  22  57788999999999999999987643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.65  E-value=8.9e-08  Score=91.02  Aligned_cols=102  Identities=24%  Similarity=0.431  Sum_probs=76.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCcccc------c-ccC-----HHHHHHHHHHHHhCCcEEEcCCeE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ------R-LFT-----PSLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~~~------~-~~~-----~~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      ..+++|||+|+.|+.+|..|++.|.  +|+++++.+.+..      . .+.     ..+.....+.+++.||+++.++.+
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            4689999999999999999999998  7999997754210      0 000     011111235677889999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                      +.++...  .  .|.+.+|+++++|.+|+|+|.+|....+
T Consensus        84 ~~i~~~~--~--~v~~~~g~~~~~d~lviAtG~~p~~~~i  119 (431)
T 1q1r_A           84 TAINRDR--Q--QVILSDGRALDYDRLVLATGGRPRPLPV  119 (431)
T ss_dssp             EEEETTT--T--EEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred             EEEECCC--C--EEEECCCCEEECCEEEEcCCCCccCCCC
Confidence            9998532  2  5677888899999999999999875443

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.65  E-value=3.1e-07  Score=84.96  Aligned_cols=98  Identities=16%  Similarity=0.260  Sum_probs=75.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC------------ccccc-----------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN------------HLLQR-----------------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~------------~~~~~-----------------------------  109 (352)
                      .+|+|||+|+.|+.+|..|++.|. +|+++++++            +++..                             
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   84 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH   84 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence            479999999999999999999999 999999874            00000                             


Q ss_pred             ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          110 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 ~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      .....+...+.+.+++.|++++.++.|.+++..+++  ..|.+.++ ++.+|.||+|+|..+.
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence            001345566777788899999999999999865333  25666666 5999999999998754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.64  E-value=1e-07  Score=93.23  Aligned_cols=103  Identities=14%  Similarity=0.157  Sum_probs=81.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------------------------c---------cc--cCHH
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------Q---------RL--FTPS  114 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------------------------~---------~~--~~~~  114 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++++.+.                         +         ..  ..++
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~e   88 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPE   88 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHH
Confidence            3579999999999999999999999999999875320                         0         00  1256


Q ss_pred             HHHHHHHHHHhCCc--EEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC--CCCCc
Q 018652          115 LAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTV  173 (352)
Q Consensus       115 ~~~~l~~~l~~~gV--~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G--~~p~~  173 (352)
                      +...+.+..++.++  ++.++++|++++.+++.....|++.+|+++.||.||+|+|  .+|+.
T Consensus        89 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           89 MLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence            77788888888887  7889999999986555455678889999999999999999  56653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.64  E-value=1.6e-07  Score=88.69  Aligned_cols=99  Identities=24%  Similarity=0.436  Sum_probs=75.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCc--EEEEecCCccccc--ccCHHHH---------HHHHHHHHhCCcEEEcCCeEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFPENHLLQR--LFTPSLA---------QRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~--Vtvv~~~~~~~~~--~~~~~~~---------~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      ++++|||+|+.|+.+|..|++.|.+  |+++++.+.+.-.  .+.+.+.         ....+.+++.|++++.+++++.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            5899999999999999999999987  9999987643110  0111110         1123456788999999999999


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ++...  +  .+.+.+|+++.+|.+|+|||.+|...
T Consensus        83 id~~~--~--~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           83 LDVQT--R--TISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             EETTT--T--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EECCC--C--EEEECCCCEEECCEEEEccCCcccCC
Confidence            98542  2  57788999999999999999987643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.64  E-value=1.1e-07  Score=86.82  Aligned_cols=100  Identities=16%  Similarity=0.222  Sum_probs=76.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEec----CCccc------------cc----ccCHHHHHHHHHHHHhCCcEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP----ENHLL------------QR----LFTPSLAQRYEQLYQQNGVKF  130 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~----~~~~~------------~~----~~~~~~~~~l~~~l~~~gV~~  130 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++    ...+.            +.    .....+...+.+.+++.|+++
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~   87 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   87 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEE
Confidence            35799999999999999999999999999998    22110            00    112466777888888999999


Q ss_pred             EcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          131 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       131 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      +.++ +..++...+ . ..|.+ +|+++.+|.+|+|+|..|...
T Consensus        88 ~~~~-v~~i~~~~~-~-~~v~~-~~~~~~~~~vv~A~G~~~~~~  127 (333)
T 1vdc_A           88 FTET-VTKVDFSSK-P-FKLFT-DSKAILADAVILAIGAVAKRL  127 (333)
T ss_dssp             ECCC-CCEEECSSS-S-EEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred             EEeE-EEEEEEcCC-E-EEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence            9987 888875432 2 24666 778899999999999987643

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.62  E-value=3.4e-07  Score=87.40  Aligned_cols=100  Identities=25%  Similarity=0.423  Sum_probs=79.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------------------c----------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------R----------------------  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------~----------------------  109 (352)
                      ..+|+|||||..|+.+|..|++.|.+|+|+++.+.+..                   .                      
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE  105 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence            35799999999999999999999999999997653210                   0                      


Q ss_pred             --------------------cc-----CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEE
Q 018652          110 --------------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV  164 (352)
Q Consensus       110 --------------------~~-----~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi  164 (352)
                                          .+     ...+.+.+.+.+++.||+++++++|+++... ++.+..|.+.+|+++.+|.||
T Consensus       106 ~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VV  184 (447)
T 2i0z_A          106 DIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVV  184 (447)
T ss_dssp             HHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEE
T ss_pred             HHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECCCCEEECCEEE
Confidence                                00     1234456677778899999999999999854 456567888888889999999


Q ss_pred             EccCCCC
Q 018652          165 IGIGAKP  171 (352)
Q Consensus       165 ~a~G~~p  171 (352)
                      +|+|..+
T Consensus       185 lAtGg~s  191 (447)
T 2i0z_A          185 IAVGGKS  191 (447)
T ss_dssp             ECCCCSS
T ss_pred             ECCCCCc
Confidence            9999876

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.62  E-value=2e-07  Score=90.83  Aligned_cols=103  Identities=21%  Similarity=0.277  Sum_probs=80.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC--ccc-----------ccccCHHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~--~~~-----------~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++..  ...           +....+.+...+.+.+++.|++++.+++++
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~  291 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS  291 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            4579999999999999999999999999997531  111           011235677788888899999999999999


Q ss_pred             EEEecCC-CcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          138 NLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       138 ~i~~~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      .++...+ +....|.+.+|+++.+|.+|+|+|.+|..
T Consensus       292 ~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          292 KLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            9974321 22346788889899999999999987753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.59  E-value=1.4e-07  Score=89.20  Aligned_cols=100  Identities=25%  Similarity=0.377  Sum_probs=76.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCc--EEEEecCCccc------c-ccc-----CHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFPENHLL------Q-RLF-----TPSLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~--Vtvv~~~~~~~------~-~~~-----~~~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      .++|+|||+|+.|+.+|..|++.|.+  |+++++.+.+.      . ..+     ...+.....+.+++.+++++.++.+
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   88 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV   88 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence            46899999999999999999999987  99999875421      1 001     1122223356678899999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      +.++..  ..  .+.+.+|+.+.+|.+|+|+|.+|...
T Consensus        89 ~~id~~--~~--~v~~~~g~~~~~d~lvlAtG~~~~~~  122 (415)
T 3lxd_A           89 VSLDPA--AH--TVKLGDGSAIEYGKLIWATGGDPRRL  122 (415)
T ss_dssp             EEEETT--TT--EEEETTSCEEEEEEEEECCCEECCCC
T ss_pred             EEEECC--CC--EEEECCCCEEEeeEEEEccCCccCCC
Confidence            999853  22  56778999999999999999988754

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.59  E-value=2.1e-07  Score=91.55  Aligned_cols=142  Identities=15%  Similarity=0.172  Sum_probs=92.9

Q ss_pred             EEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhc----CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           31 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE----KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        31 ViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~----~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ..|+.+.......+|....++....+...+...+...+.    ....|+|||+|..|+.+|..|++.|.+|+|+++.+.+
T Consensus        77 ~~c~~ch~~~~~~~p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~  156 (566)
T 1qo8_A           77 FYCNECHSFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS  156 (566)
T ss_dssp             CGGGGTCCCCCCCCTTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             chhhhhcCCCcCCCCCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            346666554323344444544444433222222222222    2347999999999999999999999999999976532


Q ss_pred             ccc-----------------------------------------------------------------------------
Q 018652          107 LQR-----------------------------------------------------------------------------  109 (352)
Q Consensus       107 ~~~-----------------------------------------------------------------------------  109 (352)
                      ...                                                                             
T Consensus       157 gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~  236 (566)
T 1qo8_A          157 GGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARV  236 (566)
T ss_dssp             CTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSS
T ss_pred             CCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCC
Confidence            100                                                                             


Q ss_pred             --c--------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC--CCC--EEEcCEEEEccCCCCC
Q 018652          110 --L--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 --~--------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~--~g~--~i~~D~vi~a~G~~p~  172 (352)
                        .        .+..+...+.+.+++.||++++++.++++..++++++..|.+.  +|+  ++.+|.||+|+|....
T Consensus       237 ~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          237 DRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             CCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             CceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence              0        0123445666777889999999999999986543676666554  675  6899999999997553

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.59  E-value=2.6e-07  Score=87.18  Aligned_cols=100  Identities=17%  Similarity=0.211  Sum_probs=78.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc--------ccc----------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------LQR----------------------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~--------~~~----------------------------------  109 (352)
                      .+|+|||||..|+.+|..|++.|.+|+|+++.+.+        .+.                                  
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   85 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA   85 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence            47999999999999999999999999999986310        000                                  


Q ss_pred             ----------------cc-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCC
Q 018652          110 ----------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       110 ----------------~~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~  170 (352)
                                      .+ ...+...+.+.+++.|++++.+++|++++..+++....+.+.+|+  ++.+|.||.|+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~  165 (421)
T 3nix_A           86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG  165 (421)
T ss_dssp             EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred             EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence                            00 124456677777778999999999999986655555567778888  79999999999987


Q ss_pred             C
Q 018652          171 P  171 (352)
Q Consensus       171 p  171 (352)
                      +
T Consensus       166 s  166 (421)
T 3nix_A          166 R  166 (421)
T ss_dssp             C
T ss_pred             h
Confidence            6

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.58  E-value=2.6e-07  Score=83.70  Aligned_cols=99  Identities=19%  Similarity=0.272  Sum_probs=75.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC---cc--------ccc----ccCHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~---~~--------~~~----~~~~~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++..   .+        .+.    ...+.+.+.+.+.+++.|++++.++ +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            579999999999999999999999999998541   00        011    1234667778888899999999986 8


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ..++... +.. .+ +.+++++.+|.+|+|+|..|...
T Consensus        85 ~~i~~~~-~~~-~v-~~~~~~~~~~~lv~AtG~~~~~~  119 (320)
T 1trb_A           85 NKVDLQN-RPF-RL-NGDNGEYTCDALIIATGASARYL  119 (320)
T ss_dssp             EEEECSS-SSE-EE-EESSCEEEEEEEEECCCEEECCC
T ss_pred             eEEEecC-CEE-EE-EeCCCEEEcCEEEECCCCCcCCC
Confidence            8887542 222 34 56778899999999999887643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.56  E-value=2.1e-07  Score=85.15  Aligned_cols=100  Identities=18%  Similarity=0.264  Sum_probs=77.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC---cc--------ccc----ccCHHHHHHHHHHHHhCCcEEEcCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGA  134 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~---~~--------~~~----~~~~~~~~~l~~~l~~~gV~~~~~~  134 (352)
                      ...+++|||+|+.|+.+|..|++.|.+|+++++..   .+        .+.    ...+++...+.+.+++.|++++.++
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~   92 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED   92 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee
Confidence            34689999999999999999999999999998541   00        111    1124667778888888999999987


Q ss_pred             eEEEEEecCCCcEEEE-EcCCCCEEEcCEEEEccCCCCCc
Q 018652          135 SIKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       135 ~v~~i~~~~~~~~~~v-~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                       +..++. .+ . ..+ .+.+|+++.+|.+|+|+|..|..
T Consensus        93 -v~~i~~-~~-~-~~v~~~~~g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           93 -VESVSL-HG-P-LKSVVTADGQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             -EEEEEC-SS-S-SEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             -EEEEEe-CC-c-EEEEEeCCCCEEEeCEEEECCCCCccC
Confidence             888875 22 2 245 67788899999999999998764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.56  E-value=5e-07  Score=84.73  Aligned_cols=100  Identities=15%  Similarity=0.123  Sum_probs=78.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------------------------  108 (352)
                      .+|+|||||..|+.+|..|++.|.+|+|+++.+.+..                                           
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            4799999999999999999999999999997643200                                           


Q ss_pred             --c--------------ccCHHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEE-EEEcCCCCEEEcCEEEEccCCC
Q 018652          109 --R--------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA-AVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       109 --~--------------~~~~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                        .              .....+.+.+.+.+++. |++++.++++++++.+++ .+. .+++.+|+++++|.||.|+|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER-HAIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC-ceEEEEEECCCCEEECCEEEECCCCC
Confidence              0              00124456666777777 999999999999986544 332 5778889899999999999987


Q ss_pred             CC
Q 018652          171 PT  172 (352)
Q Consensus       171 p~  172 (352)
                      ..
T Consensus       166 s~  167 (399)
T 2x3n_A          166 SY  167 (399)
T ss_dssp             CH
T ss_pred             hH
Confidence            64

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.55  E-value=3.5e-07  Score=82.57  Aligned_cols=100  Identities=14%  Similarity=0.161  Sum_probs=75.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc----c----c------------ccccCHHHHHHHHHHHHhCCcEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----L----L------------QRLFTPSLAQRYEQLYQQNGVKFV  131 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~----~----~------------~~~~~~~~~~~l~~~l~~~gV~~~  131 (352)
                      ..|+|||+|+.|+.+|..|+++|.+|+++++...    +    .            ....++++...+.+.+++.++++.
T Consensus         5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~   84 (314)
T 4a5l_A            5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII   84 (314)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence            4699999999999999999999999999987531    0    0            001224667778888899999988


Q ss_pred             cCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          132 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       132 ~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ... +.......+.  ..+.+.++.++.+|.+|+|||.+|...
T Consensus        85 ~~~-v~~~~~~~~~--~~~~~~~~~~~~~~~liiATG~~~~~~  124 (314)
T 4a5l_A           85 TET-IDHVDFSTQP--FKLFTEEGKEVLTKSVIIATGATAKRM  124 (314)
T ss_dssp             CCC-EEEEECSSSS--EEEEETTCCEEEEEEEEECCCEEECCC
T ss_pred             EeE-EEEeecCCCc--eEEEECCCeEEEEeEEEEccccccccc
Confidence            654 5555433222  356678888999999999999987643

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.53  E-value=1.8e-07  Score=89.48  Aligned_cols=101  Identities=14%  Similarity=0.235  Sum_probs=73.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCccc--c----cccCHH------HHHHHHHHHHhCCcEEEcCCeEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL--Q----RLFTPS------LAQRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~--~----~~~~~~------~~~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      ++|+|||||+.|+.+|..|++.  |.+|+++++++.+.  +    ......      +.....+.+++.|++++.++++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5899999999999999999998  89999999887542  0    001111      11113466788999999999999


Q ss_pred             EEEecCCCcEEEEE-cCCCCEEEcCEEEEccCCCCCch
Q 018652          138 NLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       138 ~i~~~~~~~~~~v~-~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      +++.. +.. ..+. ..+++++.+|.+|+|+|.+|...
T Consensus        83 ~id~~-~~~-v~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDVE-NQL-IAWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEETT-TTE-EEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEECC-CCE-EEEEecCceEEEEcCEEEECCCcccCCC
Confidence            99854 222 2332 23556899999999999998754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.53  E-value=3.3e-07  Score=87.44  Aligned_cols=102  Identities=19%  Similarity=0.195  Sum_probs=75.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCcccc----c---------------------------------c
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ----R---------------------------------L  110 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~~~----~---------------------------------~  110 (352)
                      ...+|+|||+|+.|+.+|..|++.|.  +|+++++.+.+..    .                                 .
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            45789999999999999999999999  9999998743200    0                                 0


Q ss_pred             --------------c--------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---CC---
Q 018652          111 --------------F--------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS---  156 (352)
Q Consensus       111 --------------~--------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g~---  156 (352)
                                    +              ...+.+++.+..++.++.++++++|++++..+ +. ..|++.+   |+   
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~-~~-~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD-GS-WVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET-TE-EEEEEEESSTTCCEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC-Ce-EEEEEeecCCCCeeE
Confidence                          0              01445666666666678899999999998643 32 2455544   66   


Q ss_pred             EEEcCEEEEccCC--CCCc
Q 018652          157 TIDADTIVIGIGA--KPTV  173 (352)
Q Consensus       157 ~i~~D~vi~a~G~--~p~~  173 (352)
                      ++.+|.||+|+|.  .|+.
T Consensus       163 ~~~~d~VVvAtG~~s~p~~  181 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYI  181 (447)
T ss_dssp             EEEESEEEECCCSSSSBCB
T ss_pred             EEEeCEEEECCCCCCCCCC
Confidence            7999999999998  6654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.52  E-value=1.9e-07  Score=89.17  Aligned_cols=100  Identities=23%  Similarity=0.395  Sum_probs=70.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCccc------cccc-----CHHHHHHHHHHH-HhCCcEEEcCCeE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL------QRLF-----TPSLAQRYEQLY-QQNGVKFVKGASI  136 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~------~~~~-----~~~~~~~l~~~l-~~~gV~~~~~~~v  136 (352)
                      .++|+|||||+.|+.+|..|++.  +.+|+++++.+.+.      +..+     ...+.....+.+ ++.|++++.++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            46899999999999999999997  78999999887431      1000     011112222333 6789999999999


Q ss_pred             EEEEecCCCcEEEEEcCCC-CEEEcCEEEEccCCCCCch
Q 018652          137 KNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~~  174 (352)
                      ..++..  .  ..+.+.++ .++.+|.+|+|||.+|...
T Consensus        83 ~~i~~~--~--~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           83 IEVDTG--Y--VRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             EEECSS--E--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             EEEecC--C--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            999642  1  35667777 4799999999999988644

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.52  E-value=5.2e-07  Score=81.85  Aligned_cols=99  Identities=15%  Similarity=0.178  Sum_probs=75.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc---c--------ccc---ccCHHHHHHHHHHHHhCCcEEEcCCeE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR---LFTPSLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~---~--------~~~---~~~~~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++...   .        .+.   .....+...+.+.+++.|++++. ..+
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v   94 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEV   94 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeE
Confidence            46899999999999999999999999999997421   0        111   11245667777888889999998 678


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      ..++...+ . ..|.+ +++++.+|.+|+|+|..|..
T Consensus        95 ~~i~~~~~-~-~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           95 RSIKKTQG-G-FDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEEEEETT-E-EEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             EEEEEeCC-E-EEEEE-CCCEEEeCEEEECCCCCccc
Confidence            88875422 2 23555 56789999999999987764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.51  E-value=4.1e-07  Score=82.02  Aligned_cols=99  Identities=15%  Similarity=0.195  Sum_probs=74.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEE-EecCCcc------------ccc----ccCHHHHHHHHHHHHhCCcEEEcC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPENHL------------LQR----LFTPSLAQRYEQLYQQNGVKFVKG  133 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtv-v~~~~~~------------~~~----~~~~~~~~~l~~~l~~~gV~~~~~  133 (352)
                      .++|+|||+|+.|+.+|..|++.|.+|++ +++. .+            .+.    ....++...+.+.+++.|++++.+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence            46899999999999999999999999999 8873 21            011    112467788888889999999988


Q ss_pred             CeEEEEEecCC-CcEEEE-EcCCCCEEEcCEEEEccCCCCCch
Q 018652          134 ASIKNLEAGSD-GRVAAV-KLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       134 ~~v~~i~~~~~-~~~~~v-~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                       .+.++ .+++ +. ..+ ...++ ++.+|.+|+|+|.+|+..
T Consensus        83 -~v~~i-~~~~~~~-~~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           83 -GVEQI-LKNSDGS-FTIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             -CEEEE-EECTTSC-EEEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             -EEEEE-ecCCCCc-EEEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence             78888 4331 22 232 22344 899999999999987643

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.50  E-value=3.3e-07  Score=90.60  Aligned_cols=103  Identities=19%  Similarity=0.272  Sum_probs=76.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCccc----------cccc-C--HHHHHHHHHHHHhCCcEEEcCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL----------QRLF-T--PSLAQRYEQLYQQNGVKFVKGA  134 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~----------~~~~-~--~~~~~~l~~~l~~~gV~~~~~~  134 (352)
                      ..++|+|||||+.|+.+|..|++.  |.+|+++++++.+.          ...+ .  ..+...+....++.|+++++++
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            457899999999999999999998  89999999987531          0000 1  1122345566678899999999


Q ss_pred             eEEEEEecCCCcEEEEE-cCCCC--EEEcCEEEEccCCCCCch
Q 018652          135 SIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       135 ~v~~i~~~~~~~~~~v~-~~~g~--~i~~D~vi~a~G~~p~~~  174 (352)
                      .+++++.. +..+ .+. +.+|+  ++.+|.+|+|+|.+|...
T Consensus       115 ~V~~id~~-~~~v-~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (588)
T 3ics_A          115 EVVKINKE-EKTI-TIKNVTTNETYNEAYDVLILSPGAKPIVP  155 (588)
T ss_dssp             EEEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEEECC-CCEE-EEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence            99999853 3333 333 34666  789999999999987643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.49  E-value=5.6e-07  Score=84.41  Aligned_cols=100  Identities=16%  Similarity=0.264  Sum_probs=74.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----ccCHHHHH----------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQ----------------------------  117 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~~~~~~~~----------------------------  117 (352)
                      ..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+...     .+.+...+                            
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            468999999999999999999999999999987543111     01222111                            


Q ss_pred             ---------------HHHHHHHh--CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          118 ---------------RYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       118 ---------------~l~~~l~~--~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                                     .+.+.|.+  .|+++++++++++++.++++  ..+++.+|+++.+|.||.|.|....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE--EEEEECCCCEEECCEEEECCCcchh
Confidence                           12222222  37899999999999865443  3578889999999999999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.49  E-value=8.8e-07  Score=80.08  Aligned_cols=99  Identities=19%  Similarity=0.223  Sum_probs=74.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc---cc-----------ccccCHHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~---~~-----------~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      -.|+|||+|+.|+.+|..|+++|.+|+++++...   ++           .....+++.........+.+..+..+....
T Consensus         7 yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (312)
T 4gcm_A            7 FDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKS   86 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeee
Confidence            4699999999999999999999999999987521   11           011235666677777888888888877666


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ..... ..   .+...+++++.+|.+|+|||.+|...
T Consensus        87 ~~~~~-~~---~~~~~~~~~~~~d~liiAtGs~~~~~  119 (312)
T 4gcm_A           87 VEDKG-EY---KVINFGNKELTAKAVIIATGAEYKKI  119 (312)
T ss_dssp             EEECS-SC---EEEECSSCEEEEEEEEECCCEEECCC
T ss_pred             eeeee-cc---eeeccCCeEEEeceeEEcccCccCcC
Confidence            55432 21   34556778999999999999988643

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.49  E-value=1e-06  Score=86.74  Aligned_cols=101  Identities=17%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----------------------------------------  109 (352)
                      ..+|+|||+|..|+.+|..|++.|.+|+|+++.+.+...                                         
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND  205 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            357999999999999999999999999999976532100                                         


Q ss_pred             ----------------------------------------------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecC
Q 018652          110 ----------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  143 (352)
Q Consensus       110 ----------------------------------------------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~  143 (352)
                                                                    ..+..+...+.+.+++.||+++++++++++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~  285 (571)
T 1y0p_A          206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD  285 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC
Confidence                                                          0012344566677788999999999999998654


Q ss_pred             CCcEEEEEcC--CCC--EEEcCEEEEccCCCC
Q 018652          144 DGRVAAVKLE--DGS--TIDADTIVIGIGAKP  171 (352)
Q Consensus       144 ~~~~~~v~~~--~g~--~i~~D~vi~a~G~~p  171 (352)
                      ++++..|...  +|+  ++.+|.||+|+|...
T Consensus       286 ~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          286 KGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             TSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             CCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            4666656554  675  689999999999754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.48  E-value=3.9e-07  Score=85.96  Aligned_cols=101  Identities=22%  Similarity=0.299  Sum_probs=74.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCccc-cc-ccCHHHH-HHH-H----HHHHhCCcEEEcCCeEEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL-QR-LFTPSLA-QRY-E----QLYQQNGVKFVKGASIKNL  139 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~~-~~-~~~~~~~-~~l-~----~~l~~~gV~~~~~~~v~~i  139 (352)
                      ...+++|||+|+.|+.+|..|++.|.  +|+++++.+.+. .+ .+.+.+. ... .    +.+++.|++++.+++++.+
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   85 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   85 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEE
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEE
Confidence            34689999999999999999999987  499999876532 11 0111111 000 0    0356779999999999999


Q ss_pred             EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      +..  ..  .|.+.+|+++++|.+|+|+|.+|...
T Consensus        86 ~~~--~~--~v~~~~g~~~~~d~lviAtG~~~~~~  116 (408)
T 2gqw_A           86 DPQ--AH--TVALSDGRTLPYGTLVLATGAAPRAL  116 (408)
T ss_dssp             ETT--TT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             ECC--CC--EEEECCCCEEECCEEEECCCCCCCCC
Confidence            753  22  56778888999999999999988754

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.47  E-value=1e-06  Score=81.13  Aligned_cols=65  Identities=14%  Similarity=0.273  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCchhhhhc-CC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV-GL  181 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~-gl  181 (352)
                      +...+.+.+++.|++++++++|+++...+++.+ .|.+.+|  .++.+|.||+|+|.... .+++.+ |+
T Consensus       152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~  219 (369)
T 3dme_A          152 LMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGI  219 (369)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETS
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcchH-HHHHHhcCC
Confidence            344566677889999999999999987544433 5778887  47999999999998643 455555 54

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.47  E-value=2.7e-07  Score=88.37  Aligned_cols=103  Identities=14%  Similarity=0.156  Sum_probs=76.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC-----CcEEEEecCCccccc-------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHLLQR-------------------------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g-----~~Vtvv~~~~~~~~~-------------------------------------  109 (352)
                      .+|+|||+|+.|+.+|..|++.|     .+|+++++.+.+...                                     
T Consensus        31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~  110 (463)
T 3s5w_A           31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKH  110 (463)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHT
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhc
Confidence            37999999999999999999999     999999987632100                                     


Q ss_pred             -----------c--cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC-CcE--EEEEcCCCC----EEEcCEEEEccCC
Q 018652          110 -----------L--FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRV--AAVKLEDGS----TIDADTIVIGIGA  169 (352)
Q Consensus       110 -----------~--~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~-~~~--~~v~~~~g~----~i~~D~vi~a~G~  169 (352)
                                 .  ...++.+++....++.+++++++++|++++..++ +..  ..|.+.+|+    ++.+|.||+|+|.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          111 DRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             TCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             CceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence                       0  0134445556666667899999999999976421 222  256666665    8999999999999


Q ss_pred             CCCch
Q 018652          170 KPTVS  174 (352)
Q Consensus       170 ~p~~~  174 (352)
                      .|..+
T Consensus       191 ~p~~p  195 (463)
T 3s5w_A          191 TPRIP  195 (463)
T ss_dssp             EECCC
T ss_pred             CCCCc
Confidence            87644

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.47  E-value=9.4e-07  Score=82.65  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=76.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc------cccc-----------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------LQRL-----------------------------------  110 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~------~~~~-----------------------------------  110 (352)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+..      ....                                   
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            46999999999999999999999999999987531      0000                                   


Q ss_pred             -----------------cC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-CCCC--EEEcCEEEEccCC
Q 018652          111 -----------------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA  169 (352)
Q Consensus       111 -----------------~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~  169 (352)
                                       ++ +.+.+.+.+.+.+.|++++.++++++++..+++.+ .|.+ .+|+  ++.+|+||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence                             01 23445566667778999999999999985433332 4565 6786  7999999999998


Q ss_pred             CCCc
Q 018652          170 KPTV  173 (352)
Q Consensus       170 ~p~~  173 (352)
                      ....
T Consensus       162 ~S~v  165 (394)
T 1k0i_A          162 HGIS  165 (394)
T ss_dssp             TCST
T ss_pred             CcHH
Confidence            7654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.46  E-value=2.8e-06  Score=83.04  Aligned_cols=101  Identities=15%  Similarity=0.196  Sum_probs=77.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------c------------ccc----------------CHHH
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------Q------------RLF----------------TPSL  115 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------~------------~~~----------------~~~~  115 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++++.+.        +            ..+                .+++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            479999999999999999999999999999865320        0            000                1234


Q ss_pred             HHHHHHHHHhCC--cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC--CCC
Q 018652          116 AQRYEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPT  172 (352)
Q Consensus       116 ~~~l~~~l~~~g--V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~  172 (352)
                      .+++....++.+  ++++++++|++++.+++.....|.+.+|+++.+|.||+|+|.  .|.
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~  157 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQ  157 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCC
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCC
Confidence            556666666665  678899999999865544445788889989999999999995  454

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.46  E-value=5.4e-07  Score=86.58  Aligned_cols=102  Identities=20%  Similarity=0.296  Sum_probs=64.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcc------cccccCH------H-------HHHHHHHHHHhCCcE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL------LQRLFTP------S-------LAQRYEQLYQQNGVK  129 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~------~~~~~~~------~-------~~~~l~~~l~~~gV~  129 (352)
                      .++|+|||+|+.|+.+|..|++.  |.+|+++++++.+      ++..+..      .       +........++.|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            36899999999999999999998  8999999998763      1111111      1       111222222357999


Q ss_pred             EEcCCeEEEEEecCCCcEEEEE-cCCCC--EEEcCEEEEccCCCCCch
Q 018652          130 FVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       130 ~~~~~~v~~i~~~~~~~~~~v~-~~~g~--~i~~D~vi~a~G~~p~~~  174 (352)
                      ++.++++++++.. +..+ .+. +.+|+  .+.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~V~~id~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           83 ALVETRAHAIDRA-AHTV-EIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             EECSEEEEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEECCEEEEEECC-CCEE-EEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            9999999999853 3332 333 34465  799999999999987643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.43  E-value=1.1e-06  Score=81.58  Aligned_cols=63  Identities=16%  Similarity=0.290  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcC
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  180 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g  180 (352)
                      .+...+.+.+++.|++++.+++|+++... ++.+ .|.+.+| ++.+|.||+|+|.... .++...+
T Consensus       165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~-~l~~~~~  227 (382)
T 1ryi_A          165 FVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG-MFFKQLG  227 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH-HHHHHTT
T ss_pred             HHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH-HHHHhcC
Confidence            35566777788899999999999999854 3444 6777777 7999999999998653 3454444

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.42  E-value=1.4e-06  Score=84.23  Aligned_cols=51  Identities=24%  Similarity=0.373  Sum_probs=42.2

Q ss_pred             HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      +.+.+++.|++++++++|++|... ++++..|+++||+++.+|.||++++..
T Consensus       227 L~~~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          227 MIKLFQDLGGEVVLNARVSHMETT-GNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             HHHHHHHhCCceeeecceeEEEee-CCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            345567889999999999999864 677888999999999999999987654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.41  E-value=1.7e-06  Score=81.00  Aligned_cols=99  Identities=15%  Similarity=0.153  Sum_probs=71.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc------ccCHHHH------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLA------------------------------  116 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~------~~~~~~~------------------------------  116 (352)
                      +|+|||+|+.|+-+|..|++.|.+|+|+++.+.+...      .+.+...                              
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   82 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN   82 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence            7999999999999999999999999999976433111      0111110                              


Q ss_pred             -----------------------------HHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEc
Q 018652          117 -----------------------------QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  166 (352)
Q Consensus       117 -----------------------------~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  166 (352)
                                                   ..+.+.|.+ .+..+++++++++++..+++.+ .+.++||+++++|+||-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgA  161 (412)
T 4hb9_A           83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGA  161 (412)
T ss_dssp             TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred             CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEEC
Confidence                                         112333322 2446788999999986655554 688999999999999999


Q ss_pred             cCCCCC
Q 018652          167 IGAKPT  172 (352)
Q Consensus       167 ~G~~p~  172 (352)
                      -|....
T Consensus       162 DG~~S~  167 (412)
T 4hb9_A          162 DGSNSK  167 (412)
T ss_dssp             CCTTCH
T ss_pred             CCCCcc
Confidence            998753

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.41  E-value=2.2e-06  Score=84.68  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=76.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc-cc-----------------------cc------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~-~~-----------------------~~------------------  109 (352)
                      ..|+|||||..|+++|..+++.|.+|+|+++... +.                       ..                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            4799999999999999999999999999997631 10                       00                  


Q ss_pred             -----------ccC-HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          110 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 -----------~~~-~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                                 ..+ ..+...+.+.+++ .|++++ +..|+.+..+ ++.+..|.+.+|.++.+|.||+|+|..+.
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e-~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVE-NDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEES-SSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEec-CCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence                       001 1345566777777 699995 5789999753 56677888889988999999999998654

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.39  E-value=2.5e-06  Score=83.89  Aligned_cols=100  Identities=17%  Similarity=0.248  Sum_probs=76.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc-cc-----------------------cc-----------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR-----------------  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~-~~-----------------------~~-----------------  109 (352)
                      ...|+|||||..|+++|..+++.|.+|.|+++... +.                       ..                 
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~  106 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLN  106 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEES
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecc
Confidence            45799999999999999999999999999997631 10                       00                 


Q ss_pred             ------------ccC-HHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          110 ------------LFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 ------------~~~-~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                                  ..+ ..+...+.+.+++ .|++++ +..|+++..+ ++.+..|.+.+|+++.+|.||+|+|..++
T Consensus       107 ~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~dG~~i~AdaVVLATG~~s~  181 (637)
T 2zxi_A          107 TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVK-NNQVVGVRTNLGVEYKTKAVVVTTGTFLN  181 (637)
T ss_dssp             TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEES-SSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred             cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEec-CCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence                        000 1345566677777 599995 6789998753 56677888999999999999999998754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.38  E-value=8.1e-07  Score=87.27  Aligned_cols=101  Identities=23%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccc------ccc-----CH--HHHHHHHHHHHhCCcEEEcCCeE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ------RLF-----TP--SLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~------~~~-----~~--~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      ++|+|||||+.|+.+|..|++.  +.+|+++++.+.+.-      ..+     .+  .+........++.|++++++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            5899999999999999999988  789999998875311      000     00  01112233344579999999999


Q ss_pred             EEEEecCCCcEEEEE-cCCCC--EEEcCEEEEccCCCCCch
Q 018652          137 KNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~-~~~g~--~i~~D~vi~a~G~~p~~~  174 (352)
                      ++++.. ...+ .+. +.+|+  ++.+|.+|+|||.+|...
T Consensus        82 ~~id~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  120 (565)
T 3ntd_A           82 VAIDRA-AKLV-TVRRLLDGSEYQESYDTLLLSPGAAPIVP  120 (565)
T ss_dssp             EEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEECC-CCEE-EEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence            999853 3333 333 33454  789999999999987643

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.36  E-value=3.8e-06  Score=78.01  Aligned_cols=53  Identities=17%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      ..+.+.+++.|++++.+++|+++... ++.+..|.+.+| ++.+|.||+|+|...
T Consensus       153 ~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          153 TAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhH
Confidence            44566778889999999999999864 455555777777 799999999999765

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.36  E-value=2.5e-06  Score=81.47  Aligned_cols=100  Identities=20%  Similarity=0.220  Sum_probs=76.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------------c---------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------R---------------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------------~---------------------------  109 (352)
                      .+|+|||||+.|+.+|..|++.|.+|+|+++.+.+..               .                           
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            5799999999999999999999999999997653210               0                           


Q ss_pred             ---------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC---CCC--EEEcCEEEEccCCCCC
Q 018652          110 ---------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 ---------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~  172 (352)
                               .++ ..+.+.+.+.+.+.|++++.+++|+++..+ ++.+..|.+.   +|+  ++.+|.||.|+|....
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence                     000 235566777778899999999999999864 4455445543   675  7999999999998765

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.35  E-value=3.9e-06  Score=81.49  Aligned_cols=100  Identities=16%  Similarity=0.162  Sum_probs=76.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc--------cc-----------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------LQ-----------------------------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~--------~~-----------------------------------  108 (352)
                      .+|+|||||..|+.+|..|++.|.+|+|+++.+..        .+                                   
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            57999999999999999999999999999987310        00                                   


Q ss_pred             ------------------ccc-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE--EEEcCCCC--EEEcCEEEE
Q 018652          109 ------------------RLF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA--AVKLEDGS--TIDADTIVI  165 (352)
Q Consensus       109 ------------------~~~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~--~v~~~~g~--~i~~D~vi~  165 (352)
                                        ..+ ...+...+.+.+++.|++++.+++|+++... ++.+.  .+...+|+  ++.+|.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                              000 1234566777778899999999999999864 45443  34455675  799999999


Q ss_pred             ccCCCCC
Q 018652          166 GIGAKPT  172 (352)
Q Consensus       166 a~G~~p~  172 (352)
                      |+|....
T Consensus       167 AdG~~S~  173 (512)
T 3e1t_A          167 ASGNRTR  173 (512)
T ss_dssp             CCCTTCS
T ss_pred             CCCcchH
Confidence            9998653

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.35  E-value=2.4e-06  Score=78.26  Aligned_cols=96  Identities=18%  Similarity=0.178  Sum_probs=69.3

Q ss_pred             CeEEEECCChHHHHHHHHHHh---CCCcEEEEecCCcccccc----------------------cCH---HH--------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------------------FTP---SL--------  115 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~---~g~~Vtvv~~~~~~~~~~----------------------~~~---~~--------  115 (352)
                      .+|+|||+|..|+.+|..|++   .|.+|+|+++++.+..+.                      .++   ..        
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            369999999999999999999   999999999764221100                      000   11        


Q ss_pred             ------------------------------HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEE
Q 018652          116 ------------------------------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI  165 (352)
Q Consensus       116 ------------------------------~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~  165 (352)
                                                    ...++...++.|++++++++|++|+..+++  ..|.+.+|+.+.+|.||+
T Consensus        82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vV~  159 (342)
T 3qj4_A           82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTGSPEQFDLIVL  159 (342)
T ss_dssp             HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS--EEEEESSSCCEEESEEEE
T ss_pred             hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEE
Confidence                                          112222333348999999999999875443  357888888889999999


Q ss_pred             ccCC
Q 018652          166 GIGA  169 (352)
Q Consensus       166 a~G~  169 (352)
                      |++.
T Consensus       160 A~p~  163 (342)
T 3qj4_A          160 TMPV  163 (342)
T ss_dssp             CSCH
T ss_pred             CCCH
Confidence            9984

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.34  E-value=4.4e-07  Score=86.73  Aligned_cols=100  Identities=21%  Similarity=0.246  Sum_probs=71.6

Q ss_pred             eEEEECCChHHHHHHHHHHhC--CCcEEEEecCCccc----------cccc---CH-HHHHHHHHHHHhCCcEEEcCCeE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL----------QRLF---TP-SLAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~----------~~~~---~~-~~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      +++|||+|+.|+.+|..|++.  |.+|+++++.+.+.          ....   ++ .+...+.+.+++.|++++.++.+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            699999999999999999998  99999999886421          0000   11 11122345677889999999999


Q ss_pred             EEEEecCCCcEEEEEc-CC--CCEEEcCEEEEccCCCCCch
Q 018652          137 KNLEAGSDGRVAAVKL-ED--GSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~-~~--g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ..++..+ ..+ .+.. .+  ++++++|.+|+|+|.+|...
T Consensus        82 ~~i~~~~-~~v-~v~~~~~g~~~~~~~d~lviAtGs~p~~p  120 (452)
T 2cdu_A           82 TNVDPET-KTI-KVKDLITNEEKTEAYDKLIMTTGSKPTVP  120 (452)
T ss_dssp             EEEEGGG-TEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEcCC-CEE-EEEecCCCceEEEECCEEEEccCCCcCCC
Confidence            9997532 222 2322 22  45799999999999988644

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.34  E-value=3.3e-06  Score=79.00  Aligned_cols=56  Identities=18%  Similarity=0.336  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      +...+.+.+++.|++++.+++|+++... ++.+..|.+.+| ++.+|.||+|+|...+
T Consensus       176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~s~  231 (405)
T 2gag_B          176 VAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRG-TIHAGKVALAGAGHSS  231 (405)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTC-CEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCc-eEECCEEEECCchhHH
Confidence            4445667778899999999999999864 455667788887 6999999999998653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.34  E-value=5.6e-06  Score=81.66  Aligned_cols=101  Identities=20%  Similarity=0.282  Sum_probs=79.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhC------CCcEEEEecCCccccc------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHLLQR------------------------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtvv~~~~~~~~~------------------------------------  109 (352)
                      .+|+|||||+.|+.+|..|++.      |.+|+|+++.+.+-..                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999998      9999999976432100                                    


Q ss_pred             --------cc---C--------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC------CC---
Q 018652          110 --------LF---T--------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------DG---  155 (352)
Q Consensus       110 --------~~---~--------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~------~g---  155 (352)
                              .+   +              ..+.+.+.+.+++.|+++++++.++++..++++.+..|.+.      +|   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                    00   0              13456677778888999999999999987655666667765      33   


Q ss_pred             ------CEEEcCEEEEccCCCCC
Q 018652          156 ------STIDADTIVIGIGAKPT  172 (352)
Q Consensus       156 ------~~i~~D~vi~a~G~~p~  172 (352)
                            .++.+|.||.|.|....
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTCH
T ss_pred             cccCCceEEECCEEEEeeCCCch
Confidence                  67999999999999875

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.32  E-value=3.5e-06  Score=83.12  Aligned_cols=101  Identities=15%  Similarity=0.199  Sum_probs=78.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-----------------------------c------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------------------Q------------  108 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-----------------------------~------------  108 (352)
                      ...+|+|||||..|+-+|..|++.|.+|+|+++.+..-                             .            
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  101 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQD  101 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCC
Confidence            35789999999999999999999999999999762100                             0            


Q ss_pred             ---------------------ccc-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CC--CEEEcCEE
Q 018652          109 ---------------------RLF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDADTI  163 (352)
Q Consensus       109 ---------------------~~~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g--~~i~~D~v  163 (352)
                                           ..+ ...+...+.+.+++.|++++.+++|+++... ++....|.+. +|  +++.+|.|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlV  180 (591)
T 3i3l_A          102 QAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFV  180 (591)
T ss_dssp             CCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEE
T ss_pred             CccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEE
Confidence                                 001 1245566777888899999999999999854 3444567766 66  57999999


Q ss_pred             EEccCCCC
Q 018652          164 VIGIGAKP  171 (352)
Q Consensus       164 i~a~G~~p  171 (352)
                      |.|+|...
T Consensus       181 V~AdG~~S  188 (591)
T 3i3l_A          181 IDAGGSGG  188 (591)
T ss_dssp             EECCGGGC
T ss_pred             EECCCCcc
Confidence            99999865

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.32  E-value=1.3e-06  Score=83.33  Aligned_cols=101  Identities=19%  Similarity=0.222  Sum_probs=72.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccc----------ccc-C-HHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ----------RLF-T-PSLAQRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~----------~~~-~-~~~~~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      ++++|||+|+.|+.+|..|++.  |.+|+++++++.+..          ... + .++.....+.+++.||+++.++.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            3699999999999999999997  899999998764310          000 1 1112223466778899999999999


Q ss_pred             EEEecCCCcEEEEEc-CCCC--EEEcCEEEEccCCCCCch
Q 018652          138 NLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~  174 (352)
                      .++.. +..+ .+.. .+|+  ++.+|.+|+|+|.+|...
T Consensus        81 ~i~~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  118 (447)
T 1nhp_A           81 AIQPK-EHQV-TVKDLVSGEERVENYDKLIISPGAVPFEL  118 (447)
T ss_dssp             EEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEeCC-CCEE-EEEecCCCceEEEeCCEEEEcCCCCcCCC
Confidence            99743 2222 3332 3465  489999999999988644

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.30  E-value=5.8e-07  Score=85.97  Aligned_cols=90  Identities=14%  Similarity=0.197  Sum_probs=69.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc-------ccc-ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------LQR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-------~~~-~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+       ++. .++.++.....+.+++.||++++++.+.    
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~----  196 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG----  196 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence            3578999999999999999999999999999988654       121 1355677777888999999999998652    


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                       .     .+.++++ .+.+|.||+|+|..
T Consensus       197 -~-----~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          197 -R-----DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             -T-----TBCHHHH-HSSCSEEEECCCCC
T ss_pred             -c-----EEEhhHh-HhhCCEEEEecCCC
Confidence             0     1223332 25799999999986

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.30  E-value=5.1e-06  Score=81.97  Aligned_cols=101  Identities=18%  Similarity=0.310  Sum_probs=76.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc-cc-----------------------cc----------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LL-----------------------QR----------------  109 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~-~~-----------------------~~----------------  109 (352)
                      ....|+|||||..|+++|..|++.|.+|+++++... +.                       ..                
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l   99 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML   99 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence            446899999999999999999999999999997631 10                       00                


Q ss_pred             -------------ccC-HHHHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          110 -------------LFT-PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 -------------~~~-~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                                   ..+ ..+...+.+.+++. |++++. ..++.+..+ ++.+..|.+.+|+++.+|.||+|+|..++
T Consensus       100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d-~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSAN-SGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEE-TTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEec-CCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                         001 13455666777774 999965 478888643 45666688889999999999999998754

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.29  E-value=5.4e-06  Score=81.59  Aligned_cols=102  Identities=20%  Similarity=0.225  Sum_probs=76.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------------  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----------------------------------------  109 (352)
                      ..+|+|||+|..|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            458999999999999999999999999999976432100                                         


Q ss_pred             --------------------------------------c--------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecC
Q 018652          110 --------------------------------------L--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  143 (352)
Q Consensus       110 --------------------------------------~--------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~  143 (352)
                                                            .        .+..+...+.+.+++.||++++++.++++..++
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~  285 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA  285 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence                                                  0        012344566677788999999999999997543


Q ss_pred             CCcEEEEEcC--CCC--EEEcCEEEEccCCCCC
Q 018652          144 DGRVAAVKLE--DGS--TIDADTIVIGIGAKPT  172 (352)
Q Consensus       144 ~~~~~~v~~~--~g~--~i~~D~vi~a~G~~p~  172 (352)
                      ++++..|...  +|+  ++.+|.||+|+|..++
T Consensus       286 ~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          286 SGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             -CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             CCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            2666666654  664  6899999999997653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.29  E-value=3.4e-06  Score=79.24  Aligned_cols=100  Identities=19%  Similarity=0.288  Sum_probs=74.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-----------------------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------------------  108 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-----------------------------------------  108 (352)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+++.+.+..                                         
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            456899999999999999999999999999998743210                                         


Q ss_pred             -cc---c-----------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652          109 -RL---F-----------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  167 (352)
Q Consensus       109 -~~---~-----------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  167 (352)
                       ..   +                 ...+.+.+.+.+.+  ++++++++|++++..++ . ..+++.+|+++.+|+||.|.
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~-~-v~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDAD-G-VTVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETT-E-EEEEETTSCEEEESEEEECC
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCC-c-EEEEEcCCCEEeeCEEEECC
Confidence             00   0                 01233444444444  78999999999986533 3 36788999999999999999


Q ss_pred             CCCCCc
Q 018652          168 GAKPTV  173 (352)
Q Consensus       168 G~~p~~  173 (352)
                      |.....
T Consensus       178 G~~S~v  183 (407)
T 3rp8_A          178 GSHSAL  183 (407)
T ss_dssp             CTTCSS
T ss_pred             CcChHH
Confidence            987654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.29  E-value=1.2e-06  Score=83.26  Aligned_cols=101  Identities=17%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCC--CcEEEEecCCccc-ccc-cC---------HH--HHHHHHHHHHhCCcEEEcCCeEE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL-QRL-FT---------PS--LAQRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~-~~~-~~---------~~--~~~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      ||+|||+|+.|+.+|..|+++|  .+|+++++++.+. .+. ++         ..  +....++.+++.+|+++.+++++
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            6999999999999999999987  5699999876431 110 00         00  00112345677899999999999


Q ss_pred             EEEecCCCcEEEEEcCC--CCEEEcCEEEEccCCCCCch
Q 018652          138 NLEAGSDGRVAAVKLED--GSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~~~--g~~i~~D~vi~a~G~~p~~~  174 (352)
                      .++.. ...+.......  +.++.+|.+|+|||.+|+..
T Consensus        82 ~id~~-~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p  119 (437)
T 4eqs_A           82 AINDE-RQTVSVLNRKTNEQFEESYDKLILSPGASANSL  119 (437)
T ss_dssp             EEETT-TTEEEEEETTTTEEEEEECSEEEECCCEEECCC
T ss_pred             EEEcc-CcEEEEEeccCCceEEEEcCEEEECCCCccccc
Confidence            99753 22222222222  34689999999999998743

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.28  E-value=8.4e-07  Score=85.93  Aligned_cols=101  Identities=17%  Similarity=0.317  Sum_probs=68.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc---------ccCH-HHHHHHHHHH--HhCCcEEEcCCeEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------LFTP-SLAQRYEQLY--QQNGVKFVKGASIKN  138 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~---------~~~~-~~~~~l~~~l--~~~gV~~~~~~~v~~  138 (352)
                      .++|||||||+.|+.+|..|++.+.+||||++++...-.         .+++ .+...+.+.+  ++.+++++.+ ++++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~  120 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATS  120 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEE
Confidence            458999999999999999999999999999998753211         0111 1111123332  3457888865 6888


Q ss_pred             EEecCCCcEEEEE------------------cCCCCEEEcCEEEEccCCCCCch
Q 018652          139 LEAGSDGRVAAVK------------------LEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       139 i~~~~~~~~~~v~------------------~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      |+... ..+ .+.                  ..++.+++||.+|+|+|.+|+..
T Consensus       121 ID~~~-k~V-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          121 INPDR-NTV-TIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EEGGG-TEE-EEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             EEhhh-CEE-EEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            87542 222 221                  24466899999999999998753

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.28  E-value=5e-06  Score=76.85  Aligned_cols=54  Identities=17%  Similarity=0.320  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      +...+.+.+++.|++++.+++|+++...+++  ..+.+.+|+ +.+|.||+|+|...
T Consensus       151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~v~~~~g~-~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG--VTIETADGE-YQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSCE-EEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE--EEEEECCCe-EEcCEEEEcCCccH
Confidence            3445566677889999999999999865433  356777774 99999999999754

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.27  E-value=8e-06  Score=82.03  Aligned_cols=53  Identities=13%  Similarity=0.191  Sum_probs=42.6

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      ..+.+.+++.|++++++++|+++...+ +. ..|.+.+|.++.+|.||+|+|...
T Consensus       421 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~-v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          421 RNVLELAQQQGLQIYYQYQLQNFSRKD-DC-WLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEEET-TE-EEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHhCCCEEEeCCeeeEEEEeC-Ce-EEEEECCCCEEECCEEEECCCcch
Confidence            345556678899999999999998653 33 377888888899999999999864

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.26  E-value=2.8e-06  Score=79.60  Aligned_cols=101  Identities=18%  Similarity=0.306  Sum_probs=71.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc------cCH-HH---------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTP-SL---------------------------  115 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~------~~~-~~---------------------------  115 (352)
                      ...+|+|||||+.|+.+|..|++.|.+|+|+++.+.+..+.      +.+ ..                           
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~  104 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE  104 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence            35689999999999999999999999999999875432110      000 00                           


Q ss_pred             ----------------------HHHHHHHHHhC--CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          116 ----------------------AQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       116 ----------------------~~~l~~~l~~~--gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                                            ...+.+.|.+.  +++++++++|++++.+++ .+ .+++.+|+++.+|.||.|.|...
T Consensus       105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKK-KW-TLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSS-SE-EEEETTSCCEEESEEEECSCTTC
T ss_pred             CCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCC-EE-EEEECCCcEEecCEEEECCCcch
Confidence                                  01122222221  357888999999986543 33 57888998899999999999876


Q ss_pred             C
Q 018652          172 T  172 (352)
Q Consensus       172 ~  172 (352)
                      .
T Consensus       183 ~  183 (398)
T 2xdo_A          183 K  183 (398)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.26  E-value=3.5e-06  Score=82.81  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=75.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc-------------------------------------cccc----
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------------------------------LQRL----  110 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-------------------------------------~~~~----  110 (352)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+++.+.+                                     +...    
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            47999999999999999999999999999975321                                     0000    


Q ss_pred             ---------------c-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc--CCC-CEEEcCEEEEccCCCC
Q 018652          111 ---------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDG-STIDADTIVIGIGAKP  171 (352)
Q Consensus       111 ---------------~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~--~~g-~~i~~D~vi~a~G~~p  171 (352)
                                     + ...+...+.+.+++.|++++.+++|++++.++++.  .+++  .+| +++.+|+||.|.|...
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeE--EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence                           0 12345667777778899999999999998654443  3444  778 6899999999999876

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.26  E-value=4.2e-06  Score=81.64  Aligned_cols=100  Identities=16%  Similarity=0.178  Sum_probs=75.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------  107 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------------------------------------------  107 (352)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.+.                                            
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            579999999999999999999999999999864210                                            


Q ss_pred             -------c--------------c-------cc-CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCc--EEEEEcCCC-
Q 018652          108 -------Q--------------R-------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR--VAAVKLEDG-  155 (352)
Q Consensus       108 -------~--------------~-------~~-~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~--~~~v~~~~g-  155 (352)
                             .              .       .+ ...+...+.+.+++.|+++++++++++++.++++.  ...+.+.++ 
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~  165 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD  165 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence                   0              0       00 12345667777888899999999999998654411  234555555 


