Citrus Sinensis ID: 018661

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKLGAKPSKPKISSDAALKLVACQFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWELVTD
ccccccccccccccHHHHHHHHHcccccccccccccccccccccEEEcccEEccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEEEcccccEEEEEccccccccEEEEEEEEEccHHHHHHHHHHHHHcccccEEEEEEcccEEEEccccccEEcccccccccccEEEEEEEccEEEEEEEEccccccccEEEEEccccccccccEEEccccccEEEcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEcccccccccEEEEEEccccccEEEEEccccEEEEEEEccccEEccc
ccccccccccHHHHHHHHHHHHHHHccHHHccHHHHccccccccEEEEEcEEcccEEccccHccccccccccccccccccccHHHHHHHHHHcccccccccccccccEEEcccccEEEEEEcccccEEEEccccccccEEEEEccEEccHHHHHHHHHHHHHccccEEEEEEEcccEEEEccccccccHEEcccccccccEEEEEEccEEEEEEEEEEccccccEEEEEEEEEEcccccEEEccccccccEEcccccccccccHHHHHHHHHHHHccccHccccccccccccccccccccccEEEEccccccEEEEEEEEHHHcccccEEEEccccEEEEEccccccEEccc
mpaakknsdnsriGHAFNKLLKQignpvefelpdwfikpkaipyvfIKRNIYLTKRIKRrleddgifcsctaspgssgvcdrdchcgmllsscssgckcgnsclnkpfqnrpvkkmklvqtekcgagivadedikRGEFVIEYVGEVIDDQTCEERLWKMKhlgetnfylCEINRDMVIDAtykgnksryinhsccpnteMQKWIIdgetrigifatrdikkgenltyDYQFVqfgadqdchcgaagcrrklgakpskpkissDAALKLVACQFyqngdlhigssrppynqrqicpqccigkvirishpknessfgiirrfdeysrkhsvlfedgesefiDMAKVDWELVTD
mpaakknsdnsriGHAFNKLLKQIGNPVEFELPDwfikpkaipyvfiKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSclnkpfqnrpvKKMKLVQTEkcgagivadedikrGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKLGAKPSKPKISSDAALKLVACQFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIrishpknessfgiiRRFDEYSRKHSvlfedgesefidmAKVDWELVTD
MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHcgmllsscssgckcgnsclNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKLGAKPSKPKISSDAALKLVACQFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWELVTD
*************GHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKL************AALKLVACQFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWEL***
*****************************FELPDWFIKPKAIPYVFIKRNIYLTKRIK***EDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKL****************************************************RISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWELV**
**********SRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCR************SSDAALKLVACQFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWELVTD
**********SRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKLGAK*************************************QICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWELVTD
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKLGAKPSKPKISSDAALKLVACQFYQNGDLHIGSSRPPYNQRQICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWELVTD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query352 2.2.26 [Sep-21-2011]
Q945S8363 Histone-lysine N-methyltr yes no 0.994 0.964 0.696 1e-135
Q9M1X9352 Putative histone-lysine N no no 0.954 0.954 0.571 2e-98
Q949T8497 Histone-lysine N-methyltr no no 0.636 0.450 0.495 2e-60
Q2LAE1 1759 Histone-lysine N-methyltr no no 0.605 0.121 0.407 9e-40
Q9BYW2 2564 Histone-lysine N-methyltr yes no 0.602 0.082 0.377 7e-39
Q9VYD1 2313 Probable histone-lysine N yes no 0.602 0.091 0.408 1e-38
Q9BZ951437 Histone-lysine N-methyltr no no 0.613 0.150 0.380 4e-36
Q6P2L61439 Histone-lysine N-methyltr no no 0.673 0.164 0.360 6e-36
Q96L73 2696 Histone-lysine N-methyltr no no 0.559 0.073 0.391 3e-35
Q8BVE81365 Histone-lysine N-methyltr no no 0.613 0.158 0.389 3e-35
>sp|Q945S8|ASHH3_ARATH Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3 PE=2 SV=2 Back     alignment and function desciption
 Score =  481 bits (1239), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/363 (69%), Positives = 294/363 (80%), Gaps = 13/363 (3%)

