Citrus Sinensis ID: 018654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHHHcccccccccccccccEEcccccccccccccHHccccccEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccEEEEEEEEEEEccccccccccccEEHccccccccccccccEEEEccccccccHHHHEEccccccEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
MEEVEEANKAAVESCHRVLSllsqpqdqvQYKNLMVETGEAVFRFKKVVSLLNNGSGHARVRKlrklpnpvnqsiflenphhkteipsknlqflqssfhdnpvqemgslakssltlgnpslelisngkqhlqlgqqtpstsahYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFrksnsgvslnfdsssctptmssnrSFISSLsmdgsvanldgsafhligaprssdqssqqhkrkcsgrgedgsvkcgsngrchcskkrkHRVKKSIkvpaisnkladippddyswrkygqkpikgsphprgyykcssmrgcparkhvercleepTMLIVTyegehnhprlpsqsatt
Flexible Loop (DISEMBL)
MEEVEEANKAAVESCHRVLSllsqpqdqvQYKNLMVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGaprssdqssqqhKRKCsgrgedgsvkcgsngrchcskkrkhrvkksikvpaisnkladippddySWRKYgqkpikgsphprgyykCSSMRGCPARKHVERCLEEPTMLIVTyegehnhprlpsqsatt
Low Complexity Region (SEG)
MeeveeankaaveSCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAhyhflqqqqlqqrllhqqqqqqqhhmklqAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRchcskkrkhrvkksikvPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT
Disordered region (IsUnstruct)
**************CHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHARVRK********************************************************************************************************************************************************************************************************************************YSWRKY************GYYKCSSMRGCPARKHVERCLEEPTMLIVTY****************
Disordered Region (DISOPRED)
*EEVEEANKAAVESCHRVL*******************GEAVFRFKK*****************************************************************************************************************************************************************************************************************************************ADIPPDDYSWRKYGQ******PHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHN***********
Disordered Region (DISEMBL)
**************CHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQ*******************LQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGA********************************************SIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH**********
Disordered Region (DISPRO)
*************SCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNG*GH**V**********************************************************************************YHFLQQQQLQQRLLHQQQQQQQHHMK***********************************************************************************************HRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGE*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
O04336	380	Probable WRKY transcripti	yes	no	0.985	0.913	0.576	1e-104
Q9SR07	330	Probable WRKY transcripti	no	no	0.886	0.945	0.521	5e-84
Q93WU6	330	Probable WRKY transcripti	no	no	0.917	0.978	0.518	3e-83
Q32SG4	397	Protein WRKY1 OS=Zea mays	N/A	no	0.965	0.856	0.454	1e-72
Q9SV15	325	Probable WRKY transcripti	no	no	0.781	0.846	0.376	7e-47
Q9SJA8	321	Probable WRKY transcripti	no	no	0.386	0.423	0.557	1e-43
O22176	317	Probable WRKY transcripti	no	no	0.312	0.347	0.669	4e-42
Q9STX0	353	Probable WRKY transcripti	no	no	0.417	0.416	0.542	4e-42
O64747	427	Probable WRKY transcripti	no	no	0.281	0.231	0.504	2e-23
Q9LP56	259	Probable WRKY transcripti	no	no	0.190	0.258	0.661	3e-23

>sp|O04336|WRK21_ARATH Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/385 (57%), Positives = 271/385 (70%), Gaps = 38/385 (9%)

Query: 1   MEEVEEANKAAVESCHRVLSLL--SQPQDQVQY-KNLMVETGEAVFRFKKVVSLLNNGSG 57
           MEE+E  N+AAVESCHRVL+LL  SQ QD V + KNL+ ET EAV RFK+V SLL++  G
Sbjct: 1   MEEIEGTNRAAVESCHRVLNLLHRSQQQDHVGFEKNLVSETREAVIRFKRVGSLLSSSVG 60

Query: 58  HARVRKLRKLPNPVNQSIFLENPHHKT-EIPSKNLQ---FLQSSFHDNPVQEMGSLAKSS 113
           HAR R+ +KL + V+QS+ L+    +T E+PS + Q    L+S F +  +++       S
Sbjct: 61  HARFRRAKKLQSHVSQSLLLDPCQQRTTEVPSSSSQKTPVLRSGFQELSLRQ----PSDS 116

Query: 114 LTLGNPSLELISNGKQHL-QLGQQTPSTSAHYHFL-----------------------QQ 149
           LTLG  S  L SN K  L QL QQT   S +                           QQ
Sbjct: 117 LTLGTRSFSLNSNAKAPLLQLNQQTMPPSNYPTLFPVQQQQQQQQQQQQQEQQQQQQQQQ 176

Query: 150 QQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMD 209
           QQ  +RL      QQQ   K QAE M RK N G+SL+FD+SSCTPTMSS RSF+SSLS+D
Sbjct: 177 QQFHERLQAHHLHQQQQLQKHQAELMLRKCNGGISLSFDNSSCTPTMSSTRSFVSSLSID 236

Query: 210 GSVANLDG-SAFHLIGAPRSSDQSSQQHKRKCSGRGED-GSVKCGSNGRCHCSKKRKHRV 267
           GSVAN++G ++FH  G P S+DQ+S   KRKC  +G++ GS+KCGS+ RCHC+KKRKHRV
Sbjct: 237 GSVANIEGKNSFHF-GVPSSTDQNSLHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRKHRV 295

Query: 268 KKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLE 327
           ++SI+VPAISNK+ADIPPDDYSWRKYGQKPIKGSP+PRGYYKCSSMRGCPARKHVERCLE
Sbjct: 296 RRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLE 355

Query: 328 EPTMLIVTYEGEHNHPRLPSQSATT 352
           +P MLIVTYE EHNHP+LPSQ+ TT
Sbjct: 356 DPAMLIVTYEAEHNHPKLPSQAITT 380

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR07|WRK39_ARATH Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=2 SV=1

 Score =  311 bits (797), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 193/370 (52%), Positives = 236/370 (63%), Gaps = 58/370 (15%)

Query: 1   MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHAR 60
           MEEVE AN++A+ESCH VL+LLSQ       K+L VETGE V +FK+V SLL  G GH +
Sbjct: 1   MEEVEAANRSAIESCHGVLNLLSQRTSDP--KSLTVETGEVVSKFKRVASLLTRGLGHGK 58

Query: 61  VRKLRKLPNPVNQSIFLENP---------HHKTEIPSKNLQFLQSSFHDNPVQEMGSLAK 111
            R   K  +   Q IFLE+P          +   +  + LQ + +S   N ++    L  
Sbjct: 59  FRSTNKFRSSFPQHIFLESPICCGNDLSGDYTQVLAPEPLQMVPASAVYNEMEPKHQL-- 116

Query: 112 SSLTLGNPSLEL---ISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHM 168
                G+PSL L   +   K  L+L  + P   A Y          +L+H  QQ      
Sbjct: 117 -----GHPSLMLSHKMCVDKSFLEL--KPPPFRAPY----------QLIHNHQQIA---- 155

Query: 169 KLQAEKMFRKSNSGVSLNFDSS--SC-TPTMSS-NRSFISSLSMDGSVANLDGSAFHLIG 224
                  + +SNSGV+L FD S  SC TP++S+ +RSF+SSLSMD SV + D ++FHL G
Sbjct: 156 -------YSRSNSGVNLKFDGSGSSCYTPSVSNGSRSFVSSLSMDASVTDYDRNSFHLTG 208