Q ss_pred             --CEEEcCEEEEccCCCC
Q 018652          156 --STIDADTIVIGIGAKP  171 (352)
Q Consensus       156 --~~i~~D~vi~a~G~~p  171 (352)
                        .++.+|+||.|.|...
T Consensus       166 ~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          166 GEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             EEEEEEEEEEEECCCTTC
T ss_pred             CeEEEEeCEEEECCCCcc
Confidence              6799999999999865

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.25  E-value=2.3e-06  Score=82.10  Aligned_cols=98  Identities=23%  Similarity=0.299  Sum_probs=71.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc------------------------------cC-HH------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------FT-PS------  114 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~------------------------------~~-~~------  114 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..+                              ++ +.      
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD   84 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence            479999999999999999999999999999665431100                              00 00      


Q ss_pred             ----HH--HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCE--EEcCEEEEccCCCCCch
Q 018652          115 ----LA--QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVS  174 (352)
Q Consensus       115 ----~~--~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~--i~~D~vi~a~G~~p~~~  174 (352)
                          +.  ..+...+++.|++++.+ .+..++.    ....|.+.+|++  +.+|.+|+|+|.+|...
T Consensus        85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~----~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKDP----THVIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEET----TEEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             hheeccccchHHHHHHhCCCEEEEe-EEEEecC----CeEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence                01  33445556789999987 5666652    234677788888  99999999999988643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.25  E-value=2.6e-06  Score=81.96  Aligned_cols=101  Identities=16%  Similarity=0.264  Sum_probs=71.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCccc-ccc-c----------CHHHHHHHHHHH-HhCCcEEEcCCeE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL-QRL-F----------TPSLAQRYEQLY-QQNGVKFVKGASI  136 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~-~~~-~----------~~~~~~~l~~~l-~~~gV~~~~~~~v  136 (352)
                      .+++|||+|+.|+.+|..|++.  |.+|+++++.+.+. ... +          ...+.....+.+ ++.|++++.++.+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            5899999999999999999986  89999999876431 000 0          011111223445 4459999999999


Q ss_pred             EEEEecCCCcEEEEEc-CCCC--EEEcCEEEEccCCCCCch
Q 018652          137 KNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~~~  174 (352)
                      ..++.. +..+ .+.. .+|+  ++.+|.+|+|+|.+|...
T Consensus       117 ~~i~~~-~~~v-~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (480)
T 3cgb_A          117 TKVDTE-KKIV-YAEHTKTKDVFEFSYDRLLIATGVRPVMP  155 (480)
T ss_dssp             EEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEECC-CCEE-EEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence            999753 2322 3433 4576  799999999999988643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.21  E-value=1.1e-06  Score=84.99  Aligned_cols=99  Identities=23%  Similarity=0.387  Sum_probs=70.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCccc-cc-----cc--CH--HHHHH--------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL-QR-----LF--TP--SLAQR--------------------  118 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~-~~-----~~--~~--~~~~~--------------------  118 (352)
                      ..+++|||+|+.|+.+|..|++.  +.+|+|+++.+.+. .+     .+  ..  .....                    
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   90 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHh
Confidence            45799999999999999999876  88999999876431 00     00  00  00000                    


Q ss_pred             HH--HH---HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          119 YE--QL---YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       119 l~--~~---l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      +.  +.   +.+.||+++.++.+.+++...  +  .|.+.+|+++.+|.+|+|||.+|..
T Consensus        91 ~~~~~~l~~~~~~gv~~~~g~~v~~id~~~--~--~V~~~~g~~i~yd~lviATGs~p~~  146 (493)
T 1m6i_A           91 YVSAQDLPHIENGGVAVLTGKKVVQLDVRD--N--MVKLNDGSQITYEKCLIATGGTPRS  146 (493)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGG--T--EEEETTSCEEEEEEEEECCCEEECC
T ss_pred             hcchhhhhhhhcCCeEEEcCCEEEEEECCC--C--EEEECCCCEEECCEEEECCCCCCCC
Confidence            00  00   124689999999999998542  2  5778899999999999999998864

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.21  E-value=1.4e-05  Score=80.35  Aligned_cols=53  Identities=15%  Similarity=0.199  Sum_probs=41.3

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCCCC
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKP  171 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p  171 (352)
                      ..+.+.+++.|++++++++|+++...+++  ..|.+.+|+ ++.+|.||+|+|...
T Consensus       416 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~--v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          416 HALMMLAQQNGMTCHYQHELQRLKRIDSQ--WQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEECSSS--EEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHhCCCEEEeCCeEeEEEEeCCe--EEEEeCCCcEEEECCEEEECCCcch
Confidence            33445566789999999999999865443  367888887 899999999999864

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.21  E-value=7.9e-06  Score=75.94  Aligned_cols=62  Identities=16%  Similarity=0.440  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  180 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g  180 (352)
                      +...+.+.+++.|++++.+++|++++..+++  ..+.+.+| ++.+|.||+|+|...+ .++..++
T Consensus       152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~a~~vV~A~G~~~~-~l~~~~g  213 (389)
T 2gf3_A          152 CIRAYRELAEARGAKVLTHTRVEDFDISPDS--VKIETANG-SYTADKLIVSMGAWNS-KLLSKLN  213 (389)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSSC--EEEEETTE-EEEEEEEEECCGGGHH-HHGGGGT
T ss_pred             HHHHHHHHHHHCCCEEEcCcEEEEEEecCCe--EEEEeCCC-EEEeCEEEEecCccHH-HHhhhhc
Confidence            3455666778889999999999999865443  34666666 6999999999998653 3444443

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.20  E-value=6.3e-06  Score=80.22  Aligned_cols=97  Identities=15%  Similarity=0.241  Sum_probs=69.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc---------------------------------cccc-----C
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------------------QRLF-----T  112 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~---------------------------------~~~~-----~  112 (352)
                      ..+++|||||+.|+.+|..|++.|.+|+++++++.+.                                 +...     .
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  122 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGI  122 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhhH
Confidence            3579999999999999999999999999999886321                                 1100     1


Q ss_pred             HHHHHHH----H---HHH-----HhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          113 PSLAQRY----E---QLY-----QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       113 ~~~~~~l----~---~~l-----~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ..+...+    .   +.+     ++.|++++++..+..++.   .   .+.+. ++.+.+|.+|+|+|.+|...
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~---~---~v~~~-g~~~~~d~lViATGs~p~~p  189 (523)
T 1mo9_A          123 KEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN---H---TVEAA-GKVFKAKNLILAVGAGPGTL  189 (523)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET---T---EEEET-TEEEEBSCEEECCCEECCCC
T ss_pred             HHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC---C---EEEEC-CEEEEeCEEEECCCCCCCCC
Confidence            1122222    2   455     778999996667777763   1   34444 67899999999999988744

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.20  E-value=4.1e-06  Score=80.29  Aligned_cols=98  Identities=26%  Similarity=0.321  Sum_probs=69.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------ccC-H
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFT-P  113 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-------------------------------------~~~-~  113 (352)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+-..                                     .++ +
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDSA   82 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            47999999999999999999999999999988543100                                     000 0


Q ss_pred             H-----------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCch
Q 018652          114 S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       114 ~-----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  174 (352)
                      .           +...+.+.+++.||+++.++.+ .++.   . ...+.+.+|  +++.+|.+|+|||.+|...
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~~---~-~~~v~~~~G~~~~~~~d~lviAtG~~p~~p  151 (468)
T 2qae_A           83 KMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FETA---H-SIRVNGLDGKQEMLETKKTIIATGSEPTEL  151 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EEET---T-EEEEEETTSCEEEEEEEEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EeeC---C-EEEEEecCCceEEEEcCEEEECCCCCcCCC
Confidence            0           1112345667789999988743 3431   2 235666777  6799999999999988643

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.20  E-value=2.1e-05  Score=76.72  Aligned_cols=55  Identities=16%  Similarity=0.284  Sum_probs=44.8

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ..+.+.+++.|++++.+ +|+++...+++.+..|.+.+|+++.+|.||.|+|....
T Consensus       169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            44556667789999999 89999875566666788889988999999999998765

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.20  E-value=7.2e-06  Score=78.56  Aligned_cols=99  Identities=24%  Similarity=0.318  Sum_probs=68.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc--------------------------ccccc--c-------C-HH
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--------------------------LLQRL--F-------T-PS  114 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~--------------------------~~~~~--~-------~-~~  114 (352)
                      ..+++|||+|+.|+.+|..|++.|.+|++++++..                          ..+..  +       + +.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSK   83 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHHH
Confidence            46899999999999999999999999999998730                          00100  0       0 11


Q ss_pred             HH-------HH-----HHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCch
Q 018652          115 LA-------QR-----YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       115 ~~-------~~-----l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  174 (352)
                      +.       +.     ..+.+++. ||+++.+. +..++.   . ...+.+.+|  +++++|.+|+|||.+|..+
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~~~---~-~~~v~~~~g~~~~~~~d~lviAtGs~p~~p  153 (467)
T 1zk7_A           84 LLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFKDD---Q-SLTVRLNEGGERVVMFDRCLVATGASPAVP  153 (467)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEEET---T-EEEEEETTSSEEEEECSEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEccC---C-EEEEEeCCCceEEEEeCEEEEeCCCCCCCC
Confidence            11       11     12445566 99998874 555542   2 235667778  6799999999999987644

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.20  E-value=4.8e-06  Score=79.83  Aligned_cols=99  Identities=25%  Similarity=0.343  Sum_probs=70.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc------------------------------------cCH-
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------FTP-  113 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~------------------------------------~~~-  113 (352)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+-...                                    .+. 
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA   85 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence            4679999999999999999999999999999885331000                                    000 


Q ss_pred             H-----------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCch
Q 018652          114 S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       114 ~-----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  174 (352)
                      .           +...+.+.+++.||+++.++.+. ++.   . ...+.+.+|  +++.+|.+|+|+|.+|...
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~---~-~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p  154 (470)
T 1dxl_A           86 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VSP---S-EISVDTIEGENTVVKGKHIIIATGSDVKSL  154 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EET---T-EEEECCSSSCCEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecC---C-EEEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence            0           11223456677899999988553 431   2 235566677  6799999999999988643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.18  E-value=9.4e-06  Score=75.27  Aligned_cols=98  Identities=21%  Similarity=0.315  Sum_probs=72.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------------------------------c-----------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------------R-----------  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------------------------------~-----------  109 (352)
                      .|+|||||+.|+-+|..|++.|.+|+|+++.+.+-.                                +           
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            599999999999999999999999999997532100                                0           


Q ss_pred             ------------ccC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-CCC--CEEEcCEEEEccCCCC
Q 018652          110 ------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDG--STIDADTIVIGIGAKP  171 (352)
Q Consensus       110 ------------~~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-~~g--~~i~~D~vi~a~G~~p  171 (352)
                                  .++ ..+...+.+...+.|++++.++.++.+... ++.+..+.. .++  .++.+|+||.|.|...
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeecccccceEEEEeEEEeCCcccc
Confidence                        001 234456667778889999999999998754 444444433 233  3689999999999765

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.18  E-value=9.9e-07  Score=80.47  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHH--hCCCcEEEEecCCcc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAV--GWKLDTTIIFPENHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~--~~g~~Vtvv~~~~~~  106 (352)
                      ....|+|||+|+.|+.+|.+|+  +.|.+|+|+++.+.+
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            3467999999999999999996  469999999987543

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.17  E-value=3.8e-06  Score=78.42  Aligned_cols=99  Identities=16%  Similarity=0.284  Sum_probs=70.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcc------cccccC-----HHHHH-HHHHHHHhCCcEEEcCCeE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL------LQRLFT-----PSLAQ-RYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~------~~~~~~-----~~~~~-~l~~~l~~~gV~~~~~~~v  136 (352)
                      ..+++|||+|+.|+.+|..|++.|  .+|+++++++..      +...+.     ..+.. .+.+.+++.|++++.++.+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   83 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV   83 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence            467999999999999999999998  568999876421      111111     11111 2345567889999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          137 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                      ..++... .   .+.+.+ .++.+|.+|+|+|.+|...
T Consensus        84 ~~i~~~~-~---~v~~~~-~~~~~d~lviAtG~~p~~p  116 (384)
T 2v3a_A           84 TGIDPGH-Q---RIWIGE-EEVRYRDLVLAWGAEPIRV  116 (384)
T ss_dssp             CEEEGGG-T---EEEETT-EEEECSEEEECCCEEECCC
T ss_pred             EEEECCC-C---EEEECC-cEEECCEEEEeCCCCcCCC
Confidence            9987532 2   345554 4799999999999988643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.16  E-value=6.7e-06  Score=78.78  Aligned_cols=95  Identities=23%  Similarity=0.430  Sum_probs=67.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------ccC---
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFT---  112 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----------------------------------~~~---  112 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|++++++. +...                                   .++   
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   82 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPR   82 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence            3579999999999999999999999999999873 2000                                   000   


Q ss_pred             ---------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          113 ---------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       113 ---------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                               ..+...+.+.+++.||+++.+. +..++.   .   .|.+ +|+++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~---~---~v~~-~g~~~~~d~lviAtGs~p~~p  145 (463)
T 2r9z_A           83 LVAGRDRYIGAINSFWDGYVERLGITRVDGH-ARFVDA---H---TIEV-EGQRLSADHIVIATGGRPIVP  145 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEET---T---EEEE-TTEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEeE-EEEccC---C---EEEE-CCEEEEcCEEEECCCCCCCCC
Confidence                     0111223445678899999885 444542   2   3444 677899999999999988643

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.16  E-value=1.7e-05  Score=75.06  Aligned_cols=56  Identities=25%  Similarity=0.287  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhCCcEEEcCC---eEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGA---SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~---~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      +...+.+.+++.|+++++++   +|+++... ++.+..|.+.+|+++.+|.||+|+|.-.
T Consensus       163 ~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          163 ALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            34455666778899999999   99999864 5566668999998899999999999754

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.16  E-value=1.6e-05  Score=72.16  Aligned_cols=164  Identities=20%  Similarity=0.185  Sum_probs=99.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccccc-------------------------------------cC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL-------------------------------------FT  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~~-------------------------------------~~  112 (352)
                      .+|+|||+|+.|+.+|..|++.  |.+|+++++.+.+....                                     ..
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~  145 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA  145 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence            4899999999999999999998  99999999864331000                                     11


Q ss_pred             HHHHHHHHHHHHhC-CcEEEcCCeEEEEEecC--C-C--cEEEEEcC--------------CCCEEEc------------
Q 018652          113 PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGS--D-G--RVAAVKLE--------------DGSTIDA------------  160 (352)
Q Consensus       113 ~~~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~--~-~--~~~~v~~~--------------~g~~i~~------------  160 (352)
                      ..+...+.+.+.+. |++++.++.+.++..++  + +  ++..|...              ++.++.+            
T Consensus       146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~  225 (326)
T 2gjc_A          146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS  225 (326)
T ss_dssp             HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred             HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence            23345566666664 99999999999997543  2 4  66666542              3357999            


Q ss_pred             ---CEEEEccCCCCCc-hhhhh----cCCccc-CC--c--------EEeCCCCC-CCCCCEEEecccccc--CCccCCcc
Q 018652          161 ---DTIVIGIGAKPTV-SPFER----VGLNSS-VG--G--------IQVDGQFR-TRMPGIFAIGDVAAF--PLKMYDRT  218 (352)
Q Consensus       161 ---D~vi~a~G~~p~~-~~~~~----~gl~~~-~g--~--------i~vd~~~~-t~~~~Iya~GD~a~~--~~~~~~~~  218 (352)
                         +.||.|+|..... .++..    .+.... .|  .        ..|+..-. +-+|++|++|-.+..  ..+..|..
T Consensus       226 ~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~~  305 (326)
T 2gjc_A          226 QKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPT  305 (326)
T ss_dssp             TTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCCBCCSC
T ss_pred             ccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCCCCChh
Confidence               9999999987543 23221    111100 00  0        11111111 157999999988742  12222221


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 018652          219 ARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       219 ~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                           +..-...|+.+|+.|+.
T Consensus       306 -----fg~m~~sg~~~a~~~~~  322 (326)
T 2gjc_A          306 -----FGAMALSGVHAAEQILK  322 (326)
T ss_dssp             -----CHHHHHHHHHHHHHHHH
T ss_pred             -----hhhhhhhhHHHHHHHHH
Confidence                 11234567778777763

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.16  E-value=8.9e-06  Score=75.26  Aligned_cols=52  Identities=17%  Similarity=0.139  Sum_probs=41.4

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      ..+.+.+++.|++++.+++|+++...++ . ..|++.+| ++.+|.||+|+|...
T Consensus       158 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~-~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          158 QGYLRGIRRNQGQVLCNHEALEIRRVDG-A-WEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHTTCEEESSCCCCEEEEETT-E-EEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEEEeCC-e-EEEEeCCC-EEEcCEEEECCChhH
Confidence            3455667788999999999999986533 3 46788777 799999999999754

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.16  E-value=7.5e-06  Score=78.85  Aligned_cols=94  Identities=22%  Similarity=0.278  Sum_probs=69.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------cc----
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LF----  111 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----------------------------------~~----  111 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.. +-..                                   .+    
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~  104 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR-IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEK  104 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC-CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHH
Confidence            3589999999999999999999999999999842 1100                                   00    


Q ss_pred             --------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-CCCEEEcCEEEEccCCCCC
Q 018652          112 --------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       112 --------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~p~  172 (352)
                              -..+...+...+++.+++++.+ .+..++..      .+.+. +++.+.+|.+|+|+|.+|.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~~------~v~v~~~~~~~~~d~lviAtG~~p~  167 (484)
T 3o0h_A          105 LVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVDEH------TLELSVTGERISAEKILIATGAKIV  167 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEETT------EEEETTTCCEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCC------EEEEecCCeEEEeCEEEEccCCCcc
Confidence                    0122344556678889999987 45555421      45555 7788999999999999876

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.16  E-value=7.8e-06  Score=78.05  Aligned_cols=97  Identities=25%  Similarity=0.252  Sum_probs=69.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------ccCH---
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFTP---  113 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----------------------------------~~~~---  113 (352)
                      .+++|||+|+.|+.+|..|++.|.+|+++++. .+...                                   ..+.   
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKV   82 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHHH
Confidence            46999999999999999999999999999986 22100                                   0000   


Q ss_pred             ---------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEEcCEEEEccCCCCCch
Q 018652          114 ---------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       114 ---------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~~  174 (352)
                               .+...+.+.+++.||+++.++.+. ++   .+. ..+.+.+| +++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-id---~~~-v~V~~~~G~~~i~~d~lViATGs~p~~~  148 (455)
T 1ebd_A           83 QEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF-VD---ANT-VRVVNGDSAQTYTFKNAIIATGSRPIEL  148 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE-EE---TTE-EEEEETTEEEEEECSEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-cc---CCe-EEEEeCCCcEEEEeCEEEEecCCCCCCC
Confidence                     012234566778899999887543 43   222 35666777 6799999999999988644

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.15  E-value=5.8e-06  Score=79.47  Aligned_cols=96  Identities=27%  Similarity=0.401  Sum_probs=68.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-------------------------------------ccC-H
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFT-P  113 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-------------------------------------~~~-~  113 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++++.+-..                                     .++ +
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~   85 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVA   85 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCHH
Confidence            57999999999999999999999999999985432100                                     000 0


Q ss_pred             H-----------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CE------EEcCEEEEccCCCCC
Q 018652          114 S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--ST------IDADTIVIGIGAKPT  172 (352)
Q Consensus       114 ~-----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~------i~~D~vi~a~G~~p~  172 (352)
                      .           +...+.+.+++.||+++.++.+..     +.....|.+.+|  ++      +.+|.+|+|+|.+|.
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~-----~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~  158 (478)
T 1v59_A           86 NFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE-----DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT  158 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES-----SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc-----cCCeEEEEecCCCcccccccceEEeCEEEECcCCCCC
Confidence            0           111244567788999998875431     222345667777  56      999999999999884

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.15  E-value=6.9e-06  Score=78.84  Aligned_cols=98  Identities=27%  Similarity=0.301  Sum_probs=69.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-------------------------------------cC-H
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FT-P  113 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-------------------------------------~~-~  113 (352)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+-..+                                     .+ +
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   86 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNLD   86 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCHH
Confidence            479999999999999999999999999999886331000                                     00 0


Q ss_pred             H-----------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-C-CEEEcCEEEEccCCCCCch
Q 018652          114 S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-G-STIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       114 ~-----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-g-~~i~~D~vi~a~G~~p~~~  174 (352)
                      .           +...+.+.+++.||+++.++. ..++   .+ ...|.+.+ + +++.+|.+|+|+|.+|...
T Consensus        87 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~-~~~~---~~-~~~v~~~~gg~~~~~~d~lViAtGs~p~~p  155 (474)
T 1zmd_A           87 KMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYG-KITG---KN-QVTATKADGGTQVIDTKNILIATGSEVTPF  155 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE-EEEE---TT-EEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEec---CC-EEEEEecCCCcEEEEeCEEEECCCCCCCCC
Confidence            0           111235667788999998864 3343   12 23566666 4 5799999999999988643

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.15  E-value=1.1e-05  Score=76.86  Aligned_cols=94  Identities=26%  Similarity=0.451  Sum_probs=67.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc---------------------------c---------cC---
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------------L---------FT---  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~---------------------------~---------~~---  112 (352)
                      .+++|||||+.|+.+|..|++.|.+|++++++. +...                           .         ++   
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (450)
T 1ges_A            5 YDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWET   83 (450)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            579999999999999999999999999999873 2100                           0         00   


Q ss_pred             ---------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          113 ---------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       113 ---------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                               ..+...+...+++.||+++.+.. ..++.   .   .+.+ +|+++.+|.+|+|||.+|..+
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~i~~---~---~v~~-~g~~~~~d~lviAtGs~p~~p  146 (450)
T 1ges_A           84 LIASRTAYIDRIHTSYENVLGKNNVDVIKGFA-RFVDA---K---TLEV-NGETITADHILIATGGRPSHP  146 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC-EEEET---T---EEEE-TTEEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEecC---C---EEEE-CCEEEEeCEEEECCCCCCCCC
Confidence                     01112233456778999998863 44542   2   3444 677899999999999988654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.15  E-value=5.6e-06  Score=79.06  Aligned_cols=96  Identities=24%  Similarity=0.346  Sum_probs=67.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------ccCH-H---
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LFTP-S---  114 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----------------------------------~~~~-~---  114 (352)
                      +++|||+|+.|+.+|..|++.|.+|+++++++.+-..                                  ..+. .   
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   82 (455)
T 2yqu_A            3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPALMA   82 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHHHH
T ss_pred             CEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHHHH
Confidence            6999999999999999999999999999988533100                                  0010 1   


Q ss_pred             --------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          115 --------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       115 --------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                              +...+.+.+++.||+++.++.+ .++   . ....+.+ +|+++.+|.+|+|+|.+|...
T Consensus        83 ~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~---~-~~~~v~~-~g~~~~~d~lviAtG~~p~~~  144 (455)
T 2yqu_A           83 HKDKVVQANTQGVEFLFKKNGIARHQGTAR-FLS---E-RKVLVEE-TGEELEARYILIATGSAPLIP  144 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEEEESCEE-ESS---S-SEEEETT-TCCEEEEEEEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Eec---C-CeEEEee-CCEEEEecEEEECCCCCCCCC
Confidence                    1112345667789999988743 222   2 2224444 678899999999999988643

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.15  E-value=2.7e-06  Score=82.21  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=70.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-------c--c---CHHHHHHHHHHHHhCCcEEEcCCeEEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------L--F---TPSLAQRYEQLYQQNGVKFVKGASIKNL  139 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-------~--~---~~~~~~~l~~~l~~~gV~~~~~~~v~~i  139 (352)
                      .+|+|||+|+.|+.+|..|++. .+|+|+++++.+-..       .  +   ..++...+.+.+ +.+++++.++.+.++
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV  186 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence            4799999999999999999999 999999987654110       0  1   112223333333 569999999999888


Q ss_pred             EecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCch
Q 018652          140 EAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       140 ~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~  174 (352)
                      .... .........+++  ++.+|.+|+|+|..|...
T Consensus       187 ~~~~-~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          187 FDKG-EYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             EECS-SSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             EcCC-cEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence            7543 222222224454  689999999999987643

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.13  E-value=2.4e-05  Score=75.90  Aligned_cols=58  Identities=17%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-C--EEEcC-EEEEccCCCC
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-S--TIDAD-TIVIGIGAKP  171 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~--~i~~D-~vi~a~G~~p  171 (352)
                      .+...+.+.+++.|+++++++.++++..++++++..|...++ +  ++.+| .||+|+|.-.
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            455666777788999999999999998765677777766443 2  58996 9999999654

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.12  E-value=1.8e-05  Score=76.48  Aligned_cols=101  Identities=19%  Similarity=0.257  Sum_probs=77.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------c------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R------------------  109 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------~------------------  109 (352)
                      ...+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..                      .                  
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            456899999999999999999999999999997632100                      0                  


Q ss_pred             ------cc-------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC---EEEcCEEEEccCCCCC
Q 018652          110 ------LF-------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 ------~~-------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~---~i~~D~vi~a~G~~p~  172 (352)
                            ..       ...+.+.+.+.+++.|++++.++++++++.++++ + .+++.+++   ++.+|+||.|.|....
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH-V-VVEVEGPDGPRSLTTRYVVGCDGGRST  167 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-E-EEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCcEEEEeCEEEEccCcccH
Confidence                  00       1234566777778889999999999999865444 3 46666664   7999999999998753

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.11  E-value=1.2e-05  Score=75.71  Aligned_cols=100  Identities=18%  Similarity=0.247  Sum_probs=73.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCc-EEEEecCCccccc----------------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR----------------------------------------  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~~~~~~----------------------------------------  109 (352)
                      ..+|+|||||+.|+.+|..|++.|.+ |+|+++.+.+.+.                                        
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            45899999999999999999999999 9999986532100                                        


Q ss_pred             --------------------ccCHHHHHHHHHHHHh-CC-cEEEcCCeEEEEEecCCCcEEEEEcCC---C--CEEEcCE
Q 018652          110 --------------------LFTPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADT  162 (352)
Q Consensus       110 --------------------~~~~~~~~~l~~~l~~-~g-V~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~  162 (352)
                                          .....+.+.+.+.+.+ .| +++++++++++++. +++ + .+.+.+   |  +++.+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v-~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-R-VLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-E-EEEEEEETTSCEEEEEESE
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-c-EEEEecCCCCCceEEecCE
Confidence                                0001344556666665 35 68999999999986 444 2 355544   7  4799999


Q ss_pred             EEEccCCCCCc
Q 018652          163 IVIGIGAKPTV  173 (352)
Q Consensus       163 vi~a~G~~p~~  173 (352)
                      ||.|.|.....
T Consensus       161 vV~AdG~~S~v  171 (410)
T 3c96_A          161 LVGADGIHSAV  171 (410)
T ss_dssp             EEECCCTTCHH
T ss_pred             EEECCCccchh
Confidence            99999987643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.10  E-value=1.7e-05  Score=76.69  Aligned_cols=102  Identities=23%  Similarity=0.345  Sum_probs=72.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhC---CCcEEEEecCCccccc----------------------------cc---------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQR----------------------------LF---------  111 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~---g~~Vtvv~~~~~~~~~----------------------------~~---------  111 (352)
                      .+|+|||||+.|+.+|..|++.   |.+|+++++++ +-..                            .+         
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   81 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   81 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence            4699999999999999999999   99999999874 1000                            00         


Q ss_pred             CH-H-----------HHHHHHHHHHhCCcEEEcCCeEEEEEecC--CCcEEEEEcCCCC--EEEcCEEEEccCCCCCchh
Q 018652          112 TP-S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP  175 (352)
Q Consensus       112 ~~-~-----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~--~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~  175 (352)
                      +. .           +...+.+.+++.||+++.++ +..++...  ++....+.+.+|+  .+.+|.+|+|+|.+|....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~  160 (499)
T 1xdi_A           82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP  160 (499)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence            10 1           12234567788999999886 55554310  1133456677776  7999999999999886543

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.10  E-value=9.1e-06  Score=77.84  Aligned_cols=94  Identities=19%  Similarity=0.284  Sum_probs=66.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------ccC-HHH-
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LFT-PSL-  115 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----------------------------------~~~-~~~-  115 (352)
                      .+++|||+|+.|+.+|..|++.|.+|+++++++ +-..                                  ..+ +.+ 
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   85 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKLG   85 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHHH
Confidence            579999999999999999999999999999875 1000                                  001 001 


Q ss_pred             ----------HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          116 ----------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       116 ----------~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                                ...+.+.+++.||+++.++.+ .++.   .   .+.+. |+++++|.+|+|||.+|...
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~~---~---~v~v~-g~~~~~d~lViATGs~p~~p  146 (464)
T 2eq6_A           86 GWRDQVVKKLTGGVGTLLKGNGVELLRGFAR-LVGP---K---EVEVG-GERYGAKSLILATGSEPLEL  146 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCEE-EEET---T---EEEET-TEEEEEEEEEECCCEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEeeeEE-EccC---C---EEEEc-cEEEEeCEEEEcCCCCCCCC
Confidence                      011344567789999988744 3431   2   34445 67899999999999988743

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.09  E-value=9.7e-06  Score=77.98  Aligned_cols=98  Identities=23%  Similarity=0.334  Sum_probs=69.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-----------------------------------------c
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------------------R  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-----------------------------------------~  109 (352)
                      ..+|+|||||+.|+.+|..|++.|.+|++++++. +..                                         .
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   89 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHL   89 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGC
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccC
Confidence            3579999999999999999999999999999863 100                                         0


Q ss_pred             ccC------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCch
Q 018652          110 LFT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       110 ~~~------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~  174 (352)
                      .++            ..+...+.+.+++.||+++.++ +..++   ... ..+.+.+|+  ++.+|.+|+|+|.+|...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~---~~~-~~v~~~~g~~~~~~~d~lviAtGs~p~~p  163 (479)
T 2hqm_A           90 TFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFNK---DGN-VEVQKRDNTTEVYSANHILVATGGKAIFP  163 (479)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEECT---TSC-EEEEESSSCCEEEEEEEEEECCCEEECCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEee---CCE-EEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence            000            0111234456678899999874 44442   222 356667776  799999999999988754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.09  E-value=1.1e-05  Score=77.32  Aligned_cols=96  Identities=24%  Similarity=0.285  Sum_probs=68.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-----------------------------------cCH---
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------------------------FTP---  113 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----------------------------------~~~---  113 (352)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.. +....                                   ++.   
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   82 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIA   82 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHHH
Confidence            469999999999999999999999999999862 11000                                   000   


Q ss_pred             ---------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCc
Q 018652          114 ---------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTV  173 (352)
Q Consensus       114 ---------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~  173 (352)
                               .+...+.+.+++.||+++.++.+. +  + . ....+.+.+|  +++.+|.+|+|+|.+|..
T Consensus        83 ~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-i--d-~-~~v~V~~~~G~~~~~~~d~lViAtG~~~~~  148 (464)
T 2a8x_A           83 YDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-A--D-A-NTLLVDLNDGGTESVTFDNAIIATGSSTRL  148 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-S--S-S-SEEEEEETTSCCEEEEEEEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-e--c-C-CeEEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence                     011223566778899999887542 2  2 2 2235667777  679999999999998864

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.09  E-value=1.6e-05  Score=76.60  Aligned_cols=97  Identities=20%  Similarity=0.270  Sum_probs=67.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc---------------------------c---------C--
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------------------------F---------T--  112 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~---------------------------~---------~--  112 (352)
                      ..+|+|||||+.|+.+|..|++.|.+|+++++++.+-..+                           +         +  
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  104 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQ  104 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCHH
Confidence            3689999999999999999999999999999865431100                           0         0  


Q ss_pred             ----------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCC
Q 018652          113 ----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPT  172 (352)
Q Consensus       113 ----------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~  172 (352)
                                ..+...+...+++.+++++.+... .+    +.....+.+.+|  +++.+|.+|+|||.+|.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~----~~~~~~v~~~~g~~~~~~~d~lViATGs~p~  171 (491)
T 3urh_A          105 KMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGK-VL----GQGKVSVTNEKGEEQVLEAKNVVIATGSDVA  171 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EC----SSSEEEEECTTSCEEEEECSEEEECCCEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee----cCCEEEEEeCCCceEEEEeCEEEEccCCCCC
Confidence                      011123445577889999887532 22    122345667777  47999999999998874

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.09  E-value=3.5e-05  Score=75.37  Aligned_cols=55  Identities=20%  Similarity=0.398  Sum_probs=44.8

Q ss_pred             HHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          117 QRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       117 ~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ..+.+.+++. |++++.+ +|+++...+++.+..|.+.+|+++.+|.||.|+|....
T Consensus       198 ~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          198 DFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            3455566677 9999999 99999865566667888889988999999999998764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.09  E-value=2.5e-05  Score=71.27  Aligned_cols=164  Identities=17%  Similarity=0.172  Sum_probs=100.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCccccc-------------------------------------cc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR-------------------------------------LF  111 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~~-------------------------------------~~  111 (352)
                      ...|+|||+|..|+.+|..|+++  |.+|+|+++.+.+...                                     ..
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            46899999999999999999997  9999999987532100                                     00


Q ss_pred             CHHHHHHHHHHHHh-CCcEEEcCCeEEEEEecCC----------------C--cEEEEEc------C--------CCCEE
Q 018652          112 TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSD----------------G--RVAAVKL------E--------DGSTI  158 (352)
Q Consensus       112 ~~~~~~~l~~~l~~-~gV~~~~~~~v~~i~~~~~----------------~--~~~~v~~------~--------~g~~i  158 (352)
                      ..++.+.+.+.+.+ .|++++.++.+.++...++                +  ++..|..      .        +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            12334556666666 5999999999998865432                2  4555543      1        22479


Q ss_pred             EcCEEEEccCCCCCc-h----hhhhcCCccc-CCc--EEeCC--C---CCC--CCCCEEEecccccc--CCccCCccccc
Q 018652          159 DADTIVIGIGAKPTV-S----PFERVGLNSS-VGG--IQVDG--Q---FRT--RMPGIFAIGDVAAF--PLKMYDRTARV  221 (352)
Q Consensus       159 ~~D~vi~a~G~~p~~-~----~~~~~gl~~~-~g~--i~vd~--~---~~t--~~~~Iya~GD~a~~--~~~~~~~~~~~  221 (352)
                      .++.||.|+|..... .    .+.+.++... .|.  ...+.  .   -.|  -+|++|++|=.+.-  ..+..|.    
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~~g~~rmgp----  314 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEIDGANRMGP----  314 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHHHTCEECCS----
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhhcCCCCCCc----
Confidence            999999999987652 1    2334444311 111  11110  0   012  26999999987652  1222222    


Q ss_pred             ccHHHHHHHHHHHHHHHh
Q 018652          222 EHVDHARQSAQHCIKALL  239 (352)
Q Consensus       222 ~~~~~A~~~g~~aa~~i~  239 (352)
                       .+..-...|+.+|+.++
T Consensus       315 -~fg~m~~sg~~~a~~~~  331 (344)
T 3jsk_A          315 -TFGAMALSGVKAAHEAI  331 (344)
T ss_dssp             -CCHHHHHHHHHHHHHHH
T ss_pred             -ccceeeecCHHHHHHHH
Confidence             11112355777777665

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.08  E-value=7.2e-06  Score=78.49  Aligned_cols=93  Identities=24%  Similarity=0.333  Sum_probs=66.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------------------------c--------ccC----
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------R--------LFT----  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------------------------~--------~~~----  112 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.. +-.                           .        .++    
T Consensus         6 ~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (463)
T 4dna_A            6 YDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR-YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKL   84 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHHH
Confidence            479999999999999999999999999999842 110                           0        000    


Q ss_pred             --------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc-CCCCEEEcCEEEEccCCCCC
Q 018652          113 --------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       113 --------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~-~~g~~i~~D~vi~a~G~~p~  172 (352)
                              ..+...+.+.+++.|++++.+ .+..++   ..   .+.+ .+++.+.+|.+|+|+|.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~---~~---~v~~~~~~~~~~~d~lviAtG~~p~  146 (463)
T 4dna_A           85 VAAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG---PN---TVKLLASGKTVTAERIVIAVGGHPS  146 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS---SS---EEEETTTTEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee---CC---EEEEecCCeEEEeCEEEEecCCCcc
Confidence                    122334556677789999987 344442   11   4455 57778999999999999886

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.07  E-value=2.1e-05  Score=76.11  Aligned_cols=102  Identities=20%  Similarity=0.227  Sum_probs=77.1

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------cc----------------
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------RL----------------  110 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------~~----------------  110 (352)
                      ....+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..                      ..                
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   88 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPI   88 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceec
Confidence            3456899999999999999999999999999997632100                      00                


Q ss_pred             ----c-----------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC---EEEcCEEEEccCCCCC
Q 018652          111 ----F-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKPT  172 (352)
Q Consensus       111 ----~-----------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~---~i~~D~vi~a~G~~p~  172 (352)
                          .           ...+.+.+.+.+++.|++++.++++++++.+++ .+ .+++.++.   ++.+|+||.|.|....
T Consensus        89 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S~  166 (500)
T 2qa1_A           89 DFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA-GV-TVEVRGPEGKHTLRAAYLVGCDGGRSS  166 (500)
T ss_dssp             EGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECCCTTCH
T ss_pred             ccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC-eE-EEEEEcCCCCEEEEeCEEEECCCcchH
Confidence                0           023456667777888999999999999986544 33 46666664   7999999999998753

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.07  E-value=2.2e-05  Score=75.03  Aligned_cols=93  Identities=19%  Similarity=0.287  Sum_probs=66.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------------ccc-------C-
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------RLF-------T-  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------------~~~-------~-  112 (352)
                      .+++|||+|+.|+.+|..|++.|.+|+++++. .+-.                               ..+       + 
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCccCH
Confidence            57999999999999999999999999999984 2200                               000       0 


Q ss_pred             HHH-----------HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          113 PSL-----------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       113 ~~~-----------~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      +.+           ...+.+.+++.||+++.++.+. ++   ..   .+.+.+ +++++|.+|+|||.+|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~---~~---~v~v~~-~~~~~d~lviATGs~p~~  148 (458)
T 1lvl_A           85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD---GK---QVEVDG-QRIQCEHLLLATGSSSVE  148 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE---TT---EEEETT-EEEECSEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc---CC---EEEEee-EEEEeCEEEEeCCCCCCC
Confidence            011           1113456778999999987543 33   11   455555 679999999999998864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.07  E-value=5e-06  Score=80.45  Aligned_cols=95  Identities=22%  Similarity=0.391  Sum_probs=60.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----------------------------------ccC-----
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LFT-----  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----------------------------------~~~-----  112 (352)
                      .+|+|||||+.|+.+|..|++.|.+|+++++++ +...                                  .++     
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLV   81 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHHH
Confidence            469999999999999999999999999999874 1000                                  000     


Q ss_pred             -------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC-------------CCEEEcCEEEEccCCCCC
Q 018652          113 -------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-------------GSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       113 -------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~-------------g~~i~~D~vi~a~G~~p~  172 (352)
                             ..+...+.+.+++.||+++.++. ..++.   .   .+.+.+             ++++.+|.+|+|+|.+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~id~---~---~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~  154 (500)
T 1onf_A           82 ERRDKYIQRLNNIYRQNLSKDKVDLYEGTA-SFLSE---N---RILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV  154 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCC-CCC--------------------------------CBSSEEECCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEeeC---C---EEEEEeccccccccccCCCceEEEeCEEEECCCCCCC
Confidence                   11122344556788999998863 23321   1   233322             567999999999999887


Q ss_pred             ch
Q 018652          173 VS  174 (352)
Q Consensus       173 ~~  174 (352)
                      ..
T Consensus       155 ~p  156 (500)
T 1onf_A          155 FP  156 (500)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.05  E-value=1.9e-06  Score=90.42  Aligned_cols=93  Identities=20%  Similarity=0.264  Sum_probs=70.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~~~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      +++|+|||||+.|+.+|..|++.|. +|+|+++.+.+..        ..++.+..++..+.+++.||++++++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            5689999999999999999999999 7999998764421        113455666667888999999999876521   


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccCC-CCC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT  172 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~  172 (352)
                         .   .+.+++++++.+|.||+|||. +|.
T Consensus       264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          264 ---N---EITLNTLKEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             ---T---SBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred             ---c---eEEhhhcCccCCCEEEEecCCCCCC
Confidence               0   233445555789999999998 475

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.05  E-value=1.9e-06  Score=82.52  Aligned_cols=91  Identities=14%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCccc--------ccc-cCHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL--------QRL-FTPSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~--------~~~-~~~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      ..++++|||+|+.|+.+|..|++.|  .+|+++++.+.+.        +.. ...++...+.+.+++.||+++.++.+. 
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-   83 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-   83 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence            4578999999999999999999988  9999999887654        111 123566777888888999999987651 


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                            .   .|.+.+. .+.+|.||+|||..|
T Consensus        84 ------~---~V~~~~~-~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ------R---DVTVQEL-QDAYHAVVLSYGAED  106 (460)
T ss_dssp             ------T---TBCHHHH-HHHSSEEEECCCCCE
T ss_pred             ------e---EEEeccc-eEEcCEEEEecCcCC
Confidence                  1   1333332 478999999999885

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.05  E-value=7.2e-06  Score=78.92  Aligned_cols=97  Identities=24%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------ccCH-H-
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFTP-S-  114 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----------------------------------~~~~-~-  114 (352)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+-..                                   .++. . 
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~~   86 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDML   86 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHHH
Confidence            57999999999999999999999999999985433100                                   0000 0 


Q ss_pred             ----------HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC------------CEEEcCEEEEccCCCCC
Q 018652          115 ----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG------------STIDADTIVIGIGAKPT  172 (352)
Q Consensus       115 ----------~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g------------~~i~~D~vi~a~G~~p~  172 (352)
                                +...+.+.+++.||+++.++.+. ++   .+. ..+.+.+|            +++.+|.+|+|+|.+|.
T Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~---~~~-v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~  161 (482)
T 1ojt_A           87 RAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LD---PHH-LEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT  161 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EE---TTE-EEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-cc---CCE-EEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence                      11123456678899999887543 32   222 24444455            57999999999999886


Q ss_pred             c
Q 018652          173 V  173 (352)
Q Consensus       173 ~  173 (352)
                      .
T Consensus       162 ~  162 (482)
T 1ojt_A          162 K  162 (482)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.03  E-value=1.1e-05  Score=77.85  Aligned_cols=98  Identities=21%  Similarity=0.294  Sum_probs=66.6

Q ss_pred             CeEEEECCChHHHHHHHHHHh-CCCcEEEEec--------CCccccc---------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFP--------ENHLLQR---------------------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtvv~~--------~~~~~~~---------------------------------  109 (352)
                      .+++|||||+.|+.+|..|++ .|.+|+++++        ...+-..                                 
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   83 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELD   83 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECC
T ss_pred             ccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcccC
Confidence            479999999999999999999 9999999992        2221000                                 


Q ss_pred             ----ccC-HH-----------HHHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEc---CCC---CEEEcCEEEEc
Q 018652          110 ----LFT-PS-----------LAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKL---EDG---STIDADTIVIG  166 (352)
Q Consensus       110 ----~~~-~~-----------~~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g---~~i~~D~vi~a  166 (352)
                          .++ +.           +...+.+.+++. ||+++.++ +..++.   .. ..+..   .+|   +++.+|.+|+|
T Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~~---~~-v~v~~~~~~~g~~~~~~~~d~lviA  158 (490)
T 1fec_A           84 RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQDN---HT-VLVRESADPNSAVLETLDTEYILLA  158 (490)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEEET---TE-EEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEeeC---CE-EEEEeeccCCCCceEEEEcCEEEEe
Confidence                000 01           112334456778 99999886 556642   22 23332   366   67999999999


Q ss_pred             cCCCCCch
Q 018652          167 IGAKPTVS  174 (352)
Q Consensus       167 ~G~~p~~~  174 (352)
                      ||.+|...
T Consensus       159 tGs~p~~p  166 (490)
T 1fec_A          159 TGSWPQHL  166 (490)
T ss_dssp             CCEEECCC
T ss_pred             CCCCCCCC
Confidence            99988643

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.03  E-value=1.6e-06  Score=83.01  Aligned_cols=89  Identities=15%  Similarity=0.203  Sum_probs=68.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHh-C------CCcEEEEecCCccccc---------ccCHHHHHHHHHHHHhCCcEEEcCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVG-W------KLDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKGA  134 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~-~------g~~Vtvv~~~~~~~~~---------~~~~~~~~~l~~~l~~~gV~~~~~~  134 (352)
                      .++|+|||+|+.|+.+|..|++ .      +.+|+++++.+.+...         ....++...+.+.+++.||+++.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            4689999999999999999999 7      9999999988654321         1233566777888888999999885


Q ss_pred             eEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          135 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       135 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      .+     +  .   .|.++++ ++.+|.||+|+|..
T Consensus        83 ~v-----~--~---~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV-----G--E---HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB-----T--T---TBCHHHH-HHHSSEEEECCCCC
T ss_pred             EE-----C--C---EEEECCC-eEeCCEEEEeeCCC
Confidence            43     1  1   2344444 47899999999997

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.03  E-value=2.1e-05  Score=81.98  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=71.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-------c----CHHHHHHHHHHHHhC-CcEEEcCCeEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------F----TPSLAQRYEQLYQQN-GVKFVKGASIKN  138 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-------~----~~~~~~~l~~~l~~~-gV~~~~~~~v~~  138 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+....       +    ..+....+.+.+.+. +++++.++.+..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            3579999999999999999999999999999876542111       1    123344455556664 999999999988


Q ss_pred             EEecCCCcEEEEEc---------------CCCCEEEcCEEEEccCCCCCc
Q 018652          139 LEAGSDGRVAAVKL---------------EDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       139 i~~~~~~~~~~v~~---------------~~g~~i~~D~vi~a~G~~p~~  173 (352)
                      +..  ++....+..               .++.++.+|.+|+|||..|..
T Consensus       208 i~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          208 SYD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             EET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             eec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            863  222222211               112368999999999998764

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.02  E-value=2.3e-06  Score=86.10  Aligned_cols=88  Identities=19%  Similarity=0.185  Sum_probs=67.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----------ccCHHHHHHHHHHHHhC-CcEEEcCCeEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNL  139 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----------~~~~~~~~~l~~~l~~~-gV~~~~~~~v~~i  139 (352)
                      .++|+|||||+.|+.+|..|+++|.+|+|+++++.+...          .....+..++.+.+++. ||+++.++.++  
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~--  468 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMT--  468 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCC--
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeec--
Confidence            468999999999999999999999999999987643210          01235566777888887 99999886431  


Q ss_pred             EecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          140 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       140 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                                  ..+++++.+|.+|+|+|..|.
T Consensus       469 ------------~~~~~~~~~d~lvlAtG~~~~  489 (690)
T 3k30_A          469 ------------GDDIVEFGFEHVITATGATWR  489 (690)
T ss_dssp             ------------HHHHHHTTCCEEEECCCEEEC
T ss_pred             ------------HHHHhhcCCCEEEEcCCCccc
Confidence                        223446889999999999854

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.02  E-value=1.4e-07  Score=88.85  Aligned_cols=38  Identities=29%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             CccCCceEEEECC----C--cEEEeCCCeEEecCeEEEccCCCCC
Q 018652            1 MIYQDPVTSIDIE----K--QTLITNSGKLLKYGSLIVATGCTAS   39 (352)
Q Consensus         1 ~~~~~~V~~id~~----~--~~V~~~~g~~~~yd~lViAtG~~~~   39 (352)
                      ++++++|+++..+    +  ..|.++++ ++.+|+||+|||+.+.
T Consensus       126 i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          126 ILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSM  169 (401)
T ss_dssp             EECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSC
T ss_pred             EEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccC
Confidence            3578899998754    2  35666666 7999999999999873

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.01  E-value=1e-05  Score=78.11  Aligned_cols=96  Identities=22%  Similarity=0.318  Sum_probs=65.4

Q ss_pred             CeEEEECCChHHHHHHHHHHh-CCCcEEEEec--------CCccccc---------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFP--------ENHLLQR---------------------------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtvv~~--------~~~~~~~---------------------------------  109 (352)
                      .+++|||||+.|+.+|..|++ .|.+|+|+++        ...+-..                                 
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~   87 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEFD   87 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEECC
T ss_pred             cCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcccC
Confidence            579999999999999999999 9999999992        2221000                                 


Q ss_pred             ----ccC-HHH-----------HHHHHHHHHhC-CcEEEcCCeEEEEEecCCCcEEEEEcC---C-----CCEEEcCEEE
Q 018652          110 ----LFT-PSL-----------AQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE---D-----GSTIDADTIV  164 (352)
Q Consensus       110 ----~~~-~~~-----------~~~l~~~l~~~-gV~~~~~~~v~~i~~~~~~~~~~v~~~---~-----g~~i~~D~vi  164 (352)
                          .++ +.+           ...+...+++. ||+++.++ +..++.   .   .|.+.   +     ++++.+|.+|
T Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i~~---~---~v~v~~~~~~~~~~~~~~~~d~lV  160 (495)
T 2wpf_A           88 GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGW-GSLESK---N---VVVVRETADPKSAVKERLQADHIL  160 (495)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESE-EEEEET---T---EEEEESSSSTTSCEEEEEEEEEEE
T ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeE-EEEeeC---C---EEEEeecCCccCCCCeEEEcCEEE
Confidence                000 011           11233456777 99999885 555542   2   33343   4     6679999999


Q ss_pred             EccCCCCCch
Q 018652          165 IGIGAKPTVS  174 (352)
Q Consensus       165 ~a~G~~p~~~  174 (352)
                      +|||.+|...
T Consensus       161 iATGs~p~~p  170 (495)
T 2wpf_A          161 LATGSWPQMP  170 (495)
T ss_dssp             ECCCEEECCC
T ss_pred             EeCCCCcCCC
Confidence            9999988643

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.00  E-value=6.6e-05  Score=70.63  Aligned_cols=50  Identities=22%  Similarity=0.408  Sum_probs=39.7

Q ss_pred             HHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       120 ~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      .+.+++.|+++++++.|++|..+ ++.+..|.+. |+++.+|.||+++|...
T Consensus       203 ~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~-g~~~~ad~VV~a~~~~~  252 (425)
T 3ka7_A          203 ETVISANGGKIHTGQEVSKILIE-NGKAAGIIAD-DRIHDADLVISNLGHAA  252 (425)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEET-TEEEECSEEEECSCHHH
T ss_pred             HHHHHHcCCEEEECCceeEEEEE-CCEEEEEEEC-CEEEECCEEEECCCHHH
Confidence            34557789999999999999864 4556557664 77899999999998754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.00  E-value=3.9e-05  Score=74.63  Aligned_cols=55  Identities=16%  Similarity=0.266  Sum_probs=43.8

Q ss_pred             HHHHHHHHh-CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          117 QRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       117 ~~l~~~l~~-~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ..+.+.+++ .|++++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|....
T Consensus       179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            344556667 89999999 59999865556666788888878999999999998764

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.00  E-value=5.2e-05  Score=73.39  Aligned_cols=55  Identities=16%  Similarity=0.262  Sum_probs=45.0

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ..+.+.+++.|++++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|....
T Consensus       177 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          177 RYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            44556667789999999 89999875566666788889988999999999998654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.99  E-value=6.7e-06  Score=82.50  Aligned_cols=87  Identities=17%  Similarity=0.288  Sum_probs=65.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----ccC-----HHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFT-----PSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~~~-----~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      .++|+|||||+.|+.+|..|++.|.+|+|+++++.+...     .++     .+....+.+.+++.||++++++.+..  
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--  450 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA--  450 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence            468999999999999999999999999999987654211     111     13345566778888999998875421  


Q ss_pred             ecCCCcEEEEEcCCCCEE-EcCEEEEccCCCCCch
Q 018652          141 AGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVS  174 (352)
Q Consensus       141 ~~~~~~~~~v~~~~g~~i-~~D~vi~a~G~~p~~~  174 (352)
                                     ..+ .+|.||+|||.+|...
T Consensus       451 ---------------~~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          451 ---------------DQLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             ---------------SSSCCSSEEEECCCEEECCC
T ss_pred             ---------------HHhhcCCEEEEccCCCcCCC
Confidence                           123 8999999999988754

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.99  E-value=4.5e-05  Score=78.37  Aligned_cols=55  Identities=27%  Similarity=0.378  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      +...+.+.+++.|++++.++.|+++... ++.+..|.+.+| ++.+|.||+|+|...
T Consensus       153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          153 AVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECCc-EEECCEEEECCccch
Confidence            3445666778899999999999999864 455556777777 799999999999864

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.99  E-value=1.6e-05  Score=74.72  Aligned_cols=63  Identities=24%  Similarity=0.254  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEE---------EEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhh-hcCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIK---------NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGL  181 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~---------~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~-~~gl  181 (352)
                      +...+.+.+++.|++++.+++|+         ++... ++.+ .|.+.+| ++.+|.||+|+|.... .+++ .+++
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s~-~l~~~~~g~  246 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAGP-ALVEQGLGL  246 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGHH-HHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccHH-HHHHHhcCC
Confidence            44556677788899999999999         87643 3333 5666666 7999999999997642 3444 4443

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.98  E-value=6.8e-05  Score=69.94  Aligned_cols=59  Identities=24%  Similarity=0.374  Sum_probs=42.0