Query: 1   MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRR 60
           MPA+KK SD + +G  F+KLL QIG   EFELP+W  K K  PY+FI+RNIYLTK++KRR
Sbjct: 1   MPASKKISDRNHLGQVFDKLLNQIGESEEFELPEWLNKGKPTPYIFIRRNIYLTKKVKRR 60

Query: 61  LEDDGIFCSCTASPGSS--GVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKL 118
           +EDDGIFCSC++S   S   VC  +CHCGML SSCSS CKCG+ C NKPFQ R VKKMKL
Sbjct: 61  VEDDGIFCSCSSSSPGSSSTVCGSNCHCGMLFSSCSSSCKCGSECNNKPFQQRHVKKMKL 120

Query: 119 VQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMV 178
           +QTEKCG+GIVA+E+I+ GEF+IEYVGEVIDD+TCEERLWKMKH GETNFYLCEI RDMV
Sbjct: 121 IQTEKCGSGIVAEEEIEAGEFIIEYVGEVIDDKTCEERLWKMKHRGETNFYLCEITRDMV 180

Query: 179 IDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGAD 238
           IDAT+KGNKSRYINHSC PNT+MQKWIIDGETRIGIFATR IKKGE+LTYDYQFVQFGAD
Sbjct: 181 IDATHKGNKSRYINHSCNPNTQMQKWIIDGETRIGIFATRGIKKGEHLTYDYQFVQFGAD 240

Query: 239 QDCHCGAAGCRRKLGAKPSKPKISSDAALKLVACQF-------YQNG--DLHI--GSSRP 287
           QDCHCGA GCRRKLG KPSKPKI+SD A  LVA +        +QNG  + HI  G S  
Sbjct: 241 QDCHCGAVGCRRKLGVKPSKPKIASDEAFNLVAHELAQTLPKVHQNGLVNRHIDAGKSWN 300

Query: 288 PYNQRQICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDW 347
             +QR  C + CIG VIR+S P ++  FG++R FDEYSRKHSV+FEDG +EF+DM++ DW
Sbjct: 301 NLSQRDTCSRNCIGVVIRLSRPTSDRCFGLVRHFDEYSRKHSVMFEDGVTEFVDMSREDW 360

Query: 348 ELV 350
           E+V
Sbjct: 361 EIV 363
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q9M1X9|ASHH4_ARATH Putative histone-lysine N-methyltransferase ASHH4 OS=Arabidopsis thaliana GN=ASHH4 PE=3 SV=1 Back     alignment and function description
>sp|Q949T8|ASHR3_ARATH Histone-lysine N-methyltransferase ASHR3 OS=Arabidopsis thaliana GN=ASHR3 PE=1 SV=1 Back     alignment and function description
>sp|Q2LAE1|ASHH2_ARATH Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2 PE=1 SV=1 Back     alignment and function description
>sp|Q9BYW2|SETD2_HUMAN Histone-lysine N-methyltransferase SETD2 OS=Homo sapiens GN=SETD2 PE=1 SV=3 Back     alignment and function description
>sp|Q9VYD1|C1716_DROME Probable histone-lysine N-methyltransferase CG1716 OS=Drosophila melanogaster GN=Set2 PE=1 SV=2 Back     alignment and function description
>sp|Q9BZ95|NSD3_HUMAN Histone-lysine N-methyltransferase NSD3 OS=Homo sapiens GN=WHSC1L1 PE=1 SV=1 Back     alignment and function description
>sp|Q6P2L6|NSD3_MOUSE Histone-lysine N-methyltransferase NSD3 OS=Mus musculus GN=Whsc1l1 PE=1 SV=2 Back     alignment and function description
>sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BVE8|NSD2_MOUSE Histone-lysine N-methyltransferase NSD2 OS=Mus musculus GN=Whsc1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
224117806351 SET domain protein [Populus trichocarpa] 0.994 0.997 0.789 1e-162
449505027373 PREDICTED: histone-lysine N-methyltransf 0.994 0.938 0.749 1e-160
449442399373 PREDICTED: histone-lysine N-methyltransf 0.994 0.938 0.749 1e-160
356530969349 PREDICTED: histone-lysine N-methyltransf 0.985 0.994 0.777 1e-157
356559949349 PREDICTED: histone-lysine N-methyltransf 0.985 0.994 0.777 1e-155
297737225438 unnamed protein product [Vitis vinifera] 0.997 0.801 0.766 1e-151
359489946377 PREDICTED: histone-lysine N-methyltransf 0.985 0.920 0.736 1e-148
297824409363 SET domain-containing protein [Arabidops 0.994 0.964 0.699 1e-135
18406465363 histone-lysine N-methyltransferase ASHH3 0.994 0.964 0.696 1e-133
357498513348 Histone-lysine N-methyltransferase ASHH3 0.974 0.985 0.691 1e-131
>gi|224117806|ref|XP_002331636.1| SET domain protein [Populus trichocarpa] gi|222874032|gb|EEF11163.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/351 (78%), Positives = 308/351 (87%), Gaps = 1/351 (0%)