Query: 225 APRSSDQSSQQHKRK-CSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADI 283
             R SDQ   QH RK CSG     S+KCGS  +CHCSKKRK RVK+SIKVPAISNK+ADI
Sbjct: 209 LSRGSDQ---QHTRKMCSG-----SLKCGSRSKCHCSKKRKLRVKRSIKVPAISNKIADI 260

Query: 284 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHP 343
           PPD+YSWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC++E +MLIVTYEGEHNH 
Sbjct: 261 PPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNHS 320

Query: 344 R-LPSQSATT 352
           R L SQSA T
Sbjct: 321 RILSSQSAHT 330

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU6|WRK74_ARATH Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=2 SV=2

 Score =  308 bits (790), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 186/359 (51%), Positives = 235/359 (65%), Gaps = 36/359 (10%)

Query: 1   MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHAR 60
           MEEVE ANKAAVESCH VL+LLSQ  +    K++MVET EAV +FK+V SLL+ G G  +
Sbjct: 1   MEEVEAANKAAVESCHGVLNLLSQQTNDS--KSIMVETREAVCKFKRVSSLLSRGLGQRK 58

Query: 61  VRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPS 120
           ++KL       + S+    P H          FL+S     PV    +++     L    
Sbjct: 59  IKKLNNNNYKFSSSLL---PQH---------MFLES-----PVCSNNAISGCIPILAPKP 101

Query: 121 LELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSN 180
           L+++  G   L L  Q  +      FL+ +    R +  +  Q  H      + ++ +S 
Sbjct: 102 LQIVPAGPPPLMLFNQ--NMCLDKSFLELKPPSSRAVDPKPYQFIH---THQQGVYSRSK 156

Query: 181 SGVSLNFDSS---SC-TPTMSS-NRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQ 235
           SG++L FD S   SC +P++S+ +RSF+SSLSMDGSV + D ++FHLIG P+ SD  SQ 
Sbjct: 157 SGLNLKFDGSIGASCYSPSISNGSRSFVSSLSMDGSVTDYDRNSFHLIGLPQGSDHISQH 216

Query: 236 HKRK-CSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYG 294
            +R  CSG     S+KCGS  +CHCSKKRK RVK+SIKVPAISNK+ADIPPD+YSWRKYG
Sbjct: 217 SRRTSCSG-----SLKCGSKSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYG 271

Query: 295 QKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPR-LPSQSATT 352
           QKPIKGSPHPRGYYKCSS+RGCPARKHVERC+EE +MLIVTYEGEHNH R L SQSA T
Sbjct: 272 QKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNHSRILSSQSAHT 330

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG4|WRKY1_MAIZE Protein WRKY1 OS=Zea mays PE=1 SV=1

 Score =  273 bits (699), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 185/407 (45%), Positives = 245/407 (60%), Gaps = 67/407 (16%)

Query: 1   MEEVEEANKAAVESCHRVLSLLSQPQDQ-VQYKNLMVETGEAVFRFKKVVSLLNNGSG-- 57
           ME +EEAN+ AVESCHRVL+LLS P  Q V  K L+  TGEAV +F  + + L+N +G  
Sbjct: 1   MEGMEEANRTAVESCHRVLALLSNPHGQLVPSKELVAATGEAVAKFGSLTAKLSNSNGDG 60

Query: 58  ----HARVRKLRKLPNPVNQSIFLE----------------NPHHKTEIPSKNLQFLQSS 97
               HARVRK++K  +  + ++FLE                +P    ++  +  QF  SS
Sbjct: 61  LLQGHARVRKVKKPLHIFDSNLFLESSAVAAAAAPAKTPSPSPILGLQLFPRYHQFEGSS 120

Query: 98  FHDN---PVQEMGSLAKSSLTLGN--------PSLELISNGKQHLQLGQQTPSTS-AHYH 145
             D    P Q    L     T G         P ++++         G  TP+   AH H
Sbjct: 121 SKDPVRIPTQFPKRLLLEKPTAGMEGSTSQSPPIVQMVQPVSVAPPAGTPTPALPPAHLH 180

Query: 146 FLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSN----------------SGVSLNFDS 189
           F+QQQQ  QR    QQ      MK+Q+E M ++SN                 GV+L FDS
Sbjct: 181 FIQQQQSYQRFQLMQQ------MKIQSE-MMKRSNLGDQGGSLSGGGGGGRKGVNLKFDS 233

Query: 190 SSCTPTMSSNRSFISSLSMDGSVANLDGS----AFHLIGAPR--SSDQSSQQHKRKCSGR 243
           S+CT + S +    SSLSM+GS+A+LDGS     F L+   +  S+ +     +R+C+GR
Sbjct: 234 SNCTASSSRSFL--SSLSMEGSLASLDGSRTSRPFQLLSGSQTASTPELGLVQRRRCAGR 291

Query: 244 GEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPH 303
            EDG+ +C +  RCHCSKKRK R+++SIKVPAISNK+ADIP D++SWRKYGQKPIKGSPH
Sbjct: 292 -EDGTGRCATGSRCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQKPIKGSPH 350

Query: 304 PRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSA 350
           PRGYYKCSS+RGCPARKHVERC+++P+MLIVTYEG+HNH R+ +Q A
Sbjct: 351 PRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVLAQPA 397

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Zea mays (taxid: 4577)

>sp|Q9SV15|WRK11_ARATH Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=2 SV=2

 Score =  188 bits (477), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/351 (37%), Positives = 173/351 (49%), Gaps = 76/351 (21%)

Query: 4   VEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHARVRK 63
           ++EA    ++S   ++ +LS   +Q    +    T   V +FK V+SLLN  +GHAR R+
Sbjct: 17  IQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKFKTVISLLNR-TGHARFRR 75

Query: 64  LRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLEL 123
                           P H T   S   Q LQS    N                 P   +
Sbjct: 76  ---------------GPVHSTS--SAASQKLQSQIVKN---------------TQPEAPI 103

Query: 124 ISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGV 183
           +     H Q+    P +S    F +      +                AE  F K N  V
Sbjct: 104 VRTTTNHPQI--VPPPSSVTLDFSKPSIFGTK-------------AKSAELEFSKENFSV 148

Query: 184 SLNFDSSSCTPTMSSNRSFISS-LSMDGSVANLDGSAFHLIGAPRSSDQSSQQ------- 235
           SLN              SF+SS ++ DGSV+N  G  F L  AP     SS +       
Sbjct: 149 SLN-------------SSFMSSAITGDGSVSN--GKIF-LASAPLQPVNSSGKPPLAGHP 192

Query: 236 HKRKC----SGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWR 291
           ++++C          G V   + G+CHC K RK+R+K++++VPAIS K+ADIPPD+YSWR
Sbjct: 193 YRKRCLEHEHSESFSGKVSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDEYSWR 252

Query: 292 KYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 342
           KYGQKPIKGSPHPRGYYKCS+ RGCPARKHVER L++P MLIVTYEGEH H
Sbjct: 253 KYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRH 303

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJA8|WRK17_ARATH Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=2 SV=2

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 107/149 (71%), Gaps = 13/149 (8%)

Query: 205 SLSMDGSVANLDGSAFHLIGAPRSSDQSSQQ-------HKRKCS----GRGEDGSVKCGS 253
           +++ DGSV+   GS+  L  AP     SS +       ++++C       G  G +    
Sbjct: 154 AITGDGSVSK--GSSIFLAPAPAVPVTSSGKPPLSGLPYRKRCFEHDHSEGFSGKISGSG 211

Query: 254 NGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSM 313
           NG+CHC K RK+R+K++++VPA+S K+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCS+ 
Sbjct: 212 NGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTF 271