Q ss_pred             HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcC
Q 018652          118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG  180 (352)
Q Consensus       118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g  180 (352)
                      .+.+.+++.|++++.+++|+++..++ +.+ .|.+.+| ++.+|.||+|+|.... .+++.++
T Consensus       158 ~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~v-~v~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g  216 (397)
T 2oln_A          158 ALFTLAQAAGATLRAGETVTELVPDA-DGV-SVTTDRG-TYRAGKVVLACGPYTN-DLLEPLG  216 (397)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEEET-TEE-EEEESSC-EEEEEEEEECCGGGHH-HHHGGGT
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEcC-CeE-EEEECCC-EEEcCEEEEcCCcChH-HHhhhcC
Confidence            34555677899999999999998643 333 4666555 7999999999997633 3444443

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.96  E-value=1.8e-05  Score=75.96  Aligned_cols=97  Identities=19%  Similarity=0.314  Sum_probs=67.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------ccC---
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------LFT---  112 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----------------------------------~~~---  112 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|++++++. +-..                                   .++   
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   98 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRV   98 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            4689999999999999999999999999999763 1000                                   000   


Q ss_pred             ---------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          113 ---------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       113 ---------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                               ..+...+...+++.||+++.+. +..+..  ...  .+. .+++++.+|.+|+|||.+|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~~--~~~--~v~-~~g~~~~~d~lviAtG~~p~~p  163 (478)
T 3dk9_A           99 IKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH-AAFTSD--PKP--TIE-VSGKKYTAPHILIATGGMPSTP  163 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEECSC--SSC--EEE-ETTEEEECSCEEECCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEeeC--CeE--EEE-ECCEEEEeeEEEEccCCCCCCC
Confidence                     1122344556778899999875 333321  111  344 4667899999999999988644

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.91  E-value=0.00012  Score=68.93  Aligned_cols=49  Identities=16%  Similarity=0.308  Sum_probs=38.1

Q ss_pred             HHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       120 ~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      .+.+++.|++++++++|++|... ++.+  | ..+|+++++|.||+++|....
T Consensus       196 ~~~~~~~G~~i~~~~~V~~i~~~-~~~v--V-~~~g~~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          196 ERIIMENKGKILTRKEVVEINIE-EKKV--Y-TRDNEEYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHHTTTCEEESSCCEEEEETT-TTEE--E-ETTCCEEECSEEEECSCHHHH
T ss_pred             HHHHHHCCCEEEcCCeEEEEEEE-CCEE--E-EeCCcEEEeCEEEECCCHHHH
Confidence            34456779999999999999854 4444  4 467888999999999997543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.87  E-value=3.9e-05  Score=73.59  Aligned_cols=96  Identities=24%  Similarity=0.373  Sum_probs=66.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc----------------------------------ccc--------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL----------------------------------LQR--------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~----------------------------------~~~--------  109 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++++.+                                  +..        
T Consensus         4 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~   83 (476)
T 3lad_A            4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV   83 (476)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            47999999999999999999999999999987510                                  000        


Q ss_pred             ccC------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCC
Q 018652          110 LFT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 ~~~------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~  172 (352)
                      .++            ..+...+...+++.||+++.+... .++   . ....+...+|  +++.+|.+|+|||.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~~---~-~~~~v~~~~g~~~~~~~d~lvlAtG~~p~  155 (476)
T 3lad_A           84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGK-LLA---G-KKVEVTAADGSSQVLDTENVILASGSKPV  155 (476)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEE-ECS---T-TCEEEECTTSCEEEECCSCEEECCCEEEC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Eec---C-CEEEEEcCCCceEEEEcCEEEEcCCCCCC
Confidence            000            011222345567789999987532 222   2 2235667777  47999999999999886

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.86  E-value=0.00012  Score=70.73  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPT  172 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~  172 (352)
                      +...+.+.+.+.|++++.+++|+++..++  .+..|.+   .+|+  ++.+|.||.|+|.-..
T Consensus       151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          151 LVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            34455666788899999999999998643  4456666   3565  7999999999997643

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.84  E-value=6.5e-06  Score=83.34  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=59.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-----cC-----HHHHHHHHHHHHhC------CcEEEcCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FT-----PSLAQRYEQLYQQN------GVKFVKGA  134 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----~~-----~~~~~~l~~~l~~~------gV~~~~~~  134 (352)
                      .++|+|||||+.|+.+|..|+++|.+|+|+++.+.+....     ++     ....+++.+.++..      ++++..++
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~  468 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQK  468 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCe
Confidence            4689999999999999999999999999999876542110     00     12233333333322      45554332


Q ss_pred             eEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          135 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       135 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                                    .+.++++..+.+|.||+|||..|.
T Consensus       469 --------------~v~~~~~~~~~~d~vviAtG~~~~  492 (729)
T 1o94_A          469 --------------PMTADDVLQYGADKVIIATGARWN  492 (729)
T ss_dssp             --------------CCCHHHHHTSCCSEEEECCCEEEC
T ss_pred             --------------EEehhhccccCCCEEEEcCCCCcc
Confidence                          123344556889999999999853

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.84  E-value=7.4e-05  Score=72.55  Aligned_cols=99  Identities=16%  Similarity=0.213  Sum_probs=67.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC--------cccc----------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--------HLLQ----------------------------------  108 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~--------~~~~----------------------------------  108 (352)
                      ...|+|||+|+.|+.+|..|++.|.+|+++++.+        .+-.                                  
T Consensus        32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~~  111 (519)
T 3qfa_A           32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVE  111 (519)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcccC
Confidence            3579999999999999999999999999999742        0000                                  


Q ss_pred             --cccC-H-----------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCC
Q 018652          109 --RLFT-P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT  172 (352)
Q Consensus       109 --~~~~-~-----------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~  172 (352)
                        ..++ +           .+...+...+++.+|+++.+. ...+++    ....+...+|+  ++.+|.+|+|||.+|.
T Consensus       112 ~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~d~----~~v~v~~~~g~~~~i~~d~lViATGs~p~  186 (519)
T 3qfa_A          112 ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFIGP----HRIKATNNKGKEKIYSAERFLIATGERPR  186 (519)
T ss_dssp             SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEET----TEEEEECTTCCCCEEEEEEEEECCCEEEC
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeeC----CEEEEEcCCCCEEEEECCEEEEECCCCcC
Confidence              0000 0           111123345677899998764 444432    12356666664  7999999999999886


Q ss_pred             ch
Q 018652          173 VS  174 (352)
Q Consensus       173 ~~  174 (352)
                      ..
T Consensus       187 ~p  188 (519)
T 3qfa_A          187 YL  188 (519)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.83  E-value=0.00021  Score=70.35  Aligned_cols=53  Identities=21%  Similarity=0.217  Sum_probs=39.9

Q ss_pred             HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCC
Q 018652          118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~  170 (352)
                      .+.+.+++.||+++.++.++++..++++++..|..   .+|+  .+.++.||+|+|.-
T Consensus       148 ~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          148 TLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            34455667899999999999998643566666653   5665  58999999999973

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.80  E-value=0.00011  Score=70.49  Aligned_cols=98  Identities=17%  Similarity=0.282  Sum_probs=69.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc-------------ccc------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------LQR------------------------------  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~-------------~~~------------------------------  109 (352)
                      .|+|||+|..|+.+|..|++.|.+|+|+++...-             +..                              
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            4899999999999999999999999999876100             000                              


Q ss_pred             -----------------------------c------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC-
Q 018652          110 -----------------------------L------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-  153 (352)
Q Consensus       110 -----------------------------~------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~-  153 (352)
                                                   .      .+..+...+.+.+++.||+++.++.+ ++..+ ++.+..+... 
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~  158 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEETT
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEEe
Confidence                                         0      01133445556667789999999999 98754 4555555442 


Q ss_pred             CCCEEEcCEEEEccCCCCC
Q 018652          154 DGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       154 ~g~~i~~D~vi~a~G~~p~  172 (352)
                      ++.++.+|.||+|+|..+.
T Consensus       159 ~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          159 RGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             TEEECCCSEEEECCCCCGG
T ss_pred             CCCeEEeeeEEECCCCCcc
Confidence            2235789999999998764

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.78  E-value=8.7e-05  Score=70.46  Aligned_cols=62  Identities=24%  Similarity=0.410  Sum_probs=45.3

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEec--------------CCCcEEEEEcCCCCEE--EcCEEEEccCCCCCchhhhhcC
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAG--------------SDGRVAAVKLEDGSTI--DADTIVIGIGAKPTVSPFERVG  180 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~--------------~~~~~~~v~~~~g~~i--~~D~vi~a~G~~p~~~~~~~~g  180 (352)
                      ..+.+.+++.|++++.+++|+++..+              +++.+..|.+.+| ++  .+|.||+|+|.... .++..++
T Consensus       185 ~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~-~l~~~~g  262 (448)
T 3axb_A          185 DYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN-RLLNPLG  262 (448)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH-HHHGGGT
T ss_pred             HHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH-HHHHHcC
Confidence            44556677889999999999999851              2445556778888 58  99999999997543 3444433

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.74  E-value=2e-05  Score=73.35  Aligned_cols=88  Identities=15%  Similarity=0.185  Sum_probs=67.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcc----------------------c-cc-----------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL----------------------L-QR-----------------  109 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~----------------------~-~~-----------------  109 (352)
                      .+|+|||||+.|+.+|..|++.  |.+|+|+++.+.+                      . ..                 
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH   80 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence            3699999999999999999998  9999999986543                      0 00                 


Q ss_pred             --------------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          110 --------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       110 --------------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                                    .....+.+.+.+.+++.|++++++++|++++..             +.+.+|.||.|.|....
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-------------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-------------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-------------CGGGCSEEEECCGGGGG
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-------------ccccCCEEEECCCCCch
Confidence                          001345667777888889999999988877521             13689999999997653

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.74  E-value=0.00019  Score=70.33  Aligned_cols=53  Identities=19%  Similarity=0.179  Sum_probs=40.1

Q ss_pred             HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---C--CEEEcCEEEEccCCCC
Q 018652          118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKP  171 (352)
Q Consensus       118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~p  171 (352)
                      .+.+.+++.|++++.+++|+++... ++.+..|.+.+   |  .++.+|.||.|+|.-.
T Consensus       175 ~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          175 EIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            3445567889999999999999864 55555666543   4  3689999999999653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.72  E-value=0.00013  Score=70.16  Aligned_cols=98  Identities=20%  Similarity=0.211  Sum_probs=65.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC--------ccc------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--------HLL------------------------------------  107 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~--------~~~------------------------------------  107 (352)
                      ..|+|||+|+.|+.+|..|++.|.+|+++++.+        .+-                                    
T Consensus         7 ~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~~~   86 (488)
T 3dgz_A            7 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQ   86 (488)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            479999999999999999999999999998521        000                                    


Q ss_pred             ccccC-H-----------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCc
Q 018652          108 QRLFT-P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTV  173 (352)
Q Consensus       108 ~~~~~-~-----------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~  173 (352)
                      ...++ +           .+...+...+++.+|+++.+. +..++    .....+...+|  .++.+|.+|+|||.+|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~~~----~~~v~v~~~~g~~~~~~~d~lViATGs~p~~  161 (488)
T 3dgz_A           87 PVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASFVD----EHTVRGVDKGGKATLLSAEHIVIATGGRPRY  161 (488)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEESS----SSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc----CCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence            00001 0           111123345677899998664 33322    22335666777  479999999999998864


Q ss_pred             h
Q 018652          174 S  174 (352)
Q Consensus       174 ~  174 (352)
                      .
T Consensus       162 p  162 (488)
T 3dgz_A          162 P  162 (488)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.72  E-value=0.0002  Score=68.72  Aligned_cols=99  Identities=22%  Similarity=0.288  Sum_probs=65.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC---C----c--c--------------------------------cc-
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE---N----H--L--------------------------------LQ-  108 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~---~----~--~--------------------------------~~-  108 (352)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.   +    .  +                                +. 
T Consensus         9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   88 (483)
T 3dgh_A            9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNV   88 (483)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence            457999999999999999999999999999831   0    0  0                                00 


Q ss_pred             -c--ccC-HHH-----------HHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC-EEEcCEEEEccCCCCC
Q 018652          109 -R--LFT-PSL-----------AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPT  172 (352)
Q Consensus       109 -~--~~~-~~~-----------~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~  172 (352)
                       .  .++ +.+           ...+...+++.+|+++.+. ...++   . ....+.+.+|+ ++.+|.+|+|||.+|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~~---~-~~v~v~~~~g~~~~~~d~lviATGs~p~  163 (483)
T 3dgh_A           89 DDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGL-GSFVD---S-HTLLAKLKSGERTITAQTFVIAVGGRPR  163 (483)
T ss_dssp             CCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEE---T-TEEEEECTTCCEEEEEEEEEECCCEEEC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEcc---C-CEEEEEeCCCeEEEEcCEEEEeCCCCcC
Confidence             0  001 011           1122345677899998764 23332   1 22356667775 7999999999999886


Q ss_pred             ch
Q 018652          173 VS  174 (352)
Q Consensus       173 ~~  174 (352)
                      ..
T Consensus       164 ~p  165 (483)
T 3dgh_A          164 YP  165 (483)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.71  E-value=0.00017  Score=71.89  Aligned_cols=101  Identities=19%  Similarity=0.265  Sum_probs=74.0

Q ss_pred             CeEEEECCChHHHHHHHHHHh-CCCcEEEEecCCccc--------------------------------------c----
Q 018652           72 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLL--------------------------------------Q----  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtvv~~~~~~~--------------------------------------~----  108 (352)
                      .+|+|||+|+.|+.+|..|++ .|.+|+|+++.+.+.                                      .    
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            479999999999999999999 999999999763210                                      0    


Q ss_pred             --c---------------------ccC-HHHHHHHHHHHHhCCc--EEEcCCeEEEEEecCC--CcEEEEEcC------C
Q 018652          109 --R---------------------LFT-PSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSD--GRVAAVKLE------D  154 (352)
Q Consensus       109 --~---------------------~~~-~~~~~~l~~~l~~~gV--~~~~~~~v~~i~~~~~--~~~~~v~~~------~  154 (352)
                        .                     .+. ..+.+.+.+.+++.|+  +++.++++++++.+++  +....+++.      +
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence              0                     000 1455667778888876  9999999999986542  112244443      4


Q ss_pred             C--CEEEcCEEEEccCCCCC
Q 018652          155 G--STIDADTIVIGIGAKPT  172 (352)
Q Consensus       155 g--~~i~~D~vi~a~G~~p~  172 (352)
                      |  +++.+|+||.|.|....
T Consensus       193 G~~~~i~a~~vVgADG~~S~  212 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGARSN  212 (639)
T ss_dssp             TCEEEEEEEEEEECCCTTCH
T ss_pred             CCeEEEEeCEEEECCCcchH
Confidence            5  47999999999998653

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.60  E-value=0.00044  Score=67.58  Aligned_cols=96  Identities=20%  Similarity=0.333  Sum_probs=68.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------------------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------------------------------------------  108 (352)
                      .+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+..                                           
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            4799999999999999999999999999997632100                                           


Q ss_pred             ------cc--------------------cC-HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---C--C
Q 018652          109 ------RL--------------------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--S  156 (352)
Q Consensus       109 ------~~--------------------~~-~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~  156 (352)
                            +.                    ++ ..+.+.+.+.+++.   +++++++++++.++++ + .+++.+   |  +
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v-~v~~~~~~~G~~~  181 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH-V-RATITDLRTGATR  181 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC-E-EEEEEETTTCCEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE-E-EEEEEECCCCCEE
Confidence                  00                    00 12334455555554   8889999999865444 3 344433   6  4


Q ss_pred             EEEcCEEEEccCCCCC
Q 018652          157 TIDADTIVIGIGAKPT  172 (352)
Q Consensus       157 ~i~~D~vi~a~G~~p~  172 (352)
                      ++.+|+||.|.|....
T Consensus       182 ~i~a~~vVgADG~~S~  197 (549)
T 2r0c_A          182 AVHARYLVACDGASSP  197 (549)
T ss_dssp             EEEEEEEEECCCTTCH
T ss_pred             EEEeCEEEECCCCCcH
Confidence            7999999999998753

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.58  E-value=0.00035  Score=68.98  Aligned_cols=98  Identities=20%  Similarity=0.275  Sum_probs=70.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccc-------------------------------cc--------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ-------------------------------RL--------  110 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~-------------------------------~~--------  110 (352)
                      ..|+|||+|..|+-+|..|++.|  .+|+|+++.+....                               ..        
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~   85 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY   85 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            46999999999999999999999  99999997532100                               00        


Q ss_pred             -------------------------------c---------------CHHHHHHHHHHHHhCC-cEEEcCCeEEEEEecC
Q 018652          111 -------------------------------F---------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGS  143 (352)
Q Consensus       111 -------------------------------~---------------~~~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~  143 (352)
                                                     +               +..+...+.+.+.+.| |+++.++.++++..+ 
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-  164 (602)
T 1kf6_A           86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-  164 (602)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-
T ss_pred             HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-
Confidence                                           0               0123334445556677 999999999999754 


Q ss_pred             CCcEEEEE---cCCCC--EEEcCEEEEccCCC
Q 018652          144 DGRVAAVK---LEDGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       144 ~~~~~~v~---~~~g~--~i~~D~vi~a~G~~  170 (352)
                      ++.+..+.   +.+|+  .+.++.||+|+|..
T Consensus       165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             TTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            45554443   36776  68999999999963

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.56  E-value=0.00045  Score=68.21  Aligned_cols=100  Identities=17%  Similarity=0.323  Sum_probs=65.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC-Ccc------ccc-------------------------------cc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL------LQR-------------------------------LF  111 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~------~~~-------------------------------~~  111 (352)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++. +..      +..                               .+
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~  185 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSL  185 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCccc
Confidence            3458999999999999999999999999999862 110      000                               00


Q ss_pred             C--------HHHHHH-----------HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCC
Q 018652          112 T--------PSLAQR-----------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAK  170 (352)
Q Consensus       112 ~--------~~~~~~-----------l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~  170 (352)
                      +        +.+.++           +...+++.+|+++.+. ...++.    ....+...+|  +++.+|.||+|||.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~~~~----~~v~v~~~~g~~~~~~~d~lviAtGs~  260 (598)
T 2x8g_A          186 DRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAK-GRLISP----HEVQITDKNQKVSTITGNKIILATGER  260 (598)
T ss_dssp             CGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEEET----TEEEEECTTCCEEEEEEEEEEECCCEE
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEcCC----CEEEEEeCCCCeEEEEeCEEEEeCCCC
Confidence            0        111111           1223567789998653 344432    1224555667  468999999999998


Q ss_pred             CCch
Q 018652          171 PTVS  174 (352)
Q Consensus       171 p~~~  174 (352)
                      |...
T Consensus       261 p~~p  264 (598)
T 2x8g_A          261 PKYP  264 (598)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            8643

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.56  E-value=0.00017  Score=69.52  Aligned_cols=33  Identities=24%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++|||+|+.|+.+|..|++.|.+|+++++++
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            479999999999999999999999999999864

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.52  E-value=0.0012  Score=64.79  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ....|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~   64 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQ   64 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4568999999999999999999999999999865

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.47  E-value=0.00032  Score=68.38  Aligned_cols=32  Identities=16%  Similarity=0.329  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..|+|||+|..|+-+|..|++ |.+|+|+++.+
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~   40 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP   40 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence            479999999999999999999 99999999764

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.46  E-value=0.00016  Score=69.60  Aligned_cols=49  Identities=18%  Similarity=0.332  Sum_probs=38.2

Q ss_pred             HHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          117 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       117 ~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                      +.+.+.+.+.|+++++++.|++|..+ ++   .+++.+|+++.||.||.+++.
T Consensus       226 ~~l~~~l~~~g~~i~~~~~V~~I~~~-~~---~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          226 IAVANTLPKEKTRFGEKGKVTKVNAN-NK---TVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHTSCGGGEEESGGGCEEEEETT-TT---EEEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHhcCeeeecceEEEEEEcc-CC---EEEEcCCCEEECCEEEECCCH
Confidence            34444456678999999999999853 33   467899999999999998764

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.45  E-value=0.00096  Score=66.03  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ..|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus        19 ~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~   50 (621)
T 2h88_A           19 FDAVVVGAGGAGLRAAFGLSEAGFNTACVTKL   50 (621)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            37999999999999999999999999999875

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.40  E-value=0.00039  Score=68.98  Aligned_cols=56  Identities=14%  Similarity=0.279  Sum_probs=44.0

Q ss_pred             CcEEEcCCeEEEEEecCC-CcEEEEEcC---CCC--EEEcCEEEEccCCCCCchhhhhcCCc
Q 018652          127 GVKFVKGASIKNLEAGSD-GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN  182 (352)
Q Consensus       127 gV~~~~~~~v~~i~~~~~-~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~  182 (352)
                      |+++++++.|++|..+++ +++..|++.   +|+  ++++|.||+|+|..|++.+|..+|+.
T Consensus       274 nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG  335 (623)
T 3pl8_A          274 RFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG  335 (623)
T ss_dssp             EEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSS
T ss_pred             CEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCC
Confidence            689999999999986432 366667664   454  68899999999999998888777654

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.35  E-value=0.001  Score=66.53  Aligned_cols=32  Identities=28%  Similarity=0.300  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHh-----CCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVG-----WKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~-----~g~~Vtvv~~~  103 (352)
                      ..|+|||+|+.|+-+|..|++     .|.+|+|+++.
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~   45 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   45 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence            369999999999999999999     99999999975

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.33  E-value=0.0013  Score=62.47  Aligned_cols=41  Identities=27%  Similarity=0.510  Sum_probs=34.0

Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          128 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       128 V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      +++++++.|++|+..+++  ..|.+.+|+++.+|.||++++..
T Consensus       248 ~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vi~a~p~~  288 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSC--YSLELDNGVTLDADSVIVTAPHK  288 (470)
T ss_dssp             EEEECSCCEEEEEECSSS--EEEEESSSCEEEESEEEECSCHH
T ss_pred             CEEEeCCceEEEEEcCCe--EEEEECCCCEEECCEEEECCCHH
Confidence            589999999999865443  36888999889999999998753

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.33  E-value=0.0017  Score=64.75  Aligned_cols=51  Identities=18%  Similarity=0.165  Sum_probs=37.5

Q ss_pred             HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc---CCCC--EEEcCEEEEccCCC
Q 018652          119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       119 l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~  170 (352)
                      +.+.+.+.||+++.++.+.++..+ ++++..+..   .+|+  .+.++.||+|+|.-
T Consensus       164 L~~~a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          164 VANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            344455678999999999998753 566555543   5676  48999999999864

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.19  E-value=0.0017  Score=65.84  Aligned_cols=42  Identities=17%  Similarity=0.365  Sum_probs=34.8

Q ss_pred             CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          126 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       126 ~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                      .|+++++++.|++|+..+++ + .|++.+|+++.+|.||++++.
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~-v-~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDE-V-QVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSS-E-EEEETTCCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCE-E-EEEECCCcEEEcCEEEECCCH
Confidence            47899999999999865443 3 578889989999999999864

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.15  E-value=0.00039  Score=60.01  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=32.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ..|+|||+|+.|+.+|..|++.|.+|+|+++++.+
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            35999999999999999999999999999987654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.13  E-value=0.0021  Score=62.48  Aligned_cols=98  Identities=23%  Similarity=0.350  Sum_probs=64.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc--------cc---------------------------cccc-----
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--------LL---------------------------QRLF-----  111 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~--------~~---------------------------~~~~-----  111 (352)
                      -.++|||+|+.|+.+|..++++|.+|.+|++...        +-                           ...+     
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~~  122 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKFD  122 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcccC
Confidence            3699999999999999999999999999985321        00                           0000     


Q ss_pred             ----C-H-----------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcC----CCCEEEcCEEEEccCCCC
Q 018652          112 ----T-P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       112 ----~-~-----------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~----~g~~i~~D~vi~a~G~~p  171 (352)
                          + +           .+...+...+++.||+++.+.  .++..  ...+ .|...    +++++.+|.+|+|||.+|
T Consensus       123 ~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~--a~f~~--~~~v-~V~~~~~~~~~~~i~a~~iiIATGs~P  197 (542)
T 4b1b_A          123 NLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGL--AKLKD--KNTV-SYYLKGDLSKEETVTGKYILIATGCRP  197 (542)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEE--EEEEE--TTEE-EEEEC--CCCEEEEEEEEEEECCCEEE
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee--EEEcC--CCcc-eEeecccCCceEEEeeeeEEeccCCCC
Confidence                0 0           111223445678899998664  34432  1222 33222    335799999999999998


Q ss_pred             Cch
Q 018652          172 TVS  174 (352)
Q Consensus       172 ~~~  174 (352)
                      ..+
T Consensus       198 ~~P  200 (542)
T 4b1b_A          198 HIP  200 (542)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            644

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.00  E-value=0.0045  Score=61.55  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=29.7

Q ss_pred             CeEEEECCChHHHHHHHHHH---h-CCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAV---G-WKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~---~-~g~~Vtvv~~~~  104 (352)
                      -.|+|||+|..|+-+|..++   + .|.+|+|+++..
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            47999999999999999999   6 899999998764

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.95  E-value=0.0052  Score=60.51  Aligned_cols=75  Identities=19%  Similarity=0.121  Sum_probs=52.1

Q ss_pred             cCCceEEEECCCc---EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            3 YQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         3 ~~~~V~~id~~~~---~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      ++++|++|..++.   .|.+.+|..+.+|.||+|||+.+.. +..+|     .....              +.+    .|
T Consensus       142 ~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~-~~~~G-----~~~~~--------------~Gr----~G  197 (637)
T 2zxi_A          142 KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG-VIYIG-----DKMIP--------------GGR----LG  197 (637)
T ss_dssp             EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC-EEEET-----TEEEE--------------CSB----TT
T ss_pred             EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC-ceecc-----ceecC--------------CCC----CC
Confidence            4678999876544   3678889889999999999998653 32222     22211              222    24


Q ss_pred             ChHHHHHHHHHHhCCCcEEEEe
Q 018652           80 GYIGMEVAAAAVGWKLDTTIIF  101 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv~  101 (352)
                      +..++++|..|.+.|.+++.+.
T Consensus       198 ~~~A~~la~~L~~lG~~v~~l~  219 (637)
T 2zxi_A          198 EPRSEGLSDFYRRFDFPLIRFK  219 (637)
T ss_dssp             BCCBCTHHHHHHHTTCCCEEEE
T ss_pred             chhHHHHHHHHHhcCCceEEec
Confidence            5678999999999998876654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.87  E-value=0.0011  Score=63.00  Aligned_cols=82  Identities=21%  Similarity=0.107  Sum_probs=60.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .++++.|+|.|.+|+.+|..|.++|.+|++.+..+..    .+     ...+.|++.||+++.+....++          
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~----~~-----~~~~~L~~~gi~~~~g~~~~~~----------   68 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFD----EN-----PTAQSLLEEGIKVVCGSHPLEL----------   68 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGG----GC-----HHHHHHHHTTCEEEESCCCGGG----------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCccc----CC-----hHHHHHHhCCCEEEECCChHHh----------
Confidence            5789999999999999999999999999999876521    11     1234678889999876531000          


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                        +. +   .+|.||+++|..|+.+.+
T Consensus        69 --~~-~---~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           69 --LD-E---DFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             --GG-S---CEEEEEECTTSCTTSHHH
T ss_pred             --hc-C---CCCEEEECCcCCCCChhH
Confidence              00 0   179999999998877654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.79  E-value=0.0064  Score=58.56  Aligned_cols=61  Identities=16%  Similarity=0.186  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC------cEEEEEcCCC-----CEEEcCEEEEccCCCCCch
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG------RVAAVKLEDG-----STIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~------~~~~v~~~~g-----~~i~~D~vi~a~G~~p~~~  174 (352)
                      ++.++++...++.+..+.++++|++++..+.+      ....|++.++     +++.|+.||+|+|..|+.+
T Consensus       146 E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          146 EFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             HHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred             HHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence            55666776666677778899999999764322      1345555443     3588999999999888754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.74  E-value=0.0043  Score=61.81  Aligned_cols=32  Identities=25%  Similarity=0.416  Sum_probs=29.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhC------CCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtvv~~~  103 (352)
                      -.|+|||+|..|+-+|..|++.      |.+|+|+++.
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            4699999999999999999997      9999999874

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.69  E-value=0.0026  Score=57.76  Aligned_cols=81  Identities=23%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             CCCeEEEECCChHHHH-HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652           70 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  148 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~  148 (352)
                      ..+++.|||.|-+|+. +|..|.++|.+|++.+..+.      ++     ..+.|++.|++++.+.....          
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~------~~-----~~~~L~~~gi~v~~g~~~~~----------   61 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY------PP-----MSTQLEALGIDVYEGFDAAQ----------   61 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC------TT-----HHHHHHHTTCEEEESCCGGG----------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC------cH-----HHHHHHhCCCEEECCCCHHH----------
Confidence            3578999999999996 88999999999999987642      11     23457788999886532100          


Q ss_pred             EEEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          149 AVKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       149 ~v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                         +..   ..+|.||+++|..|+.+.++
T Consensus        62 ---l~~---~~~d~vV~Spgi~~~~p~~~   84 (326)
T 3eag_A           62 ---LDE---FKADVYVIGNVAKRGMDVVE   84 (326)
T ss_dssp             ---GGS---CCCSEEEECTTCCTTCHHHH
T ss_pred             ---cCC---CCCCEEEECCCcCCCCHHHH
Confidence               000   24899999999998776543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.44  E-value=0.0065  Score=51.76  Aligned_cols=107  Identities=15%  Similarity=0.223  Sum_probs=68.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+++|+|||||.+|...+..|.+.|.+|+++.+.       ..++    +.++.++.+++++...    +.         
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~----l~~l~~~~~i~~i~~~----~~---------   85 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAE----INEWEAKGQLRVKRKK----VG---------   85 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHH----HHHHHHTTSCEEECSC----CC---------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHH----HHHHHHcCCcEEEECC----CC---------
Confidence            6899999999999999999999999999999764       2233    3444455567776431    11         


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCC----CCCC-CCCCEEEecccc
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG----QFRT-RMPGIFAIGDVA  208 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~----~~~t-~~~~Iya~GD~a  208 (352)
                          .+..-.+|+||.|||.......+....   . .++.||-    .+.+ ..|.++--||..
T Consensus        86 ----~~dL~~adLVIaAT~d~~~N~~I~~~a---k-~gi~VNvvD~p~~~~f~~Paiv~rg~l~  141 (223)
T 3dfz_A           86 ----EEDLLNVFFIVVATNDQAVNKFVKQHI---K-NDQLVNMASSFSDGNIQIPAQFSRGRLS  141 (223)
T ss_dssp             ----GGGSSSCSEEEECCCCTHHHHHHHHHS---C-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred             ----HhHhCCCCEEEECCCCHHHHHHHHHHH---h-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence                111124899999999765433332221   1 3455442    2222 457777777764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=95.82  E-value=0.0075  Score=59.54  Aligned_cols=76  Identities=13%  Similarity=0.208  Sum_probs=49.5

Q ss_pred             cCCceEEEECCCc---EEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            3 YQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         3 ~~~~V~~id~~~~---~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      ++++|+.|..++.   .|.+.+|..+.+|.||+|||+.+.. +..+     |....              .+.+   +| 
T Consensus       143 ~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~-~~i~-----G~~~~--------------~~gr---iG-  198 (651)
T 3ces_A          143 FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDG-KIHI-----GLDNY--------------SGGR---AG-  198 (651)
T ss_dssp             EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCC-EEEC-----C----------------------------
T ss_pred             EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccC-cccc-----CcccC--------------CCCC---cc-
Confidence            4678999976543   4677888889999999999998653 2222     22111              1222   46 


Q ss_pred             ChHHHHHHHHHHhCCCcEEEEec
Q 018652           80 GYIGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      |.+++++|..|.+.|.+|+.+..
T Consensus       199 g~~a~eLA~~L~~lG~~v~~~~t  221 (651)
T 3ces_A          199 DPPSIPLSRRLRELPLRVGRLKT  221 (651)
T ss_dssp             ---CCHHHHHHHTTTCCEEEECC
T ss_pred             chhhhHHHHHHHhcCCeEEEecC
Confidence            78999999999999999988753

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.82  E-value=0.0075  Score=57.80  Aligned_cols=61  Identities=20%  Similarity=0.288  Sum_probs=45.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc-------------C----HHHHHHHHHHHHhCCcEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------------T----PSLAQRYEQLYQQNGVKF  130 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~-------------~----~~~~~~l~~~l~~~gV~~  130 (352)
                      ..++|+|||+|.+|+.+|..|++.|.+|+|+++++++..+..             +    +.....+.+.+++.|+++
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~  109 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL  109 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCc
Confidence            357899999999999999999999999999998876544320             0    011345667777777764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.81  E-value=0.037  Score=49.86  Aligned_cols=86  Identities=13%  Similarity=0.142  Sum_probs=55.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEc-CCeEEEEEecCCCcEEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK-GASIKNLEAGSDGRVAAV  150 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~-~~~v~~i~~~~~~~~~~v  150 (352)
                      .++.|||+|.+|.-+|..|++.|.+|+++.|++  .             +.+++.|+.+.. ...-..+.+-      .+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~-------------~~i~~~Gl~~~~~~~g~~~~~~~------~~   61 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--Y-------------ETVKAKGIRIRSATLGDYTFRPA------AV   61 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--H-------------HHHHHHCEEEEETTTCCEEECCS------CE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--H-------------HHHHhCCcEEeecCCCcEEEeee------ee
Confidence            579999999999999999999999999998753  0             334566776643 1000011000      11


Q ss_pred             EcCCC-CEE-EcCEEEEccCCCCCchhhhhc
Q 018652          151 KLEDG-STI-DADTIVIGIGAKPTVSPFERV  179 (352)
Q Consensus       151 ~~~~g-~~i-~~D~vi~a~G~~p~~~~~~~~  179 (352)
                      . .+- +.. .+|+||+|+......+.++.+
T Consensus        62 ~-~~~~~~~~~~DlVilavK~~~~~~~l~~l   91 (320)
T 3i83_A           62 V-RSAAELETKPDCTLLCIKVVEGADRVGLL   91 (320)
T ss_dssp             E-SCGGGCSSCCSEEEECCCCCTTCCHHHHH
T ss_pred             E-CCHHHcCCCCCEEEEecCCCChHHHHHHH
Confidence            1 221 222 699999999887665555543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.76  E-value=0.02  Score=54.50  Aligned_cols=58  Identities=16%  Similarity=0.315  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      .++.+.+.+.+++.|+++++++.|++|..++++++..|++.+|+++.||.||.+++..
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            4677888889999999999999999998645677888999999999999999999988

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=95.74  E-value=0.0075  Score=56.83  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999765

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=95.74  E-value=0.011  Score=55.37  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=33.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~  106 (352)
                      ...+|+|||+|..|+.+|..|++.| .+|+|+++++++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            4578999999999999999999999 899999987665

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=95.73  E-value=0.0085  Score=56.94  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~  105 (352)
                      ++|+|||||.+|+-+|..|++.|.  +|+|++++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~   38 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSER   38 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCC
Confidence            589999999999999999999999  9999998643

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=95.59  E-value=0.012  Score=54.43  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++|+|||||..|+++|..+++.|.+|+++++++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            479999999999999999999999999999754

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.57  E-value=0.013  Score=56.33  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=57.4

Q ss_pred             cCCCeEEEECCChHHHH-HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcE
Q 018652           69 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  147 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~  147 (352)
                      ...+++.|||-|-+|+. +|..|.++|.+|++.+....       +     ..+.|++.|++++.+...       + . 
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~-------~-~-   78 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------S-----VTQHLTALGAQIYFHHRP-------E-N-   78 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCEEESSCCG-------G-G-
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC-------H-----HHHHHHHCCCEEECCCCH-------H-H-
Confidence            45689999999999996 89999999999999876431       1     224578889999876311       0 0 


Q ss_pred             EEEEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          148 AAVKLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       148 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                          +     ..+|.||+++|..|+.+.+
T Consensus        79 ----~-----~~~d~vV~Spgi~~~~p~~   98 (494)
T 4hv4_A           79 ----V-----LDASVVVVSTAISADNPEI   98 (494)
T ss_dssp             ----G-----TTCSEEEECTTSCTTCHHH
T ss_pred             ----c-----CCCCEEEECCCCCCCCHHH
Confidence                1     1389999999998876543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=95.54  E-value=0.014  Score=53.41  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ...+|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            3468999999999999999999999999999975

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=95.54  E-value=0.013  Score=55.86  Aligned_cols=39  Identities=23%  Similarity=0.232  Sum_probs=34.5

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      ....+|+|||+|..|+-+|..|++.|.+|+|+++.+++-
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G   47 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPG   47 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            346789999999999999999999999999999886543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=95.50  E-value=0.013  Score=56.46  Aligned_cols=36  Identities=31%  Similarity=0.427  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ..+|+|||||..|+.+|..|++.|.+|+|+++++++
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            457999999999999999999999999999987554

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=95.49  E-value=0.014  Score=53.86  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=33.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC-Ccc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~-~~~  106 (352)
                      ...+|+|||+|..|+-+|..|.+.|.+|+|++++ +++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            3578999999999999999999999999999988 543

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=95.43  E-value=0.014  Score=56.21  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=32.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~  106 (352)
                      ..+|+|||+|..|+-+|..|.+.| .+|+|++.++++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            358999999999999999999999 999999987543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=95.41  E-value=0.015  Score=55.28  Aligned_cols=38  Identities=29%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ....+|+|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            34678999999999999999999999999999988654

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=95.40  E-value=0.014  Score=55.32  Aligned_cols=40  Identities=15%  Similarity=0.047  Sum_probs=35.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  109 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~  109 (352)
                      ...+|+|||+|..|+-+|..|++.|.+|+++++++++-.+
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence            3467999999999999999999999999999998766443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.24  E-value=0.053  Score=42.30  Aligned_cols=77  Identities=16%  Similarity=0.238  Sum_probs=51.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  150 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v  150 (352)
                      .++++|+|.|..|..+|..|.+.|.+|+++++++.            .+ +.+++.|+.++.+..      . +..   +
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~------------~~-~~~~~~g~~~i~gd~------~-~~~---~   63 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT------------RV-DELRERGVRAVLGNA------A-NEE---I   63 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH------------HH-HHHHHTTCEEEESCT------T-SHH---H
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH------------HH-HHHHHcCCCEEECCC------C-CHH---H
Confidence            46899999999999999999999999999987642            11 224456777765421      0 000   0


Q ss_pred             EcCCCCEEEcCEEEEccCCCC
Q 018652          151 KLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       151 ~~~~g~~i~~D~vi~a~G~~p  171 (352)
                       +..-..-.+|.+|++++...
T Consensus        64 -l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A           64 -MQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             -HHHTTGGGCSEEEECCSCHH
T ss_pred             -HHhcCcccCCEEEEECCChH
Confidence             00001136899999988654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.22  E-value=0.0068  Score=57.35  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=56.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+++++|||.|.+|+..|..|.++|.+|+..+.......     .      ..++ .|+++..+...   . .      .
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~-----~------~~l~-~G~~~~~g~~~---~-~------~   61 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG-----L------DKLP-EAVERHTGSLN---D-E------W   61 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT-----G------GGSC-TTSCEEESSCC---H-H------H
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch-----h------HHhh-CCCEEEECCCc---H-H------H
Confidence            468999999999999999999999999999987653211     1      2345 68888765411   0 0      0


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPFE  177 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~  177 (352)
                        +    . .+|.||+++|..|+.+.+.
T Consensus        62 --~----~-~~d~vV~s~gi~~~~p~~~   82 (439)
T 2x5o_A           62 --L----M-AADLIVASPGIALAHPSLS   82 (439)
T ss_dssp             --H----H-TCSEEEECTTSCTTCHHHH
T ss_pred             --h----c-cCCEEEeCCCCCCCCHHHH
Confidence              1    1 4789999999987665443

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=95.13  E-value=0.02  Score=54.77  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=33.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ...+|+|||+|..|+-+|..|++.|.+|+|+++.+++
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   48 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   48 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            4578999999999999999999999999999988765

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.09  E-value=0.032  Score=44.36  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=33.4

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ..+++++|+|+|.+|..+|..|.+.|.+|+++++++.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4678999999999999999999999999999988754

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=95.08  E-value=0.021  Score=53.79  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ..+|+|||+|..|+.+|..|++.|.+|+|+++++++
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            357999999999999999999999999999987544

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=95.05  E-value=0.022  Score=52.71  Aligned_cols=35  Identities=26%  Similarity=0.463  Sum_probs=32.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      .+++|||+|.+|+.+|..|++.|.+|+++++++++
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            57999999999999999999999999999987654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=94.93  E-value=0.025  Score=54.07  Aligned_cols=36  Identities=22%  Similarity=0.449  Sum_probs=32.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   74 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRI   74 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            468999999999999999999999999999988654

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=94.87  E-value=0.028  Score=52.34  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=32.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ..+++|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            458999999999999999999999999999987654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.84  E-value=0.045  Score=49.07  Aligned_cols=85  Identities=16%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  151 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~  151 (352)
                      .++.|||+|.+|.-+|..|++.|.+|+++.|++              . +.+++.|+.+.....-..+.+-      .+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--------------~-~~i~~~g~~~~~~~g~~~~~~~------~~~   61 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--------------Y-EAIAGNGLKVFSINGDFTLPHV------KGY   61 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--------------H-HHHHHTCEEEEETTCCEEESCC------CEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--------------H-HHHHhCCCEEEcCCCeEEEeec------eee
Confidence            479999999999999999999999999997742              0 3356678776532100111000      111


Q ss_pred             cCCCC-EEEcCEEEEccCCCCCchhhhh
Q 018652          152 LEDGS-TIDADTIVIGIGAKPTVSPFER  178 (352)
Q Consensus       152 ~~~g~-~i~~D~vi~a~G~~p~~~~~~~  178 (352)
                       .+-+ .-++|.||+|+......+.++.
T Consensus        62 -~~~~~~~~~D~vilavk~~~~~~~l~~   88 (312)
T 3hn2_A           62 -RAPEEIGPMDLVLVGLKTFANSRYEEL   88 (312)
T ss_dssp             -SCHHHHCCCSEEEECCCGGGGGGHHHH
T ss_pred             -cCHHHcCCCCEEEEecCCCCcHHHHHH
Confidence             1111 1268999999877654444443

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=94.83  E-value=0.018  Score=52.38  Aligned_cols=32  Identities=31%  Similarity=0.433  Sum_probs=29.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCC------CcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g------~~Vtvv~~~~  104 (352)
                      +|+|||||.+|+-+|..|++.|      .+|+|+++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6999999999999999999998      8999999773

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=94.81  E-value=0.041  Score=53.19  Aligned_cols=80  Identities=20%  Similarity=0.136  Sum_probs=57.6

Q ss_pred             cCCCeEEEECCChHHHH-HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcE
Q 018652           69 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  147 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~  147 (352)
                      ...+++.+||-|-+|+. +|..|.++|.+|++.+....      ++     ..+.|++.||+++.+.....         
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~---------   76 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAH---------   76 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGG---------
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHH---------
Confidence            46789999999999997 68889999999999887542      11     23567788999886631100         


Q ss_pred             EEEEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          148 AAVKLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       148 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                          +    ...+|.||+++|..|+.+.+
T Consensus        77 ----~----~~~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           77 ----L----QPAPDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             ----G----CSCCSEEEECTTCCTTSHHH
T ss_pred             ----c----CCCCCEEEECCCcCCCCHHH
Confidence                0    02489999999998876654

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=94.80  E-value=0.027  Score=55.45  Aligned_cols=51  Identities=20%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccC--Cc-cCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFP--LK-MYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~--~~-~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|||.||.++||++||+||+|+|+...  .. .++..    ....+.-.|+.|++++.
T Consensus       359 ~GGi~vd~~~~~~IpGLyAaGe~a~~g~hGanrl~gn----sl~~~~vfGr~Ag~~aa  412 (602)
T 1kf6_A          359 MGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSN----SLAELVVFGRLAGEQAT  412 (602)
T ss_dssp             CCEEECCTTSBCSSBTEEECGGGEECSSSTTSCCTTH----HHHHHHHHHHHHHHHHH
T ss_pred             CCeEEECCCCccccCCEEEccccccccccCCCCCccH----HHHHHHHHHHHHHHHHH
Confidence            489999999999999999999997421  11 11111    23345555666666654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=94.70  E-value=0.027  Score=52.38  Aligned_cols=36  Identities=19%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~  106 (352)
                      ..+++|||+|..|+-+|..|++. |.+|+|+++++++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            46899999999999999999998 9999999987654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=94.66  E-value=0.03  Score=51.53  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      +++|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            6899999999999999999999999999987543

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.49  E-value=0.056  Score=51.27  Aligned_cols=79  Identities=11%  Similarity=0.134  Sum_probs=54.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      .+++|+|||+|.+|...+..|.+.|.+|+++.+..       .++    +.+..++.+++++.+.    +.         
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~-------~~~----~~~l~~~~~i~~~~~~----~~---------   66 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF-------IPQ----FTVWANEGMLTLVEGP----FD---------   66 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC-------CHH----HHHHHTTTSCEEEESS----CC---------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC-------CHH----HHHHHhcCCEEEEECC----CC---------
Confidence            57899999999999999999999999999998642       222    2333334567766432    11         


Q ss_pred             EEcCCCCEEEcCEEEEccCCCC-Cchhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKP-TVSPF  176 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p-~~~~~  176 (352)
                          .+..-.+|+||.+||... |....
T Consensus        67 ----~~~l~~~~lVi~at~~~~~n~~i~   90 (457)
T 1pjq_A           67 ----ETLLDSCWLAIAATDDDTVNQRVS   90 (457)
T ss_dssp             ----GGGGTTCSEEEECCSCHHHHHHHH
T ss_pred             ----ccccCCccEEEEcCCCHHHHHHHH
Confidence                111125899999999873 54443

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=94.48  E-value=0.027  Score=53.42  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=31.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~  105 (352)
                      ..+|+|||+|.+|+-+|..|++.|  .+|+|++++++
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER   40 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            358999999999999999999999  99999998643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.43  E-value=0.053  Score=42.90  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=30.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            568999999999999999999999999999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.43  E-value=0.1  Score=46.86  Aligned_cols=88  Identities=17%  Similarity=0.231  Sum_probs=51.8

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  148 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~  148 (352)
                      ....++.|||+|.+|.-+|..|++.|.+|+++ +++.         .    .+.+++.|+.+.... . ....    .+ 
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~---------~----~~~i~~~g~~~~~~~-~-~~~~----~~-   75 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQ---------H----VQAIEATGLRLETQS-F-DEQV----KV-   75 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHH---------H----HHHHHHHCEEEECSS-C-EEEE----CC-
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHh---------H----HHHHHhCCeEEEcCC-C-cEEE----ee-
Confidence            35678999999999999999999999999998 5431         1    133455576665321 1 1110    00 


Q ss_pred             EEEcCCCCE-EEcCEEEEccCCCCCchhhhh
Q 018652          149 AVKLEDGST-IDADTIVIGIGAKPTVSPFER  178 (352)
Q Consensus       149 ~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~  178 (352)
                      ... .+-+. -.+|+||+|+......+.++.
T Consensus        76 ~~~-~~~~~~~~~D~vilavk~~~~~~~l~~  105 (318)
T 3hwr_A           76 SAS-SDPSAVQGADLVLFCVKSTDTQSAALA  105 (318)
T ss_dssp             EEE-SCGGGGTTCSEEEECCCGGGHHHHHHH
T ss_pred             eee-CCHHHcCCCCEEEEEcccccHHHHHHH
Confidence            111 12111 258999999876543333433

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=94.24  E-value=0.048  Score=54.33  Aligned_cols=37  Identities=24%  Similarity=0.520  Sum_probs=33.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ..++|+|||+|..|+.+|..|.+.|.+|+++++.+++
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3578999999999999999999999999999987543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=94.15  E-value=0.049  Score=55.76  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=32.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      .++|+|||+|..|+.+|..|.+.|.+|+|+++.++
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~  312 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR  312 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence            56899999999999999999999999999997643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.15  E-value=0.066  Score=41.61  Aligned_cols=34  Identities=9%  Similarity=0.089  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++|+|+|.+|..+|..|.+.|.+|+++++++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            5689999999999999999999999999998753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.07  E-value=0.066  Score=41.21  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      +.+++|+|+|.+|..+|..|.+.|.+|++++++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            357999999999999999999999999999764

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=94.06  E-value=0.058  Score=51.56  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=33.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCCcc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~  106 (352)
                      ...+++|||+|..|+-+|..|++.| .+|+|+++++++
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            3568999999999999999999998 799999988654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.77  E-value=0.13  Score=45.91  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=48.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  151 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~  151 (352)
                      .++.|||+|.+|.-+|..|. .|.+|+++.|++.             -.+.+++.|+.+..... ....        .+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~-------------~~~~l~~~G~~~~~~~~-~~~~--------~~~   59 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQE-------------QAAAIQSEGIRLYKGGE-EFRA--------DCS   59 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH-------------HHHHHHHHCEEEEETTE-EEEE--------CCE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHH-------------HHHHHHhCCceEecCCC-eecc--------ccc
Confidence            47999999999999999999 9999999987531             11334556877763221 1111        111


Q ss_pred             cCCCCEEEcCEEEEccCCC
Q 018652          152 LEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       152 ~~~g~~i~~D~vi~a~G~~  170 (352)
                      ......-++|+||+|+-..
T Consensus        60 ~~~~~~~~~D~vilavK~~   78 (307)
T 3ego_A           60 ADTSINSDFDLLVVTVKQH   78 (307)
T ss_dssp             EESSCCSCCSEEEECCCGG
T ss_pred             ccccccCCCCEEEEEeCHH
Confidence            1111123689999997654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=93.73  E-value=0.054  Score=51.59  Aligned_cols=39  Identities=8%  Similarity=0.060  Sum_probs=34.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  108 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~  108 (352)
                      ....|+|||+|..|+-+|..|++.|.+|.++++++.+-.
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGG   57 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            345799999999999999999999999999999876544

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.70  E-value=0.066  Score=39.81  Aligned_cols=34  Identities=26%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~  104 (352)
                      .++++|+|+|.+|..++..|.+.| .+|+++.+++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            468999999999999999999999 8898887753

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=93.55  E-value=0.074  Score=49.99  Aligned_cols=36  Identities=11%  Similarity=0.002  Sum_probs=32.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      ..+++|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~   41 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYY   41 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCc
Confidence            467999999999999999999999999999987654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.55  E-value=0.083  Score=40.80  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999999999999999999998765

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=93.41  E-value=0.077  Score=51.45  Aligned_cols=52  Identities=21%  Similarity=0.270  Sum_probs=35.2

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccC--Cc-cCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFP--LK-MYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~--~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|||.+|.+.||++||+||+|+|+...  +. .++..    ....|.-.|+.|++++..
T Consensus       354 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gn----sl~~~~vfG~~Ag~~aa~  408 (540)
T 1chu_A          354 CGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASN----SLLECLVYGWSAAEDITR  408 (540)
T ss_dssp             SCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTH----HHHHHHHHHHHHHHHHHH
T ss_pred             cCcEEECCCCCCccCCEEeccccccccccCCCcCcch----hHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999998421  11 11211    233455667777776653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.31  E-value=0.057  Score=47.39  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=31.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++|+|||||.+|...+..|.+.|.+|+|+.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            5799999999999999999999999999999864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=93.21  E-value=0.19  Score=47.83  Aligned_cols=55  Identities=24%  Similarity=0.368  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhCC-cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          114 SLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       114 ~~~~~l~~~l~~~g-V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      .+.+.+.+.+.+.| +++++++.|++|+..++ . ..|.+.+|+++.+|.||+++|..
T Consensus       256 ~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~-~-v~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          256 AFARRFWEEAAGTGRLGYVFGCPVRSVVNERD-A-ARVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHTTTCEEEESSCCEEEEEECSS-S-EEEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHhhhcCceEEEeCCEEEEEEEcCC-E-EEEEECCCCEEEcCEEEECCCHH
Confidence            45666777788888 99999999999986543 3 35778888889999999999963

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=93.01  E-value=0.096  Score=52.09  Aligned_cols=25  Identities=32%  Similarity=0.696  Sum_probs=23.0

Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAA  209 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~  209 (352)
                      -|||.||.+.+|++||+||+|+|+.
T Consensus       372 ~GGi~vd~~~~v~IpGLYAaGE~a~  396 (660)
T 2bs2_A          372 MGGIRTDYRGEAKLKGLFSAGEAAC  396 (660)
T ss_dssp             CCEEECCTTSBCSSBTEEECGGGEE
T ss_pred             cceEEECCCCceecCCEEecccccc
Confidence            4899999999999999999999864

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=92.98  E-value=0.1  Score=46.89  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      ..++|.|||+|..|..+|..++..|.+|++++..+..+
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l   42 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQI   42 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            35789999999999999999999999999999876544

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=92.96  E-value=0.11  Score=49.37  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~  105 (352)
                      ..+|+|||+|..|+-+|..|.+.|. +|++++++++
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~   39 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   39 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence            4679999999999999999999998 8999997643

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=92.73  E-value=0.14  Score=45.98  Aligned_cols=34  Identities=12%  Similarity=0.049  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~  104 (352)
                      ..+|.|||.|..|..+|..|++.| .+|+++.+.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            468999999999999999999999 9999998875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.59  E-value=0.12  Score=42.10  Aligned_cols=34  Identities=18%  Similarity=0.084  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhC-CCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~  104 (352)
                      +.+++|+|.|.+|..+|..|.+. |.+|+++++++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            56899999999999999999999 99999998754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=92.40  E-value=0.42  Score=44.78  Aligned_cols=62  Identities=23%  Similarity=0.365  Sum_probs=43.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------cccCHHHHHHHHHHHHhCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------RLFTPSLAQRYEQLYQQNGVKFV  131 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------~~~~~~~~~~l~~~l~~~gV~~~  131 (352)
                      .+.+..|||.|+.|+-+|..|++.|.+|+++++++....       ....+.+.+.+.+.+....+.+-
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t   78 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS   78 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEe
Confidence            578899999999999999999999999999988753211       12344555555555555545554