Query: 1   MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRR 60
           MPAAKKN D  RI  AFNKLLK+IGN VEFELPD F K K+  Y  IKRNIYLTK+IKRR
Sbjct: 1   MPAAKKNLDQ-RITLAFNKLLKEIGNQVEFELPDAFNKSKSTAYTLIKRNIYLTKKIKRR 59

Query: 61  LEDDGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQ 120
           LEDDGIFCSC+AS GSS VCDRDCHCGMLLSSCSSGCKCG+SC NKPFQ+RP+KKMKLVQ
Sbjct: 60  LEDDGIFCSCSASLGSSRVCDRDCHCGMLLSSCSSGCKCGSSCSNKPFQHRPLKKMKLVQ 119

Query: 121 TEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVID 180
           TEKCG+GIVADEDIK+GEFVIEYVGEVIDD TCEERLWKMKH GETNFYLCEINR+MVID
Sbjct: 120 TEKCGSGIVADEDIKQGEFVIEYVGEVIDDNTCEERLWKMKHRGETNFYLCEINRNMVID 179

Query: 181 ATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQD 240
           ATYKGNKSRYINHSC PNTEMQKWIIDGETRIGIFAT DI+KGE+LTYDYQFVQFGADQD
Sbjct: 180 ATYKGNKSRYINHSCSPNTEMQKWIIDGETRIGIFATHDIRKGEHLTYDYQFVQFGADQD 239

Query: 241 CHCGAAGCRRKLGAKPSKPKISSDAALKLVACQFYQNGDLHIGSSRPPYNQRQICPQCCI 300
           CHCGA+GCR+KLG KPSKPK+SSDAALKLVACQ YQNG LHIGSS+  ++        CI
Sbjct: 240 CHCGASGCRKKLGVKPSKPKMSSDAALKLVACQVYQNGGLHIGSSQHAFSSLPTYSCNCI 299