Query: 314 RGCPARKHVERCLEEPTMLIVTYEGEHNH 342
           RGCPARKHVER L++ TMLIVTYEGEH H
Sbjct: 272 RGCPARKHVERALDDSTMLIVTYEGEHRH 300

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22176|WRK15_ARATH Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=2 SV=1

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 90/112 (80%), Gaps = 2/112 (1%)

Query: 233 SQQHKRKCSGRG--EDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSW 290
           S+  KRKC+             S+GRCHCSKKRK + ++ I+VPAIS K++D+PPDDYSW
Sbjct: 186 SKSTKRKCNSENLLTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDYSW 245

Query: 291 RKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 342
           RKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVER  ++ +MLIVTYEG+HNH
Sbjct: 246 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNH 297

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STX0|WRKY7_ARATH Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 111/164 (67%), Gaps = 17/164 (10%)

Query: 184 SLNFDSSSCTPTMSSNRSFISSLSMDGSVANLD-GSAF----HLIGAPRSSDQSSQQHKR 238
           ++NF  S   P +S+  SF+SS   D    ++  G  F     L G+      SS   KR
Sbjct: 187 TINFAPS---PPVSATNSFMSSHRCDTDSTHMSSGFEFTNPSQLSGSRGKPPLSSASLKR 243

Query: 239 KCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPI 298
           +C+            + RCHCSKKRK RVK+ I+VPA+S+K+ADIP D++SWRKYGQKPI
Sbjct: 244 RCNS---------SPSSRCHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPI 294

Query: 299 KGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 342
           KGSPHPRGYYKCSS+RGCPARKHVER L++  MLIVTYEG+HNH
Sbjct: 295 KGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNH 338

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O64747|WRK35_ARATH Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 6/105 (5%)

Query: 249 VKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLAD-----IPPDDYSWRKYGQKPIKGSPH 303
           V+  S+ R    K+RK + KK + +PA +   +      +P D ++WRKYGQKPIKGSP+
Sbjct: 174 VQISSSPRNLGIKRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPY 233

Query: 304 PRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQ 348
           PRGYY+CSS +GC ARK VER   +P ML++TY  EHNHP  P+Q
Sbjct: 234 PRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHP-WPTQ 277

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP56|WRK65_ARATH Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 284 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHP 343
           P D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER  ++PTM+++TY  EHNHP
Sbjct: 73  PSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHP 132

Query: 344 RLPSQSAT 351
             P  S+T
Sbjct: 133 -WPLTSST 139

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
255559953	353	WRKY transcription factor, putative [Ric	0.994	0.991	0.794	1e-157
224082746	347	predicted protein [Populus trichocarpa]	0.980	0.994	0.802	1e-153
224066297	351	predicted protein [Populus trichocarpa]	0.991	0.994	0.793	1e-151
302399135	355	WRKY domain class transcription factor [	0.991	0.983	0.743	1e-141
356536719	392	PREDICTED: probable WRKY transcription f	0.980	0.880	0.749	1e-140
225437249	340	PREDICTED: probable WRKY transcription f	0.960	0.994	0.737	1e-139
350540816	342	WRKY8, partial [Panax quinquefolius]	0.951	0.979	0.711	1e-138
350540824	339	WRKY35 [Panax quinquefolius]	0.960	0.997	0.708	1e-133
225463956	362	PREDICTED: probable WRKY transcription f	0.997	0.969	0.663	1e-128
351725433	321	transcription factor [Glycine max] gi|16	0.892	0.978	0.760	1e-126

>gi|255559953|ref|XP_002520995.1| WRKY transcription factor, putative [Ricinus communis] gi|223539832|gb|EEF41412.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 282/355 (79%), Positives = 315/355 (88%), Gaps = 5/355 (1%)

Query: 1   MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHAR 60
           MEEVEEAN+ AVESCHRVLSLLS+PQDQVQY+NLM ETGEAVF+FK+V+SLLN+G GHAR
Sbjct: 1   MEEVEEANRTAVESCHRVLSLLSKPQDQVQYRNLMAETGEAVFKFKRVISLLNSGLGHAR 60

Query: 61  VRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSS-FHDN-PVQEMGSLAKSSLTLGN 118
           VRKL+KLP P++Q+I L+NPHH+T+ PSKN QFLQSS + DN P+QE+GS +KSSL LG 
Sbjct: 61  VRKLKKLPTPISQNILLDNPHHRTDHPSKNYQFLQSSSYLDNQPIQELGSNSKSSLCLGT 120

Query: 119 PSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQ-AEKMFR 177
           PSLEL +NGK  L + QQTPS   HYHFLQQQQ  Q     Q QQQ      Q AE MFR
Sbjct: 121 PSLELSTNGKNPLHVAQQTPS--PHYHFLQQQQQLQLQQRIQLQQQHQQQMKQQAEIMFR 178

Query: 178 KSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHK 237
           KSNSG++LNFD+SSCTPTMSSNRSFISSLS+DGSV N++GSAFHLIG PR+SDQSSQQHK
Sbjct: 179 KSNSGINLNFDNSSCTPTMSSNRSFISSLSIDGSVTNMEGSAFHLIGGPRASDQSSQQHK 238

Query: 238 RKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKP 297
           RKCSGRGEDGSVKCGS+GRCHCSKKRKHRVK+SIKVPAISNKLADIPPDDYSWRKYGQKP
Sbjct: 239 RKCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKP 298

Query: 298 IKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT 352
           IKGSPHPRGYYKCSSMRGCPARKHVERCLE+P+MLIVTYEGEHNHPR+P+QSA T
Sbjct: 299 IKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPRIPTQSANT 353

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082746|ref|XP_002306823.1| predicted protein [Populus trichocarpa] gi|222856272|gb|EEE93819.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/354 (80%), Positives = 310/354 (87%), Gaps = 9/354 (2%)

Query: 1   MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHAR 60
           ME VEEAN+AAVESCHRV+SLLSQPQDQVQY+NLMVETGEAVFRFKKVVSLLN G GHAR
Sbjct: 1   MEGVEEANRAAVESCHRVISLLSQPQDQVQYRNLMVETGEAVFRFKKVVSLLNTGLGHAR 60

Query: 61  VRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSS--FHDNPVQEMGSLAKSSLTLGN 118
           VRKL+KLP P++QSI L+NP   T+ PSK  QFLQSS      P+QE+GS+AK+ L+LG 
Sbjct: 61  VRKLKKLPTPLSQSILLDNPLSSTDHPSKTPQFLQSSSYLESQPIQELGSIAKNCLSLGT 120

Query: 119 PSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRK 178
           PSLEL SNGK  LQLGQ TP+  AHY FLQQQQL +      Q QQQ  MK QAE MFRK
Sbjct: 121 PSLELSSNGKNPLQLGQPTPA--AHYQFLQQQQLHR-----LQLQQQQQMKQQAEMMFRK 173

Query: 179 SNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKR 238
           SNSG+SLNFDSSSCTPTMSS RSFISSLS+DG+VANL+GSAFHL GA RSSDQSSQQHKR
Sbjct: 174 SNSGISLNFDSSSCTPTMSSTRSFISSLSIDGNVANLEGSAFHLTGAARSSDQSSQQHKR 233

Query: 239 KCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPI 298
           KCSGRGEDGS+KCGS+ RCHCSKKRKHRVK+SIKVPAISNKLADIPPDDYSWRKYGQKPI
Sbjct: 234 KCSGRGEDGSMKCGSSVRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPI 293