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=91.98  E-value=0.11  Score=46.42  Aligned_cols=33  Identities=18%  Similarity=0.058  Sum_probs=29.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~  103 (352)
                      ..+|.|||.|..|..+|..|.+.|. +|+++.+.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4689999999999999999999999 99998875

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=91.93  E-value=0.28  Score=46.31  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecC-CCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~-~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ..+.+.+.+.+++.|.++++++.|++|.... ++++..|.+ +|+++.||.||+++|..|.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            3677788888899999999999999998642 456556766 5788999999999998754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=91.87  E-value=0.51  Score=46.55  Aligned_cols=60  Identities=17%  Similarity=0.131  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC-CcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ..+.+.+.+.++..|.++++++.|.+|...++ +++..|.+.+|+++.||.||......|.
T Consensus       378 g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~  438 (650)
T 1vg0_A          378 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  438 (650)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             hHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence            46788888999999999999999999975433 7777888888999999999997776664

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.70  E-value=0.19  Score=44.30  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      -++|.|||+|.+|..+|..|++.|.+|+++++++..+
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~   40 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDAL   40 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence            4789999999999999999999999999998876433

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=91.28  E-value=0.071  Score=52.57  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=50.2

Q ss_pred             cCCceEEEECCCcE---EEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECC
Q 018652            3 YQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGG   79 (352)
Q Consensus         3 ~~~~V~~id~~~~~---V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGg   79 (352)
                      ++++|+.+..++..   |.+.+|..+.+|.||+|||+.+.... .+|     ....              .+.+++   |
T Consensus       136 ~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i-~~G-----~~~~--------------~~g~~v---G  192 (641)
T 3cp8_A          136 LQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLI-HIG-----MDHF--------------PGGRST---A  192 (641)
T ss_dssp             EECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTCEE-EET-----TEEE--------------ECSSST---T
T ss_pred             EeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCccc-eee-----eeee--------------cccccc---C
Confidence            45678888765543   66788889999999999999865321 111     1111              011221   4


Q ss_pred             ChHHHHHHHHHHhCCCcEEEE
Q 018652           80 GYIGMEVAAAAVGWKLDTTII  100 (352)
Q Consensus        80 G~~g~e~A~~l~~~g~~Vtvv  100 (352)
                      +..++++|..|.+.|.++..+
T Consensus       193 ~~~a~~la~~L~~~G~kv~~l  213 (641)
T 3cp8_A          193 EPPVEGLTESLASLGFSFGRL  213 (641)
T ss_dssp             SCCBCSHHHHHHHTTCCEEEE
T ss_pred             CchhhhhHHHHHhCCceEEee
Confidence            678889999999999988755

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=91.23  E-value=0.16  Score=50.57  Aligned_cols=19  Identities=16%  Similarity=0.141  Sum_probs=16.8

Q ss_pred             CCCCCCCCCEEEecccccc
Q 018652          192 GQFRTRMPGIFAIGDVAAF  210 (352)
Q Consensus       192 ~~~~t~~~~Iya~GD~a~~  210 (352)
                      ..++|++|++||+|||+..
T Consensus       446 ~~~~t~v~gl~a~Ge~~~~  464 (662)
T 3gyx_A          446 YNRMTTVEGLWTCADGVGA  464 (662)
T ss_dssp             CTTBCSSBTEECCSSSBCS
T ss_pred             cCCCCccCCeEeCcccccc
Confidence            6788999999999999853

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=91.22  E-value=0.097  Score=52.35  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=33.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC--------CcEEEEecCC-cccc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK--------LDTTIIFPEN-HLLQ  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g--------~~Vtvv~~~~-~~~~  108 (352)
                      ++|+|||+|..|+.+|..|.+.|        .+|+|+++++ ++..
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~  102 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLH  102 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccccc
Confidence            58999999999999999999988        8999999988 7743

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=90.90  E-value=0.13  Score=49.86  Aligned_cols=39  Identities=18%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             CccCCceEEEECCCc---EEEeCCCeEEecCeEEEccCCCCC
Q 018652            1 MIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS   39 (352)
Q Consensus         1 ~~~~~~V~~id~~~~---~V~~~~g~~~~yd~lViAtG~~~~   39 (352)
                      ++++++|++|..++.   .|++++|+++.+|.||+|+|..++
T Consensus       237 I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          237 IRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             EESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             EEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            367889999987654   477889989999999999999873

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=90.71  E-value=0.21  Score=46.92  Aligned_cols=58  Identities=17%  Similarity=0.350  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       113 ~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      ..+.+.+.+.+++.|+++++++.|++|... ++.+..+. .+|+++.||.||+++|..+.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~-~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKVVGVK-SEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEE-TTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEe-CCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence            367778888888899999999999999854 45555555 47788999999999998764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=90.70  E-value=0.19  Score=42.58  Aligned_cols=37  Identities=27%  Similarity=0.311  Sum_probs=28.7

Q ss_pred             CCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          193 QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       193 ~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      .++++.++||++||++..+           .+..|+..|+.+|+.|+.
T Consensus       289 ~~~~~~~~v~l~GDa~~g~-----------gv~~A~~sG~~aA~~I~~  325 (336)
T 3kkj_A          289 ALSDADLGIYVCGDWCLSG-----------RVEGAWLSGQEAARRLLE  325 (336)
T ss_dssp             SEEETTTTEEECCGGGTTS-----------SHHHHHHHHHHHHHHHHH
T ss_pred             ceeeCCCCEEEEecccCCc-----------CHHHHHHHHHHHHHHHHH
Confidence            4456789999999987532           456689999999998875

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=90.67  E-value=0.14  Score=41.34  Aligned_cols=36  Identities=17%  Similarity=0.061  Sum_probs=28.5

Q ss_pred             ccCCceEEEECCC--cEEEeCCCeEEecCeEEEccCCCCC
Q 018652            2 IYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS   39 (352)
Q Consensus         2 ~~~~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~~~   39 (352)
                      +++ +|++++.++  ..|++++| ++.+|.||+|+|..|.
T Consensus        74 ~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           74 RPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT  111 (180)
T ss_dssp             EEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH
T ss_pred             EeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC
Confidence            345 788887644  46778888 7999999999999873

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=90.51  E-value=0.26  Score=47.75  Aligned_cols=56  Identities=18%  Similarity=0.310  Sum_probs=42.4

Q ss_pred             CCcEEEcCCeEEEEEecCCCcEEEEEcCC---CC--EE---EcCEEEEccCCCCCchhhhhcCCc
Q 018652          126 NGVKFVKGASIKNLEAGSDGRVAAVKLED---GS--TI---DADTIVIGIGAKPTVSPFERVGLN  182 (352)
Q Consensus       126 ~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g~--~i---~~D~vi~a~G~~p~~~~~~~~gl~  182 (352)
                      .|+++++++.|++|..+ ++++..|++.+   |+  ++   .++.||+|+|.-....++..+|+.
T Consensus       209 ~~~~i~~~~~V~~i~~~-~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig  272 (546)
T 1kdg_A          209 PNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG  272 (546)
T ss_dssp             TTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred             CCcEEEeCCEEEEEEEe-CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence            48999999999999854 45777887765   54  34   789999999986555677666664

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.41  E-value=0.24  Score=41.58  Aligned_cols=76  Identities=20%  Similarity=0.282  Sum_probs=49.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL  152 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~  152 (352)
                      +++|+|+|..|..+|..|.+.|.+|+++++++.            .+.+..++.|+.++.+...       +..    .+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~------------~~~~l~~~~~~~~i~gd~~-------~~~----~l   58 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE------------LCEEFAKKLKATIIHGDGS-------HKE----IL   58 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH------------HHHHHHHHSSSEEEESCTT-------SHH----HH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH------------HHHHHHHHcCCeEEEcCCC-------CHH----HH
Confidence            689999999999999999999999999986542            1222223456766544210       000    00


Q ss_pred             CCCCEEEcCEEEEccCCCC
Q 018652          153 EDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       153 ~~g~~i~~D~vi~a~G~~p  171 (352)
                      ..-..-.+|.+|++++...
T Consensus        59 ~~a~i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C           59 RDAEVSKNDVVVILTPRDE   77 (218)
T ss_dssp             HHHTCCTTCEEEECCSCHH
T ss_pred             HhcCcccCCEEEEecCCcH
Confidence            0001236899999998654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.31  E-value=0.34  Score=40.95  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=31.5

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|.|+ |.+|..++..|.+.|.+|+++.|.+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            5789999996 9999999999999999999998865

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.21  E-value=0.15  Score=39.76  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|+|+|.+|..++..|.+.|.+|+++.+.+
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            48999999999999999999999998888877653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=90.14  E-value=0.5  Score=44.52  Aligned_cols=55  Identities=27%  Similarity=0.419  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      .+.+.+.+.+++.|+++++++.|++|+..+++ ...|.+ ++.++.+|.||++++..
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~v~~-~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEG-RWKVSL-RDSSLEADHVISAIPAS  289 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGG-CEEEEC-SSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCc-eEEEEE-CCeEEEcCEEEECCCHH
Confidence            56778888889999999999999999865433 235655 55579999999998753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=89.82  E-value=0.4  Score=40.05  Aligned_cols=35  Identities=11%  Similarity=0.159  Sum_probs=30.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ...++.|||.|.+|..+|..|.+.|.+|+++.+++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            46789999999999999999999999999998764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=89.72  E-value=0.36  Score=44.14  Aligned_cols=36  Identities=17%  Similarity=0.220  Sum_probs=31.7

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCC
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA   38 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~   38 (352)
                      +++++|++++.+. .|++++|+++.+|.||.|+|..+
T Consensus       125 ~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          125 SVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGS  160 (379)
T ss_dssp             ESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTC
T ss_pred             EeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccH
Confidence            5688999998866 88898998999999999999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=89.61  E-value=0.36  Score=42.77  Aligned_cols=35  Identities=26%  Similarity=0.434  Sum_probs=31.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      -++|.|||+|..|..+|..|++.|.+|+++++++.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46899999999999999999999999999988754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=89.58  E-value=0.45  Score=41.45  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++|+|.|+|++|..++..|.+.|.+|+.+.|..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999998865

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=89.55  E-value=0.7  Score=40.33  Aligned_cols=34  Identities=12%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      +++++|+|+|-.|..++..|.+.|.+|+++.|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            7899999999999999999999999999998764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=89.55  E-value=1  Score=42.76  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=34.1

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhC-CC-cEEEEecCCc
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGW-KL-DTTIIFPENH  105 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~-g~-~Vtvv~~~~~  105 (352)
                      ...-.+|.|||.|..|.-+|..|++. |. +|+++++.+.
T Consensus        15 ~~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           15 RGPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             HCSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            34567899999999999999999999 99 9999998765

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=89.35  E-value=0.4  Score=43.62  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      |+|+|+|||..|.+++..++++|.+|.++++.+
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~   34 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP   34 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            689999999999999999999999999998653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.30  E-value=0.54  Score=43.82  Aligned_cols=76  Identities=13%  Similarity=0.231  Sum_probs=50.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  150 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v  150 (352)
                      ..+|+|+|.|..|..+|..|.+.|.+|+++++++..            + +.+++.|++++.+.. +      +..  .+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~------------v-~~~~~~g~~vi~GDa-t------~~~--~L   61 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDH------------I-ETLRKFGMKVFYGDA-T------RMD--LL   61 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHH------------H-HHHHHTTCCCEESCT-T------CHH--HH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH------------H-HHHHhCCCeEEEcCC-C------CHH--HH
Confidence            467999999999999999999999999999876421            1 224566777765521 0      000  00


Q ss_pred             EcCCCCEEEcCEEEEccCCC
Q 018652          151 KLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       151 ~~~~g~~i~~D~vi~a~G~~  170 (352)
                      . .-| .-.+|.||++++..
T Consensus        62 ~-~ag-i~~A~~viv~~~~~   79 (413)
T 3l9w_A           62 E-SAG-AAKAEVLINAIDDP   79 (413)
T ss_dssp             H-HTT-TTTCSEEEECCSSH
T ss_pred             H-hcC-CCccCEEEECCCCh
Confidence            0 011 12588889888753

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=89.26  E-value=0.32  Score=46.62  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=30.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHh-CCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~-~g~~Vtvv~~~~  104 (352)
                      .-.++|||+|..|+-+|..|++ .+.+|.|+++++
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~   51 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE   51 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence            4579999999999999999998 678999999874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=89.06  E-value=0.53  Score=44.17  Aligned_cols=61  Identities=15%  Similarity=0.242  Sum_probs=45.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc-------ccccCHHHHHHHHHHHHhCCcEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QRLFTPSLAQRYEQLYQQNGVKFV  131 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-------~~~~~~~~~~~l~~~l~~~gV~~~  131 (352)
                      -.++.|||-|++|+-+|..|++.|.+|+.++.++.-.       .....|.+.+.+.+.+++..+.+-
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~t   88 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFA   88 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEE
Confidence            3589999999999999999999999999998664211       113456677777777766655553

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=89.05  E-value=0.43  Score=41.93  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=29.9

Q ss_pred             eEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           73 KVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        73 ~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ||+|.|| |++|-.++..|.+.|++|+.+.|++.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            6899997 99999999999999999999988653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=89.03  E-value=1.1  Score=42.08  Aligned_cols=62  Identities=13%  Similarity=0.351  Sum_probs=44.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc-------cccCHHHHHHHHHHHHhCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------RLFTPSLAQRYEQLYQQNGVKFV  131 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-------~~~~~~~~~~l~~~l~~~gV~~~  131 (352)
                      ..-++.|||.|+.|.-+|..|++.|.+|+++.+++....       ..+.+.+.+.+.+.+...++++.
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t   75 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT   75 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE
Confidence            356899999999999999999999999999998764321       12334555555554444455554

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=89.02  E-value=0.43  Score=41.65  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=30.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ++.|||+|.+|.-+|..|.+.|.+|+++.|++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            689999999999999999999999999988764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=88.97  E-value=0.22  Score=48.49  Aligned_cols=53  Identities=13%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             CCcEEeCCCCC------CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          185 VGGIQVDGQFR------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       185 ~g~i~vd~~~~------t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      -|||.||+++|      +.+||+||+|.++.....  ..+..-.....|.-.|++|++++.
T Consensus       502 ~GGl~vd~~~~vl~~~g~~I~GLyAaGe~~~g~~g--~~~~~g~sl~~~~v~Gr~Ag~~aa  560 (566)
T 1qo8_A          502 MGGVAINTTASVLDLQSKPIDGLFAAGEVTGGVHG--YNRLGGNAIADTVVFGRIAGDNAA  560 (566)
T ss_dssp             CCEECBCTTCEEEBTTSCEEEEEEECSTTBCSSST--TCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccEEECCCCeEECCCCCEeCCEEecccccCCCCC--CCCCchhhHHHHHHHHHHHHHHHH
Confidence            48899999887      678999999999853211  011111133346666777777765

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=88.72  E-value=0.52  Score=43.66  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+.+|+|+|+|.+|..+|..+...|.+|+++++.+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45799999999999999999999999999988765

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=88.70  E-value=0.38  Score=44.17  Aligned_cols=35  Identities=26%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+.+|+|+|+|.+|..+|..+...|.+|+++++++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46799999999999999999999999999988765

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=88.61  E-value=0.39  Score=41.43  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      ..++|+|+|.|-+|.++|..|++.|. +++++++..
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            35789999999999999999999996 899988764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=88.37  E-value=0.45  Score=41.38  Aligned_cols=34  Identities=12%  Similarity=0.055  Sum_probs=31.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++|+|.|+|++|..++..|.+.|.+|+.+.|++
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            3689999999999999999999999999998864

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=88.20  E-value=0.71  Score=45.52  Aligned_cols=54  Identities=15%  Similarity=0.029  Sum_probs=42.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  126 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~  126 (352)
                      -.++|+|+|..++-+|..|++.|.+|.++++++++........+. .+.+++++.
T Consensus         9 ~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~-~l~~w~~~~   62 (650)
T 1vg0_A            9 FDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFS-GLLSWLKEY   62 (650)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHH-HHHHHHHHT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHH-HHHHHHHHh
Confidence            479999999999999999999999999999998876654443332 455555444

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=88.19  E-value=0.59  Score=40.76  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|+|+|-+|..+|..|.+.|.+|+++.|.
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            5789999999999999999999999999998765

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=88.17  E-value=0.88  Score=40.68  Aligned_cols=61  Identities=15%  Similarity=0.183  Sum_probs=41.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  130 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~  130 (352)
                      .++++.|||-|.+|..+|..|...|.+|..+.+.+..............+.+.+++..+-+
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~  198 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLI  198 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEE
Confidence            3679999999999999999999999999999877643221100000134556666554433

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=88.14  E-value=0.28  Score=47.75  Aligned_cols=54  Identities=13%  Similarity=0.228  Sum_probs=35.4

Q ss_pred             CCcEEeCCCCC------CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFR------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~------t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|||.+|+.+|      +.+||+||+|.++.....  ..+..-.....+.-.|++|++++..
T Consensus       507 ~GGl~id~~~~vl~~~g~~I~GLyAaGe~~~g~~g--~~~l~g~sl~~~~~fGr~Ag~~aa~  566 (571)
T 1y0p_A          507 MGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHG--ANRLGGNAISDIITFGRLAGEEAAK  566 (571)
T ss_dssp             CCEEEBCTTCEEECTTSCEEEEEEECSTTEESSST--TSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEECCCceEECCCCCCcCCcEeceEcCCCCcC--CCCCchHhHHHHHHHHHHHHHHHHH
Confidence            48999999988      678999999999863211  0111111333466777888777753

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=88.12  E-value=0.36  Score=46.69  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      -.++|||+|..|+-+|..|++ |.+|.|+++++
T Consensus        27 yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~   58 (536)
T 1ju2_A           27 YDYVIVGGGTSGCPLAATLSE-KYKVLVLERGS   58 (536)
T ss_dssp             EEEEEECCSTTHHHHHHHHTT-TSCEEEECSSB
T ss_pred             ccEEEECccHHHHHHHHHHhc-CCcEEEEecCC
Confidence            469999999999999999999 99999999874

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=88.02  E-value=0.61  Score=38.10  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=30.9

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           72 KKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ++++|.|+ |.+|..++..|.+.|.+|+++.|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            68999997 99999999999999999999988754

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=87.98  E-value=0.63  Score=39.85  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ..+++.|||.|.+|..+|..|.+.|.+|+++.|.+.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            568999999999999999999999999999987653

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=87.91  E-value=1.5  Score=38.84  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ++|-+||-|..|..+|..|.+.|++|+++.|.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~   35 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   35 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCC
Confidence            68999999999999999999999999999887

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=87.84  E-value=0.55  Score=44.83  Aligned_cols=75  Identities=16%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             CCCeEEEECCChHHHH-HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652           70 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  148 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~  148 (352)
                      ..+++.|+|-|-+|+. +|..|.++|.+|+..+....       +     ..+.|++.|+++..+...     .      
T Consensus        18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~-----~------   74 (491)
T 2f00_A           18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------P-----VTQQLMNLGATIYFNHRP-----E------   74 (491)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCEEESSCCG-----G------
T ss_pred             cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCC-------H-----HHHHHHHCCCEEECCCCH-----H------
Confidence            4578999999999997 99999999999999876431       1     123567889999866421     0      


Q ss_pred             EEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          149 AVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       149 ~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                        .+ +    .+|.||++.|..+..+
T Consensus        75 --~~-~----~a~~vv~s~~i~~~~p   93 (491)
T 2f00_A           75 --NV-R----DASVVVVSSAISADNP   93 (491)
T ss_dssp             --GG-T----TCSEEEECTTCCTTCH
T ss_pred             --Hc-C----CCCEEEECCCCCCCCH
Confidence              01 1    3788899888765433

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=87.84  E-value=1.7  Score=38.92  Aligned_cols=57  Identities=28%  Similarity=0.433  Sum_probs=40.9

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 018652           71 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  133 (352)
Q Consensus        71 ~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~  133 (352)
                      .++|+|.|+ |++|..++..|.+.|.+|+++.|.+..     .+.-...+ +.+...+++++..
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~-----~~~~~~~~-~~l~~~~v~~~~~   67 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPR-----SPSKAKIF-KALEDKGAIIVYG   67 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCC-----CHHHHHHH-HHHHHTTCEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCC-----ChhHHHHH-HHHHhCCcEEEEe
Confidence            468999997 999999999999999999999887521     22222222 3356677777643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=87.78  E-value=0.75  Score=43.50  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      -+++|+|+|..|..+|..|...|++|+++++.+
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            479999999999999999999999999998764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=87.69  E-value=0.59  Score=44.72  Aligned_cols=33  Identities=21%  Similarity=0.137  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..++|||+|..|+-+|..|++.|.+|.+++++.
T Consensus         6 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   38 (504)
T 1n4w_A            6 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   38 (504)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            468999999999999999999999999999775

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=87.67  E-value=0.43  Score=40.42  Aligned_cols=36  Identities=19%  Similarity=0.196  Sum_probs=28.8

Q ss_pred             CCceEEEECCCc---EEEeCCCeEEecCeEEEccCCCCC
Q 018652            4 QDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS   39 (352)
Q Consensus         4 ~~~V~~id~~~~---~V~~~~g~~~~yd~lViAtG~~~~   39 (352)
                      +++|++|+.++.   .|.+++|+++.+|+||+|||....
T Consensus        88 ~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           88 QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            568899876543   466788888999999999998753

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=87.63  E-value=0.64  Score=40.77  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      .+|.|||.|.+|..+|..|.+.|.+|+++.+++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5799999999999999999999999999987653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=87.49  E-value=0.68  Score=40.99  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|||.|.+|..+|..|...|.+|+++.|..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56899999999999999999999999999987753

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=87.49  E-value=0.55  Score=44.96  Aligned_cols=54  Identities=13%  Similarity=0.124  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      .....+...++.|+++++++.|++|+..+ +.+ .|.+.+|+++++|.||++++..
T Consensus       214 ~~~l~~~l~~~lg~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          214 SGQVSERIMDLLGDRVKLERPVIYIDQTR-ENV-LVETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             THHHHHHHHHHHGGGEESSCCEEEEECSS-SSE-EEEETTSCEEEESEEEECSCGG
T ss_pred             HHHHHHHHHHHcCCcEEcCCeeEEEEECC-CeE-EEEECCCeEEEeCEEEECCCHH
Confidence            33444444445588999999999998643 344 4788899999999999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=87.48  E-value=0.64  Score=43.12  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++|+|+|+|.+|..++..+..+|.+|+++++++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            36899999999999999999999999999987764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=87.42  E-value=0.71  Score=40.73  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|+|.|.+|..+|..|...|.+|+++.+..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            57899999999999999999999999999887653

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=87.39  E-value=0.28  Score=48.03  Aligned_cols=25  Identities=36%  Similarity=0.761  Sum_probs=22.2

Q ss_pred             CCcEEeCCCCCC----------CCCCEEEeccccc
Q 018652          185 VGGIQVDGQFRT----------RMPGIFAIGDVAA  209 (352)
Q Consensus       185 ~g~i~vd~~~~t----------~~~~Iya~GD~a~  209 (352)
                      -|||.||.+.|+          ++||+||+|+|+.
T Consensus       357 ~GGi~vd~~~~vl~~~~~~~g~~I~GLyAaGe~a~  391 (588)
T 2wdq_A          357 MGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIAC  391 (588)
T ss_dssp             CCBEEBCTTCEEEEECTTSCEEEEEEEEECGGGEE
T ss_pred             CceEEECCCCCCcccccccCCCeeCCceeCccccc
Confidence            489999999988          7899999999864

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=87.33  E-value=0.49  Score=44.96  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=53.3

Q ss_pred             CCCeEEEECCChHHHH-HHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652           70 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  148 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~  148 (352)
                      ..+++.|+|-|-+|+. +|..|.++|.+|+..+....       +     ..+.|++.|+++..+...       .    
T Consensus        17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~-------~----   73 (475)
T 1p3d_A           17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-------V-----VTQRLAQAGAKIYIGHAE-------E----   73 (475)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-------H-----HHHHHHHTTCEEEESCCG-------G----
T ss_pred             cCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCC-------H-----HHHHHHhCCCEEECCCCH-------H----
Confidence            3578999999999997 99999999999999876431       1     123567789988765421       0    


Q ss_pred             EEEcCCCCEEEcCEEEEccCCCCCch
Q 018652          149 AVKLEDGSTIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       149 ~v~~~~g~~i~~D~vi~a~G~~p~~~  174 (352)
                        .+ +    .+|.||++.|..++.+
T Consensus        74 --~~-~----~a~~vv~s~~i~~~~~   92 (475)
T 1p3d_A           74 --HI-E----GASVVVVSSAIKDDNP   92 (475)
T ss_dssp             --GG-T----TCSEEEECTTSCTTCH
T ss_pred             --Hc-C----CCCEEEECCCCCCCCH
Confidence              01 1    3788899888765433

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=87.17  E-value=0.61  Score=41.19  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=29.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++.|||+|.+|.-+|..|.+.|.+|+++.+++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999987653

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=87.07  E-value=1.4  Score=38.86  Aligned_cols=33  Identities=15%  Similarity=0.251  Sum_probs=28.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+||-+||-|..|..+|..|.+.|.+|+++.|.
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~   37 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRT   37 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC---
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            368999999999999999999999999998876

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=86.97  E-value=0.79  Score=38.38  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=29.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..++.|||.|.+|..+|..|.+.|.+|+++.|+.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999887653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=86.97  E-value=0.74  Score=42.14  Aligned_cols=35  Identities=31%  Similarity=0.515  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|+|+|.+|..+|..+...|.+|+++.+++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            46899999999999999999999999999987653

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=86.88  E-value=0.76  Score=42.32  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++|+|+|+|.+|..++..+..+|.+|+++++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999999999999999999999988887764

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=86.87  E-value=0.37  Score=46.98  Aligned_cols=54  Identities=13%  Similarity=0.199  Sum_probs=36.0

Q ss_pred             CCcEEeCCCCC-------CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFR-------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~-------t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|||.+|.+.|       +.+||+||+|.++.....  ..+..-.....+.-.|++|++++..
T Consensus       507 ~GGl~id~~~~Vl~~~g~~~I~GLyAaGe~~~g~~g--~~~l~g~sl~~~~vfGr~Ag~~aa~  567 (572)
T 1d4d_A          507 MGGLVIDTKAEVKSEKTAKPITGLYAAGEVTGGVHG--ANRLGGNAISDIVTYGRIAGASAAK  567 (572)
T ss_dssp             CCEEEBCTTCEEEBSSSSSEEEEEEECSTTEESTTT--TSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEECCCCeEEcCCCCcccCCeeECeecccCCCC--CCCCchHhHHHHHHHHHHHHHHHHH
Confidence            48999998886       788999999999853211  0111111334577778888888764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=86.87  E-value=0.66  Score=41.76  Aligned_cols=77  Identities=16%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK  151 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~  151 (352)
                      .+|.|||+|.+|.-+|..|++.|.+|+++.|.+    +          .+.+++.|+.+..... . ....    + .+.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~----~----------~~~~~~~g~~~~~~~~-~-~~~~----~-~~~   62 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARGA----T----------LQALQTAGLRLTEDGA-T-HTLP----V-RAT   62 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH----H----------HHHHHHTCEEEEETTE-E-EEEC----C-EEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH----H----------HHHHHHCCCEEecCCC-e-EEEe----e-eEE
Confidence            589999999999999999999999999987631    1          1345667877753211 1 1100    0 111


Q ss_pred             cCCCC-EEEcCEEEEccCCC
Q 018652          152 LEDGS-TIDADTIVIGIGAK  170 (352)
Q Consensus       152 ~~~g~-~i~~D~vi~a~G~~  170 (352)
                       .+-+ .-.+|.||+|+...
T Consensus        63 -~~~~~~~~~D~Vilavk~~   81 (335)
T 3ghy_A           63 -HDAAALGEQDVVIVAVKAP   81 (335)
T ss_dssp             -SCHHHHCCCSEEEECCCHH
T ss_pred             -CCHHHcCCCCEEEEeCCch
Confidence             1111 13589999998763

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=86.85  E-value=0.76  Score=38.00  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=29.1

Q ss_pred             eEEEEC-CChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      +|+|.| +|.+|..++..|.+.|.+|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            689999 49999999999999999999998864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=86.82  E-value=0.69  Score=40.92  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=30.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..++|.|||.|..|..+|..|+ .|.+|+++++++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            4689999999999999999999 999999998765

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=86.82  E-value=0.77  Score=42.23  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=32.5

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+++++|+|+|.+|..++..+.++|.+|.++++.+
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            467899999999999999999999999999998653

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=86.76  E-value=0.48  Score=41.82  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++.|||+|.+|.-+|..|.+.|.+|+++.|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999875

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=86.44  E-value=0.74  Score=44.08  Aligned_cols=33  Identities=24%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..++|||+|..|+-+|..|++.|.+|.+++++.
T Consensus        12 ~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A           12 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            468999999999999999999999999999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=86.38  E-value=0.91  Score=42.28  Aligned_cols=35  Identities=26%  Similarity=0.184  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|+|.|.+|..+|..|+..|.+|.+.++.+
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            68999999999999999999999999999887653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=86.37  E-value=0.93  Score=42.45  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=32.3

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      -.+++++|+|.|.+|..+|..++..|.+|.+.++.+
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            378999999999999999999999999999887643

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=86.35  E-value=0.65  Score=45.96  Aligned_cols=38  Identities=16%  Similarity=0.152  Sum_probs=26.2

Q ss_pred             ccCCceEEEECCCc---EE------EeCCCe--EEecCeEEEccCCCCC
Q 018652            2 IYQDPVTSIDIEKQ---TL------ITNSGK--LLKYGSLIVATGCTAS   39 (352)
Q Consensus         2 ~~~~~V~~id~~~~---~V------~~~~g~--~~~yd~lViAtG~~~~   39 (352)
                      +.+++|+++..++.   .|      .+.+|+  .+.++.+|+|||....
T Consensus       171 ~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~  219 (643)
T 1jnr_A          171 YERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATL  219 (643)
T ss_dssp             ECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             EecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccc
Confidence            45678888875433   32      124564  5899999999998653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=86.33  E-value=0.82  Score=41.66  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+|.|||+|..|.-+|..|++.|.+|+++.+++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999988753

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=86.31  E-value=0.89  Score=40.05  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=31.8

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ..++|+|.|+ |++|..++..|.+.|.+|+++.|...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            3678999997 99999999999999999999988654

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=86.27  E-value=0.57  Score=43.98  Aligned_cols=38  Identities=24%  Similarity=0.503  Sum_probs=30.7

Q ss_pred             CccCCceEEEECCCc---EEEeCCCeEEecCeEEEccCCCC
Q 018652            1 MIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTA   38 (352)
Q Consensus         1 ~~~~~~V~~id~~~~---~V~~~~g~~~~yd~lViAtG~~~   38 (352)
                      ++++++|++|..++.   .|.+++|+.+.+|.||+|||..+
T Consensus       151 i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          151 IRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             EECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             EEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            357889999975443   57788887799999999999876

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=86.25  E-value=0.85  Score=41.89  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++|+|+|+|.+|..+|..+...|.+|+++.+.+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            46899999999999999999999999999887653

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=86.21  E-value=0.87  Score=40.32  Aligned_cols=35  Identities=11%  Similarity=0.113  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      .+++++|+|+|.+|..+|..|.+.|. +|+++.|..
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            57899999999999999999999997 899987753

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=86.14  E-value=0.65  Score=40.53  Aligned_cols=35  Identities=11%  Similarity=0.102  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|+|+|-.|..+|..|.+.|.+|+++.|..
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            56899999999999999999999999999988763

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=86.01  E-value=0.85  Score=37.90  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=28.9

Q ss_pred             eEEEECC-ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      +++|.|+ |.+|..++..|.+.|.+|+++.|++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5899996 9999999999999999999998764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=86.00  E-value=0.83  Score=40.62  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ...+|.|||.|.+|..+|..|++.|.+|+++.+.+.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            346899999999999999999999999999987653

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=86.00  E-value=0.81  Score=40.97  Aligned_cols=36  Identities=19%  Similarity=0.138  Sum_probs=29.7

Q ss_pred             cCCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           69 EKAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        69 ~~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ...++|+|.|+ |++|..++..|.+.|.+|+++.|.+
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   53 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP   53 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            35788999997 9999999999999999999998764

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=85.96  E-value=0.46  Score=45.52  Aligned_cols=54  Identities=15%  Similarity=0.185  Sum_probs=36.7

Q ss_pred             CCcEEeCCCCC------CCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFR------TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~------t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -||+.+|+++|      +.+|++||+|.|+.....  ..+..-.....+.-.|++|+++++.
T Consensus       449 ~GGl~~d~~~~Vl~~~g~~I~GLyAaGe~~gg~~g--~~y~~G~sl~~~~~fGr~Ag~~aa~  508 (510)
T 4at0_A          449 LGGLRTTVNSEVLHVSGEPIPGLFAAGRCTSGVCA--GGYASGTSLGDGSFYGRRAGISAAK  508 (510)
T ss_dssp             CCEECBCTTCEEEBTTSSEEEEEEECGGGBCCSCS--SSCCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             CcCeeECCCCceECCCCCCcCCeeeceecccCCCc--CCCCcHHhHHHHHHHHHHHHHHHHh
Confidence            58899999888      578999999999863211  0111111344577888999888763

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=85.92  E-value=0.88  Score=42.42  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=32.6

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      +.++++|.|+|+|.+|..++..+.++|.+|.++++.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~   67 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPD   67 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            457889999999999999999999999999998765

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=85.76  E-value=0.92  Score=39.77  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=30.2

Q ss_pred             CCCeEEEECCC-hHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGG-YIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG-~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|||.| ..|..+|..|.+.|.+||+.++.
T Consensus       160 ~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          160 YGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             TTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            68999999955 58999999999999999998754

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=85.73  E-value=0.9  Score=37.62  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=29.1

Q ss_pred             eEEEEC-CChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++.|+| +|.+|..+|..|.+.|.+|+++.|++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999 99999999999999999999987754

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=85.68  E-value=1.2  Score=42.26  Aligned_cols=34  Identities=26%  Similarity=0.176  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|+|+|.+|..+|..|+..|.+|.+.++.
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            6899999999999999999999999999887664

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=85.65  E-value=1.1  Score=42.75  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=32.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      -++|.|||+|..|..+|..|++.|.+|+++++++..
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~   40 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEA   40 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence            468999999999999999999999999999887543

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=85.63  E-value=0.92  Score=40.37  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~  104 (352)
                      ..+|+|||+|.+|.-+|..|++.|.  +|+++.+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999998  999988753

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=85.58  E-value=0.5  Score=46.56  Aligned_cols=52  Identities=17%  Similarity=0.295  Sum_probs=32.7

Q ss_pred             CCcEEeCCCCC---------CCCCCEEEeccccc--cCCc-cCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFR---------TRMPGIFAIGDVAA--FPLK-MYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~---------t~~~~Iya~GD~a~--~~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      -|||.||.+.|         |++||+||+|+|+.  .... .++..    ....+.-.|+.|++++..
T Consensus       367 mGGi~~d~~~~Vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggn----sL~~~~vfGr~Ag~~aa~  430 (621)
T 2h88_A          367 MGGIPTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGAN----SLLDLVVFGRACALTIAE  430 (621)
T ss_dssp             SCBEEBCTTSEEEEEETTEEEEEEEEEECGGGEECSSSTTSCCTTS----HHHHHHHHHHHHHHHHHH
T ss_pred             cCcEeECCCCeEeecccCCCcccCceEEccccccccccCCCCCchH----hHHHHHHHHHHHHHHHHH
Confidence            38999998776         57999999999874  2211 11222    233455566666666653

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=85.58  E-value=0.81  Score=41.33  Aligned_cols=33  Identities=21%  Similarity=-0.011  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++.|||+|.+|..+|..|++.|.+|+++.+++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999987653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=85.57  E-value=0.78  Score=43.63  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..-+|.|||.|++|.-+|..|++.|.+|+++.+.+
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            35689999999999999999999999999998764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=85.55  E-value=0.67  Score=42.52  Aligned_cols=37  Identities=14%  Similarity=0.416  Sum_probs=30.9

Q ss_pred             ccCCceEEEECCCc----EEEeCCCeEEecCeEEEccCCCC
Q 018652            2 IYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATGCTA   38 (352)
Q Consensus         2 ~~~~~V~~id~~~~----~V~~~~g~~~~yd~lViAtG~~~   38 (352)
                      +++++|++++.++.    .|++++|+++.+|.||.|+|...
T Consensus       126 ~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          126 LFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIAS  166 (399)
T ss_dssp             ECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred             EcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCCh
Confidence            56889999986543    67888898899999999999864

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=85.54  E-value=0.63  Score=40.80  Aligned_cols=34  Identities=24%  Similarity=0.190  Sum_probs=30.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ++|.|||.|.+|..+|..|.+.|.+|+++.+++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999988753

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=85.50  E-value=1.9  Score=38.11  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=30.5

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|||.|. .|..+|..|.+.|.+||++++.
T Consensus       164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~  198 (300)
T 4a26_A          164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG  198 (300)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            789999999654 8999999999999999999874

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=85.40  E-value=1  Score=41.26  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=32.5

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+++|.|+|+|..|..++..+.++|.+|.++++.+
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~   45 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSE   45 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            357899999999999999999999999999998653

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=85.37  E-value=0.77  Score=40.26  Aligned_cols=36  Identities=11%  Similarity=0.080  Sum_probs=32.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~  105 (352)
                      .+++++|+|+|-.|..++..|.+.|. +|+++.|...
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            57899999999999999999999998 8999988753

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=85.33  E-value=0.8  Score=41.15  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=32.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  106 (352)
                      .++++.|||-|.+|..+|..|...|.+|..+.+....
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  172 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHP  172 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcch
Confidence            3678999999999999999999999999999877543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=85.27  E-value=0.96  Score=39.97  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=30.0

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEec
Q 018652           70 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        70 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      .+++++|||.|. +|..+|..|.+.|.+||++++
T Consensus       164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs  197 (301)
T 1a4i_A          164 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS  197 (301)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEEC
Confidence            689999999995 799999999999999999863

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=85.23  E-value=2  Score=38.35  Aligned_cols=37  Identities=14%  Similarity=0.140  Sum_probs=32.8

Q ss_pred             cCCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           69 EKAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        69 ~~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ..+++|+|.| +|++|..++..|.+.|.+|+.+.|...
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4678999999 599999999999999999999988653

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=85.09  E-value=1.1  Score=40.05  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      .+++++|+|+|-+|..+|..|++.|. +|+++.|.+
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            57899999999999999999999998 899998863

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=85.08  E-value=0.72  Score=42.40  Aligned_cols=39  Identities=18%  Similarity=0.236  Sum_probs=31.9

Q ss_pred             CccCCceEEEECCCc--EEEeCCCeEEecCeEEEccCCCCC
Q 018652            1 MIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS   39 (352)
Q Consensus         1 ~~~~~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~~   39 (352)
                      ++++++|++++.++.  +|++.+|+++.+|.||.|+|....
T Consensus       143 i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          143 VIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             EEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             EEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence            357889999986543  677888988999999999998753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=85.06  E-value=0.89  Score=37.91  Aligned_cols=37  Identities=22%  Similarity=0.509  Sum_probs=32.1

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           71 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        71 ~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      .++++|.| +|++|..++..|.+.|.+|+++.|.+.-.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            36899999 59999999999999999999999876433

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=85.03  E-value=0.8  Score=40.41  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=31.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ..+|.|||.|.+|..+|..|++.|.+|+++.+++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999988763

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=85.03  E-value=1  Score=42.47  Aligned_cols=41  Identities=20%  Similarity=0.315  Sum_probs=34.4

Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          127 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       127 gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                      |.++++++.|++|...++ .+ .|.+.+|+++.+|.||++++.
T Consensus       228 ~~~i~~~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          228 DPRLQLNKVVREIKYSPG-GV-TVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             CTTEESSCCEEEEEECSS-CE-EEEETTSCEEEESEEEECSCH
T ss_pred             ccEEEcCCEEEEEEEcCC-cE-EEEECCCCEEEcCEEEEecCH
Confidence            678999999999986544 33 488899989999999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=85.02  E-value=0.86  Score=42.94  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+|.|||.|++|..+|..|++.|.+|+++.+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999998774

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=85.01  E-value=0.55  Score=43.72  Aligned_cols=40  Identities=20%  Similarity=0.400  Sum_probs=31.0

Q ss_pred             ccCC---ceEEEECCCc--E-EEeCCCeEEecCeEEEccCCCCCCC
Q 018652            2 IYQD---PVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTASRF   41 (352)
Q Consensus         2 ~~~~---~V~~id~~~~--~-V~~~~g~~~~yd~lViAtG~~~~~~   41 (352)
                      ++++   +|++|..++.  . |.+.+|+++.+|+||+|||.....+
T Consensus       179 ~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l  224 (438)
T 3dje_A          179 VTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQF  224 (438)
T ss_dssp             EESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGT
T ss_pred             EeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhh
Confidence            4566   8999986554  3 7788898899999999999875433

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=85.01  E-value=1  Score=40.10  Aligned_cols=35  Identities=14%  Similarity=0.056  Sum_probs=31.2

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           71 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      +++++|.|+ |++|..++..|.+.|.+|+++.|.+.
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            578999996 99999999999999999999987653

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=84.97  E-value=1.1  Score=40.31  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|||.|.+|..+|..|...|.+|+++.+..
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            35689999999999999999999999999987754

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=84.96  E-value=0.98  Score=39.94  Aligned_cols=34  Identities=26%  Similarity=0.140  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+|.|||.|.+|..+|..|++.|.+|+++.+++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999987654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=84.96  E-value=0.93  Score=42.77  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=32.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      -++|.|||+|..|.-+|..|++.|.+|+++++++.
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            47899999999999999999999999999988764

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=84.94  E-value=1  Score=40.44  Aligned_cols=34  Identities=15%  Similarity=0.098  Sum_probs=30.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -..++.|||.|..|.-+|..|.+.|.+|+++.|.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3678999999999999999999999999998775

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=84.92  E-value=1.1  Score=40.88  Aligned_cols=35  Identities=40%  Similarity=0.544  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++|+|+|+|.+|..++..+...|.+|+++.+++
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            35899999999999999999999999999987754

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=84.89  E-value=0.89  Score=40.59  Aligned_cols=35  Identities=26%  Similarity=0.322  Sum_probs=31.2

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~  105 (352)
                      ..+|.|||+|.+|..+|..|++.|. +|+++++.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            4689999999999999999999998 9999987753

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=84.85  E-value=0.99  Score=40.37  Aligned_cols=34  Identities=18%  Similarity=0.102  Sum_probs=30.8

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|||+|. +|..+|..|...|.+|++..|.
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            678999999996 5999999999999999998776

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=84.81  E-value=1.1  Score=40.21  Aligned_cols=36  Identities=17%  Similarity=0.358  Sum_probs=32.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      .++++.|||-|.+|-.+|..|...|.+|+.+.+.+.
T Consensus       139 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~  174 (324)
T 3hg7_A          139 KGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGR  174 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChH
Confidence            367999999999999999999999999999987653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=84.73  E-value=1.1  Score=39.60  Aligned_cols=34  Identities=26%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++|.||| .|.+|..+|..|++.|.+|+++.+++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            35899999 99999999999999999999998764

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=84.72  E-value=1.1  Score=39.30  Aligned_cols=34  Identities=18%  Similarity=0.140  Sum_probs=30.6

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|||.|. +|..+|..|.+.|.+||++++.
T Consensus       158 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  192 (288)
T 1b0a_A          158 FGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF  192 (288)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            689999999996 6999999999999999998643

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=84.66  E-value=0.95  Score=42.81  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=31.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      -++|.|||+|..|.-+|..|++.|.+|+++++++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46799999999999999999999999999987754

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=84.65  E-value=0.65  Score=43.30  Aligned_cols=37  Identities=19%  Similarity=0.376  Sum_probs=29.8

Q ss_pred             CccCCceEEEECCCc--EEEeCCCeEEecCeEEEccCCCC
Q 018652            1 MIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA   38 (352)
Q Consensus         1 ~~~~~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~   38 (352)
                      ++++++|++|+.++.  .|.+++| .+.+|+||+|||..+
T Consensus       149 i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          149 LRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             EECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             EEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence            356889999976543  6677777 799999999999875

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=84.63  E-value=1  Score=44.01  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHh-CCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtvv~~~~  104 (352)
                      -.++|||+|..|+-+|..|++ .|.+|.+++++.
T Consensus        25 ~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~   58 (587)
T 1gpe_A           25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (587)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999999 799999999774

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=84.58  E-value=0.95  Score=42.24  Aligned_cols=35  Identities=26%  Similarity=0.297  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|+|.|.+|..+|..|...|.+|+++++.+
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            57899999999999999999999999999987754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=84.55  E-value=1.2  Score=39.17  Aligned_cols=35  Identities=31%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      .+++++|+|+|-+|..++..|.+.|. +|+++.|..
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            57899999999999999999999998 699987753

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=84.49  E-value=1  Score=40.30  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ...+|.|||.|.+|..+|..|++.|.+|+++.+.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            34589999999999999999999999999987754

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=84.37  E-value=1.1  Score=39.00  Aligned_cols=34  Identities=9%  Similarity=0.202  Sum_probs=30.6

Q ss_pred             cCCCeEEEECCC-hHHHHHHHHHHhCCCcEEEEec
Q 018652           69 EKAKKVVVVGGG-YIGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        69 ~~~~~vvVvGgG-~~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      -.+++++|||.| ..|..+|..|.+.|.+||+.++
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~  182 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHS  182 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeC
Confidence            478999999976 5899999999999999999875

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=84.23  E-value=0.91  Score=43.91  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhC-CCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~  104 (352)
                      -.++|||+|..|+-+|..|++. +.+|.+++++.
T Consensus        14 ~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~   47 (546)
T 2jbv_A           14 FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGP   47 (546)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence            4699999999999999999998 89999999764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=84.13  E-value=1.2  Score=39.52  Aligned_cols=35  Identities=14%  Similarity=0.219  Sum_probs=31.0

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|.|+ |++|..++..|.+.|.+|+++.|..
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   45 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4678999996 9999999999999999999987753

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=84.12  E-value=1.1  Score=42.56  Aligned_cols=37  Identities=27%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ...+++|+|+|.|.+|..+|..++..|.+|+++++.+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3478999999999999999999999999998887653

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=84.09  E-value=1.6  Score=37.06  Aligned_cols=36  Identities=19%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             CCCeEEEECC-----------------ChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVGG-----------------GYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGg-----------------G~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      .+++++|-||                 |.+|..+|..++++|.+|+++.+...
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~   54 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRA   54 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4678888877                 58999999999999999999988654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=84.04  E-value=1.1  Score=39.28  Aligned_cols=35  Identities=20%  Similarity=0.116  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      .+++++|+|+|-.|..++..|.+.|. +|+++.|..
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            47899999999999999999999997 899988753

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=84.01  E-value=1.2  Score=39.06  Aligned_cols=34  Identities=15%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|||.|. .|..+|..|.+.|..||+.++.
T Consensus       159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~  193 (285)
T 3p2o_A          159 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK  193 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            689999999655 7999999999999999998753

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=83.94  E-value=1  Score=39.57  Aligned_cols=34  Identities=24%  Similarity=0.178  Sum_probs=30.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|+|+|-+|..+|..|.+.| +|+++.|..
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            5789999999999999999999999 999987653

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=83.92  E-value=1.4  Score=39.79  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|||.|.+|..+|..|...|.+|+++.+..
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~  197 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSK  197 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            35689999999999999999999999999988765

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=83.90  E-value=0.56  Score=39.72  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=29.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..++++|+|+|.+|..+|..|.+.|. |+++++++
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            45789999999999999999999999 99887654

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=83.88  E-value=1.2  Score=39.00  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=30.0

Q ss_pred             CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|||.|. .|..+|..|.+.|.+||+.++.
T Consensus       160 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  194 (285)
T 3l07_A          160 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF  194 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            689999999665 7999999999999999998753

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=83.87  E-value=0.75  Score=42.64  Aligned_cols=36  Identities=31%  Similarity=0.342  Sum_probs=30.0

Q ss_pred             CccCCceEEEECCCc--EEEeCCCeEEecCeEEEccCC
Q 018652            1 MIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC   36 (352)
Q Consensus         1 ~~~~~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~   36 (352)
                      ++++++|++|+.++.  .|++++|+++.+|+||+|+|.
T Consensus       220 i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~  257 (431)
T 3k7m_X          220 IRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPM  257 (431)
T ss_dssp             EESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCG
T ss_pred             eEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCc
Confidence            467899999986553  677788888999999999994

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=83.86  E-value=1.4  Score=38.69  Aligned_cols=35  Identities=14%  Similarity=0.165  Sum_probs=31.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      .+++++|+|+|-.|..++..|.+.|. +|+++.|..
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            57899999999999999999999995 899987753

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=83.82  E-value=0.94  Score=44.17  Aligned_cols=34  Identities=26%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC-CcEEEEecCCc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~  105 (352)
                      -.++|||||..||-+|..|++.+ .+|.|++.++.
T Consensus         7 yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            36899999999999999999987 69999998765

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=83.82  E-value=3.3  Score=39.03  Aligned_cols=97  Identities=16%  Similarity=0.281  Sum_probs=56.1

Q ss_pred             cEEEecCHHHHHHHHHhh----cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhC
Q 018652           51 GVHYIRDVADADALISSL----EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  126 (352)
Q Consensus        51 ~v~~~~~~~~~~~~~~~~----~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~  126 (352)
                      -++.+.+..+..++...+    ...++++|+|||.+|..+|..|.+ ..+|+++++..         +-.+.+.+.|.  
T Consensus       211 ~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~d~---------~r~~~la~~l~--  278 (461)
T 4g65_A          211 EVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIERNL---------QRAEKLSEELE--  278 (461)
T ss_dssp             EEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCH---------HHHHHHHHHCT--
T ss_pred             EEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEecCH---------HHHHHHHHHCC--
Confidence            344443333344443332    346899999999999999999865 58899998764         22334444432  


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          127 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       127 gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      +..++.+          |+.-..+ +..-..-++|.++.+|+..
T Consensus       279 ~~~Vi~G----------D~td~~~-L~ee~i~~~D~~ia~T~~D  311 (461)
T 4g65_A          279 NTIVFCG----------DAADQEL-LTEENIDQVDVFIALTNED  311 (461)
T ss_dssp             TSEEEES----------CTTCHHH-HHHTTGGGCSEEEECCSCH
T ss_pred             CceEEec----------cccchhh-HhhcCchhhcEEEEcccCc
Confidence            2333322          1110011 1111235699999999975

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=83.75  E-value=1.3  Score=40.47  Aligned_cols=33  Identities=12%  Similarity=-0.008  Sum_probs=30.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      .+++|+|+|.|.+|..+|..|.+.|.+|.+.++
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~  204 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDV  204 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcC
Confidence            578999999999999999999999999887654

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=83.71  E-value=1.4  Score=38.54  Aligned_cols=35  Identities=11%  Similarity=0.100  Sum_probs=30.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      .+++++|+|+|-.|..++..|.+.|. +|+++.|..
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            46899999999999999999999995 899987753

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=83.67  E-value=1.2  Score=39.30  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=28.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      +++++|.|+ |++|..++..|.+.|.+|+++.|..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            468999996 9999999999999999999988653

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=83.67  E-value=1.1  Score=41.39  Aligned_cols=37  Identities=19%  Similarity=0.366  Sum_probs=30.6

Q ss_pred             CccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCC
Q 018652            1 MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT   37 (352)
Q Consensus         1 ~~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~   37 (352)
                      ++++++|++|+.++..+.+.+|+++.+|+||+|+|..
T Consensus       206 i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          206 ILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             EESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHH
T ss_pred             EEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHH
Confidence            4678999999987665555678889999999999975

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=83.65  E-value=1.4  Score=39.28  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      .+++++|+|+|-+|..++..|.+.|. +|+++.|.+
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            47899999999999999999999998 799998863

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=83.62  E-value=1  Score=41.28  Aligned_cols=38  Identities=11%  Similarity=0.077  Sum_probs=31.1

Q ss_pred             CccCCceEEEECCC--cEEEeCCCeEEecCeEEEccCCCC
Q 018652            1 MIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA   38 (352)
Q Consensus         1 ~~~~~~V~~id~~~--~~V~~~~g~~~~yd~lViAtG~~~   38 (352)
                      ++++++|++++.++  ..|++++|+++.+|.||.|+|...
T Consensus       114 i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S  153 (397)
T 2vou_A          114 YHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  153 (397)
T ss_dssp             EETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             EEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence            35788999997654  367788898899999999999874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=83.58  E-value=1.3  Score=39.76  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++++.|||.|.+|..+|..|...|.+|+++.+..
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            5689999999999999999999999999988754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=83.50  E-value=0.96  Score=42.37  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=29.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++.|||.|.+|..+|..|++.|.+|+++.+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999999999999999999998764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=83.44  E-value=1.4  Score=38.59  Aligned_cols=35  Identities=31%  Similarity=0.326  Sum_probs=31.2

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|.| +|.+|..++..|.+.|.+|+++.|..
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            568999999 89999999999999999998887753

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=83.44  E-value=1.4  Score=37.21  Aligned_cols=34  Identities=12%  Similarity=0.023  Sum_probs=29.8

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           72 KKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ++++|.|+ |.+|..++..|.+.|.+|.++.|...
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            46888885 89999999999999999999988754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=83.37  E-value=3.8  Score=35.34  Aligned_cols=36  Identities=14%  Similarity=0.018  Sum_probs=30.9