Query: 301 GKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDWELVT 351
           G+V+R+    ++  FGII+++DEYSRKHS++FEDG  +F+DM+K DWE VT
Sbjct: 300 GEVVRLCSRTDQIYFGIIKQYDEYSRKHSIMFEDGTVKFLDMSKEDWEFVT 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449505027|ref|XP_004162355.1| PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449442399|ref|XP_004138969.1| PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530969|ref|XP_003534051.1| PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Glycine max] Back     alignment and taxonomy information
>gi|356559949|ref|XP_003548258.1| PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Glycine max] Back     alignment and taxonomy information
>gi|297737225|emb|CBI26426.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489946|ref|XP_002268035.2| PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297824409|ref|XP_002880087.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325926|gb|EFH56346.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18406465|ref|NP_566010.1| histone-lysine N-methyltransferase ASHH3 [Arabidopsis thaliana] gi|94707125|sp|Q945S8.2|ASHH3_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHH3; AltName: Full=ASH1 homolog 3; AltName: Full=Protein SET DOMAIN GROUP 7 gi|15028059|gb|AAK76560.1| unknown protein [Arabidopsis thaliana] gi|20197070|gb|AAC23419.2| expressed protein [Arabidopsis thaliana] gi|20259301|gb|AAM14386.1| unknown protein [Arabidopsis thaliana] gi|330255289|gb|AEC10383.1| histone-lysine N-methyltransferase ASHH3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357498513|ref|XP_003619545.1| Histone-lysine N-methyltransferase ASHH3 [Medicago truncatula] gi|355494560|gb|AES75763.1| Histone-lysine N-methyltransferase ASHH3 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
TAIR|locus:2051769363 ASHH3 "histone-lysine N-methyl 0.994 0.964 0.666 1.2e-129
TAIR|locus:2080462352 ASHH4 "histone-lysine N-methyl 0.960 0.960 0.541 2.3e-94
TAIR|locus:2126714497 SDG4 "SET domain group 4" [Ara 0.636 0.450 0.456 8.9e-54
DICTYBASE|DDB_G0268132898 DDB_G0268132 "SET domain-conta 0.661 0.259 0.373 4.1e-36
FB|FBgn0030486 2313 Set2 "Set2" [Drosophila melano 0.676 0.102 0.352 3.5e-33
ZFIN|ZDB-GENE-080519-3 2055 nsd1a "nuclear receptor bindin 0.653 0.111 0.356 4.4e-33
UNIPROTKB|F1NTN0 2069 SETD2 "Uncharacterized protein 0.659 0.112 0.342 8.1e-33
UNIPROTKB|F1MDT8 2538 SETD2 "Uncharacterized protein 0.644 0.089 0.345 2.2e-32
UNIPROTKB|J9P6F3850 WHSC1L1 "Uncharacterized prote 0.633 0.262 0.346 2.7e-32
UNIPROTKB|H7C3H4 1675 SETD2 "Histone-lysine N-methyl 0.619 0.130 0.350 3.4e-32
TAIR|locus:2051769 ASHH3 "histone-lysine N-methyltransferase ASHH3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
 Identities = 242/363 (66%), Positives = 282/363 (77%)

Query:     1 MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRR 60
             MPA+KK SD + +G  F+KLL QIG   EFELP+W  K K  PY+FI+RNIYLTK++KRR
Sbjct:     1 MPASKKISDRNHLGQVFDKLLNQIGESEEFELPEWLNKGKPTPYIFIRRNIYLTKKVKRR 60

Query:    61 LEDDGIFCSCTAS-PGSSG-VCDRDCHXXXXXXXXXXXXXXXXXXXNKPFQNRPVKKMKL 118
             +EDDGIFCSC++S PGSS  VC  +CH                   NKPFQ R VKKMKL
Sbjct:    61 VEDDGIFCSCSSSSPGSSSTVCGSNCHCGMLFSSCSSSCKCGSECNNKPFQQRHVKKMKL 120

Query:   119 VQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMV 178
             +QTEKCG+GIVA+E+I+ GEF+IEYVGEVIDD+TCEERLWKMKH GETNFYLCEI RDMV
Sbjct:   121 IQTEKCGSGIVAEEEIEAGEFIIEYVGEVIDDKTCEERLWKMKHRGETNFYLCEITRDMV 180

Query:   179 IDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGAD 238
             IDAT+KGNKSRYINHSC PNT+MQKWIIDGETRIGIFATR IKKGE+LTYDYQFVQFGAD
Sbjct:   181 IDATHKGNKSRYINHSCNPNTQMQKWIIDGETRIGIFATRGIKKGEHLTYDYQFVQFGAD 240

Query:   239 QDCHCGAAGCRRKLGAKPSKPKISSDAALKLVACQF-------YQNG--DLHI--GSSRP 287
             QDCHCGA GCRRKLG KPSKPKI+SD A  LVA +        +QNG  + HI  G S  
Sbjct:   241 QDCHCGAVGCRRKLGVKPSKPKIASDEAFNLVAHELAQTLPKVHQNGLVNRHIDAGKSWN 300