Query: 299 KGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT 352
           KGSPHPRGYYKCSSMRGCPARKHVERCLE+P+MLIVTYEGEHNHPR+P+QS  T
Sbjct: 294 KGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPRIPAQSTNT 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066297|ref|XP_002302070.1| predicted protein [Populus trichocarpa] gi|222843796|gb|EEE81343.1| predicted protein [Populus trichocarpa]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/354 (79%), Positives = 309/354 (87%), Gaps = 5/354 (1%)

Query: 1   MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHAR 60
           ME VEEAN+AAVESCHRV+SLLSQPQDQVQY+NLMVETGEAVFRFKKVVSLLN G GHAR
Sbjct: 1   MEGVEEANRAAVESCHRVISLLSQPQDQVQYRNLMVETGEAVFRFKKVVSLLNTGLGHAR 60

Query: 61  VRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSS--FHDNPVQEMGSLAKSSLTLGN 118
           VRKL+KLP P++QSI L+N  ++T   SK  QFLQSS     +P+QE+GS AK+ L+LG 
Sbjct: 61  VRKLKKLPTPLSQSILLDNSLNRTGHSSKTPQFLQSSSYLESHPIQELGSSAKNCLSLGT 120

Query: 119 PSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRK 178
           PSLEL S GK  LQLGQ  P+++A+Y    Q Q QQ    Q QQQQQ  MK QAE MFRK
Sbjct: 121 PSLELSSTGKNPLQLGQ--PTSAANYQ-FLQLQQQQLHRLQLQQQQQQQMKQQAEMMFRK 177

Query: 179 SNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKR 238
           SNSG+SLNFDSSSCTPTMSS RSFISSLS+DGSVANL+GSAFHL+G  RSSDQSSQQHKR
Sbjct: 178 SNSGISLNFDSSSCTPTMSSTRSFISSLSIDGSVANLEGSAFHLMGPARSSDQSSQQHKR 237

Query: 239 KCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPI 298
           KCSGRGEDGSVKCGS+GRCHCSKKRKHRVK+SIKVPAISNKLADIPPDDYSWRKYGQKPI
Sbjct: 238 KCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPI 297

Query: 299 KGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT 352
           KGSPHPRGYYKCSSMRGCPARKHVERCLE+P+MLIVTYEGEHNHPR+P+QSA T
Sbjct: 298 KGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPRIPAQSANT 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399135|gb|ADL36862.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/358 (74%), Positives = 297/358 (82%), Gaps = 9/358 (2%)

Query: 1   MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHAR 60
           MEEVEEANK AVESCHRVLSLLSQPQ+QVQY+NL VETG+AV RFKKVVS+LN G GHAR
Sbjct: 1   MEEVEEANKTAVESCHRVLSLLSQPQEQVQYRNLTVETGKAVSRFKKVVSILNTGLGHAR 60

Query: 61  VRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPS 120
           VRKL+KL  P  + I L+NP    + PSK   FLQSSF +NP Q++    KS+L LGNPS
Sbjct: 61  VRKLKKLQIPFPERILLDNPISIADRPSKTPHFLQSSFPENPTQDLSLDVKSALCLGNPS 120

Query: 121 LELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHH-----MKLQAEKM 175
           LEL +NGK  +   QQ P   A YH LQQQ+  Q+   QQQ QQ+       MK Q E M
Sbjct: 121 LELSTNGKTPIHPAQQVPP--AQYHLLQQQRQHQQHQQQQQLQQRMLLQQHQMKQQTEMM 178

Query: 176 FRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQ 235
           +R+SNSG++LNFDSSSCTPTMSS RSFISSLS+DGSVAN DG++FHLIGAP SSDQ+SQ 
Sbjct: 179 YRRSNSGINLNFDSSSCTPTMSSTRSFISSLSIDGSVANFDGNSFHLIGAPLSSDQNSQ- 237

Query: 236 HKRKCSGRGEDGSVKCG-SNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYG 294
           HKRKCS RG+DGSVKCG S+GRCHCSKKRKHRVK+SIKVPAISNKLADIPPDDYSWRKYG
Sbjct: 238 HKRKCSARGDDGSVKCGGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYG 297

Query: 295 QKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT 352
           QKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEP+ML+VTYEGEHNHPR+PSQS TT
Sbjct: 298 QKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLMVTYEGEHNHPRIPSQSTTT 355

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536719|ref|XP_003536883.1| PREDICTED: probable WRKY transcription factor 21-like [Glycine max]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/359 (74%), Positives = 303/359 (84%), Gaps = 14/359 (3%)

Query: 1   MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHAR 60
           MEEVE+AN+ AVESCHRVLSLLSQP+DQVQ++NLMVETGE V RFKKVVS+L+NG GHAR
Sbjct: 37  MEEVEQANRVAVESCHRVLSLLSQPRDQVQHRNLMVETGETVVRFKKVVSMLHNGLGHAR 96

Query: 61  VRKLRKLPNPVN-QSIFLENPHHKT--------EIPSKNLQFLQSSFHDNPVQEMGSLAK 111
           VRKL+    P + QSIFL+NP+ KT            KNL F Q+S+ DN VQE GS  K
Sbjct: 97  VRKLKNPQIPSSHQSIFLDNPNCKTLTNNSNNNHHSKKNLYFPQTSYPDNSVQEHGSTIK 156

Query: 112 SSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQ 171
           +SL+LG PSLEL SNGK  L L QQ   +S HYHF QQQQ Q+     QQQQQQ  MK Q
Sbjct: 157 NSLSLGQPSLELSSNGKSPLHLTQQ--GSSNHYHFFQQQQQQRL---LQQQQQQQQMKHQ 211

Query: 172 AEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQ 231
           AE +FR++NSG++LNFDS+SCTPTMSS +SFISSLS+DGSVANLDGSAFHLIGAP SSDQ
Sbjct: 212 AEMLFRRNNSGINLNFDSTSCTPTMSSTKSFISSLSIDGSVANLDGSAFHLIGAPHSSDQ 271

Query: 232 SSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWR 291
           +SQQ KRKCS RG++GS+KCGS+ RCHCSKKRKHRVK++IKVPAISNKLADIPPDDYSWR
Sbjct: 272 NSQQPKRKCSARGDEGSLKCGSSARCHCSKKRKHRVKRAIKVPAISNKLADIPPDDYSWR 331

Query: 292 KYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSA 350
           KYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHP+LP+QSA
Sbjct: 332 KYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSA 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437249|ref|XP_002282258.1| PREDICTED: probable WRKY transcription factor 21 [Vitis vinifera]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 258/350 (73%), Positives = 291/350 (83%), Gaps = 12/350 (3%)

Query: 1   MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHAR 60
           MEEVE+AN+AAVESC++VL LLSQ QDQ+Q K LMVETGEAV RF +VVSLLN G GHAR
Sbjct: 1   MEEVEKANRAAVESCNKVLGLLSQAQDQIQRKKLMVETGEAVVRFNRVVSLLNTGLGHAR 60

Query: 61  VRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPS 120
           VRK +    P+  +I L+ P+ K + PSK  QFL SS  + P+QEMGS AK+++ LGNPS
Sbjct: 61  VRKSKNFQTPLPHNILLDKPNAKQDHPSKTFQFLHSSSLEKPIQEMGSNAKNTMGLGNPS 120

Query: 121 LELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSN 180
           LEL SNGK  LQL Q  PS S +Y FL  QQ         QQ+ Q  MK QA+ M+R+SN
Sbjct: 121 LELTSNGKSPLQLSQLIPS-STNYQFLHHQQ---------QQRLQQQMKHQADTMYRRSN 170