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      .++.++|.| +|.+|..+|..|++.|.+|.++.+...
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   48 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQ   48 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccc
Confidence            577888888 468999999999999999999987643

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=83.26  E-value=1.5  Score=38.96  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|||.|.+|..+|..+...|.+|..+.+..
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP  175 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45789999999999999999999999999887654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=83.24  E-value=1.3  Score=39.89  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=31.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|||.|.+|..+|..+...|.+|+++.+..
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~  179 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR  179 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            45789999999999999999999999999887764

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=83.18  E-value=1.4  Score=37.37  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             CCCeEEEECC-----------------ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGG-----------------GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGg-----------------G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|-||                 |-+|..+|..|++.|.+|+++.+..
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~   58 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPV   58 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCc
Confidence            5788888888                 7899999999999999999987654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=83.15  E-value=2.2  Score=37.88  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      .+++++|.| +|++|..++..|.+.|.+|+++.|...
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            457899998 599999999999999999999987653

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=83.06  E-value=1.5  Score=39.06  Aligned_cols=35  Identities=23%  Similarity=0.200  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|||.|.+|..+|..+...|.+|+.+.+..
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD  175 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            45789999999999999999999999999887653

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=83.06  E-value=3.5  Score=35.10  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++.++|.| +|.+|..+|..|++.|.+|.++.|+.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG   41 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            567888888 56899999999999999999988764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=83.02  E-value=1.3  Score=39.23  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=30.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..++.|||.|.+|..+|..|.+.|.+|+++.+.+
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999988765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=82.92  E-value=1.5  Score=38.92  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=31.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+|.|||.|..|..+|..|.+.|.+|+++.+++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999987764

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=82.88  E-value=1.6  Score=38.89  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|||.|.+|..+|..|...|.+|+.+.+..
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  177 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTP  177 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCC
Confidence            35689999999999999999999999999988765

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=82.84  E-value=1.4  Score=40.12  Aligned_cols=35  Identities=9%  Similarity=0.107  Sum_probs=31.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ...+|.|||.|.+|..+|..|.+.|.+|+++.+.+
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            45789999999999999999999999999998764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=82.83  E-value=1.2  Score=39.99  Aligned_cols=35  Identities=26%  Similarity=0.296  Sum_probs=30.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  105 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~  105 (352)
                      ..+|+|||+|..|..+|..|+..|. +|+++++.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4589999999999999999999887 8999987754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=82.79  E-value=1.3  Score=38.06  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=29.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~  103 (352)
                      ...+|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999996 67888654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=82.72  E-value=1.4  Score=41.90  Aligned_cols=35  Identities=23%  Similarity=0.193  Sum_probs=32.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|+|.|.+|..+|..|...|.+|+++++.+
T Consensus       276 ~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~  310 (494)
T 3d64_A          276 AGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDP  310 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            67899999999999999999999999999987754

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=82.69  E-value=0.7  Score=43.83  Aligned_cols=74  Identities=15%  Similarity=0.069  Sum_probs=51.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  150 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v  150 (352)
                      -..+.|.|.|.+|+  |..|.++|.+|+..+....       +.     .+.|++.|++++.+..      . + .    
T Consensus        15 ~h~i~I~G~G~sgl--A~~l~~~G~~V~g~D~~~~-------~~-----~~~L~~~gi~~~~g~~------~-~-~----   68 (469)
T 1j6u_A           15 IHFVGIGGIGMSAV--ALHEFSNGNDVYGSNIEET-------ER-----TAYLRKLGIPIFVPHS------A-D-N----   68 (469)
T ss_dssp             EEEETTTSHHHHHH--HHHHHHTTCEEEEECSSCC-------HH-----HHHHHHTTCCEESSCC------T-T-S----
T ss_pred             EEEEEEcccCHHHH--HHHHHhCCCEEEEEcCCCC-------HH-----HHHHHhCCCEEECCCC------H-H-H----
Confidence            34577788888888  8999999999999876542       11     1346778999886531      0 0 0    


Q ss_pred             EcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          151 KLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       151 ~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                       +     -.+|.||+++|..++.+.+
T Consensus        69 -~-----~~~d~vV~spgi~~~~p~~   88 (469)
T 1j6u_A           69 -W-----YDPDLVIKTPAVRDDNPEI   88 (469)
T ss_dssp             -C-----CCCSEEEECTTCCTTCHHH
T ss_pred             -C-----CCCCEEEECCCcCCCCHHH
Confidence             0     1479999999998865543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=82.58  E-value=1  Score=39.28  Aligned_cols=34  Identities=24%  Similarity=0.166  Sum_probs=30.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|||+|.+|..+|..|.+.|.+|+++.|.
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            4689999999999999999999999888888765

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=82.57  E-value=1.4  Score=39.15  Aligned_cols=35  Identities=14%  Similarity=0.251  Sum_probs=31.1

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|.|+ |++|..++..|.+.|.+|+++.|..
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4678999996 9999999999999999999998754

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=82.56  E-value=1  Score=40.27  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=28.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      ++.|||.|.+|.-+|..|.+.|.+|+++.+
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            689999999999999999999999999877

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.48  E-value=1.2  Score=38.42  Aligned_cols=35  Identities=31%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             CCCeEEEECC-Ch-HHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGG-GY-IGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGg-G~-~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++.++|.|+ |. +|.++|..|++.|.+|.++.|..
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            5788999998 64 99999999999999999987754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=82.44  E-value=1.4  Score=38.24  Aligned_cols=31  Identities=26%  Similarity=0.176  Sum_probs=28.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ++.|||.|.+|..+|..|.+.|.+|+++.++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999999999999999999999888664

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=82.40  E-value=2.7  Score=37.12  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=29.1

Q ss_pred             CeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++++|.| +|++|..++..|.+.|.+|+++.+..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   35 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQ   35 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4789998 59999999999999999999988754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=82.38  E-value=1.2  Score=43.46  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=29.8

Q ss_pred             CeEEEECCChHHHHHHHHHHhC-CCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtvv~~~~  104 (352)
                      -.++|||||..||-+|..|++. +.+|.|++.++
T Consensus        20 yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           20 VDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4799999999999999999974 78999999876

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=82.34  E-value=1.5  Score=38.40  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=30.0

Q ss_pred             CeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           72 KKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ++|+|.|+ |++|..++..|.+.|.+|+++.+.+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   35 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSS   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            36899997 99999999999999999999987653

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=82.33  E-value=5.2  Score=34.63  Aligned_cols=35  Identities=17%  Similarity=0.001  Sum_probs=30.2

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+|.++|.|+ +.+|.++|..|++.|.+|.++.+..
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~   45 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICK   45 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccc
Confidence            5678888884 6799999999999999999998764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=82.31  E-value=3.2  Score=35.74  Aligned_cols=51  Identities=24%  Similarity=0.364  Sum_probs=37.4

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCc
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  128 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV  128 (352)
                      .+++++|.| +|.+|.++|..|++.|.+|.++.|..        +...+.+.+.+++.+.
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~--------~~~~~~~~~~~~~~~~   79 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSN--------AEVADALKNELEEKGY   79 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC--------HHHHHHHHHHHHhcCC
Confidence            567788887 47899999999999999999987743        2333445555666553

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=82.27  E-value=4  Score=35.00  Aligned_cols=55  Identities=18%  Similarity=0.303  Sum_probs=38.5

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEE
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  130 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~  130 (352)
                      .++.++|.|+ +.+|..+|..|++.|.+|.++.+..+      +.+-.+.+.+.+++.|.++
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~------~~~~~~~~~~~~~~~~~~~   65 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAK------DSDTANKLKDELEDQGAKV   65 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGG------GHHHHHHHHHHHHTTTCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCcc------CHHHHHHHHHHHHhcCCcE
Confidence            4678888884 68999999999999999999876532      2233344555566655443

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=82.16  E-value=1.5  Score=38.84  Aligned_cols=32  Identities=31%  Similarity=0.383  Sum_probs=29.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCC--cEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~  104 (352)
                      +|+|||+|.+|..+|..|+..|.  +|+++++.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            79999999999999999999998  899998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	1e-24
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	3e-24
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	5e-23
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	7e-22
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	1e-17
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	4e-17
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	9e-17
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	5e-16
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	9e-16
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	1e-13
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	3e-13
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	6e-13
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	3e-12
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	5e-12
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	1e-10
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	7e-10
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	2e-09
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	2e-09
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	7e-09
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	8e-09
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	9e-09
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	1e-08
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	1e-08
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	1e-08
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	2e-08
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	7e-08
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	9e-08
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	1e-06
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	1e-06
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-06
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	4e-06
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	9e-06
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-05
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	1e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	4e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	6e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	7e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	8e-05
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	3e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	8e-04
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.001
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.002
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.002
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	0.002
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.002
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	0.002
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	0.003
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.003
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	0.004

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 95.4 bits (236), Expect = 1e-24
 Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 42  PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 101
                G      Y+R + DA+ +   L    ++VV+GGGYIG+EVAA A+   +  T++ 
Sbjct: 6   ASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLD 65

Query: 102 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDA 160
               +L+R+  P ++  YE L+++ GV    G  +   E  +D  +V AV  EDG+ + A
Sbjct: 66  TAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPA 125

Query: 161 DTIVIGIG 168
           D ++ GIG
Sbjct: 126 DLVIAGIG 133

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 93.6 bits (232), Expect = 3e-24
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 45  IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 104
           + G    VH +R + DA  + + L    ++++VGGG IG+E+AA A    +  +++  + 
Sbjct: 4   LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63

Query: 105 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 164
            L+ R    +LA    + +   GV      S+     G       V L+DG+ I AD +V
Sbjct: 64  RLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVV 117

Query: 165 IGIG 168
           +GIG
Sbjct: 118 VGIG 121

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (225), Expect = 5e-23
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 41  FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLD 96
                          R + D  +L     + K + ++GGG++G E+A A          +
Sbjct: 7   IDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTE 66

Query: 97  TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 156
              +FPE   + ++    L+    +  ++ GVK +  A ++++          +KL+DG 
Sbjct: 67  VIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV--SSGKLLIKLKDGR 124

Query: 157 TIDADTIVIGIG 168
            ++ D IV  +G
Sbjct: 125 KVETDHIVAAVG 136

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 87.6 bits (216), Expect = 7e-22
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 46  GGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 103
           G  L  ++ +R    A  L       +   VVV+G GYIG+E A A        T+I   
Sbjct: 3   GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62

Query: 104 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 163
           +  L             +  + N +    G +++  E   DGRV  V + D +  DAD +
Sbjct: 63  DRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLV 119

Query: 164 VIGI 167
           V+ +
Sbjct: 120 VVAV 123

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 75.9 bits (186), Expect = 1e-17
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 49  LPG---VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 105
           + G   +  +R + DAD +  S+E + + +++GGG+IG+E+A           +I     
Sbjct: 7   IKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66

Query: 106 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 165
            L       L+   + + ++ GVKF   + +   EA  +G      L +   I+    + 
Sbjct: 67  FLG--LDEELSNMIKDMLEETGVKFFLNSELL--EANEEGV-----LTNSGFIEGKVKIC 117

Query: 166 GIG 168
            IG
Sbjct: 118 AIG 120

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 74.4 bits (182), Expect = 4e-17
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 49  LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108
           +PGV Y  D     AL       ++V VVG GYIG+E+     G    T +    +  L 
Sbjct: 2   IPGVEYGIDSDGFFAL---PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP 58

Query: 109 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168
                  ++   ++    G +    A  K +   +DG +  ++LEDG +   D ++  IG
Sbjct: 59  SFDPMI-SETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG 116

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 75.2 bits (183), Expect = 9e-17
 Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 18/182 (9%)

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE----------Q 121
             VVV+G G   +   A          I    +   +    P L++ +            
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63

Query: 122 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 181
             +   V+++ G + +      D +   V L DG T+   T+V+  GA P          
Sbjct: 64  CKRAPEVEWLLGVTAQ----SFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALA 119

Query: 182 NSSV----GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 237
            ++      GI VD   RT  P ++A+GDV      +  R  R+E   +A+       + 
Sbjct: 120 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 179

Query: 238 LL 239
           L+
Sbjct: 180 LV 181

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 73.3 bits (178), Expect = 5e-16
 Identities = 40/182 (21%), Positives = 62/182 (34%), Gaps = 16/182 (8%)

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTII--------------FPENHLLQRLFTPSLAQ 117
             VV+VG G  G+EVA        +  I                 + +L  +    SL  
Sbjct: 4   DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 63

Query: 118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 177
           R    Y    ++ + G  +  +      +V                  G    P      
Sbjct: 64  RTPDAYAAQNIQLLGGTQVTAINRDRQ-QVILSDGRALDYDRLVLATGGRPLIPNCELAS 122

Query: 178 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 237
             GL     GI ++   +T  P I A+GD A F  ++YDR  R+E V +A + A+     
Sbjct: 123 AAGLQV-DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI 181

Query: 238 LL 239
           L 
Sbjct: 182 LC 183

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 70.5 bits (172), Expect = 9e-16
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 49  LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108
           + G+       +      +++++KK+ +VG GYI +E+        +D+ I    N +L+
Sbjct: 4   VKGIENTISSDEFF----NIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR 59

Query: 109 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGI 167
           + F  S+    E   ++N +  V  A +  ++  SD  + ++ L DG   +  D ++  +
Sbjct: 60  K-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-SIHLSDGRIYEHFDHVIYCV 117

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 64.8 bits (157), Expect = 1e-13
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 49  LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL 106
           +PG+ +     +A  L    E  ++V+ VGGG+I +E A        K     +     +
Sbjct: 1   IPGIEHCISSNEAFYL---PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57

Query: 107 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 166
           + R F  +L +   +    NG++ +   +   +E  +DG   +V  E G  +D D +++ 
Sbjct: 58  ILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMA 116

Query: 167 I 167
           I
Sbjct: 117 I 117

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 63.5 bits (153), Expect = 3e-13
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 58  VADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL 115
           V D   L+  L  E    VVVVGG    +E           T ++     L         
Sbjct: 7   VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNET 65

Query: 116 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV---KLEDGSTIDADTIVIGIG 168
                   ++ G++ + G+++  +E  ++GRV AV          I+ D + +G+G
Sbjct: 66  RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 64.9 bits (156), Expect = 6e-13
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 23/190 (12%)

Query: 73  KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHLL------------QRLFTPSLAQR 118
           KV+V+G  + G E       +    +       + +             +     S+   
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 119 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTVSPFE 177
             +  +  GV       I  ++              +    + D ++I  GA P      
Sbjct: 62  TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121

Query: 178 RVGLNSSV--------GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 229
           R               G I+ D   RT  P +FA+GD         D    +    +AR+
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181

Query: 230 SAQHCIKALL 239
             +  +K L 
Sbjct: 182 QGRFAVKNLE 191

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
            K +VVG  Y+ +E A    G  LD T++     L    F   +A +  +  +++G+KF+
Sbjct: 21  GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78

Query: 132 KGASIKNLEAGSDGRVAAVKL-------EDGSTIDADTIVIGIG 168
           +      +E    G    +K+       E+    + +T+++ +G
Sbjct: 79  RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 59.8 bits (144), Expect = 5e-12
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 69  EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQN 126
           E  K+ + VGGGYI +E A     +K     +       ++ R F   L ++  +  + N
Sbjct: 16  EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 75

Query: 127 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168
           G+      +   +   +DG    V  E G+  D D +++ IG
Sbjct: 76  GINVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIG 116

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 49  LP-GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107
           LP G   I     +   ++     + +VVVGGGYIG+E+  A        +++     +L
Sbjct: 2   LPLGGPVI----SSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL 57

Query: 108 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 167
               +   A   E L ++ G+    G S++  E G    +A         ++AD +++ +
Sbjct: 58  PTYDSELTAPVAESL-KKLGIALHLGHSVEGYENG--CLLANDGKGGQLRLEADRVLVAV 114

Query: 168 G 168
           G
Sbjct: 115 G 115

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 7e-10
 Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 46/218 (21%)

Query: 72  KKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENH------------------------ 105
              +++GGG      A +  A        I+  +                          
Sbjct: 5   VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTL 64

Query: 106 -----------LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 154
                      +  +  +  ++ +     +  GV  + G  +  L+   +        + 
Sbjct: 65  RFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQI 124

Query: 155 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 214
                      G      ++    + ++S  GG +V+ + + R   I+  GD A F    
Sbjct: 125 TYEKCLIAT-GGTEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIK 182

Query: 215 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF 252
             R  RVEH DHA  S +   + +  A        PY+
Sbjct: 183 LGRR-RVEHHDHAVVSGRLAGENMTGAAK------PYW 213

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 49  LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108
           +PG            L    E   + V+VG GYI +E+A         T+++   + +L+
Sbjct: 3   IPGASLGITSDGFFQL---EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR 59

Query: 109 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDG------STIDAD 161
             F   ++    +  +  GV+ +K + +K ++    G  V+ V    G         D D
Sbjct: 60  S-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVD 118

Query: 162 TIVIGIG 168
            ++  IG
Sbjct: 119 CLLWAIG 125

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 14/149 (9%), Positives = 36/149 (24%), Gaps = 8/149 (5%)

Query: 33  ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 92
             G          G        +            + K   ++     ++   +A     
Sbjct: 4   TDGTNCLTHDPIPGADASLPDQL-TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT 62

Query: 93  WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 152
              + TI+   +      FT        +   +  V+ +       +E G       +++
Sbjct: 63  AGHEVTIVSGVHLANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPGR------MEI 115

Query: 153 EDGSTIDADTIVIGIGAKPTVSPFERVGL 181
            +     +     G G  P  +      +
Sbjct: 116 YNIWGDGSKRTYRGPGVSPRDANTSHRWI 144

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (125), Expect = 7e-09
 Identities = 29/164 (17%), Positives = 49/164 (29%), Gaps = 20/164 (12%)

Query: 70  KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 129
           K  K++++G G  G   A  A    L   +I       Q   T  +           G  
Sbjct: 4   KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63

Query: 130 FVKGASIKNLEAGSDGRVAAVKLEDGST-----------IDADTIVIGIGAKP----TVS 174
            ++       +  ++     +   D                 D ++I  GA        +
Sbjct: 64  LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123

Query: 175 PFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFPLK 213
                 L    G I+V         +T +PG+FA GDV     +
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 51.0 bits (121), Expect = 8e-09
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 50  PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 109
           P   +   + D+   ++  E  K +VV+GGGYIG+E+  A   +    TI+     +L  
Sbjct: 1   PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG 60

Query: 110 LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVI 165
            F   +A   ++  ++ GV+ V  A  K  E   DG  V      +  TIDAD +++
Sbjct: 61  -FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 51.0 bits (121), Expect = 9e-09
 Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 49  LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108
           LP +     + D+   ++  E   K++++GGG IG+E+            ++   +  L 
Sbjct: 4   LPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-LM 62

Query: 109 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIG 166
           +     L + +++  +      +       +E   DG     +  +        D +++ 
Sbjct: 63  QGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVA 122

Query: 167 IG 168
            G
Sbjct: 123 AG 124

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 53.0 bits (126), Expect = 1e-08
 Identities = 28/218 (12%), Positives = 59/218 (27%), Gaps = 58/218 (26%)

Query: 52  VHYIRDVADADALISSLEKAKK----VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL- 106
           +  I +  D   +I ++++        + +GGG  G   +A          I+     L 
Sbjct: 19  IDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78

Query: 107 ---LQRLFTPS-----------------------------------LAQRYEQLYQQNGV 128
                    P                                    +          +G+
Sbjct: 79  GSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGI 138

Query: 129 KFVKGASIKNLEAGSDGRV----AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 184
              +     NLE   +              G    A  +++ +GA P          ++ 
Sbjct: 139 MNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAE 198

Query: 185 V-----------GGIQVDGQFRTRMPGIFAIGDVAAFP 211
           +           G + V+   +T +P ++A+GD+   P
Sbjct: 199 LAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 236

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 15/173 (8%)

Query: 73  KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 132
           KVV+VG G  G E+A        + T+I  E          S          +     + 
Sbjct: 2   KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60

Query: 133 ------GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 186
                        EA    R   V + +   +  DT+V+  GA        R G+++   
Sbjct: 61  WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-R 118

Query: 187 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 239
           GI +D  FRT    ++AIGD A +                A + A+     L 
Sbjct: 119 GILIDDNFRTSAKDVYAIGDCAEYSG------IIAGTAKAAMEQARVLADILK 165

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 58  VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 117
           + D+   +       K+ V+G G IG+E+ +       + T++   +          +A+
Sbjct: 9   IVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-FLPAVDEQVAK 67

Query: 118 RYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIG 168
             +++  + G+K + GA +   E  +    V  V  E   +   D +++ +G
Sbjct: 68  EAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 20/122 (16%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 50  PGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 108
           PG+      +  +   +S  E  K++ ++GGG IG+E+ +         T++  +   + 
Sbjct: 1   PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ-IG 59

Query: 109 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTI 163
                 +A+  ++  ++ G+ F     + + +   D  V  + +ED        ++A+ +
Sbjct: 60  ASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVL 119

Query: 164 VI 165
           ++
Sbjct: 120 LV 121

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 49.8 bits (117), Expect = 7e-08
 Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 22/187 (11%)

Query: 71  AKKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 128
            +KVVVVGGG  G   A         ++ T+I P         +  +     +L      
Sbjct: 2   GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61

Query: 129 KFVKGASIKNL----EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP----------TVS 174
                A    +      G D     VK   G+    D  V+  G +            ++
Sbjct: 62  YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIA 121

Query: 175 PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA-AFPLKMYDRTARVEHVDHARQSAQH 233
               +  ++    + +     +   GI  IGD + A P+     +A        + +A  
Sbjct: 122 QIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSA----NSQGKVAAAA 177

Query: 234 CIKALLS 240
            +  LL 
Sbjct: 178 -VVVLLK 183

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 49.8 bits (118), Expect = 9e-08
 Identities = 47/234 (20%), Positives = 71/234 (30%), Gaps = 74/234 (31%)

Query: 74  VVVVGGGYIGMEVAAAAVGWKLDTTII--------------------------------- 100
            +VVG G  G   A  A       TI+                                 
Sbjct: 6   TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHS 65

Query: 101 -------------FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG-ASIKNLEAGSDGR 146
                        F +    +      L    E L + N V+ VKG A            
Sbjct: 66  EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFV-----DANT 120

Query: 147 VAAVKLEDGSTIDADTIVIGIGAKPTVSP----------FERVGLN-SSVGGIQVDGQFR 195
           V  V  +   T      +I  G++P               E++G+  ++ G I+VD Q R
Sbjct: 121 VRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 180

Query: 196 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL 249
           T +P IFAIGD+   P         + H   A    +   +A+    +   DY+
Sbjct: 181 TSVPNIFAIGDIVPGPA--------LAHK--ASYEGKVAAEAIAGHPSA-VDYV 223

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 34/191 (17%), Positives = 50/191 (26%), Gaps = 53/191 (27%)

Query: 74  VVVVGGGYIGMEVAAAAVGWKLDTTII----------------------FPENHLLQRLF 111
            +V+GGG  G+  A  A        ++                         +       
Sbjct: 6   YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH 65

Query: 112 TPSLAQRYEQLYQQNGVKFVKGASIK------------------NLEAGSDGRVAAVKLE 153
                   E  +    +K  + A +                      A            
Sbjct: 66  ADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV 125

Query: 154 DGSTIDADTIVIGIGAKPTVSPFERV----GLN--------SSVGGIQVDGQFRTRMPGI 201
            G    A  I+I  G  P+  P ERV     L+           G I VD    T + GI
Sbjct: 126 SGKKYTAPHILIATGGMPST-PHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGI 184

Query: 202 FAIGDVAAFPL 212
           +A+GDV    L
Sbjct: 185 YAVGDVCGKAL 195

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 49  LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 107
           LPGV    + +  +   ++  E  KK+VV+G GYIG+E+ +       + T++   +  +
Sbjct: 2   LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE-I 60

Query: 108 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV 164
                  + +++++  ++ G+KF     +  ++   DG    V+   G   + I+AD ++
Sbjct: 61  VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVL 120

Query: 165 I 165
           +
Sbjct: 121 V 121

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 53/191 (27%)

Query: 74  VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------LQRLFTPSLAQRYEQ 121
           VV++GGG  G   A  A      TT I     L               L +  +    + 
Sbjct: 6   VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH 65

Query: 122 LYQQNGVKFV------------KGASIKNLEAGSDGRVAAVKLE---------------- 153
            +  +GVK              K  ++ NL  G +G     K+                 
Sbjct: 66  SFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISV 125

Query: 154 -----DGSTIDADTIVIGIGAKPT-VSPF------ERVGLN-SSVGGIQVDGQFRTRMPG 200
                + + +    I+I  G+     +PF      +++G+    +G I V+ +F T + G
Sbjct: 126 DTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSG 185

Query: 201 IFAIGDVAAFP 211
           ++AIGDV   P
Sbjct: 186 VYAIGDVIPGP 196

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 44.7 bits (104), Expect = 4e-06
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 15/155 (9%)

Query: 74  VVVVGGGYIGMEVAAAAVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
           V++VG G  G   A  +    + T ++       +L  +   +     +   Q+      
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63

Query: 132 KGASIKNLEAGSDGRVAAVKLEDG-------------STIDADTIVIGIGAKPTVSPFER 178
                 +++       + +                         IV      P  +  E 
Sbjct: 64  VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123

Query: 179 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 213
               + +G I +D +  T + G+FA GD    P K
Sbjct: 124 AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (101), Expect = 9e-06
 Identities = 26/166 (15%), Positives = 42/166 (25%), Gaps = 45/166 (27%)

Query: 40  RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV-------- 91
           R P   G   P V    DV     L        KV ++G G IG + A            
Sbjct: 3   RTPPIDGIDHPKVLSYLDV-----LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ 57

Query: 92  -----------------------------GWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 122
                                               ++  +     +    +    +   
Sbjct: 58  NIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTT 117

Query: 123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 168
               GVK + G S +  +   DG    +   +   +  D +VI  G
Sbjct: 118 LLSRGVKMIPGVSYQ--KIDDDGLHVVIN-GETQVLAVDNVVICAG 160

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 12/104 (11%)

Query: 121 QLYQQNGVKFVKG-ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--- 176
                 G+ F +G  ++++         A        T+D + I++  G+ P        
Sbjct: 112 MFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVP 171

Query: 177 -------ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPL 212
                  E+ G+  +  G I+VD   +T +  I+AIGDV    +
Sbjct: 172 RSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM 215

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 22/167 (13%)

Query: 69  EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII----------------FPENHLLQRLFT 112
               ++ +VG G      A  A   +L   +                   +         
Sbjct: 3   THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPE 62

Query: 113 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 172
             L       +++   +F      + +              D   I AD +++ IGA   
Sbjct: 63  GILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAK 122

Query: 173 VSPFERVGLNSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFPLK 213
                   L+  V     G +    G  +T +PG+FA GDV     +
Sbjct: 123 GHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 6/84 (7%), Positives = 24/84 (28%)

Query: 128 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG 187
           +   K    ++L       ++    +          ++ I     +   + + +N +   
Sbjct: 198 LAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHD 257

Query: 188 IQVDGQFRTRMPGIFAIGDVAAFP 211
           + +       +  ++  G   A  
Sbjct: 258 VVIHSGAYAGVDNMYFAGMEVAEL 281

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFPL 212
           G I+VD Q RT +P I+AIGD+   P+
Sbjct: 179 GFIEVDKQMRTNVPHIYAIGDIVGQPM 205

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 48/183 (26%)

Query: 74  VVVVGGGYIGMEVAAAAVGWKLDTTII-----------FPENHLLQRLFTPSLAQRYEQL 122
            + +GGG  G+     A  +     +I                         + +     
Sbjct: 5   YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64

Query: 123 YQQNGVKFV------------KGASIKNLEAGSDGRVAAVKLE----------------D 154
               G                + A I  +    +  +    ++                +
Sbjct: 65  GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124

Query: 155 GSTIDADTIVIGIGAKPTVSPF---ERVGLN------SSVGGIQVDGQFRTRMPGIFAIG 205
           G TI AD I+I  G +P+       + + L       +  G I VD    T + GI+A+G
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184

Query: 206 DVA 208
           D  
Sbjct: 185 DNT 187

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 119 YEQLYQQNGVKFVKG-ASI--KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 175
            E L+++N V + KG  S   +     +        +++   +D   I++  G++ T   
Sbjct: 102 IELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV 161

Query: 176 ----------FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 211
                      E++GL     G + +D QF ++ P I  +GDV   P
Sbjct: 162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP 208

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 50/189 (26%)

Query: 74  VVVVGGGYIGMEVAAAAVGWKLDTTII-----------FPENHLLQRLFTPSLAQRYEQL 122
           ++++GGG  G   A  A    + T ++                    +       +  + 
Sbjct: 8   LLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRF 67

Query: 123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-------------------------- 156
            + + +     +   ++      +   V                                
Sbjct: 68  TEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVE 127

Query: 157 ----TIDADTIVIGIGAKPTVSPFERVGLNSSV---------GGIQVDGQFRTRMPGIFA 203
                I  + +++  G+     P        ++           I +D + +T M  ++A
Sbjct: 128 VDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWA 187

Query: 204 IGDVAAFPL 212
           IGDVA  P+
Sbjct: 188 IGDVAGEPM 196

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 34/197 (17%), Positives = 53/197 (26%), Gaps = 21/197 (10%)

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 131
            K+ ++G G   +  A+           IF +   +  L T  + Q        N    +
Sbjct: 5   AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIEL 64

Query: 132 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV------SPFERVGLNSSV 185
                  +  G       + L            IGIG    +           +  N   
Sbjct: 65  MKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWD 124

Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC------IKALL 239
                    +T  P +FA GD+          T     V+      Q        I+A  
Sbjct: 125 LPEVDPETMQTSEPWVFAGGDIVGMA-----NTT----VESVNDGKQASWYIHKYIQAQY 175

Query: 240 SAQTHTYDYLPYFYSRV 256
            A       LP FY+ V
Sbjct: 176 GASVSAKPELPLFYTPV 192

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFP 211
             + VD   RT   GI+A GD     
Sbjct: 182 NYLTVDRVSRTLATGIYAAGDCTGLL 207

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFP 211
           GG+QVD   RT +  I+AIGDV    
Sbjct: 188 GGVQVDEYSRTNVSNIYAIGDVTNRV 213

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 8/51 (15%), Positives = 15/51 (29%)

Query: 114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 164
            L Q + +L    G  ++    I  +    D            T  A  ++
Sbjct: 237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVI 287

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 72  KKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-----PENHLLQRLFTPSLAQRYEQLYQQN 126
             V+V+G G    + A +A+        +           +      +  ++ E L   +
Sbjct: 46  GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLS 105

Query: 127 GVKF------VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 169
             K       +        E    G+    + +    + AD ++   G+
Sbjct: 106 PRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQI-VHLKADVVISAFGS 153

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFP 211
           G I VD    T +PG++AIGDV    
Sbjct: 179 GFIYVDDYCATSVPGVYAIGDVVRGA 204

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 23/129 (17%)

Query: 128 VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGI-------------GAKPTV 173
           V  +  +  ++    S   ++A   +        D +++               G    +
Sbjct: 252 VLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLL 311

Query: 174 SPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH-VDHARQSAQ 232
           +    V  ++    +    +    +PG+F  G+              V   +     +A 
Sbjct: 312 NFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHR--------GGLSVGKALSSGCNAAD 363

Query: 233 HCIKALLSA 241
             I  L S 
Sbjct: 364 LVISYLESV 372

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 19/168 (11%)

Query: 78  GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 137
               +G   A  A           P+       F   L    + L    G     GA ++
Sbjct: 184 RSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVE 243

Query: 138 NLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPT-----------VSPFERVGLNSSV 185
            L     G R+   +    + +    +V+   A  T            +    +     +
Sbjct: 244 GLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHL 303

Query: 186 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 233
             +        R+PG+  IG+        Y      + + +A Q A  
Sbjct: 304 ERVAAIDAALQRLPGLHLIGN-------AYKGVGLNDCIRNAAQLADA 344

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 157 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQ-------VDGQFRTRMPGIFAIGDVAA 209
            ++   I+I +G KP     +   L      ++       VD   RT +  I+A+GD   
Sbjct: 138 ILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCM 197

Query: 210 FPLKMYDRTARVEHV 224
                      +  +
Sbjct: 198 VKKSKEIEDLNLLKL 212

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 7/110 (6%)

Query: 16  TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 75
            +  +         +I+ATG +                   D+     +    +     +
Sbjct: 129 PMTADDVLQYGADKVIIATGAS-ECTLWNELKARESEWAENDIKGIYLIG---DAEAPRL 184

Query: 76  VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-FTPSLAQRYEQLYQ 124
           +    + G  VA           I +    +       P     ++  Y+
Sbjct: 185 IADATFTGHRVAREIEEANPQIAIPYKRETIAWGTPHMP--GGNFKIEYK 232

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.94
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.91
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.91
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.91
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.91
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.89
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.88
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.86
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.83
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.82
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.82
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.81
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.79
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.78
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.78
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.77
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.76
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.76
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.75
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.75
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.74
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.74
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.74
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.73
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.72
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.72
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.72
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.72
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.71
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.71
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.69
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.68
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.68
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.68
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.68
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.65
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.59
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.59
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.5
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.48
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.46
d1q1ra3	103	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.41
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.39
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.37
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.37
d1d7ya3	97	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.36
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.28
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.2
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.2
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.2
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.14
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.12
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.12
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.03
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.02
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.01
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.93
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.93
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.91
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.89
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.86
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.85
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.79
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.75
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.74
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.72
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.66
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.65
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.64
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.63
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.51
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.45
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.43
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.41
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.36
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.33
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.33
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.29
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.28
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.16
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.13
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.06
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.05
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.92
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.86
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.72
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.7
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.68
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.49
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.49
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.36
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.31
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.3
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.27
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.27
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.24
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.18
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.15
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.15
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.09
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.07
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.97
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.86
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.84
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.81
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.7
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.57
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.53
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	96.44
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.38
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.38
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.11
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	95.91
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	95.79
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.72
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.62
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	95.53
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	95.49
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	95.46
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	95.41
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.25
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	95.22
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.11
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.01
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	94.95
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	94.87
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.79
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.74
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.57
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.49
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.24
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.97
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.94
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.65
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.61
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.59
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	93.57
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.55
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.39
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.24
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.01
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.93
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.83
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.77
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	92.72
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	92.58
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	92.54
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.19
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	92.02
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.95
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	91.83
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	91.54
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.52
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	91.34
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	90.85
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.52
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	90.51
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.39
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	90.39
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	90.11
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.06
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	89.89
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.72
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	89.65
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.61
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	89.17
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	88.97
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	88.6
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	88.6
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.57
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	88.56
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	88.55
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	88.52
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.37
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.27
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	88.2
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.14
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	88.12
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.04
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	87.97
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.79
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	87.64
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	87.52
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	86.98
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	86.96
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	86.92
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	86.7
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	86.32
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	85.8
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	85.72
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.69
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	85.68
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.52
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	85.43
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.39
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	85.36
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.33
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.32
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	85.07
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	84.97
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	84.9
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.72
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.48
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	84.48
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	84.42
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	84.3
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.15
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	84.04
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	84.0
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	83.99
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	83.6
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	83.47
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	83.3
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	83.17
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	83.15
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.96
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	82.74
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	82.7
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	82.52
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	82.41
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	82.34
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	82.27
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.9
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	81.77
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	81.74
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	81.72
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	81.63
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	81.54
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	81.41
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	81.14
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	80.63
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	80.46
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	80.45
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	80.44
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	80.24
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	80.09

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.94  E-value=2.3e-26  Score=192.48  Aligned_cols=165  Identities=24%  Similarity=0.350  Sum_probs=132.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH----------HHHHhCCcEEEcCCeEEEEE
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE----------QLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~----------~~l~~~gV~~~~~~~v~~i~  140 (352)
                      ..+|+|||||++|+|+|..|+++|.+++++..+++.+.....+.+...+.          +.+...+|+++++..++++.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~   82 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   82 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence            35699999999999999999999988887766555443322222222221          22345689999999999997


Q ss_pred             ecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch-----hhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccC
Q 018652          141 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-----PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY  215 (352)
Q Consensus       141 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-----~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~  215 (352)
                      ..  ..  .+.+++|+++++|.+|+++|..|++.     +....++..+ ++|.||+++||+.|+|||+|||+..+.+..
T Consensus        83 ~~--~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~-~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~  157 (183)
T d1d7ya1          83 PQ--AH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLS  157 (183)
T ss_dssp             TT--TT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS-SSEECCTTCBCSSTTEEECGGGEEEECTTT
T ss_pred             cc--cc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeC-CcEEeccceeccccccchhhhhhccceeeC
Confidence            43  22  56789999999999999999999753     4456677665 679999999999999999999999988888


Q ss_pred             CcccccccHHHHHHHHHHHHHHHhc
Q 018652          216 DRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       216 ~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      |...++++|++|.+||+.+|+||+.
T Consensus       158 g~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         158 GRFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             CSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             CceechhHHHHHHHHHHHHHHHHcC
Confidence            8888889999999999999999983

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=4.3e-24  Score=178.31  Aligned_cols=166  Identities=27%  Similarity=0.431  Sum_probs=133.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc--------------CHHHHHHHHHHHHhCCcEEEcCCe
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF--------------TPSLAQRYEQLYQQNGVKFVKGAS  135 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~--------------~~~~~~~l~~~l~~~gV~~~~~~~  135 (352)
                      ..++|+|||||++|+|+|..|+++|.+++++...+.......              ...............++.+..+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            467999999999999999999999999888776553321111              111222234556778889998888


Q ss_pred             EEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC---CchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCC
Q 018652          136 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP---TVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL  212 (352)
Q Consensus       136 v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p---~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~  212 (352)
                      +..++.. ..   .+.+.++.++++|.+++++|.+|   +..+++..++..+ +++.||++|||+.|+|||+|||+..+.
T Consensus        82 ~~~~~~~-~~---~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~-~~i~Vd~~~~ts~~~vya~GD~~~~~~  156 (185)
T d1q1ra1          82 VTAINRD-RQ---QVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHS  156 (185)
T ss_dssp             EEEEETT-TT---EEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEE
T ss_pred             eeeeccc-cc---EEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCcccc-CccccCCccccchhhhhcchhhhcccc
Confidence            8888632 22   56788889999999999999876   5566777777765 789999999999999999999999988


Q ss_pred             ccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          213 KMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       213 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ...+.+.+.++|++|.+||+.+|+||+|
T Consensus       157 ~~~~~~~~~~~a~~A~~~g~~aa~~i~G  184 (185)
T d1q1ra1         157 QLYDRWVRIESVPNALEQARKIAAILCG  184 (185)
T ss_dssp             TTTTEEEECCSHHHHHHHHHHHHHHHTT
T ss_pred             ccCCcccchhhHHHHHHHHHHHHHHccC
Confidence            8888888889999999999999999986

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.91  E-value=1.1e-23  Score=163.38  Aligned_cols=121  Identities=31%  Similarity=0.530  Sum_probs=112.5

Q ss_pred             CCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHH
Q 018652           41 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE  120 (352)
Q Consensus        41 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~  120 (352)
                      +|++||.+.+ ++++++++|++++.+.+..+++++|||||++|+|+|..|+++|.+||+++++++++++.+++++++.++
T Consensus         1 iP~ipG~~~~-v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~   79 (121)
T d1d7ya2           1 LPTLQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVA   79 (121)
T ss_dssp             CGGGTTCSSC-EEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHH
T ss_pred             CccCCCCCCC-EEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHH
Confidence            3667887765 999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             HHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652          121 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG  168 (352)
Q Consensus       121 ~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  168 (352)
                      +.++++||++++++.++++..+      .+.++||++++||.||+|+|
T Consensus        80 ~~l~~~GV~i~~~~~v~~~~~~------~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          80 RYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHTTTCEEEESCCEEEEETT------EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHCCcEEEeCCEEEEEeCC------EEEECCCCEEECCEEEEeeC
Confidence            9999999999999999998743      57889999999999999998

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.91  E-value=1e-23  Score=178.40  Aligned_cols=164  Identities=20%  Similarity=0.324  Sum_probs=125.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccccccCHH--------------HHHHHHHHHHhCCcEEEcCCeE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPS--------------LAQRYEQLYQQNGVKFVKGASI  136 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~~~~~~~--------------~~~~l~~~l~~~gV~~~~~~~v  136 (352)
                      ||+|||||++|+|+|..|++++  .+|+++++++.+.  ..++.              +.....+.++++||++++++.|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V   79 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS--FLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI   79 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS--BCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc--ccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence            6999999999999999999874  5789999876541  11111              1122346788999999999999


Q ss_pred             EEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCC--------CchhhhhcCCc-ccCCcEEeCCCCCCCCCCEEEec
Q 018652          137 KNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKP--------TVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIG  205 (352)
Q Consensus       137 ~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p--------~~~~~~~~gl~-~~~g~i~vd~~~~t~~~~Iya~G  205 (352)
                      ++++.. +..+..-.+.+|+  .+++|.+|+++|..|        ++.+++. ++. .++|+|.||+++||+.|+|||+|
T Consensus        80 ~~i~~~-~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~-~~~~~~~G~i~vd~~~~T~~~~IyA~G  157 (198)
T d1nhpa1          80 TAIQPK-EHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFAVG  157 (198)
T ss_dssp             EEEETT-TTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred             eeEeec-cccceeeecccccccccccceeeEeecceeecccccccccccccc-cceeccCCceecCCcccccccceEEec
Confidence            999854 3333222345554  578999999998764        4555555 344 34788999999999999999999


Q ss_pred             cccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          206 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       206 D~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ||+..+....+....++++..|.++|+.+|+||.+
T Consensus       158 D~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~  192 (198)
T d1nhpa1         158 DATLIKYNPADTEVNIALATNARKQGRFAVKNLEE  192 (198)
T ss_dssp             GGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSS
T ss_pred             ceeecccccCCCcccccHHHHHHHHHHHHHHhhCC
Confidence            99998766666666677899999999999999974

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=1.4e-23  Score=172.57  Aligned_cols=153  Identities=26%  Similarity=0.392  Sum_probs=121.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHH-------------HHHHHHHhCCcEEEcCCeEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ-------------RYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~-------------~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      .||+|||||++|+|+|..|++ +.+||++++.+.+..  ..+.+..             ...+.+++.++++++++.++.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~   77 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   77 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccc
Confidence            479999999999999999976 679999998764321  2222222             224567788999999999999


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcc
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT  218 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~  218 (352)
                      ++..  ..   +.+.++++++||.+++++|..|+ .+++..+++.+ +++.||+++||+.|+|||+|||+..+...    
T Consensus        78 i~~~--~~---~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~----  146 (167)
T d1xhca1          78 IDRG--RK---VVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII----  146 (167)
T ss_dssp             EETT--TT---EEEESSCEEECSEEEECCCEECC-HHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC----
T ss_pred             cccc--cc---cccccccccccceeEEEEEecCC-chhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE----
Confidence            9743  22   34567778999999999999775 78888899887 46999999999999999999999876543    


Q ss_pred             cccccHHHHHHHHHHHHHHHhc
Q 018652          219 ARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       219 ~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                        ...+..|++||+.+|++|++
T Consensus       147 --~~~~~~a~~~a~~~a~~i~G  166 (167)
T d1xhca1         147 --AGTAKAAMEQARVLADILKG  166 (167)
T ss_dssp             --CCSHHHHHHHHHHHHHHHTT
T ss_pred             --EChHHHHHHHHHHHHHHcCC
Confidence              33667799999999999985

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4e-24  Score=183.06  Aligned_cols=164  Identities=27%  Similarity=0.412  Sum_probs=126.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCcc------ccccc---------------------------CHH--
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL------LQRLF---------------------------TPS--  114 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~~------~~~~~---------------------------~~~--  114 (352)
                      .+++|||||++|+++|..|++++.  +|+++.+.+.+      ++..+                           +++  
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   84 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence            468999999999999999998765  58998765432      10000                           000  


Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC-CchhhhhcCCccc--CCcEEeC
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP-TVSPFERVGLNSS--VGGIQVD  191 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p-~~~~~~~~gl~~~--~g~i~vd  191 (352)
                      ........+++.||+++++++|++|+..+ .   .|.+++|++++||.+|+|+|..| ++++....+++.+  .++|.||
T Consensus        85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~~-~---~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd  160 (213)
T d1m6ia1          85 VSAQDLPHIENGGVAVLTGKKVVQLDVRD-N---MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVN  160 (213)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEGGG-T---EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECC
T ss_pred             hhhhhHHHHHHCCeEEEeCCEEEEeeccC-c---eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhh
Confidence            01111233567899999999999997542 2   67899999999999999999765 4456677777753  4789999


Q ss_pred             CCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          192 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       192 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      ++|||+ |+|||+|||+.++....+. .++++|++|+.||+.+|+||++.
T Consensus       161 ~~l~~~-~~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~  208 (213)
T d1m6ia1         161 AELQAR-SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGA  208 (213)
T ss_dssp             TTCEEE-TTEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSC
T ss_pred             HhcCcC-CceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCC
Confidence            999998 9999999999988766665 46889999999999999999963

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=4.3e-22  Score=156.99  Aligned_cols=120  Identities=33%  Similarity=0.617  Sum_probs=112.4

Q ss_pred             CCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCc
Q 018652           49 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  128 (352)
Q Consensus        49 ~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV  128 (352)
                      .++++++++++|+..+++.+..+++++|||||++|+|+|..|+++|.+||++++.++++++.+++.+++.+++.++++||
T Consensus        13 ~~~v~~lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV   92 (133)
T d1q1ra2          13 ANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGV   92 (133)
T ss_dssp             STTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTC
T ss_pred             cCCeeEeCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccccc
Confidence            57899999999999999998899999999999999999999999999999999999999988999999999999999999


Q ss_pred             EEEcCCeEEEEEecC-CCcEEEEEcCCCCEEEcCEEEEccC
Q 018652          129 KFVKGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIG  168 (352)
Q Consensus       129 ~~~~~~~v~~i~~~~-~~~~~~v~~~~g~~i~~D~vi~a~G  168 (352)
                      ++++++.+++++... ++.+..+.+++|+++++|.||+|+|
T Consensus        93 ~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          93 DIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999998653 4566779999999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.86  E-value=3.3e-21  Score=149.79  Aligned_cols=121  Identities=26%  Similarity=0.350  Sum_probs=108.4

Q ss_pred             CCCCCCCcEEEecCHHHHHHHHHhhc--CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHH
Q 018652           44 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ  121 (352)
Q Consensus        44 ~~g~~~~~v~~~~~~~~~~~~~~~~~--~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~  121 (352)
                      +||.+++|++++++.+|+.++++.+.  .+++++|||||++|+|+|..|+++|.+||++++.++++++.+++++++.+++
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            46888999999999999999988764  4679999999999999999999999999999999999998899999999999


Q ss_pred             HHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652          122 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  167 (352)
Q Consensus       122 ~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  167 (352)
                      .++++||++++++.+++++++  +.+..+ +.+|++++||.||+|+
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~~--~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEECS--SBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEcC--CCEEEE-EeCCCEEECCEEEEEC
Confidence            999999999999999999853  444334 5788899999999984

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.83  E-value=2e-20  Score=145.15  Aligned_cols=120  Identities=23%  Similarity=0.421  Sum_probs=106.6

Q ss_pred             CCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHH
Q 018652           38 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ  117 (352)
Q Consensus        38 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~  117 (352)
                      |+ .|++||  .+.+++++++.|++.+.+.+..+++++|||||++|+|+|..|+++|.+||++++++++++  +++++++
T Consensus         2 ~r-~p~ipG--~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~~~   76 (122)
T d1xhca2           2 AR-EPQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSN   76 (122)
T ss_dssp             EC-CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHH
T ss_pred             CC-CcCCCC--ccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHHHH
Confidence            44 366777  357899999999999999888899999999999999999999999999999999998885  8999999


Q ss_pred             HHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          118 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       118 ~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                      .+.+.|+++||++++++.+.+++.+      .+ +.+++.+++|.||+|+|.
T Consensus        77 ~~~~~l~~~GV~~~~~~~v~~~~~~------~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          77 MIKDMLEETGVKFFLNSELLEANEE------GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHTTEEEECSCCEEEECSS------EE-EETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHCCcEEEeCCEEEEEeCC------EE-EeCCCEEECCEEEEEEEe
Confidence            9999999999999999999999642      23 457778999999999995

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.6e-20  Score=144.26  Aligned_cols=118  Identities=24%  Similarity=0.471  Sum_probs=107.6

Q ss_pred             CcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH----hCCCcEEEEecCCcccccccCHHHHHHHHHHHHh
Q 018652           50 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ  125 (352)
Q Consensus        50 ~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~----~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~  125 (352)
                      +.++++++++|+.++.+.+...++++|||||++|+|+|..|+    +.|.+|++++++++++++.+++++++.+.+.+++
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~   95 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR   95 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHT
T ss_pred             CcEEEEcCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHh
Confidence            468899999999999998889999999999999999999995    4689999999999999888999999999999999


Q ss_pred             CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          126 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       126 ~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                      +||++++++.|++++.+ ++. ..+.+++|++++||.||+|+|.
T Consensus        96 ~GV~~~~~~~V~~i~~~-~~~-~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          96 EGVKVMPNAIVQSVGVS-SGK-LLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             TTCEEECSCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECCCE
T ss_pred             CCcEEEeCCEEEEEEec-CCE-EEEEECCCCEEECCEEEEeecC
Confidence            99999999999999864 333 3689999999999999999994

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=9e-20  Score=140.11  Aligned_cols=105  Identities=26%  Similarity=0.443  Sum_probs=94.2

Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           62 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        62 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      +.+......+++++|||||++|+|+|..|+++|.+||++++++++++ .+++++++.+.+.|+++||++++++.++++.+
T Consensus        12 ~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~-~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~   90 (116)
T d1gesa2          12 DGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-SFDPMISETLVEVMNAEGPQLHTNAIPKAVVK   90 (116)
T ss_dssp             HHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHSCEEECSCCEEEEEE
T ss_pred             HHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh-hcchhhHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            34444455689999999999999999999999999999999999997 48999999999999999999999999999987


Q ss_pred             cCCCcEEEEEcCCCCEEEcCEEEEccC
Q 018652          142 GSDGRVAAVKLEDGSTIDADTIVIGIG  168 (352)
Q Consensus       142 ~~~~~~~~v~~~~g~~i~~D~vi~a~G  168 (352)
                      ++++.+ .+.+++|+++++|.||+|+|
T Consensus        91 ~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          91 NTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             CTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             cCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            666554 68899999999999999998

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=2.3e-19  Score=153.61  Aligned_cols=162  Identities=28%  Similarity=0.377  Sum_probs=116.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc------------------------------cc----ccccC-----
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------------------------LL----QRLFT-----  112 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~------------------------------~~----~~~~~-----  112 (352)
                      ..++|||+|+.|+++|..+++.|.+|+++++...                              ..    ...+.     
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            4689999999999999999999999999986531                              00    00000     


Q ss_pred             -------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc--------CCCCCchh--
Q 018652          113 -------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI--------GAKPTVSP--  175 (352)
Q Consensus       113 -------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~--------G~~p~~~~--  175 (352)
                             ..+...+...++..+|+++.+.  ..+..  ..........++..+.++.+|+++        |.+||++.  
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~--a~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~  159 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGE--AYFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG  159 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESE--EEEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccE--EEEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence                   0122334456677899998774  23332  222222333444578999999985        88888875  


Q ss_pred             hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCC
Q 018652          176 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDY  248 (352)
Q Consensus       176 ~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~  248 (352)
                      ++++|++.+ +|+|.||+++|||.|+|||+|||+..+.          .+..|..+|+.||++|++. +.+++|
T Consensus       160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------~~~~A~~~g~~aa~~i~g~-~~~~dy  222 (223)
T d1ebda1         160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LAHKASYEGKVAAEAIAGH-PSAVDY  222 (223)
T ss_dssp             TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTSC-CCCCCC
T ss_pred             hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCC-CCCCCC
Confidence            578899876 6889999999999999999999987653          3445999999999999964 334433

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.79  E-value=6.5e-19  Score=154.96  Aligned_cols=154  Identities=19%  Similarity=0.292  Sum_probs=107.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-------------------------------------cC-
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FT-  112 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-------------------------------------~~-  112 (352)
                      ...++|||+|+.|+++|..++++|.+|+++++.+.+...+                                     .. 
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  121 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGI  121 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccH
Confidence            3469999999999999999999999999999876541100                                     00 


Q ss_pred             HHHHHH------------HHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhh----
Q 018652          113 PSLAQR------------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF----  176 (352)
Q Consensus       113 ~~~~~~------------l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~----  176 (352)
                      ......            ..+.+...++....+....-+.   ..   .+. .+|++++||.+++|+|.+|+++.+    
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d---~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~  194 (261)
T d1mo9a1         122 KEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID---NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQP  194 (261)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE---TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEE
T ss_pred             HHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEee---ec---ccc-cccceEeeeeeeeccCCCCCcCcccccc
Confidence            000000            0112233344433333322222   11   222 367789999999999999986533    


Q ss_pred             ------hhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          177 ------ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       177 ------~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                            +.+|++.+ +|+|.||++||||.|+|||+|||+..+.          .+..|..+|+.||.||++.
T Consensus       195 ~~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~----------l~~~A~~~G~~aa~~i~G~  256 (261)
T d1mo9a1         195 RSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGE  256 (261)
T ss_dssp             CCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHHHHCCC
Confidence                  44678876 6789999999999999999999987653          3445999999999999964

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.78  E-value=1.2e-18  Score=149.03  Aligned_cols=158  Identities=27%  Similarity=0.443  Sum_probs=113.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc------------------------------------ccC--
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFT--  112 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~------------------------------------~~~--  112 (352)
                      ...|+|||+|+.|+++|..++++|.+|+++++.+.+-..                                    ...  
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~   82 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA   82 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHH
Confidence            357999999999999999999999999999986543100                                    000  


Q ss_pred             ----------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccC-----CCCCchh--
Q 018652          113 ----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG-----AKPTVSP--  175 (352)
Q Consensus       113 ----------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G-----~~p~~~~--  175 (352)
                                ..+...+...+++.+|+++.... .... . ..........+...+.+|.||+|||     +.|+++.  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~-~-~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~  159 (221)
T d1dxla1          83 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFVS-P-SEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLN  159 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCE-EEEE-T-TEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhcCCeEEEEecc-cccc-c-cccccccccccccccccceEEEeECCCccCccccCCCCC
Confidence                      11233455566778899886542 2221 1 1111111223345789999999998     4677764  


Q ss_pred             hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          176 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       176 ~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                      ++++|++.+ +|+|.||++++||+|+|||+|||+..+.          .+..|..+|+.+|++|++.
T Consensus       160 l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~----------l~~~A~~~g~~aa~~i~g~  216 (221)
T d1dxla1         160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGK  216 (221)
T ss_dssp             CTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTS
T ss_pred             hHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence            578899876 6889999999999999999999987653          3445899999999999864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.78  E-value=1.2e-18  Score=133.76  Aligned_cols=98  Identities=24%  Similarity=0.432  Sum_probs=89.0

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcE
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV  147 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~  147 (352)
                      +..+++++|||||++|+|+|..|+++|.+||++++++++++ .+++++++.+.+.|+++||++++++.++++++.+++.+
T Consensus        19 l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~   97 (117)
T d1onfa2          19 IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL   97 (117)
T ss_dssp             CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCE
T ss_pred             cCCCCEEEEECCchHHHHHHHHHHhccccceeeehhccccc-cccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeE
Confidence            34589999999999999999999999999999999999996 58999999999999999999999999999987666654


Q ss_pred             EEEEcCCCCEEE-cCEEEEcc
Q 018652          148 AAVKLEDGSTID-ADTIVIGI  167 (352)
Q Consensus       148 ~~v~~~~g~~i~-~D~vi~a~  167 (352)
                       .+++++|+.++ +|.||+|+
T Consensus        98 -~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          98 -SIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             -EEEETTSCEEEEESEEEECC
T ss_pred             -EEEECCCCEEEeCCEEEEeC
Confidence             78899998874 79999984

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.77  E-value=2.9e-18  Score=131.87  Aligned_cols=106  Identities=23%  Similarity=0.399  Sum_probs=92.4

Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHh---CCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           62 DALISSLEKAKKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        62 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~---~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      +.+......+++++|||||++|+|+|..|.+   .|.+|+++++++++++ .+++++++.+++.++++||++++++.+++
T Consensus         9 ~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~GI~v~~~~~v~~   87 (117)
T d1feca2           9 NEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-GFDSELRKQLTEQLRANGINVRTHENPAK   87 (117)
T ss_dssp             HHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCCEEE
T ss_pred             HHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccc-cccchhhHHHHHHHhhCcEEEEcCCEEEE
Confidence            3344444568999999999999999987665   4889999999999997 58999999999999999999999999999


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCC
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGA  169 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  169 (352)
                      |++.+++. ..+.+++|++++||.||+|+|+
T Consensus        88 i~~~~~g~-~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          88 VTKNADGT-RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEECTTSC-EEEEETTSCEEEESEEEECSCE
T ss_pred             EEECCCCE-EEEEECCCCEEEcCEEEEecCC
Confidence            98765554 4789999999999999999995

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=4.9e-18  Score=131.35  Aligned_cols=105  Identities=17%  Similarity=0.365  Sum_probs=90.8

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           61 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        61 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      ++.+.+....+++++|||||++|+|+|..|+++|.+||++++++++++. +++++++.+++.|+++||++++++++++++
T Consensus        13 s~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~   91 (122)
T d1v59a2          13 STGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAK   91 (122)
T ss_dssp             HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred             hHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEEE
Confidence            3444444456899999999999999999999999999999999999985 899999999999999999999999999998


Q ss_pred             ecCCCcEEEEEcCCC-----CEEEcCEEEEc
Q 018652          141 AGSDGRVAAVKLEDG-----STIDADTIVIG  166 (352)
Q Consensus       141 ~~~~~~~~~v~~~~g-----~~i~~D~vi~a  166 (352)
                      ..+++....+.+.++     +++++|.|++|
T Consensus        92 ~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          92 RNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            877776666665543     37999999986

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.76  E-value=3.4e-18  Score=132.30  Aligned_cols=117  Identities=21%  Similarity=0.316  Sum_probs=96.7

Q ss_pred             CCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhC
Q 018652           47 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN  126 (352)
Q Consensus        47 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~  126 (352)
                      .+.+|++...++.+.   . ...++++++|||||++|+|+|..|+++|.+|+++++++++++ .+++++++.+++.++++
T Consensus         2 ~~~~gv~~~~~~~~~---l-~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-~~d~~~~~~~~~~l~~~   76 (121)
T d1mo9a2           2 VNAKGVFDHATLVEE---L-DYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQ   76 (121)
T ss_dssp             TTSBTEEEHHHHHHH---C-CSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHHHT
T ss_pred             CCCCCEEeHHHHHHH---H-hhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-ccccchhhhhhhhhhcc
Confidence            356788865433221   1 123579999999999999999999999999999999999886 69999999999999999


Q ss_pred             CcEEEcCCeEEEEEecCCCcEEEE---EcCCCCEEEcCEEEEccC
Q 018652          127 GVKFVKGASIKNLEAGSDGRVAAV---KLEDGSTIDADTIVIGIG  168 (352)
Q Consensus       127 gV~~~~~~~v~~i~~~~~~~~~~v---~~~~g~~i~~D~vi~a~G  168 (352)
                      ||++++++.++++++.+++....+   ...++++++||+||+|+|
T Consensus        77 gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          77 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            999999999999998777665443   345567899999999998

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.75  E-value=1.6e-17  Score=127.92  Aligned_cols=107  Identities=17%  Similarity=0.329  Sum_probs=90.4

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           61 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        61 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      ++.+.+....+++++|||||++|||+|..|+++|++||++++++++++ .+++++++.+++.|+++||++++++++++++
T Consensus        12 s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~-~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~   90 (119)
T d3lada2          12 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGARVTGTE   90 (119)
T ss_dssp             HHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCEEEEEE
T ss_pred             hhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC-cccchhHHHHHHHHHhcCceeecCcEEEEEE
Confidence            444555556789999999999999999999999999999999999998 5899999999999999999999999999998


Q ss_pred             ecCCCcEEEEEcCCC-CEEEcCEEEEccC
Q 018652          141 AGSDGRVAAVKLEDG-STIDADTIVIGIG  168 (352)
Q Consensus       141 ~~~~~~~~~v~~~~g-~~i~~D~vi~a~G  168 (352)
                      ..+++........++ ++++||.|++|+|
T Consensus        91 ~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          91 VKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             EeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            765553222322222 5799999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.75  E-value=4.6e-18  Score=130.66  Aligned_cols=105  Identities=24%  Similarity=0.453  Sum_probs=90.5

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCC---CcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEE
Q 018652           61 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK  137 (352)
Q Consensus        61 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g---~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~  137 (352)
                      ++.+......+++++|||||++|+|+|..|.+++   .+||++++++++++ .+++++++.+++.|+++||+++++++++
T Consensus        10 ~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~-~~d~~~~~~l~~~l~~~GV~v~~~~~v~   88 (117)
T d1aoga2          10 SNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-GFDHTLREELTKQLTANGIQILTKENPA   88 (117)
T ss_dssp             HHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEESCCEE
T ss_pred             HHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc-ccchHHHHHHHHHHHhcCcEEEcCCEEE
Confidence            3344444556899999999999999998877654   57999999999997 5899999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652          138 NLEAGSDGRVAAVKLEDGSTIDADTIVIGI  167 (352)
Q Consensus       138 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  167 (352)
                      +++...++.. .+.+++|++++||.||+|+
T Consensus        89 ~ie~~~~~~~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          89 KVELNADGSK-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred             EEEEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence            9987656554 6899999999999999984

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=2.1e-17  Score=142.63  Aligned_cols=160  Identities=24%  Similarity=0.362  Sum_probs=110.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCC---CcEEEEecCCc--------------c---------c---cc----------ccC-
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENH--------------L---------L---QR----------LFT-  112 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g---~~Vtvv~~~~~--------------~---------~---~~----------~~~-  112 (352)
                      +|+|||+|+.|+.+|..+++++   .+|+++++..-              +         +   ..          .++ 
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~   82 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL   82 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence            7999999999999998887655   56899986420              0         0   00          000 


Q ss_pred             H-----------HHHHHHHHHHHhCCcEEEcCCeEEEEEecC--CCcEEEEEcCCCC--EEEcCEEEEccCCCCCchh--
Q 018652          113 P-----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--  175 (352)
Q Consensus       113 ~-----------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~--~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~--  175 (352)
                      +           .....+...++..||+++.+... .+....  ......+...+|+  ++++|.+|+++|.+|....  
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~-~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~  161 (233)
T d1xdia1          83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGE-LIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSG  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-ECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGC
T ss_pred             eeeccccceeeeeeecceehhhcccceeEEECccc-ccccccccccceEEEEecCCceeeeecceeeeecCccccccccc
Confidence            0           11123556678899999877422 111111  1123355666765  6899999999999886421  


Q ss_pred             ---------hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 018652          176 ---------FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT  243 (352)
Q Consensus       176 ---------~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~  243 (352)
                               ++..+++.+ +|+|.||++|||+.|+|||+|||+..+.          ....|..+|+.||.|+++...
T Consensus       162 ~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~~----------l~~~A~~~g~~aa~~~~g~~~  229 (233)
T d1xdia1         162 SVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGV  229 (233)
T ss_dssp             EEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCch----------hHHHHHHHHHHHHHHHcCCCC
Confidence                     345566665 5779999999999999999999987542          334599999999999996543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.74  E-value=2.5e-18  Score=133.37  Aligned_cols=108  Identities=15%  Similarity=0.228  Sum_probs=92.7

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           61 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        61 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      ++.+......+++++|||||++|+|+|..++++|.+||++++++++++ .+++++++.+.+.++++||++++++.+++++
T Consensus        16 s~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~-~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~   94 (125)
T d1ojta2          16 SSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQKQNEYRFDNIMVNTKTVAVE   94 (125)
T ss_dssp             HHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHGGGEEEEECSCEEEEEE
T ss_pred             HHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc-cchhhHHHHHHHHHHHcCcccccCcEEEEEE
Confidence            444455556789999999999999999999999999999999999998 4899999999999999999999999999998


Q ss_pred             ecCCCcEEEEEcCCC--CEEEcCEEEEccCC
Q 018652          141 AGSDGRVAAVKLEDG--STIDADTIVIGIGA  169 (352)
Q Consensus       141 ~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~  169 (352)
                      ..+++....++..+|  +++++|.|++|+|+
T Consensus        95 ~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          95 PKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             EcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            766654444444544  37999999999995

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.74  E-value=1.5e-17  Score=137.25  Aligned_cols=159  Identities=23%  Similarity=0.304  Sum_probs=112.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccccccCHHHH---------HHHHHHHHhCCcEEEcCCeEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA---------QRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~~~~~~~~~---------~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      .+|||+|||||++|+|+|..|++++  .+||++++.+.+......+...         ......+...++.+..+. +..
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~   79 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDS-ATG   79 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCC-EEE
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeee-eEe
Confidence            3799999999999999999999987  4789999888665432222111         111234566788888764 344


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhh--------cCCcccCCcEEeCCC-CC-CCCCCEEEecccc
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER--------VGLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVA  208 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~--------~gl~~~~g~i~vd~~-~~-t~~~~Iya~GD~a  208 (352)
                      +..  ...  .+.+.+++++++|.+|+|+|.+|++.++..        .++..+++++.++.. ++ ++.++||++||++
T Consensus        80 ~~~--~~~--~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~  155 (186)
T d1fcda1          80 IDP--DKK--LVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDAS  155 (186)
T ss_dssp             CCT--TTT--EEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSE
T ss_pred             eee--ccc--eeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEecccc
Confidence            332  222  567788999999999999999999765433        244455667777653 33 5899999999998


Q ss_pred             ccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          209 AFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      .....       ...+..|..||+.+|+||..
T Consensus       156 ~~~~~-------p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         156 IANPM-------PKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             ECTTC-------CSSHHHHHHHHHHHHHHHHH
T ss_pred             ccCCC-------CchHhHHHHHHHHHHHHHHH
Confidence            65321       12566799999999999974

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-17  Score=141.61  Aligned_cols=154  Identities=21%  Similarity=0.390  Sum_probs=108.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc------------------------------c-c---ccccC------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------------------------L-L---QRLFT------  112 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~------------------------------~-~---~~~~~------  112 (352)
                      .++|||+|+.|+++|..+++.|.+|+++++...                              . .   ...++      
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            589999999999999999999999999986521                              0 0   00000      


Q ss_pred             ------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC--------chh--h
Q 018652          113 ------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT--------VSP--F  176 (352)
Q Consensus       113 ------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~--------~~~--~  176 (352)
                            ..+.......+++.||+++.+.-.  +. . .... .+. ....++.++.+++++|.+|.        ++.  |
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~--~~-~-~~~~-~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L  158 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAA--FT-S-DPKP-TIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSL  158 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCE--EC-S-CSSC-EEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeee--ec-c-ccce-eee-eeccccccceeEEecCccccCCCccccCCCCcCc
Confidence                  011223445678899999876522  11 1 1111 122 23357889999999996554        332  6


Q ss_pred             hhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 018652          177 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  242 (352)
Q Consensus       177 ~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  242 (352)
                      ++.|++.+ +|+|.||+++|||.|+|||+|||+..+.          ....|..+|+.+|++|.+..
T Consensus       159 ~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------l~~~A~~~G~~aa~~~~~~~  215 (221)
T d3grsa1         159 NKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYK  215 (221)
T ss_dssp             GGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC----------CHHHHHHHHHHHHHHHHSCC
T ss_pred             hhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcC----------cHHHHHHHHHHHHHHHcCCC
Confidence            77788875 6789999999999999999999987542          34459999999999999643

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=8.6e-17  Score=138.69  Aligned_cols=157  Identities=21%  Similarity=0.285  Sum_probs=112.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------c-
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------R-  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------~-  109 (352)
                      .++|||+|+.|+.+|..+++.|.+|.+++..+....                                          . 
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            589999999999999999999999999985421000                                          0 


Q ss_pred             -ccC------------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCCCCch
Q 018652          110 -LFT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       110 -~~~------------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~  174 (352)
                       ..+            ..+...+...+++++|+++.+...  +..   .....+...+++  .+.++.+++++|.+|...
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~~---~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~  159 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FIG---PHKIMATNNKGKEKVYSAERFLIATGERPRYL  159 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EEE---TTEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ecc---ccceecccccccccccccccceeecCCCceeE
Confidence             000            012233455678889999877532  221   122345555554  588999999999998642


Q ss_pred             ----------hhhhcCCccc--CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 018652          175 ----------PFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  242 (352)
Q Consensus       175 ----------~~~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  242 (352)
                                .++..+++.+  .|.|.||++||||+|+|||+|||+..+..         ....|..+|+.+|++|+++.
T Consensus       160 ~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~~---------l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         160 GIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLE---------LTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             SSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSCC---------CHHHHHHHHHHHHHHHHHCC
T ss_pred             EEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCcc---------cHHHHHHHHHHHHHHHcCCC
Confidence                      2345566655  37899999999999999999999865422         33459999999999999755


Q ss_pred             C
Q 018652          243 T  243 (352)
Q Consensus       243 ~  243 (352)
                      +
T Consensus       231 ~  231 (235)
T d1h6va1         231 T  231 (235)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.72  E-value=2.2e-17  Score=127.81  Aligned_cols=106  Identities=21%  Similarity=0.424  Sum_probs=90.4

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           61 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        61 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      ++.+......+++++|||||++|+|+|..|+++|.+||++++++++++ .+++++.+.+.+.|+++||++++++.+.+++
T Consensus        15 s~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~-~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~   93 (123)
T d1dxla2          15 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVD   93 (123)
T ss_dssp             HHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHSSCCEECSEEEEEEE
T ss_pred             HHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc-hhhhcchhhhhhhhhcccceEEcCCceEEEE
Confidence            444555556789999999999999999999999999999999999997 5899999999999999999999999999999


Q ss_pred             ecCCCcEEEEEcCC-C--CEEEcCEEEEcc
Q 018652          141 AGSDGRVAAVKLED-G--STIDADTIVIGI  167 (352)
Q Consensus       141 ~~~~~~~~~v~~~~-g--~~i~~D~vi~a~  167 (352)
                      ..+++....+...+ |  +.++||.|++|.
T Consensus        94 ~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          94 TSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             CSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             EccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            76666544555543 3  358999999873

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.4e-17  Score=128.02  Aligned_cols=106  Identities=23%  Similarity=0.388  Sum_probs=88.6

Q ss_pred             HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe
Q 018652           62 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA  141 (352)
Q Consensus        62 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~  141 (352)
                      +.+...-..+++++|||||++|+|+|..|+++|.+||++++++++++. +++++++.+.+.|+++||+++++++++++++
T Consensus        13 ~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~   91 (125)
T d3grsa2          13 DGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEVKK   91 (125)
T ss_dssp             HHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred             HHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            344443446799999999999999999999999999999999999974 8999999999999999999999999999987


Q ss_pred             cCCCcEE-EEEcCCCC------EEEcCEEEEccC
Q 018652          142 GSDGRVA-AVKLEDGS------TIDADTIVIGIG  168 (352)
Q Consensus       142 ~~~~~~~-~v~~~~g~------~i~~D~vi~a~G  168 (352)
                      .+++... .+...+|+      .+++|.|++|+|
T Consensus        92 ~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          92 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             ETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             cCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            6555322 23334442      478999999987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.72  E-value=2.1e-17  Score=126.99  Aligned_cols=104  Identities=30%  Similarity=0.463  Sum_probs=87.6

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           61 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        61 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      .+.+......+++++|||||++|+|+|..|+++|.+||++++++++++. +++++++.+.+.|+++||++++++.+++++
T Consensus        12 s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~   90 (117)
T d1ebda2          12 STGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGAE   90 (117)
T ss_dssp             HHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             hhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCEEEcCCEEEEEE
Confidence            4455555567899999999999999999999999999999999999974 899999999999999999999999999998


Q ss_pred             ecCCCcEEEEEcCCC--CEEEcCEEEEc
Q 018652          141 AGSDGRVAAVKLEDG--STIDADTIVIG  166 (352)
Q Consensus       141 ~~~~~~~~~v~~~~g--~~i~~D~vi~a  166 (352)
                      ..+++... ....+|  +++++|.|+++
T Consensus        91 ~~~~~~~v-~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          91 EREDGVTV-TYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EETTEEEE-EEEETTEEEEEEESEEEEC
T ss_pred             EcCCEEEE-EEEeCCCEEEEEeEEEEEC
Confidence            76554322 222344  46999999985

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=1.6e-17  Score=127.13  Aligned_cols=101  Identities=22%  Similarity=0.423  Sum_probs=85.0

Q ss_pred             HHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecC
Q 018652           64 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS  143 (352)
Q Consensus        64 ~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~  143 (352)
                      .......+++++|||||++|+|+|..|+++|++||++++.+++++. +++++++.+++.|+++||+++++++|++++.  
T Consensus        14 ~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--   90 (115)
T d1lvla2          14 ALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYEN--   90 (115)
T ss_dssp             HTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEET--
T ss_pred             HhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEcC--
Confidence            3333456799999999999999999999999999999999999985 8999999999999999999999999999962  


Q ss_pred             CCcEEEEE-cCCCCEEEcCEEEEccC
Q 018652          144 DGRVAAVK-LEDGSTIDADTIVIGIG  168 (352)
Q Consensus       144 ~~~~~~v~-~~~g~~i~~D~vi~a~G  168 (352)
                       +...... ..++++++||.|++|+|
T Consensus        91 -~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          91 -GCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             -TEEEEECSSSCCCEECCSCEEECCC
T ss_pred             -CeEEEEEcCCCeEEEEcCEEEEecC
Confidence             2222222 22335799999999998

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=4e-17  Score=139.53  Aligned_cols=153  Identities=23%  Similarity=0.358  Sum_probs=109.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc-----------------------cccc----------c----cC-
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-----------------------LLQR----------L----FT-  112 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~-----------------------~~~~----------~----~~-  112 (352)
                      ...++|||+|+.|+++|..++++|.+|+|++++.-                       .+.+          .    .. 
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence            35799999999999999999999999999986520                       0000          0    00 


Q ss_pred             -----------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCch-------
Q 018652          113 -----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-------  174 (352)
Q Consensus       113 -----------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-------  174 (352)
                                 ..........+.+.+++++.+..  .+...  .   .+ ..++..+++|.+++++|.+|...       
T Consensus        85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~--~~~~~--~---~~-~~~~~~i~a~~viiAtG~~p~~lp~~~~~~  156 (220)
T d1lvla1          85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWA--KVLDG--K---QV-EVDGQRIQCEHLLLATGSSSVELPRRPRTK  156 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCE--EEEET--T---EE-EETTEEEECSEEEECCCEEECCBTEEECCS
T ss_pred             HHHhhhheeEEeeeccchhhhhccCceEEEEeee--cccCc--c---cc-cccceeEeeceeeEcCCCCccccccccccc
Confidence                       01112234556778888887652  22211  1   11 13456899999999999988642       


Q ss_pred             --hhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          175 --PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       175 --~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                        .+...+++.++++|.||+++||+.|+|||+|||+..+.          ....|..+|+.+|++|+++
T Consensus       157 ~~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~~----------l~~~a~~~g~~~a~~i~G~  215 (220)
T d1lvla1         157 GFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRAMAQGEMVAEIIAGK  215 (220)
T ss_dssp             SSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHTTC
T ss_pred             CCcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCccc----------chhhhhhhHHHHHHHHcCC
Confidence              23455666778999999999999999999999997653          3445899999999999864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.69  E-value=3.2e-16  Score=131.04  Aligned_cols=156  Identities=18%  Similarity=0.253  Sum_probs=115.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------------------ccccCHHHHHHHHHHHHhCCcE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------QRLFTPSLAQRYEQLYQQNGVK  129 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------------------~~~~~~~~~~~l~~~l~~~gV~  129 (352)
                      ..++|+|||||++|+++|.++++.|.++.++++.....                    ....++++...+.+++++.|++
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~   83 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   83 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence            35789999999999999999999999999998553210                    1123457777788888899999


Q ss_pred             EEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCC-----CCCchhhhhcCCccc-CCcEEeCC-CCCCCCCCEE
Q 018652          130 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA-----KPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIF  202 (352)
Q Consensus       130 ~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~-----~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Iy  202 (352)
                      +..+ .|.+++..++.  ..+. .+.....+|.+++++|.     .|++.+++. +++.+ +|.|.+|+ .++|+.|+||
T Consensus        84 i~~~-~V~~~~~~~~~--~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~-~veld~~G~i~~~~~~~~Ts~~GV~  158 (192)
T d1vdca1          84 IFTE-TVTKVDFSSKP--FKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVF  158 (192)
T ss_dssp             EECC-CCCEEECSSSS--EEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEE
T ss_pred             eeee-eEEecccccCc--EEec-ccceeeeeeeEEEEeeeeecccCchHHHhcC-ceeecCCCeEEeCCCceEecCCCEE
Confidence            9866 57788754332  3444 34457899999999985     477776654 56655 67899985 8899999999


Q ss_pred             EeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          203 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       203 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      |+|||...+..         ....|...|..||..+.
T Consensus       159 a~GDv~~~~~r---------~~v~A~g~G~~aA~~~~  186 (192)
T d1vdca1         159 AAGDVQDKKYR---------QAITAAGTGCMAALDAE  186 (192)
T ss_dssp             ECGGGGCSSCC---------CHHHHHHHHHHHHHHHH
T ss_pred             EeeecCCcccc---------eEEEEEechHHHHHHHH
Confidence            99999986643         23346677777776553

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=4.5e-16  Score=129.81  Aligned_cols=155  Identities=21%  Similarity=0.278  Sum_probs=112.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc---------------cccccCHHHHHHHHHHHHhCCcEEEcCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------LQRLFTPSLAQRYEQLYQQNGVKFVKGA  134 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~---------------~~~~~~~~~~~~l~~~l~~~gV~~~~~~  134 (352)
                      +.++|+|||||++|++.|.++++.|.+|+++++.+..               .....+.++.+.+...+.+.++++..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            4578999999999999999999999999999865421               011234566777888888999999865 


Q ss_pred             eEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC-----chhhhhcCCcccCCcEEeCC-----CCCCCCCCEEEe
Q 018652          135 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-----VSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAI  204 (352)
Q Consensus       135 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~-----~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~Iya~  204 (352)
                      .|+++...++.  ..+... ...+.++.+++++|..|.     ..+++. .++.++|+|.+|+     .++|++|+|||+
T Consensus        83 ~V~~~~~~~~~--~~v~~~-~~~~~~~~viva~G~~~~~~~~~~~~~~~-~~e~~~g~i~~~~~~~~~~~~T~v~gV~aa  158 (190)
T d1trba1          83 HINKVDLQNRP--FRLNGD-NGEYTCDALIIATGASARYHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAA  158 (190)
T ss_dssp             CEEEEECSSSS--EEEEES-SCEEEEEEEEECCCEEECCEEESCGGGTT-TSCEETTEECCCCSSSSCTTBCSSTTEEEC
T ss_pred             eeEEEecCCCc--EEEEEe-eeeEeeeeeeeecceeeeeecccceeecc-eEecCCcEEEEecCCcccccccccCeEEEe
Confidence            57887754322  344443 457999999999997654     333432 3555678899984     568999999999


Q ss_pred             ccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 018652          205 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL  238 (352)
Q Consensus       205 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i  238 (352)
                      |||+..+..         +.-.|..+|..||.++
T Consensus       159 GDv~~~~~~---------q~i~Aag~G~~AA~~a  183 (190)
T d1trba1         159 GDVMDHIYR---------QAITSAGTGCMAALDA  183 (190)
T ss_dssp             GGGGCSSSC---------CHHHHHHHHHHHHHHH
T ss_pred             EEecCccee---------EEEEEeccHHHHHHHH
Confidence            999875533         3444667777777554

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.68  E-value=2.2e-16  Score=135.69  Aligned_cols=159  Identities=24%  Similarity=0.288  Sum_probs=104.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc-----------------------------------c------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----------------------------------L------  110 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----------------------------------~------  110 (352)
                      -.++|||+|+.|+.+|.++++.|.+|+|+++.+.+-..                                   .      
T Consensus         7 yDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~   86 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDML   86 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHH
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHH
Confidence            46999999999999999999999999999976543100                                   0      


Q ss_pred             ------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEe--------cCCCcEEEEEcCCCCEEEcCEEEEccCC-CCCch-
Q 018652          111 ------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEA--------GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPTVS-  174 (352)
Q Consensus       111 ------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~--------~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~~-  174 (352)
                            ....+...+......++++++.+.....-..        ...... .......+...++-++++.|. .|++. 
T Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  165 (229)
T d1ojta1          87 RAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQ-AAPTGEKKIVAFKNCIIAAGSRAPNGKL  165 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTE-EEEEEEEEEEEEEEEEECCCEEEECGGG
T ss_pred             HHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccccccccc-ccccccccceecceEEEEecccCCcccc
Confidence                  0011122334456677788775442211100        000000 001111124556666666665 45443 


Q ss_pred             -hhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          175 -PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       175 -~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                       .++..|++.+ +|+|.||+++|||+|+|||+|||+..+.          .+..|..+|+.||.+|++.
T Consensus       166 ~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~----------l~~~A~~eG~~Aa~~i~G~  224 (229)
T d1ojta1         166 ISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGH  224 (229)
T ss_dssp             TTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc----------hHHHHHHHHHHHHHHHcCC
Confidence             4688899876 6789999999999999999999987653          3344999999999999964

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.68  E-value=2.8e-17  Score=132.92  Aligned_cols=148  Identities=10%  Similarity=-0.006  Sum_probs=113.2

Q ss_pred             ccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEE--CCChHHHHHHHHHHhCCCcEEEEecCCcccccc
Q 018652           33 ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV--GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL  110 (352)
Q Consensus        33 AtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVv--GgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~  110 (352)
                      |||+.|..++++||.+.++.+.+ +.++..  ......++.++|+  |||++|+|+|..|+++|++||++++.+++++. 
T Consensus         4 atG~~~~~~~pipG~~~~~~~v~-t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-   79 (156)
T d1djqa2           4 TDGTNCLTHDPIPGADASLPDQL-TPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-   79 (156)
T ss_dssp             SSCCCTTTSSCCTTCCTTSTTEE-CHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-
T ss_pred             CCCCCCCCCCCCCCccCCCCEEE-CHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-
Confidence            89999876557788777665555 444442  2223455666666  99999999999999999999999999988875 


Q ss_pred             cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCcEEe
Q 018652          111 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV  190 (352)
Q Consensus       111 ~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~i~v  190 (352)
                      +++.....+.+.|++.||++++++.+.+|+++      .+.+.+.....++.++.++|..|+.....+.+++.| +.+.+
T Consensus        80 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~------~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D-~vilv  152 (156)
T d1djqa2          80 HFTLEYPNMMRRLHELHVEELGDHFCSRIEPG------RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFD-SLVLV  152 (156)
T ss_dssp             HHTTCHHHHHHHHHHTTCEEEETEEEEEEETT------EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECS-EEEEE
T ss_pred             cchhHHHHHHHHHhhccceEEeccEEEEecCc------ceEEEeeeccccceeeeeeEEEecccCCccCcEecc-eEEEE
Confidence            67777888999999999999999999999843      334444444567888999999998887777777766 34555


Q ss_pred             C
Q 018652          191 D  191 (352)
Q Consensus       191 d  191 (352)
                      +
T Consensus       153 t  153 (156)
T d1djqa2         153 T  153 (156)
T ss_dssp             S
T ss_pred             e
Confidence            4

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.68  E-value=1.4e-16  Score=136.31  Aligned_cols=157  Identities=24%  Similarity=0.331  Sum_probs=111.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc---------------------------------cc-------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------RL-------  110 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~---------------------------------~~-------  110 (352)
                      .-.++|||+|+.|+.+|.++++.|.+|.++++......                                 ..       
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~   82 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGE   82 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCc
Confidence            34699999999999999999999999999986421100                                 00       


Q ss_pred             --c------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCch
Q 018652          111 --F------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS  174 (352)
Q Consensus       111 --~------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  174 (352)
                        +            ...+...+...++..||+++.+......    ... ......++  ..+.++.+++++|.+|...
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~----~~~-~~~~~~~~~~~~~~~~~~i~atG~~~~~~  157 (229)
T d3lada1          83 VAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLA----GKK-VEVTAADGSSQVLDTENVILASGSKPVEI  157 (229)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECS----TTC-EEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred             ceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccc----cce-eeccccCccceeeecccccccCCcccccc
Confidence              0            0012233455667789999876432211    111 12333333  3678999999999887543


Q ss_pred             ---------hhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 018652          175 ---------PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  242 (352)
Q Consensus       175 ---------~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  242 (352)
                               +++++|+..+ +|+|.||++++|+.|+|||+|||...+.          ....|..+|+.+|++|++..
T Consensus       158 ~~~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~----------l~~~A~~~G~~aa~~i~g~~  225 (229)
T d3lada1         158 PRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHK  225 (229)
T ss_dssp             TEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHH----------HHHHHHHHHHHHHHHHcCCC
Confidence                     4567788876 6889999999999999999999987543          33458999999999999653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=9.1e-16  Score=118.32  Aligned_cols=106  Identities=25%  Similarity=0.401  Sum_probs=85.2

Q ss_pred             HHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           61 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        61 ~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      ++.+...-..+++++|||||++|+|+|..|+++|.+||+++++ ++++ .+++++++.+.+.|+++||++++++.+++++
T Consensus        10 sd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~-~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~   87 (122)
T d1h6va2          10 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR-GFDQDMANKIGEHMEEHGIKFIRQFVPTKIE   87 (122)
T ss_dssp             HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSST-TSCHHHHHHHHHHHHHTTEEEEESCEEEEEE
T ss_pred             chHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhc-cCCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence            4455555567899999999999999999999999999999875 6776 5899999999999999999999999999997


Q ss_pred             ecCCC--cEEEEEcCC--C-C--EEEcCEEEEccC
Q 018652          141 AGSDG--RVAAVKLED--G-S--TIDADTIVIGIG  168 (352)
Q Consensus       141 ~~~~~--~~~~v~~~~--g-~--~i~~D~vi~a~G  168 (352)
                      ..+++  ....+.+.+  + +  .++||.|++|+|
T Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          88 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            54332  222333332  2 2  467999999998

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=2.8e-14  Score=117.76  Aligned_cols=140  Identities=20%  Similarity=0.329  Sum_probs=107.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC--cc-----------cccccCHHHHHHHHHHHHhCCcEEEcCCeEEEE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL  139 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~--~~-----------~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i  139 (352)
                      .|+|||||++|+++|..++++|.+|++++++.  .+           .+...++.+...+....++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            58999999999999999999999999998642  11           111123666777777788889999988888877


Q ss_pred             EecCCC-cEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCC
Q 018652          140 EAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL  212 (352)
Q Consensus       140 ~~~~~~-~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~  212 (352)
                      .+.... ........+++.+.++.++.++|..++.......++... .|.+.+|...+|+.|+||++|||...+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~  157 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY  157 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc
Confidence            654322 233445566778999999999998766555555555544 6789999999999999999999998664

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.5e-14  Score=123.95  Aligned_cols=158  Identities=27%  Similarity=0.460  Sum_probs=105.5

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-----c-------CH------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----F-------TP------------------------  113 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----~-------~~------------------------  113 (352)
                      +.-.|+|||+|+.|+.+|..+++.|.+|+++++.+.+-...     .       ..                        
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~   83 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKIN   83 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEEC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecc
Confidence            34579999999999999999999999999999764431000     0       00                        


Q ss_pred             -------------HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--------CEEEcCEEEE-------
Q 018652          114 -------------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--------STIDADTIVI-------  165 (352)
Q Consensus       114 -------------~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--------~~i~~D~vi~-------  165 (352)
                                   .+......+.++.+|+++.+.-  ++.   +.....+....+        ..++++.+++       
T Consensus        84 ~~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~  158 (233)
T d1v59a1          84 VANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT  158 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC
T ss_pred             hhhhhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe---cCCCcEEEecccccceeeeeeeccCCeEEEecccccc
Confidence                         1111223344555666665421  221   111112222222        1344444444       


Q ss_pred             -ccCCCCCchh--hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 018652          166 -GIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA  241 (352)
Q Consensus       166 -a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~  241 (352)
                       ++|.+|+++.  ++.+|++.+ +|+|.||++++|+.|+|||+|||...+.          ....|..+|..+|++|+++
T Consensus       159 ~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~----------l~~~a~~~G~~aa~~i~~~  228 (233)
T d1v59a1         159 PFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTG  228 (233)
T ss_dssp             CCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHS
T ss_pred             eecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHH----------HHHHHHHHHHHHHHHHccC
Confidence             8899999874  578888876 6789999999999999999999987653          3345899999999999865


Q ss_pred             C
Q 018652          242 Q  242 (352)
Q Consensus       242 ~  242 (352)
                      .
T Consensus       229 ~  229 (233)
T d1v59a1         229 H  229 (233)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.50  E-value=4.9e-14  Score=121.50  Aligned_cols=78  Identities=24%  Similarity=0.430  Sum_probs=64.2

Q ss_pred             CEEEcCEEEEccCCCCCch----------hhhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccH
Q 018652          156 STIDADTIVIGIGAKPTVS----------PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  224 (352)
Q Consensus       156 ~~i~~D~vi~a~G~~p~~~----------~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~  224 (352)
                      +.+++|.+++++|.+|...          -|+.++++.+ +|.|.||+++|||.|+|||+|||+..+.          ..
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~----------~~  217 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM----------LT  217 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCC----------CH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCcc----------ch
Confidence            4689999999999988643          1567788876 5789999999999999999999987653          33


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 018652          225 DHARQSAQHCIKALLSAQT  243 (352)
Q Consensus       225 ~~A~~~g~~aa~~i~~~~~  243 (352)
                      ..|..+|+.+|+++++...
T Consensus       218 ~~A~~eg~~aa~~~~~~~~  236 (240)
T d1feca1         218 PVAINEGAAFVDTVFANKP  236 (240)
T ss_dssp             HHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHhCCCC
Confidence            4599999999999997543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=4.2e-13  Score=113.66  Aligned_cols=151  Identities=25%  Similarity=0.359  Sum_probs=108.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------c------------ccC----
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------R------------LFT----  112 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------~------------~~~----  112 (352)
                      .++|||+|+.|+++|..++++|.+|++++++. +-.                        .            .++    
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            58999999999999999999999999998752 100                        0            000    


Q ss_pred             --------HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh--------h
Q 018652          113 --------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--------F  176 (352)
Q Consensus       113 --------~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--------~  176 (352)
                              ......++..+++.||++..+.......        .....+++.+.++.+++++|.+|..+.        +
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~--------~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l  154 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--------KTLEVNGETITADHILIATGGRPSHPREPANDNINL  154 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--------TEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee--------eeecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence                    0122334556778899988765433221        112245678999999999998875431        3


Q ss_pred             hhcCCccc-CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 018652          177 ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ  242 (352)
Q Consensus       177 ~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~  242 (352)
                      ...++..+ ++.+.+|+.++|+.|+||++||+....          +..+.+..+|..++.++.+..
T Consensus       155 ~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~  211 (217)
T d1gesa1         155 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNK  211 (217)
T ss_dssp             HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCC
Confidence            44566654 678999999999999999999998753          244558889999999998654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.46  E-value=3.4e-13  Score=115.58  Aligned_cols=77  Identities=25%  Similarity=0.434  Sum_probs=61.2

Q ss_pred             CEEEcCEEEEccCCCCCc--------hh--hhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHH
Q 018652          156 STIDADTIVIGIGAKPTV--------SP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD  225 (352)
Q Consensus       156 ~~i~~D~vi~a~G~~p~~--------~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~  225 (352)
                      +.++++.+++.++.+|..        ..  +...++..++|+|.||++|||+.|+|||+|||...+.          ...
T Consensus       148 ~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~~----------l~~  217 (238)
T d1aoga1         148 ERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVM----------LTP  217 (238)
T ss_dssp             EEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSCC----------CHH
T ss_pred             ccccccceeeecccccccccccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCcc----------chh
Confidence            357888888877766543        22  3557888888999999999999999999999987643          344


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 018652          226 HARQSAQHCIKALLSAQ  242 (352)
Q Consensus       226 ~A~~~g~~aa~~i~~~~  242 (352)
                      .|..+|+.+|++|+++.
T Consensus       218 ~A~~eg~~aa~~i~g~~  234 (238)
T d1aoga1         218 VAINEAAALVDTVFGTT  234 (238)
T ss_dssp             HHHHHHHHHHHHHHSSS
T ss_pred             hHHHHHHHHHHHHcCCC
Confidence            59999999999999754

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.41  E-value=1.3e-12  Score=96.56  Aligned_cols=89  Identities=20%  Similarity=0.374  Sum_probs=75.5

Q ss_pred             CCCCCCeeeeeccCcCCCCcceeeEEeecCcc--cEEEEcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHhCC
Q 018652          245 TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQ  321 (352)
Q Consensus       245 ~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~  321 (352)
                      ++..+|||||+||+.+       +|++|....  +++.+|+.+ .+|..||+++|+++|++. +|.++++..++++|..+
T Consensus         3 ~~~~vP~FWSdQ~d~~-------lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~-vn~~~~~~~~r~li~~~   74 (103)
T d1q1ra3           3 RDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VNRPVEFNQSKQIITDR   74 (103)
T ss_dssp             CCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCcEeeecCCCe-------eEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEE-eCCHHHHHHHHHHHHCC
Confidence            5677999999999864       999998654  677788775 689999999999999996 89999999999999999


Q ss_pred             CCCChhhhcCCCc-hHHHHHH
Q 018652          322 PFVDKAKLQQASS-VEEALEI  341 (352)
Q Consensus       322 ~~~~~~~~~~~~~-~~e~~~~  341 (352)
                      ..++++.|.|+.. +.+.++.
T Consensus        75 ~~~~~~~L~D~~~~Lk~Ll~~   95 (103)
T d1q1ra3          75 LPVEPNLLGDESVPLKEIIAA   95 (103)
T ss_dssp             CCCCHHHHTCTTSCHHHHHHH
T ss_pred             CCcCHHHhcCCCCCHHHHHHh
Confidence            9999999988876 5444443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.2e-12  Score=105.68  Aligned_cols=122  Identities=20%  Similarity=0.222  Sum_probs=88.1

Q ss_pred             CCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCc---------------------
Q 018652           38 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD---------------------   96 (352)
Q Consensus        38 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~---------------------   96 (352)
                      |+ .|++||.+.+++++.     .+.+......+++|+|||||++|+++|..+++.|.+                     
T Consensus         2 Pr-~p~IpG~d~~~V~~a-----~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~   75 (162)
T d1ps9a2           2 PR-TPPIDGIDHPKVLSY-----LDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQA   75 (162)
T ss_dssp             EC-CCCCBTTTSTTEEEH-----HHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSG
T ss_pred             CC-CCCCCCCCCCCeEEH-----HHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhh
Confidence            54 466899999999873     223444556789999999999999999999998864                     


Q ss_pred             ----------------EEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC-CEEE
Q 018652           97 ----------------TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STID  159 (352)
Q Consensus        97 ----------------Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~  159 (352)
                                      ++.+......+...++..........++..||++++++.+.+++.  ++..  +...+. +.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~--~~~~g~e~~i~  151 (162)
T d1ps9a2          76 GGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLH--VVINGETQVLA  151 (162)
T ss_dssp             GGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEE--EEETTEEEEEC
T ss_pred             cccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCE--EecCCeEEEEE
Confidence                            333333333333335556666778889999999999999999973  3332  222322 3589


Q ss_pred             cCEEEEccCC
Q 018652          160 ADTIVIGIGA  169 (352)
Q Consensus       160 ~D~vi~a~G~  169 (352)
                      ||.||+|+|.
T Consensus       152 aD~Vv~A~Gq  161 (162)
T d1ps9a2         152 VDNVVICAGQ  161 (162)
T ss_dssp             CSEEEECCCE
T ss_pred             CCEEEECCCC
Confidence            9999999995

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.37  E-value=5.3e-12  Score=109.47  Aligned_cols=164  Identities=15%  Similarity=0.256  Sum_probs=112.7

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------------------------------------------
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------  108 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------------------------------------------  108 (352)
                      ...|+|||+|+.|+.+|..|++.|.+|+|+++.+.+..                                          
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccch
Confidence            35799999999999999999999999999998743210                                          


Q ss_pred             ---------------------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC-cEEEEEcCCCCEEEcCEEEEc
Q 018652          109 ---------------------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIG  166 (352)
Q Consensus       109 ---------------------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~-~~~~v~~~~g~~i~~D~vi~a  166 (352)
                                           ......+.+.+.+.+++.||+++++++|+++...+++ .+..+...+++++.||.||+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiA  163 (253)
T d2gqfa1          84 ISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVA  163 (253)
T ss_dssp             HHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEEC
T ss_pred             hhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEc
Confidence                                 0001234566777788899999999999999865543 222344567788999999999


Q ss_pred             cCCCCC--c-------hhhhhcCCcc------cCCcEEe---C-CCCCC-CCCCEEEeccccccCCccCCcccccccHHH
Q 018652          167 IGAKPT--V-------SPFERVGLNS------SVGGIQV---D-GQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDH  226 (352)
Q Consensus       167 ~G~~p~--~-------~~~~~~gl~~------~~g~i~v---d-~~~~t-~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~  226 (352)
                      +|-.+.  +       .+++++++..      ..|++.+   | ..|+. ..|++|.+|-+....... |..    ..+-
T Consensus       164 tGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~-gg~----n~~~  238 (253)
T d2gqfa1         164 TGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWL-GGY----NFQW  238 (253)
T ss_dssp             CCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECT-TTH----HHHH
T ss_pred             CCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeec-CCE----ehhh
Confidence            997642  1       2566666653      2245543   3 24665 679999999777654332 222    1222


Q ss_pred             HHHHHHHHHHHHh
Q 018652          227 ARQSAQHCIKALL  239 (352)
Q Consensus       227 A~~~g~~aa~~i~  239 (352)
                      |...|..+++.|.
T Consensus       239 a~~s~~~~~~~~~  251 (253)
T d2gqfa1         239 AWSSAYACALSIS  251 (253)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHh
Confidence            6666777776664

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.37  E-value=1.3e-11  Score=106.43  Aligned_cols=161  Identities=20%  Similarity=0.282  Sum_probs=112.4

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc--------------------------------------------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------------------------  108 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~--------------------------------------------  108 (352)
                      .|+|||+|+.|+.+|..|++.|.+|+|+++++.+..                                            
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            599999999999999999999999999997632200                                            


Q ss_pred             ---------------------cc-cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEc
Q 018652          109 ---------------------RL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG  166 (352)
Q Consensus       109 ---------------------~~-~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a  166 (352)
                                           .. ....+.+.+.+.+++.||+++++++|+++..+ ++.+..+.+++|+.+.+|.||+|
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vI~A  162 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIA  162 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEEC
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCCCCeEecCeEEEc
Confidence                                 00 01234456677788899999999999999864 56677788999999999999999


Q ss_pred             cCCCCCc---------hhhhhcCCcccC---CcEEeC----CCC-CCCCCCEEEeccccccCCccCCcccccccHHHHHH
Q 018652          167 IGAKPTV---------SPFERVGLNSSV---GGIQVD----GQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ  229 (352)
Q Consensus       167 ~G~~p~~---------~~~~~~gl~~~~---g~i~vd----~~~-~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~  229 (352)
                      +|.....         .++++.+.+...   ..+.++    ..+ .+..|++|.+|++........|.     ....|..
T Consensus       163 tGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~-----~~~~a~~  237 (251)
T d2i0za1         163 VGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGY-----NITSALV  237 (251)
T ss_dssp             CCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTH-----HHHHHHH
T ss_pred             cCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchH-----HHHHHHH
Confidence            9975422         256666655421   112221    122 24679999999998654433232     2334666


Q ss_pred             HHHHHHHHHh
Q 018652          230 SAQHCIKALL  239 (352)
Q Consensus       230 ~g~~aa~~i~  239 (352)
                      .|+.++..+.
T Consensus       238 ~G~~a~~~~~  247 (251)
T d2i0za1         238 TGRIAGTTAG  247 (251)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777766653

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.36  E-value=4.7e-12  Score=92.62  Aligned_cols=86  Identities=22%  Similarity=0.325  Sum_probs=72.4

Q ss_pred             CCCCCCCeeeeeccCcCCCCcceeeEEeecCcc--cEEE-EcCCC-CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHh
Q 018652          244 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIE-IGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR  319 (352)
Q Consensus       244 ~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~-~~~~~-~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~  319 (352)
                      .+|..+|||||+||+.+       +|++|....  +.+. .+..+ .+|..+|+++|+++|++. +|.++++..++++++
T Consensus         3 ~~y~~vP~FWSdQ~d~~-------iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~-vn~~~~~~~~rrli~   74 (97)
T d1d7ya3           3 PGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNARDFAPLRRLLA   74 (97)
T ss_dssp             CCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEeccCCCe-------eEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEE-eCCHHHHHHHHHHHH
Confidence            57999999999999864       999998664  3444 34544 679999999999999996 899999999999999


Q ss_pred             CCCCCChhhhcCCCchHH
Q 018652          320 SQPFVDKAKLQQASSVEE  337 (352)
Q Consensus       320 ~~~~~~~~~~~~~~~~~e  337 (352)
                      .+.++++..|.|+.+-..
T Consensus        75 ~~~~~~~~~LaD~~~~Lk   92 (97)
T d1d7ya3          75 VGAKPDRAALADPATDLR   92 (97)
T ss_dssp             TTCCCCHHHHHSSCCHHH
T ss_pred             CCCCCCHHHhcCCCCCHH
Confidence            999999999988776433

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=3.4e-11  Score=92.62  Aligned_cols=110  Identities=18%  Similarity=0.264  Sum_probs=89.4

Q ss_pred             CCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCc
Q 018652           49 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV  128 (352)
Q Consensus        49 ~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV  128 (352)
                      -.|++|+      ..+...+.++++|+|||||.+|+|.|..|++...+|++++|++.+.   .++...+.+.+..+..+|
T Consensus        11 gkgV~yc------a~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~~i   81 (126)
T d1trba2          11 GRGVSAC------ATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNI   81 (126)
T ss_dssp             TTTEESC------HHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSE
T ss_pred             CCCEEEE------EecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhcccce
Confidence            3677775      2334456789999999999999999999999999999999988653   466777788888888999


Q ss_pred             EEEcCCeEEEEEecCCCcEEEEEcCCC------CEEEcCEEEEccC
Q 018652          129 KFVKGASIKNLEAGSDGRVAAVKLEDG------STIDADTIVIGIG  168 (352)
Q Consensus       129 ~~~~~~~v~~i~~~~~~~~~~v~~~~g------~~i~~D~vi~a~G  168 (352)
                      .++.++.+.++..+ +..+..|++.+.      +++++|-+++++|
T Consensus        82 ~~~~~~~v~~i~G~-~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          82 ILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             eEecceEEEEEECC-CCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            99999999999864 445777777542      3599999999987

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.20  E-value=7.3e-11  Score=102.48  Aligned_cols=138  Identities=22%  Similarity=0.371  Sum_probs=87.5

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc--------------------------c--------cC------
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------------------L--------FT------  112 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------------------------~--------~~------  112 (352)
                      .++|||+|+.|+.+|..++++|.+|.++++.. +-..                          .        ++      
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~   81 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE   81 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence            48999999999999999999999999999752 1000                          0        00      


Q ss_pred             ------HHHHHHHHHHHHhCCcEEEcCCe-E-----EEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC-----Cchh
Q 018652          113 ------PSLAQRYEQLYQQNGVKFVKGAS-I-----KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP-----TVSP  175 (352)
Q Consensus       113 ------~~~~~~l~~~l~~~gV~~~~~~~-v-----~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p-----~~~~  175 (352)
                            ......+...+++.||+++.+.- .     ..+...++.........+++.+.+|.+|+|||.+|     +.+.
T Consensus        82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~  161 (259)
T d1onfa1          82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN  161 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred             hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence                  11233345667889999997642 1     11111111110011112345799999999999998     3332


Q ss_pred             --hhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccC
Q 018652          176 --FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP  211 (352)
Q Consensus       176 --~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  211 (352)
                        +++.++..+++.+.+|+..+|++.++|++||++...
T Consensus       162 ~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~  199 (259)
T d1onfa1         162 LKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK  199 (259)
T ss_dssp             SSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC
T ss_pred             cccccceeeecccccccccCCceeEeeEEEEEEeeehh
Confidence              345555566788999998999999999999998653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.20  E-value=2.3e-11  Score=100.75  Aligned_cols=133  Identities=20%  Similarity=0.235  Sum_probs=86.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~~~~--------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      .++||+|||||++|+++|..|+++|. +|+|+++++.+...        ...............+.+..+.....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            57999999999999999999999998 59999998766331        1234444555556667778887765542211


Q ss_pred             ecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh--hh-h-cCCcc-cCCcEEeC-CCCCCCCCCEEEeccccccC
Q 018652          141 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FE-R-VGLNS-SVGGIQVD-GQFRTRMPGIFAIGDVAAFP  211 (352)
Q Consensus       141 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~-~-~gl~~-~~g~i~vd-~~~~t~~~~Iya~GD~a~~~  211 (352)
                               ....+..+..+|.+++++|..+....  .. . ..... ..+....+ ..++|+.|.||++||++...
T Consensus        83 ---------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~  150 (196)
T d1gtea4          83 ---------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA  150 (196)
T ss_dssp             ---------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSC
T ss_pred             ---------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCc
Confidence                     01122234568889999986543221  11 1 11111 12344444 46889999999999998653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.20  E-value=4.7e-12  Score=111.84  Aligned_cols=103  Identities=11%  Similarity=0.085  Sum_probs=62.1

Q ss_pred             CcEEEcCCeEEEEEecCCCc----EEEEEc-----CCCCEEEcCEEEEccCCCCCc-------------hhhhhcCCccc
Q 018652          127 GVKFVKGASIKNLEAGSDGR----VAAVKL-----EDGSTIDADTIVIGIGAKPTV-------------SPFERVGLNSS  184 (352)
Q Consensus       127 gV~~~~~~~v~~i~~~~~~~----~~~v~~-----~~g~~i~~D~vi~a~G~~p~~-------------~~~~~~gl~~~  184 (352)
                      +.++++++.|++|....++.    ...+..     .+++.+++|.||++++...-.             +.+........
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            56788999999997543321    112221     234578999999998742210             01110000000


Q ss_pred             CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          185 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       185 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      .+.+.+++.++|+.|+||++||+...+           .+..|+.+|..||..|+.
T Consensus       323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHH
T ss_pred             CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHH
Confidence            112233455778899999999997643           445688899999988864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=3.4e-10  Score=86.87  Aligned_cols=107  Identities=23%  Similarity=0.362  Sum_probs=81.8