Query:   288 PYNQRQICPQCCIGKVIRISHPKNESSFGIIRRFDEYSRKHSVLFEDGESEFIDMAKVDW 347
               +QR  C + CIG VIR+S P ++  FG++R FDEYSRKHSV+FEDG +EF+DM++ DW
Sbjct:   301 NLSQRDTCSRNCIGVVIRLSRPTSDRCFGLVRHFDEYSRKHSVMFEDGVTEFVDMSREDW 360

Query:   348 ELV 350
             E+V
Sbjct:   361 EIV 363
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2080462 ASHH4 "histone-lysine N-methyltransferase ASHH4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126714 SDG4 "SET domain group 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268132 DDB_G0268132 "SET domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0030486 Set2 "Set2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080519-3 nsd1a "nuclear receptor binding SET domain protein 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NTN0 SETD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MDT8 SETD2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6F3 WHSC1L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|H7C3H4 SETD2 "Histone-lysine N-methyltransferase SETD2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q945S8ASHH3_ARATH2, ., 1, ., 1, ., 4, 30.69690.99430.9641yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.979
3rd Layer2.1.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
SDG919
SET domain protein (351 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 6e-46
pfam00856113 pfam00856, SET, SET domain 6e-33
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 5e-17
smart0057050 smart00570, AWS, associated with SET domains 4e-12
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  152 bits (386), Expect = 6e-46
 Identities = 56/124 (45%), Positives = 75/124 (60%)

Query: 114 KKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEI 173
            K+++ ++   G G+ A EDI +GEF+ EYVGE+I  +  EER       G   FYL +I
Sbjct: 1   NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDI 60

Query: 174 NRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFV 233
           + D+ IDA  KGN +R+INHSC PN E+    ++G+ RI IFA RDIK GE LT DY   
Sbjct: 61  DSDLCIDARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGSD 120

Query: 234 QFGA 237
               
Sbjct: 121 YANE 124

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|197795 smart00570, AWS, associated with SET domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 352
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 100.0
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 100.0
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.96
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.94
KOG11411262 consensus Predicted histone methyl transferase [Ch 99.92
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.92
KOG1085392 consensus Predicted methyltransferase (contains a 99.8
COG2940480 Proteins containing SET domain [General function p 99.75
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.66
KOG1081463 consensus Transcription factor NSD1 and related SE 99.48
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 99.47
KOG2589453 consensus Histone tail methylase [Chromatin struct 99.22
smart0057051 AWS associated with SET domains. subdomain of PRES 99.17
KOG1081463 consensus Transcription factor NSD1 and related SE 98.69
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 98.48
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 98.33
smart0046898 PreSET N-terminal to some SET domains. A Cys-rich 97.74
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 97.48
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 97.37
PF09038122 53-BP1_Tudor: Tumour suppressor p53-binding protei 97.21
smart0074361 Agenet Tudor-like domain present in plant sequence 97.17
smart0050826 PostSET Cysteine-rich motif following a subset of 96.53
KOG11411262 consensus Predicted histone methyl transferase [Ch 95.82
KOG2084 482 consensus Predicted histone tail methylase contain 92.51
PF06003 264 SMN: Survival motor neuron protein (SMN); InterPro 91.1
KOG4675273 consensus Uncharacterized conserved protein, conta 87.95
KOG1337472 consensus N-methyltransferase [General function pr 85.52
PF15057124 DUF4537: Domain of unknown function (DUF4537) 83.3
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 80.22
PF00567121 TUDOR: Tudor domain; InterPro: IPR008191 There are 80.21
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-56  Score=450.47  Aligned_cols=222  Identities=41%  Similarity=0.808  Sum_probs=205.5