Query: 181 SGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRKC 240
           SG++LNFDSSSCTPTMSS RSFISSLS+DGSVANLDG+AFHLIG P  SDQ+S QHKRKC
Sbjct: 171 SGINLNFDSSSCTPTMSSTRSFISSLSVDGSVANLDGNAFHLIG-PARSDQNSFQHKRKC 229

Query: 241 SGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKG 300
           S RGE+GSVKCGS+GRCHCSKKRKHRVK+SIKVPAISNKLADIPPD+YSWRKYGQKPIKG
Sbjct: 230 S-RGEEGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDEYSWRKYGQKPIKG 288

Query: 301 SPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSA 350
           SPHPRGYYKCSSMRGCPARKHVERCLE+P+MLIVTYEGEHNHPRLPSQSA
Sbjct: 289 SPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPRLPSQSA 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540816|gb|AEQ29021.1| WRKY8, partial [Panax quinquefolius]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/347 (71%), Positives = 289/347 (83%), Gaps = 12/347 (3%)

Query: 3   EVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHARVR 62
           EVEEANKAAVESCHRVLSL+SQPQDQ+QY+NL+VETGEAV +F+KVVSLLN G GHARVR
Sbjct: 2   EVEEANKAAVESCHRVLSLISQPQDQIQYRNLVVETGEAVLKFEKVVSLLNAGLGHARVR 61

Query: 63  KLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLE 122
           K+ K+  P  Q+I L+NP  + +   K +Q L ++  D P+ + GS  +S+LTLGN SLE
Sbjct: 62  KIEKIQTPFPQNILLDNPIGRPDYQPKAIQLLPANSLDTPIHDNGSNVRSTLTLGNSSLE 121

Query: 123 LISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSG 182
           L SNGK  LQ+ QQTP ++ H+              Q+ Q QQ  +K QAE MFR+SNSG
Sbjct: 122 LSSNGKNSLQIPQQTPPSNYHFL------------QQKFQLQQQQLKQQAEMMFRRSNSG 169

Query: 183 VSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSG 242
           ++LNFDSS+CTPTMSS RSFISSLS+DGSVAN++G+AFHLIGA RS DQSS QHKR+CS 
Sbjct: 170 INLNFDSSTCTPTMSSTRSFISSLSVDGSVANMEGNAFHLIGATRSLDQSSYQHKRRCSA 229

Query: 243 RGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSP 302
           +G+DGSVKCGS+GRCHCSKKRKHRVK+SIKVPAISNKLADIPPD+YSWRKYGQKPIKGSP
Sbjct: 230 KGDDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDEYSWRKYGQKPIKGSP 289

Query: 303 HPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQS 349
           HPRGYYKCSSMRGCPARKHVERCLE+P+MLIVTYEGEHNHPR+P QS
Sbjct: 290 HPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPRIPVQS 336

Source: Panax quinquefolius

Species: Panax quinquefolius

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540824|gb|AEQ29025.1| WRKY35 [Panax quinquefolius]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/350 (70%), Positives = 289/350 (82%), Gaps = 12/350 (3%)

Query: 3   EVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHARVR 62
           EVEEANKAAVESCHRVLSL+SQPQDQ+QY+NL+VETGEAV +F+KVVSLLN G GHARVR
Sbjct: 2   EVEEANKAAVESCHRVLSLISQPQDQIQYRNLVVETGEAVLKFEKVVSLLNAGLGHARVR 61

Query: 63  KLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLE 122
           K+ K+  P  Q+I L+NP  + +   K +Q L ++  D P+ + GS  +S+LTLGN SLE
Sbjct: 62  KIEKIQTPFPQNILLDNPIGRPDYQPKAIQLLPANSLDTPIHDNGSNVRSTLTLGNSSLE 121

Query: 123 LISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSG 182
           L SNGK  LQ+ QQTP ++ H+              Q+ Q QQ  +K QAE MFR+SNSG
Sbjct: 122 LSSNGKNSLQIPQQTPPSNYHFL------------QQKFQLQQQQLKQQAEMMFRRSNSG 169

Query: 183 VSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSG 242
           V+LNFDSS+CTPTMSS RSFISS S DGSVAN++G+AFHLIGA RS DQSS QHKR+CS 
Sbjct: 170 VNLNFDSSTCTPTMSSTRSFISSSSADGSVANMEGNAFHLIGATRSLDQSSYQHKRRCSA 229

Query: 243 RGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSP 302
           +G+DGSVKCGS+GRC+CSKKRKHRVK+SIKVPAISNKLADIPPD+YSWRKYGQKPIKGSP
Sbjct: 230 KGDDGSVKCGSSGRCYCSKKRKHRVKRSIKVPAISNKLADIPPDEYSWRKYGQKPIKGSP 289

Query: 303 HPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT 352
           HPRGYYKCSSMRGCPARKHVERCLE+P+MLIVTYEGEHNHPR+P QS TT
Sbjct: 290 HPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPRIPVQSTTT 339

Source: Panax quinquefolius

Species: Panax quinquefolius

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463956|ref|XP_002270614.1| PREDICTED: probable WRKY transcription factor 74-like [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/363 (66%), Positives = 285/363 (78%), Gaps = 12/363 (3%)

Query: 1   MEEVEEANKAAVESCHRVLSLLSQPQDQVQYKNLMVETGEAVFRFKKVVSLLNNGSGHAR 60
           ME VEEANK+AVESCHRVLS L QPQDQVQY+NLM+ET EAVF+FK+VVSLLNNG GH R
Sbjct: 1   MEGVEEANKSAVESCHRVLSFLCQPQDQVQYRNLMMETEEAVFKFKRVVSLLNNGFGHER 60

Query: 61  VRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPS 120
           VRK R+L + + QSIFLE P++K     K LQ L ++F +NP+ E+ S AKSSL +  P 
Sbjct: 61  VRKFRRLRSSLPQSIFLETPNYKPNPSPKPLQLLPTNFLENPLPEIDSKAKSSLQI-TPK 119

Query: 121 L-------ELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHH---MKL 170
           +       +++S+ K  LQ+ QQ PS    +   Q      +   QQ Q+ Q     MK 
Sbjct: 120 IFLESQASDIVSSVKPPLQIVQQKPSQHYQFLQQQHHHHHHQQQQQQIQRIQFQKQQMKY 179

Query: 171 QAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSD 230
           QA+ M+ +SNSG++L FD SSCTPTMSS RSFISSLSMDGSVANLDG++FHLIG P+ SD
Sbjct: 180 QADMMYSRSNSGINLKFDGSSCTPTMSSTRSFISSLSMDGSVANLDGNSFHLIGVPQLSD 239

Query: 231 QSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSW 290
            +S Q +R+CSGRGEDGSVKCGS+G+CHCSK+RK RVK+SIKVPAISNK+ADIPPD+YSW
Sbjct: 240 PNSHQPRRRCSGRGEDGSVKCGSSGKCHCSKRRKLRVKRSIKVPAISNKVADIPPDEYSW 299

Query: 291 RKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPR-LPSQS 349
           RKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLE+P+MLIVTYEGEHNH R L SQS
Sbjct: 300 RKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHSRLLSSQS 359

Query: 350 ATT 352
           A T
Sbjct: 360 AHT 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725433|ref|NP_001237604.1| transcription factor [Glycine max] gi|166203240|gb|ABY84660.1| transcription factor [Glycine max]

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/321 (76%), Positives = 274/321 (85%), Gaps = 7/321 (2%)

Query: 35  MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVN-QSIFLENPHHKT--EIPSKNL 91
           MVETGEAV RFKKVVSLL++G GHARVRK++    P + QSIFL+NP+ KT      KNL
Sbjct: 1   MVETGEAVVRFKKVVSLLHSGMGHARVRKVKNPQIPFSHQSIFLDNPNCKTINNHHFKNL 60