Q ss_pred             CCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHh-CC
Q 018652           49 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NG  127 (352)
Q Consensus        49 ~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~-~g  127 (352)
                      -.|++|+      ..+...+.++|+|+|||+|.+|++.|..|++...+|++++|++.+..   .+.    +.+.+++ .+
T Consensus        14 gkGV~yc------a~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~----~~~~~~~~~~   80 (126)
T d1fl2a2          14 TKGVTYC------PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQV----LQDKLRSLKN   80 (126)
T ss_dssp             TTTEESC------HHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHH----HHHHHHTCTT
T ss_pred             CCCEEEE------EecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---ccc----cccccccccc
Confidence            3678875      23344577899999999999999999999999999999999876532   222    2333444 56


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEcCC---CC--EEEcCEEEEccCC
Q 018652          128 VKFVKGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGA  169 (352)
Q Consensus       128 V~~~~~~~v~~i~~~~~~~~~~v~~~~---g~--~i~~D~vi~a~G~  169 (352)
                      |++++++.+.++..+ +..+..+++.+   |+  ++++|.++++.|.
T Consensus        81 I~v~~~~~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          81 VDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             EEEESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             eeEEcCcceEEEEcc-ccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            999999999999854 34566777643   43  6999999999883

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.12  E-value=5.5e-10  Score=99.86  Aligned_cols=98  Identities=20%  Similarity=0.247  Sum_probs=73.7

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------  107 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------------------------------------------  107 (352)
                      -.|+|||+|..|+-+|..|++.|.+|.|+++.+..-                                            
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~  103 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP  103 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCH
Confidence            479999999999999999999999999999752110                                            


Q ss_pred             -----------------------------------c--------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC
Q 018652          108 -----------------------------------Q--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  144 (352)
Q Consensus       108 -----------------------------------~--------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~  144 (352)
                                                         +        ......+...+.+.+.++|+++++++.++++..+++
T Consensus       104 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~  183 (322)
T d1d4ca2         104 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS  183 (322)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSS
T ss_pred             HHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeeccccccccc
Confidence                                               0        001123445566667889999999999999887667


Q ss_pred             CcEEEEEcCC--CC--EEEcCEEEEccCC
Q 018652          145 GRVAAVKLED--GS--TIDADTIVIGIGA  169 (352)
Q Consensus       145 ~~~~~v~~~~--g~--~i~~D~vi~a~G~  169 (352)
                      +++..|...+  +.  .+.++.||+|+|-
T Consensus       184 G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG  212 (322)
T d1d4ca2         184 GKVTGVLVKGEYTGYYVIKADAVVIAAGG  212 (322)
T ss_dssp             SCCCEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             ccccceEEEeecccEEEEeCCeEEEcCCC
Confidence            7776665432  22  5899999999984

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.12  E-value=6.6e-11  Score=105.77  Aligned_cols=108  Identities=11%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             HHhCCcEEEcCCeEEEEEecCCCcEEEEEc--CCCCEEEcCEEEEccCCC--------CCchhhh-hc--CCcccCCcEE
Q 018652          123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGSTIDADTIVIGIGAK--------PTVSPFE-RV--GLNSSVGGIQ  189 (352)
Q Consensus       123 l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~--~~g~~i~~D~vi~a~G~~--------p~~~~~~-~~--gl~~~~g~i~  189 (352)
                      +++.|+++++++.|++|+.++++....+..  .++++++||.||+|++..        |.....+ ++  .+........
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~~~  324 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQFQH  324 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHHHH
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcccccc
Confidence            466799999999999998765544333333  344689999999998632        2211100 00  0000000011


Q ss_pred             eCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          190 VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       190 vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      .++.+.++..+||.+||++..+..         .+..|+..|..||.+|.
T Consensus       325 ~~~~~~~~~g~v~~aGd~~~~~~~---------~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         325 FSDPLTASQGRIYFAGEYTAQAHG---------WIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHCCBTTEEECSGGGSSSSS---------CHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCEEEecccccCCCc---------ccHHHHHHHHHHHHHHH
Confidence            112233344679999998865431         34568999999999885

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.03  E-value=1.8e-09  Score=82.99  Aligned_cols=106  Identities=15%  Similarity=0.235  Sum_probs=79.0

Q ss_pred             CcEEEecCHHHHHHHHH--hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCC
Q 018652           50 PGVHYIRDVADADALIS--SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG  127 (352)
Q Consensus        50 ~~v~~~~~~~~~~~~~~--~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~g  127 (352)
                      .|++|+-      .+..  .+.++|+|+|||||.++++.|.+|++...+||+++|++.+-.   .+.   ..++.++..+
T Consensus        17 kGVsyca------~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~---~~~~l~~~~n   84 (130)
T d1vdca2          17 RGISACA------VCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKI---MQQRALSNPK   84 (130)
T ss_dssp             TTEESCH------HHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTT
T ss_pred             CcEEEEE------EecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chh---hhhccccCCc
Confidence            6887752      3332  267899999999999999999999999999999999986643   222   2344445567


Q ss_pred             cEEEcCCeEEEEEecCC-CcEEEEEcC---CC--CEEEcCEEEEcc
Q 018652          128 VKFVKGASIKNLEAGSD-GRVAAVKLE---DG--STIDADTIVIGI  167 (352)
Q Consensus       128 V~~~~~~~v~~i~~~~~-~~~~~v~~~---~g--~~i~~D~vi~a~  167 (352)
                      |++++++.+.++..++. +.+..+.+.   +|  +++++|-+++++
T Consensus        85 I~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          85 IDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             eEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            99999999999986432 345555543   34  479999999874

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=4e-10  Score=91.68  Aligned_cols=89  Identities=17%  Similarity=0.214  Sum_probs=71.3

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc----------ccCHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------LFTPSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~----------~~~~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      ..+|+|+|||+|+.|+++|..|+++|++|+++++.+.+-..          ....++.+++.+++++.||++++|+.|+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~  120 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA  120 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence            46799999999999999999999999999999998765221          12235677888889999999999986531


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCc
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV  173 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  173 (352)
                                     + ....+|.||+|+|..|..
T Consensus       121 ---------------~-~~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         121 ---------------D-QLQAFDETILASGIPNRA  139 (179)
T ss_dssp             ---------------S-SSCCSSEEEECCCEECCT
T ss_pred             ---------------c-ccccceeEEEeecCCCcc
Confidence                           1 135789999999998864

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.01  E-value=2.1e-10  Score=100.61  Aligned_cols=105  Identities=18%  Similarity=0.236  Sum_probs=62.6

Q ss_pred             HHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC--CEEEcCEEEEccCCCCCchhhhhcCCcc--------cCCc---EE
Q 018652          123 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS--------SVGG---IQ  189 (352)
Q Consensus       123 l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~--------~~g~---i~  189 (352)
                      .++.|++++++++|++|+..+++.. .+...+|  ++++||.||+|+|......++.+..-..        ..+.   +.
T Consensus       229 ~~~~g~~i~~~~~V~~I~~~~~~~~-v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  307 (347)
T d2ivda1         229 AASLGDAAHVGARVEGLAREDGGWR-LIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVA  307 (347)
T ss_dssp             HHHHGGGEESSEEEEEEECC--CCE-EEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTTHHHHHH
T ss_pred             HHHhhcccccCCEEEEEEEeCCeEE-EEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecCccccee
Confidence            3445889999999999986544432 2233333  4689999999998542222332211100        0111   11


Q ss_pred             eCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          190 VDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       190 vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      ..+...++.|++|++||.....           ..+.++.+|..+|+.|.
T Consensus       308 ~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         308 AIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred             cccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence            1112235789999999976532           34568888988888775

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.93  E-value=1.1e-08  Score=90.52  Aligned_cols=98  Identities=18%  Similarity=0.213  Sum_probs=72.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc--------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------------------------  107 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~--------------------------------------------  107 (352)
                      -.|+|||+|..|+-+|..|++.|.+|+|+++.+..-                                            
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~   96 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP   96 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccch
Confidence            379999999999999999999999999999762110                                            


Q ss_pred             -----------------------------------ccc--------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC
Q 018652          108 -----------------------------------QRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  144 (352)
Q Consensus       108 -----------------------------------~~~--------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~  144 (352)
                                                         ++.        ....+...+.+.+.+.|++++.++.++++..+++
T Consensus        97 ~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~  176 (308)
T d1y0pa2          97 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK  176 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred             HHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhcc
Confidence                                               000        0012334445556778999999999999877777


Q ss_pred             CcEEEEEcCC--C--CEEEcCEEEEccCC
Q 018652          145 GRVAAVKLED--G--STIDADTIVIGIGA  169 (352)
Q Consensus       145 ~~~~~v~~~~--g--~~i~~D~vi~a~G~  169 (352)
                      +++..|...+  +  ..+.++.||+|+|-
T Consensus       177 G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         177 GTVKGILVKGMYKGYYWVKADAVILATGG  205 (308)
T ss_dssp             SCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             cccccccccccccceeEeecCeEEEccCc
Confidence            8887776543  2  25889999999984

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.93  E-value=8.8e-09  Score=90.86  Aligned_cols=99  Identities=13%  Similarity=0.154  Sum_probs=81.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc----------------------------------cc--cCHHH
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------RL--FTPSL  115 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~----------------------------------~~--~~~~~  115 (352)
                      -+|+|||+|++|+-+|..|.+.|.+++++++.+.+-.                                  ..  ..+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            4699999999999999999999999999998643200                                  00  12356


Q ss_pred             HHHHHHHHHhCCc--EEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC
Q 018652          116 AQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK  170 (352)
Q Consensus       116 ~~~l~~~l~~~gV--~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  170 (352)
                      .+++++..++.++  .+.++++|+++..+++.....|++.++++..+|.+|+|+|..
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence            7888888888898  599999999998655556678999999999999999999963

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.91  E-value=4.7e-09  Score=83.12  Aligned_cols=94  Identities=22%  Similarity=0.383  Sum_probs=66.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCc-EEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  148 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~  148 (352)
                      .+++|+|||||++|+|+|..+.++|.+ |+++.|++..-.. ..+    .-...+...+++++.+..+.++... ++...
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-a~~----~~~~~a~~~~~~~~~~~~~~ei~~~-~~~~~  117 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVP----EEVELAKEEKCEFLPFLSPRKVIVK-GGRIV  117 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCH----HHHHHHHHTTCEEECSEEEEEEEEE-TTEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-cch----hheeecccccceeEeccccEEEEec-CCceE
Confidence            457999999999999999999999865 8888887643321 111    2223456678999999888888743 34433


Q ss_pred             EEEc------CCC---------CEEEcCEEEEccCC
Q 018652          149 AVKL------EDG---------STIDADTIVIGIGA  169 (352)
Q Consensus       149 ~v~~------~~g---------~~i~~D~vi~a~G~  169 (352)
                      .+..      ++|         .+++||.||+|+|.
T Consensus       118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            3322      222         25899999999983

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.89  E-value=1.3e-08  Score=90.64  Aligned_cols=98  Identities=18%  Similarity=0.295  Sum_probs=74.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcc---------------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------------------------  106 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~---------------------------------------------  106 (352)
                      -.|+|||+|..|+-+|..+++.|.+|.|+++.+..                                             
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~   99 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI   99 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccch
Confidence            35999999999999999999999999999875210                                             


Q ss_pred             ----------------------------------cccc--------cCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCC
Q 018652          107 ----------------------------------LQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD  144 (352)
Q Consensus       107 ----------------------------------~~~~--------~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~  144 (352)
                                                        .++.        .++.+...+.+.+++.|+++++++.++++..+++
T Consensus       100 ~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~  179 (317)
T d1qo8a2         100 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD  179 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred             hHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeeccc
Confidence                                              0000        0123556667777899999999999999876667


Q ss_pred             CcEEEEEcC--CCC--EEEcCEEEEccCC
Q 018652          145 GRVAAVKLE--DGS--TIDADTIVIGIGA  169 (352)
Q Consensus       145 ~~~~~v~~~--~g~--~i~~D~vi~a~G~  169 (352)
                      +++..+...  +++  .+.++.||+|+|-
T Consensus       180 g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         180 HSVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             SBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             ccceeeEeecccceEEEEeccceEEeccc
Confidence            787776553  343  5789999999984

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.86  E-value=3.5e-10  Score=97.25  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=64.4

Q ss_pred             CCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCC----------CchhhhhcCCcccCCcEEeC----
Q 018652          126 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP----------TVSPFERVGLNSSVGGIQVD----  191 (352)
Q Consensus       126 ~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p----------~~~~~~~~gl~~~~g~i~vd----  191 (352)
                      .+..+..++.+..+....+ . ..|.+.+|+.+++|.++++.+...          ..+-.+...+. ..+...++    
T Consensus       223 ~~~~i~~~~~v~~i~~~~~-~-v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~-~~~~~~~~~~~~  299 (347)
T d1b5qa1         223 VDPRLQLNKVVREIKYSPG-G-VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY-QFWPVGVNRYEY  299 (347)
T ss_dssp             CCTTEESSCCEEEEEECSS-C-EEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHH-HSCBTTCCHHHH
T ss_pred             cccccccccccccccccCc-c-EEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHH-hcCCccccccch
Confidence            3557788888888876533 3 358889999999999999876421          10000000000 11111222    


Q ss_pred             CCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          192 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       192 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      +.++++.++||++||++....+.        ..+.|+.+|..+|+.|++
T Consensus       300 ~~~~~~~~~v~~~GD~~~~~~~~--------~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         300 DQLRAPVGRVYFTGEHTSEHYNG--------YVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             HHHHCCBTTEEECSGGGCSSCTT--------SHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccCCEEEEEccccCcCCC--------HHHHHHHHHHHHHHHHHH
Confidence            24567889999999998654331        344578888888887764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.85  E-value=6.2e-09  Score=90.38  Aligned_cols=69  Identities=20%  Similarity=0.364  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCcccCCc
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG  187 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~g~  187 (352)
                      +...+.+.+++.|++++.+++|++|+++  +....|++++| ++.||.||+|+|.-.. .+++.+|+...++.
T Consensus       153 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~V~t~~g-~i~a~~vV~AaG~~s~-~l~~~~G~~~~~~~  221 (276)
T d1ryia1         153 VCKAYVKAAKMLGAEIFEHTPVLHVERD--GEALFIKTPSG-DVWANHVVVASGVWSG-MFFKQLGLNNADGK  221 (276)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECS--SSSEEEEETTE-EEEEEEEEECCGGGTH-HHHHHTTCCCCSSC
T ss_pred             chhHHHHHHHHcCCEEecceEEEeEEee--cceEEEecCCe-EEEcCEEEECCCccHH-HHHhhcCCCccccc
Confidence            3455666678899999999999999854  34457888887 6999999999997654 57888888754433

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.79  E-value=1.9e-07  Score=83.26  Aligned_cols=123  Identities=18%  Similarity=0.230  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCCCC-----------c----h
Q 018652          115 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPT-----------V----S  174 (352)
Q Consensus       115 ~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~-----------~----~  174 (352)
                      +...+.+..++.|++++.++.+.++..+ ++++..+.   ..+|+  .+.++.||+|||--..           +    .
T Consensus       160 i~~~l~~~~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~  238 (336)
T d2bs2a2         160 MLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTA  238 (336)
T ss_dssp             HHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHH
T ss_pred             HHHHHHHHHHhccccccceeeeeecccc-cccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhh
Confidence            3444556667789999999999887754 55554433   35665  5789999999985421           0    1


Q ss_pred             hhhhcCCc-c-cCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          175 PFERVGLN-S-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       175 ~~~~~gl~-~-~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      +....|.. . +-++|.+|+..+|+.|++|++||++........+.. -..+..+...+...++.++
T Consensus       239 ~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~-~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         239 IALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLG-GNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             HHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCT-THHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccceeechhhcccCCcceeccccccccccccccch-hhccchhhhhcchhHHHHH
Confidence            22334432 2 457899999999999999999998764322111110 1123334455555555444

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.75  E-value=2.7e-08  Score=87.58  Aligned_cols=66  Identities=24%  Similarity=0.332  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCc
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN  182 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~  182 (352)
                      .+...+.+.+++.|++++.+++|+++... ++++..|.+.+| +++||.||+|+|.-.+ ++++.+|+.
T Consensus       149 ~l~~~l~~~a~~~gv~i~~~~~V~~i~~~-~~~v~~V~T~~g-~i~a~~VV~aaG~~s~-~l~~~~g~~  214 (305)
T d1pj5a2         149 RAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIGMA  214 (305)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTTCC
T ss_pred             hhhhhHHhhhhcccccccCCceEEEEEEe-CCEEEEEeccce-eEECCEEEEecchhHH-HHHHHcCCc
Confidence            34456666778899999999999999865 667778888777 5999999999997543 566666554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.74  E-value=8e-08  Score=85.90  Aligned_cols=99  Identities=18%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCCcccc---------------------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ---------------------------------------  108 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~---------------------------------------  108 (352)
                      .-|+|+|||+|++|+.+|..|++.+  .+|+++++++.+-.                                       
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   82 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   82 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccccc
Confidence            3489999999999999999998876  59999999865410                                       


Q ss_pred             ------------------------ccc--CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC---CC---
Q 018652          109 ------------------------RLF--TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GS---  156 (352)
Q Consensus       109 ------------------------~~~--~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~---g~---  156 (352)
                                              ..+  .+++.+++....+..+..+++++.|++++..+ ++. .|++.+   ++   
T Consensus        83 y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~-~~w-~Vt~~~~~~~~~~~  160 (335)
T d2gv8a1          83 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD-GSW-VVTYKGTKAGSPIS  160 (335)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET-TEE-EEEEEESSTTCCEE
T ss_pred             chhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecC-CEE-EEEEEecCCCCeEE
Confidence                                    000  12456677777677788899999999998753 432 344332   22   


Q ss_pred             EEEcCEEEEccCCC
Q 018652          157 TIDADTIVIGIGAK  170 (352)
Q Consensus       157 ~i~~D~vi~a~G~~  170 (352)
                      ...+|.||+|+|..
T Consensus       161 ~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         161 KDIFDAVSICNGHY  174 (335)
T ss_dssp             EEEESEEEECCCSS
T ss_pred             EEEeeEEEEccccc
Confidence            45699999999974

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.72  E-value=6.1e-08  Score=84.25  Aligned_cols=67  Identities=18%  Similarity=0.449  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchhhhhcCCccc
Q 018652          114 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS  184 (352)
Q Consensus       114 ~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~  184 (352)
                      .+...+.+.+++.|++++.+++|.+++..++ .+ .|.+++| ++.||.||+|+|.-.+ .++..+|+...
T Consensus       151 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~v-~V~t~~g-~i~a~~VViAaG~~s~-~l~~~lg~~~~  217 (281)
T d2gf3a1         151 NCIRAYRELAEARGAKVLTHTRVEDFDISPD-SV-KIETANG-SYTADKLIVSMGAWNS-KLLSKLNLDIP  217 (281)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSS-CE-EEEETTE-EEEEEEEEECCGGGHH-HHGGGGTEECC
T ss_pred             ccccccccccccccccccCCcEEEEEEEECC-EE-EEEECCc-EEEcCEEEECCCCcch-hhHHhcCCccc
Confidence            3455666677889999999999999987544 33 6788877 5999999999997544 56777776654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.9e-08  Score=86.13  Aligned_cols=109  Identities=13%  Similarity=0.146  Sum_probs=66.7

Q ss_pred             HHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCC--------CCch-hhhhcCCc-ccCCc-EEe
Q 018652          122 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK--------PTVS-PFERVGLN-SSVGG-IQV  190 (352)
Q Consensus       122 ~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~--------p~~~-~~~~~gl~-~~~g~-i~v  190 (352)
                      .+++.|.++++++.|++|...+ +.+ .|++.+|+++++|.||++++..        |... ...+..-. ...+. -..
T Consensus       216 l~~~~g~~i~~~~~v~~I~~~~-~~v-~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~  293 (383)
T d2v5za1         216 IMDLLGDRVKLERPVIYIDQTR-ENV-LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQY  293 (383)
T ss_dssp             HHHHHGGGEEESCCEEEEECSS-SSE-EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHH
T ss_pred             HHHHcCCeEEecCcceEEEecC-CeE-EEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCccchh
Confidence            3456789999999999998653 343 5889999999999999998642        1110 01111000 01111 111


Q ss_pred             CCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 018652          191 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS  240 (352)
Q Consensus       191 d~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~  240 (352)
                      ...+.....+|+.+|+.......        ..+..|+.+|+.+|+.++.
T Consensus       294 ~~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~~  335 (383)
T d2v5za1         294 GRVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREILH  335 (383)
T ss_dssp             GGGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHHH
Confidence            22334455679999976543221        1455688889988888754

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.65  E-value=1.1e-07  Score=80.06  Aligned_cols=128  Identities=18%  Similarity=0.183  Sum_probs=79.7

Q ss_pred             CCCCCCCCCcEEEecCHHHHHHHH---Hh---hcCCCeEEEECCChHHHHHHHHHHhC--------------------C-
Q 018652           42 PEKIGGYLPGVHYIRDVADADALI---SS---LEKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-   94 (352)
Q Consensus        42 ~~~~g~~~~~v~~~~~~~~~~~~~---~~---~~~~~~vvVvGgG~~g~e~A~~l~~~--------------------g-   94 (352)
                      ..+||.+++|++...++...-.-.   ..   ...+++|+|||+|++|+++|..|.+.                    | 
T Consensus         4 L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~   83 (225)
T d1cjca1           4 LDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRV   83 (225)
T ss_dssp             CCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCC
Confidence            357899999998754332110000   00   12478999999999999999999873                    3 


Q ss_pred             CcEEEEecCCcccccccCHHHHH-----------------------------------HHHHHH--------------Hh
Q 018652           95 LDTTIIFPENHLLQRLFTPSLAQ-----------------------------------RYEQLY--------------QQ  125 (352)
Q Consensus        95 ~~Vtvv~~~~~~~~~~~~~~~~~-----------------------------------~l~~~l--------------~~  125 (352)
                      .+|+++.|+...-..+..+++.+                                   .+.+.+              ..
T Consensus        84 ~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (225)
T d1cjca1          84 KTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASAS  163 (225)
T ss_dssp             CEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCS
T ss_pred             CeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccccccccccc
Confidence            57999988753211111122111                                   111111              12


Q ss_pred             CCcEEEcCCeEEEEEecCCC-cEEEEEcC---------------CC--CEEEcCEEEEccCC
Q 018652          126 NGVKFVKGASIKNLEAGSDG-RVAAVKLE---------------DG--STIDADTIVIGIGA  169 (352)
Q Consensus       126 ~gV~~~~~~~v~~i~~~~~~-~~~~v~~~---------------~g--~~i~~D~vi~a~G~  169 (352)
                      .++.+.+.....++..++++ ++..+++.               .|  ..++||+||.|+|+
T Consensus       164 ~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         164 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            46889999999999876554 55554431               12  25899999999995

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.63  E-value=6e-07  Score=76.72  Aligned_cols=101  Identities=17%  Similarity=0.281  Sum_probs=73.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc-----cCHHHHH---------------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTPSLAQ---------------------------  117 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~-----~~~~~~~---------------------------  117 (352)
                      ..+||+|||+|+.|+.+|..|++.|.+|+|+++++.+....     +.+....                           
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   82 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   82 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence            35789999999999999999999999999999865432110     1111111                           


Q ss_pred             -----------------HHHH-HHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          118 -----------------RYEQ-LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       118 -----------------~l~~-~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                                       .+.. .-...++.++.++.++++....++  ..+++.||+++++|++|.|.|....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1          83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCH
T ss_pred             ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEecccccccc
Confidence                             1111 123456888999999999865443  3688999999999999999997664

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=3.5e-07  Score=77.03  Aligned_cols=56  Identities=18%  Similarity=0.228  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhCCcEEEcCCeEEEEEecCC-CcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          116 AQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       116 ~~~l~~~l~~~gV~~~~~~~v~~i~~~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      .+.+.+.+++.|++++++++|++|...++ +++..| +.+|++++||.||....+-|+
T Consensus       239 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~~  295 (297)
T d2bcgg1         239 PQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFPE  295 (297)
T ss_dssp             HHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhccC
Confidence            34456667889999999999999975433 455444 467889999999986555553

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.45  E-value=7.1e-07  Score=74.61  Aligned_cols=99  Identities=18%  Similarity=0.315  Sum_probs=70.3

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC-cc----------------ccccc---CH---HHHHHHHHHHHh-CC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HL----------------LQRLF---TP---SLAQRYEQLYQQ-NG  127 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~-~~----------------~~~~~---~~---~~~~~l~~~l~~-~g  127 (352)
                      -.|+|||||+.|+|.|.++++.|.++.+|+.+. .+                +.+..   ++   .....+++.+++ .+
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~n   82 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   82 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcC
Confidence            469999999999999999999999999998642 11                00000   11   122223444443 47


Q ss_pred             cEEEcCCeEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          128 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       128 V~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      +.++.+. |..+.. +++.+..|.+.+|.++.|..||++||..-+
T Consensus        83 L~i~q~~-V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          83 LHLFQAT-ATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             EEEEECC-EEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHhcc-ceeeEe-cccceeeEEeccccEEEEeEEEEccCccee
Confidence            8888664 666653 366788999999999999999999997543

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.8e-06  Score=75.74  Aligned_cols=88  Identities=23%  Similarity=0.393  Sum_probs=61.0

Q ss_pred             HHHhCCcEEEcCCeEEEEEecCC------CcEEEEEc---CCCC--EEEcCEEEEccCCCCC-----------c----hh
Q 018652          122 LYQQNGVKFVKGASIKNLEAGSD------GRVAAVKL---EDGS--TIDADTIVIGIGAKPT-----------V----SP  175 (352)
Q Consensus       122 ~l~~~gV~~~~~~~v~~i~~~~~------~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~-----------~----~~  175 (352)
                      .+++.+++++.++.+.++..+++      +++..+..   .+++  .+.++.||+|+|-...           +    .+
T Consensus       147 ~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~m  226 (305)
T d1chua2         147 ALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAM  226 (305)
T ss_dssp             HHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHH
T ss_pred             HHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEee
Confidence            33556788888888887764432      24555543   3443  4789999999985321           1    13


Q ss_pred             hhhcCCccc-CCcEEeCCCCCCCCCCEEEeccccc
Q 018652          176 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA  209 (352)
Q Consensus       176 ~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~  209 (352)
                      +.++|.+.. -++|.+|++.+|+.|++||+|+++.
T Consensus       227 A~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~  261 (305)
T d1chua2         227 AWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY  261 (305)
T ss_dssp             HHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred             ccccceeeEecceeEECCcccCCCCCceecccEEE
Confidence            445676653 4789999999999999999999764

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.41  E-value=6.6e-06  Score=74.51  Aligned_cols=161  Identities=19%  Similarity=0.263  Sum_probs=106.7

Q ss_pred             CeEEEECCChHHHHHHHHHHh------CCCcEEEEecCCcccc-------------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVG------WKLDTTIIFPENHLLQ-------------------------------------  108 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~------~g~~Vtvv~~~~~~~~-------------------------------------  108 (352)
                      -.|+|||||+.|+-+|..|++      .|.+|.|++++..+-.                                     
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~  112 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  112 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceEE
Confidence            479999999999999999997      8999999998732200                                     


Q ss_pred             ------------------------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCC----------
Q 018652          109 ------------------------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED----------  154 (352)
Q Consensus       109 ------------------------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~----------  154 (352)
                                              .........++.+..++.|+.+..+..+.++...+++.+..+...+          
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  192 (380)
T d2gmha1         113 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  192 (380)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             EeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeeccccccccccccccc
Confidence                                    0011234456677778899999999999998876666554443322          


Q ss_pred             -----CCEEEcCEEEEccCCCCCc--hhhhhcCCccc---CCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccH
Q 018652          155 -----GSTIDADTIVIGIGAKPTV--SPFERVGLNSS---VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV  224 (352)
Q Consensus       155 -----g~~i~~D~vi~a~G~~p~~--~~~~~~gl~~~---~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~  224 (352)
                           +....++..+++.|.+...  ++++...+...   .++..  ..-+...|++..+||++.+-++..+     +-+
T Consensus       193 ~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g-----~GI  265 (380)
T d2gmha1         193 TTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKI-----KGT  265 (380)
T ss_dssp             EEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTT-----BCH
T ss_pred             ccccccccccccEEEEeeeCCCcchHHHHhhhhhccccccccccc--cccccccCCeeEEeccccccchhhc-----CCe
Confidence                 1246688889999976543  22332222211   11211  0112345899999999998665443     356


Q ss_pred             HHHHHHHHHHHHHHh
Q 018652          225 DHARQSAQHCIKALL  239 (352)
Q Consensus       225 ~~A~~~g~~aa~~i~  239 (352)
                      ..|+..|+.||+.+.
T Consensus       266 ~~Am~SG~lAAeai~  280 (380)
T d2gmha1         266 HTAMKSGTLAAESIF  280 (380)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             eeeeccHHHHHHHHH
Confidence            668888888888775

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.36  E-value=6e-06  Score=70.73  Aligned_cols=156  Identities=16%  Similarity=0.132  Sum_probs=94.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCccccc----ccCHHHH------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR----LFTPSLA------------------------------  116 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~~~~----~~~~~~~------------------------------  116 (352)
                      -+|+|||||+.|+-+|..|++.|. +|+|+++++.+...    .+.+...                              
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   81 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence            479999999999999999999995 89999987543210    0111111                              


Q ss_pred             --------------------------HHHHH--HHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCC----CEEEcCEEE
Q 018652          117 --------------------------QRYEQ--LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIV  164 (352)
Q Consensus       117 --------------------------~~l~~--~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g----~~i~~D~vi  164 (352)
                                                ..+..  .....++.+..++.++.+...+++.  .+.+.+|    +++.+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v--~v~~~~g~~~~~~~~ad~vi  159 (288)
T d3c96a1          82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRV--LIGARDGHGKPQALGADVLV  159 (288)
T ss_dssp             EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEE--EEEEEETTSCEEEEEESEEE
T ss_pred             EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcE--EEEEEcCCCCeEEEeeceee
Confidence                                      11111  1133578888888888887654433  4455444    368999999


Q ss_pred             EccCCCCCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 018652          165 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL  239 (352)
Q Consensus       165 ~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~  239 (352)
                      .|-|......-.  .....   .............++...||++....+..|.     ....|+..+...+..+.
T Consensus       160 ~ADG~~S~vr~~--~~~~~---~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~-----G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         160 GADGIHSAVRAH--LHPDQ---RPLRDPLPHWGRGRITLLGDAAHLMYPMGAN-----GASQAILDGIELAAALA  224 (288)
T ss_dssp             ECCCTTCHHHHH--HCTTC---CCCCCCCSCCCBTTEEECTHHHHCCCSSTTC-----THHHHHHHHHHHHHHHH
T ss_pred             ccCCccceeeee--ecccc---ccccccccccccCcceecccccceeCCcccc-----chhhhhhhHHHHHHHHh
Confidence            999986532211  10000   0000111223456789999998765554443     23346666666666665

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.33  E-value=8.8e-06  Score=70.42  Aligned_cols=129  Identities=17%  Similarity=0.163  Sum_probs=81.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc------ccc----------------------------------
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------RLF----------------------------------  111 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~------~~~----------------------------------  111 (352)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+....      ..+                                  
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~   82 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence            3799999999999999999999999999998742100      000                                  


Q ss_pred             -------------------CHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEcCCCC--EEEcCEEEEccCCC
Q 018652          112 -------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAK  170 (352)
Q Consensus       112 -------------------~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~  170 (352)
                                         -..+.+.+.+.+++.+..++.+.........++..+......+|+  ++.||+||.|.|.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~  162 (292)
T d1k0ia1          83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH  162 (292)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred             ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence                               123445556666777777777776665543333333222234554  57899999999987


Q ss_pred             CCchhhhhcCCcccCCcEEeCCCCCCCCCCEEEeccccccCCcc
Q 018652          171 PTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM  214 (352)
Q Consensus       171 p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~  214 (352)
                      ....-  ..+..            .......+.+||++....+.
T Consensus       163 S~vR~--~i~~~------------~~~~~~~~~~~~~~~~~~p~  192 (292)
T d1k0ia1         163 GISRQ--SIPAE------------RMQHGRLFLAGDAAHIVPPT  192 (292)
T ss_dssp             CSTGG--GSCGG------------GSEETTEEECGGGTEECCGG
T ss_pred             Ccccc--eeeec------------cccccccccceeeeeecCCc
Confidence            64321  11111            11235677889987654443

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.33  E-value=2.7e-06  Score=70.80  Aligned_cols=63  Identities=19%  Similarity=0.179  Sum_probs=42.6

Q ss_pred             CCCCCCCCCcEEEecCHHHHHHHH---H---hhcCCCeEEEECCChHHHHHHHHHH--------------------hCC-
Q 018652           42 PEKIGGYLPGVHYIRDVADADALI---S---SLEKAKKVVVVGGGYIGMEVAAAAV--------------------GWK-   94 (352)
Q Consensus        42 ~~~~g~~~~~v~~~~~~~~~~~~~---~---~~~~~~~vvVvGgG~~g~e~A~~l~--------------------~~g-   94 (352)
                      ..+||.+++|++...++...-.-.   .   ....+++|+|||+|++|+++|..|.                    +.| 
T Consensus         4 L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~   83 (216)
T d1lqta1           4 LNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGI   83 (216)
T ss_dssp             CCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCC
T ss_pred             CCCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCC
Confidence            357899999998753322110000   0   0114789999999999999999886                    344 


Q ss_pred             CcEEEEecCC
Q 018652           95 LDTTIIFPEN  104 (352)
Q Consensus        95 ~~Vtvv~~~~  104 (352)
                      .+|+++.|+.
T Consensus        84 ~~V~iv~RRg   93 (216)
T d1lqta1          84 QEVVIVGRRG   93 (216)
T ss_dssp             CEEEEECSSC
T ss_pred             ceEEEEEECC
Confidence            4699998764

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.3e-05  Score=70.49  Aligned_cols=90  Identities=22%  Similarity=0.413  Sum_probs=63.7

Q ss_pred             HHHHHhCCcEEEcCCeEEEEEecCCCcEEEEE---cCCCC--EEEcCEEEEccCCC-----CCc----------hhhhhc
Q 018652          120 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAK-----PTV----------SPFERV  179 (352)
Q Consensus       120 ~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~-----p~~----------~~~~~~  179 (352)
                      .+..+..+|+++.++.+.++..+ ++++..+.   ..+|+  .+.++.||+|||--     .++          .++..+
T Consensus       142 ~~~~~~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~a  220 (311)
T d1kf6a2         142 QTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSH  220 (311)
T ss_dssp             HHHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTT
T ss_pred             HHHHccCcceeEeeeEeeeeEec-CCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhc
Confidence            33344568999999999998754 56665554   45675  46799999999842     111          133455


Q ss_pred             CCcc-cCCcEEeCCCCCCCCCCEEEecccccc
Q 018652          180 GLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAF  210 (352)
Q Consensus       180 gl~~-~~g~i~vd~~~~t~~~~Iya~GD~a~~  210 (352)
                      |.+. +-.+|.++++..+..+++|+.|++..-
T Consensus       221 Ga~l~dme~iq~~p~~~~~~~~~~~~~~~~~~  252 (311)
T d1kf6a2         221 GVPLRDMGGIETDQNCETRIKGLFAVGECSSV  252 (311)
T ss_dssp             TCCEESCCEEECCTTSBCSSBTEEECGGGEEC
T ss_pred             ccceeecccccccccchhcccCCCcCcceeee
Confidence            6654 346888999888889999999998763

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.28  E-value=5.3e-07  Score=75.82  Aligned_cols=90  Identities=14%  Similarity=0.194  Sum_probs=63.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcccc---------cccCHHHHHHHHHHHHhCCcEEEcCCeEEEEE
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE  140 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~~~---------~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~  140 (352)
                      .+|+|||+|+.|+.+|..|++.  |.+|+|+++.+.+..         ......+.......+++.|++++.++.+..  
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--   79 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR--   79 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT--
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc--
Confidence            3799999999999999999764  789999999876521         112334556667778889999998875511  


Q ss_pred             ecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          141 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       141 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                         +-     ...+ -.-.+|.+++|+|..+.
T Consensus        80 ---~~-----~~~~-l~~~~d~v~~a~Ga~~~  102 (230)
T d1cjca2          80 ---DV-----TVQE-LQDAYHAVVLSYGAEDK  102 (230)
T ss_dssp             ---TB-----CHHH-HHHHSSEEEECCCCCEE
T ss_pred             ---cc-----cHHH-HHhhhceEEEEeecccc
Confidence               10     0000 01258999999998754

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=1.2e-05  Score=71.08  Aligned_cols=31  Identities=23%  Similarity=0.253  Sum_probs=29.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            5999999999999999999999999999875

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.13  E-value=6.1e-06  Score=60.50  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=56.5

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEE
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA  148 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~  148 (352)
                      ..+|+|+|||+|.+|+++|..|++.+.+++++.+++.....               ..++...  ..+.+++..  +.  
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~~~~--~~i~~~~~~--~~--   88 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESLQQV--PEITKFDPT--TR--   88 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSEEEE--CCEEEEETT--TT--
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccceec--CCeeEEecC--CC--
Confidence            47899999999999999999999999998887766543221               1123333  236677632  22  


Q ss_pred             EEEcCCCCEEE-cCEEEEc
Q 018652          149 AVKLEDGSTID-ADTIVIG  166 (352)
Q Consensus       149 ~v~~~~g~~i~-~D~vi~a  166 (352)
                      .+.+.||+.+. .|.||+|
T Consensus        89 ~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          89 EIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEEETTTEEECCCSEEEEC
T ss_pred             EEEEcCCCEEeCCCEEEEC
Confidence            57899999887 7999987

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.06  E-value=6.6e-10  Score=94.72  Aligned_cols=93  Identities=10%  Similarity=0.049  Sum_probs=58.8

Q ss_pred             CCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 018652           12 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV   91 (352)
Q Consensus        12 ~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~   91 (352)
                      ...+.+..++..++.||+||||||+.+.. +..++....+......   ...+......+++++|+|+|++|+|+|..|+
T Consensus       125 ~~~~~~~~~~~~~~~~d~vviAtG~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~  200 (233)
T d1djqa3         125 LGQKPMTADDVLQYGADKVIIATGASECT-LWNELKARESEWAEND---IKGIYLIGDAEAPRLIADATFTGHRVAREIE  200 (233)
T ss_dssp             CSCCCCCHHHHHTSCCSEEEECCCEECCH-HHHHHHHTTHHHHHTT---CCEEEECGGGTSCCCHHHHHHHHHHHHHTTT
T ss_pred             cccccccchhhhhhccceeeeccCCCccc-ccccccccccccchhh---hhhhhhccccCCceeEecCchHHHHHHHHHH
Confidence            33334444444568999999999998653 2222211111111000   0000011135688999999999999999999


Q ss_pred             hCCCcEEEEecCCcccc
Q 018652           92 GWKLDTTIIFPENHLLQ  108 (352)
Q Consensus        92 ~~g~~Vtvv~~~~~~~~  108 (352)
                      +.|.+|+++++++.++.
T Consensus       201 ~~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         201 EANPQIAIPYKRETIAW  217 (233)
T ss_dssp             SSCTTSCCCCCCCCCCT
T ss_pred             hcCCceEEEEecccccc
Confidence            99999999999876643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.05  E-value=2.6e-07  Score=78.14  Aligned_cols=99  Identities=18%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccccc----------CHHHHHHHHHHHHhCCcEEEcCCeEEE
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKGASIKN  138 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~----------~~~~~~~l~~~l~~~gV~~~~~~~v~~  138 (352)
                      ...++|+|||+|+.|+.+|..|+++|.+|+++++++++.....          ...........+.+.+.....    ..
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  122 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE----SQ  122 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT----CE
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee----ee
Confidence            4678999999999999999999999999999998876532110          012222233333322111110    01


Q ss_pred             EEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCCchh
Q 018652          139 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP  175 (352)
Q Consensus       139 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  175 (352)
                      +... ..   .+...+..++.+|.+|+|||..+....
T Consensus       123 ~~~~-~~---~~~~~~~~~~~~d~vviAtG~~~~~~~  155 (233)
T d1djqa3         123 LALG-QK---PMTADDVLQYGADKVIIATGASECTLW  155 (233)
T ss_dssp             EECS-CC---CCCHHHHHTSCCSEEEECCCEECCHHH
T ss_pred             eecc-cc---cccchhhhhhccceeeeccCCCccccc
Confidence            1100 00   112223345789999999999886543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=3.1e-06  Score=71.02  Aligned_cols=91  Identities=12%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC-------CcEEEEecCCcccc---------cccCHHHHHHHHHHHHhCCcEEEcCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWK-------LDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKGA  134 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g-------~~Vtvv~~~~~~~~---------~~~~~~~~~~l~~~l~~~gV~~~~~~  134 (352)
                      +.+|+|||+|++|+.+|..|+++|       .+|||+++.+.+-.         ......+.+.....+.+.|++++++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            468999999999999999999987       47999999875422         11234556667777888999999987


Q ss_pred             eEEEEEecCCCcEEEEEcCCCCEEEcCEEEEccCCCCC
Q 018652          135 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT  172 (352)
Q Consensus       135 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  172 (352)
                      .+....          ..+ .-...+|.+++++|..+.
T Consensus        82 ~v~~~~----------~~~-~~~~~~~~v~~atGa~~~  108 (239)
T d1lqta2          82 VVGEHV----------QPG-ELSERYDAVIYAVGAQSR  108 (239)
T ss_dssp             CBTTTB----------CHH-HHHHHSSEEEECCCCCEE
T ss_pred             Eecccc----------chh-hhhccccceeeecCCCcc
Confidence            542110          000 012468999999998654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.86  E-value=1.6e-05  Score=66.18  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=32.2

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+|+|+|||+|.+|+++|..+++.+.+++++.+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            478999999999999999999999999988877653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.72  E-value=0.00076  Score=59.40  Aligned_cols=32  Identities=25%  Similarity=0.436  Sum_probs=27.8

Q ss_pred             CeEEEECCChHHHHHHHHHHh----CCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~----~g~~Vtvv~~~  103 (352)
                      -.|+|||+|..|+-.|..+++    .|.+|.|+++.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            469999999999999988864    69999999965

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=3.1e-06  Score=74.47  Aligned_cols=37  Identities=24%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhC--CCcEEEEecCCcc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL  106 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtvv~~~~~~  106 (352)
                      ...+|+|||+|+.|+.+|..|+++  |.+|+++++.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            356799999999999999999864  8999999988543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.68  E-value=0.00028  Score=62.59  Aligned_cols=32  Identities=31%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      -.++|||+|..|+-+|..|++.|.+|.|++++
T Consensus         5 yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           5 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence            36999999999999999999999999999975

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=4.3e-05  Score=57.24  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             cEEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCccc
Q 018652          287 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  350 (352)
Q Consensus       287 ~~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~~  350 (352)
                      .|.++.++  +++|+|+++++..++++..... +|+.+.++++ .. ++.|||++|+++.|++++++.+
T Consensus        52 G~~Kli~d~~~~~ilGa~ivG~~A~elI~~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~~~~~~  120 (123)
T d1v59a3          52 GFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKA  120 (123)
T ss_dssp             CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHHSCC
T ss_pred             EEEEEEEECCCCEEEEEEEEchHHHHHHHHHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHHHHcCCC
Confidence            36666554  5899999999999999886655 5699999988 33 6899999999999999988765

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2e-05  Score=65.24  Aligned_cols=39  Identities=23%  Similarity=0.428  Sum_probs=35.7

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCC
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR   40 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~   40 (352)
                      +++++|++||.++++|+++||+++.||+||+|||+.|..
T Consensus       101 ~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~  139 (213)
T d1m6ia1         101 LTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPN  139 (213)
T ss_dssp             EETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEEC
T ss_pred             EeCCEEEEeeccCceeeeccceeeccceEEEeeeeecch
Confidence            567899999999999999999999999999999988654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=4.7e-05  Score=53.99  Aligned_cols=80  Identities=18%  Similarity=0.186  Sum_probs=55.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEE
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA  149 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~  149 (352)
                      ++|+++|+|.|-+|+.+|..|.++|.+|++++.+......           +.+ +.++.+.++.       .       
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~~~-------~-------   57 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHTGS-------L-------   57 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEESB-------C-------
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceeecc-------c-------
Confidence            5789999999999999999999999999999876532211           111 1234443321       0       


Q ss_pred             EEcCCCCEEEcCEEEEccCCCCCchhhhh
Q 018652          150 VKLEDGSTIDADTIVIGIGAKPTVSPFER  178 (352)
Q Consensus       150 v~~~~g~~i~~D~vi~a~G~~p~~~~~~~  178 (352)
                         .....-.+|.+|+++|..++.++++.
T Consensus        58 ---~~~~~~~~d~vi~SPGi~~~~~~~~~   83 (93)
T d2jfga1          58 ---NDEWLMAADLIVASPGIALAHPSLSA   83 (93)
T ss_dssp             ---CHHHHHHCSEEEECTTSCTTSHHHHH
T ss_pred             ---chhhhccCCEEEECCCCCCCCHHHHH
Confidence               00012367999999999998877654

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.31  E-value=0.00012  Score=54.80  Aligned_cols=64  Identities=19%  Similarity=0.131  Sum_probs=52.2

Q ss_pred             cEEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCccc
Q 018652          287 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  350 (352)
Q Consensus       287 ~~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~~  350 (352)
                      .|.++.++  +++|+|+++++.+++++..... +++++.++++ .+ .+.||+++|++..|++++.+++
T Consensus        52 G~vKlv~d~~t~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~  120 (124)
T d3lada3          52 GFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHA  120 (124)
T ss_dssp             CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCC
T ss_pred             eEEEEEEECCCCEEEEEEEEcccHHHHHHHHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHHHhcCCC
Confidence            36666654  5899999999999999876554 5699999988 33 6899999999999999988764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.30  E-value=0.0009  Score=57.03  Aligned_cols=101  Identities=21%  Similarity=0.214  Sum_probs=67.4

Q ss_pred             CCCeEEEECCChHHHHHHHHHHh-CCCcEEEEecCCcccccc-----------c---C----------------------
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLLQRL-----------F---T----------------------  112 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~-~g~~Vtvv~~~~~~~~~~-----------~---~----------------------  112 (352)
                      ....|+|||+|+.|+.+|..|++ .|.+|+++++++.+-...           .   .                      
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            35679999999999999999987 599999999875431100           0   0                      


Q ss_pred             --HHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEEEc--------------CCCCEEEcCEEEEccCCCC
Q 018652          113 --PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--------------EDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       113 --~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v~~--------------~~g~~i~~D~vi~a~G~~p  171 (352)
                        ......+.+..+..++.+..++.+..+... ++++..+..              .++..+.++.++.++|...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCcceeeeec-CCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence              012233344455667888888877776543 334333321              1235789999999999764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00013  Score=63.60  Aligned_cols=63  Identities=21%  Similarity=0.331  Sum_probs=46.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccc----------------cCHHHHHHHHHHHHhCCcEEEc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------FTPSLAQRYEQLYQQNGVKFVK  132 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~----------------~~~~~~~~l~~~l~~~gV~~~~  132 (352)
                      +..||+|||+|..|+-+|..|++.|.+|+|++.++++-.+.                +.......+.+.+++.|+++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~   82 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAK   82 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHcCCccee
Confidence            45789999999999999999999999999999987764321                1111122455667777876653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.27  E-value=0.00013  Score=63.89  Aligned_cols=39  Identities=23%  Similarity=0.382  Sum_probs=35.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  109 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~  109 (352)
                      .|+|+|||+|++|+-+|..|++.|.+|+|+++++++...
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~   40 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN   40 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence            689999999999999999999999999999999877553

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.24  E-value=0.00013  Score=61.10  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=32.5

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ...++|+|||+|..|+-+|..|+++|.+|+|+++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            45679999999999999999999999999999975

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.18  E-value=0.00014  Score=54.25  Aligned_cols=63  Identities=11%  Similarity=0.013  Sum_probs=50.6

Q ss_pred             EEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCccc
Q 018652          288 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  350 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~~  350 (352)
                      +.++.++  +++|+|+++++.++.++..... +++.+.++++ .+ .+.||+++|+++.|++++.+.+
T Consensus        53 ~vklv~d~~t~~ILG~~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~  120 (123)
T d1lvla3          53 FVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHA  120 (123)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTCC
T ss_pred             heeeeeecccccceEEEEEeCchhhHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHHHHcCCC
Confidence            5555554  4899999998999999876655 5689999888 33 6899999999999999887754

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.15  E-value=0.00021  Score=52.92  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=48.5

Q ss_pred             EEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCChhh--hcCCCchHHHHHHHHhcCC
Q 018652          288 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKAK--LQQASSVEEALEIARAALP  347 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~~~  347 (352)
                      |.++.++  +++|+|+++++.++.++..... +++.+.++++..  ++.||+++|+++.|++.+.
T Consensus        53 ~vKlv~d~~~~~ilGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~aa~~l~  117 (118)
T d1xdia2          53 FVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM  117 (118)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHC
T ss_pred             heEEEEecCCCceEEEEEEcCcHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHHh
Confidence            5555554  4899999999999999876554 568999998833  7999999999999998764

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.15  E-value=0.00018  Score=53.73  Aligned_cols=63  Identities=14%  Similarity=0.155  Sum_probs=51.0

Q ss_pred             EEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCccc
Q 018652          288 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA  350 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~~  350 (352)
                      |.++.++  +++|+|+++++..+.++..... +++.+.++++ .. ...||+++|+++.|++++.+.+
T Consensus        53 ~~Klv~d~~~~~ilG~~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~  120 (123)
T d1dxla3          53 LVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKP  120 (123)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSCC
T ss_pred             eEEEEEECCCCEEEEEEEehhhHHHHHHHHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHHHcCCC
Confidence            5566554  4899999999999999886655 5699999988 33 6899999999999999877654

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.09  E-value=0.00034  Score=51.48  Aligned_cols=61  Identities=7%  Similarity=0.030  Sum_probs=48.3

Q ss_pred             cEEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCChhh--hcCCCchHHHHHHHHhcCC
Q 018652          287 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKAK--LQQASSVEEALEIARAALP  347 (352)
Q Consensus       287 ~~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~~~  347 (352)
                      .|.++.++  +++|+|+++++.++.++..... +++.+.++++..  .+.||+++|+++.|++.++
T Consensus        50 G~vKli~~~~~~~iLG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~al  115 (115)
T d1ebda3          50 GFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVAL  115 (115)
T ss_dssp             CEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHTC
T ss_pred             EEEEEEEeCCcceEEEEEEEcCCHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHhC
Confidence            35555554  5899999999999999886655 568999988833  7899999999999987653

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.07  E-value=0.00019  Score=53.90  Aligned_cols=62  Identities=10%  Similarity=0.066  Sum_probs=50.1

Q ss_pred             EEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCCh-hh-hcCCCchHHHHHHHHhcCCcc
Q 018652          288 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPVE  349 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~e~~~~~~~~~~~~  349 (352)
                      |.++.++  +|+|+|+++++.++.++..... +++++.++++ .+ .+.||+++|++.+|++.+.+.
T Consensus        53 ~~Kli~d~~~g~iLGa~ivG~~A~ElI~~~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~  119 (128)
T d1ojta3          53 FTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGT  119 (128)
T ss_dssp             EEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHTC
T ss_pred             eEEEEEeCCCCeEEEEEEEhhhHHHHHHHHHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHHcCC
Confidence            5565554  5899999999999999886655 4699999988 33 789999999999999887654

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.97  E-value=0.0015  Score=49.72  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=64.5

Q ss_pred             HHHHHHh---hcCCCeEEEEC-CCh---------HHHHHHHHHHhCC--CcEEEEecCCcccc-cccCHHHHHHHHHHHH
Q 018652           61 ADALISS---LEKAKKVVVVG-GGY---------IGMEVAAAAVGWK--LDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQ  124 (352)
Q Consensus        61 ~~~~~~~---~~~~~~vvVvG-gG~---------~g~e~A~~l~~~g--~~Vtvv~~~~~~~~-~~~~~~~~~~l~~~l~  124 (352)
                      ...+++.   +..+.++++.- +++         +++.++..|+++|  .++.++...+.... ..+.+.+.+.+.+.++
T Consensus        20 ~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (141)
T d1fcda2          20 TAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTE   99 (141)
T ss_dssp             HHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTS
T ss_pred             HHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHH
Confidence            4444443   44566776642 322         3555556677776  45677665543211 1223456677777788


Q ss_pred             hCCcEEEcCCe--EEEEEecCCCcEEEEEcCCCCEEEcCEEEEcc
Q 018652          125 QNGVKFVKGAS--IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI  167 (352)
Q Consensus       125 ~~gV~~~~~~~--v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~  167 (352)
                      ++||+++.+..  +.+++..  ..  .+++.+|+++++|++++..
T Consensus       100 ~~~I~~~~~~~~~~v~vd~~--~~--~~~~~~Ge~v~yD~l~vvP  140 (141)
T d1fcda2         100 NAMIEWHPGPDSAVVKVDGG--EM--MVETAFGDEFKADVINLIP  140 (141)
T ss_dssp             SCSEEEECSSTTCEEEEEET--TT--EEEETTCCEEECSEEEECC
T ss_pred             hcCceeeecCCceEEeecCC--cE--EEEeCCCcEEeeeEEEeCC
Confidence            89999998764  6666632  22  5678999999999998854

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00084  Score=48.97  Aligned_cols=40  Identities=8%  Similarity=0.157  Sum_probs=34.1

Q ss_pred             CcEEEEEEECCEEEEEEeecCCHHHhhHHHHHHhCCCCCCh
Q 018652          286 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK  326 (352)
Q Consensus       286 ~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (352)
                      +|-+.||+++++|||+++ .|--.++...|++|+.+...++
T Consensus        84 gKGVIFYLrd~~VVGVLL-WNvFnrm~iAR~iI~~~~~~~D  123 (131)
T d1m6ia3          84 GKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHED  123 (131)
T ss_dssp             CEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCSC
T ss_pred             CceEEEEecCCcEEEEEE-ecccCccHHHHHHHHcCCccch
Confidence            467899999999999997 6877889999999987776665