Q ss_pred             CCCCCCCcEEecceeeccccccccCCCCCCcccccCCCCC----CCCCCCCCCccceeeeCCC-CCC-CCCCCCCccccc
Q 018661           37 IKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGS----SGVCDRDCHCGMLLSSCSS-GCK-CGNSCLNKPFQN  110 (352)
Q Consensus        37 ~~~~p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~~----~~~C~~~C~c~~~~~eC~~-~C~-C~~~C~Nr~~q~  110 (352)
                      ....|..|.-|..++|..++.+.....+.+.|+|.+..++    .+.|+.+|.|+++..||++ .|+ ||..|+|++||+
T Consensus        37 k~e~~~~f~~~~e~~y~~krk~~~ee~~~m~Cdc~~~~~d~~n~~~~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQk  116 (729)
T KOG4442|consen   37 KEEALTKFENLDEKFYANKRKKKKEENDEMICDCKPKTGDGANGACACGEDCINRMTSIECSDRECPRCGVYCKNQRFQK  116 (729)
T ss_pred             hcccchhhhhhhhhhhHHhhccCcccCcceeeecccccccccccccccCccccchhhhcccCCccCCCccccccchhhhh
Confidence            3455788888999999877655444446789999996644    4568999999999999999 899 999999999999


Q ss_pred             CCcccEEEEEecCCCcEEEeccccCCCceEEEEeeeEechhhHHHHHHHhhhcCCcceEEeeeccceeEeecccCCcccc
Q 018661          111 RPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRY  190 (352)
Q Consensus       111 ~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gevi~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~GN~aRf  190 (352)
                      .+..+++||.|+++||||+|.++|++|+||+||.||||+..+++.|...|...+..|+|+|.+..+.+|||+.+||+|||
T Consensus       117 kqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~e~IDAT~KGnlaRF  196 (729)
T KOG4442|consen  117 KQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGGEYIDATKKGNLARF  196 (729)
T ss_pred             hccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCCceecccccCcHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcceEEEEECCeEEEEEEEccCCCCCCeEEEcCCCCCCCCC-ceecCCCCCCccccCcCCCC
Q 018661          191 INHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGAD-QDCHCGAAGCRRKLGAKPSK  258 (352)
Q Consensus       191 iNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELT~dY~~~~~~~~-~~C~Cgs~~Crg~l~~~~~~  258 (352)
                      |||||+|||.+++|.|++..||+|||.|.|++||||||||+++.|+.. ++|.||+++||||||++|..
T Consensus       197 iNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGgk~q~  265 (729)
T KOG4442|consen  197 INHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGGKPQT  265 (729)
T ss_pred             hcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCCCCcc
Confidence            999999999999999999999999999999999999999999999864 89999999999999999643

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>smart00468 PreSET N-terminal to some SET domains Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 6e-33
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 2e-30
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 7e-27
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 4e-19
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 8e-15
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 9e-15
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 1e-14
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 2e-14
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 4e-14
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 5e-14
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 9e-14
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 3e-12
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 9e-12
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 1e-11
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 1e-11
3f9z_A166 Structural Insights Into Lysine Multiple Methylatio 3e-11
3f9w_A166 Structural Insights Into Lysine Multiple Methylatio 3e-11
4ij8_A165 Crystal Structure Of The Complex Of Setd8 With Sam 1e-10
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 1e-08
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure 
Iteration: 1