Query: 92  QFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQ 151
           QF Q+SF DN +QE+GS  K+SL+LG PSLEL SNGK  L L QQ  ++S HYHF QQQQ
Sbjct: 61  QFPQTSFPDNSIQELGSTIKNSLSLGQPSLELSSNGKSPLHLTQQ--ASSNHYHFFQQQQ 118

Query: 152 LQQRLLHQQQQQQQHH--MKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMD 209
            QQ+     QQQQQ    MK QAE MFR++NSG++LNFDS+SCT TMSS RSFISSLS+D
Sbjct: 119 QQQQQRLLLQQQQQQQQQMKHQAEMMFRRNNSGINLNFDSTSCTLTMSSTRSFISSLSID 178

Query: 210 GSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKK 269
           GSVANLDGSAFHLIGAP SSDQ+SQQHKRKCS RG++GS+KCGS+ RCHCSKKRKHRVK+
Sbjct: 179 GSVANLDGSAFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSARCHCSKKRKHRVKR 238

Query: 270 SIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEP 329
           +IKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEP
Sbjct: 239 AIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEP 298

Query: 330 TMLIVTYEGEHNHPRLPSQSA 350
           TMLIVTYEGEHNHP+LP+QSA
Sbjct: 299 TMLIVTYEGEHNHPKLPTQSA 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
TAIR|locus:2064377	380	WRKY21 "WRKY DNA-binding prote	0.511	0.473	0.683	9.1e-88
TAIR|locus:2084943	330	WRKY39 "WRKY DNA-binding prote	0.480	0.512	0.628	1.6e-67
TAIR|locus:2148815	330	WRKY74 "WRKY DNA-binding prote	0.491	0.524	0.610	1.6e-65
UNIPROTKB|Q32SG4	397	Q32SG4 "Protein WRKY1" [Zea ma	0.471	0.418	0.571	2.6e-61
TAIR|locus:2046653	321	WRKY17 "WRKY DNA-binding prote	0.485	0.532	0.470	2.2e-42
TAIR|locus:2125239	325	WRKY11 "WRKY DNA-binding prote	0.463	0.501	0.485	2.2e-40
TAIR|locus:2135967	353	WRKY7 "WRKY DNA-binding protei	0.417	0.416	0.469	2.4e-37
TAIR|locus:2058568	317	WRKY15 "WRKY DNA-binding prote	0.471	0.523	0.465	1.5e-33
TAIR|locus:2029919	259	WRKY65 "WRKY DNA-binding prote	0.190	0.258	0.661	2.3e-23
TAIR|locus:2044777	427	WRKY35 "WRKY DNA-binding prote	0.210	0.173	0.589	1.7e-21

TAIR|locus:2064377 WRKY21 "WRKY DNA-binding protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 9.1e-88, Sum P(2) = 9.1e-88
 Identities = 125/183 (68%), Positives = 146/183 (79%)

Query:   172 AEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDG-SAFHLIGAPRSSD 230
             AE M RK N G+SL+FD+SSCTPTMSS RSF+SSLS+DGSVAN++G ++FH  G P S+D
Sbjct:   199 AELMLRKCNGGISLSFDNSSCTPTMSSTRSFVSSLSIDGSVANIEGKNSFHF-GVPSSTD 257

Query:   231 QSSQQHKRKCSGRGED-GSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYS 289
             Q+S   KRKC  +G++ GS+KCGS+ R                 PAISNK+ADIPPDDYS
Sbjct:   258 QNSLHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYS 317

Query:   290 WRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQS 349
             WRKYGQKPIKGSP+PRGYYKCSSMRGCPARKHVERCLE+P MLIVTYE EHNHP+LPSQ+
Sbjct:   318 WRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHPKLPSQA 377

Query:   350 ATT 352
              TT
Sbjct:   378 ITT 380

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2084943 WRKY39 "WRKY DNA-binding protein 39" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
 Identities = 115/183 (62%), Positives = 134/183 (73%)

Query:   176 FRKSNSGVSLNFDSS--SC-TPTMSS-NRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQ 231
             + +SNSGV+L FD S  SC TP++S+ +RSF+SSLSMD SV + D ++FHL G  R SDQ
Sbjct:   156 YSRSNSGVNLKFDGSGSSCYTPSVSNGSRSFVSSLSMDASVTDYDRNSFHLTGLSRGSDQ 215

Query:   232 SSQQHKRK-CSGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSW 290
                QH RK CSG     S+KCGS  +                 PAISNK+ADIPPD+YSW
Sbjct:   216 ---QHTRKMCSG-----SLKCGSRSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSW 267

Query:   291 RKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPR-LPSQS 349
             RKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC++E +MLIVTYEGEHNH R L SQS
Sbjct:   268 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNHSRILSSQS 327

Query:   350 ATT 352
             A T
Sbjct:   328 AHT 330

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2148815 WRKY74 "WRKY DNA-binding protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 113/185 (61%), Positives = 136/185 (73%)

Query:   175 MFRKSNSGVSLNFDSS---SC-TPTMSS-NRSFISSLSMDGSVANLDGSAFHLIGAPRSS 229
             ++ +S SG++L FD S   SC +P++S+ +RSF+SSLSMDGSV + D ++FHLIG P+ S
Sbjct:   151 VYSRSKSGLNLKFDGSIGASCYSPSISNGSRSFVSSLSMDGSVTDYDRNSFHLIGLPQGS 210

Query:   230 DQSSQQHKR-KCSGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDY 288
             D  SQ  +R  CSG     S+KCGS  +                 PAISNK+ADIPPD+Y
Sbjct:   211 DHISQHSRRTSCSG-----SLKCGSKSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEY 265

Query:   289 SWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPR-LPS 347
             SWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC+EE +MLIVTYEGEHNH R L S
Sbjct:   266 SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNHSRILSS 325

Query:   348 QSATT 352
             QSA T
Sbjct:   326 QSAHT 330

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

UNIPROTKB|Q32SG4 Q32SG4 "Protein WRKY1" [Zea mays (taxid:4577)]

 Score = 509 (184.2 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 100/175 (57%), Positives = 128/175 (73%)

Query:   182 GVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSA----FHLIGAPR--SSDQSSQQ 235
             GV+L FDSS+CT   SS+RSF+SSLSM+GS+A+LDGS     F L+   +  S+ +    
Sbjct:   226 GVNLKFDSSNCTA--SSSRSFLSSLSMEGSLASLDGSRTSRPFQLLSGSQTASTPELGLV 283

Query:   236 HKRKCSGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQ 295
              +R+C+GR EDG+ +C +  R                 PAISNK+ADIP D++SWRKYGQ
Sbjct:   284 QRRRCAGR-EDGTGRCATGSRCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQ 342

Query:   296 KPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSA 350
             KPIKGSPHPRGYYKCSS+RGCPARKHVERC+++P+MLIVTYEG+HNH R+ +Q A
Sbjct:   343 KPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVLAQPA 397

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2046653 WRKY17 "WRKY DNA-binding protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 88/187 (47%), Positives = 111/187 (59%)

Query:   178 KSNSGVSLNFDSSSCTPTMSSNRSFISS-LSMDGSVANLDGSAFHLIGAPR----SSDQ- 231
             K+ S   + F   S +  +SSN SF+SS ++ DGSV+   GS+  L  AP     SS + 
Sbjct:   128 KTKSSEVVEFAKESFS--VSSNSSFMSSAITGDGSVSK--GSSIFLAPAPAVPVTSSGKP 183