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.84  E-value=0.0008  Score=53.38  Aligned_cols=34  Identities=21%  Similarity=-0.000  Sum_probs=31.3

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++.|||+|..|.-+|..|++.|++|+++.|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789999999999999999999999999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00049  Score=59.52  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCccccc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR  109 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~  109 (352)
                      .++|||+|++|+-+|..|++.|.+|+|+++++++...
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            6899999999999999999999999999999877654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.70  E-value=0.0036  Score=45.47  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=31.8

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|||+|.+|..-|..|.+.|.+|+++.+.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            6899999999999999999999999999998764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.57  E-value=0.00096  Score=58.39  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CeEEEECCChHHHHHHHHHH-----hCCCcEEEEecCCccc
Q 018652           72 KKVVVVGGGYIGMEVAAAAV-----GWKLDTTIIFPENHLL  107 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~-----~~g~~Vtvv~~~~~~~  107 (352)
                      -.|+|||||++|+-+|..|+     +.|.+|+|+++.+.+.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            46999999999999999996     5799999999887553

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00078  Score=51.89  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+++++|||||.+|.+-|..|.+.|.+|||+.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999999754

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.44  E-value=1.4e-06  Score=74.69  Aligned_cols=18  Identities=17%  Similarity=0.364  Sum_probs=13.2

Q ss_pred             CeEEecCeEEEccCCCCC
Q 018652           22 GKLLKYGSLIVATGCTAS   39 (352)
Q Consensus        22 g~~~~yd~lViAtG~~~~   39 (352)
                      .+.+++|++|||||++|.
T Consensus       136 ~~~i~a~~iiIATGs~P~  153 (259)
T d1onfa1         136 EEILEGRNILIAVGNKPV  153 (259)
T ss_dssp             ----CBSSEEECCCCCBC
T ss_pred             eEEEeeeeEEEecCCCCc
Confidence            356999999999999984

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.38  E-value=0.0012  Score=52.39  Aligned_cols=39  Identities=28%  Similarity=0.503  Sum_probs=35.4

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCC
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR   40 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~   40 (352)
                      +++++|+.++.+...+.+++|++++||.||+|||..|+.
T Consensus        73 ~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~  111 (183)
T d1d7ya1          73 LLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA  111 (183)
T ss_dssp             EETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             EEeccccccccccceeEecCCcEeeeeeEEEEEEEEccc
Confidence            467889999999999999999999999999999998753

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.38  E-value=0.0016  Score=51.10  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .|+|+|+|+|.+|..+|..|.+.|.+|+++.|..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            6899999999999999999999999999998874

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0027  Score=50.91  Aligned_cols=38  Identities=26%  Similarity=0.458  Sum_probs=34.1

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccc
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ  108 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~  108 (352)
                      -++|.|||+|.+|..+|..++..|.+|+++++++..+.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            37999999999999999999999999999998875544

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.91  E-value=0.0014  Score=51.01  Aligned_cols=79  Identities=22%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             ccCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCCCCCCCCCC--------------CCcEEEecCHHHHHHHHHh
Q 018652            2 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY--------------LPGVHYIRDVADADALISS   67 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~~~~~~g~~--------------~~~v~~~~~~~~~~~~~~~   67 (352)
                      +++++|+.+|...+.+..+ +.++.||.||+|+|..|..+....|..              .++++.+.+.         
T Consensus        70 ~~~~~v~~i~~~~~~~~~~-~~~i~~D~li~a~G~~~~~~~~~~gl~~~~~i~v~~~~~t~~~~i~aiGD~---------  139 (167)
T d1xhca1          70 RLAEEAKLIDRGRKVVITE-KGEVPYDTLVLATGAPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDC---------  139 (167)
T ss_dssp             ECSCCEEEEETTTTEEEES-SCEEECSEEEECCCEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGG---------
T ss_pred             eeecccccccccccccccc-ccccccceeEEEEEecCCchhhhcCceeCCceeeccccEecCCCeEEeeec---------
Confidence            4678899999988877654 456999999999998764322111111              1233222110         


Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHh
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVG   92 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~   92 (352)
                        ...+..++|++..|++.|..+++
T Consensus       140 --~~~~~~~~~~~~~a~~~a~~~a~  162 (167)
T d1xhca1         140 --AEYSGIIAGTAKAAMEQARVLAD  162 (167)
T ss_dssp             --EEBTTBCCCSHHHHHHHHHHHHH
T ss_pred             --ccCCCeEEChHHHHHHHHHHHHH
Confidence              01123467888899998888765

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0033  Score=45.88  Aligned_cols=54  Identities=9%  Similarity=0.010  Sum_probs=42.9

Q ss_pred             cEEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCChhh--hcCCCchHHHHH
Q 018652          287 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKAK--LQQASSVEEALE  340 (352)
Q Consensus       287 ~~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~e~~~  340 (352)
                      .|.++.++  +++|+|++++++.+.++..... +++++.++++..  .+.||+++|++.
T Consensus        54 g~~k~i~~~~~~~ilG~~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  112 (115)
T d3grsa3          54 CVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELV  112 (115)
T ss_dssp             EEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             eeEEEEEecCCceEEEEEEeccCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHHH
Confidence            35555554  6899999999999999886655 568999888833  799999999875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.72  E-value=0.0035  Score=49.99  Aligned_cols=38  Identities=18%  Similarity=0.214  Sum_probs=33.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      +-++|.|||+|.+|..+|..++..|.+|+++++++.-+
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l   40 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGI   40 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            45789999999999999999999999999999876544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0062  Score=47.03  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=31.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ||+|+|+|.+|.-+|..|++.|.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            699999999999999999999999999998764

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.53  E-value=0.0076  Score=44.14  Aligned_cols=54  Identities=7%  Similarity=0.023  Sum_probs=42.1

Q ss_pred             EEEEEE--ECCEEEEEEeecCCHHHhhHHHH-HHhCCCCCCh-hh-hcCCCchHHHHHH
Q 018652          288 IATFWI--DSGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEI  341 (352)
Q Consensus       288 ~~~~~~--~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~e~~~~  341 (352)
                      +.++.+  ++++|+|++++++.++++.+... +++++.++++ .+ .+.|||++|++..
T Consensus        59 ~~kli~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~  117 (119)
T d1onfa3          59 YLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT  117 (119)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHH
T ss_pred             eEEEEEecCCCcEEEEEEeCCCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHh
Confidence            444444  35899999999999999986655 5689998888 33 7899999999863

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0055  Score=44.63  Aligned_cols=53  Identities=8%  Similarity=-0.069  Sum_probs=41.8

Q ss_pred             EEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCCh-hh-hcCCCchHHHHH
Q 018652          288 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALE  340 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~e~~~  340 (352)
                      +.++.++  +++|+|++++++++.++..... +++++.++++ .+ .+.||+++|++.
T Consensus        55 ~~k~v~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  112 (115)
T d1gesa3          55 RMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV  112 (115)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             eEEEEEecCCcEEEEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHHH
Confidence            4555554  6899999999999999986665 4589998888 33 799999999865

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=95.46  E-value=0.007  Score=53.22  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=30.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      .|+|||+|+.|+-+|..|++.|.+|.|++++.+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            589999999999999999999999999998743

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=3.8e-05  Score=63.31  Aligned_cols=76  Identities=18%  Similarity=0.190  Sum_probs=48.9

Q ss_pred             CCCeEEecCeEEEccCCCCCCCCCCCCCCCC-----cEEEecC-HHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhC
Q 018652           20 NSGKLLKYGSLIVATGCTASRFPEKIGGYLP-----GVHYIRD-VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW   93 (352)
Q Consensus        20 ~~g~~~~yd~lViAtG~~~~~~~~~~g~~~~-----~v~~~~~-~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~   93 (352)
                      .++..+.++++++|||+.|. .|.+|+.+.-     ++.+... ....+..  .....+++.++|+|.+|+|+|..+.+.
T Consensus       123 ~~~~~~~~~~~iiatG~~p~-ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~--~~t~~~~i~~iG~g~~g~ela~~~~~~  199 (217)
T d1gesa1         123 VNGETITADHILIATGGRPS-HPREPANDNINLEAAGVKTNEKGYIVVDKY--QNTNIEGIYAVGDNTGAVELTPVAVAA  199 (217)
T ss_dssp             ETTEEEEEEEEEECCCEEEC-CCEEESCTTSCHHHHTCCBCTTSCBCCCTT--SBCSSTTEEECSGGGTSCCCHHHHHHH
T ss_pred             CCCceeeeeeeeeecCcccc-CCCCCCcCCcccccccEEEcCCccEeeCch--hccCCCcEEEECCCccHHHHHHHHHHH
Confidence            35678999999999999986 4655543211     1111100 0000000  012346899999999999999999999


Q ss_pred             CCcEE
Q 018652           94 KLDTT   98 (352)
Q Consensus        94 g~~Vt   98 (352)
                      |.+|+
T Consensus       200 G~~v~  204 (217)
T d1gesa1         200 GRRLS  204 (217)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88775

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.25  E-value=0.0063  Score=47.32  Aligned_cols=38  Identities=29%  Similarity=0.377  Sum_probs=32.9

Q ss_pred             cCCceEEEECCCcEEEeCCCeEEecCeEEEccCCCCCC
Q 018652            3 YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR   40 (352)
Q Consensus         3 ~~~~V~~id~~~~~V~~~~g~~~~yd~lViAtG~~~~~   40 (352)
                      ...++..++...+.+.+.+++.++||+||+|||..|+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~  110 (186)
T d1fcda1          73 VHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIY  110 (186)
T ss_dssp             ECCCEEECCTTTTEEEETTSCEEECSEEEECCCEEECC
T ss_pred             eeeeeEeeeeccceeecccceeeccceEEEEeccccch
Confidence            34677888888899999999999999999999998753

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=95.22  E-value=0.0089  Score=52.59  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=30.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++|||+|..|+-+|..|++.|.+|+|++++.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999999999999999999999874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.11  E-value=0.018  Score=39.66  Aligned_cols=75  Identities=23%  Similarity=0.164  Sum_probs=53.7

Q ss_pred             CeEEEECCChHHH-HHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCcEEEE
Q 018652           72 KKVVVVGGGYIGM-EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV  150 (352)
Q Consensus        72 ~~vvVvGgG~~g~-e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~~~~v  150 (352)
                      .|+-+||-|-+|+ -+|..|.++|.+|+--++..       .     ...+.|++.|++++.+.....            
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-------~-----~~t~~L~~~Gi~i~~gh~~~~------------   57 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-------T-----ERTAYLRKLGIPIFVPHSADN------------   57 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-------C-----HHHHHHHHTTCCEESSCCTTS------------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-------C-----hhHHHHHHCCCeEEeeecccc------------
Confidence            4688899777777 57999999999999876543       1     233458999999987642111            


Q ss_pred             EcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          151 KLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       151 ~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                            .-.+|.||++++...+.+.+
T Consensus        58 ------i~~~d~vV~SsAI~~~npel   77 (89)
T d1j6ua1          58 ------WYDPDLVIKTPAVRDDNPEI   77 (89)
T ss_dssp             ------CCCCSEEEECTTCCTTCHHH
T ss_pred             ------cCCCCEEEEecCcCCCCHHH
Confidence                  12478999999988765544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.01  E-value=0.01  Score=44.20  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=30.5

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      |+++|+|.|..|..+|..|.+.|.+|++++.++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            579999999999999999999999999998764

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.95  E-value=0.0058  Score=45.76  Aligned_cols=46  Identities=11%  Similarity=0.042  Sum_probs=38.9

Q ss_pred             ECCEEEEEEeecCCHHHhhHHHH-HHhCCCCCCh-h-hhcCCCchHHHH
Q 018652          294 DSGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-A-KLQQASSVEEAL  339 (352)
Q Consensus       294 ~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~e~~  339 (352)
                      ++++|+|+++++.++.++++... +++++.++++ . ..+.||+++|++
T Consensus        65 ~~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~  113 (133)
T d1h6va3          65 DNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIF  113 (133)
T ss_dssp             GTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGG
T ss_pred             CcccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHH
Confidence            36899999999999999986655 5699999998 3 379999999987

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.87  E-value=0.011  Score=43.91  Aligned_cols=54  Identities=13%  Similarity=0.115  Sum_probs=42.5

Q ss_pred             EEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCCh-hh-hcCCCchHHHHHH
Q 018652          288 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEI  341 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~e~~~~  341 (352)
                      +.++..+  +++|+|+++++.++++++.... +++++.++++ .. ++.||+++|++..
T Consensus        54 ~~klv~~~~~g~iLGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~  112 (128)
T d1feca3          54 MVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCS  112 (128)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred             eEEEeecCCCCceeEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHH
Confidence            4455443  6899999999999999986655 5689998888 33 7899999998855

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.79  E-value=0.0025  Score=52.35  Aligned_cols=27  Identities=30%  Similarity=0.396  Sum_probs=23.9

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEE
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTI   99 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtv   99 (352)
                      ||+|||+|.+|+-+|..|++.|.+|++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v   28 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQ   28 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceE
Confidence            699999999999999999999876443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.74  E-value=0.014  Score=43.27  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      +|+|+|+|..|..+|..|.+.|.+|++++.++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            68999999999999999999999999998754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.57  E-value=0.053  Score=45.63  Aligned_cols=59  Identities=25%  Similarity=0.492  Sum_probs=43.6

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  133 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~  133 (352)
                      +.+||+|.|| |++|..++..|.+.|.+|+++.|.+...    ..... .....+...+++++.+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~----~~~~~-~~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS----NIDKV-QMLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS----CHHHH-HHHHHHHTTTCEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc----chhHH-HHHhhhccCCcEEEEe
Confidence            4567999995 9999999999999999999998865322    22222 2334567788888754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.49  E-value=0.017  Score=40.40  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=55.5

Q ss_pred             hcCCCeEEEECCChHHHHH-HHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCCc
Q 018652           68 LEKAKKVVVVGGGYIGMEV-AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR  146 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~-A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~~  146 (352)
                      +...+++-+||-|-+|+.. |..|.++|.+|+-.+....            ...+.+.+.|+++..+.....+       
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~------------~~~~~L~~~Gi~v~~g~~~~~i-------   65 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG------------VVTQRLAQAGAKIYIGHAEEHI-------   65 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS------------HHHHHHHHTTCEEEESCCGGGG-------
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC------------hhhhHHHHCCCeEEECCccccC-------
Confidence            4567899999988788765 9999999999998775421            1224567789998876521111       


Q ss_pred             EEEEEcCCCCEEEcCEEEEccCCCCCchhh
Q 018652          147 VAAVKLEDGSTIDADTIVIGIGAKPTVSPF  176 (352)
Q Consensus       147 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~  176 (352)
                                 -..|.||++++...+...+
T Consensus        66 -----------~~~d~vV~S~AI~~~npel   84 (96)
T d1p3da1          66 -----------EGASVVVVSSAIKDDNPEL   84 (96)
T ss_dssp             -----------TTCSEEEECTTSCTTCHHH
T ss_pred             -----------CCCCEEEECCCcCCCCHHH
Confidence                       1358899999987755443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.24  E-value=0.012  Score=46.86  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=31.4

Q ss_pred             ccCCceEEEECCCcEEEe---CCCe--EEecCeEEEccCCCCCC
Q 018652            2 IYQDPVTSIDIEKQTLIT---NSGK--LLKYGSLIVATGCTASR   40 (352)
Q Consensus         2 ~~~~~V~~id~~~~~V~~---~~g~--~~~yd~lViAtG~~~~~   40 (352)
                      +++++|++||++++.|++   .+|+  .++||+||+|+|+.|..
T Consensus        74 ~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          74 FSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             EETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             EEeeceeeEeeccccceeeecccccccccccceeeEeecceeec
Confidence            578899999999998864   3443  57999999999987653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.05  Score=39.33  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=30.8

Q ss_pred             CCCeEEEECCCh-----------HHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVGGGY-----------IGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGgG~-----------~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ..++|+|+|+|+           .+..++..|++.|.++.++..++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            468999999985           588889999999999999987743

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.042  Score=42.18  Aligned_cols=38  Identities=26%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           67 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        67 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+-.+|+++|+|-|.+|-.+|..++..|.+|++.+..+
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            34589999999999999999999999999999998753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.14  Score=38.62  Aligned_cols=54  Identities=9%  Similarity=0.082  Sum_probs=40.6

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  133 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~  133 (352)
                      ..+++|+|.|..|..++..|.+.|.++++++..+.         -.....+.+...|+.++.+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~---------~~~~~~~~~~~~~~~vi~G   56 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPE---------DDIKQLEQRLGDNADVIPG   56 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH---------HHHHHHHHHHCTTCEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch---------hHHHHHHHhhcCCcEEEEc
Confidence            35799999999999999999999999999976542         1222233445668888765

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.028  Score=37.46  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      |+|.|+|||..|..++....++|.++.++.+.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5789999999999999999999999999987653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.59  E-value=0.026  Score=46.31  Aligned_cols=38  Identities=24%  Similarity=0.503  Sum_probs=31.5

Q ss_pred             CccCCceEEEECCCc---EEEeCCCeEEecCeEEEccCCCC
Q 018652            1 MIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTA   38 (352)
Q Consensus         1 ~~~~~~V~~id~~~~---~V~~~~g~~~~yd~lViAtG~~~   38 (352)
                      ++++++|++|+.++.   .|.+++|+.+.+|+||+|||...
T Consensus       127 i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         127 IRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  167 (251)
T ss_dssp             EECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             ccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCcc
Confidence            357889999987654   46788999999999999999874

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=93.57  E-value=0.034  Score=48.68  Aligned_cols=32  Identities=16%  Similarity=0.136  Sum_probs=30.3

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++|||+|..|+-+|..|++.|.+|.|++++.
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            58999999999999999999999999999885

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.058  Score=38.63  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ...+|.|+|||..|..+|....++|.++.++++++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            346799999999999999999999999999997743

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.39  E-value=0.054  Score=43.22  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=29.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      +|.|||.|++|+-+|..|++.|.+|+.++.++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999998764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.24  E-value=0.026  Score=44.73  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=30.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++++|+|+|..|.-+|..|++.|.+|+++.|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            579999999999999999999999999987653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.01  E-value=0.067  Score=41.15  Aligned_cols=35  Identities=40%  Similarity=0.544  Sum_probs=32.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++.+|+|+|+|..|...+..+.++|.+|++++.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            46799999999999999999999999999998754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.93  E-value=0.058  Score=41.23  Aligned_cols=38  Identities=26%  Similarity=0.232  Sum_probs=34.5

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           67 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        67 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+-.+|+++|+|-|+.|--+|..++.+|.+|++.+..|
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            35589999999999999999999999999999997664

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.83  E-value=0.14  Score=42.38  Aligned_cols=58  Identities=24%  Similarity=0.426  Sum_probs=42.5

Q ss_pred             CCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEc
Q 018652           71 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK  132 (352)
Q Consensus        71 ~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~  132 (352)
                      .+||+|.|| |++|-.++..|.+.|.+|+.+.|.+....   .+..... ...+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~~-~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQL-LESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHH-HHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHHH-HHhhccCCcEEEE
Confidence            578999995 99999999999999999999998764332   2222222 3445667787764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.77  E-value=0.064  Score=41.88  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=32.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ++-+|+|+|+|..|...+....++|.+|++++.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            467999999999999999999999999999987653

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=92.72  E-value=0.069  Score=40.29  Aligned_cols=35  Identities=26%  Similarity=0.256  Sum_probs=31.6

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .-++|.||| .|.+|.-+|..|.+.|++|+++.+..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            347999999 69999999999999999999998764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.001  Score=52.85  Aligned_cols=49  Identities=24%  Similarity=0.393  Sum_probs=34.1

Q ss_pred             EEecCeEEEccCCCCCCCCCCCCCCCCcEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHH-HHHHHhCC
Q 018652           24 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEV-AAAAVGWK   94 (352)
Q Consensus        24 ~~~yd~lViAtG~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~-A~~l~~~g   94 (352)
                      ...||.+|+|||+.|+.+ ..|+                     ...+++++|+|+|..++++ +......|
T Consensus       123 ~~~~d~vilAtG~~~~~~-~~pg---------------------~~~g~~v~vigggd~a~~~~~~~Av~~G  172 (179)
T d1ps9a3         123 LQAFDETILASGIPNRAL-AQPL---------------------IDSGKTVHLIGGCDVAMELDARRAIAQG  172 (179)
T ss_dssp             SCCSSEEEECCCEECCTT-HHHH---------------------HTTTCCEEECGGGTCCSSCCHHHHHHHH
T ss_pred             cccceeEEEeecCCCccc-ccch---------------------hccCCEEEEECCcHhhhhccchhhhhcc
Confidence            468999999999987532 2111                     2358999999999998876 44444444

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.54  E-value=0.22  Score=37.89  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=30.1

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ++|.+||-|..|..+|..|.+.|.+|+++++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            57999999999999999999999999999887

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.13  Score=39.58  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=32.3

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+++|+|+|+|-+|--++..|.+.|.+|+++.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            467999999999999999999999999999987753

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=92.02  E-value=0.075  Score=47.01  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC-CcEEEEecCCc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~  105 (352)
                      -.++|||+|..|+-+|..|++.+ .+|.|+++++.
T Consensus        25 yD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            47999999999999999999988 69999999864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.95  E-value=0.069  Score=41.55  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=28.9

Q ss_pred             eEEEE-CCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVV-GGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVv-GgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ||.|+ |+|.+|..+|..|++.|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58899 569999999999999999999998764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.83  E-value=0.065  Score=41.87  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=28.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      +|.|||+|..|.-+|..|++.|.+|+++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6899999999999999999999999998663

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=91.54  E-value=0.1  Score=39.91  Aligned_cols=32  Identities=25%  Similarity=0.178  Sum_probs=29.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ||.|||.|..|..+|..|.+.|.+|+.++|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            68999999999999999999999999987653

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.52  E-value=0.084  Score=43.41  Aligned_cols=38  Identities=18%  Similarity=0.314  Sum_probs=29.2

Q ss_pred             CccCCceEEEECCCc-----EEEeCCCeEEecCeEEEccCCCC
Q 018652            1 MIYQDPVTSIDIEKQ-----TLITNSGKLLKYGSLIVATGCTA   38 (352)
Q Consensus         1 ~~~~~~V~~id~~~~-----~V~~~~g~~~~yd~lViAtG~~~   38 (352)
                      ++++++|++|.....     .+...++.++.+|+||+|||..+
T Consensus       126 i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         126 ILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS  168 (253)
T ss_dssp             EECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSS
T ss_pred             eecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCccc
Confidence            357889999876443     34455778899999999999874

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=91.34  E-value=0.14  Score=38.17  Aligned_cols=53  Identities=17%  Similarity=0.072  Sum_probs=40.3

Q ss_pred             EEEEEEE--CCEEEEEEeecCCHHHhhHHHH-HHhCCCCCChh-h---hcCCCchHHHHH
Q 018652          288 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDKA-K---LQQASSVEEALE  340 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~---~~~~~~~~e~~~  340 (352)
                      +.++.++  +++|+|+++++++++++...-. +|+.+.++++. .   .+.||+..|.+.
T Consensus        69 ~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~  128 (140)
T d1mo9a3          69 FQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLS  128 (140)
T ss_dssp             EEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHH
T ss_pred             eEEEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHH
Confidence            5566554  6899999999999999876654 56899988873 3   467899887663

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=90.85  E-value=0.1  Score=45.84  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCC-CcEEEEecCCc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~  105 (352)
                      -.++|||+|..|+-+|..|++.+ .+|.|+++++.
T Consensus        18 yD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          18 VDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             EEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            37899999999999999999876 79999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.52  E-value=0.14  Score=39.22  Aligned_cols=38  Identities=26%  Similarity=0.201  Sum_probs=33.3

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           67 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        67 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ...++++|+|+|+|.+|.-.+..++..|.+|.++++++
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            45688999999999999999988888999999888765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=90.51  E-value=0.19  Score=38.34  Aligned_cols=37  Identities=22%  Similarity=0.264  Sum_probs=32.8

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..++.+|+|+|+|.+|+-++..++..|.+|.++++++
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            5678999999999999999999999999998887654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.39  E-value=0.23  Score=38.35  Aligned_cols=37  Identities=24%  Similarity=0.186  Sum_probs=31.4

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652           67 SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  103 (352)
Q Consensus        67 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~  103 (352)
                      ..+++.+|+|+|+|.+|+-.+..++..|. +|.+++++
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            35688999999999999999999999996 57777654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.39  E-value=0.44  Score=35.99  Aligned_cols=31  Identities=16%  Similarity=0.159  Sum_probs=29.2

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      +|-|||-|..|..+|..|.+.|.+|+++++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5889999999999999999999999999877

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=90.11  E-value=0.11  Score=45.22  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      -.++|||+|..|+-+|..|++. .+|.|+++++.
T Consensus        27 YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          27 YDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             ccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            4799999999999999999986 89999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.06  E-value=0.18  Score=38.43  Aligned_cols=38  Identities=18%  Similarity=0.152  Sum_probs=32.9

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           67 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        67 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+++++|+|+|+|.+|+-++..++..|.+|..+.+++
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            35688999999999999999999999999988886653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=89.89  E-value=0.16  Score=38.66  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~  103 (352)
                      ..++++|||+|.+|..++..|...|. +++++.|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            67899999999999999999999997 58887765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.72  E-value=0.21  Score=39.12  Aligned_cols=35  Identities=31%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+|+++|.| +|-+|.++|..|++.|.+|+++.|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            689999999 68999999999999999999998875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.21  Score=39.48  Aligned_cols=37  Identities=27%  Similarity=0.439  Sum_probs=32.6

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCCccc
Q 018652           71 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHLL  107 (352)
Q Consensus        71 ~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  107 (352)
                      .++|+|.| .|.+|-.++..|.+.|.+|+++.|++.-+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            57899999 59999999999999999999999876433

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.2  Score=38.37  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=31.5

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      ..++.+|+|+|+|.+|+-++..+...|. +|.++++++
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            4678899999999999999999999998 577776553

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=89.17  E-value=0.18  Score=37.79  Aligned_cols=35  Identities=29%  Similarity=0.284  Sum_probs=29.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~  104 (352)
                      ..+||+|||+|.+|..+|..|+..+  .++.+++..+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4578999999999999999998876  5799987654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=88.97  E-value=0.22  Score=38.14  Aligned_cols=35  Identities=29%  Similarity=0.242  Sum_probs=30.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      ++++|+|+|+|-.|--++..|.+.|. +|+++.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            67899999999999999999999995 789987753

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=88.60  E-value=0.053  Score=45.84  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=29.2

Q ss_pred             CccCCceEEEECCCcE---EEeCCCeEEecCeEEEccCCC
Q 018652            1 MIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCT   37 (352)
Q Consensus         1 ~~~~~~V~~id~~~~~---V~~~~g~~~~yd~lViAtG~~   37 (352)
                      ++.+++|++|..++..   |.+++| ++.+|+||+|+|..
T Consensus       165 i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~  203 (305)
T d1pj5a2         165 YRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFW  203 (305)
T ss_dssp             EECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGG
T ss_pred             ccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchh
Confidence            3567899999987764   567776 59999999999975

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.60  E-value=0.29  Score=38.03  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=32.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|+|.|.+|-.+|..+...|.+|..+.+.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            57899999999999999999999999999997654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.57  E-value=0.26  Score=35.76  Aligned_cols=36  Identities=14%  Similarity=0.172  Sum_probs=31.2

Q ss_pred             CCCeEEEECCCh-----------HHHHHHHHHHhCCCcEEEEecCCc
Q 018652           70 KAKKVVVVGGGY-----------IGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGgG~-----------~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      ..++|+|+|+|+           .+..++..|++.|.++.++..++.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            568999999985           588889999999999999987754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=88.56  E-value=0.21  Score=38.65  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=31.5

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      .+++++|+|+|+|.+|+-++..+..+|. +|+++++++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCCEEEEECCCccchhheeccccccccccccccccc
Confidence            4578999999999999999999999997 678877654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.3  Score=37.19  Aligned_cols=38  Identities=24%  Similarity=0.122  Sum_probs=32.8

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           67 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        67 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++++|+|+|+|.+|+-.+..++..|.++.++.+.+
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            36788999999999999999999999999988776654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.37  E-value=0.29  Score=41.89  Aligned_cols=38  Identities=16%  Similarity=0.053  Sum_probs=33.5

Q ss_pred             hcCCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           68 LEKAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        68 ~~~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      +.++|+|+|.| +|++|..++..|.+.|.+|..+.+...
T Consensus         5 ~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           5 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hhCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            35789999998 789999999999999999999987653

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.27  E-value=0.68  Score=39.36  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=29.2

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecC
Q 018652           71 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .|||+|.| +|++|-.++..|.+.|.+|+.+.+.
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            37899998 7999999999999999999998653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.20  E-value=0.28  Score=42.02  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=31.5

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..|+|+|+| +|++|-.++..|.+.|.+|+++.|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            468899999 59999999999999999999998864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.14  E-value=0.44  Score=36.64  Aligned_cols=37  Identities=14%  Similarity=0.097  Sum_probs=30.7

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCCc-EEEEecCC
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPEN  104 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtvv~~~~  104 (352)
                      ++++++|+|+|.|.+|+-.+..+...|.+ |.+.++++
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            56789999999999999999999999985 55555543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=88.12  E-value=0.1  Score=43.19  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=29.2

Q ss_pred             ccCCceEEEECCCc--EEEeCCCeEEecCeEEEccCCCC
Q 018652            2 IYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA   38 (352)
Q Consensus         2 ~~~~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~   38 (352)
                      +.+++|+.|+.+++  .|.+++| ++.+|+||+|+|...
T Consensus       169 ~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         169 FEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS  206 (276)
T ss_dssp             ETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             ecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccH
Confidence            56789999997665  6677776 599999999999763

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.04  E-value=0.26  Score=36.90  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=28.0

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~  104 (352)
                      .|||.|||+|.+|..+|..|..++  .++.+++..+
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            478999999999999999988766  4678876543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=87.97  E-value=0.28  Score=37.03  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=30.0

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      +++.+|++|||+|.+|..+|..|...+. ++.+++..+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            3567899999999999999988877663 788887654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.79  E-value=0.61  Score=35.53  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=30.5

Q ss_pred             hcCCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecC
Q 018652           68 LEKAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        68 ~~~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ++++++|+|.|+ |.+|.-+...+...|.+|..+.++
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEEeccccccccccccccccCccccccccc
Confidence            457889999995 999999888888999998877654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=87.64  E-value=0.25  Score=37.97  Aligned_cols=36  Identities=11%  Similarity=0.103  Sum_probs=31.8

Q ss_pred             cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           69 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        69 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ..+++++|+|+|-++--++..|.+.+.+|+++.|..
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            467899999999999999999999889999998763

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.52  E-value=0.17  Score=42.80  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=30.6

Q ss_pred             CccCCceEEEE--CCC--cEEEeCCCeEEecCeEEEccCCC
Q 018652            1 MIYQDPVTSID--IEK--QTLITNSGKLLKYGSLIVATGCT   37 (352)
Q Consensus         1 ~~~~~~V~~id--~~~--~~V~~~~g~~~~yd~lViAtG~~   37 (352)
                      ++++++|+++.  .+.  .+|.+.++.++++|+||+|||..
T Consensus       104 I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l  144 (298)
T d1w4xa1         104 ITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  144 (298)
T ss_dssp             EECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             ccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence            46889999996  332  38999999999999999999964

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.98  E-value=0.32  Score=37.53  Aligned_cols=34  Identities=24%  Similarity=0.178  Sum_probs=29.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++++++|+|+|-++--++..|.+.| +|+|+.|..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            6889999999999999999998777 899887753

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=86.96  E-value=0.16  Score=42.05  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=29.6

Q ss_pred             ccCCceEEEECCCc--EEEeCCCeEEecCeEEEccCCCC
Q 018652            2 IYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA   38 (352)
Q Consensus         2 ~~~~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~~   38 (352)
                      +.+++|++|+.++.  .|.+++| ++.+|+||+|+|...
T Consensus       168 ~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         168 LTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (281)
T ss_dssp             ECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             cCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcc
Confidence            56889999987665  6777777 599999999999863

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=86.92  E-value=0.42  Score=35.48  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC--cEEEEecCCc
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENH  105 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~~  105 (352)
                      +||.|||+|.+|..+|..|...+.  ++.+++..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            579999999999999999988764  7889886654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.70  E-value=0.35  Score=36.16  Aligned_cols=35  Identities=23%  Similarity=0.397  Sum_probs=29.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCC--CcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~  104 (352)
                      .++||.|||+|.+|..+|..|...+  .++.+++..+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            5679999999999999999998866  4688887654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=86.32  E-value=0.44  Score=36.57  Aligned_cols=33  Identities=6%  Similarity=0.064  Sum_probs=30.6

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+|-+||-|..|..+|..|.+.|.+|+++.|.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            578999999999999999999999999998765

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=85.80  E-value=0.54  Score=34.88  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=27.9

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEecCC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPEN  104 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~~  104 (352)
                      +.|+.|||+|.+|..+|..|...+.  ++.+++..+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4689999999999999999987764  677776543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.72  E-value=0.45  Score=37.48  Aligned_cols=34  Identities=24%  Similarity=0.178  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .++++.|||-|.+|.++|..|...|.+|..+.+.
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            4789999999999999999999999999888654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.69  E-value=0.17  Score=43.26  Aligned_cols=37  Identities=8%  Similarity=0.115  Sum_probs=27.7

Q ss_pred             CccCCceEEEECCCc--EEEeCCC---e---EEecCeEEEccCCC
Q 018652            1 MIYQDPVTSIDIEKQ--TLITNSG---K---LLKYGSLIVATGCT   37 (352)
Q Consensus         1 ~~~~~~V~~id~~~~--~V~~~~g---~---~~~yd~lViAtG~~   37 (352)
                      ++++++|++|+.++.  .|++.++   +   ...||+||+|||..
T Consensus       130 I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         130 IKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY  174 (335)
T ss_dssp             EECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             ccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEccccc
Confidence            468899999997765  4665432   1   45799999999976

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.68  E-value=0.28  Score=38.40  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=27.7

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCCc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH  105 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  105 (352)
                      +|.|||.|++|+-+|..++ .|.+|+.++.++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            6899999999999998886 5999999986653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.52  E-value=0.41  Score=36.15  Aligned_cols=38  Identities=16%  Similarity=0.126  Sum_probs=32.4

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           67 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        67 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ...++++|+|.|+|.+|+-++..+...|.+|.++.+++
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            35688999999999999999999999999988876543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=85.43  E-value=0.46  Score=40.55  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=31.3

Q ss_pred             hcCCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecC
Q 018652           68 LEKAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        68 ~~~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      +..+++|+|.| +|++|..++..|.+.|.+|....|+
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            45689999998 7999999999999999999876664

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.39  E-value=0.99  Score=36.88  Aligned_cols=53  Identities=13%  Similarity=0.228  Sum_probs=39.8

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  131 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~  131 (352)
                      ++|.++|.| ++-+|.++|..|++.|.+|.+..|++.         -.+.+.+.+++.+.+++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~---------~l~~~~~~~~~~~~~~~   58 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK---------ELDECLEIWREKGLNVE   58 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH---------HHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH---------HHHHHHHHHHhcCCCce
Confidence            688899998 556999999999999999999887542         22334556677766543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=85.36  E-value=0.44  Score=35.32  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=27.0

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCC-cEEEEecCC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~  104 (352)
                      ++|.|||+|.+|..+|..|...+. ++.+++..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            689999999999999999887764 677776544

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.33  E-value=0.1  Score=38.15  Aligned_cols=51  Identities=6%  Similarity=-0.025  Sum_probs=35.0

Q ss_pred             EEEEEEE--CCEEEEEEeecC-CHHHhhHH-HHHHhCCCCCChh-hh--cCCCchHHH
Q 018652          288 IATFWID--SGKLKGVLVESG-SPEEFQLL-PTLARSQPFVDKA-KL--QQASSVEEA  338 (352)
Q Consensus       288 ~~~~~~~--~~~v~g~~~~~~-~~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~~~e~  338 (352)
                      +.++.++  +++|+|+++++. .+.++... ..+|+.+.++++. .+  .-+|+++|+
T Consensus        53 ~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~~ai~~~~t~~dL~~~~~~yhPt~se~  110 (126)
T d1nhpa3          53 WFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKP  110 (126)
T ss_dssp             EEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCS
T ss_pred             eEEEEEECCCCCEEEEEEEechhHHHHHHHHHHHHHcCCCHHHHhcCcccCCCCCchh
Confidence            4455543  489999998764 47776544 4567999999884 32  346888885

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.32  E-value=0.58  Score=33.74  Aligned_cols=47  Identities=17%  Similarity=0.311  Sum_probs=34.4

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG  133 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~  133 (352)
                      |+++|+|.|..|.+++..|.  +.+|.+++..+..             .+.+.+.|+.++.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~-------------~~~~~~~~~~~i~G   47 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENV-------------RKKVLRSGANFVHG   47 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTH-------------HHHHHHTTCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHH-------------HHHHHhcCcccccc
Confidence            57999999999999999995  5578887655421             12345678888765

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=85.07  E-value=0.49  Score=37.25  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|||.|.+|.++|..|...|.+|..+.+..
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCcc
Confidence            46899999999999999999999999999987653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.97  E-value=0.44  Score=35.56  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=28.6

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ||.|||.|..|.-+|..|++.|.+|++..+.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            68999999999999999999999998876544

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.90  E-value=0.53  Score=35.67  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=26.2

Q ss_pred             CeEEEECCChHHHHHHHHHHhCCCc--EEEEecC
Q 018652           72 KKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFPE  103 (352)
Q Consensus        72 ~~vvVvGgG~~g~e~A~~l~~~g~~--Vtvv~~~  103 (352)
                      +++.|||.|.+|.-+|..|.+.|..  |+.++++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            4799999999999999999999864  4545443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.72  E-value=0.68  Score=35.68  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.0

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCc
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH  105 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~  105 (352)
                      .+++++|+|+|-+|--++..|.+.|. +++++.|.+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            56899999999999999999999886 6888887653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.48  E-value=1  Score=36.61  Aligned_cols=50  Identities=26%  Similarity=0.197  Sum_probs=34.9

Q ss_pred             CeEEEE-CC-ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEE
Q 018652           72 KKVVVV-GG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  130 (352)
Q Consensus        72 ~~vvVv-Gg-G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~  130 (352)
                      |||++| |+ +-+|.++|..|++.|.+|.+..|++         +-.+.+.+.+++.|.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~---------~~l~~~~~~i~~~g~~~   52 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND---------ATAKAVASEINQAGGHA   52 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCcE
Confidence            566544 64 4699999999999999999987653         22334555567766543

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.48  E-value=1.8  Score=31.70  Aligned_cols=42  Identities=19%  Similarity=0.200  Sum_probs=35.3

Q ss_pred             HHHHHhhcCCCeEEEECCC----hHHHHHHHHHHhCCCcEEEEecC
Q 018652           62 DALISSLEKAKKVVVVGGG----YIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        62 ~~~~~~~~~~~~vvVvGgG----~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      +++++.+...++++|||++    -.|..++..|.+.|.+|..|.+.
T Consensus        10 ~~i~~~L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~   55 (139)
T d2d59a1          10 EDIREILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK   55 (139)
T ss_dssp             HHHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHHHHHhcCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCc
Confidence            3455667789999999965    47999999999999999999876

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.42  E-value=0.87  Score=35.55  Aligned_cols=84  Identities=17%  Similarity=0.126  Sum_probs=50.2

Q ss_pred             hhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEEcCCeEEEEEecCCC
Q 018652           67 SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG  145 (352)
Q Consensus        67 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~~~~~v~~i~~~~~~  145 (352)
                      .++++++|+|+|+|.+|+-.+..+...|. +|.++.+++.             -.+..++.|.....+..-..+..    
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~-------------rl~~a~~~Ga~~~~~~~~~~~~~----   84 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA-------------RLAHAKAQGFEIADLSLDTPLHE----   84 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH-------------HHHHHHHTTCEEEETTSSSCHHH----
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch-------------hhHhhhhccccEEEeCCCcCHHH----
Confidence            46788999999999999888888877776 4555554431             11345667776654432111100    


Q ss_pred             cEEEEEcCCCCEEEcCEEEEccCCCC
Q 018652          146 RVAAVKLEDGSTIDADTIVIGIGAKP  171 (352)
Q Consensus       146 ~~~~v~~~~g~~i~~D~vi~a~G~~p  171 (352)
                      .+  ..+.+|  .-+|.++-++|...
T Consensus        85 ~i--~~~t~g--~g~D~vid~vG~~~  106 (195)
T d1kola2          85 QI--AALLGE--PEVDCAVDAVGFEA  106 (195)
T ss_dssp             HH--HHHHSS--SCEEEEEECCCTTC
T ss_pred             HH--HHHhCC--CCcEEEEECccccc
Confidence            00  011222  23678888888654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.30  E-value=0.42  Score=39.14  Aligned_cols=32  Identities=19%  Similarity=0.377  Sum_probs=28.7

Q ss_pred             eEEEECC-ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ||+|.|| |++|-.++..|.+.|.+|..+.+..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            5899996 9999999999999999998887764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.15  E-value=1.2  Score=36.43  Aligned_cols=52  Identities=19%  Similarity=0.248  Sum_probs=38.7

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEE
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  130 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~  130 (352)
                      ++|.++|-|+ +-+|.++|..|++.|.+|.+..++.         +-.+.+.+.+++.|.++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~---------~~l~~~~~~~~~~g~~~   56 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR---------EALEKAEASVREKGVEA   56 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHTTTSCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCcE
Confidence            5788888885 4699999999999999999987653         22344556667776543

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=84.04  E-value=0.35  Score=39.08  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=28.3

Q ss_pred             cCCceEEEECCCc---EEEeCCCeEEecCeEEEccCCC
Q 018652            3 YQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT   37 (352)
Q Consensus         3 ~~~~V~~id~~~~---~V~~~~g~~~~yd~lViAtG~~   37 (352)
                      ++.+|+++..++.   .|.+++|.++.++.||||||+.
T Consensus        86 ~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          86 FQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             EECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             HhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            4677888766554   4678899999999999999986

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=84.00  E-value=0.72  Score=36.05  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .++++.|||-|.+|-++|..+...|.+|..+.+..
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            57899999999999999999999999999887643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=83.99  E-value=0.59  Score=35.77  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      +|-|||-|..|..+|..|.+.|.+|+++.|.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58899999999999999999999999987653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=83.60  E-value=0.72  Score=36.33  Aligned_cols=33  Identities=21%  Similarity=0.156  Sum_probs=30.2

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCCcEEEEec
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP  102 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~  102 (352)
                      .+++|+|-|-|.+|..+|..|.+.|.+|++.+.
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            678999999999999999999999999987654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=83.47  E-value=0.77  Score=34.72  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=29.1

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC--cEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~  103 (352)
                      +.++|.|||.|.+|..+|..|...+.  ++.+++..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            45799999999999999999998875  68887654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=83.30  E-value=0.48  Score=38.51  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=29.9

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~  103 (352)
                      ..++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            46799999999999999999999996 68888754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.17  E-value=1.4  Score=35.63  Aligned_cols=52  Identities=19%  Similarity=0.138  Sum_probs=36.9

Q ss_pred             CCCeEEEECCC-hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEE
Q 018652           70 KAKKVVVVGGG-YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  130 (352)
Q Consensus        70 ~~~~vvVvGgG-~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~  130 (352)
                      .||.++|-|++ -+|.++|..|++.|.+|.+..++..         -.+.+.+.+++.|-++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~---------~l~~~~~~~~~~~~~~   58 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH---------GLEETAAKCKGLGAKV   58 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH---------HHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH---------HHHHHHHHHHhcCCcE
Confidence            46777777855 5999999999999999999877542         2233445556665443

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=83.15  E-value=1.8  Score=32.00  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=27.0

Q ss_pred             eEEEECCChHHHHHHHHHHhCC-CcEEEEecCC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPEN  104 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~  104 (352)
                      ++.+||.|..|--++..|.+.| .+|.+..|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            6889999999999999888776 7888876653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.96  E-value=1.7  Score=35.49  Aligned_cols=54  Identities=17%  Similarity=0.172  Sum_probs=39.9

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  131 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~  131 (352)
                      ++|.++|-| ++-+|.++|..|++.|.+|.+..+...        +..+.+.+.+++.|.+++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~--------~~~~~~~~~~~~~g~~~~   60 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE--------DEANSVLEEIKKVGGEAI   60 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH--------HHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH--------HHHHHHHHHHHhcCCcEE
Confidence            567777777 456999999999999999999877542        334456666777776654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=82.74  E-value=0.8  Score=33.74  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=28.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCC--CcEEEEecCCc
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENH  105 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~  105 (352)
                      ||.|||+|.+|..+|..|...+  .++.+++..+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            6899999999999999998876  57888886653

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.70  E-value=1.5  Score=36.72  Aligned_cols=62  Identities=19%  Similarity=0.081  Sum_probs=43.1

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  131 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~  131 (352)
                      ++|.++|-|+ +-+|.++|..|++.|.+|.+..++.......-.....+.+.+.+...+....
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAV   68 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccc
Confidence            4666767674 4589999999999999999988765443322334555566666677766554

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.52  E-value=1.9  Score=37.11  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=27.9

Q ss_pred             CCeEEEEC-CChHHHHHHHHHHhCCCcEEEEe
Q 018652           71 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIF  101 (352)
Q Consensus        71 ~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~  101 (352)
                      |+||+|.| +|++|..++..|.+.|.+|+.++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            57899998 79999999999999999999885

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.41  E-value=0.86  Score=36.62  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=30.2

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++|+++|.|+ +-+|.++|..|++.|.+|.++.+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4789999985 6699999999999999999887653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.34  E-value=0.57  Score=41.59  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=30.3

Q ss_pred             CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEecC
Q 018652           70 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtvv~~~  103 (352)
                      ...+|+|||.|-+|+|+|..|+..|. ++++++..
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            35789999999999999999999996 78998765

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.27  E-value=0.58  Score=39.34  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=31.1

Q ss_pred             CccCCceEEEECCCc--EEEeCCCeEEecCeEEEccCCC
Q 018652            1 MIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT   37 (352)
Q Consensus         1 ~~~~~~V~~id~~~~--~V~~~~g~~~~yd~lViAtG~~   37 (352)
                      ++++++|++|+.++.  .|++.||+++.+|++|+|+...
T Consensus       224 i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~  262 (383)
T d2v5za1         224 VKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPT  262 (383)
T ss_dssp             EEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGG
T ss_pred             EEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHH
Confidence            467899999998665  6778899999999999998753

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.90  E-value=0.91  Score=34.72  Aligned_cols=37  Identities=19%  Similarity=0.139  Sum_probs=32.3

Q ss_pred             hcCCCeEEEECCChHHHHHHHHHHhCC-CcEEEEecCC
Q 018652           68 LEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPEN  104 (352)
Q Consensus        68 ~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtvv~~~~  104 (352)
                      ++++..|+|+|.|.+|+-.+..++..| .+|..+++++
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            567889999999999999999999999 4688887765

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.77  E-value=1.6  Score=35.44  Aligned_cols=53  Identities=13%  Similarity=0.098  Sum_probs=38.2

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEE
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF  130 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~  130 (352)
                      .+|.++|-|| +-+|.++|..|++.|.+|.+..+++        .+..+.+.+.+++.|.++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~--------~~~~~~~~~~~~~~g~~~   58 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS--------SKAAEEVVAELKKLGAQG   58 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC--------hHHHHHHHHHHHHcCCCc
Confidence            4677777774 5699999999999999998865543        233455666677776543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=81.74  E-value=0.95  Score=34.35  Aligned_cols=36  Identities=17%  Similarity=0.143  Sum_probs=30.7

Q ss_pred             cCCCeEEEECCC-hHHHHHHHHHHhCCCcEEEEecCC
Q 018652           69 EKAKKVVVVGGG-YIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        69 ~~~~~vvVvGgG-~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      -.+|+++|||.+ ..|..+|..|.+.|..|++.+...
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            368999999955 589999999999999999986543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.72  E-value=1.3  Score=33.69  Aligned_cols=34  Identities=18%  Similarity=0.124  Sum_probs=29.8

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecC
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      .+|+++||| +...|.-+|..|.++|..|++.+..
T Consensus        28 ~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          28 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            689999999 5567999999999999999988754

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.63  E-value=0.95  Score=34.54  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             CCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      .+++++|||- ...|.-+|..|.+.|..|++++...
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             ccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            7899999995 5689999999999999999987654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.54  E-value=1.6  Score=35.67  Aligned_cols=54  Identities=20%  Similarity=0.239  Sum_probs=39.6

Q ss_pred             CCCeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 018652           70 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  131 (352)
Q Consensus        70 ~~~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~  131 (352)
                      ++|.++|-| ++-+|..+|..|++.|.+|.+..++.        ++..+.+.+.+++.|.+++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~--------~~~~~~~~~~~~~~g~~~~   71 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS--------TESAEEVVAAIKKNGSDAA   71 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC--------HHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc--------hHHHHHHHHHHHhhCCcee
Confidence            578788887 56789999999999999999877653        2334455566777775543

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=81.41  E-value=1.1  Score=36.38  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=39.0

Q ss_pred             hcCCCeEEEEC-CChHHHHHHHHHHhCCCc-EEEEecCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 018652           68 LEKAKKVVVVG-GGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  131 (352)
Q Consensus        68 ~~~~~~vvVvG-gG~~g~e~A~~l~~~g~~-Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~  131 (352)
                      +++++.++|.| +|-+|.++|..|++.|.+ |.++.|+..-.      +..+.+.+.+++.|.++.
T Consensus         6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~------~~~~~~~~~l~~~g~~v~   65 (259)
T d2fr1a1           6 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDA------DGAGELVAELEALGARTT   65 (259)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGS------TTHHHHHHHHHHTTCEEE
T ss_pred             cCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCH------HHHHHHHHHHHhcccccc
Confidence            45667888888 577999999999999985 66666653211      122344455677776654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.14  E-value=0.8  Score=34.13  Aligned_cols=31  Identities=13%  Similarity=0.104  Sum_probs=28.1

Q ss_pred             eEEEECCChHHHHHHHHHHhCCCcEEEEecC
Q 018652           73 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        73 ~vvVvGgG~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ++.+||.|..|.-++..|.+.+.++++..|.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            5889999999999999999999999987765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.63  E-value=0.88  Score=34.74  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=29.5

Q ss_pred             hcCCCeEEEECC-ChHHHHHHHHHHhCCCcEEEEecC
Q 018652           68 LEKAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPE  103 (352)
Q Consensus        68 ~~~~~~vvVvGg-G~~g~e~A~~l~~~g~~Vtvv~~~  103 (352)
                      ++++++|+|.|+ |.+|.-++..+...|.++..+.++
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~   59 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS   59 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeecc
Confidence            456788999886 999999999888899988876543

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.46  E-value=1.2  Score=33.61  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=27.8

Q ss_pred             CCeEEEECCChHHHHHHHHHHhCCC--cEEEEecC
Q 018652           71 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPE  103 (352)
Q Consensus        71 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtvv~~~  103 (352)
                      ..+|.|||+|.+|..+|..|...+.  ++.+++..
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3579999999999999999998864  68887654

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.45  E-value=0.92  Score=37.87  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=29.6

Q ss_pred             CeEEEEC-CChHHHHHHHHHHhCCCcEEEEecCC
Q 018652           72 KKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        72 ~~vvVvG-gG~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      |+|+|.| +|++|-.++..|.++|.+|+.+.+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6889998 69999999999999999999988764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=80.44  E-value=2.5  Score=34.27  Aligned_cols=53  Identities=13%  Similarity=0.154  Sum_probs=37.9

Q ss_pred             CCCeEEEECCC-hHHHHHHHHHHhCCCcEEEEecCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 018652           70 KAKKVVVVGGG-YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV  131 (352)
Q Consensus        70 ~~~~vvVvGgG-~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~gV~~~  131 (352)
                      ++|.++|-|++ -+|..+|..|++.|.+|.+..++.         +-.+.+.+.+++.|.+..
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~---------~~l~~~~~~~~~~g~~~~   60 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ---------KELNDCLTQWRSKGFKVE   60 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---------HHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---------HHHHHHHHHHHhcCCCce
Confidence            57888888854 699999999999999999987653         222334455666665543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=80.24  E-value=0.55  Score=38.35  Aligned_cols=27  Identities=30%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             EEEeCCCeEEecCeEEEccCCCCCCCCCC
Q 018652           16 TLITNSGKLLKYGSLIVATGCTASRFPEK   44 (352)
Q Consensus        16 ~V~~~~g~~~~yd~lViAtG~~~~~~~~~   44 (352)
                      +|.. +|+++++|++++|||++|+. +.+
T Consensus       164 ~v~~-~g~~i~ad~viiAtG~~P~~-~~i  190 (261)
T d1mo9a1         164 TVEA-AGKVFKAKNLILAVGAGPGT-LDV  190 (261)
T ss_dssp             EEEE-TTEEEEBSCEEECCCEECCC-CCS
T ss_pred             cccc-ccceEeeeeeeeccCCCCCc-Ccc
Confidence            4444 67889999999999999864 443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=80.09  E-value=1.1  Score=36.66  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             CCCeEEEECC-C--hHHHHHHHHHHhCCCcEEEEecCC
Q 018652           70 KAKKVVVVGG-G--YIGMEVAAAAVGWKLDTTIIFPEN  104 (352)
Q Consensus        70 ~~~~vvVvGg-G--~~g~e~A~~l~~~g~~Vtvv~~~~  104 (352)
                      ++|+++|.|+ |  -+|..+|..|++.|.+|.+..+++
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5899999995 3  499999999999999999998764