 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 8/220 (3%)
Query: 44  YVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSG-------VCDRDCHXXXXXXXXXXX 96
           +  I+ N+YLT+R K +   D     C  +P S          C  DC            
Sbjct: 40  FDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSR 99
Query: 97  XXXXXXXXNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEER 156
                   N+ FQ +    ++++ TEK G G+ A +D+    FV+EY GEV+D +  + R
Sbjct: 100 CPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKAR 159
Query: 157 LWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFA 216
           + +       ++Y   +  D +IDAT KGN SR++NHSC PN E QKW ++G+ R+G F 
Sbjct: 160 VKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFT 219
Query: 217 TRDIKKGENLTYDYQFVQFGAD-QDCHCGAAGCRRKLGAK 255
           T+ +  G  LT+DYQF ++G + Q C CG+A CR  LG +
Sbjct: 220 TKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGE 259
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 1e-91
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 7e-88
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 1e-84
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 2e-71
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 7e-67
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 2e-66
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 2e-63
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 8e-63
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 2e-62
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 6e-61
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 8e-39
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 1e-32
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 2e-32
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 2e-30
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 2e-18
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 2e-14
3dal_A196 PR domain zinc finger protein 1; methyltransferase 2e-14
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 5e-14
3db5_A151 PR domain zinc finger protein 4; methyltransferase 9e-14
3ray_A237 PR domain-containing protein 11; structural genomi 9e-08
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 3e-05
3qww_A433 SET and MYND domain-containing protein 2; methyltr 6e-05
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 1e-04
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 100.0
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.96
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.95
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.95
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.94
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.94
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.91
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.82
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.8
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.75
3ray_A237 PR domain-containing protein 11; structural genomi 99.66
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.56
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 99.22
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.87
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.78
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 97.78
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 97.7
3qii_A85 PHD finger protein 20; tudor domain, structural ge 97.63
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 97.56
2g3r_A123 Tumor suppressor P53-binding protein 1; tandem tud 97.45
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 97.34
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 97.19
3s6w_A54 Tudor domain-containing protein 3; methylated argi 97.16
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 97.11
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 97.08
1ssf_A156 Transformation related protein 53 binding protein 97.06
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 96.92
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 96.89
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 96.62
2d9t_A78 Tudor domain-containing protein 3; structural geno 96.59
2eqj_A66 Metal-response element-binding transcription facto 96.52
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 95.51
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 96.27
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 96.21
2m0o_A79 PHD finger protein 1; tudor domain, H3K36ME3 bindi 94.27
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 93.61
2e5p_A68 Protein PHF1, PHD finger protein 1; tudor domain, 93.58
2eqk_A85 Tudor domain-containing protein 4; structural geno 93.49
2e5q_A63 PHD finger protein 19; tudor domain, isoform B, st 93.08
2xk0_A69 Polycomb protein PCL; transcription, aromatic CAGE 92.22
2diq_A110 Tudor and KH domain-containing protein; tudor doma 91.38
2wac_A 218 CG7008-PA; unknown function, tudor, beta-barrel, n 89.65
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 88.69
2xdp_A123 Lysine-specific demethylase 4C; oxidoreductase, hi 85.44
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 85.32
2qqr_A118 JMJC domain-containing histone demethylation prote 84.72
4b9x_A 226 TDRD1, tudor domain-containing protein 1; replicat 82.92
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 82.37
2hqx_A 246 P100 CO-activator tudor domain; human P100 tudor d 81.68
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A* Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 352
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 2e-37
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 8e-37
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 1e-36
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 2e-18
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  133 bits (335), Expect = 2e-37
 Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 30/224 (13%)

Query: 38  KPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHC----------- 86
              ++ + FI +    T+ +     +    C+C++  G        C C           
Sbjct: 39  PCPSLDFQFISQYRL-TQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDEPTHFA 97

Query: 87  -----------GMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIK 135
                      G ++  C+S C C   C N+  Q      +++ +T++ G G+ +     
Sbjct: 98  YDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAP 157

Query: 136 RGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRD---MVIDATYKGNKSRYIN 192
            G F+  Y+GEVI      +R       G T  +  ++  D     +DA   G+ SR+ N
Sbjct: 158 AGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFN 217

Query: 193 HSCCPNTEMQKWIIDGET----RIGIFATRDIKKGENLTYDYQF 232
           HSC PN  +   + +        +  FA +DI+  E LT+DY  
Sbjct: 218 HSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAG 261
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.94
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.92
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.4
d2diga155 Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 97.49
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 97.29
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 96.63
d2g3ra153 p53-binding protein 1, 53BP1 {Human (Homo sapiens) 95.93
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 92.28
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 89.5
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 88.82
d2qqra256 Jumonji domain-containing protein 2A {Human (Homo 80.9
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.4e-46  Score=350.45  Aligned_cols=219  Identities=26%  Similarity=0.422  Sum_probs=170.3