Query:   232 --SSQQHKRKC----SGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPP 285
               S   ++++C       G  G +    NG+                 PA+S K+ADIPP
Sbjct:   184 PLSGLPYRKRCFEHDHSEGFSGKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPP 243

Query:   286 DDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRL 345
             D+YSWRKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVER L++ TMLIVTYEGEH H + 
Sbjct:   244 DEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRHHQS 303

Query:   346 PSQSATT 352
               Q   T
Sbjct:   304 TMQEHVT 310

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2125239 WRKY11 "WRKY DNA-binding protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 85/175 (48%), Positives = 102/175 (58%)

Query:   172 AEKMFRKSNSGVSLN--FDSSSCTP--TMSSNRSFISSLSMDGSVANLDGSAFHLIGAPR 227
             AE  F K N  VSLN  F SS+ T   ++S+ + F++S  +     N  G    L G P 
Sbjct:   137 AELEFSKENFSVSLNSSFMSSAITGDGSVSNGKIFLASAPLQP--VNSSGKP-PLAGHPY 193

Query:   228 SSDQSSQQHKRKCSGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDD 287
                    +H    SG+     V   + G+                 PAIS K+ADIPPD+
Sbjct:   194 RKRCLEHEHSESFSGK-----VSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDE 248

Query:   288 YSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 342
             YSWRKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVER L++P MLIVTYEGEH H
Sbjct:   249 YSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRH 303

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2135967 WRKY7 "WRKY DNA-binding protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 77/164 (46%), Positives = 99/164 (60%)

Query:   184 SLNFDSSSCTPTMSSNRSFISSLSMDGSVANLD-GSAF----HLIGAPRSSDQSSQQHKR 238
             ++NF  S   P +S+  SF+SS   D    ++  G  F     L G+      SS   KR
Sbjct:   187 TINFAPS---PPVSATNSFMSSHRCDTDSTHMSSGFEFTNPSQLSGSRGKPPLSSASLKR 243

Query:   239 KCSGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQKPI 298
             +C+      S +C  + +                 PA+S+K+ADIP D++SWRKYGQKPI
Sbjct:   244 RCNS---SPSSRCHCSKKRKSRVKRVIRV------PAVSSKMADIPSDEFSWRKYGQKPI 294

Query:   299 KGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 342
             KGSPHPRGYYKCSS+RGCPARKHVER L++  MLIVTYEG+HNH
Sbjct:   295 KGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNH 338

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA;IPI

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2058568 WRKY15 "WRKY DNA-binding protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 81/174 (46%), Positives = 99/174 (56%)

Query:   174 KMFRK---SNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSD 230
             +M RK   S+S  +++F S S   T S N+  I         A        L     S  
Sbjct:   127 QMIRKGSFSSSMKTIDFSSLSSVTTESDNQKKIHHHQRPSETAPFASQTQSLSTTVSSFS 186

Query:   231 QSSQQHKRKCSGRGE-DGS-VKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDY 288
             +S+   KRKC+      G      S+GR                 PAIS K++D+PPDDY
Sbjct:   187 KST---KRKCNSENLLTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDY 243

Query:   289 SWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 342
             SWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVER  ++ +MLIVTYEG+HNH
Sbjct:   244 SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNH 297

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2029919 WRKY65 "WRKY DNA-binding protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 45/68 (66%), Positives = 56/68 (82%)

Query:   284 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHP 343
             P D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER  ++PTM+++TY  EHNHP
Sbjct:    73 PSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHP 132

Query:   344 RLPSQSAT 351
               P  S+T
Sbjct:   133 -WPLTSST 139

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2044777 WRKY35 "WRKY DNA-binding protein 35" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 46/78 (58%), Positives = 57/78 (73%)

Query:   274 PAISNKLAD---IPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPT 330
             PA  N  +    +P D ++WRKYGQKPIKGSP+PRGYY+CSS +GC ARK VER   +P 
Sbjct:   201 PAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPN 260

Query:   331 MLIVTYEGEHNHPRLPSQ 348
             ML++TY  EHNHP  P+Q
Sbjct:   261 MLVITYTSEHNHP-WPTQ 277

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04336	WRK21_ARATH	No assigned EC number	0.5766	0.9857	0.9131	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_V1110 hypothetical protein (348 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
smart00774	59	smart00774, WRKY, DNA binding domain	1e-34
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-33
pfam10533	47	pfam10533, Plant_zn_clust, Plant zinc cluster doma	5e-17

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  120 bits (304), Expect = 1e-34
 Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 285 PDD-YSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 342
            DD Y WRKYGQK IKGSP+PR YY+C+  +GCPA+K V+R  ++P+++ VTYEGEH H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  117 bits (295), Expect = 3e-33
 Identities = 37/61 (60%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 284 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHP 343
             D Y+WRKYGQKP+KGSP PR YY+C+S  GCP +K VER  ++P ++ +TYEGEHNHP
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTS-PGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Query: 344 R 344
           +
Sbjct: 60  K 60

Length = 60

>gnl|CDD|192617 pfam10533, Plant_zn_clust, Plant zinc cluster domain

 Score = 73.6 bits (181), Expect = 5e-17
 Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 1/47 (2%)

Query: 237 KRKCSGRG-EDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLAD 282
           K++CS     +G     S+GRCHCSKKRK RVK++I+VPAIS+K+AD
Sbjct: 1   KKRCSEANDSEGKCAASSSGRCHCSKKRKSRVKRTIRVPAISSKIAD 47

This zinc binding domain was identified by Babu and colleagues and found associated with the WRKY domain pfam03106. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
PF10533	47	Plant_zn_clust: Plant zinc cluster domain; InterPr	99.32
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	92.37
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	91.23

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=8.9e-31  Score=199.57  Aligned_cols=59  Identities=59%  Similarity=1.198  Sum_probs=56.6

Q ss_pred             CCCCccccccCCCCCCCCCCCCcceeccCCCCCCcccceeecCCCCcEEEEEEeccCCC
Q 018654          284 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH  342 (352)
Q Consensus       284 ~~Dgy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H  342 (352)
                      ++|||.|||||||.|+|+++||+||||++.+||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            37999999999999999999999999996589999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=2.8e-31  Score=202.45  Aligned_cols=60  Identities=63%  Similarity=1.301  Sum_probs=51.9

Q ss_pred             CCCCccccccCCCCCCCCCCCCcceeccCCCCCCcccceeecCCCCcEEEEEEeccCCCCC
Q 018654          284 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPR  344 (352)
Q Consensus       284 ~~Dgy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H~~  344 (352)
                      ++|||+|||||||.|+|+++||+||||++ .+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~-~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTH-PGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEEC-TTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccc-cChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            37999999999999999999999999995 6999999999999999999999999999974

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF10533 Plant_zn_clust: Plant zinc cluster domain; InterPro: IPR018872 This zinc binding domain is found associated with the WRKY domain IPR003657 from INTERPRO []

Probab=99.32  E-value=9.6e-13  Score=96.52  Aligned_cols=46  Identities=65%  Similarity=1.189  Sum_probs=38.3

Q ss_pred             ccccCCCCCC-CCCccCCCCcccccccccccccceeEeecccCCCCC
Q 018654          237 KRKCSGRGED-GSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLAD  282 (352)
Q Consensus       237 kr~c~~~~~~-~~~k~~~~~r~~~skrrK~r~kr~i~vpa~s~~~~d  282 (352)
                      |++|.+.+++ +..+++++|+|||+||||.|+||+|+|||||++++|
T Consensus         1 krkC~~~~~~~~~~~~sssgrCHCsKkRK~RvKR~irVPAiS~K~AD   47 (47)
T PF10533_consen    1 KRKCHSHNDSSGKCKCSSSGRCHCSKKRKSRVKRTIRVPAISSKIAD   47 (47)
T ss_pred             CCcccccCcccCccccCCCCcccCCCcccccceeeEEeecccccccC
Confidence            5789876543 333468899999999999999999999999999875

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=92.37  E-value=0.12  Score=40.82  Aligned_cols=33  Identities=36%  Similarity=0.600  Sum_probs=27.1

Q ss_pred             CCCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 018654          313 MRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLP  346 (352)
Q Consensus       313 ~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H~~~~  346 (352)
                      ..||+|+=.|.+.. |....++.+..+|||+..|
T Consensus        59 ktgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P   91 (91)
T PF03101_consen   59 KTGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP   91 (91)
T ss_pred             ccCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence            35899998888766 7777778899999999754

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.23  E-value=0.099  Score=37.86  Aligned_cols=48  Identities=31%  Similarity=0.605  Sum_probs=23.9

Q ss_pred             CCCccccccCCCCCCCCCCCCcceeccCC--CCCCcccceeecCCCCcEEEEEEeccCCC
Q 018654          285 PDDYSWRKYGQKPIKGSPHPRGYYKCSSM--RGCPARKHVERCLEEPTMLIVTYEGEHNH  342 (352)
Q Consensus       285 ~Dgy~WRKYGQK~Ikgs~~pRsYYrCs~~--~gC~ArK~Ver~~ddp~~~~VtY~G~H~H  342 (352)
                      -|||.-.++...      ....|++|+..  .+|+|+=.+.  .++.. + +...++|||
T Consensus        13 ~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~~-~-~~~~~~HnH   62 (62)
T PF04500_consen   13 YDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDGR-V-VRTNGEHNH   62 (62)
T ss_dssp             ETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TTE-E-EE-S---SS
T ss_pred             ECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCCE-E-EECCCccCC
Confidence            588877765554      33589999962  3799977776  34443 3 345699998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		3e-17
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-15

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 277 SNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTY 336
           +  L DI  D Y WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER   +  +LI TY
Sbjct: 7   TQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKLLITTY 65
Query: 337 EGEHNH 342
           EG+H+H
Sbjct: 66  EGKHDH 71

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 282 DIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHN 341
           D+  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVER   +P  ++ TYEG+HN
Sbjct: 15  DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHN 73
Query: 342 H 342
           H
Sbjct: 74  H 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-36
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  126 bits (317), Expect = 1e-36
 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 272 KVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTM 331
           ++   +  L DI  D Y WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER   +  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKL 60

Query: 332 LIVTYEGEHNHPRLP 346
           LI TYEG+H+H   P
Sbjct: 61  LITTYEGKHDHDMPP 75

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  123 bits (311), Expect = 1e-35
 Identities = 35/63 (55%), Positives = 45/63 (71%), Gaps = 1/63 (1%)

Query: 281 ADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEH 340
            D+  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVER   +P  ++ TYEG+H
Sbjct: 14  VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKH 72

Query: 341 NHP 343
           NH 
Sbjct: 73  NHD 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 23/158 (14%), Positives = 35/158 (22%), Gaps = 52/158 (32%)

Query: 74  SIFLENPHHKTEIPSKNLQFL-QSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQ 132
           S+F  +      IP+  L  +       + +  +  L K SL    P    IS       
Sbjct: 379 SVFPPS----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS------- 427

Query: 133 LGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSC 192
                              +   L  + + +   H  +       K        FDS   
Sbjct: 428 -----------IP-----SIYLELKVKLENEYALHRSIVDHYNIPK-------TFDSDDL 464

Query: 193 TPTMSSN--RSFISSLSMDGSVANLDGSAFHLIGAPRS 228
            P        S I                 HL      
Sbjct: 465 IPPYLDQYFYSHI---------------GHHLKNIEHP 487

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 56/353 (15%), Positives = 106/353 (30%), Gaps = 88/353 (24%)

Query: 2   EEVEE--ANKAAVESCHRVL-SLLSQPQDQVQYKNLMVETGEAV---FRFKKVVSLLNNG 55
           EE++    +K AV    R+  +LLS+ ++ VQ     VE    +   F    + +     
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK---FVEEVLRINYKFLMSPIKTEQRQP 105

Query: 56  SGHAR--VRKLRKLPNPVNQSI---FLENPHHKTEIPSKNLQFLQSSFHDN-PVQEMGSL 109
           S   R  + +  +L N  NQ      +       ++  + L  L+     N  +  +   
Sbjct: 106 SMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKL-RQALLELRP--AKNVLIDGVLGS 161

Query: 110 AKSSLT---LGNPSLELISNGKQH-LQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQ 165
            K+ +      +  ++   + K   L L       S        Q+L  ++      +  
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNC---NSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 166 HHM--------------KLQAEKMFRKS--------NSGVSLNFDSSSCTPTM--SSNRS 201
           H                +L   K +           N+     F+  SC   +  +  + 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCK-ILLTTRFKQ 276

Query: 202 FISSLSMDGSV--------------------AN-LDGSAFHLIGAPRSSDQSSQQHKRKC 240
               LS   +                        LD     L   PR   +    + R+ 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PR---EVLTTNPRRL 330

Query: 241 SGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKY 293
           S   E  S++   +G       +     K   +  I + L  + P +Y  RK 
Sbjct: 331 SIIAE--SIR---DGLATWDNWKHVNCDKLTTI--IESSLNVLEPAEY--RKM 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.97
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.97

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.97  E-value=4.6e-33  Score=220.42  Aligned_cols=67  Identities=60%  Similarity=1.142  Sum_probs=63.3

Q ss_pred             CCCCCCCCCccccccCCCCCCCCCCCCcceeccCCCCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 018654          279 KLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLP  346 (352)
Q Consensus       279 ~~~di~~Dgy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H~~~~  346 (352)
                      ...++++|||+|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            4568999999999999999999999999999995 899999999999999999999999999999864

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.97  E-value=1.2e-32  Score=218.97  Aligned_cols=67  Identities=52%  Similarity=1.033  Sum_probs=63.1

Q ss_pred             CCCCCCCCCccccccCCCCCCCCCCCCcceeccCCCCCCcccceeecCCCCcEEEEEEeccCCCCCCC
Q 018654          279 KLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLP  346 (352)
Q Consensus       279 ~~~di~~Dgy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H~~~~  346 (352)
                      ...++++|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus        12 s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           12 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            4568899999999999999999999999999995 899999999999999999999999999999863

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	8e-29

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  104 bits (261), Expect = 8e-29
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 2/67 (2%)

Query: 281 ADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEH 340
            D+  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVER   +P  ++ TYEG+H
Sbjct: 7   VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKH 65

Query: 341 NHPRLPS 347
           NH   P+
Sbjct: 66  NHDL-PA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.97

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=5e-33  Score=215.73  Aligned_cols=65  Identities=54%  Similarity=1.063  Sum_probs=61.7

Q ss_pred             CCCCCCCCccccccCCCCCCCCCCCCcceeccCCCCCCcccceeecCCCCcEEEEEEeccCCCCCC
Q 018654          280 LADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRL  345 (352)
Q Consensus       280 ~~di~~Dgy~WRKYGQK~Ikgs~~pRsYYrCs~~~gC~ArK~Ver~~ddp~~~~VtY~G~H~H~~~  345 (352)
                      ..++++|||.|||||||.|+|++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus         6 ~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           6 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            357889999999999999999999999999995 89999999999999999999999999999875