Q ss_pred             hHHHHHHHHHHhhCCCeEEeCCCCCCCCC-C-CCcEEecceeeccccccccCCCCCCcccccCCCCCCCCCCCCCCc---
Q 018661           12 RIGHAFNKLLKQIGNPVEFELPDWFIKPK-A-IPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHC---   86 (352)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~f~lp~~~~~~~-p-~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C~~~C~c---   86 (352)
                      ..++++.+.++.+ +..+++|-+.++... | ..|+||+++++.... .........+|+|...++-...|...|.|   
T Consensus        12 ~~~~~~~~~~~~~-~~~pi~~~N~vD~~~~P~~~F~yi~~~~~~~~~-~~~~~~~~~gC~C~~~~~C~~~~~~~C~C~~~   89 (269)
T d1mvha_          12 EKRELFRKKLREI-EGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGV-IPPDPNFQSGCNCSSLGGCDLNNPSRCECLDD   89 (269)
T ss_dssp             HHHHHHHHHHHTS-SSSCEEEECSSCCCCCSCCCSEECSSCEECTTC-CCCCGGGCCCCCCCCSSSSCTTCTTTCSSSTT
T ss_pred             HHHHHHHHHHhhC-CCCCcEEEeCCCCCCCCCCCcEEeeccccCCCC-CcCCccccCCCCCCCCCCcCCCCCcceecccc
Confidence            4456666667766 455666667766543 3 369999999987553 22222335678887632211111122332   


Q ss_pred             -------------------cceeeeCCCCCCCCCCCCCcccccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeeE
Q 018661           87 -------------------GMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEV  147 (352)
Q Consensus        87 -------------------~~~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~v~~s~~kG~GlfA~~~I~~G~~I~ey~Gev  147 (352)
                                         ..+++||++.|+|+..|.||++|++...+++|++|+.+||||||+++|++|+||+||.||+
T Consensus        90 ~~~~~~~~~~~~~rl~~~~~~~i~EC~~~C~C~~~C~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gev  169 (269)
T d1mvha_          90 LDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEV  169 (269)
T ss_dssp             CCSSCCCSBCTTSSBCTTCCSEEECCCTTSCSCTTCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEE
T ss_pred             cCCCCccccccCCccccCcCCeEEECCCCCCCCCCCCCeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceE
Confidence                               1247999999999999999999999999999999999999999999999999999999999


Q ss_pred             echhhHHHHHHHhhhcCCcceEEeee-----ccceeEeecccCCccccccCCCCCCcceEEEEECC----eEEEEEEEcc
Q 018661          148 IDDQTCEERLWKMKHLGETNFYLCEI-----NRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDG----ETRIGIFATR  218 (352)
Q Consensus       148 i~~~e~~~r~~~~~~~~~~~~y~~~l-----~~~~~IDa~~~GN~aRfiNHSC~PN~~~~~~~~~g----~~~i~i~A~r  218 (352)
                      ++..++++|...+......  |++.+     ...++|||+..||++|||||||+||+.++.|++++    .++|+|||+|
T Consensus       170 i~~~e~~~R~~~y~~~~~~--~~~~l~~~~~~~~~~iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~r  247 (269)
T d1mvha_         170 ITSAEAAKRDKNYDDDGIT--YLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIK  247 (269)
T ss_dssp             EEHHHHHHHHTTCCSCSCC--CEEEECSSCSSSCEEEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESS
T ss_pred             EcHHHHHHHHHhHhhcCCc--chhheecccccccceeeeeecCcceEEeecCCCCCcEEEEEEecCCcCccceEEEEECC
Confidence            9999999987766554443  44443     35689999999999999999999999999998765    4789999999


Q ss_pred             CCCCCCeEEEcCCCCC
Q 018661          219 DIKKGENLTYDYQFVQ  234 (352)
Q Consensus       219 dI~~GEELT~dY~~~~  234 (352)
                      ||++||||||||++..
T Consensus       248 dI~~GEELt~DYG~~~  263 (269)
T d1mvha_         248 DIQPLEELTFDYAGAK  263 (269)
T ss_dssp             CBCTTCBCEECCCTTS
T ss_pred             ccCCCCEEEEecCCCc
Confidence            9999999999999754
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure