Citrus Sinensis ID: 018757

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMHASQEKSQSQDNTSQPSLNGSSAFQHSAGSPSLEDFGAATTFSLKEPS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccEEcccccccccEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEHHcccccccccccHHHHHccccccccccccHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHEEEEEEccccHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHccccHcEEEEccccHccHHHHHHHHHcccccEEEEccccccEEEEEEEHHHEEccccccccHHHccccccccccccccHHHHHHHHHccccEEEEEEEccccccccccHHHHHccEEcccccccccccccccccccHcccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHEHHHEccHHHHHHHHHHHHcccccccccHHEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNfhgneagkggdlthDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTmghsrvpvysgnptnIIGLILVKNllsvdyrdavpLRKMIIRriprvsedmplyDILNEFQKGHSHIAVVYKdlnekkegelfkdnckkprgqpekssqkvdngvTAAGQNLRNkleskdaqqtkkvppatptfnkrhrgcsycildfengpfpdfpsndeavgvITMEDVIEELLQEEILDETDEYVNIHNRIKVNmhasqeksqsqdntsqpslngssafqhsagspsledfgaattfslkeps
Flexible Loop (DISEMBL)
MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGneagkggdlthDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIrriprvsedmpLYDILNEFQKGHSHIAVVYKDLNEKKEGelfkdnckkprgqpekssqkvdngvtAAGQNLrnkleskdaqqtkkvppatptfnkrhrGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMHASQEKSQSQDNTSQPSLNGSSAFQHSAGSPSLEDFGAATTFSLKEPS
Low Complexity Region (SEG)
MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSldldatltldtlNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMedvieellqeeildetdeYVNIHNRIKVNMHASQEKSQSQDNTSQPSLNGSSAFQHSAGSPSLEDFGAATTFSLKEPS
Disordered region (IsUnstruct)
***IVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL**************************************************************RHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKV**************************************************
Disordered Region (DISOPRED)
MAPIVRVLLCLFFPISYPISKILDLML*****************************L*HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESK************P*******************************GVITMEDVIEELLQEEILDETDEYVN*********************************************************
Disordered Region (DISEMBL)
MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCK**************NGVTAAGQNLRN**************PATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNM******************************PSLEDFGAAT********
Disordered Region (DISPRO)
MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPE**************************************FNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMH***********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMHASQEKSQSQDNTSQPSLNGSSAFQHSAGSPSLEDFGAATTFSLKEPS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q8RY60	527	DUF21 domain-containing p	yes	no	0.917	0.611	0.665	1e-128
Q8VZI2	424	DUF21 domain-containing p	no	no	0.786	0.650	0.509	3e-76
Q9ZQR4	423	DUF21 domain-containing p	no	no	0.794	0.659	0.503	1e-74
Q9LTD8	500	DUF21 domain-containing p	no	no	0.846	0.594	0.435	1e-68
Q67XQ0	494	DUF21 domain-containing p	no	no	0.760	0.540	0.463	1e-66
Q4V3C7	495	DUF21 domain-containing p	no	no	0.823	0.583	0.462	2e-65
Q9ZVS8	499	Putative DUF21 domain-con	no	no	0.766	0.539	0.433	7e-62
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.501	0.249	0.374	1e-29
Q9USJ3	679	Uncharacterized protein C	yes	no	0.490	0.253	0.367	5e-26
Q3TWN3	875	Metal transporter CNNM2 O	yes	no	0.518	0.208	0.357	4e-25

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  456 bits (1174), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/347 (66%), Positives = 266/347 (76%), Gaps = 25/347 (7%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAGKGGDLT D
Sbjct: 131 MAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAGKGGDLTTD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ET+II GALELTEKTAKDAMTPIS AFSL+LD  L L+TLN IM++GHSRVPVY  NPT+
Sbjct: 191 ETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRVPVYFRNPTH 250

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHIAVVYKDL+
Sbjct: 251 IIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHIAVVYKDLD 310

Query: 181 EKKEG------------------ELFKDNCKKPRGQPEKSSQ---KVDNGVTAAGQNLRN 219
           E+++                   ELFKD+C+KP+ Q E S +   K++ G   +G++   
Sbjct: 311 EQEQSPETSENGIERRKNKKTKDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENG 370

Query: 220 KLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEE 279
           + +    + +    PA     KRHRGCS+CILD EN P PDFP+N+E VGVITMEDVIEE
Sbjct: 371 EEQQGSGKTSLLAAPA----KKRHRGCSFCILDIENTPIPDFPTNEEVVGVITMEDVIEE 426

Query: 280 LLQEEILDETDEYVNIHNRIKVNMHASQEKSQSQDNTSQPSLNGSSA 326
           LLQEEILDETDEYVNIHNRI+VNMHAS E   S   +   S +GS++
Sbjct: 427 LLQEEILDETDEYVNIHNRIRVNMHASPENLPSVITSITQSSSGSTS 473

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 156/306 (50%), Positives = 194/306 (63%), Gaps = 30/306 (9%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           +AP VRVL+ +  P+++PISK+LD +LG   A L RRAELKT V+FHGNEAGKGG+LTHD
Sbjct: 131 VAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGELTHD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ETTIIAGALEL+EK  KDAMTPIS  F +D++A L  D +N I+  GHSRVPVY   PTN
Sbjct: 191 ETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQPTN 250

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGL+LVKNLL+++  + +P++ + IRRIPRV E +PLYDILNEFQKG SH+AVV +   
Sbjct: 251 IIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVVR--- 307

Query: 181 EKKEGELFKDNCKKPRGQPEKSSQ------KVDNGVTAAGQN--LRNKLESKDAQQTKKV 232
                      C K    P K+         VD+  T   Q   LR K   +  Q+ K  
Sbjct: 308 ----------QCDKIHPLPSKNGSVKEARVDVDSEGTPTPQERMLRTK---RSLQKWKSF 354

Query: 233 PPATPTFNKRHRGCSYC------ILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEIL 286
           P    +F    +   +       IL     P P     +EAVG+ITMEDVIEELLQEEI 
Sbjct: 355 PNRASSFKGGSKSKKWSKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQEEIF 414

Query: 287 DETDEY 292
           DETD +
Sbjct: 415 DETDHH 420

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  280 bits (715), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/302 (50%), Positives = 192/302 (63%), Gaps = 23/302 (7%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           +AP VRVL+ +  P+++PISK+LD +LG G   L RRAELKT V+ HGNEAGKGG+LTHD
Sbjct: 131 VAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ETTIIAGALEL+EK AKDAMTPIS  F +D++A L  D +N I+  GHSRVPVY    TN
Sbjct: 191 ETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTN 250

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGL+LVKNLL+++  + + ++ + IRRIPRV E +PLYDILNEFQKGHSH+AVV +   
Sbjct: 251 IIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVR--- 307

Query: 181 EKKEGELFKDNCKKPRG-QPEKSSQKVDNGVTAAGQNLRNKLESK-----DAQQTKKVPP 234
                      C K    Q   ++ +  N V       R+  E+K       Q+ K  P 
Sbjct: 308 ----------QCDKIHPLQSNDAANETVNEVRVDVDYERSPQETKLKRRRSLQKWKSFPN 357

Query: 235 ATPTFNKRHRGCS----YCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETD 290
              +   R +  S      IL     P P     ++AVG+ITMEDVIEELLQEEI DETD
Sbjct: 358 RANSLGSRSKRWSKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIEELLQEEIFDETD 417

Query: 291 EY 292
            +
Sbjct: 418 HH 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 146/335 (43%), Positives = 201/335 (60%), Gaps = 38/335 (11%)

Query: 4   IVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETT 63
           +VR+++ +FFP+SYPISK+LDL+LGK H+ LL RAELK+ V  HGNEAGKGG+LTHDETT
Sbjct: 135 LVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEAGKGGELTHDETT 194

Query: 64  IIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIG 123
           II+GAL++++K+AKDAMTP+S+ FSLD++  L   T+  I + GHSR+P+YS NP  IIG
Sbjct: 195 IISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRIPIYSVNPNVIIG 254

Query: 124 LILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKK 183
            ILVKNL+ V   D   +R + IRR+P+V  ++PLYDILN FQ G SH+A V    N   
Sbjct: 255 FILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRSHMAAVVGTKNHTN 314

Query: 184 EGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRH 243
                 +  K   G P                       +KDA     +P    +     
Sbjct: 315 TNTPVHE--KSINGSP-----------------------NKDANVFLSIPALNSSETSHQ 349

Query: 244 RGCSYC--ILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKV 301
               Y   I D           ++E +G+IT+EDV+EEL+QEEI DETD+YV +H RI +
Sbjct: 350 SPIRYIDSISD----------EDEEVIGIITLEDVMEELIQEEIYDETDQYVELHKRITI 399

Query: 302 NMHASQEKSQSQDNTSQPSLNGSSAFQHSAGSPSL 336
           NM  S    ++    S+ + +  S ++ S  SPS+
Sbjct: 400 NMPMSGNSPETATWASELA-SPISPYRSSLLSPSI 433

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  254 bits (648), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 145/313 (46%), Positives = 190/313 (60%), Gaps = 46/313 (14%)

Query: 4   IVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETT 63
           +VR+L+ L +PI++PI KILDL+LG   A L RRA+LK  V+ H  EAGKGG+LTHDETT
Sbjct: 157 LVRILMTLCYPIAFPIGKILDLVLGHNDA-LFRRAQLKALVSIHSQEAGKGGELTHDETT 215

Query: 64  IIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIG 123
           II+GAL+LTEKTA++AMTPI   FSLD+++ L  + +  I+  GHSRVPVYSGNP N+IG
Sbjct: 216 IISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIG 275

Query: 124 LILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA---------- 173
           L+LVK+LL+V       +  + IRRIPRV  DMPLYDILNEFQKG SH+A          
Sbjct: 276 LLLVKSLLTVRPETETLVSAVCIRRIPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSK 335

Query: 174 -----VVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQ 228
                ++ +  +E  + +L      K  G  +     +D    A GQ+     ES     
Sbjct: 336 VPPSTLLEEHTDESNDSDLTAPLLLKREGNHDNVIVTIDK---ANGQSFFQNNESGP--- 389

Query: 229 TKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDE 288
                           G S+     E+G         E +G+IT+EDV EELLQEEI+DE
Sbjct: 390 ---------------HGFSHTSEAIEDG---------EVIGIITLEDVFEELLQEEIVDE 425

Query: 289 TDEYVNIHNRIKV 301
           TDEYV++H RI+V
Sbjct: 426 TDEYVDVHKRIRV 438

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  249 bits (637), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/309 (46%), Positives = 197/309 (63%), Gaps = 20/309 (6%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           +  +VR+L+ L +PIS+PI+K+LD +LG     L RRA+LK  V+ HG  AGKGG+LTHD
Sbjct: 153 LVWLVRILMVLSYPISFPIAKMLDWVLGHNDP-LFRRAQLKALVSIHGEAAGKGGELTHD 211

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ETTII+GAL+LTEKTA++AMTPI   FSLD+++ L  + ++ I   GHSRVPVYS NP N
Sbjct: 212 ETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGHSRVPVYSDNPKN 271

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           +IGL+LVK+LL+V       +  + IRRIPRV  +MPLYDILNEFQKG SH+A V K + 
Sbjct: 272 VIGLLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKGSSHMAAVVK-VK 330

Query: 181 EKKEGE---LFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATP 237
            K +G    L ++N     G+   SS   ++ +TA     R         +  K    + 
Sbjct: 331 GKSKGHPSTLHEENS----GESNVSSN--NSELTAPLLLKREGNHDSVIVRIDKANGQSF 384

Query: 238 TFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHN 297
                 +G S+   + E+G         + +G+IT+EDV EELLQEEI+DETDEY+++H 
Sbjct: 385 ISEAGRQGFSHTSEEIEDG---------DVIGIITLEDVFEELLQEEIVDETDEYIDVHK 435

Query: 298 RIKVNMHAS 306
           RI+V   A+
Sbjct: 436 RIRVATVAA 444

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  238 bits (606), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 134/309 (43%), Positives = 190/309 (61%), Gaps = 40/309 (12%)

Query: 4   IVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETT 63
           +VR+L+ + +PI+YPI K+LD ++G     L RRA+LK  V+ H  EAGKGG+LTH+ET 
Sbjct: 155 LVRILMIICYPIAYPIGKVLDAVIGHNDT-LFRRAQLKALVSIHSQEAGKGGELTHEETM 213

Query: 64  IIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIG 123
           II+GAL+L++KTA++AMTPI   FSLD++  L  +T+  I++ GHSR+PVY GNP NIIG
Sbjct: 214 IISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIPVYLGNPKNIIG 273

Query: 124 LILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAV--------V 175
           L+LVK+LL+V      P+  + IR+IPRV  DMPLYDILNEFQKG SH+A          
Sbjct: 274 LLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKDKDK 333

Query: 176 YKDLNEKKEGELFKDNCK--------KPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQ 227
             ++     GE  K+N K         P  + E     VD  +    ++++N+   ++ Q
Sbjct: 334 KNNMQLLSNGETPKENMKFYQSSNLTAPLLKHESHDVVVD--IDKVPKHVKNR--GRNFQ 389

Query: 228 QTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILD 287
           Q   V    P           C+L+ +N        + E +G+IT+EDV EELLQ EI+D
Sbjct: 390 QNGTVTRDLP-----------CLLE-DN-------EDAEVIGIITLEDVFEELLQAEIVD 430

Query: 288 ETDEYVNIH 296
           ETD Y+++H
Sbjct: 431 ETDVYIDVH 439

Arabidopsis thaliana (taxid: 3702)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 3/179 (1%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
             P V VL+ L +P++YPI+ +LD MLG+ H  + +++ LKT V  H     +   LT D
Sbjct: 182 FCPFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKD 239

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PT 119
           E TII+  L+L  K  ++ MTPI   F++  D  L   T+  I   G SR+P++  N P 
Sbjct: 240 EVTIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPN 299

Query: 120 NIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178
           N IG++LV+ L+S D  D +P+    +  +P  S +    +ILN FQ+G +H+ VV K+
Sbjct: 300 NFIGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKE 358

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 5/177 (2%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGD-LTH 59
           + PIV  ++ L +PI+YP + ILD  LG+  + + +++ LKT V  H +    G D L  
Sbjct: 183 LEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLHRD---LGIDKLNQ 239

Query: 60  DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYS-GNP 118
           DE TII   L+L EK A+  MTPI   F+L +D  L  D +  I+  G+SR+PV+  G P
Sbjct: 240 DEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFP 299

Query: 119 TNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 175
            + IG++L K L+  D  D  P+ K  +  +P+   +    D+LN  Q+G SH+ ++
Sbjct: 300 HDFIGMLLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDLLNYCQEGKSHMILI 356

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q3TWN3|CNNM2_MOUSE Metal transporter CNNM2 OS=Mus musculus GN=Cnnm2 PE=1 SV=3

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 8/190 (4%)

Query: 4   IVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETT 63
           + +  + + FP SYP+SK+LD +LG+    +  R +L   +           DL  +E  
Sbjct: 378 LTKFFMMMTFPASYPVSKLLDCVLGQEIGTVYNREKLLEMLRV----TDPYNDLVKEELN 433

Query: 64  IIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIG 123
           II GALEL  KT +D MTP+   F +  +A L  +T++ IM  G++R+PV+ G  +NI+ 
Sbjct: 434 IIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVD 493

Query: 124 LILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           L+ VK+L  VD  D  PL+   K     +  V  D  L  +L EF+KG SH+A+V + +N
Sbjct: 494 LLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQR-VN 552

Query: 181 EKKEGELFKD 190
            + EG+ F +
Sbjct: 553 NEGEGDPFYE 562

Divalent metal cation transporter. Mediates transport of divalent metal cations in an order of Mg(2+) > Co(2+) > Mn(2+) > Sr(2+) > Ba(2+) > Cu(2+) > Fe(2+).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
224129624	513	predicted protein [Populus trichocarpa]	0.886	0.606	0.750	1e-135
302142492	524	unnamed protein product [Vitis vinifera]	0.980	0.656	0.677	1e-134
225458287	526	PREDICTED: DUF21 domain-containing prote	0.988	0.659	0.671	1e-133
356518903	487	PREDICTED: DUF21 domain-containing prote	0.960	0.691	0.690	1e-130
356510213	487	PREDICTED: DUF21 domain-containing prote	0.943	0.679	0.678	1e-130
147771522	1762	hypothetical protein VITISV_038533 [Viti	0.917	0.182	0.674	1e-129
449460096	449	PREDICTED: DUF21 domain-containing prote	0.880	0.688	0.725	1e-129
297846940	525	hypothetical protein ARALYDRAFT_473883 [	0.911	0.609	0.682	1e-128
312283071	517	unnamed protein product [Thellungiella h	0.917	0.622	0.688	1e-128
449476799	449	PREDICTED: LOW QUALITY PROTEIN: DUF21 do	0.880	0.688	0.722	1e-128

>gi|224129624|ref|XP_002320632.1| predicted protein [Populus trichocarpa] gi|222861405|gb|EEE98947.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 247/329 (75%), Positives = 273/329 (82%), Gaps = 18/329 (5%)

Query: 12  FFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALEL 71
           FFPISYPISK+LD MLGKGHAVLLRRAELKTFVNFHGNEAG+GGDLTHDETTII GALEL
Sbjct: 142 FFPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAGRGGDLTHDETTIITGALEL 201

Query: 72  TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL 131
           TEKTAKDAMTPISKAFSLDLDATL L+TLNAIMTMGHSRVPVY+G PTNIIGL LVKNLL
Sbjct: 202 TEKTAKDAMTPISKAFSLDLDATLNLETLNAIMTMGHSRVPVYAGKPTNIIGLFLVKNLL 261

Query: 132 SVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEG--ELFK 189
           +VD  DAVPL+KMIIR+IPRVSED+PLYDILNEFQKGHSHIAVVYKDLN  KE     FK
Sbjct: 262 AVDPEDAVPLKKMIIRKIPRVSEDLPLYDILNEFQKGHSHIAVVYKDLNANKETPKNEFK 321

Query: 190 DNCKKPRGQPEKSSQKVDN--GVTAAGQNLRNKLESKD----------AQQTKKVPPAT- 236
           D+C+K RG+ E S +K D+  G T+A  N +  L+S D           QQ KK PP+T 
Sbjct: 322 DSCRK-RGKTETSHEKGDSEVGSTSAIPNKKAALDSDDNQTAATKNDGGQQIKKSPPSTP 380

Query: 237 PTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIH 296
           P F KRH+GCS+CILD E  P P+FPSN+E VGVITMEDVIEELLQEEILDETDEYVNIH
Sbjct: 381 PAFKKRHKGCSFCILDVEKAPIPEFPSNEEVVGVITMEDVIEELLQEEILDETDEYVNIH 440

Query: 297 NRIKVNMHASQEKSQSQDNTSQPSLNGSS 325
           NRIK+NMHASQ+K  +  +TS PS N +S
Sbjct: 441 NRIKINMHASQDK--APQSTSLPSANDAS 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142492|emb|CBI19695.3| unnamed protein product [Vitis vinifera]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/372 (67%), Positives = 277/372 (74%), Gaps = 28/372 (7%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           MAP VRVLL LF+PI+YPISK+LD MLGKGHA LLRRAELKTFV+FHGNEAGKGGDLTHD
Sbjct: 131 MAPFVRVLLLLFYPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAGKGGDLTHD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ETTIIAGALELTEKTAKDAMTPISKAFSLDLD TLTL+TLNAIMT+GHSRVPVY+G PTN
Sbjct: 191 ETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLTLETLNAIMTIGHSRVPVYAGKPTN 250

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGLILVKNLL VD  DAVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHIAVV+KDLN
Sbjct: 251 IIGLILVKNLLMVDPDDAVPLRKMVIRKIPRVSENMPLYDILNEFQKGHSHIAVVFKDLN 310

Query: 181 EKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLE---------SKDAQQTKK 231
           E KE +   +  K    Q     ++ + G TA   NL  K E           DA Q +K
Sbjct: 311 ETKEAQ---NKTKDGALQVSMKREQDEVGATAVTHNLGVKQELHDAGTAVAKNDADQQQK 367

Query: 232 VPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDE 291
             P+ P F KRHRGCS+CILD EN P P+FP N+ AVGVITMEDVIEELLQEEILDETDE
Sbjct: 368 KNPSVPVFKKRHRGCSFCILDVENAPLPEFPPNEVAVGVITMEDVIEELLQEEILDETDE 427

Query: 292 YVNIHNRIKVNMHASQEKSQSQDNTSQPSLNGSSA----------------FQHSAGSPS 335
           YVNIHNRIKVNMHAS ++     N  QPS   SS                  Q+S  SP 
Sbjct: 428 YVNIHNRIKVNMHASSQEKDPNSNLPQPSTKVSSIAGMLTPTLPASTGLNPAQNSPTSPC 487

Query: 336 LEDFGAATTFSL 347
           LE  G   T S+
Sbjct: 488 LEPPGPTPTLSI 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458287|ref|XP_002282587.1| PREDICTED: DUF21 domain-containing protein At1g47330-like [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/371 (67%), Positives = 277/371 (74%), Gaps = 24/371 (6%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           MAP VRVLL LF+PI+YPISK+LD MLGKGHA LLRRAELKTFV+FHGNEAGKGGDLTHD
Sbjct: 131 MAPFVRVLLLLFYPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAGKGGDLTHD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ETTIIAGALELTEKTAKDAMTPISKAFSLDLD TLTL+TLNAIMT+GHSRVPVY+G PTN
Sbjct: 191 ETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLTLETLNAIMTIGHSRVPVYAGKPTN 250

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGLILVKNLL VD  DAVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHIAVV+KDLN
Sbjct: 251 IIGLILVKNLLMVDPDDAVPLRKMVIRKIPRVSENMPLYDILNEFQKGHSHIAVVFKDLN 310

Query: 181 EKKEGE------LFKDNCKKPRGQPEKSSQKVDN--GVTAAGQNLRNKLESKDAQQTKKV 232
           E KE +        + + K+   Q E  +  V +  GV     +    +   DA Q +K 
Sbjct: 311 ETKEAQNKTKDGALQVSMKRGEDQDEVGATAVTHNLGVKQELHDAGTAVAKNDADQQQKK 370

Query: 233 PPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEY 292
            P+ P F KRHRGCS+CILD EN P P+FP N+ AVGVITMEDVIEELLQEEILDETDEY
Sbjct: 371 NPSVPVFKKRHRGCSFCILDVENAPLPEFPPNEVAVGVITMEDVIEELLQEEILDETDEY 430

Query: 293 VNIHNRIKVNMHASQEKSQSQDNTSQPSLNGSSA----------------FQHSAGSPSL 336
           VNIHNRIKVNMHAS ++     N  QPS   SS                  Q+S  SP L
Sbjct: 431 VNIHNRIKVNMHASSQEKDPNSNLPQPSTKVSSIAGMLTPTLPASTGLNPAQNSPTSPCL 490

Query: 337 EDFGAATTFSL 347
           E  G   T S+
Sbjct: 491 EPPGPTPTLSI 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518903|ref|XP_003528116.1| PREDICTED: DUF21 domain-containing protein At1g47330-like [Glycine max]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/349 (69%), Positives = 270/349 (77%), Gaps = 12/349 (3%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           +AP+VRVLL +FFP SYPISK+LD MLGKGHA LL+RAELKTFVNFHGNEAGKGGDLTHD
Sbjct: 131 LAPLVRVLLIVFFPFSYPISKVLDWMLGKGHAALLKRAELKTFVNFHGNEAGKGGDLTHD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ETTII GALELTEKTAKDAMTPISKAFSLDLDATL L+TLN+IMT+GHSRVPVY+G  TN
Sbjct: 191 ETTIITGALELTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTIGHSRVPVYAGEKTN 250

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGL+LVKNL  VD + AVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHIAVVY+DLN
Sbjct: 251 IIGLVLVKNLFMVDSKAAVPLRKMLIRKIPRVSENMPLYDILNEFQKGHSHIAVVYRDLN 310

Query: 181 EKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNL--RNKLESKDAQQTKKVPPATPT 238
           +K E    K N  +     +K     +N   A G  L   + L +  AQQ KK PPATP 
Sbjct: 311 DKNEAP-KKVNDGEQLDLKDKHKNNGENASLAKGVKLESHDSLITDGAQQAKKSPPATPA 369

Query: 239 FNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYVNIHNR 298
           F KRHRGCSYCILD +N P P FP N+  VGVITMEDVIEELLQEEILDETDEYVNIHN+
Sbjct: 370 FKKRHRGCSYCILDLDNAPLPVFPPNEVVVGVITMEDVIEELLQEEILDETDEYVNIHNK 429

Query: 299 IKVNMHASQEKSQSQDNTSQPS--------LNGSSAFQHSAGSPSLEDF 339
           IKVNM+AS+EK+    N  QPS         N  S    + GSP+  D 
Sbjct: 430 IKVNMNASKEKA-PDTNLLQPSQAVQGHTPTNSISTATSATGSPTTIDL 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510213|ref|XP_003523834.1| PREDICTED: DUF21 domain-containing protein At1g47330 [Glycine max]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/355 (67%), Positives = 274/355 (77%), Gaps = 24/355 (6%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           +AP+VRVLL +FFP+SYPISK+LD MLGKGHA LL+RAELKTFVNFHGNEAGKGGDLTHD
Sbjct: 131 LAPLVRVLLIVFFPLSYPISKVLDWMLGKGHAALLKRAELKTFVNFHGNEAGKGGDLTHD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ETTII GAL+LTEKTAKDAMTPISKAFSLDLDATL L+TLN+IMT+GHSRVPVY+G  TN
Sbjct: 191 ETTIITGALDLTEKTAKDAMTPISKAFSLDLDATLNLETLNSIMTIGHSRVPVYAGEKTN 250

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGL+LVKNL  VD + AVPLRKM+IR+IPRVSE+MPLYDILNEFQKGHSHIAVVY+DLN
Sbjct: 251 IIGLVLVKNLFMVDSKAAVPLRKMLIRKIPRVSENMPLYDILNEFQKGHSHIAVVYRDLN 310

Query: 181 EK-------KEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRN--KLESKDAQQTKK 231
           +K       K+GEL  D   K + + EK+S          G+ L +   L +  AQQ KK
Sbjct: 311 DKNEAPKKVKDGELL-DLKDKRKNKGEKTSLD-------KGEKLESHYSLTTDGAQQAKK 362

Query: 232 VPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDE 291
            PPATP F KRHRGCSYCILD +N P P FP N+  VGVITMEDVIEELLQEEILDETDE
Sbjct: 363 SPPATPAFKKRHRGCSYCILDLDNSPLPVFPPNEVVVGVITMEDVIEELLQEEILDETDE 422

Query: 292 YVNIHNRIKVNMHASQEKS-------QSQDNTSQPSLNGSSAFQHSAGSPSLEDF 339
           YVNIHN+IKVNM+AS+EK+        SQ        N  S    + GSP+  D 
Sbjct: 423 YVNIHNKIKVNMNASKEKAPDANMLLPSQAVQGHTPTNSISTATSATGSPTTIDL 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771522|emb|CAN75692.1| hypothetical protein VITISV_038533 [Vitis vinifera]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/362 (67%), Positives = 266/362 (73%), Gaps = 40/362 (11%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           MAP VRVLL LF+PI+YPISK+LD MLGKGHA LLRRAELKTFV+FHGNEAGKGGDLTHD
Sbjct: 131 MAPFVRVLLLLFYPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAGKGGDLTHD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTL----------------------- 97
           ETTIIAGALELTEKTAKDAMTPISKAFSLDLD TLTL                       
Sbjct: 191 ETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLTLWVYKFLINLSISIMFPCHSYVFI 250

Query: 98  -----DTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV 152
                +TLNAIMT+GHSRVPVY+G PTNIIGLILVKNLL VD  DAVPLRKM+IR+IPRV
Sbjct: 251 LFSLRETLNAIMTIGHSRVPVYAGKPTNIIGLILVKNLLMVDPDDAVPLRKMVIRKIPRV 310

Query: 153 SEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTA 212
           SE+MPLYDILNEFQKGHSHIAVV+KDLNE KE +   +  K    Q     ++ + G TA
Sbjct: 311 SENMPLYDILNEFQKGHSHIAVVFKDLNETKEAQ---NKTKDGALQVSMKREQDEVGATA 367

Query: 213 AGQNLRNKLE---------SKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPS 263
              NL  K E           DA Q +K  PA P F KRHRGCS+CILD EN P P+FP 
Sbjct: 368 VTHNLGVKQELHDAGTAVAKNDADQQQKKNPAVPVFKKRHRGCSFCILDVENAPLPEFPP 427

Query: 264 NDEAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMHASQEKSQSQDNTSQPSLNG 323
           N+ AVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMHAS ++     N  QPS   
Sbjct: 428 NEVAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMHASSQEKDPNSNXPQPSTKV 487

Query: 324 SS 325
           SS
Sbjct: 488 SS 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460096|ref|XP_004147782.1| PREDICTED: DUF21 domain-containing protein At1g47330-like [Cucumis sativus]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/331 (72%), Positives = 261/331 (78%), Gaps = 22/331 (6%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           MAP+VR+LL +FFPISYPISK+LD MLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD
Sbjct: 131 MAPLVRILLIVFFPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ETTIIAGALELTEKTAKDAMT IS AFSLDLDATL L+TLNAIMT GHSRVPVYSG+P N
Sbjct: 191 ETTIIAGALELTEKTAKDAMTSISNAFSLDLDATLDLETLNAIMTKGHSRVPVYSGDPKN 250

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGL+LVKNLL+VD  D V L+KMIIR+IPRVSEDMPLYDILNEFQKGHSHIAVV+    
Sbjct: 251 IIGLVLVKNLLTVDPEDRVSLKKMIIRKIPRVSEDMPLYDILNEFQKGHSHIAVVF---- 306

Query: 181 EKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQ---------QTKK 231
            KK G   +   KK  G        V++G  AA QN+  K+ES DAQ         QTKK
Sbjct: 307 -KKHGHQSETLPKKDIG--------VNSGDAAAAQNIGMKMESVDAQTVAEKAGGLQTKK 357

Query: 232 VPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDE 291
            PPATP F KRHRGCS+CILD EN P P FP  +E VGVITMEDVIEELLQEEILDETDE
Sbjct: 358 SPPATPAFKKRHRGCSFCILDVENAPLPVFPLGEEVVGVITMEDVIEELLQEEILDETDE 417

Query: 292 YVNIHNRIKVNMHASQEKSQSQDNTSQPSLN 322
           YVNIHNRIK+NM  S EK         P++N
Sbjct: 418 YVNIHNRIKINMQPSPEKLSINQPQLSPNVN 448

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846940|ref|XP_002891351.1| hypothetical protein ARALYDRAFT_473883 [Arabidopsis lyrata subsp. lyrata] gi|297337193|gb|EFH67610.1| hypothetical protein ARALYDRAFT_473883 [Arabidopsis lyrata subsp. lyrata]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/347 (68%), Positives = 269/347 (77%), Gaps = 27/347 (7%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAGKGGDLT D
Sbjct: 131 MAPFVRVLLILFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAGKGGDLTTD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ET+II GALELTEKTAKDAMTPIS AFSL+LD TL L+TLN IM++GHSRVPVY  NPT+
Sbjct: 191 ETSIITGALELTEKTAKDAMTPISNAFSLELDTTLNLETLNTIMSVGHSRVPVYFRNPTH 250

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHIAVVYKDL+
Sbjct: 251 IIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHIAVVYKDLD 310

Query: 181 EKKEG------------------ELFKDNCKKPRGQ---PEKSSQKVDNGVTAAGQNLRN 219
           E+++                   ELFKD+C+KP+ Q    EK   K++ G   +G++   
Sbjct: 311 EQEQSPETSESGIERRKNKNTKDELFKDSCRKPKAQFKVSEKEVFKIETGDAKSGKS--- 367

Query: 220 KLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEE 279
             E+ + QQ K    A P   KRHRGCS+CILD EN P PDFP+N+E VGVITMEDVIEE
Sbjct: 368 --ENGEEQQGKTSLLAAPA-KKRHRGCSFCILDIENTPIPDFPTNEEVVGVITMEDVIEE 424

Query: 280 LLQEEILDETDEYVNIHNRIKVNMHASQEKSQSQDNTSQPSLNGSSA 326
           LLQEEILDETDEYVNIHNRI+VNMHASQE   S   +   S +GS++
Sbjct: 425 LLQEEILDETDEYVNIHNRIRVNMHASQENLPSVITSITQSSSGSTS 471

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283071|dbj|BAJ34401.1| unnamed protein product [Thellungiella halophila]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/343 (68%), Positives = 268/343 (78%), Gaps = 21/343 (6%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAGKGGDLT+D
Sbjct: 132 MAPFVRVLLILFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAGKGGDLTND 191

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ET+II GALELTEKTAKDAMTPIS AFSL+LD+TL L+TL+ IM++GHSRVPVY  NPT+
Sbjct: 192 ETSIITGALELTEKTAKDAMTPISNAFSLELDSTLNLETLSTIMSVGHSRVPVYFRNPTH 251

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGLILVKNLL+ D R  V LRKMI+R+IPRVSE MPLYDILNEFQKGHSHIAVVYKDL+
Sbjct: 252 IIGLILVKNLLAFDARKEVSLRKMIMRKIPRVSETMPLYDILNEFQKGHSHIAVVYKDLD 311

Query: 181 EKK------------------EGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLE 222
           E+K                    ELFKD+CKKP+ Q E S ++V    T   ++ ++  E
Sbjct: 312 EQKGSPETSQNGSERRKNKKTRDELFKDSCKKPKSQLEVSEKEVFKIETGDAKSFKS--E 369

Query: 223 SKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQ 282
           + + QQ K +  A P   KRHRGCS+CILD EN P PDFP N+E VGVITMEDVIEELLQ
Sbjct: 370 NSEEQQGKTILSAAPA-KKRHRGCSFCILDIENFPIPDFPPNEEVVGVITMEDVIEELLQ 428

Query: 283 EEILDETDEYVNIHNRIKVNMHASQEKSQSQDNTSQPSLNGSS 325
           EEILDETDEYVNIHNRI+VNMHASQE   S   +   S +GS+
Sbjct: 429 EEILDETDEYVNIHNRIRVNMHASQENLPSVITSITQSSSGST 471

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476799|ref|XP_004154837.1| PREDICTED: LOW QUALITY PROTEIN: DUF21 domain-containing protein At1g47330-like [Cucumis sativus]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/331 (72%), Positives = 260/331 (78%), Gaps = 22/331 (6%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
           MAP+VR+LL +FFPISYPISK+LD MLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD
Sbjct: 131 MAPLVRILLIVFFPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 190

Query: 61  ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN 120
           ETTIIAGALELTEKTAKDAMT IS AFSLDLDATL L+TLNAIMT GHSRVPVYSG+P N
Sbjct: 191 ETTIIAGALELTEKTAKDAMTSISNAFSLDLDATLDLETLNAIMTKGHSRVPVYSGDPKN 250

Query: 121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
           IIGL+LVKNLL+VD  D V L+ MIIR+IPRVSEDMPLYDILNEFQKGHSHIAVV+    
Sbjct: 251 IIGLVLVKNLLTVDPEDRVSLKXMIIRKIPRVSEDMPLYDILNEFQKGHSHIAVVF---- 306

Query: 181 EKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQ---------QTKK 231
            KK G   +   KK  G        V++G  AA QN+  K+ES DAQ         QTKK
Sbjct: 307 -KKHGHQSETLPKKDIG--------VNSGDAAAAQNIGMKMESVDAQTVAEKAGGLQTKK 357

Query: 232 VPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDETDE 291
            PPATP F KRHRGCS+CILD EN P P FP  +E VGVITMEDVIEELLQEEILDETDE
Sbjct: 358 SPPATPAFKKRHRGCSFCILDVENVPLPVFPLGEEVVGVITMEDVIEELLQEEILDETDE 417

Query: 292 YVNIHNRIKVNMHASQEKSQSQDNTSQPSLN 322
           YVNIHNRIK+NM  S EK         P++N
Sbjct: 418 YVNIHNRIKINMQPSPEKLSINQPQLSPNVN 448

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.655	0.436	0.656	3.2e-72
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.749	0.620	0.483	1.4e-57
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.757	0.628	0.469	2.5e-56
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.564	0.396	0.52	3.3e-55
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.797	0.561	0.399	5.8e-50
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.509	0.362	0.583	1.5e-49
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.792	0.561	0.414	4.7e-48
ASPGD|ASPL0000052186	484	AN0789 [Emericella nidulans (t	0.498	0.361	0.355	2.6e-29
SGD|S000005421	706	MAM3 "Protein required for nor	0.495	0.246	0.361	4.8e-28
CGD|CAL0000380	780	orf19.6979 [Candida albicans (	0.507	0.228	0.348	2.1e-27

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 155/236 (65%), Positives = 175/236 (74%)

Query:     1 MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
             MAP VRVLL LFFPISYPISK+LD MLGKGH VLLRRAELKTFVNFHGNEAGKGGDLT D
Sbjct:   131 MAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAGKGGDLTTD 190

Query:    61 ETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTN 120
             ET+II GALELTEKTAKDAMTPIS AFS            N IM++GHSRVPVY  NPT+
Sbjct:   191 ETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRVPVYFRNPTH 250

Query:   121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
             IIGLILVKNLL+VD R  VPLRKM +R+IPRVSE MPLYDILNEFQKGHSHIAVVYKDL+
Sbjct:   251 IIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHIAVVYKDLD 310

Query:   181 EKKEGELFKDNC------KKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTK 230
             E+++     +N       KK + +  K S +         +    K+E+ DA+  K
Sbjct:   311 EQEQSPETSENGIERRKNKKTKDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGK 366

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 136/281 (48%), Positives = 172/281 (61%)

Query:     1 MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
             +AP VRVL+ +  P+++PISK+LD +LG   A L RRAELKT V+FHGNEAGKGG+LTHD
Sbjct:   131 VAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGELTHD 190

Query:    61 ETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTN 120
             ETTIIAGALEL+EK  KDAMTPIS  F             N I+  GHSRVPVY   PTN
Sbjct:   191 ETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQPTN 250

Query:   121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
             IIGL+LVKNLL+++  + +P++ + IRRIPRV E +PLYDILNEFQKG SH+AVV +  +
Sbjct:   251 IIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVVRQCD 310

Query:   181 EKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQN--LRNKLESKDAQQTKKVPPATPT 238
               K   L   N     G  +++   VD+  T   Q   LR K   +  Q+ K  P    +
Sbjct:   311 --KIHPLPSKN-----GSVKEARVDVDSEGTPTPQERMLRTK---RSLQKWKSFPNRASS 360

Query:   239 FNKRHRGCSYC------ILDFENGPFPDFPSNDEAVGVITM 273
             F    +   +       IL     P P     +EAVG+ITM
Sbjct:   361 FKGGSKSKKWSKDNDADILQLNGNPLPKLAEEEEAVGIITM 401

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 130/277 (46%), Positives = 168/277 (60%)

Query:     1 MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHD 60
             +AP VRVL+ +  P+++PISK+LD +LG G   L RRAELKT V+ HGNEAGKGG+LTHD
Sbjct:   131 VAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHD 190

Query:    61 ETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTN 120
             ETTIIAGALEL+EK AKDAMTPIS  F             N I+  GHSRVPVY    TN
Sbjct:   191 ETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTN 250

Query:   121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
             IIGL+LVKNLL+++  + + ++ + IRRIPRV E +PLYDILNEFQKGHSH+AVV +  +
Sbjct:   251 IIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVRQCD 310

Query:   181 EKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFN 240
               K   L  ++          +  +VD     + Q  + K   +  Q+ K  P    +  
Sbjct:   311 --KIHPLQSNDA----ANETVNEVRVDVDYERSPQETKLK-RRRSLQKWKSFPNRANSLG 363

Query:   241 KRHRGCSYC----ILDFENGPFPDFPSNDEAVGVITM 273
              R +  S      IL     P P     ++AVG+ITM
Sbjct:   364 SRSKRWSKDNDADILQLNEHPLPKLDEEEDAVGIITM 400

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 104/200 (52%), Positives = 136/200 (68%)

Query:     4 IVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETT 63
             +VR+++ +FFP+SYPISK+LDL+LGK H+ LL RAELK+ V  HGNEAGKGG+LTHDETT
Sbjct:   135 LVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEAGKGGELTHDETT 194

Query:    64 IIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIG 123
             II+GAL++++K+AKDAMTP+S+ FS              I + GHSR+P+YS NP  IIG
Sbjct:   195 IISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRIPIYSVNPNVIIG 254

Query:   124 LILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKK 183
              ILVKNL+ V   D   +R + IRR+P+V  ++PLYDILN FQ G SH+A V    N   
Sbjct:   255 FILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRSHMAAVVGTKNHTN 314

Query:   184 EGELFKDNCKKPRGQPEKSS 203
                   +  K   G P K +
Sbjct:   315 TNTPVHE--KSINGSPNKDA 332

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 123/308 (39%), Positives = 176/308 (57%)

Query:     4 IVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETT 63
             +VR+L+ + +PI+YPI K+LD ++G     L RRA+LK  V+ H  EAGKGG+LTH+ET 
Sbjct:   155 LVRILMIICYPIAYPIGKVLDAVIGHNDT-LFRRAQLKALVSIHSQEAGKGGELTHEETM 213

Query:    64 IIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIG 123
             II+GAL+L++KTA++AMTPI   FS              I++ GHSR+PVY GNP NIIG
Sbjct:   214 IISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIPVYLGNPKNIIG 273

Query:   124 LILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK--DLNE 181
             L+LVK+LL+V      P+  + IR+IPRV  DMPLYDILNEFQKG SH+A V K  D ++
Sbjct:   274 LLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKDKDK 333

Query:   182 KKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQ-QTKKVPPATPTFN 240
             K   +L  +      G+  K + K           L++  ES D      KVP      +
Sbjct:   334 KNNMQLLSN------GETPKENMKFYQSSNLTAPLLKH--ESHDVVVDIDKVPK-----H 380

Query:   241 KRHRGCSYCILDFENGPFP-DFP----SNDEA--VGVITMXXXXXXXXXXXXXXXXXXYV 293
              ++RG ++     +NG    D P     N++A  +G+IT+                  Y+
Sbjct:   381 VKNRGRNFQ----QNGTVTRDLPCLLEDNEDAEVIGIITLEDVFEELLQAEIVDETDVYI 436

Query:   294 NIHNRIKV 301
             ++H R++V
Sbjct:   437 DVHKRVRV 444

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 105/180 (58%), Positives = 128/180 (71%)

Query:     4 IVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETT 63
             +VR+L+ L +PI++PI KILDL+LG   A L RRA+LK  V+ H  EAGKGG+LTHDETT
Sbjct:   157 LVRILMTLCYPIAFPIGKILDLVLGHNDA-LFRRAQLKALVSIHSQEAGKGGELTHDETT 215

Query:    64 IIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIG 123
             II+GAL+LTEKTA++AMTPI   FS              I+  GHSRVPVYSGNP N+IG
Sbjct:   216 IISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIG 275

Query:   124 LILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKK 183
             L+LVK+LL+V       +  + IRRIPRV  DMPLYDILNEFQKG SH+A V K   + K
Sbjct:   276 LLLVKSLLTVRPETETLVSAVCIRRIPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSK 335

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 126/304 (41%), Positives = 172/304 (56%)

Query:     4 IVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETT 63
             +VR+L+ L +PIS+PI+K+LD +LG     L RRA+LK  V+ HG  AGKGG+LTHDETT
Sbjct:   156 LVRILMVLSYPISFPIAKMLDWVLGHNDP-LFRRAQLKALVSIHGEAAGKGGELTHDETT 214

Query:    64 IIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIG 123
             II+GAL+LTEKTA++AMTPI   FS            + I   GHSRVPVYS NP N+IG
Sbjct:   215 IISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGHSRVPVYSDNPKNVIG 274

Query:   124 LILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKK 183
             L+LVK+LL+V       +  + IRRIPRV  +MPLYDILNEFQKG SH+A V K +  K 
Sbjct:   275 LLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKGSSHMAAVVK-VKGKS 333

Query:   184 EGE---LFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPAT-PTF 239
             +G    L ++N     G+   SS   +  +TA    L  K E        ++  A   +F
Sbjct:   334 KGHPSTLHEENS----GESNVSSNNSE--LTAP---LLLKREGNHDSVIVRIDKANGQSF 384

Query:   240 NKR--HRGCSYCILDFENGPFPDFPSNDEAVGVITMXXXXXXXXXXXXXXXXXXYVNIHN 297
                   +G S+   + E+G         + +G+IT+                  Y+++H 
Sbjct:   385 ISEAGRQGFSHTSEEIEDG---------DVIGIITLEDVFEELLQEEIVDETDEYIDVHK 435

Query:   298 RIKV 301
             RI+V
Sbjct:   436 RIRV 439

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

ASPGD|ASPL0000052186 AN0789 [Emericella nidulans (taxid:162425)]

 Score = 326 (119.8 bits), Expect = 2.6e-29, P = 2.6e-29
 Identities = 63/177 (35%), Positives = 106/177 (59%)

Query:     1 MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGD-LTH 59
             ++P V VL+  F P+++P +++LD +LG+ H  + +++ LKT V  H +   +  + LT 
Sbjct:   164 LSPAVLVLMYAFAPVAWPTARLLDYLLGENHGTVYKKSGLKTLVTLHKSLGSQPAERLTE 223

Query:    60 DETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYS-GNP 118
             DE TII   L+L  K  ++ MTP+   F+              I++ G SR+PV++ GNP
Sbjct:   224 DEVTIITAVLDLKAKPVREIMTPMESVFTMPSNAVLDEKTMELILSAGFSRIPVHAPGNP 283

Query:   119 TNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 175
              + +G++LVK L++ D  DA  +++ ++  +P  S D    DILN FQ+GHSH+A+V
Sbjct:   284 GDFLGMLLVKTLITYDPDDAKRVKEFVLATLPETSPDTSCLDILNYFQEGHSHMALV 340

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

SGD|S000005421 MAM3 "Protein required for normal mitochondrial morphology" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 307 (113.1 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
 Identities = 64/177 (36%), Positives = 98/177 (55%)

Query:     3 PIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDET 62
             P V VL+ L +P++YPI+ +LD MLG+ H  + +++ LKT V  H     +   LT DE 
Sbjct:   184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVER--LTKDEV 241

Query:    63 TIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGN-PTNI 121
             TII+  L+L  K  ++ MTPI   F+              I   G SR+P++  N P N 
Sbjct:   242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query:   122 IGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178
             IG++LV+ L+S D  D +P+    +  +P  S +    +ILN FQ+G +H+ VV K+
Sbjct:   302 IGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKE 358

GO:0005773 "vacuole" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0030026 "cellular manganese ion homeostasis" evidence=IMP

GO:0016020 "membrane" evidence=IEA

CGD|CAL0000380 orf19.6979 [Candida albicans (taxid:5476)]

 Score = 300 (110.7 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
 Identities = 63/181 (34%), Positives = 99/181 (54%)

Query:     2 APIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDE 61
             AP V VL+ + +P++YP + +LD +LG+ H  + +++ LKT V  H     +   L  DE
Sbjct:   199 APFVLVLMYIMYPVAYPCAMLLDHILGEDHGTVYKKSGLKTLVTLHKTMGVER--LNQDE 256

Query:    62 TTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGN-PTN 120
              TII+  L+L EK     MTP+ + ++              I   G SR+P++  N PTN
Sbjct:   257 VTIISAVLDLKEKPVSSIMTPMDRVYTMSADALLDEKTVEEIFNAGFSRIPIHLPNEPTN 316

Query:   121 IIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 180
              IG++LV+ L+S D  DA+P+    +  +P    D    +ILN FQ+G SH+ VV ++  
Sbjct:   317 FIGMLLVRVLISYDPEDALPVASFPLATLPETGLDTSCLNILNYFQEGKSHMIVVSENPG 376

Query:   181 E 181
             E
Sbjct:   377 E 377

GO:0003674 "molecular_function" evidence=ND

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RY60	Y1733_ARATH	No assigned EC number	0.6657	0.9173	0.6110	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	7e-32
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	9e-21
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	6e-18
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	6e-15
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	2e-12
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	3e-08
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	1e-05

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  123 bits (311), Expect = 7e-32
 Identities = 51/177 (28%), Positives = 94/177 (53%), Gaps = 4/177 (2%)

Query: 2   APIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHG--NEAGKGGDLTH 59
           AP +R    L +P+ + +++I + +L       +    L +        +E+ + G L  
Sbjct: 132 APPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELELVSESAEEGVLEE 191

Query: 60  DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT 119
           +E  +I   L+L ++T ++ MTP +   +LDL  T+  + +  I+  GHSR+PVY G+  
Sbjct: 192 EEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYDGDLD 250

Query: 120 NIIGLILVKNLLSVDYRDA-VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 175
           NIIG++ VK+LL            ++++R    V E + L D+L EF++  +H+A+V
Sbjct: 251 NIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIV 307

Length = 429

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 85.6 bits (213), Expect = 9e-21
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 87  FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-AVPLRKMI 145
            +LD D TL  + L  I   GHSR PVY G+  NIIG++ VK+LL            + +
Sbjct: 4   VALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL 62

Query: 146 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 176
           +R    V E  PL D+L E +K  SH+A+V 
Sbjct: 63  LRPPLFVPESTPLDDLLEEMRKERSHMAIVV 93

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 17/186 (9%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDL---MLGKGHAV----LLRRAELKTFVNFHGNEAGK 53
            + I+ +L+ LF P+ + ++ I      +LG         L  + EL+T VN  G+E   
Sbjct: 124 SSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNESGSE--- 180

Query: 54  GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV 113
            G +   +  ++ G L+L   T  D M P ++   +D+D     + +  ++   H+R+P+
Sbjct: 181 -GSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHTRIPL 238

Query: 114 YSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR----VSEDMPLYDILNEFQKGH 169
           Y  +  NIIG++ V++LL +   +     K  I R       V E  PL D L  FQ+  
Sbjct: 239 YRDDLDNIIGVLHVRDLLRLLN-EKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNK 297

Query: 170 SHIAVV 175
            HIA+V
Sbjct: 298 KHIALV 303

Length = 423

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 1   MAPIVRVLLCLFFPISYP---ISKILDLMLGK-GHAVLLRRAELKTFVNFHGNEAGKGGD 56
           MA  + +L  +F PIS P   I+  +    GK    + + +            E     D
Sbjct: 121 MAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNISVDQLS-------QALELTDEED 173

Query: 57  LTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG 116
            T +E  I+ G +       K  M P    F+LD++ T   + +  I+  G+SR+PVY  
Sbjct: 174 TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIE-TSFSEIIPKIIENGYSRIPVYKE 232

Query: 117 NPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 175
              NI G++ +K+LL    +     + + +R    V E+  L D+L +FQ+  +H+A+V
Sbjct: 233 TIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIV 290

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 59  HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP 118
            D   ++ G +++ +   +D M P S+  +L  + TL  + L+ I+   HSR PV S + 
Sbjct: 52  ADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDK 110

Query: 119 TNIIGLILVKNLLSVDYRDAVPLR-KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 175
            ++ G++L K+LL     DA P   K ++R    V E   +  +L EF+   +H+A+V
Sbjct: 111 DHVEGILLAKDLLPFMRSDAEPFDIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIV 168

Length = 293

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 60  DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT 119
           D   ++ G +++ ++  +D M P S+  +L  + TL  + L+ I+   HSR PV S +  
Sbjct: 53  DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKD 111

Query: 120 NIIGLILVKNLLSVDYRDAVPLR-KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 175
           +I G+++ K+LL     DA       ++R+   V E   +  +L EF+    H+A+V
Sbjct: 112 HIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIV 168

Length = 292

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 1   MAPIVRVLLCLFFPISYPISKILDLMLG----KGHAVLLRRAELKTFVNFHGNEAGKGGD 56
           +AP +RVL+ L +P+ + +SK+ +L+L     K     +   EL+  V    +E  + G 
Sbjct: 122 LAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALV----DEGEEEGV 177

Query: 57  LTHDE 61
           +  +E
Sbjct: 178 IEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
PRK11573	413	hypothetical protein; Provisional	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.97
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.96
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.94
KOG2118	498	consensus Predicted membrane protein, contains two	99.8
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.74
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.73
COG2524	294	Predicted transcriptional regulator, contains C-te	99.72
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.7
COG4109	432	Predicted transcriptional regulator containing CBS	99.63
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.59
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.56
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.56
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.54
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.54
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.53
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.53
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.52
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.52
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.52
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.52
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.51
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.51
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.51
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.5
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.49
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.49
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.48
COG3620	187	Predicted transcriptional regulator with C-termina	99.47
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.47
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.47
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.47
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.47
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.47
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.47
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.47
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.47
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.46
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.45
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.45
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.45
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.44
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.44
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.44
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.44
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.44
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.44
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.44
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.44
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.44
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.43
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.43
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.43
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.43
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.43
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.43
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.42
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.42
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.42
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.42
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.42
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.41
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.41
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.41
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.4
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.4
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.4
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.4
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.39
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.39
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.38
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.38
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.37
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.37
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.37
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.37
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.37
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.37
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.36
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.35
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.35
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.34
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.32
COG0517	117	FOG: CBS domain [General function prediction only]	99.32
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.3
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.3
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.29
COG2905	610	Predicted signal-transduction protein containing c	99.23
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.05
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.05
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.82
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.73
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.66
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.64
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.52
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.46
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.32
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.1
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.01
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.97
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.95
COG2524	294	Predicted transcriptional regulator, contains C-te	97.89
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.87
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.83
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.83
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.81
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.81
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.76
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.76
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.74
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.71
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.69
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.69
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.69
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.65
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.64
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.63
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.62
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.6
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.6
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.6
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.6
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.6
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.59
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.58
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.58
COG3620	187	Predicted transcriptional regulator with C-termina	97.57
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.56
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.56
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.56
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.55
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.53
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.52
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.52
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.52
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.51
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.5
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.49
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.49
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.48
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.48
COG0517	117	FOG: CBS domain [General function prediction only]	97.48
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.47
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.47
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.47
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.46
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.46
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.45
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.45
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.45
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.45
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.43
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.43
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.42
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.41
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.41
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.41
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.4
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.39
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.39
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.38
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.37
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.35
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.35
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.33
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.29
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.28
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.28
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.28
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.26
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.26
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.24
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.19
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.15
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.15
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.14
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.1
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.04
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.96
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	96.92
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.9
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	96.9
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.9
PRK01862	574	putative voltage-gated ClC-type chloride channel C	96.85
COG2905	610	Predicted signal-transduction protein containing c	96.84
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	96.77
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.73
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.7
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.68
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	96.59
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	95.62
COG4109	432	Predicted transcriptional regulator containing CBS	95.56
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	94.67
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	94.59
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	93.56
PRK11573	413	hypothetical protein; Provisional	93.5
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	92.85
COG1253	429	TlyC Hemolysins and related proteins containing CB	89.13
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	88.27
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	83.1

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=1.6e-35  Score=297.25  Aligned_cols=171  Identities=27%  Similarity=0.489  Sum_probs=151.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcccccc
Q 018757            1 MAPIVRVLLCLFFPISYPISKILDLM---LGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAK   77 (351)
Q Consensus         1 ~Ap~l~~~~~i~~Plv~pls~ll~~l---lg~~~~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~   77 (351)
                      +|||+++++++|||++|+++++++++   +|.+. ..+|++||+.+++.    +.++| +.++|++||+++|+|++++|+
T Consensus       121 ~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~  194 (408)
T TIGR03520       121 MAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SNISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTK  194 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEee
Confidence            47999999999999999999987765   45443 45899999999984    34456 689999999999999999999


Q ss_pred             cccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCC
Q 018757           78 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMP  157 (351)
Q Consensus        78 dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~  157 (351)
                      |+||||.++++++.+++++ ++++.+.+++|||+|||+++.++++|+|+.||++........++.++ ++++.+|+++++
T Consensus       195 diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~  272 (408)
T TIGR03520       195 QVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKK  272 (408)
T ss_pred             eeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCc
Confidence            9999999999999999999 99999999999999999987789999999999986543333467887 578899999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEecC
Q 018757          158 LYDILNEFQKGHSHIAVVYKDL  179 (351)
Q Consensus       158 L~daL~~m~~~~~~~apVVDe~  179 (351)
                      +.++++.|++++.|+++|+|+|
T Consensus       273 l~~ll~~m~~~~~~~aiVvDE~  294 (408)
T TIGR03520       273 LDDLLRDFQEKKNHLAIVVDEY  294 (408)
T ss_pred             HHHHHHHHHhcCceEEEEEcCC
Confidence            9999999999999999999994

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=289.29  Aligned_cols=171  Identities=19%  Similarity=0.354  Sum_probs=148.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHH---hCCCC----CCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcc
Q 018757            1 MAPIVRVLLCLFFPISYPISKILDLM---LGKGH----AVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTE   73 (351)
Q Consensus         1 ~Ap~l~~~~~i~~Plv~pls~ll~~l---lg~~~----~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d   73 (351)
                      +||++++++++|+|++|+++++.+.+   +|.+.    ...+|++||+.+++.    +.+  .++++|++||+++|+|++
T Consensus       113 ~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~eEl~~lv~~----~~~--~l~~~e~~mi~~vl~l~~  186 (413)
T PRK11573        113 SSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHE----SRS--QISRRNQDMLLSVLDLEK  186 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHHHHHHHHHH----Hhh--hcCHHHHHHHHHHhccCC
Confidence            36899999999999999998877654   56542    246899999999984    222  599999999999999999


Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-C---cchhhhhccCC
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-A---VPLRKMIIRRI  149 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-~---~~V~dIM~r~v  149 (351)
                      .+|++|||||.++++++.+++++ ++++.+.+++|||+|||+++.++++|+|+.||++.....+ .   ..+.++ ++++
T Consensus       187 ~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~  264 (413)
T PRK11573        187 VTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEI  264 (413)
T ss_pred             CChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCC
Confidence            99999999999999999999999 9999999999999999998889999999999998643321 1   224455 6899


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKDL  179 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe~  179 (351)
                      .+||+++++.++|+.|++++.|+|+|+|||
T Consensus       265 ~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy  294 (413)
T PRK11573        265 YFVPEGTPLSTQLVKFQRNKKKVGLVVDEY  294 (413)
T ss_pred             eEeCCCCcHHHHHHHHHhcCCeEEEEEecC
Confidence            999999999999999999999999999995

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=3.6e-33  Score=281.87  Aligned_cols=172  Identities=33%  Similarity=0.615  Sum_probs=151.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHh---CCC----CCCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcc
Q 018757            1 MAPIVRVLLCLFFPISYPISKILDLML---GKG----HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTE   73 (351)
Q Consensus         1 ~Ap~l~~~~~i~~Plv~pls~ll~~ll---g~~----~~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d   73 (351)
                      +||++++++++|+|++|++++++++++   |..    +....+.++++ ++.    ++.+.|.++++|++||+++|+|++
T Consensus       131 ~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~  205 (429)
T COG1253         131 IAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDD  205 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCC
Confidence            479999999999999999999988764   433    23356777888 776    467899999999999999999999


Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC--cchhhhhccCCcE
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPR  151 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~--~~V~dIM~r~v~~  151 (351)
                      .+|+++||||.++++++.+.+++ ++.+.+.+++|||+|||+++.++++|+++.|||+.....+.  ...... .+++++
T Consensus       206 ~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~  283 (429)
T COG1253         206 RTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLF  283 (429)
T ss_pred             cEeeeEeeecccEEEEcCCCCHH-HHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeE
Confidence            99999999999999999999999 99999999999999999977899999999999998766542  222223 469999


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 018757          152 VSEDMPLYDILNEFQKGHSHIAVVYKDL  179 (351)
Q Consensus       152 V~~~~~L~daL~~m~~~~~~~apVVDe~  179 (351)
                      |++++++.++|+.|++.+.|+|+|+|||
T Consensus       284 Vpet~~~~~lL~~~r~~~~hmAiVvDEy  311 (429)
T COG1253         284 VPETLSLSDLLEEFREERTHMAIVVDEY  311 (429)
T ss_pred             ecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence            9999999999999999999999999995

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.97  E-value=7.3e-31  Score=254.38  Aligned_cols=173  Identities=28%  Similarity=0.479  Sum_probs=152.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH---HhCCCC----CCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCccc
Q 018757            2 APIVRVLLCLFFPISYPISKILDL---MLGKGH----AVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEK   74 (351)
Q Consensus         2 Ap~l~~~~~i~~Plv~pls~ll~~---llg~~~----~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~   74 (351)
                      ++++.++..+|+|++|+++++++.   +||.+.    ....+.|||+.++..    ++.+|...+.+++|+.++|+|.++
T Consensus       125 s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~  200 (423)
T COG4536         125 SFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENL  200 (423)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccc
Confidence            678899999999999999998775   467552    457899999999984    556677778899999999999999


Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC-cchhhhh--ccCCcE
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-VPLRKMI--IRRIPR  151 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~-~~V~dIM--~r~v~~  151 (351)
                      +|.|||+||.++..++.|++.+ ++++.+....|+|+|||.++.++++|+++.||++++..+.+ ..-.+++  ..+++|
T Consensus       201 tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyF  279 (423)
T COG4536         201 TVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYF  279 (423)
T ss_pred             eeeeeeccccceeeecCCCCHH-HHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCee
Confidence            9999999999999999999999 89999999999999999999999999999999999876643 2222332  478999


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEecC
Q 018757          152 VSEDMPLYDILNEFQKGHSHIAVVYKDL  179 (351)
Q Consensus       152 V~~~~~L~daL~~m~~~~~~~apVVDe~  179 (351)
                      ||+.+++.+.|..|++++.|++.|||||
T Consensus       280 VPe~Tpl~~QL~~F~~~k~hialVVDEY  307 (423)
T COG4536         280 VPEGTPLSDQLVAFQRNKKHIALVVDEY  307 (423)
T ss_pred             cCCCCcHHHHHHHHHHhcceEEEEEecc
Confidence            9999999999999999999999999995

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.96  E-value=7.1e-29  Score=239.19  Aligned_cols=150  Identities=25%  Similarity=0.474  Sum_probs=130.6

Q ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHH
Q 018757           21 KILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTL  100 (351)
Q Consensus        21 ~ll~~llg~~~~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal  100 (351)
                      .++..++|.+.   .|++||+.|++    ++.++|.|+++|++||+++|+|.+.+|++||+||.++++++.++++. +++
T Consensus        21 ~~~~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~   92 (292)
T PRK15094         21 LLLSQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECL   92 (292)
T ss_pred             HHHHHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHH
Confidence            33444566543   58999999998    45678999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          101 NAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       101 ~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.+.+++++++|||+++.++++|+|+.+||+......  ...+.++ ++++++|++++++.++++.|++++.+++||+|+
T Consensus        93 ~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe  171 (292)
T PRK15094         93 DVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDE  171 (292)
T ss_pred             HHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC
Confidence            9999999999999987668899999999998644321  2347887 577789999999999999999999999999999


Q ss_pred             C
Q 018757          179 L  179 (351)
Q Consensus       179 ~  179 (351)
                      |
T Consensus       172 ~  172 (292)
T PRK15094        172 F  172 (292)
T ss_pred             C
Confidence            3

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.1e-26  Score=213.42  Aligned_cols=152  Identities=24%  Similarity=0.463  Sum_probs=136.2

Q ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHH
Q 018757           19 ISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLD   98 (351)
Q Consensus        19 ls~ll~~llg~~~~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~e   98 (351)
                      +..+++.+|..+   .-+++||..+++    ++++.+.|+.+-+.|+++++++.+++|+|||.||.+++++..+.++. +
T Consensus        19 fe~L~~~~f~gE---pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~   90 (293)
T COG4535          19 FERLLSQLFHGE---PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E   90 (293)
T ss_pred             HHHHHHHHhcCC---CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence            455555555433   356899999998    56778899999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEE
Q 018757           99 TLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY  176 (351)
Q Consensus        99 al~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVV  176 (351)
                      .+..|.+..||||||+.++++++.||+..|||++.....  ...++++ .||+++||+...+..+|+.|+.++.|||+|+
T Consensus        91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi  169 (293)
T COG4535          91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI  169 (293)
T ss_pred             HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence            999999999999999999889999999999999876543  3568886 8999999999999999999999999999999


Q ss_pred             ecC
Q 018757          177 KDL  179 (351)
Q Consensus       177 De~  179 (351)
                      |+|
T Consensus       170 DEf  172 (293)
T COG4535         170 DEF  172 (293)
T ss_pred             ecc
Confidence            995

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=99.80  E-value=1.7e-19  Score=185.10  Aligned_cols=299  Identities=37%  Similarity=0.506  Sum_probs=221.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCccccccccc
Q 018757            1 MAPIVRVLLCLFFPISYPISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAM   80 (351)
Q Consensus         1 ~Ap~l~~~~~i~~Plv~pls~ll~~llg~~~~~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~dIM   80 (351)
                      +.|++++++++++|+.||++++ ++++|...+..+.+.+++.++.+++.|+++ |.+..+|..+|.+++.|.++.+++||
T Consensus       133 ~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evm  210 (498)
T KOG2118|consen  133 LVPLVRILSFLCLPIAYPFSKL-DTALGLNLGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVM  210 (498)
T ss_pred             ceehHHHHHHHhhhhheehhhh-hhhhccccccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhc
Confidence            4689999999999999999999 999998877778889999999998887665 99999999999999999999999999


Q ss_pred             ccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc----ccCCcchhhhhccCCcEecCCC
Q 018757           81 TPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD----YRDAVPLRKMIIRRIPRVSEDM  156 (351)
Q Consensus        81 tPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~----~~~~~~V~dIM~r~v~~V~~~~  156 (351)
                      ||..++++++.+..+..+.+..+.++||||+||++.+..+.+|.+....++...    .....++...|.+++..+++++
T Consensus       211 tpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~  290 (498)
T KOG2118|consen  211 TPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENM  290 (498)
T ss_pred             cchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcc
Confidence            999999999999999877888889999999999998777788887777776655    3335678888889999999999


Q ss_pred             CHHHHHHHHHhCCCcEEEEEecCCccccccccccCCCCCCCCCCcccccccccc-ccccccccccccchhh-----hhcc
Q 018757          157 PLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGV-TAAGQNLRNKLESKDA-----QQTK  230 (351)
Q Consensus       157 ~L~daL~~m~~~~~~~apVVDe~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~  230 (351)
                      ++.+.++.|++.+.|++.|....+...--..   +.. ...-.++.......+. .-.|..++--...+++     +...
T Consensus       291 ~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l---~~~-~~~~~ev~de~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  366 (498)
T KOG2118|consen  291 PLLDLLNEFQKGKSHMAVVRNGHVDIFVLTL---EDL-EEVVKEVEDEEDKEEIKFETGIFTLRGIGDLDAGAVTDIDQL  366 (498)
T ss_pred             cHHHHHHHHhhhhceeEEEecCCcceeeEec---cch-hhhcceeccccccccchhcccchhhcccccccccccchhhhh
Confidence            9999999999999999999875433211110   100 0000001000000000 0001110000000110     0000


Q ss_pred             CCCCCCCCccccCCCCccccccCCCCCCCCCCCCC-ceEEEEeHHHHHHHHHhcccccchhhhhhHHHHhhhccccccc
Q 018757          231 KVPPATPTFNKRHRGCSYCILDFENGPFPDFPSND-EAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMHASQE  308 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vGiiT~~Dvie~l~~~ei~de~d~~~~~~~~~~~~~~~~~~  308 (351)
                      +   ...++++|+..++-++++....+++.....+ -..|++|++++++++++++|.++.+.+...++..+.+.+++.-
T Consensus       367 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~  442 (498)
T KOG2118|consen  367 G---ERSPIKERSPRSSESLLDSRKSAFEDLAELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLASLM  442 (498)
T ss_pred             c---ccccccccCCCCCccccccccccccccccccccCccceehhhhhccccchhhhccccceechhhhhhhHhhhhhh
Confidence            0   3345677777667678888877777655553 4578899999999999999999999999999999988766643

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.74  E-value=3.9e-17  Score=166.25  Aligned_cols=135  Identities=14%  Similarity=0.113  Sum_probs=116.5

Q ss_pred             CCCHHHHHHHHHhcccccccC------CCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHH--
Q 018757           34 LLRRAELKTFVNFHGNEAGKG------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMT--  105 (351)
Q Consensus        34 ~~s~eEL~~LI~~~~~es~~~------G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~--  105 (351)
                      .++.+|+..+++.    ..++      +.++++|+++++++++|++.+|+++|++  +++++++++|+. ++++.|++  
T Consensus        89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence            5788999999974    3333      4799999999999999999999999985  889999999999 99999986  


Q ss_pred             ---cCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          106 ---MGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       106 ---~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                         ++...+||++++ ++++|+|+.+|++....  +.+++++|.++++++++++++.++++.|++++...+||+|+
T Consensus       162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~~--~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~  234 (449)
T TIGR00400       162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAKP--EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN  234 (449)
T ss_pred             CCccceeEEEEECCC-CeEEEEEEHHHHhcCCC--CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC
Confidence               334566777764 88999999999987543  45799998888889999999999999999999999999998

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.73  E-value=6.1e-17  Score=153.59  Aligned_cols=137  Identities=14%  Similarity=0.253  Sum_probs=115.7

Q ss_pred             CCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhh-------cCcccccccccccCcceEEEcCCCCchHHHHHHHHHc
Q 018757           34 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGAL-------ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM  106 (351)
Q Consensus        34 ~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l-------~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~  106 (351)
                      -++.++|...+..    -.|.-.|+.++.+.+.+-.       .+.+.++.|||++  +|++++.+++++ ++.+++.+|
T Consensus       202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            4788999988873    3445567777765544322       3678999999996  999999999999 999999999


Q ss_pred             CCcEeeeeeCCCCcEEEEEEhhhhhccccc---------CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 018757          107 GHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK  177 (351)
Q Consensus       107 ~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---------~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVD  177 (351)
                      ++..+||+|++ .+++|+|+.+|+++....         ...+++.+|..++.++.++++..+++..|.+.+.|.+||+|
T Consensus       275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld  353 (382)
T COG3448         275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD  353 (382)
T ss_pred             Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence            99999999986 799999999999973221         14578999999999999999999999999999999999999


Q ss_pred             c
Q 018757          178 D  178 (351)
Q Consensus       178 e  178 (351)
                      +
T Consensus       354 ~  354 (382)
T COG3448         354 A  354 (382)
T ss_pred             C
Confidence            8

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.72  E-value=1.7e-17  Score=154.75  Aligned_cols=109  Identities=17%  Similarity=0.320  Sum_probs=99.9

Q ss_pred             HHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--Ccchh
Q 018757           65 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLR  142 (351)
Q Consensus        65 I~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~  142 (351)
                      +..+.++.+.+|+++|++  +++++.+++|+. ++.+++.++++...||+++  ++++|+++..|+..+..++  +.+|+
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~  237 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS  237 (294)
T ss_pred             EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence            345566889999999996  889999999999 9999999999999999986  4899999999999887664  67899


Q ss_pred             hhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          143 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       143 dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++|.+.+++|.+++.+.||+++|..+++..++|+|.
T Consensus       238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds  273 (294)
T COG2524         238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS  273 (294)
T ss_pred             HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc
Confidence            999999999999999999999999999999999996

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.70  E-value=3.2e-16  Score=159.61  Aligned_cols=133  Identities=14%  Similarity=0.242  Sum_probs=114.4

Q ss_pred             CCCCHHHHHHHHHhcccccccCCCCCH-----HHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757           33 VLLRRAELKTFVNFHGNEAGKGGDLTH-----DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  107 (351)
Q Consensus        33 ~~~s~eEL~~LI~~~~~es~~~G~L~~-----~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~  107 (351)
                      ..+|++||..++..    .+..|.|.+     +|++++++++.+.+.     |.+  +++++++++++. ++++.|.+++
T Consensus        43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~  110 (450)
T TIGR01302        43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG  110 (450)
T ss_pred             CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence            46899999998874    445788884     899999999977654     553  668999999999 9999999999


Q ss_pred             CcEeeeeeCCC--CcEEEEEEhhhhhcccccCCcchhhhhc-cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          108 HSRVPVYSGNP--TNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       108 ~sriPVvd~~~--~~IVGIVt~kDLl~~~~~~~~~V~dIM~-r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++||++++.  ++++|+|+.+||+.... ...++.++|. .+++++++++++.++++.|.+++.+.+||+|+
T Consensus       111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe  183 (450)
T TIGR01302       111 ISGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK  183 (450)
T ss_pred             CCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence            99999998753  68999999999986432 3468999987 48999999999999999999999999999998

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.63  E-value=2.2e-15  Score=145.96  Aligned_cols=114  Identities=21%  Similarity=0.302  Sum_probs=103.5

Q ss_pred             HHHHHHHhhc-----CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           61 ETTIIAGALE-----LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        61 E~~mI~~~l~-----l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      -+.||.+++.     -+-++|.|||+|..+..++..+++++ +..++..+.|++||||++.. .+++|+|+.||+....+
T Consensus       170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~  247 (432)
T COG4109         170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP  247 (432)
T ss_pred             HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC
Confidence            3667777765     34468999999999999999999999 89999999999999999986 78999999999998765


Q ss_pred             cCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          136 RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       136 ~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                        .+++..+|.+.+++|.+.+++..+.+.|.-.++.++||+|+
T Consensus       248 --~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~  288 (432)
T COG4109         248 --STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS  288 (432)
T ss_pred             --CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC
Confidence              56899999999999999999999999999999999999998

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.59  E-value=3.4e-14  Score=146.11  Aligned_cols=132  Identities=17%  Similarity=0.267  Sum_probs=113.4

Q ss_pred             CCCCHHHHHHHHHhcccccccCCCCC-----HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757           33 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  107 (351)
Q Consensus        33 ~~~s~eEL~~LI~~~~~es~~~G~L~-----~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~  107 (351)
                      ..+|++||..++.    +++..|.|.     +++.++++++..     ++++|.+  +++++++++++. ++++.|.+++
T Consensus        50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~  117 (486)
T PRK05567         50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYG  117 (486)
T ss_pred             CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence            4689999999887    345677777     578889998876     4567764  778999999999 9999999999


Q ss_pred             CcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhc-cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          108 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       108 ~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~-r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++||++++ ++++|+|+.+||..... ...++.++|. ++++++++++++.+++..|.+++.+.+||+|+
T Consensus       118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~~-~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe  187 (486)
T PRK05567        118 ISGVPVVDEN-GKLVGIITNRDVRFETD-LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD  187 (486)
T ss_pred             CCEEEEEccC-CEEEEEEEHHHhhhccc-CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            9999999865 89999999999975432 2467999987 78899999999999999999999999999998

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.56  E-value=2.5e-14  Score=139.30  Aligned_cols=105  Identities=19%  Similarity=0.124  Sum_probs=91.6

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----Ccchhhhhcc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIR  147 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r  147 (351)
                      ..++|+++|++..++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+|+.+....+    ..++.++|.+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~  277 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP  277 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence            6678999998544788999999999 99999999998888888765 8999999999997654321    3579999999


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++.+++++.++++.|.+++.+.+||+|+
T Consensus       278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~  308 (326)
T PRK10892        278 GGIRVRPGILAVDALNLMQSRHITSVLVADG  308 (326)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCcEEEEeeC
Confidence            9999999999999999999999999999976

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.56  E-value=5.5e-14  Score=114.56  Aligned_cols=92  Identities=20%  Similarity=0.374  Sum_probs=81.0

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--CcchhhhhccCCcEecCCCCHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL  162 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~L~daL  162 (351)
                      ++.+++.++++. ++++.|.+.+++++||++++ ++++|+|+.+|+.+.....  ..++.++|..++.++.+++++.+++
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al   79 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL   79 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence            457899999999 89999999999999999875 8899999999998743222  3568899988899999999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 018757          163 NEFQKGHSHIAVVYKD  178 (351)
Q Consensus       163 ~~m~~~~~~~apVVDe  178 (351)
                      ..|.+++.+.+||+|+
T Consensus        80 ~~m~~~~~~~lpVvd~   95 (111)
T cd04603          80 RIFRETEPPVVAVVDK   95 (111)
T ss_pred             HHHHHcCCCeEEEEcC
Confidence            9999999999999987

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.54  E-value=1.1e-13  Score=140.38  Aligned_cols=117  Identities=20%  Similarity=0.232  Sum_probs=106.4

Q ss_pred             CCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC-----CcEeeeeeCCCCcEEEEEEhhhh
Q 018757           56 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNL  130 (351)
Q Consensus        56 ~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~-----~sriPVvd~~~~~IVGIVt~kDL  130 (351)
                      .+++++++.++.++.+.+.+++.+|+.  +++++++++|+. +++..+++.+     ...+.|+|.+ ++++|+++.+++
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L  189 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL  189 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence            478999999999999999999999995  899999999999 9999999654     4567788875 789999999999


Q ss_pred             hcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          131 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       131 l~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.+.+  ...++++|.+.+++|.++++.+++.+.|.+++.-.+||||+
T Consensus       190 l~a~~--~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~  235 (451)
T COG2239         190 LTAEP--DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE  235 (451)
T ss_pred             hcCCc--HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence            97765  45899999999999999999999999999999999999998

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=9.8e-14  Score=114.24  Aligned_cols=92  Identities=16%  Similarity=0.223  Sum_probs=76.4

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----Ccchhh------hhccCCcEec
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRK------MIIRRIPRVS  153 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~V~d------IM~r~v~~V~  153 (351)
                      ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+||+.....+     ..++.+      +|..++.+++
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS   79 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence            567899999999 89999999999999999874 8999999999998644222     112333      2335578999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          154 EDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       154 ~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~l~~~~~~m~~~~~~~l~Vvd~  104 (120)
T cd04641          80 PDDCLRTIFDLIVKARVHRLVVVDE  104 (120)
T ss_pred             CCCcHHHHHHHHHhcCccEEEEECC
Confidence            9999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.2e-13  Score=112.91  Aligned_cols=92  Identities=15%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcchhhhhccCCcEecCCCCHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY  159 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V~dIM~r~v~~V~~~~~L~  159 (351)
                      .+.++++++++. ++++.|.+.++..+||++++ ++++|+|+.+|+++....     ...++.++|.++++++.+++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   79 (114)
T cd04619           2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH   79 (114)
T ss_pred             ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence            466899999999 89999999999999999875 889999999999864321     14578999888999999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 018757          160 DILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       160 daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.|.+++.+.+||+|+
T Consensus        80 ~a~~~m~~~~~~~lpVvd~   98 (114)
T cd04619          80 DVWQVMKQRGLKNIPVVDE   98 (114)
T ss_pred             HHHHHHHHcCCCeEEEECC
Confidence            9999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.53  E-value=1.3e-13  Score=111.07  Aligned_cols=92  Identities=12%  Similarity=0.260  Sum_probs=81.7

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  164 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~  164 (351)
                      ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++........++.++|.+++.++++++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   80 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK   80 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence            567899999999 89999999999999999875 8999999999998654433346889888899999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 018757          165 FQKGHSHIAVVYKD  178 (351)
Q Consensus       165 m~~~~~~~apVVDe  178 (351)
                      |.+.+.+.+||+++
T Consensus        81 ~~~~~~~~~~Vv~~   94 (110)
T cd04605          81 MERHNISALPVVDA   94 (110)
T ss_pred             HHHhCCCEEeEECC
Confidence            99999999999987

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.6e-13  Score=111.78  Aligned_cols=93  Identities=18%  Similarity=0.258  Sum_probs=80.8

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcchhhhhccCCcEecCCCCHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY  159 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V~dIM~r~v~~V~~~~~L~  159 (351)
                      ++.++.+++++. ++++.|.+++++.+||++++.++++|+++.+|+++....     ...++.++|.++++++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK   80 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence            567899999999 899999999999999998633689999999999864211     13578899888899999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 018757          160 DILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       160 daL~~m~~~~~~~apVVDe  178 (351)
                      +++..|.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~~~~~~~Vvd~   99 (114)
T cd04630          81 YCARLMERTNIRRAPVVEN   99 (114)
T ss_pred             HHHHHHHHcCCCEeeEeeC
Confidence            9999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.52  E-value=6.2e-14  Score=135.99  Aligned_cols=104  Identities=14%  Similarity=0.115  Sum_probs=90.7

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---CCcchhhhhccCC
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRI  149 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---~~~~V~dIM~r~v  149 (351)
                      ..+|+++|++..++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+.+....   ...++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            468999998632388999999999 89999999999999999875 899999999998754322   2457899998999


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++.++.++.++++.|.+++...+||+|+
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  302 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDE  302 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            99999999999999999999999999987

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.7e-13  Score=110.61  Aligned_cols=80  Identities=15%  Similarity=0.314  Sum_probs=72.3

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  164 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~  164 (351)
                      +++++++++++. ++.+.|.+++++.+||++++.++++|+|+.+|+.+...             +.++.+++++.+|++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~   67 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL   67 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence            578999999999 99999999999999999864478999999999986431             7789999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 018757          165 FQKGHSHIAVVYKD  178 (351)
Q Consensus       165 m~~~~~~~apVVDe  178 (351)
                      |.+++.+.+||+|+
T Consensus        68 m~~~~~~~lpVvd~   81 (98)
T cd04618          68 LLKNKIHRLPVIDP   81 (98)
T ss_pred             HHHCCCCEeeEEEC
Confidence            99999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.5e-13  Score=110.98  Aligned_cols=92  Identities=14%  Similarity=0.269  Sum_probs=81.0

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---CcchhhhhccCCcEecCCCCHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI  161 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~~V~dIM~r~v~~V~~~~~L~da  161 (351)
                      ++.+++.++++. ++++.|.+++++++||++++ ++++|+++.+|++......   ..++.++|.+++.++.+++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            456899999999 89999999999999999875 8899999999998654321   346888888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 018757          162 LNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       162 L~~m~~~~~~~apVVDe  178 (351)
                      +..|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~Vv~~   96 (111)
T cd04626          80 LDIMREKQIGRLPVVDD   96 (111)
T ss_pred             HHHHHHcCCCeeeEeEC
Confidence            99999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=2.2e-13  Score=109.64  Aligned_cols=92  Identities=12%  Similarity=0.202  Sum_probs=80.6

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----CcchhhhhccCCcEecCCCCHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLY  159 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~V~dIM~r~v~~V~~~~~L~  159 (351)
                      ++++++++.++. ++++.|.+.+++++||++++ ++++|+++.+|++.+....     ..++.++|.+++.+++++.++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   79 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD   79 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence            456789999999 89999999999999999875 7899999999998654321     3478899878899999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 018757          160 DILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       160 daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.|.+.+.+.+||+++
T Consensus        80 ~~l~~~~~~~~~~~~Vv~~   98 (113)
T cd04623          80 EAMALMTERRFRHLPVVDG   98 (113)
T ss_pred             HHHHHHHHcCCCEeEEEeC
Confidence            9999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.51  E-value=2.1e-13  Score=109.95  Aligned_cols=92  Identities=41%  Similarity=0.638  Sum_probs=79.3

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC--cchhhhhccCCcEecCCCCHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDIL  162 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~--~~V~dIM~r~v~~V~~~~~L~daL  162 (351)
                      +++++++++++. ++++.|.+.+++.+||++++.++++|+++.+|+++....+.  .++.++ ++++.++.+++++.+++
T Consensus         2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~   79 (111)
T cd04590           2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL   79 (111)
T ss_pred             ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence            577899999999 99999999999999999864378999999999987654321  356665 57889999999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 018757          163 NEFQKGHSHIAVVYKD  178 (351)
Q Consensus       163 ~~m~~~~~~~apVVDe  178 (351)
                      +.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~Vv~~   95 (111)
T cd04590          80 EEMRKERSHMAIVVDE   95 (111)
T ss_pred             HHHHhcCCcEEEEEEC
Confidence            9999999999999987

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.51  E-value=2e-13  Score=111.14  Aligned_cols=92  Identities=16%  Similarity=0.218  Sum_probs=80.3

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCcEecCCCCHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD  160 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~L~d  160 (351)
                      ++.++++++++. ++++.|.+.+++++||++++ ++++|+++.+||+......    ..++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   79 (115)
T cd04593           2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH   79 (115)
T ss_pred             CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence            345789999999 89999999999999999875 8999999999998654321    23488888888999999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 018757          161 ILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       161 aL~~m~~~~~~~apVVDe  178 (351)
                      +++.|.+++...+||+|+
T Consensus        80 ~l~~~~~~~~~~~~Vvd~   97 (115)
T cd04593          80 ALDRMASRGLRQLPVVDR   97 (115)
T ss_pred             HHHHHHHcCCceeeEEeC
Confidence            999999999999999987

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.50  E-value=3.4e-13  Score=108.80  Aligned_cols=90  Identities=18%  Similarity=0.228  Sum_probs=81.2

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  164 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~  164 (351)
                      ++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++....  ..++.++|..++.++++++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~v~~~~~l~~~~~~   78 (108)
T cd04596           3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKDP--DTTIEKVMTKNPITVNPKTSVASVAHM   78 (108)
T ss_pred             ccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhcccc--cccHHHHhcCCCeEECCCCCHHHHHHH
Confidence            567899999999 99999999999999999875 89999999999986532  457999988889999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 018757          165 FQKGHSHIAVVYKD  178 (351)
Q Consensus       165 m~~~~~~~apVVDe  178 (351)
                      |.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~Vv~~   92 (108)
T cd04596          79 MIWEGIEMLPVVDD   92 (108)
T ss_pred             HHHcCCCeeeEEcC
Confidence            99999999999987

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.49  E-value=3e-13  Score=111.23  Aligned_cols=92  Identities=16%  Similarity=0.343  Sum_probs=80.9

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--------------CcchhhhhccCCc
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP  150 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--------------~~~V~dIM~r~v~  150 (351)
                      ++.+++++.++. ++.+.|.+.+++++||++++ ++++|+|+.+||+......              ..++.++|.+.++
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            567899999999 99999999999999999875 8899999999997643221              2368899888899


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~  108 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVDE  108 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEcC
Confidence            9999999999999999999999999987

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=3.7e-13  Score=108.73  Aligned_cols=92  Identities=14%  Similarity=0.273  Sum_probs=80.6

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---CcchhhhhccCCcEecCCCCHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI  161 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~~V~dIM~r~v~~V~~~~~L~da  161 (351)
                      ++.+++.++++. ++++.|.+.+++++||++++ ++++|+|+.+|+++.....   ..++.++|.++++++.+++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence            356789999999 89999999999999999876 8999999999997653322   357888888899999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 018757          162 LNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       162 L~~m~~~~~~~apVVDe  178 (351)
                      ++.|.+++...+||+|+
T Consensus        80 ~~~~~~~~~~~~~Vv~~   96 (112)
T cd04624          80 AKLMRKNNIRHHLVVDK   96 (112)
T ss_pred             HHHHHHcCccEEEEEcC
Confidence            99999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=3.9e-13  Score=108.42  Aligned_cols=92  Identities=24%  Similarity=0.386  Sum_probs=80.7

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--CCcchhhhhccCCcEecCCCCHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL  162 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--~~~~V~dIM~r~v~~V~~~~~L~daL  162 (351)
                      ++.++..++++. ++++.|.+.++.++||++++ ++++|+|+.+|+++....  ...++.++|.++++++++++++.+++
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~   79 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL   79 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence            456789999999 89999999999999999875 789999999999865322  23578899888999999999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 018757          163 NEFQKGHSHIAVVYKD  178 (351)
Q Consensus       163 ~~m~~~~~~~apVVDe  178 (351)
                      +.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~Vv~~   95 (111)
T cd04639          80 RLMQQGGAPAVPVVDG   95 (111)
T ss_pred             HHHHhcCCceeeEEcC
Confidence            9999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.47  E-value=2.1e-13  Score=119.48  Aligned_cols=119  Identities=22%  Similarity=0.324  Sum_probs=93.6

Q ss_pred             cCCCCCHHH---HHHHHHhhcC--cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEh
Q 018757           53 KGGDLTHDE---TTIIAGALEL--TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILV  127 (351)
Q Consensus        53 ~~G~L~~~E---~~mI~~~l~l--~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~  127 (351)
                      +.|.+++.-   +.++..+.+-  ..++++.||+.  +++.+.+++++. +++++|.++|||.+||+++  ++++|-|+.
T Consensus        39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE  113 (187)
T COG3620          39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE  113 (187)
T ss_pred             hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence            356666543   2233333322  34678999984  899999999999 9999999999999999986  689999999


Q ss_pred             hhhhcccccC-----CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          128 KNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       128 kDLl~~~~~~-----~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++.++..++     ..+++++|-.++++|++++++..+-.++..++  .+.|++.
T Consensus       114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e~  167 (187)
T COG3620         114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVEN  167 (187)
T ss_pred             HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEeC
Confidence            9998876443     56789999999999999999999888887764  3556644

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=4.8e-13  Score=111.23  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=77.6

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCc-----------------chhhhhcc
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV-----------------PLRKMIIR  147 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~-----------------~V~dIM~r  147 (351)
                      +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++........                 ...+.|..
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence            567899999999 89999999999999999876 899999999999875432211                 01234567


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++.++++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~  110 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVDE  110 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEECC
Confidence            8899999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=4.8e-13  Score=109.96  Aligned_cols=92  Identities=12%  Similarity=0.244  Sum_probs=79.7

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhcc--CCcEecCCCCH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIR--RIPRVSEDMPL  158 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r--~v~~V~~~~~L  158 (351)
                      ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++....    ...++.++|.+  +++++++++++
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l   79 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV   79 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence            456899999999 89999999999999999875 789999999998875432    13467788764  68899999999


Q ss_pred             HHHHHHHHhCCCcEEEEEec
Q 018757          159 YDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       159 ~daL~~m~~~~~~~apVVDe  178 (351)
                      .+++++|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~lpVvd~   99 (118)
T cd04617          80 LEAAKKLIEHQVDSLPVVEK   99 (118)
T ss_pred             HHHHHHHHHcCCCEeeEEeC
Confidence            99999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=5.3e-13  Score=109.86  Aligned_cols=93  Identities=15%  Similarity=0.272  Sum_probs=80.7

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---------------CcchhhhhccCC
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------AVPLRKMIIRRI  149 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---------------~~~V~dIM~r~v  149 (351)
                      ++.+++++.++. ++++.|.+.+++.+||++++.++++|+|+.+|++......               ..++.++|.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            456889999999 9999999999999999987447899999999998644321               236888888889


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++++++.++++.|.+.+.+.+||+|+
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~  109 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVDD  109 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEcC
Confidence            99999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=4.2e-13  Score=110.89  Aligned_cols=93  Identities=16%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--C-----------cchhhhhccCCcE
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--A-----------VPLRKMIIRRIPR  151 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~-----------~~V~dIM~r~v~~  151 (351)
                      ++.+++.++++. ++++.|.+++++++||++++.++++|+|+.+|+++.....  .           ..+.++|..++.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            456899999999 8999999999999999986437899999999988643221  0           0112356778889


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          152 VSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       152 V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.+++++.+|++.|.+++.+.+||+|+
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd~  107 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVDN  107 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEECC
Confidence            999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.47  E-value=7.4e-13  Score=107.50  Aligned_cols=91  Identities=14%  Similarity=0.139  Sum_probs=79.2

Q ss_pred             eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---CCcchhhhhccCCcEecCCCCHHHHH
Q 018757           86 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDIL  162 (351)
Q Consensus        86 VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---~~~~V~dIM~r~v~~V~~~~~L~daL  162 (351)
                      .++++.++++. ++++.|.+.++..+||++++ ++++|+|+.+|+++....   ...++.++|..++.++++++++.+++
T Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04607           4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL   81 (113)
T ss_pred             ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence            45789999999 89999999999999999875 889999999998754322   13568899877888999999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 018757          163 NEFQKGHSHIAVVYKD  178 (351)
Q Consensus       163 ~~m~~~~~~~apVVDe  178 (351)
                      +.|.+++.+.+||+|+
T Consensus        82 ~~~~~~~~~~~~Vv~~   97 (113)
T cd04607          82 ALMRERSIRHLPILDE   97 (113)
T ss_pred             HHHHHCCCCEEEEECC
Confidence            9999999999999987

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=5.1e-13  Score=113.57  Aligned_cols=92  Identities=16%  Similarity=0.229  Sum_probs=80.6

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---------------------------
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------------------  137 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---------------------------  137 (351)
                      ++.++++++++. ++++.|.+.+++++||++++ ++++|+|+..|+++.....                           
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            456899999999 99999999999999999875 8999999999998654211                           


Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..++.++|..++.++.+++++.++++.|.+++.+.+||+++
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~  120 (135)
T cd04621          80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN  120 (135)
T ss_pred             cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence            24688998888899999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=6.6e-13  Score=107.70  Aligned_cols=90  Identities=18%  Similarity=0.225  Sum_probs=77.3

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---------CcchhhhhccCCcEecCC
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------AVPLRKMIIRRIPRVSED  155 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---------~~~V~dIM~r~v~~V~~~  155 (351)
                      ++++++.++++. ++++.|.+.+++.+||++++ ++++|+|+.+|+++.....         ..++.++|..++.+++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~   79 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD   79 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence            567899999999 99999999999999999874 7899999999998654321         356888888889999999


Q ss_pred             CCHHHHHHHHHhCCCcEEEEEec
Q 018757          156 MPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       156 ~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++.+++..|.+.+  .+||+|+
T Consensus        80 ~~l~~a~~~~~~~~--~~~Vv~~  100 (116)
T cd04643          80 ADIEEILHLLIDQP--FLPVVDD  100 (116)
T ss_pred             CCHHHHHHHHhcCC--ceeEEeC
Confidence            99999999998864  5889987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=7.1e-13  Score=108.66  Aligned_cols=92  Identities=20%  Similarity=0.325  Sum_probs=80.6

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-------------CCcchhhhhccCCcE
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-------------DAVPLRKMIIRRIPR  151 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-------------~~~~V~dIM~r~v~~  151 (351)
                      ++.++.+++++. ++++.|.+.+++++||++++ ++++|+++.+|+++....             ...++.++|.+++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence            456799999999 99999999999999999875 889999999999865321             235688888888999


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          152 VSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       152 V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++++.++++.|.+++.+.+||+|+
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~Vv~~  106 (122)
T cd04803          80 VTPDTPLREAAEIMVENKIGCLPVVDD  106 (122)
T ss_pred             eCCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence            999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.46  E-value=6.6e-13  Score=136.19  Aligned_cols=102  Identities=15%  Similarity=0.207  Sum_probs=91.0

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP  150 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~  150 (351)
                      +...++.++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+.....  ..++.++|.++++
T Consensus        86 l~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~--~~~V~diMt~~~i  159 (479)
T PRK07807         86 VAWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDR--FTQVRDVMSTDLV  159 (479)
T ss_pred             Hhhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCcc--CCCHHHhccCCce
Confidence            345678899974  778999999999 99999999999999999865 78999999999975432  3579999999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++.+++..|.+++.+.+||+|+
T Consensus       160 tV~~d~sL~eAl~lM~~~~i~~LPVVD~  187 (479)
T PRK07807        160 TLPAGTDPREAFDLLEAARVKLAPVVDA  187 (479)
T ss_pred             EECCCCcHHHHHHHHHhcCCCEEEEEcC
Confidence            9999999999999999999999999987

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.45  E-value=1.2e-12  Score=104.33  Aligned_cols=89  Identities=10%  Similarity=0.195  Sum_probs=79.3

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  164 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~  164 (351)
                      ++..+++++++. ++++.|.+++++.+||++ + ++++|+++.+|++....  ..++.++|..++.++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   76 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL   76 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence            456789999999 899999999999999997 3 78999999999987543  346889988889999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 018757          165 FQKGHSHIAVVYKD  178 (351)
Q Consensus       165 m~~~~~~~apVVDe  178 (351)
                      |.+++...+||+|+
T Consensus        77 ~~~~~~~~~~Vv~~   90 (105)
T cd04599          77 MEEKKIERLPVLRE   90 (105)
T ss_pred             HHHcCCCEeeEEEC
Confidence            99999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.45  E-value=5.3e-13  Score=108.52  Aligned_cols=92  Identities=13%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcC-CcEeeeeeCCCCcEEEEEEhhhhhcccccC--Ccchhhhhcc--CCcEecCCCCHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIR--RIPRVSEDMPLY  159 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~-~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r--~v~~V~~~~~L~  159 (351)
                      ++.++++++++. ++++.|.+++ ++.+||++++ ++++|+|+.+||+......  ..++.++|..  +++++.+++++.
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~   79 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA   79 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence            456899999999 8999987765 8999999875 8899999999998765322  3578888643  356899999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 018757          160 DILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       160 daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.|.+++.+.+||+|+
T Consensus        80 ~a~~~~~~~~~~~l~Vv~~   98 (114)
T cd04801          80 EVLKLLEEQGLDELAVVED   98 (114)
T ss_pred             HHHHHHHHCCCCeeEEEcC
Confidence            9999999999999999987

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.1e-12  Score=107.41  Aligned_cols=92  Identities=12%  Similarity=0.245  Sum_probs=79.9

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc-------------cCCcchhhhhccCCcE
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR  151 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~-------------~~~~~V~dIM~r~v~~  151 (351)
                      ++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|++....             ....++.++|.+++..
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence            567899999999 89999999999999999864 89999999999986321             1234678888888899


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          152 VSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       152 V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++++.+++..|.+.+.+.+||+|+
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~Vvd~  106 (122)
T cd04635          80 VTPDDSIATAVELMLEHDIGRLPVVNE  106 (122)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeeeEEcC
Confidence            999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.44  E-value=1.5e-12  Score=104.67  Aligned_cols=91  Identities=16%  Similarity=0.242  Sum_probs=80.1

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---CCcchhhhhccCCcEecCCCCHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDI  161 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---~~~~V~dIM~r~v~~V~~~~~L~da  161 (351)
                      ++.++++++++. ++++.|.+.++..+||+++  ++++|+++.+||++....   ...++.++|.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~   78 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA   78 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence            456899999999 8999999999999999986  789999999999865432   2457889988889999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 018757          162 LNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       162 L~~m~~~~~~~apVVDe  178 (351)
                      ++.|.+.+.+.+||+|+
T Consensus        79 l~~~~~~~~~~~~Vv~~   95 (111)
T cd04611          79 RQLMREHGIRHLVVVDD   95 (111)
T ss_pred             HHHHHHcCCeEEEEECC
Confidence            99999999999999987

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.44  E-value=1.6e-12  Score=103.92  Aligned_cols=89  Identities=12%  Similarity=0.054  Sum_probs=78.2

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  164 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~  164 (351)
                      ++.++++++++. ++++.|.+.++..+||++++ ++++|+++.+|++....   .++.++|.+.+.++.+++++.++++.
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR   76 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence            456889999999 89999999999999999865 88999999999987532   35788877777889999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 018757          165 FQKGHSHIAVVYKD  178 (351)
Q Consensus       165 m~~~~~~~apVVDe  178 (351)
                      |.+++...+||+|+
T Consensus        77 ~~~~~~~~~~Vv~~   90 (106)
T cd04582          77 MFAHDMSWLPCVDE   90 (106)
T ss_pred             HHHCCCCeeeEECC
Confidence            99999999999987

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.3e-12  Score=108.44  Aligned_cols=91  Identities=16%  Similarity=0.309  Sum_probs=78.2

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----------------CCcchhhhhcc
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----------------DAVPLRKMIIR  147 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----------------~~~~V~dIM~r  147 (351)
                      ++.++.+++++. ++++.|.+.+++.+||++++ ++++|+++.+|++.....                 ...++.++|.+
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS   79 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence            456899999999 99999999999999999876 889999999998753211                 12468889888


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 018757          148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYK  177 (351)
Q Consensus       148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVD  177 (351)
                      +++++++++++.+++..|.+.+.+.+||++
T Consensus        80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~  109 (128)
T cd04632          80 PVITASPNDSVRDAVDRMLENDDSSVVVVT  109 (128)
T ss_pred             CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence            899999999999999999999999998885

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.44  E-value=1.5e-12  Score=104.60  Aligned_cols=91  Identities=19%  Similarity=0.278  Sum_probs=79.7

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC---cchhhhhccCCcEecCCCCHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VPLRKMIIRRIPRVSEDMPLYDI  161 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~---~~V~dIM~r~v~~V~~~~~L~da  161 (351)
                      ++..+++++++. ++++.|.+.+++++||+++  ++++|+++.+|+++......   .++.++|.++++++.+++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   78 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA   78 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence            456899999999 9999999999999999986  78999999999987543321   25778888899999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 018757          162 LNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       162 L~~m~~~~~~~apVVDe  178 (351)
                      ++.|.+.+.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~V~~~   95 (111)
T cd04612          79 LKRMAERDIGRLPVVDD   95 (111)
T ss_pred             HHHHHhCCCCeeeEEcC
Confidence            99999999999999987

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.44  E-value=1.7e-12  Score=104.49  Aligned_cols=91  Identities=19%  Similarity=0.324  Sum_probs=80.0

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--CcchhhhhccCCcEecCCCCHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL  162 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~L~daL  162 (351)
                      ++++++.++++. ++++.|.+.+++++||+++  ++++|+++.+|+++....+  ..++.++|..++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence            467899999999 8999999999999999986  7899999999998764332  2468888878889999999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 018757          163 NEFQKGHSHIAVVYKD  178 (351)
Q Consensus       163 ~~m~~~~~~~apVVDe  178 (351)
                      +.|.+.+.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~V~~~   94 (110)
T cd04588          79 RLMNKHNVGRLIVTDD   94 (110)
T ss_pred             HHHHhcCCCEEEEECC
Confidence            9999999999999987

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.44  E-value=1.5e-12  Score=104.91  Aligned_cols=91  Identities=18%  Similarity=0.340  Sum_probs=80.2

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--CCcchhhhhccCCcEecCCCCHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL  162 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--~~~~V~dIM~r~v~~V~~~~~L~daL  162 (351)
                      ++.+++.+.++. ++.+.|.+.+++++||+++  ++++|+|+..|++.....  ...++.++|.++++++.+++++.+++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   79 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ   79 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence            567899999999 8999999999999999986  789999999998864422  24578899888999999999999999


Q ss_pred             HHHHhCCCcEEEEEec
Q 018757          163 NEFQKGHSHIAVVYKD  178 (351)
Q Consensus       163 ~~m~~~~~~~apVVDe  178 (351)
                      ..|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~V~~~   95 (110)
T cd04595          80 ELMVEHDIGRVPVVED   95 (110)
T ss_pred             HHHHHcCCCeeEEEeC
Confidence            9999999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.44  E-value=1.7e-12  Score=103.93  Aligned_cols=91  Identities=16%  Similarity=0.280  Sum_probs=80.5

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  164 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~  164 (351)
                      ++..++++.++. ++++.|.+.++..+||++++ ++++|+|+.+|++.... ...++.++|...+.++++++++.+++..
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~   79 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL   79 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence            556789999999 89999999999999999875 78999999999986542 2357888888889999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 018757          165 FQKGHSHIAVVYKD  178 (351)
Q Consensus       165 m~~~~~~~apVVDe  178 (351)
                      |.+.+.+.+||+|+
T Consensus        80 ~~~~~~~~~~vv~~   93 (109)
T cd04583          80 VLKRGPKYVPVVDE   93 (109)
T ss_pred             HHHcCCceeeEECC
Confidence            99999999999987

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.2e-12  Score=109.67  Aligned_cols=92  Identities=21%  Similarity=0.349  Sum_probs=79.8

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----C--------------------cc
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----A--------------------VP  140 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~--------------------~~  140 (351)
                      ++.++.+++++. ++++.|.+.+++++||++++ ++++|+++.+|++......    .                    .+
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence            456899999999 99999999999999999875 8899999999998644221    1                    17


Q ss_pred             hhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          141 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       141 V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.++|.++++++.+++++.+++..|.+.+.+.+||+|+
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~  117 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD  117 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC
Confidence            88888888999999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1e-12  Score=106.30  Aligned_cols=92  Identities=18%  Similarity=0.293  Sum_probs=80.0

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc------CCcchhhhhccCCcEecCCCCH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------DAVPLRKMIIRRIPRVSEDMPL  158 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~------~~~~V~dIM~r~v~~V~~~~~L  158 (351)
                      ++.++++++++. ++++.|.+.+++++||++++ ++++|+|+.+|+++....      ...++.++|..++.++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l   79 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI   79 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence            456799999999 89999999999999999875 789999999999864321      2457889988888999999999


Q ss_pred             HHHHHHHHhCCCcEEEEEec
Q 018757          159 YDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       159 ~daL~~m~~~~~~~apVVDe  178 (351)
                      .++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~~~Vv~~   99 (114)
T cd04629          80 VDLAQLMLKAKPKRYPVVDD   99 (114)
T ss_pred             HHHHHHHHHhCCCccCEEEC
Confidence            99999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.43  E-value=7.2e-13  Score=138.70  Aligned_cols=104  Identities=16%  Similarity=0.198  Sum_probs=91.4

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII  146 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~  146 (351)
                      ++.++|+|+|++  ++.++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+.+....    ...++.++|.
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~  519 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH  519 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence            567799999986  567899999999 89999999999999999875 889999999999874321    1357889998


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          147 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       147 r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++++++.++++.|.+++.+.+||+|+
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~  551 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVES  551 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC
Confidence            88999999999999999999999999999987

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.2e-12  Score=108.96  Aligned_cols=92  Identities=17%  Similarity=0.325  Sum_probs=75.3

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc----------ccCCcchhhhhccCCcE--e
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD----------YRDAVPLRKMIIRRIPR--V  152 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~----------~~~~~~V~dIM~r~v~~--V  152 (351)
                      ++.+++.++++. ++++.|.++++..+||++++ ++++|+++.+|++...          .....++.++|.++...  +
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~   79 (126)
T cd04640           2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL   79 (126)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence            356899999999 89999999999999999875 7899999999998521          11235688997655433  3


Q ss_pred             ----cCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          153 ----SEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       153 ----~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                          .+++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~  109 (126)
T cd04640          80 DLEELENASVGDVVETLKASGRQHALVVDR  109 (126)
T ss_pred             cHHHhccCcHHHHHHHHHHCCCceEEEEEC
Confidence                36899999999999999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.43  E-value=1.7e-12  Score=104.79  Aligned_cols=91  Identities=18%  Similarity=0.263  Sum_probs=79.2

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhccCCcEecCCCCHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYD  160 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r~v~~V~~~~~L~d  160 (351)
                      +++.++.+.++. ++++.|.+.++..+||+++  ++++|+++.+|++.....    ...++.++|.+++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04589           2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence            346789999999 8999999999999999986  679999999999865422    135788998888999999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 018757          161 ILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       161 aL~~m~~~~~~~apVVDe  178 (351)
                      +++.|.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04589          79 ALLLMTRHRIHRVVVREG   96 (111)
T ss_pred             HHHHHHHhCccEEEEeeC
Confidence            999999999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.43  E-value=3.7e-13  Score=112.71  Aligned_cols=82  Identities=18%  Similarity=0.329  Sum_probs=70.9

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc----cCCcchhhhhccCCcEecCCCCHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMIIRRIPRVSEDMPLYD  160 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~----~~~~~V~dIM~r~v~~V~~~~~L~d  160 (351)
                      ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++....    ....++.++|.+++.++.+++++.+
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence            567899999999 99999999999999999875 78999999999986322    1256899999999999999999999


Q ss_pred             HHHHHHhC
Q 018757          161 ILNEFQKG  168 (351)
Q Consensus       161 aL~~m~~~  168 (351)
                      ++++|...
T Consensus        81 v~~~~~~~   88 (124)
T cd04608          81 LSRILETD   88 (124)
T ss_pred             HHhhcccC
Confidence            99987643

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.43  E-value=1.9e-12  Score=103.79  Aligned_cols=91  Identities=16%  Similarity=0.248  Sum_probs=78.5

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecC-CCCHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE-DMPLYDILN  163 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~-~~~L~daL~  163 (351)
                      ++.+++.+.++. ++++.|.+++++++||++++ ++++|+++.++++.... ...++.++|...+.++.. ++++.++++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~   79 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE   79 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence            456899999999 89999999999999999875 89999999999975532 346788998666676666 999999999


Q ss_pred             HHHhCCCcEEEEEec
Q 018757          164 EFQKGHSHIAVVYKD  178 (351)
Q Consensus       164 ~m~~~~~~~apVVDe  178 (351)
                      .|.+.+.+.+||+|+
T Consensus        80 ~~~~~~~~~~~Vv~~   94 (110)
T cd04601          80 LLHEHKIEKLPVVDD   94 (110)
T ss_pred             HHHHhCCCeeeEEcC
Confidence            999999999999987

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=2.1e-12  Score=104.07  Aligned_cols=91  Identities=13%  Similarity=0.190  Sum_probs=79.4

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhccCCcEecCCCCHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYD  160 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r~v~~V~~~~~L~d  160 (351)
                      ++.+++.++++. ++.+.|.+.+++++||+++  ++++|+++.+|++.....    ...++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence            467899999999 8999999999999999986  789999999998853211    135788998889999999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 018757          161 ILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       161 aL~~m~~~~~~~apVVDe  178 (351)
                      +++.|.+.+.+.+||+++
T Consensus        79 ~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04800          79 ALLLMLERGIHHLPVVDD   96 (111)
T ss_pred             HHHHHHHcCCCeeeEeEC
Confidence            999999999999999987

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2.1e-12  Score=104.42  Aligned_cols=91  Identities=13%  Similarity=0.230  Sum_probs=79.4

Q ss_pred             eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhccCCcEecCCCCHHHH
Q 018757           86 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYDI  161 (351)
Q Consensus        86 VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r~v~~V~~~~~L~da  161 (351)
                      ...+.+++++. ++++.|.+++++++||++++ ++++|+|+.+|+++....    ...++.++|..++.++++++++.++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA   80 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence            45789999999 89999999999999999875 789999999999864321    1357889888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 018757          162 LNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       162 L~~m~~~~~~~apVVDe  178 (351)
                      ++.|.+.+.+.+||+|+
T Consensus        81 ~~~~~~~~~~~~~Vvd~   97 (113)
T cd04615          81 RWLMSNNNISRLPVLDD   97 (113)
T ss_pred             HHHHHHcCCCeeeEECC
Confidence            99999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.42  E-value=2.5e-12  Score=103.32  Aligned_cols=86  Identities=15%  Similarity=0.222  Sum_probs=76.8

Q ss_pred             EEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHH
Q 018757           87 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ  166 (351)
Q Consensus        87 vtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~  166 (351)
                      .++++++++. ++++.|.+.+++++||+++  ++++|+++.+|++....   .++.++|..++.+++++.++.+++..|.
T Consensus         4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~   77 (104)
T cd04594           4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM   77 (104)
T ss_pred             eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence            3689999999 8999999999999999985  78999999999986532   3577888888899999999999999999


Q ss_pred             hCCCcEEEEEec
Q 018757          167 KGHSHIAVVYKD  178 (351)
Q Consensus       167 ~~~~~~apVVDe  178 (351)
                      +++.+.+||+|+
T Consensus        78 ~~~~~~~~Vv~~   89 (104)
T cd04594          78 KNKTRWCPVVDD   89 (104)
T ss_pred             HcCcceEEEEEC
Confidence            999999999976

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.42  E-value=1.3e-12  Score=109.84  Aligned_cols=92  Identities=14%  Similarity=0.286  Sum_probs=79.9

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc--------------------------cCC
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY--------------------------RDA  138 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~--------------------------~~~  138 (351)
                      ++.++++++++. ++++.|.++++.++||++++ ++++|+|+.+|++....                          ...
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            567899999999 89999999999999999865 88999999999875321                          123


Q ss_pred             cchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++.++|..+++++++++++.+++..|.+.+.+.+||+|+
T Consensus        81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~  120 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG  120 (135)
T ss_pred             CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC
Confidence            5688888788999999999999999999999999999985

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.42  E-value=3.3e-12  Score=102.11  Aligned_cols=89  Identities=17%  Similarity=0.322  Sum_probs=79.0

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  164 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~  164 (351)
                      ++++++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+||+....  ..++.++|..++.++.+++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKDP--DETVEEIMSKDLVVAVPEMDIMDAARV   77 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccCc--cccHHHhCCCCCeEECCCCCHHHHHHH
Confidence            567899999999 8999999889999999985  78999999999986532  346889988888999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 018757          165 FQKGHSHIAVVYKD  178 (351)
Q Consensus       165 m~~~~~~~apVVDe  178 (351)
                      |.+++.+.+||+|+
T Consensus        78 ~~~~~~~~~~Vv~~   91 (107)
T cd04610          78 MFRTGISKLPVVDE   91 (107)
T ss_pred             HHHhCCCeEeEECC
Confidence            99999999999987

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.42  E-value=1.8e-12  Score=104.73  Aligned_cols=86  Identities=17%  Similarity=0.222  Sum_probs=74.8

Q ss_pred             EcCCCCchHHHHHHHHHcC-----CcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHH
Q 018757           89 LDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN  163 (351)
Q Consensus        89 V~~d~tv~~eal~~m~~~~-----~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~  163 (351)
                      +.+++++. ++++.|.+++     +..+||++++ ++++|+|+.+|++...  ...++.++|..++.++.+++++.++++
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~   77 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR   77 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence            57889999 8999998887     4688999865 7899999999998753  245788988778899999999999999


Q ss_pred             HHHhCCCcEEEEEec
Q 018757          164 EFQKGHSHIAVVYKD  178 (351)
Q Consensus       164 ~m~~~~~~~apVVDe  178 (351)
                      .|...+.+.+||+|+
T Consensus        78 ~~~~~~~~~~~Vv~~   92 (109)
T cd04606          78 LFEKYDLLALPVVDE   92 (109)
T ss_pred             HHHHcCCceeeeECC
Confidence            999999999999987

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.41  E-value=2.5e-12  Score=103.53  Aligned_cols=92  Identities=16%  Similarity=0.292  Sum_probs=80.9

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCcEecCCCCHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD  160 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~L~d  160 (351)
                      ++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+++.....    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   79 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED   79 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence            456899999999 89999999999999999875 7899999999998653321    25788998889999999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 018757          161 ILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       161 aL~~m~~~~~~~apVVDe  178 (351)
                      ++..|.+.+.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~Vv~~   97 (114)
T cd04613          80 ALKKFEDSDYEQLPVVDD   97 (114)
T ss_pred             HHHHHhhCCccEeeEEeC
Confidence            999999999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.41  E-value=2.8e-12  Score=104.32  Aligned_cols=91  Identities=15%  Similarity=0.233  Sum_probs=79.5

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--------------CcchhhhhccCCc
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP  150 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--------------~~~V~dIM~r~v~  150 (351)
                      ++.+++.+.++. ++++.|.+.++..+||+++  ++++|+++.+|++......              ..++.++|.++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI   78 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence            456799999999 8999999999999999986  7899999999998654221              2467888888899


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++.+++..|.+.+.+.+||+|+
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~  106 (122)
T cd04585          79 TVSPDASVEEAAELMLERKISGLPVVDD  106 (122)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCceeEECC
Confidence            9999999999999999999999999987

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.41  E-value=2.5e-12  Score=103.80  Aligned_cols=92  Identities=15%  Similarity=0.207  Sum_probs=79.6

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCcEecCCCCHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD  160 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~L~d  160 (351)
                      ++.+++.++++. ++++.+.+.+++++||++++ ++++|+|+.+++++.....    ..++.++|..++.++++++++.+
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   80 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence            455789999999 89999998899999999875 7899999999987654321    24689998888899999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 018757          161 ILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       161 aL~~m~~~~~~~apVVDe  178 (351)
                      +++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~~~~~~Vv~~   98 (114)
T cd04604          81 ALELMEENKITALPVVDD   98 (114)
T ss_pred             HHHHHHHcCCCEEEEECC
Confidence            999999999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.40  E-value=2.9e-12  Score=104.46  Aligned_cols=92  Identities=17%  Similarity=0.255  Sum_probs=77.9

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecC--CCCHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE--DMPLYD  160 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~--~~~L~d  160 (351)
                      .+.++..++++. ++++.|.+.++..+||+++.  .++++|+|+.+|++.... ...++.++|.....++..  ++++.+
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~   80 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE   80 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence            456889999999 89999999999999999862  378999999999875432 235688998777777766  999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 018757          161 ILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       161 aL~~m~~~~~~~apVVDe  178 (351)
                      +++.|.+++.+.+||+|+
T Consensus        81 ~l~~~~~~~~~~~pVv~~   98 (114)
T cd04602          81 ANEILRESKKGKLPIVND   98 (114)
T ss_pred             HHHHHHhcCCCceeEECC
Confidence            999999999999999987

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.40  E-value=2.8e-12  Score=103.55  Aligned_cols=91  Identities=14%  Similarity=0.211  Sum_probs=78.3

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc-cC----CcchhhhhccCCcEecCCCCHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-RD----AVPLRKMIIRRIPRVSEDMPLY  159 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~-~~----~~~V~dIM~r~v~~V~~~~~L~  159 (351)
                      ++.++..++++. ++++.|.+++.+.+||+++  ++++|+|+.+|++.... .+    ..++.++|.+++.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~   78 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL   78 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence            456789999999 8999999999999999985  78999999999874221 11    2578899888889999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 018757          160 DILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       160 daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.|.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~l~Vv~~   97 (113)
T cd04587          79 EALHLMVQGKFRHLPVVDK   97 (113)
T ss_pred             HHHHHHHHcCCCcccEECC
Confidence            9999999999999999987

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.40  E-value=4.5e-12  Score=130.94  Aligned_cols=133  Identities=11%  Similarity=0.145  Sum_probs=103.8

Q ss_pred             CCCCHHHHHHHHHhcccccccCC----CC-CHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757           33 VLLRRAELKTFVNFHGNEAGKGG----DL-THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  107 (351)
Q Consensus        33 ~~~s~eEL~~LI~~~~~es~~~G----~L-~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~  107 (351)
                      ..+++.++-..+...+   + -|    .. .++.+..++.++.+.   ++  |++  +++++++++|+. ++++.|.+++
T Consensus        63 ~~vt~~~lA~Ama~aG---G-iGfI~~~as~E~q~~~Irkvk~~~---~g--mi~--dpvtV~pd~tV~-dA~~lm~~~~  130 (505)
T PLN02274         63 DTVTESDMAIAMAALG---G-IGIVHYNNTAEEQAAIVRKAKSRR---VG--FVS--DPVVKSPSSTIS-SLDELKASRG  130 (505)
T ss_pred             cccchHHHHHHHHhCC---C-eEEEcCCCCHHHHHHHHHHhhccc---cc--ccC--CCeeeCCCCcHH-HHHHHHHhcC
Confidence            3567778876665321   0 11    12 345567888887542   22  653  778999999999 8999999999


Q ss_pred             CcEeeeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhccC--CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          108 HSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       108 ~sriPVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~--v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++.+||++++  .++++|+|+.+|+.... ....+|.++|.++  ++++++++++.++++.|.+++.+.+||+|+
T Consensus       131 ~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~  204 (505)
T PLN02274        131 FSSVCVTETGTMGSKLLGYVTKRDWDFVN-DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE  204 (505)
T ss_pred             CceEEEEeCCCcCCeEEEEEEHHHHhhcc-ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            9999999863  27899999999997543 2356899998766  779999999999999999999999999987

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.3e-12  Score=102.26  Aligned_cols=79  Identities=8%  Similarity=0.185  Sum_probs=71.4

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  164 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~  164 (351)
                      ++.++.+++++. ++++.|.+.+++.+||++++ ++++|+++.+|++...             .+.++.+++++.+++..
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~   66 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK   66 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence            467899999999 89999999999999999865 8899999999998642             17889999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 018757          165 FQKGHSHIAVVYKD  178 (351)
Q Consensus       165 m~~~~~~~apVVDe  178 (351)
                      |.+++.+.+||+|+
T Consensus        67 m~~~~~~~lpVv~~   80 (96)
T cd04614          67 MKRNRIEQIPIING   80 (96)
T ss_pred             HHHhCCCeeeEECC
Confidence            99999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=4.1e-12  Score=103.25  Aligned_cols=91  Identities=14%  Similarity=0.327  Sum_probs=76.1

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcC-CcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCcEecCC--CC
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSED--MP  157 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~-~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~--~~  157 (351)
                      ++.+++.+.++. ++++.|.+++ +..+||+++  ++++|+|+.+|+++.....    ..++.++|.++++++.++  ++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~   78 (115)
T cd04620           2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD   78 (115)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence            345789999999 8999998888 677787763  7899999999998643221    357889988888889887  78


Q ss_pred             HHHHHHHHHhCCCcEEEEEec
Q 018757          158 LYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       158 L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.+++..|.+++.+.+||+|+
T Consensus        79 l~~a~~~~~~~~~~~~pVvd~   99 (115)
T cd04620          79 IFTALSLFRQHQIRHLPVLDD   99 (115)
T ss_pred             HHHHHHHHHHhCCceEEEEcC
Confidence            999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=3.5e-12  Score=104.73  Aligned_cols=91  Identities=13%  Similarity=0.180  Sum_probs=79.1

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--------------CCcchhhhhccCCc
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP  150 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--------------~~~~V~dIM~r~v~  150 (351)
                      ++.++++++++. ++++.|.+.+++++||+++  ++++|+++.+|+++....              ...++.++|.++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI   78 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence            467899999999 8999999999999999985  789999999999764321              12467888888899


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++.+++..|.+++...+||+|+
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~~  106 (122)
T cd04637          79 TVSPDTPVDEASKLLLENSISCLPVVDE  106 (122)
T ss_pred             eeCCCCcHHHHHHHHHHcCCCeEeEECC
Confidence            9999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=8.6e-12  Score=100.05  Aligned_cols=90  Identities=23%  Similarity=0.268  Sum_probs=79.4

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE  164 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~  164 (351)
                      +++++..++++. ++++.|.+.+++++||++++ ++++|+++.++++....  ..++.++|..++.++++++++.+++..
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL   77 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence            467899999999 89999999999999999876 88999999999986432  246788888888999999999999999


Q ss_pred             HHhCCCcEEEEEec
Q 018757          165 FQKGHSHIAVVYKD  178 (351)
Q Consensus       165 m~~~~~~~apVVDe  178 (351)
                      |.+.+.+.+||+|+
T Consensus        78 ~~~~~~~~~~Vvd~   91 (106)
T cd04638          78 MVENNIRRVPVVDD   91 (106)
T ss_pred             HHHcCCCEEEEEEC
Confidence            99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=6.2e-12  Score=101.52  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=79.0

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc-----cCCcchhhhhccCCcEecCCCCHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-----RDAVPLRKMIIRRIPRVSEDMPLY  159 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~-----~~~~~V~dIM~r~v~~V~~~~~L~  159 (351)
                      ++.++++++++. ++++.|.+.+++.+||+++  ++++|+++.+|++....     ....++.++|.+++.++++++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   78 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN   78 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence            456789999999 8999999999999999986  48999999999986431     123578899878888999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 018757          160 DILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       160 daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.|.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~~~Vv~~   97 (112)
T cd04802          79 EAAKLMAKHGIKRLPVVDD   97 (112)
T ss_pred             HHHHHHHHcCCCeeEEeeC
Confidence            9999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=7.2e-12  Score=101.13  Aligned_cols=91  Identities=11%  Similarity=0.189  Sum_probs=77.5

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcchhhhhccCCcEecCCCCHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY  159 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V~dIM~r~v~~V~~~~~L~  159 (351)
                      ++.++++++++. ++++.|.++++..++|.+ + ++++|+++.+|+++....     ...++.++|..++.++.+++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   78 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID   78 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence            567899999999 899999888888887775 3 789999999999865321     13578899877788999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 018757          160 DILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       160 daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.|.+++...+||+|+
T Consensus        79 ~a~~~m~~~~~~~l~Vv~~   97 (112)
T cd04625          79 EVRRLMVERHLRYLPVLDG   97 (112)
T ss_pred             HHHHHHHHcCCCeeeEEEC
Confidence            9999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.37  E-value=3.4e-12  Score=129.56  Aligned_cols=101  Identities=20%  Similarity=0.369  Sum_probs=85.3

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII  146 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~  146 (351)
                      |..++|+++|.+  ++.++.+++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++....    ...++.++|.
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~  407 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS  407 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence            788999999975  678999999999 89999999999999999875 789999999999874322    1347899988


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          147 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       147 r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++|++++++.+++..|.+++  .+ ||++
T Consensus       408 ~~~~~v~~~~~l~~a~~~~~~~~--~~-vV~~  436 (454)
T TIGR01137       408 KKFIQIGEGEKLSDLSKFLEKNS--SA-IVTE  436 (454)
T ss_pred             CCCeEECCcCcHHHHHHHHHHCC--ee-EEEE
Confidence            88889999999999999998864  34 4444

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.37  E-value=4.6e-12  Score=102.90  Aligned_cols=87  Identities=21%  Similarity=0.182  Sum_probs=76.3

Q ss_pred             cceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHH
Q 018757           84 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDI  161 (351)
Q Consensus        84 ~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~da  161 (351)
                      .++..+++++++. ++.+.+.+.++.++||+++.  .++++|+|+.+|+......       +|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~   73 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV   73 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence            3567899999999 89999999999999999862  3789999999999865432       677888999999999999


Q ss_pred             HHHHHhCCCcEEEEEec
Q 018757          162 LNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       162 L~~m~~~~~~~apVVDe  178 (351)
                      +..|.+++.+.+||+++
T Consensus        74 ~~~~~~~~~~~~pVv~~   90 (105)
T cd04591          74 HQLFRKLGLRHLLVVDE   90 (105)
T ss_pred             HHHHHHcCCCEEEEEEC
Confidence            99999999999999965

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.37  E-value=3.1e-12  Score=131.92  Aligned_cols=112  Identities=14%  Similarity=0.197  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC--CCcEEEEEEhhhhhccccc
Q 018757           59 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR  136 (351)
Q Consensus        59 ~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~--~~~IVGIVt~kDLl~~~~~  136 (351)
                      +++++++..+.++.   .+.++.|    .++++++|+. ++++.|.+++++.+||++++  .++++|+|+.+||......
T Consensus        87 e~qa~lV~kVk~~~---~g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~  158 (502)
T PRK07107         87 ESEAAMVRRVKNYK---AGFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS  158 (502)
T ss_pred             HHHHHHHHHHHHHh---cCCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence            56666666665433   2222322    4899999999 99999999999999999862  3789999999999754322


Q ss_pred             CCcchhhhhcc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          137 DAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       137 ~~~~V~dIM~r--~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .+.+|.++|..  +++++++++++.+|++.|.++++..+||+|+
T Consensus       159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~  202 (502)
T PRK07107        159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK  202 (502)
T ss_pred             CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            35689999875  7788999999999999999999999999987

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1e-11  Score=100.25  Aligned_cols=91  Identities=13%  Similarity=0.247  Sum_probs=78.1

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc-ccc----CCcchhhhhccCCcEecCCCCHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV-DYR----DAVPLRKMIIRRIPRVSEDMPLY  159 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~-~~~----~~~~V~dIM~r~v~~V~~~~~L~  159 (351)
                      ++.++++++++. ++++.|.+.+++.+||+++  ++++|+++.+|++.. ...    ...++.++|.+.+.++.+++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD   78 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence            456899999999 9999999999999999986  889999999998732 111    12348899888899999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 018757          160 DILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       160 daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.|...+.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~~~V~~~   97 (113)
T cd04622          79 EAARLMREHQVRRLPVVDD   97 (113)
T ss_pred             HHHHHHHHcCCCeeeEECC
Confidence            9999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.37  E-value=8e-12  Score=102.04  Aligned_cols=92  Identities=11%  Similarity=0.193  Sum_probs=79.8

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc-------------cCCcchhhhhccCCcE
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR  151 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~-------------~~~~~V~dIM~r~v~~  151 (351)
                      ++.+++.++++. ++++.|.+.+++++||++++ ++++|+|+.+|++....             ....++.++|..++.+
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT   79 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence            456899999999 89999999999999999875 89999999999875431             1135688888888999


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          152 VSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       152 V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++++.++++.|.+++.+.+||+|+
T Consensus        80 i~~~~~l~~~~~~~~~~~~~~~~V~~~  106 (121)
T cd04584          80 VHPLDTVEEAALLMREHRIGCLPVVED  106 (121)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence            999999999999999999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=6.2e-12  Score=102.88  Aligned_cols=91  Identities=15%  Similarity=0.304  Sum_probs=79.2

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--------------CCcchhhhhccCCc
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP  150 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--------------~~~~V~dIM~r~v~  150 (351)
                      +++++++++++. ++++.|.+.+++++||+++  ++++|+++..|++.....              ...++.++|..++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI   78 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence            456899999999 8999999999999999985  789999999999764321              13468888888899


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++.+++..|.+.+.+.+||+|+
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~  106 (121)
T cd04633          79 TIEPDTSVSDVASLMLENNIGGLPVVDD  106 (121)
T ss_pred             EECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence            9999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.35  E-value=8.3e-12  Score=128.73  Aligned_cols=133  Identities=10%  Similarity=0.202  Sum_probs=103.6

Q ss_pred             CCCCHHHHHHHHHhcccccccCCCC----C-HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757           33 VLLRRAELKTFVNFHGNEAGKGGDL----T-HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  107 (351)
Q Consensus        33 ~~~s~eEL~~LI~~~~~es~~~G~L----~-~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~  107 (351)
                      ..+++.++-.-+..+    +.-|.|    + +++.+++..+..+     ++.|.+  +++++++++++. +++++|.+++
T Consensus        59 ~~vt~~~ma~a~a~~----GglGvi~~~~~~e~~~~~v~kvk~~-----e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~  126 (495)
T PTZ00314         59 DTVTEHKMAIAMALM----GGIGVIHNNCSIEEQVEEVRKVKRF-----ENGFIM--DPYVLSPNHTVA-DVLEIKEKKG  126 (495)
T ss_pred             cccccHHHHHHHHHC----CCeEEecCCCCHHHHHHHHhhcccc-----cccccc--CCeecCCCCCHH-HHHHHHHHcC
Confidence            456777777665532    222322    2 3456677777554     446654  667999999999 9999999999


Q ss_pred             CcEeeeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhcc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          108 HSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       108 ~sriPVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r--~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++.+||++++  .++++|+|+.+|+..... ...+|.++|.+  +++++++++++.+++++|.+++.+.+||+|+
T Consensus       127 ~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~-~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~  200 (495)
T PTZ00314        127 FSSILITVDGKVGGKLLGIVTSRDIDFVKD-KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND  200 (495)
T ss_pred             CcEEEEEeCCccCCeEEEEEEHHHHhhccc-CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC
Confidence            9999999863  368999999999975432 35689999876  7899999999999999999999999999998

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.35  E-value=1.1e-11  Score=99.21  Aligned_cols=89  Identities=22%  Similarity=0.437  Sum_probs=74.9

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCcEecCCCCHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD  160 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~L~d  160 (351)
                      ++.+++.++++. ++++.|.+++++++||+++  ++++|+++.+|+++.....    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   78 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE   78 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence            356789999999 8999999999999999986  7899999999998764322    25688888888899999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 018757          161 ILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       161 aL~~m~~~~~~~apVVDe  178 (351)
                      ++..|.+ .. .+||+++
T Consensus        79 ~~~~~~~-~~-~~~vv~~   94 (110)
T cd04609          79 LSELLDR-GN-VAVVVDE   94 (110)
T ss_pred             HHHHHHh-CC-ceeEEec
Confidence            9999988 33 4688877

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.34  E-value=1.1e-11  Score=127.02  Aligned_cols=101  Identities=16%  Similarity=0.236  Sum_probs=89.2

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP  150 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~  150 (351)
                      +..+++.++|+.  +++++.+++++. ++++.|.+++++.+||+++  ++++|+|+.+||.....  ..++.++|..+++
T Consensus        85 v~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~li  157 (475)
T TIGR01303        85 VAFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLV  157 (475)
T ss_pred             Hhhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCce
Confidence            346678889975  668999999999 9999999999999999875  57999999999975532  3579999999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++.+++.+|.+++.+.+||+|+
T Consensus       158 tv~~~~sL~eAl~lM~~~~i~~LPVVD~  185 (475)
T TIGR01303       158 TAPADTEPRKAFDLLEHAPRDVAPLVDA  185 (475)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            9999999999999999999999999987

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.4e-11  Score=96.00  Aligned_cols=92  Identities=20%  Similarity=0.309  Sum_probs=79.4

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-C---cchhhhhccCCcEecCCCCHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-A---VPLRKMIIRRIPRVSEDMPLYD  160 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-~---~~V~dIM~r~v~~V~~~~~L~d  160 (351)
                      ++.+++.+.++. ++++.|.+.++.++||++++ ++++|+++.+|++...... .   ..+.++|..++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE   79 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence            456789999999 89999999999999999875 7899999999998755332 1   1156788888999999999999


Q ss_pred             HHHHHHhCCCcEEEEEec
Q 018757          161 ILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       161 aL~~m~~~~~~~apVVDe  178 (351)
                      ++..|.+.+.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~V~~~   97 (113)
T cd02205          80 AAELMLEHGIRRLPVVDD   97 (113)
T ss_pred             HHHHHHHcCCCEEEEEcC
Confidence            999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.32  E-value=2.3e-11  Score=98.53  Aligned_cols=97  Identities=24%  Similarity=0.380  Sum_probs=84.7

Q ss_pred             ccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC-c--chhhhhccCCcEec
Q 018757           77 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-V--PLRKMIIRRIPRVS  153 (351)
Q Consensus        77 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~-~--~V~dIM~r~v~~V~  153 (351)
                      .++|.  ..++++.++.++. ++...|.+++++++||.+.  ++++|+++.+|++++..... .  ++.++|.++++++.
T Consensus         2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~   76 (117)
T COG0517           2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD   76 (117)
T ss_pred             ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence            34554  4778999999999 9999999999999999975  36999999999998765432 2  48899888999999


Q ss_pred             CCCCHHHHHHHHHh-CCCcEEEEEec
Q 018757          154 EDMPLYDILNEFQK-GHSHIAVVYKD  178 (351)
Q Consensus       154 ~~~~L~daL~~m~~-~~~~~apVVDe  178 (351)
                      ++.++.++++.|.+ ++.+.+||+|+
T Consensus        77 ~~~~~~~~~~~m~~~~~~~~lpVv~~  102 (117)
T COG0517          77 PDTPLEEALELMVERHKIRRLPVVDD  102 (117)
T ss_pred             CCCCHHHHHHHHHHHcCcCeEEEEEC
Confidence            99999999999999 79999999998

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.30  E-value=9.9e-12  Score=117.27  Aligned_cols=102  Identities=16%  Similarity=0.132  Sum_probs=90.0

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---CCcchhhhhccCCc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIP  150 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---~~~~V~dIM~r~v~  150 (351)
                      ++|+++|.+. ++.++++++++. ++++.|.+.+++.+||++++ ++++|+|+.+|+++....   ...++.++|.++++
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            6899999863 277899999999 89999999999999999875 889999999999875322   24679999988999


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++.+++++.++++.|.+++.+.+||+|+
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~  259 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDD  259 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence            9999999999999999999999999987

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=2.3e-11  Score=103.95  Aligned_cols=91  Identities=16%  Similarity=0.308  Sum_probs=78.8

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----------------------------
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------------------------  136 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----------------------------  136 (351)
                      ++++++.++++. ++++.|.+.+++.+||+++  ++++|+++.+|++.....                            
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            467899999999 8999999999999999985  789999999998754311                            


Q ss_pred             --------CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          137 --------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       137 --------~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                              ...++.++|.+++.++++++++.+++..|.+.+.+.+||+++
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~  128 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED  128 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence                    124577888888999999999999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.29  E-value=2.7e-11  Score=98.75  Aligned_cols=91  Identities=19%  Similarity=0.204  Sum_probs=75.2

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcC-CcEeeeeeCCCCcEEEEEEhhhhhccccc-------CCcchhhhhccCCcEecCCC
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR-------DAVPLRKMIIRRIPRVSEDM  156 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~-~sriPVvd~~~~~IVGIVt~kDLl~~~~~-------~~~~V~dIM~r~v~~V~~~~  156 (351)
                      ++.++++++++. ++++.|...+ ++.+||+++  ++++|+|+.+|++.....       ...++.++|..++.++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   78 (119)
T cd04598           2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT   78 (119)
T ss_pred             CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence            345789999999 8999998887 899999986  889999999999854321       24578999888889999999


Q ss_pred             CHHHHHHHHHhCCCc---EEEEEec
Q 018757          157 PLYDILNEFQKGHSH---IAVVYKD  178 (351)
Q Consensus       157 ~L~daL~~m~~~~~~---~apVVDe  178 (351)
                      ++.+++..|.+++..   .++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vv~~  103 (119)
T cd04598          79 PLEEVSRLATGRDSQNLYDGFIVTE  103 (119)
T ss_pred             CHHHHHHHHHcCCcccccccEEEee
Confidence            999999999988753   3467776

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.23  E-value=2.6e-11  Score=123.90  Aligned_cols=104  Identities=14%  Similarity=0.182  Sum_probs=91.8

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII  146 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~  146 (351)
                      |--.+|+++|+.  ..+++++.+++. +|.+.|.+.|.+.+.|++++ +...|||+.+|+......    ...+|+++|+
T Consensus       146 ~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT  221 (610)
T COG2905         146 FILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT  221 (610)
T ss_pred             HHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence            334568999985  567999999999 99999999999999999876 889999999999875432    2578999999


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          147 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       147 r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .|+++|..++.+.+|+-.|.+++++++||.++
T Consensus       222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~e~  253 (610)
T COG2905         222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVTED  253 (610)
T ss_pred             cCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence            99999999999999999999999999999987

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.05  E-value=7.6e-10  Score=94.58  Aligned_cols=92  Identities=15%  Similarity=0.149  Sum_probs=77.6

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC---c------------chhhhh----
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---V------------PLRKMI----  145 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~---~------------~V~dIM----  145 (351)
                      ++.++.+++++. ++++.|.+++++.+||++++ ++++|+|+.+||+++.....   .            .+.++|    
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            567899999999 99999999999999999875 88999999999987543211   0            133454    


Q ss_pred             -----ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          146 -----IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       146 -----~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                           ..+++++.+++++.+|++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence                 367889999999999999999999999999997

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.05  E-value=1.7e-09  Score=112.68  Aligned_cols=56  Identities=18%  Similarity=0.336  Sum_probs=50.7

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..+|+++|++  ++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+.+
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~  122 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLAR  122 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHH
Confidence            3689999985  778999999999 99999999999999999875 89999999999864

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.82  E-value=1.6e-08  Score=73.01  Aligned_cols=38  Identities=18%  Similarity=0.129  Sum_probs=36.1

Q ss_pred             hhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          141 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       141 V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      |+++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~   38 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE   38 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec
Confidence            46889999999999999999999999999999999988

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.73  E-value=1.6e-08  Score=73.06  Aligned_cols=55  Identities=29%  Similarity=0.496  Sum_probs=50.7

Q ss_pred             cccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           76 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        76 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      |+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+++.
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhh
Confidence            5789986  889999999999 99999999999999999876 8999999999998754

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=3.2e-07  Score=92.61  Aligned_cols=101  Identities=14%  Similarity=0.129  Sum_probs=80.8

Q ss_pred             cccccccccCcc-eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEe
Q 018757           74 KTAKDAMTPISK-AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV  152 (351)
Q Consensus        74 ~tV~dIMtPr~~-VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V  152 (351)
                      .++.++|.+... .+...++.+.. +++..|...+.+++.|++++ ++++|+|+.+++...... ...+.+.+.....+|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  350 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV  350 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence            567888853221 12344666787 89999999999999999876 899999999999765433 346777777778899


Q ss_pred             cCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          153 SEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       153 ~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++.+++..|.+.... +||+|+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~-~~v~~~  375 (400)
T PRK10070        351 DAQTPLSELLSHVGQAPCA-VPVVDE  375 (400)
T ss_pred             CCCCCHHHHHHHHHhCCCc-EEEECC
Confidence            9999999999999998777 889987

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.64  E-value=2e-07  Score=93.45  Aligned_cols=92  Identities=13%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----Ccc-hhhh------hccCCcEe
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVP-LRKM------IIRRIPRV  152 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~-V~dI------M~r~v~~V  152 (351)
                      .+..+..+.++. ++++.|...+++.+||++.. ++.+|+++..|+.......     ... ++..      -..+++++
T Consensus       238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc  315 (381)
T KOG1764|consen  238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC  315 (381)
T ss_pred             hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence            588999999999 99999999999999999986 7789999999987654332     112 3222      12356889


Q ss_pred             cCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          153 SEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       153 ~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++.++..++..|..+++|.+.|||+
T Consensus       316 ~~~ssL~~vi~~lv~~~vHRl~VVd~  341 (381)
T KOG1764|consen  316 RPTSTLAEVIDKLVAHRVHRLWVVDE  341 (381)
T ss_pred             eecchHHHHHHHHHhcCceEEEEEcC
Confidence            99999999999999999999999998

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.52  E-value=1.6e-06  Score=86.53  Aligned_cols=88  Identities=15%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             EEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHH
Q 018757           87 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ  166 (351)
Q Consensus        87 vtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~  166 (351)
                      ....++.+.. ++++.|...+...+.|++++ +++.|+|+.+++..+... ...+.+.|...+.+|++++++.+++..|.
T Consensus       253 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (363)
T TIGR01186       253 ITKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK-AQGLQDVLIDDIYTVDAGTLLRETVRKVL  329 (363)
T ss_pred             eeecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc-CCchhhhhccCCceECCCCcHHHHHHHHH
Confidence            3456677888 89999999999999999876 789999999998865443 24577777778889999999999999999


Q ss_pred             hCCCcEEEEEec
Q 018757          167 KGHSHIAVVYKD  178 (351)
Q Consensus       167 ~~~~~~apVVDe  178 (351)
                      +.+.. +||+|+
T Consensus       330 ~~~~~-~~v~~~  340 (363)
T TIGR01186       330 KAGIK-VPVVDE  340 (363)
T ss_pred             hCCCC-EEEECC
Confidence            99999 999987

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.46  E-value=4.8e-07  Score=89.95  Aligned_cols=137  Identities=11%  Similarity=0.135  Sum_probs=105.1

Q ss_pred             CCCCHHHHHHHHHhccccccc-CCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEe
Q 018757           33 VLLRRAELKTFVNFHGNEAGK-GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRV  111 (351)
Q Consensus        33 ~~~s~eEL~~LI~~~~~es~~-~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sri  111 (351)
                      +.+++.|.-....+++-=+-= ..-=.++++.++.++-.|..   +-++    +.+.+.++.++. ++++.-..++|+.+
T Consensus        71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~---g~~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~  142 (503)
T KOG2550|consen   71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYEN---GFIN----NPIVISPTTTVG-EVKEAKEKHGFSGI  142 (503)
T ss_pred             cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhc---cccc----CCcccCCcccch-hhhhhccccccccc
Confidence            467777776655543100000 01125678899999987774   3333    446799999999 89999999999999


Q ss_pred             eeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          112 PVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       112 PVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ||.++.  ..+++|+|+.+|+-.. ....+.+.++|+...++.+...++.++-+.+++.+..-+||||+
T Consensus       143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~  210 (503)
T KOG2550|consen  143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD  210 (503)
T ss_pred             ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc
Confidence            999743  2579999999998655 34467899999888899999999999999999999999999998

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.32  E-value=7e-07  Score=92.68  Aligned_cols=105  Identities=21%  Similarity=0.249  Sum_probs=85.0

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCC----CcEEEEEEhhhhhcccccC---------
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP----TNIIGLILVKNLLSVDYRD---------  137 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~----~~IVGIVt~kDLl~~~~~~---------  137 (351)
                      +++++|+|+|.+  ++++++.-..+. .+.+.++.+.|..|||+|+..    +++.|+|....++......         
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            567889999986  899999999999 899999999999999998543    3688998888875321100         


Q ss_pred             ---------------------------------CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 ---------------------------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ---------------------------------~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                                       -.++..+|...+++|++++++..++.+|++-+++++.|++.
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~  729 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK  729 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC
Confidence                                             01234455566789999999999999999999999999987

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.10  E-value=2.4e-06  Score=87.40  Aligned_cols=99  Identities=14%  Similarity=0.173  Sum_probs=82.7

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcE
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR  151 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~  151 (351)
                      .+.+++++|++  +++++++++++. ++++.|.++++..+||+|++ |+++|+|+.+|++....+.  ...++|....++
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~  266 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK  266 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence            56689999986  678899999999 99999999999999999875 8899999999999876543  346776655555


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEE
Q 018757          152 VSEDMPLYDILNEFQKGHSHIAVVY  176 (351)
Q Consensus       152 V~~~~~L~daL~~m~~~~~~~apVV  176 (351)
                      ..++..+.+++..|.+++...++|.
T Consensus       267 ~~~~~~l~~~~~~~~~~R~~wL~v~  291 (449)
T TIGR00400       267 PLDDSYFDTSILVMAKNRIIWLLVL  291 (449)
T ss_pred             CCcchhhhchHHHHHHhccchHHHH
Confidence            5567788999999999999888775

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.01  E-value=1.1e-05  Score=65.34  Aligned_cols=56  Identities=18%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +.++.++|..  .+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus        55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            3468999974  567899999999 89999999999999999875 78999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.97  E-value=1.9e-05  Score=63.31  Aligned_cols=60  Identities=23%  Similarity=0.378  Sum_probs=51.9

Q ss_pred             hcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           69 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        69 l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..+...++.++|.+  .+.++++++++. ++++.|.+++...+||++++ ++++|+|+.+||++
T Consensus        54 ~~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          54 LDILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             CccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            34455679999976  567899999999 99999999999999999865 88999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.95  E-value=2.1e-05  Score=64.74  Aligned_cols=55  Identities=18%  Similarity=0.311  Sum_probs=49.5

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+|+++|.+  ++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+||..
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            679999975  677899999999 89999999999999999875 78999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.89  E-value=2e-05  Score=74.48  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=38.8

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.+|+++|.++++++.+++++.++...|.+++++-+||+|+
T Consensus       171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~  211 (294)
T COG2524         171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD  211 (294)
T ss_pred             cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC
Confidence            35789999999999999999999999999999999999998

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.87  E-value=2.4e-05  Score=63.14  Aligned_cols=58  Identities=26%  Similarity=0.409  Sum_probs=50.7

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +.++.++|.+...+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence            467899998644567899999999 99999999999999999874 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.83  E-value=7.7e-05  Score=77.51  Aligned_cols=101  Identities=17%  Similarity=0.230  Sum_probs=72.1

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCC-
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI-  149 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v-  149 (351)
                      ..+.+|+++|++..+++++++++++. +++++|.++++..+||+|++ ++++|+|+.+|+++..... ....+-.-+-. 
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P-~a~~d~~grL~V  234 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENP-LELLDSSKRYVV  234 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccCh-hhhhhhccCeee
Confidence            45678999999766889999999999 99999999999999999875 7899999999999764221 11112101111 


Q ss_pred             -cEecCCCCHHHHHHHHHhCCCcEEEE
Q 018757          150 -PRVSEDMPLYDILNEFQKGHSHIAVV  175 (351)
Q Consensus       150 -~~V~~~~~L~daL~~m~~~~~~~apV  175 (351)
                       ..+... ...+-+..+.+.++..+.|
T Consensus       235 ~~av~~~-~~~~ra~~Lv~aGvd~i~v  260 (502)
T PRK07107        235 GAGINTR-DYAERVPALVEAGADVLCI  260 (502)
T ss_pred             eeccChh-hHHHHHHHHHHhCCCeEee
Confidence             112222 3456666777788887654

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.83  E-value=3.7e-05  Score=62.79  Aligned_cols=61  Identities=15%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCC--CcEEEEEEhhhhhc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--TNIIGLILVKNLLS  132 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~--~~IVGIVt~kDLl~  132 (351)
                      +...++.++|+...++.++++++++. ++++.|.++++..+||++++.  ++++|+|+..|+++
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            34667889997323678999999999 899999999999999998752  58999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.81  E-value=3.6e-05  Score=62.49  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=50.4

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.++.++|..  ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus        57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            34678999964  677899999999 99999999999999999875 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.81  E-value=5.3e-05  Score=62.37  Aligned_cols=40  Identities=23%  Similarity=0.266  Sum_probs=37.3

Q ss_pred             cchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++.++|.+++.++++++++.++++.|.+.+...+||+|+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~   97 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD   97 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC
Confidence            5688998889999999999999999999999999999987

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.76  E-value=3.5e-05  Score=80.53  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=79.7

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--------------
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------  137 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--------------  137 (351)
                      ...+|+++|+. .++.++++++++. ++.+.|.++++..+||++++ ++++|+|+.+|++......              
T Consensus       244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~  320 (546)
T PRK14869        244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE  320 (546)
T ss_pred             cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence            36789999982 3788999999999 99999999999999999976 8999999999998643210              


Q ss_pred             ------------CcchhhhhccCCcEe---cCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 ------------AVPLRKMIIRRIPRV---SEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ------------~~~V~dIM~r~v~~V---~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                  ..++.++|.+.++.+   +...+...+.++|.+.++...|++..
T Consensus       321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~  376 (546)
T PRK14869        321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG  376 (546)
T ss_pred             chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH
Confidence                        113445655555444   34566677888899998887777653

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.76  E-value=6.1e-05  Score=60.70  Aligned_cols=56  Identities=14%  Similarity=0.354  Sum_probs=49.4

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +.++.++|.+  .+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence            3568899964  577899999999 89999999999999999865 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.74  E-value=6.9e-05  Score=60.44  Aligned_cols=57  Identities=16%  Similarity=0.289  Sum_probs=48.9

Q ss_pred             cccccccccccCcceEEEcCC--CCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLD--ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d--~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.++.++|.+  .+.++.++  +++. ++++.|.+++...+||++++ ++++|+|+.+|+++
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          56 SDLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             cccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            34678999964  56778877  6888 89999999999999999875 88999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.71  E-value=7.1e-05  Score=60.01  Aligned_cols=46  Identities=15%  Similarity=0.226  Sum_probs=42.1

Q ss_pred             eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           86 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        86 VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +.++.+++++. ++++.|.+++..++||++++.++++|+|+.+|++.
T Consensus        52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            67899999999 99999999999999999864478999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.69  E-value=7.1e-05  Score=60.38  Aligned_cols=58  Identities=21%  Similarity=0.391  Sum_probs=51.3

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +...++.++|.+  .+.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~  121 (122)
T cd04585          64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR  121 (122)
T ss_pred             hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence            345678999975  678999999999 99999999999999999864 78999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.69  E-value=7.5e-05  Score=60.95  Aligned_cols=59  Identities=20%  Similarity=0.445  Sum_probs=51.7

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      ....+++++|.+  .+.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|++.+
T Consensus        66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~~  124 (124)
T cd04600          66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIAA  124 (124)
T ss_pred             cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhcC
Confidence            356679999974  678999999999 89999999999999999864 889999999999853

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.69  E-value=0.00024  Score=71.53  Aligned_cols=121  Identities=15%  Similarity=0.227  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHhhcCccccccc--ccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           57 LTHDETTIIAGALELTEKTAKD--AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        57 L~~~E~~mI~~~l~l~d~tV~d--IMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      +..+..+.+....-.....+..  -++.+...+.+.+..++- ++...+.++++.++||.|...++++.+++.+-++...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l  211 (381)
T KOG1764|consen  133 SSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFL  211 (381)
T ss_pred             CcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHH
Confidence            3445555555544444444422  234444547899999998 8999999999999999995568999999999998764


Q ss_pred             ccC----------Ccchhhh---hccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          135 YRD----------AVPLRKM---IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       135 ~~~----------~~~V~dI---M~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ...          ..++.++   +...+..+.+++++.+|++.|...++.-+||||.
T Consensus       212 ~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~  268 (381)
T KOG1764|consen  212 WLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDE  268 (381)
T ss_pred             HHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence            322          1222222   1235788999999999999999999999999998

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.65  E-value=8.7e-05  Score=59.43  Aligned_cols=55  Identities=20%  Similarity=0.361  Sum_probs=49.1

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .++.++|.+  .+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence            678999964  567899999999 89999999999999999875 78999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.64  E-value=9.8e-05  Score=59.68  Aligned_cols=57  Identities=18%  Similarity=0.280  Sum_probs=50.1

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      .+.++.++|..  ++.++++++++. ++++.|.+++...+||+++  ++++|+|+..|++.+
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~~  114 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFLA  114 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhcC
Confidence            45678999963  678999999999 9999999999999999985  789999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.63  E-value=0.00016  Score=57.31  Aligned_cols=54  Identities=15%  Similarity=0.278  Sum_probs=47.8

Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ++.++|.+  .+.++.+++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            57899975  456799999999 89999999999999999875 78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.62  E-value=0.00012  Score=58.09  Aligned_cols=56  Identities=20%  Similarity=0.418  Sum_probs=49.3

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +..++++|.+  .+.++.+++++. ++++.|.+++..++||++++ |+++|+++.+|+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            3568999965  567899999999 89999999999999999875 78999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.60  E-value=7.1e-05  Score=61.94  Aligned_cols=60  Identities=25%  Similarity=0.364  Sum_probs=47.8

Q ss_pred             cccccccccccCcceEEEc----CCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLD----LDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~----~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.+++++|++...++.++    +++++. ++++.|.+++...+||++++.++++|+|+..|+++
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            4567999997533333443    688998 89999999999999999864358999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.60  E-value=0.00018  Score=74.42  Aligned_cols=96  Identities=9%  Similarity=0.184  Sum_probs=72.3

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhh----hhccCC
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRK----MIIRRI  149 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~d----IM~r~v  149 (351)
                      ..|.++|++  ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+||++.....  ++.+    .+....
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa  221 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA  221 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence            569999985  788999999999 99999999999999999875 7899999999999764332  2211    111222


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+  .....+.+..|.+.+... +|+|-
T Consensus       222 v~~--~~~~~~~a~~Lv~aGvd~-i~~D~  247 (479)
T PRK07807        222 VGI--NGDVAAKARALLEAGVDV-LVVDT  247 (479)
T ss_pred             hcc--ChhHHHHHHHHHHhCCCE-EEEec
Confidence            222  334778888888888887 56664

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.60  E-value=0.00012  Score=58.53  Aligned_cols=57  Identities=18%  Similarity=0.391  Sum_probs=50.5

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.++.++|.+  .+.++++++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            35679999975  677899999999 99999999999999999865 78999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.60  E-value=6.9e-05  Score=72.27  Aligned_cols=41  Identities=15%  Similarity=0.173  Sum_probs=39.0

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+..+||.+++++++++++++++.++|++++++.+||+|+
T Consensus       244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~  284 (382)
T COG3448         244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE  284 (382)
T ss_pred             cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc
Confidence            45778999999999999999999999999999999999998

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.60  E-value=0.00012  Score=58.58  Aligned_cols=55  Identities=16%  Similarity=0.377  Sum_probs=48.8

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +.++.++|..  .+.++++++++. ++++.|.+++..++||+++  ++++|+|+.+|+++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            4679999964  577899999999 8999999999999999983  78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.59  E-value=0.00012  Score=58.34  Aligned_cols=57  Identities=25%  Similarity=0.389  Sum_probs=50.0

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..++.++|.+  .+.++++++++. ++++.|.+.+...+||++++.++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            4789999975  578899999999 89999999999999999861378999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.58  E-value=0.00015  Score=59.58  Aligned_cols=52  Identities=29%  Similarity=0.334  Sum_probs=45.5

Q ss_pred             cccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhh
Q 018757           76 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL  131 (351)
Q Consensus        76 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl  131 (351)
                      +.++|.+  ++.+++++.++. ++++.|.+++.+++||++++ ++++|+|+..|+.
T Consensus        70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            3457754  678999999999 89999999999999999875 7899999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.58  E-value=0.00014  Score=57.87  Aligned_cols=55  Identities=15%  Similarity=0.421  Sum_probs=49.3

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..+++++|.+  .+.++++++++. ++++.|.+.+..++||+++  ++++|+|+.+|+++
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            5679999965  678899999999 9999999999999999986  78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.57  E-value=7.2e-05  Score=66.27  Aligned_cols=40  Identities=15%  Similarity=0.228  Sum_probs=37.1

Q ss_pred             cchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ...+.+|.+|++++.++.++.+++++|+.+++..+||+++
T Consensus        65 ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~  104 (187)
T COG3620          65 ITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE  104 (187)
T ss_pred             EeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC
Confidence            3456789999999999999999999999999999999987

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.56  E-value=0.00017  Score=58.20  Aligned_cols=58  Identities=22%  Similarity=0.471  Sum_probs=49.4

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC-CCcEEEEEEhhhhhcc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSV  133 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~-~~~IVGIVt~kDLl~~  133 (351)
                      ..++.++|.+  .+.++.+++++. ++++.|.+++...+||++++ .++++|+|+..|++++
T Consensus        57 ~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          57 PSAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             cccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence            3447888864  678899999999 89999999999999999864 2689999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.56  E-value=0.00016  Score=57.93  Aligned_cols=58  Identities=16%  Similarity=0.358  Sum_probs=50.6

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +...++.++|.+  .+.+++.++++. ++++.|.+++..++||++++ ++++|+++..|+++
T Consensus        55 ~~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~  112 (113)
T cd04615          55 LKDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR  112 (113)
T ss_pred             hcCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence            345678899974  678899999999 89999999999999999875 78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.56  E-value=0.00016  Score=57.79  Aligned_cols=56  Identities=18%  Similarity=0.332  Sum_probs=49.1

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..++.++|.+  .+.++.+++++. ++++.|.+.+..++||++++ ++++|+|+.+|+++
T Consensus        57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            3458999974  677899999999 89999999999999999865 78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.55  E-value=0.00012  Score=71.44  Aligned_cols=58  Identities=24%  Similarity=0.401  Sum_probs=51.9

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      +.+.+|+++|++  ++.++.+++++. ++++.|.+++..++||+++  ++++|+|+.+|++++
T Consensus       266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            456789999985  678999999999 9999999999999999974  689999999999865

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.53  E-value=0.00027  Score=73.17  Aligned_cols=100  Identities=16%  Similarity=0.223  Sum_probs=72.6

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCc---chhhhhccCC
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIRRI  149 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~---~V~dIM~r~v  149 (351)
                      ..++.++|++ ..++++++++++. ++++.|.++++..+||++++ ++++|+|+.+||++.......   .-..++....
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa  222 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA  222 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence            3578999973 4678999999999 99999999999999999876 899999999999876421110   1112222233


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.+.++  -.+.+..|.+.+++++ |+|.
T Consensus       223 i~~~~~--~~e~a~~L~~agvdvi-vvD~  248 (486)
T PRK05567        223 VGVGAD--NEERAEALVEAGVDVL-VVDT  248 (486)
T ss_pred             cccCcc--hHHHHHHHHHhCCCEE-EEEC
Confidence            333332  3788888999999955 6664

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.52  E-value=0.00019  Score=57.45  Aligned_cols=55  Identities=22%  Similarity=0.455  Sum_probs=48.7

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +.++.++|.+  .+.++.+++++. ++++.|.+++..++||+++  ++++|+|+..|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            4578889964  678899999999 8999999999999999986  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.52  E-value=0.00018  Score=69.84  Aligned_cols=57  Identities=19%  Similarity=0.296  Sum_probs=51.2

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      +.+|+++|++  ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus       262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA  318 (321)
T ss_pred             CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence            4568999985  677899999999 99999999999999999875 789999999999865

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.52  E-value=0.00021  Score=57.10  Aligned_cols=56  Identities=21%  Similarity=0.413  Sum_probs=49.7

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.++.++|.+  .+.++++++++. ++++.|.+++...+||++ + ++++|+|+.+|+++
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence            45678999975  678899999999 899999999999999998 3 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.51  E-value=0.00017  Score=58.86  Aligned_cols=58  Identities=16%  Similarity=0.399  Sum_probs=50.6

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      ...++.++|.+  .+.++++++++. ++++.|.+.+...+||++++ ++++|+|+.+|++++
T Consensus        68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~~  125 (125)
T cd04631          68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLKA  125 (125)
T ss_pred             hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhcC
Confidence            34578899964  678999999999 89999999999999999875 789999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.50  E-value=0.00038  Score=72.88  Aligned_cols=102  Identities=21%  Similarity=0.255  Sum_probs=75.7

Q ss_pred             cccccccCc---ceEEEcCC-CCchHHHHHHHHHcCCcEeeeee-CCCCcEEEEEEhhhhhccccc------C-------
Q 018757           76 AKDAMTPIS---KAFSLDLD-ATLTLDTLNAIMTMGHSRVPVYS-GNPTNIIGLILVKNLLSVDYR------D-------  137 (351)
Q Consensus        76 V~dIMtPr~---~VvtV~~d-~tv~~eal~~m~~~~~sriPVvd-~~~~~IVGIVt~kDLl~~~~~------~-------  137 (351)
                      ..++|.|+.   ....++.+ .+++ +...+|.++.|+.+||+- ++..+++|+|..+|+......      .       
T Consensus       545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~  623 (696)
T KOG0475|consen  545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY  623 (696)
T ss_pred             hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence            345554433   35556655 8999 899999999999999884 455789999999998643210      0       


Q ss_pred             --------------CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 --------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 --------------~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                    ...++++|.-.+.+|...++.+-++.+|++-+.....|..+
T Consensus       624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~  678 (696)
T KOG0475|consen  624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN  678 (696)
T ss_pred             cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC
Confidence                          12356776667888999999999999999888887766543

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.49  E-value=0.00018  Score=60.16  Aligned_cols=58  Identities=21%  Similarity=0.339  Sum_probs=51.1

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      ....++.++|.+  .+.++++++++. ++++.|.+.+.+++||++ + |+++|+|+.+|++++
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~~  135 (135)
T cd04586          78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLRA  135 (135)
T ss_pred             hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhcC
Confidence            356789999964  678999999999 899999999999999998 4 889999999998753

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.49  E-value=0.00021  Score=57.27  Aligned_cols=57  Identities=18%  Similarity=0.341  Sum_probs=50.3

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      +.+++++|.+  .+..+.+++++. ++++.|.+++...+||++++ ++++|+|+..|++++
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence            4578999975  578899999999 89999999999999999875 789999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.48  E-value=0.00027  Score=56.21  Aligned_cols=55  Identities=25%  Similarity=0.404  Sum_probs=48.6

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .++.++|.+  .+.++..++++. ++++.|.+++...+||++++ ++++|+|+..|+++
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence            467888875  678999999999 89999999999999999874 78999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.48  E-value=0.00024  Score=57.97  Aligned_cols=52  Identities=17%  Similarity=0.243  Sum_probs=45.2

Q ss_pred             ccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           77 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        77 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .++|.  .++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus        68 ~~~~~--~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~  119 (120)
T cd04641          68 RSQDF--EGVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ  119 (120)
T ss_pred             cccCC--CCCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence            44554  2567999999999 99999999999999999875 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.48  E-value=0.00041  Score=55.68  Aligned_cols=53  Identities=25%  Similarity=0.510  Sum_probs=47.8

Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHH-cCCcEeeeeeCCCC-cEEEEEEhhhhh
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMT-MGHSRVPVYSGNPT-NIIGLILVKNLL  131 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~-~~~sriPVvd~~~~-~IVGIVt~kDLl  131 (351)
                      ++.++|+.  .++++.++.++. ++.+.|.+ +++.++||++++ + +++|+++.+|++
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence            69999985  678999999999 99999999 799999999975 4 899999999974

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.47  E-value=0.00021  Score=58.12  Aligned_cols=58  Identities=16%  Similarity=0.396  Sum_probs=50.6

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      ...++.++|..  ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++..|++++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~~  122 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLKA  122 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhcC
Confidence            45678899964  678899999999 89999999999999999875 889999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.47  E-value=0.00044  Score=71.52  Aligned_cols=96  Identities=10%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhh----hccCC
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKM----IIRRI  149 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dI----M~r~v  149 (351)
                      ..++++|++  +++++++++++. +++++|.++++..+||++++ ++++|+|+.+||++.....  +..+.    .....
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa  219 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA  219 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence            569999985  788999999999 99999999999999999865 7899999999999754322  22111    01111


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                        +.......+.+..|.+.+...+ |+|-
T Consensus       220 --v~~~~~~~~ra~~Lv~aGVd~i-~~D~  245 (475)
T TIGR01303       220 --VGINGDVGGKAKALLDAGVDVL-VIDT  245 (475)
T ss_pred             --eeeCccHHHHHHHHHHhCCCEE-EEeC
Confidence              2233456677777777777764 5553

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.47  E-value=0.00041  Score=72.09  Aligned_cols=61  Identities=15%  Similarity=0.264  Sum_probs=54.9

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .+.+|+++|++..++++++++.++. +++++|.+++...+||++++ ++++|+|+.+||++..
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNR  217 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcc
Confidence            3567999999766889999999999 99999999999999999876 7899999999999764

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.46  E-value=0.00024  Score=60.12  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=49.6

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.+|+++|++  .+.++.+++++. ++++.|.+.++..+||+++  ++++|+|+.+|+++
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            35679999975  567899999999 8999999999999999985  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.46  E-value=0.00015  Score=75.37  Aligned_cols=104  Identities=11%  Similarity=0.126  Sum_probs=72.5

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCC--cchhhhhccCC
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRI  149 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~--~~V~dIM~r~v  149 (351)
                      .+.+|.++|++...++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++......  .+..+-.-+-.
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~  238 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL  238 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence            4678999999765688999999999 99999999999999999875 78999999999987643211  11111101101


Q ss_pred             --cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 --PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 --~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                        ..|.....-.+-++.+.+.+..++ ++|-
T Consensus       239 vgaavg~~~~~~~r~~~l~~ag~d~i-~iD~  268 (505)
T PLN02274        239 VGAAIGTRESDKERLEHLVKAGVDVV-VLDS  268 (505)
T ss_pred             EEEEEcCCccHHHHHHHHHHcCCCEE-EEeC
Confidence              123333344566677777888765 4443

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.45  E-value=0.00027  Score=57.41  Aligned_cols=57  Identities=14%  Similarity=0.330  Sum_probs=50.3

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ...++.++|..  .+.++++++++. ++++.|.+.+...+||++++ ++++|+++..|++.
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            56678899953  678999999999 99999999999999999875 78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.45  E-value=0.00019  Score=58.24  Aligned_cols=57  Identities=16%  Similarity=0.391  Sum_probs=50.5

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +...++.++|.+  .+.++++++++. ++++.|.+.+.+.+||+++  ++++|+++.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            456678999964  678999999999 9999999999999999986  78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.45  E-value=0.00043  Score=45.93  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=27.9

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++.+++++.+++..|.+.+.+.++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   31 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDE   31 (49)
T ss_pred             CceEecCCCcHHHHHHHHHHhCCCcccEECC
Confidence            3567899999999999999999999999987

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.45  E-value=0.00022  Score=57.74  Aligned_cols=58  Identities=16%  Similarity=0.277  Sum_probs=47.3

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ...++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus        56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            345889997644433334599998 89999999999999999865 78999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.43  E-value=0.00028  Score=56.43  Aligned_cols=56  Identities=18%  Similarity=0.450  Sum_probs=49.1

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.++.++|.+  .+.++++++++. ++++.|.+++...+||++++  +++|+|+.+|+++
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence            45678999974  678899999999 89999999999999999863  7999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.43  E-value=0.00026  Score=57.37  Aligned_cols=57  Identities=19%  Similarity=0.274  Sum_probs=50.6

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ....++.++|.+  .+.+++.++++. ++++.|.+.++..+||+++  ++++|+|+.+|+++
T Consensus        64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            456779999975  678999999999 8999999999999999975  78999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.42  E-value=0.00026  Score=58.89  Aligned_cols=55  Identities=24%  Similarity=0.434  Sum_probs=48.9

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..++.++|.+  ++..+.+++++. ++++.|.+.+..++||+++  ++++|+++.+|+++
T Consensus        77 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          77 GKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             CCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            4478999974  678899999999 8999999999999999986  78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.41  E-value=0.00033  Score=55.55  Aligned_cols=55  Identities=31%  Similarity=0.536  Sum_probs=48.8

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..+.++|.+  .+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            468899975  677899999999 89999999999999999875 78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.41  E-value=0.00035  Score=55.57  Aligned_cols=57  Identities=18%  Similarity=0.333  Sum_probs=50.1

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.++.++|.+  .+..+++++++. ++++.|.+.+...+||++++ ++++|+|+.+|+++
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            45678999964  678899999999 89999999999999999875 78999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.41  E-value=0.00033  Score=55.64  Aligned_cols=56  Identities=23%  Similarity=0.437  Sum_probs=47.0

Q ss_pred             ccccccccccCcceEEEcC-CCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDL-DATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~-d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..++.++|..  .+..+.. ++++. ++++.|.+.++..+||++++ ++++|+|+.+|+++
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence            4678999964  3344555 99998 89999999999999999865 78999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.40  E-value=0.00022  Score=57.34  Aligned_cols=56  Identities=20%  Similarity=0.304  Sum_probs=47.3

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      .+.++.++|.+  .+.++++++++. ++++.|.+.+  .+||++++ ++++|+++.+|++++
T Consensus        61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~~  116 (116)
T cd04643          61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILKA  116 (116)
T ss_pred             hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhcC
Confidence            35679999975  577899999999 8999998865  59999865 789999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.39  E-value=0.00039  Score=55.38  Aligned_cols=54  Identities=15%  Similarity=0.233  Sum_probs=47.4

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .++.++|.+  ...+++++.++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence            357888975  567899999999 9999999999999999973  78999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.39  E-value=0.00036  Score=55.84  Aligned_cols=56  Identities=23%  Similarity=0.296  Sum_probs=49.4

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.+++++|.+  .+..+++++++. ++++.|.+++...+||+++  ++++|+|+..|+++
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            35578899964  678899999998 8999999999999999975  68999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.38  E-value=0.00029  Score=56.41  Aligned_cols=55  Identities=22%  Similarity=0.405  Sum_probs=49.0

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..++.++|.+  .+.++.+++++. ++++.|.+++...+||+++  ++++|+|+.+|+++
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            5678999975  577899999999 9999999999999999986  78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.37  E-value=0.00034  Score=55.86  Aligned_cols=56  Identities=23%  Similarity=0.379  Sum_probs=49.2

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +..+.++|..  .+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus        55 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          55 DAPVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CCcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            3468899964  678999999999 99999999999999999875 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.35  E-value=0.00038  Score=54.90  Aligned_cols=55  Identities=20%  Similarity=0.345  Sum_probs=48.7

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +..+.++|.+  .+.++++++++. ++++.|.+++...+||+++  ++++|+|+.+|++.
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~  104 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence            4568899965  678999999999 9999999999999999985  78999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.35  E-value=0.00041  Score=55.09  Aligned_cols=46  Identities=20%  Similarity=0.381  Sum_probs=42.0

Q ss_pred             eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           86 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        86 VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      +.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus        51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~~   96 (96)
T cd04614          51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLKP   96 (96)
T ss_pred             cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhcC
Confidence            67899999999 89999999999999999875 789999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.33  E-value=0.00066  Score=54.27  Aligned_cols=56  Identities=14%  Similarity=0.297  Sum_probs=48.9

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +.++.++|.+  .+.++..++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence            3468899864  678899999999 89999999999999999875 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.29  E-value=0.00093  Score=56.94  Aligned_cols=31  Identities=19%  Similarity=0.216  Sum_probs=28.6

Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++++.+++++.++++.|.+++...+||+|+
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~   32 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS   32 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC
Confidence            4678999999999999999999999999987

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.28  E-value=0.00043  Score=56.38  Aligned_cols=55  Identities=25%  Similarity=0.419  Sum_probs=48.6

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..+.++|..  +++++++++++. ++++.|.+++...+||++++ ++++|+++..|++.
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            357888864  678999999999 89999999999999999875 78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.28  E-value=0.00051  Score=54.83  Aligned_cols=55  Identities=24%  Similarity=0.446  Sum_probs=49.0

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +.++.++|..  .+.++++++++. ++++.|.+++.+++||+++  ++++|+++.+|+++
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            4678899964  678999999999 9999999999999999986  78999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.28  E-value=0.00056  Score=45.35  Aligned_cols=46  Identities=20%  Similarity=0.481  Sum_probs=40.6

Q ss_pred             eEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           86 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        86 VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      +.++++++++. ++++.|.+.++..+||++++ ++++|+++.++++..
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence            35688999998 89999999999999999875 789999999998754

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.26  E-value=0.00067  Score=55.96  Aligned_cols=52  Identities=17%  Similarity=0.264  Sum_probs=45.2

Q ss_pred             ccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           77 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        77 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .++|.  .++.++++++++. ++++.|.+++..++||++++ ++++|+|+..|+++
T Consensus        74 ~~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          74 DGVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             ccccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            34554  3678899999999 99999999999999999875 78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.26  E-value=0.00096  Score=53.12  Aligned_cols=54  Identities=19%  Similarity=0.323  Sum_probs=47.5

Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.++|.+  .+.+++.++++. ++++.|.+++...+||++++ ++++|+|+.+|+++
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence            48888864  677899999999 89999999999999999875 88999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.24  E-value=0.00053  Score=56.49  Aligned_cols=58  Identities=19%  Similarity=0.369  Sum_probs=49.6

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeC-CCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~-~~~~IVGIVt~kDLl~  132 (351)
                      .+.++.++|++  +++++++++++. ++++.|.+.++..+||+++ +.++++|+|+.+|++.
T Consensus        69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            45678999974  678999999998 8999999999999999853 3478999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.19  E-value=0.00083  Score=53.50  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=48.5

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..+.++|.+  .+..++++.++. ++++.|.+.+...+||++++ ++++|+|+.+|+++
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            568888863  678899999999 89999999999999999875 78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.15  E-value=0.00074  Score=53.90  Aligned_cols=54  Identities=15%  Similarity=0.203  Sum_probs=46.3

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..+.++|.   .+.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus        57 ~~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  110 (111)
T cd04590          57 LDLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE  110 (111)
T ss_pred             CCHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence            34666664   457899999999 89999999999999999875 78999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.15  E-value=0.0017  Score=65.33  Aligned_cols=93  Identities=13%  Similarity=0.126  Sum_probs=62.2

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-CCcchhhhhccC
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRR  148 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-~~~~V~dIM~r~  148 (351)
                      ...-+++++||.|...  ....+.+ .  +++.   ++.+.+.|++.      |+++..+...+... ....+.+ +...
T Consensus       270 ~~~~l~a~~~m~~~~~--~~~~~~~-~--~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~  334 (382)
T TIGR03415       270 PLNVLTARSLMRPLTD--LEHVDGG-W--CVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVES-LEAA  334 (382)
T ss_pred             cccceeHHHHhccccc--ccccCcc-h--hhhh---cccceeEeecc------ceecccchHhHhhcccccchhh-hccc
Confidence            3556788999965332  2223322 2  3333   78888888864      78887776543221 2335666 4778


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          149 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       149 v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.+|++++++.+++..+......+ +|+|+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~  363 (382)
T TIGR03415       335 PTVINPDTLMRDVLAARHRTGGAI-LLVEN  363 (382)
T ss_pred             CcccCCCCcHHHHHHHHhcCCCCe-EEeeC
Confidence            889999999999999999888774 46666

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.14  E-value=0.0019  Score=53.64  Aligned_cols=32  Identities=6%  Similarity=-0.002  Sum_probs=29.6

Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          147 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       147 r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++.+++++.++.++++.|.+++...+||+|+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~   33 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE   33 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            56788999999999999999999999999987

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.10  E-value=0.0014  Score=66.75  Aligned_cols=41  Identities=7%  Similarity=0.025  Sum_probs=37.5

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.+++.++.+++++.++++.|.+++...+||+|+
T Consensus       334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~  374 (454)
T TIGR01137       334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE  374 (454)
T ss_pred             cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            45788998899999999999999999999999999999987

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.04  E-value=0.0013  Score=52.96  Aligned_cols=49  Identities=20%  Similarity=0.396  Sum_probs=43.7

Q ss_pred             ccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           79 AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        79 IMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +|.+  ++.++++++++. ++++.|.+++...+||+++  ++++|+|+.+|+++
T Consensus        56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence            7864  677899999999 8999999999999999953  78999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.96  E-value=0.0013  Score=53.15  Aligned_cols=57  Identities=18%  Similarity=0.266  Sum_probs=47.4

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCc---EeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHS---RVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~s---riPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.+++++|.+  .+.++++++++. ++++.|.+++..   ..||++++ ++++|+|+.+|+++
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence            45679999975  678899999999 899999988753   44678765 89999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=96.92  E-value=0.0021  Score=60.58  Aligned_cols=40  Identities=18%  Similarity=0.332  Sum_probs=36.5

Q ss_pred             cchhhhhccC-CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRKMIIRR-IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~dIM~r~-v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .+++++|.++ ++++++++++.++++.|.+.+...++|+|+
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~  195 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE  195 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC
Confidence            4688998888 899999999999999999999999999987

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.90  E-value=0.0029  Score=62.17  Aligned_cols=104  Identities=17%  Similarity=0.226  Sum_probs=76.8

Q ss_pred             HHHHHHHhhcCcccccccccccCcceEEEcC-CCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCc
Q 018757           61 ETTIIAGALELTEKTAKDAMTPISKAFSLDL-DATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV  139 (351)
Q Consensus        61 E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~-d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~  139 (351)
                      -+..++++-...-.++++||.+ .+...... ..... .++..+...+.+.+.+++. .++.+|+|+..++..+      
T Consensus       261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~-~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~------  331 (386)
T COG4175         261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPR-VALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA------  331 (386)
T ss_pred             HHHHHhcCChhheeeHHHhhcc-cccccccccccccc-hhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc------
Confidence            4667777777778899999985 32222222 22333 5788888888877777774 4679999999877654      


Q ss_pred             chhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                          .+..++..++.++++.+.+..+.+...+++ |+|+
T Consensus       332 ----~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvde  365 (386)
T COG4175         332 ----ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVDE  365 (386)
T ss_pred             ----cccccccccCccchHHHHHHHHhcCCCcee-EEcC
Confidence                246778889999999999999999988765 6666

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=96.90  E-value=0.0018  Score=62.82  Aligned_cols=86  Identities=13%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---Cc------chhhh
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AV------PLRKM  144 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~------~V~dI  144 (351)
                      .++.++|.|   ++++++++++. ++++.|++++...+||+|+. |.++|+|+..|++......   ..      .+..+
T Consensus       133 ~~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~  207 (292)
T PRK15094        133 FSMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL  207 (292)
T ss_pred             CCHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe
Confidence            458899964   45899999999 99999999999999999875 7899999999999865432   11      12111


Q ss_pred             hccCCcEecCCCCHHHHHHHH
Q 018757          145 IIRRIPRVSEDMPLYDILNEF  165 (351)
Q Consensus       145 M~r~v~~V~~~~~L~daL~~m  165 (351)
                       ....+.|+..+++.++.+.+
T Consensus       208 -~~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        208 -SRHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             -CCCeEEEEeccCHHHHHHHh
Confidence             22346799999999999887

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.90  E-value=0.0017  Score=55.21  Aligned_cols=56  Identities=20%  Similarity=0.423  Sum_probs=49.5

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ...++.++|.+  .+.+++.++++. ++++.|.+.+++++||+++  ++++|+|+.+|++.
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            45678899975  678999999999 8999999999999999986  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=96.85  E-value=0.0019  Score=68.06  Aligned_cols=59  Identities=27%  Similarity=0.363  Sum_probs=51.6

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCC-CcEEEEEEhhhhhccc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP-TNIIGLILVKNLLSVD  134 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~-~~IVGIVt~kDLl~~~  134 (351)
                      +.++.++|++  ++.++++++++. ++++.|.+++.+.+||+|++. ++++|+|+.+|+++..
T Consensus       511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            4679999975  677899999999 999999999999999998653 4799999999998764

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.84  E-value=0.0021  Score=66.85  Aligned_cols=76  Identities=14%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             cCCCCCHHHHHHHHHhhc---CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhh
Q 018757           53 KGGDLTHDETTIIAGALE---LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKN  129 (351)
Q Consensus        53 ~~G~L~~~E~~mI~~~l~---l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kD  129 (351)
                      ..|.++  ++++..+++.   -...+|+++||.  ++++++.++-+- +|+-.|.++++.++||+++  |+++|+|+..|
T Consensus       192 ~~GIvT--~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~d  264 (610)
T COG2905         192 LLGIVT--RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTD  264 (610)
T ss_pred             ccceee--hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHH
Confidence            466665  5666777765   235689999995  889999999999 9999999999999999975  78999999999


Q ss_pred             hhcccc
Q 018757          130 LLSVDY  135 (351)
Q Consensus       130 Ll~~~~  135 (351)
                      |++...
T Consensus       265 Il~l~s  270 (610)
T COG2905         265 ILRLFS  270 (610)
T ss_pred             HHHhhC
Confidence            997644

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.77  E-value=0.0049  Score=47.96  Aligned_cols=53  Identities=21%  Similarity=0.464  Sum_probs=46.8

Q ss_pred             cccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           76 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        76 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +.++|..  ++.+++.++++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence            5677864  677899999999 99999999999999999876 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.73  E-value=0.0031  Score=49.97  Aligned_cols=54  Identities=17%  Similarity=0.320  Sum_probs=46.6

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ..+.++|..  .+.+++.++++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            356778864  567899999999 9999999999999999984  68999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.70  E-value=0.0026  Score=50.28  Aligned_cols=54  Identities=19%  Similarity=0.280  Sum_probs=44.1

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      +.++.++|.+  .+.++++++++. ++.+.|.+ . ..+||++++ ++++|+|+.+|++.
T Consensus        56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~  109 (110)
T cd04609          56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK  109 (110)
T ss_pred             CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence            3568899964  577899999998 89998888 3 347888765 78999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.68  E-value=0.0026  Score=65.33  Aligned_cols=59  Identities=20%  Similarity=0.387  Sum_probs=52.9

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      +.+++++|++ .+++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++..
T Consensus       142 ~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       142 GKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence            5679999974 3778999999999 99999999999999999976 8999999999999764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=96.59  E-value=0.0069  Score=61.48  Aligned_cols=90  Identities=10%  Similarity=0.060  Sum_probs=68.0

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---Ccc-hhhhh---
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVP-LRKMI---  145 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~~-V~dIM---  145 (351)
                      ..+++++|.   ++.++++++++. ++++.|++++....+|+|+. |.++|+||..|++.....+   ... -.+.+   
T Consensus       254 ~~~l~~~~~---~~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~  328 (408)
T TIGR03520       254 NFDWQSLLR---EPYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI  328 (408)
T ss_pred             CCCHHHHcC---CCeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence            345788886   457899999999 99999999999999999875 8899999999999765321   111 11111   


Q ss_pred             ccCCcEecCCCCHHHHHHHHHh
Q 018757          146 IRRIPRVSEDMPLYDILNEFQK  167 (351)
Q Consensus       146 ~r~v~~V~~~~~L~daL~~m~~  167 (351)
                      ......++..+++.++.+.|.-
T Consensus       329 ~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       329 DDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             CCCeEEEEeccCHHHHHHHhCC
Confidence            1234668889999999998843

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=95.62  E-value=0.013  Score=60.34  Aligned_cols=61  Identities=20%  Similarity=0.289  Sum_probs=54.3

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .-.+..++++|.+  +++++.+++..+ ++.+.+.+++...+||+|++ ++++|+|+..|++...
T Consensus       192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi  252 (451)
T COG2239         192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI  252 (451)
T ss_pred             CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence            4567789999986  588999999998 99999999999999999986 8999999999998654

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=95.56  E-value=0.015  Score=57.64  Aligned_cols=61  Identities=16%  Similarity=0.300  Sum_probs=53.7

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      .++.++..+||.  ..+++.+.+|+. .+.+.|...++.-+||++++ .+++|+|+.+|+++++.
T Consensus       246 ~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~lq  306 (432)
T COG4109         246 KPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             CCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHHH
Confidence            456778999995  568999999999 89999999999999999986 78999999999997653

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=94.67  E-value=0.031  Score=56.39  Aligned_cols=112  Identities=10%  Similarity=0.158  Sum_probs=76.7

Q ss_pred             CCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           56 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        56 ~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      .++..+.+.+    .=....+.++|+++.  ++.+.+.++. ++-+++.+++-.++||++++ |++|-+|+..||.+...
T Consensus       157 ~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~~~  228 (503)
T KOG2550|consen  157 IITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKNRD  228 (503)
T ss_pred             EEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-CceeeeeehhhhhhhcC
Confidence            3455555555    334567899999865  7899999999 89999999999999999986 99999999999986531


Q ss_pred             ---cCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          136 ---RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       136 ---~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                         .....-+++|....  |.....=..-+.++.+.++..+ |+|.
T Consensus       229 yPlask~~~kqll~gAa--iGTre~dK~rl~ll~~aGvdvv-iLDS  271 (503)
T KOG2550|consen  229 YPLASKDSTKQLLCGAA--IGTRDDDKERLDLLVQAGVDVV-ILDS  271 (503)
T ss_pred             CCccccCcccceeeeec--cccccchhHHHHHhhhcCCcEE-EEec
Confidence               11112223333222  2223334556777777887754 5554

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=94.59  E-value=0.068  Score=53.53  Aligned_cols=57  Identities=19%  Similarity=0.464  Sum_probs=49.5

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ..+.+.|.+  .+.++++++++. +++..|.++++. +||++++ ++++|+|+..+++.+..
T Consensus       302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY  358 (363)
T ss_pred             Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            357888864  667899999999 999999999999 9999876 89999999999987653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=93.56  E-value=0.037  Score=49.00  Aligned_cols=27  Identities=37%  Similarity=0.786  Sum_probs=23.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHh
Q 018757            1 MAPIVRVLLCLFFPISYPISKILDLML   27 (351)
Q Consensus         1 ~Ap~l~~~~~i~~Plv~pls~ll~~ll   27 (351)
                      ++|++++++++++|++|++.++.++++
T Consensus       122 ~a~~l~~~~~l~~P~~~~l~~i~~~~~  148 (183)
T PF01595_consen  122 LAPLLRVLMILLYPLVWLLSFISNKIL  148 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999888664

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>PRK11573 hypothetical protein; Provisional

Probab=93.50  E-value=0.22  Score=50.74  Aligned_cols=78  Identities=14%  Similarity=0.115  Sum_probs=59.9

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----C----cchhhhhccCCcEecCC
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----A----VPLRKMIIRRIPRVSED  155 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~----~~V~dIM~r~v~~V~~~  155 (351)
                      ++..|+++.++. ++++.|++++..-.-|+|+. |...|+||..|++...-.+     +    ..+..+ ....+.|+..
T Consensus       263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~  339 (413)
T PRK11573        263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGT  339 (413)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEee
Confidence            567899999999 99999999998888889875 8899999999999754321     1    011111 2234668889


Q ss_pred             CCHHHHHHHH
Q 018757          156 MPLYDILNEF  165 (351)
Q Consensus       156 ~~L~daL~~m  165 (351)
                      +++.++-+.+
T Consensus       340 ~~l~d~~~~l  349 (413)
T PRK11573        340 ANVREINKAF  349 (413)
T ss_pred             eEHHHHHHHh
Confidence            9999998887

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=92.85  E-value=0.2  Score=50.92  Aligned_cols=58  Identities=19%  Similarity=0.281  Sum_probs=48.7

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ...+.++|.+  .+.++++++++. +++..+.++.+. +||++++ ++++|+|+..+++....
T Consensus       336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD  393 (400)
T ss_pred             CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            3457777754  567899999999 899999997776 9999875 89999999999998764

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=89.13  E-value=1.8  Score=44.19  Aligned_cols=79  Identities=11%  Similarity=0.078  Sum_probs=60.0

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC------C---cchhhhhccCCcEecCC
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD------A---VPLRKMIIRRIPRVSED  155 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~------~---~~V~dIM~r~v~~V~~~  155 (351)
                      ++..+++..++. ++++.|++.+..-..|+|+. |.+.|+||..|++......      .   ..+... ..+-..|...
T Consensus       280 ~~~~Vpet~~~~-~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~-~~~~~~v~G~  356 (429)
T COG1253         280 PPLFVPETLSLS-DLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQR-DDDGWLVDGR  356 (429)
T ss_pred             CCeEecCCCcHH-HHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHhCCCcCcccccccccceEe-cCCcEEEecc
Confidence            567899999999 99999999998888888875 8899999999999764321      1   111111 1223568899


Q ss_pred             CCHHHHHHHHH
Q 018757          156 MPLYDILNEFQ  166 (351)
Q Consensus       156 ~~L~daL~~m~  166 (351)
                      +++.++.+.+-
T Consensus       357 ~~l~e~~~~l~  367 (429)
T COG1253         357 VPLEELEELLG  367 (429)
T ss_pred             ccHHHHHHHhC
Confidence            99999888774

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=88.27  E-value=1.6  Score=42.20  Aligned_cols=68  Identities=18%  Similarity=0.206  Sum_probs=42.6

Q ss_pred             cEeeeeeCCCCcEEEEEEhhhhhcccccC-----------------CcchhhhhccCC----cEecCCCCHHHHHHHHHh
Q 018757          109 SRVPVYSGNPTNIIGLILVKNLLSVDYRD-----------------AVPLRKMIIRRI----PRVSEDMPLYDILNEFQK  167 (351)
Q Consensus       109 sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----------------~~~V~dIM~r~v----~~V~~~~~L~daL~~m~~  167 (351)
                      +++.|.++  |+++=+=+..+++..+.++                 ...+.+.|....    -.+.......+++..+..
T Consensus       204 dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~  281 (309)
T COG1125         204 DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLA  281 (309)
T ss_pred             ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHh
Confidence            46777764  7888888888887654432                 122334433221    113444555668888888


Q ss_pred             CCCcEEEEEec
Q 018757          168 GHSHIAVVYKD  178 (351)
Q Consensus       168 ~~~~~apVVDe  178 (351)
                      .+...+||+|+
T Consensus       282 ~~~~~~~Vvd~  292 (309)
T COG1125         282 RGRSVLPVVDE  292 (309)
T ss_pred             cCCceeEEECC
Confidence            88888899988

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=83.10  E-value=2.5  Score=42.71  Aligned_cols=59  Identities=19%  Similarity=0.221  Sum_probs=47.2

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .+-.++|.--.+++.++.++++. .-+..+++++-.--.|+|+- |.+.|+||..|++...
T Consensus       265 ~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEEI  323 (423)
T COG4536         265 FTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEEI  323 (423)
T ss_pred             ccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHHH
Confidence            44556665556889999999999 78888888877777788875 8999999999999643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		8e-05

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 103 IMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDIL 162
           I+   HSR PVY  +  NIIG++L K+LL      A+ +R + +R    + E   L  +L
Sbjct: 33  IIETAHSRFPVYEDDRDNIIGILLAKDLLRYXLEPALDIRSL-VRPAVFIPEVKRLNVLL 91
Query: 163 NEFQKGHSHIAVVYKD 178
            EF+   +H+A+V  +
Sbjct: 92  REFRASRNHLAIVIDE 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	6e-29
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	3e-28
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	5e-28
3ocm_A	173	Putative membrane protein; structural genomics, PS	9e-27
3oco_A	153	Hemolysin-like protein containing CBS domains; str	4e-25
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	2e-24
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	7e-24
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	1e-22
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	1e-21
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	1e-21
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	7e-07
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	8e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-04
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	3e-04

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score =  109 bits (274), Expect = 6e-29
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 37  RAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLT 96
           + +++  +     E    G + H+E  ++     L E+T    M P S    LDL+  L 
Sbjct: 9   QEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD 64

Query: 97  LDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRIPRVSED 155
              L  +M   HSR PV   N  +++G+I  K LLS     + + L   +++    V   
Sbjct: 65  -ANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVD-LVKNCNFVPNS 122

Query: 156 MPLYDILNEFQKGHSHIAVV 175
           +   ++L  F+   S +  V
Sbjct: 123 LSGMELLEHFRTTGSQMVFV 142

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score =  106 bits (268), Expect = 3e-28
 Identities = 29/140 (20%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 37  RAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLT 96
             ++   +     +A +      D    +   L+ ++   +DAM   S+   L  + ++ 
Sbjct: 5   AEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 97  LDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS-VDYRDAVPLRKMIIRRIPRVSED 155
                 ++   HSR PV   +   ++G++  K+LL  +   +   L+  I+R    V E 
Sbjct: 61  -RITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKS-ILRPAVFVPEG 118

Query: 156 MPLYDILNEFQKGHSHIAVV 175
             L  +L EF++  +H+A+V
Sbjct: 119 KSLTALLKEFREQRNHMAIV 138

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score =  105 bits (266), Expect = 5e-28
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 53  KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 112
             G +   E  ++    E  EK  ++ M P +    +    +     L  +   G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYP 60

Query: 113 VYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSH 171
           V   N  +I+G + +++L +     + + L + I+R I  +SE++ +   L   +K    
Sbjct: 61  VCRKNKDDILGFVHIRDLYNQKINENKIELEE-ILRDIIYISENLTIDKALERIRKEKLQ 119

Query: 172 IAVV 175
           +A+V
Sbjct: 120 LAIV 123

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score =  103 bits (259), Expect = 9e-27
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 50  EAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHS 109
                     +E  +++G L L E++ +  MTP +    +++D          +    HS
Sbjct: 12  AMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHS 70

Query: 110 RVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGH 169
             PV  G+   ++G+   K+L++    +    R   +R    V E + +  +++  ++  
Sbjct: 71  FFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRN-RLRDPIIVHESIGILRLMDTLKRSR 129

Query: 170 SHIAVV 175
             + +V
Sbjct: 130 GQLVLV 135

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 98.3 bits (246), Expect = 4e-25
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 56  DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYS 115
           +   ++   +  A E+ +K A D M   +    +D+D T+  D L   +   +SR PV +
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTA 60

Query: 116 -GNPTNIIGLILVKNLLS-VDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIA 173
             +   IIG     +++      D   +   I+R I  V E+M + D++ E       +A
Sbjct: 61  DNDKDKIIGYAYNYDIVRQARIDDKAKIST-IMRDIVSVPENMKVPDVMEEMSAHRVPMA 119

Query: 174 VV 175
           +V
Sbjct: 120 IV 121

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 95.6 bits (239), Expect = 2e-24
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 71  LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL 130
             E+T  D M P S+   LD+   L    L  I+   HSR PVY  +  NIIG++L K+L
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDL 60

Query: 131 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 175
           L      A+ +R  ++R    + E   L  +L EF+   +H+A+V
Sbjct: 61  LRYMLEPALDIRS-LVRPAVFIPEVKRLNVLLREFRASRNHLAIV 104

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 94.0 bits (235), Expect = 7e-24
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 71  LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL 130
             +      MTP    F +D   T+  + L+       SR  VYS    NIIG +    L
Sbjct: 3   AQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLEL 61

Query: 131 LS--VDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 175
                       L   ++R I  V  +  L  + ++       +A+V
Sbjct: 62  FKMQQSGSGQKQLGA-VMRPIQVVLNNTALPKVFDQMMTHRLQLALV 107

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 91.0 bits (227), Expect = 1e-22
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 73  EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132
           + +  D M P ++   +D++       +  +    H R+ +Y  +  + I ++ V+    
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR 59

Query: 133 VDYRDAVPLRKMIIRRIPR----VSEDMPLYDILNEFQKGHSHIAVV 175
           +   +     K I+ R       V E  PL   L +FQ+    + +V
Sbjct: 60  L-MTEKKEFTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLV 105

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 88.2 bits (220), Expect = 1e-21
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 73  EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132
           ++  +D M P S+  +L  + TL  + L+ I+   HSR PV S +  +I G+++ K+LL 
Sbjct: 2   DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP 60

Query: 133 --VDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 175
                 +A  + K ++R    V E   +  +L EF+    H+A+V
Sbjct: 61  FMRSDAEAFSMDK-VLRTAVVVPESKRVDRMLKEFRSQRYHMAIV 104

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 88.3 bits (220), Expect = 1e-21
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 73  EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 132
           +   +D M P S+  S+    T   + L A++   HSR PV   +  +++G++L K+LL 
Sbjct: 2   DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLP 60

Query: 133 VDYR---DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVV 175
           +  +   D+  ++K ++R    V E   L  +L EF+  H+H+A+V
Sbjct: 61  LILKADGDSDDVKK-LLRPATFVPESKRLNVLLREFRANHNHMAIV 105

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 70  ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--------TNI 121
           +L E T    M    K   + +   L    L  +   G++ +PV   +           I
Sbjct: 10  QLLEATVGQFMIEADKVAHVQVGNNL-EHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI 68

Query: 122 IGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178
           +  I     +  +  D + + ++++  IPR+  + P+          +  + V   +
Sbjct: 69  MNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVIN-NGFVCVENDE 124

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 70  ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLI---- 125
           E  + T K  + P  K   +     L    L  +   G+S +PV   +   + GLI    
Sbjct: 7   EFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTM 64

Query: 126 LVKNLLSVDYRDAVPLRKMIIRRI-----PRVSEDMPLYDILNEFQKGHSHIAVVYKD 178
           ++  +L ++  +   L  M +  +     PR+  D  L   +      H  + V   D
Sbjct: 65  MMDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVN-HPFVCVENDD 121

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 70  ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLI---- 125
           E  +   KD M    K   + +   L    L  ++  G+S +PV       + GLI    
Sbjct: 11  EFQQIFVKDLMISSEKVAHVQIGNGL-EHALLVLVKSGYSAIPVLDPM-YKLHGLISTAM 68

Query: 126 LVKNLLSVDYRDAVPLRKMII-----RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 178
           ++  +L ++  +   L +M +     + IP +  +      L      H  I  V +D
Sbjct: 69  ILDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTID-HPFICAVNED 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 43/304 (14%), Positives = 84/304 (27%), Gaps = 94/304 (30%)

Query: 77  KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTN----IIGLIL------ 126
           KD ++    AF  + D     D   +I++       + S +  +    +   +L      
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 127 ----VKNLLSVDY-----------------------------RDAVPLRKMIIRRIPRVS 153
               V+ +L ++Y                              D     K  + R+    
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 154 EDMPLYDILNEFQK------------GHSHIAV-VYKD--LNEKKEGELF---KDNCKKP 195
           +   L   L E +             G + +A+ V     +  K + ++F     NC  P
Sbjct: 139 K---LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 196 RGQPEK----SSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCIL 251
               E       Q   N  + +  +   KL     Q   +        +K +  C   +L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR----RLLKSKPYENC-LLVL 250

Query: 252 D----------FENG----------PFPDFPSNDEAVGVITMEDVIEELLQEEILDETDE 291
                      F                DF S       I+++     L  +E+     +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLK 309

Query: 292 YVNI 295
           Y++ 
Sbjct: 310 YLDC 313

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 46/364 (12%), Positives = 115/364 (31%), Gaps = 105/364 (28%)

Query: 26  MLGKGHAVL----LRRAELKTFVNFH------GNEAGKGGDLTHDETTIIAGALELTEKT 75
           +LG G   +        +++  ++F        N         +   T++    +L  + 
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC--------NSPETVLEMLQKLLYQI 209

Query: 76  AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLIL--VKNLLSV 133
             +  +    + ++ L        L  ++     +   Y      +  L+L  V+N  + 
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLL-----KSKPY---ENCL--LVLLNVQNAKAW 259

Query: 134 DYRDAVPLR-KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKD-- 190
           +  +   L  K+++      +    + D L+     H  +      L   +   L     
Sbjct: 260 NAFN---LSCKILL-----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 191 NCKK---PRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCS 247
           +C+    PR +   ++ +    ++   +++R+ L +      K V       +K      
Sbjct: 312 DCRPQDLPR-EVLTTNPRR---LSIIAESIRDGLAT--WDNWKHV-----NCDKLTTIIE 360

Query: 248 YCI--LD-------FEN-GPFPD---FPSNDEAVGVITM----------EDVIEEL---- 280
             +  L+       F+    FP     P+      ++++            V+ +L    
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-----LLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 281 ---------------LQEEILDETDEYVNIHNRIKVNMHASQEKSQSQDNTSQPSLNGSS 325
                          +  E+  + +    +H  I V+ H +  K+   D+   P L+   
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VD-HYNIPKTFDSDDLIPPYLDQYF 473

Query: 326 AFQH 329
            + H
Sbjct: 474 -YSH 476

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 102 AIMTM---GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV----PLRKMIIRRIPRVSE 154
           AI  M      ++PV   +  +++G++  + L++           P  K + +R+ R++E
Sbjct: 407 AIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNKRVIRLNE 466

Query: 155 DMPLYDILNEFQKGHSHIAVVYKDLNEKKE 184
              L  +    +   S   ++       K 
Sbjct: 467 SEILGKLARVLEVDPS--VLILGKNPAGKV 494

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.96
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.95
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.94
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.93
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.92
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.89
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.89
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.89
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.88
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.88
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.88
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.87
4esy_A	170	CBS domain containing membrane protein; structural	99.87
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.83
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.82
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.81
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.8
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.8
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.8
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.79
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.79
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.79
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.79
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.78
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.78
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.77
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.77
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.77
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.77
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.76
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.76
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.76
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.75
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.75
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.74
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.74
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.74
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.74
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.74
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.74
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.74
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.74
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.72
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.71
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.71
3ddj_A	296	CBS domain-containing protein; structural genomics	99.68
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.68
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.67
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.66
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.65
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.65
3ddj_A	296	CBS domain-containing protein; structural genomics	99.65
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.64
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.64
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.63
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.63
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.62
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.62
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.61
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.59
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.58
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.57
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.55
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.54
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.53
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.39
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.28
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.25
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.97
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.74
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.71
4esy_A	170	CBS domain containing membrane protein; structural	98.47
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.39
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.34
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.29
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.27
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.25
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.24
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.22
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.21
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.2
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.19
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.19
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.19
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.18
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.18
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.18
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.17
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.17
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.15
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.15
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.15
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.15
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.14
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.11
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.1
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.1
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.1
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.1
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.09
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.09
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.09
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.08
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.08
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.05
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.01
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.0
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.0
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.0
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.97
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.97
3ocm_A	173	Putative membrane protein; structural genomics, PS	97.93
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.91
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.85
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.76
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.71
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.66
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.5
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.48
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.44
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.3
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.28
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.14
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.12
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.98
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.86

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.96  E-value=5.2e-29  Score=218.22  Aligned_cols=140  Identities=24%  Similarity=0.438  Sum_probs=94.4

Q ss_pred             CCCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEee
Q 018757           33 VLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP  112 (351)
Q Consensus        33 ~~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriP  112 (351)
                      ..+|++||+.+++    ++.+.|.|+++|++++++++.|.+++|+++|+|+.+++++++++++. ++++.|.+++++++|
T Consensus         5 ~~~t~~el~~l~~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~p   79 (172)
T 3lhh_A            5 DNVTQEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRFP   79 (172)
T ss_dssp             ------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEEE
T ss_pred             ccCCHHHHHHHHH----HHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEE
Confidence            4689999999998    45678999999999999999999999999999888999999999999 999999999999999


Q ss_pred             eeeCCCCcEEEEEEhhhhhcccccC-CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          113 VYSGNPTNIIGLILVKNLLSVDYRD-AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       113 Vvd~~~~~IVGIVt~kDLl~~~~~~-~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      |++++.++++|+|+.+||+++...+ ..++.++| +++++|++++++.+++..|.+++.+++||+|+
T Consensus        80 Vvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~  145 (172)
T 3lhh_A           80 VCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE  145 (172)
T ss_dssp             EESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT
T ss_pred             EEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence            9986447899999999999875433 56899998 99999999999999999999999999999998

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.95  E-value=2e-27  Score=204.68  Aligned_cols=139  Identities=20%  Similarity=0.356  Sum_probs=127.1

Q ss_pred             CCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeee
Q 018757           34 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV  113 (351)
Q Consensus        34 ~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPV  113 (351)
                      .+|++||+.|++.    +.++|.|+++|++++++++.|.+++|+++|+|+.+++++++++++. ++++.|.+++++++||
T Consensus         2 ~~t~~el~~li~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLRQ----AHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHHH----HHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHHh----HHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            4799999999983    5678999999999999999999999999999988899999999999 9999999999999999


Q ss_pred             eeCCCCcEEEEEEhhhhhccccc-CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          114 YSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       114 vd~~~~~IVGIVt~kDLl~~~~~-~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.++++|+|+.+||+.+... ...++.++| +++++|++++++.+|+..|.+++.+++||+|+
T Consensus        77 vd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~  141 (156)
T 3oi8_A           77 IGEDKDEVLGILHAKDLLKYMFNPEQFHLKSIL-RPAVFVPEGKSLTALLKEFREQRNHMAIVIDE  141 (156)
T ss_dssp             ESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHC-BCCCEEETTSBHHHHHHHHHHTTCCEEEEECT
T ss_pred             EcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHc-CCCEEECCCCCHHHHHHHHHhcCCeEEEEECC
Confidence            98753589999999999987544 356899996 66899999999999999999999999999998

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.94  E-value=7.1e-27  Score=206.14  Aligned_cols=154  Identities=19%  Similarity=0.294  Sum_probs=135.7

Q ss_pred             cccCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhh
Q 018757           51 AGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL  130 (351)
Q Consensus        51 s~~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDL  130 (351)
                      +.++|.|+++|++++++++.|.+++|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||
T Consensus        13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl   91 (173)
T 3ocm_A           13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL   91 (173)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence            4567999999999999999999999999999988899999999999 999999999999999998654789999999999


Q ss_pred             hccccc-CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCCccccccccccCCCCCCCCCCccccccccc
Q 018757          131 LSVDYR-DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNG  209 (351)
Q Consensus       131 l~~~~~-~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (351)
                      +.+... ...++.  |++++++|++++++.+++..|.+++.+++||+|+                               
T Consensus        92 ~~~~~~~~~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-------------------------------  138 (173)
T 3ocm_A           92 VADLITEGRVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADE-------------------------------  138 (173)
T ss_dssp             HHHHHHHSSCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-------------------------------
T ss_pred             HHHHhcCCcchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-------------------------------
Confidence            976532 245777  5789999999999999999999999999999998                               


Q ss_pred             cccccccccccccchhhhhccCCCCCCCCccccCCCCccccccCCCCCCCCCCCCCceEEEEeHHHHHHHHHhcccccch
Q 018757          210 VTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSNDEAVGVITMEDVIEELLQEEILDET  289 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGiiT~~Dvie~l~~~ei~de~  289 (351)
                                                                            +|+++||||+.||+++|++ ||.||.
T Consensus       139 ------------------------------------------------------~g~lvGiIT~~Dil~~l~~-~i~de~  163 (173)
T 3ocm_A          139 ------------------------------------------------------FGAIEGLVTPIDVFEAIAG-EFPDED  163 (173)
T ss_dssp             ------------------------------------------------------TCCEEEEECHHHHHHHHHC-CCCCTT
T ss_pred             ------------------------------------------------------CCCEEEEEeHHHHHHHHhC-cCCCcc
Confidence                                                                  4899999999999999984 999998


Q ss_pred             hhhh
Q 018757          290 DEYV  293 (351)
Q Consensus       290 d~~~  293 (351)
                      |.+.
T Consensus       164 ~~~~  167 (173)
T 3ocm_A          164 ELPD  167 (173)
T ss_dssp             SCC-
T ss_pred             ccHh
Confidence            8754

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.93  E-value=6.2e-26  Score=192.62  Aligned_cols=124  Identities=20%  Similarity=0.413  Sum_probs=100.2

Q ss_pred             cCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           53 KGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        53 ~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      ++|.|+++|++++++++.|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+.
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~   80 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYN   80 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH
Confidence            46889999999999999999999999999988899999999999 99999999999999999875478999999999998


Q ss_pred             ccccC-CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          133 VDYRD-AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       133 ~~~~~-~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..... ..++.++| ++++++++++++.+++..|.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  126 (148)
T 3lv9_A           81 QKINENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE  126 (148)
T ss_dssp             HHHHHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHhcCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence            75433 67899998 99999999999999999999999999999998

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.92  E-value=1e-25  Score=192.84  Aligned_cols=120  Identities=23%  Similarity=0.386  Sum_probs=105.9

Q ss_pred             CCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeee-eCCCCcEEEEEEhhhhhcccc
Q 018757           57 LTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY-SGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        57 L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVv-d~~~~~IVGIVt~kDLl~~~~  135 (351)
                      |+++|++++++++.|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||+ +++.++++|+|+.+||+++..
T Consensus         3 l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~   81 (153)
T 3oco_A            3 ADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR   81 (153)
T ss_dssp             -----CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh
Confidence            6778999999999999999999999878899999999999 99999999999999999 543478999999999997643


Q ss_pred             cC-CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          136 RD-AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       136 ~~-~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .. ..+++++| ++++++++++++.+|+..|.+++.+.+||+|+
T Consensus        82 ~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  124 (153)
T 3oco_A           82 IDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE  124 (153)
T ss_dssp             HHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT
T ss_pred             cCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence            32 57899998 99999999999999999999999999999998

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.89  E-value=2.1e-22  Score=182.47  Aligned_cols=128  Identities=9%  Similarity=0.095  Sum_probs=115.3

Q ss_pred             CCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHc---CCcEe
Q 018757           35 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM---GHSRV  111 (351)
Q Consensus        35 ~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~---~~sri  111 (351)
                      +..++.+.++.          .+++++++++++++.|.+.+|+++|++  +++++++++|+. ++++.|+++   ++..+
T Consensus        25 l~~~~~~~~l~----------~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~~   91 (205)
T 3kxr_A           25 LPESFTDRALA----------QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDNL   91 (205)
T ss_dssp             SCHHHHHHHHH----------HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCEE
T ss_pred             CCHHHHHHHHH----------cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeEE
Confidence            55666666665          278999999999999999999999996  788999999999 999999997   88999


Q ss_pred             eeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          112 PVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       112 PVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ||++++ ++++|+|+.+||+....  ..+++++|.+++++|++++++.++++.|.+++.+.+||+|+
T Consensus        92 ~Vvd~~-~~lvGivt~~dll~~~~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~  155 (205)
T 3kxr_A           92 FIVDEA-DKYLGTVRRYDIFKHEP--HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD  155 (205)
T ss_dssp             EEECTT-CBEEEEEEHHHHTTSCT--TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT
T ss_pred             EEEcCC-CeEEEEEEHHHHHhCCC--cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC
Confidence            999875 89999999999997643  46899999899999999999999999999999999999998

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.89  E-value=3.1e-23  Score=174.28  Aligned_cols=104  Identities=30%  Similarity=0.509  Sum_probs=93.5

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc---cCCcchhhhhccCC
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY---RDAVPLRKMIIRRI  149 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~---~~~~~V~dIM~r~v  149 (351)
                      +++|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+++..   ....++.++| +++
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m-~~~   79 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLL-RPA   79 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTC-BCC
T ss_pred             CCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHc-CCC
Confidence            678999999988899999999999 99999999999999999875478999999999998754   1256899996 568


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++++++.+++..|.+++.+++||+|+
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~  108 (136)
T 3lfr_A           80 TFVPESKRLNVLLREFRANHNHMAIVIDE  108 (136)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCCEEEEECT
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeC
Confidence            99999999999999999999999999998

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.89  E-value=1.2e-22  Score=168.91  Aligned_cols=106  Identities=34%  Similarity=0.539  Sum_probs=95.8

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP  150 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~  150 (351)
                      ..+++|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+++......+++++| ++++
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m-~~~~   79 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLV-RPAV   79 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGC-BCCC
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHh-CCCe
Confidence            46789999999988999999999999 999999999999999998744789999999999987655567899996 6789


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++.+++..|.+++.+++||+|+
T Consensus        80 ~v~~~~~l~~~~~~m~~~~~~~~pVvd~  107 (129)
T 3jtf_A           80 FIPEVKRLNVLLREFRASRNHLAIVIDE  107 (129)
T ss_dssp             EEETTCBHHHHHHHHHTSSCCEEEEECC
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEeC
Confidence            9999999999999999999999999998

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.88  E-value=4.2e-23  Score=179.00  Aligned_cols=111  Identities=17%  Similarity=0.251  Sum_probs=95.2

Q ss_pred             HHHHhhc-CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc------
Q 018757           64 IIAGALE-LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------  136 (351)
Q Consensus        64 mI~~~l~-l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~------  136 (351)
                      ||.+.++ |-..+++++|+|+.+++++++++|+. +|++.|.+++++++||++++ ++++|+|+.+|++++...      
T Consensus         4 mi~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~~   81 (156)
T 3k6e_A            4 MIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQE   81 (156)
T ss_dssp             HHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHH
T ss_pred             hHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcccccc
Confidence            4444442 44568999999999999999999999 99999999999999999875 899999999999865422      


Q ss_pred             --CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          137 --DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       137 --~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                        ...++.++|.++++++++++++.+|++.|.+++  ++||+|+
T Consensus        82 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~  123 (156)
T 3k6e_A           82 IMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA  123 (156)
T ss_dssp             HHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECT
T ss_pred             cccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEec
Confidence              156899999999999999999999999998775  5999998

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.88  E-value=1e-22  Score=170.02  Aligned_cols=104  Identities=17%  Similarity=0.322  Sum_probs=93.7

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccC
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRR  148 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~  148 (351)
                      +++|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+++...+    ..++.++| ++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-DE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-BC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-cC
Confidence            368999999988899999999999 9999999999999999976457999999999999876543    24688986 88


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          149 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       149 v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++++.++++.|.+++.+++||+|+
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~  108 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVDE  108 (130)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEECT
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEcC
Confidence            999999999999999999999999999998

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.88  E-value=9.2e-23  Score=169.60  Aligned_cols=107  Identities=22%  Similarity=0.336  Sum_probs=93.3

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--Ccchhhhhcc
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIR  147 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r  147 (351)
                      .|.+++|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||+.+...+  ..+++++| +
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m-~   79 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVM-R   79 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHS-E
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHh-c
Confidence            478899999999988889999999999 9999999999999999987547899999999999875432  56899997 7


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++++++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~  110 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVDE  110 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEECT
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC
Confidence            7899999999999999999999999999998

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.87  E-value=4.8e-22  Score=164.62  Aligned_cols=105  Identities=30%  Similarity=0.510  Sum_probs=93.1

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--CCcchhhhhccCC
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRI  149 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--~~~~V~dIM~r~v  149 (351)
                      ++++|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+||++....  ...+++++| +++
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m-~~~   78 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RTA   78 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHC-BCC
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHc-CCC
Confidence            3678999999877789999999999 999999999999999998754789999999999976532  356899996 668


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++++++.+++..|.+++.+.+||+|+
T Consensus        79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  107 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQRYHMAIVIDE  107 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHTTCCEEEEECT
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEeC
Confidence            89999999999999999999999999997

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.87  E-value=6.5e-22  Score=172.22  Aligned_cols=112  Identities=16%  Similarity=0.255  Sum_probs=98.0

Q ss_pred             HHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----
Q 018757           61 ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----  136 (351)
Q Consensus        61 E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----  136 (351)
                      ++..+.+.  +.+++|+|||++  +++++++++|+. +|++.|.+++++++||+|++ |+++|+|+.+||++....    
T Consensus         7 ~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~~   80 (170)
T 4esy_A            7 RRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWIY   80 (170)
T ss_dssp             HHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTHH
T ss_pred             HHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhcccc
Confidence            44555555  468899999985  788999999999 99999999999999999876 899999999999865321    


Q ss_pred             ----------------------CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          137 ----------------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       137 ----------------------~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                            ...++.++|.+++++|.+++++.+|+..|.+++++.+||+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~  144 (170)
T 4esy_A           81 EASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD  144 (170)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET
T ss_pred             chhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC
Confidence                                  135789999999999999999999999999999999999987

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.83  E-value=1.9e-20  Score=176.32  Aligned_cols=135  Identities=13%  Similarity=0.136  Sum_probs=118.5

Q ss_pred             CCCHHHHHHHHHhcccccccC---------CCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHH
Q 018757           34 LLRRAELKTFVNFHGNEAGKG---------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIM  104 (351)
Q Consensus        34 ~~s~eEL~~LI~~~~~es~~~---------G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~  104 (351)
                      .++.+++..+++..    .+.         |.++..++.++.+++.+.+.+|+++|++  +++++++++++. ++++.|+
T Consensus        90 ~l~~d~~~~ll~~l----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~  162 (278)
T 2yvy_A           90 ELSLDDLADALQAV----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  162 (278)
T ss_dssp             HSCHHHHHHHHHHH----HHHCHHHHHHHHHHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHH
T ss_pred             cCCHHHHHHHHHhC----CCccHHHHHHHHHcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHH
Confidence            35667777777632    223         5688999999999999999999999996  788999999999 9999999


Q ss_pred             Hc-----CCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          105 TM-----GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       105 ~~-----~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++     +++++||++++ ++++|+|+.+|++....  ..++.++|.+++++|++++++.++++.|.+++.+.+||+|+
T Consensus       163 ~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~~~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  238 (278)
T 2yvy_A          163 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE  238 (278)
T ss_dssp             HHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHSCT--TCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HccCCccceeEEEEECCC-CCEEEEEEHHHHhcCCC--CCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC
Confidence            87     78999999875 89999999999987643  56899999899999999999999999999999999999998

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.82  E-value=1.1e-19  Score=184.48  Aligned_cols=135  Identities=13%  Similarity=0.136  Sum_probs=121.1

Q ss_pred             CCCHHHHHHHHHhcccccccC---------CCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHH
Q 018757           34 LLRRAELKTFVNFHGNEAGKG---------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIM  104 (351)
Q Consensus        34 ~~s~eEL~~LI~~~~~es~~~---------G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~  104 (351)
                      .++.+|+..+++..    .++         +.++.++++++.+++.+.+.+|+++|++  +++++++++|+. ++++.|+
T Consensus       110 ~l~~dd~~~ll~~l----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQAV----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHHH----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHhC----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            47788888888742    334         7899999999999999999999999996  889999999999 9999999


Q ss_pred             Hc-----CCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          105 TM-----GHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       105 ~~-----~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++     +++++||++++ ++++|+|+.+|++....  +.+++++|.+++++|++++++.++++.|.+++.+.+||+|+
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~~--~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe  258 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE  258 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSCT--TSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCCC--CCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC
Confidence            87     47999999875 89999999999987543  56899999899999999999999999999999999999998

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.81  E-value=3e-19  Score=169.37  Aligned_cols=118  Identities=17%  Similarity=0.171  Sum_probs=108.7

Q ss_pred             CCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHc-----CCcEeeeeeCCCCcEEEEEEhhh
Q 018757           55 GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM-----GHSRVPVYSGNPTNIIGLILVKN  129 (351)
Q Consensus        55 G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~-----~~sriPVvd~~~~~IVGIVt~kD  129 (351)
                      +.|+.+++..+.+++.+.+.+|+++|++  +++++++++++. ++++.|+++     +++++||++++ ++++|+|+.+|
T Consensus       118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~d  193 (286)
T 2oux_A          118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRD  193 (286)
T ss_dssp             HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHH
Confidence            3688889999999999999999999986  788999999999 999999998     88999999875 89999999999


Q ss_pred             hhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          130 LLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       130 Ll~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++....  ..++.++|.+++++|++++++.+++..|.+++.+.+||+|+
T Consensus       194 ll~~~~--~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~  240 (286)
T 2oux_A          194 LIVNDD--DTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY  240 (286)
T ss_dssp             HTTSCT--TSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHcCCC--CCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC
Confidence            997643  46899999899999999999999999999999999999997

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.80  E-value=3.5e-19  Score=149.71  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=93.6

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc----------------
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----------------  135 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~----------------  135 (351)
                      ..++|+++|+++.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+....                
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            4678999999877889999999999 99999999999999999875 89999999999986421                


Q ss_pred             -cCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          136 -RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       136 -~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                       ....++.++|.++++++++++++.+++..|.+++.+.+||+|+
T Consensus        81 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~  124 (152)
T 4gqw_A           81 KTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS  124 (152)
T ss_dssp             ---CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT
T ss_pred             HhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC
Confidence             1246899999888999999999999999999999999999997

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.80  E-value=2.2e-19  Score=146.31  Aligned_cols=101  Identities=12%  Similarity=0.246  Sum_probs=92.7

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEec
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  153 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~  153 (351)
                      ++|+++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++.+......++.++|.+++++++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~   76 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAH   76 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEE
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEEC
Confidence            478999986  678899999999 99999999999999999865 89999999999998765555689999989999999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          154 EDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       154 ~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++.+++..|.+++.+.+||+|+
T Consensus        77 ~~~~l~~~~~~~~~~~~~~l~Vvd~  101 (122)
T 3kpb_A           77 EDEPVDHVAIKMSKYNISGVPVVDD  101 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEECC
Confidence            9999999999999999999999988

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.79  E-value=2.7e-19  Score=155.01  Aligned_cols=104  Identities=17%  Similarity=0.192  Sum_probs=92.9

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc------------------
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD------------------  134 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~------------------  134 (351)
                      .++|+++|+++.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||++..                  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            468999999876889999999999 99999999999999999875 8999999999998532                  


Q ss_pred             -------------ccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          135 -------------YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       135 -------------~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                   .....++.++|.++++++++++++.+|+..|.+++.+.+||+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  137 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA  137 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT
T ss_pred             hhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC
Confidence                         11246799999888999999999999999999999999999997

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.79  E-value=1.8e-19  Score=152.48  Aligned_cols=106  Identities=17%  Similarity=0.198  Sum_probs=94.2

Q ss_pred             hcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---------CCc
Q 018757           69 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAV  139 (351)
Q Consensus        69 l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---------~~~  139 (351)
                      ..|..++|+++|+|..+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+.+...         ...
T Consensus        10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~   87 (150)
T 3lqn_A           10 DEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEEM   87 (150)
T ss_dssp             HHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGGC
T ss_pred             HhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhcC
Confidence            3467889999999866789999999999 99999999999999999875 899999999999875431         246


Q ss_pred             chhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++.++|.++++++.+++++.+++..|.+++.  +||+|+
T Consensus        88 ~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~  124 (150)
T 3lqn_A           88 KVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNE  124 (150)
T ss_dssp             BGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECT
T ss_pred             CHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECC
Confidence            8999998999999999999999999999886  999987

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.79  E-value=4.3e-19  Score=150.98  Aligned_cols=110  Identities=20%  Similarity=0.257  Sum_probs=91.9

Q ss_pred             HHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--------
Q 018757           65 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------  136 (351)
Q Consensus        65 I~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--------  136 (351)
                      ..+...|...+|+++|+++.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....        
T Consensus         2 ~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~   79 (157)
T 2emq_A            2 TWEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFER   79 (157)
T ss_dssp             --------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGG
T ss_pred             chhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHH
Confidence            34556678899999999766788999999999 99999999999999999875 889999999999876432        


Q ss_pred             -CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          137 -DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       137 -~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                       ...++.++|.++++++++++++.+++..|.+++.  +||+|+
T Consensus        80 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~  120 (157)
T 2emq_A           80 LETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND  120 (157)
T ss_dssp             GGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS
T ss_pred             hcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC
Confidence             2568999998999999999999999999999986  999987

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=2.9e-19  Score=154.44  Aligned_cols=109  Identities=9%  Similarity=0.138  Sum_probs=97.2

Q ss_pred             hhcCcccccccccccC-cceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcch
Q 018757           68 ALELTEKTAKDAMTPI-SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPL  141 (351)
Q Consensus        68 ~l~l~d~tV~dIMtPr-~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V  141 (351)
                      ...+..++|+++|+|+ .+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+||+++...     ...++
T Consensus        18 ~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v   95 (165)
T 3fhm_A           18 YFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQSV   95 (165)
T ss_dssp             CCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTSBG
T ss_pred             hHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccCCH
Confidence            4457889999999974 4678999999999 99999999999999999875 899999999999875322     24689


Q ss_pred             hhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          142 RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       142 ~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++|.++++++.+++++.+++..|.+++.+.+||+|+
T Consensus        96 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  132 (165)
T 3fhm_A           96 SVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN  132 (165)
T ss_dssp             GGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence            9999999999999999999999999999999999987

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.78  E-value=1.2e-18  Score=144.20  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=92.6

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---Ccchhhhhcc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIR  147 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~~V~dIM~r  147 (351)
                      |.+.+|+++|++  +++++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++.....+   ..++.++|.+
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC
Confidence            467899999986  678899999999 999999999999999999 4 7999999999998754322   4689999888


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++.++++++++.+++..|.+++.+.+||+|+
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~  106 (133)
T 2ef7_A           76 SLITIREDSPITGALALMRQFNIRHLPVVDD  106 (133)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEECC
Confidence            9999999999999999999999999999987

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.78  E-value=2.7e-18  Score=142.97  Aligned_cols=105  Identities=13%  Similarity=0.275  Sum_probs=92.8

Q ss_pred             hcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc-cccc---CCcchhhh
Q 018757           69 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS-VDYR---DAVPLRKM  144 (351)
Q Consensus        69 l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~-~~~~---~~~~V~dI  144 (351)
                      +.|...+|+++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+||++ ....   ...++.++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~   77 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERI   77 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGT
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCCcccCCHHHH
Confidence            46788999999985  778999999999 99999999999999999865 89999999999973 3322   24689999


Q ss_pred             hccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          145 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       145 M~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      |.++++++++++++.+++..|.+++.+.+ |+|+
T Consensus        78 m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~  110 (138)
T 2yzi_A           78 MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE  110 (138)
T ss_dssp             CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE
T ss_pred             hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC
Confidence            98999999999999999999999999999 9997

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.77  E-value=1.3e-18  Score=143.77  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=92.6

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---CcchhhhhccC
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRR  148 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~~V~dIM~r~  148 (351)
                      ...+|+++|++  ++.++++++++. ++++.|.+++++.+||+++  ++++|+|+.+|++++...+   ..+++++|.++
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   77 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLET   77 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBC
T ss_pred             cceEHHHhhcC--CcceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCC
Confidence            46899999986  678899999999 9999999999999999986  7899999999999876543   25699999999


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          149 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       149 v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.+++++.+++..|.+++.+.+||+|+
T Consensus        78 ~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~  107 (128)
T 3gby_A           78 VRSYRPGEQLFDNLISVAAAKCSVVPLADE  107 (128)
T ss_dssp             CCCBCTTSBGGGSHHHHHHCSSSEEEEECT
T ss_pred             CcEECCCCCHHHHHHHHHhCCCcEEEEECC
Confidence            999999999999999999999999999987

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.77  E-value=1.3e-18  Score=144.68  Aligned_cols=103  Identities=10%  Similarity=0.173  Sum_probs=90.9

Q ss_pred             cc-ccccccccC-cceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc-cccc----CCcchhhhh
Q 018757           73 EK-TAKDAMTPI-SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS-VDYR----DAVPLRKMI  145 (351)
Q Consensus        73 d~-tV~dIMtPr-~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~-~~~~----~~~~V~dIM  145 (351)
                      ++ +|+++|+|+ .+++++++++++. ++++.|.+++++++||++ + ++++|+|+.+||++ ....    ...++.++|
T Consensus         4 ~m~~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   80 (135)
T 2rc3_A            4 HMKTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIM   80 (135)
T ss_dssp             -CCBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTS
T ss_pred             cceeHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhc
Confidence            45 899999965 5788999999999 999999999999999998 4 78999999999985 2221    256899999


Q ss_pred             ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          146 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       146 ~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++++++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  113 (135)
T 2rc3_A           81 TRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD  113 (135)
T ss_dssp             BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cCCCeEECCCCcHHHHHHHHHHhCCCEEEEEeC
Confidence            899999999999999999999999999999986

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.77  E-value=8.4e-19  Score=148.86  Aligned_cols=103  Identities=22%  Similarity=0.212  Sum_probs=94.0

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhccCC
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRI  149 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r~v  149 (351)
                      ++|+++|+++.+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+||++....    ...++.++|.+++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCC
Confidence            58999999766888999999999 99999999999999999875 899999999999876433    2568999998999


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++.+++++.+++..|.+++.+.+||+|+
T Consensus       106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  134 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLMQSRHITCVLVADG  134 (149)
T ss_dssp             CEECTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEecC
Confidence            99999999999999999999999999998

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.77  E-value=1.2e-18  Score=149.19  Aligned_cols=105  Identities=19%  Similarity=0.308  Sum_probs=92.9

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---------CCcc
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVP  140 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---------~~~~  140 (351)
                      .+..++|+++|+++.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+.....         ...+
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQIT   87 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSB
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCC
Confidence            577899999999766788999999999 99999999999999999875 799999999999875432         2468


Q ss_pred             hhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          141 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       141 V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.++|.++++++.+++++.+++..|.+++.  +||+|+
T Consensus        88 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~  123 (159)
T 1yav_A           88 VEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND  123 (159)
T ss_dssp             HHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT
T ss_pred             HHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC
Confidence            999998899999999999999999998876  999987

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.76  E-value=3.6e-18  Score=141.95  Aligned_cols=104  Identities=13%  Similarity=0.277  Sum_probs=92.2

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhh-hccccc---CCcchhhhhc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL-LSVDYR---DAVPLRKMII  146 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDL-l~~~~~---~~~~V~dIM~  146 (351)
                      |.+.+|+++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+ +.....   ...++.++|.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCcCHHHHhC
Confidence            568899999985  678899999999 99999999999999999875 899999999999 764432   2568999988


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCC-----CcEEEEEec
Q 018757          147 RRIPRVSEDMPLYDILNEFQKGH-----SHIAVVYKD  178 (351)
Q Consensus       147 r~v~~V~~~~~L~daL~~m~~~~-----~~~apVVDe  178 (351)
                      ++++++++++++.+++..|.+++     .+.+||+|+
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~  117 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK  117 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC
Confidence            89999999999999999999999     999999996

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.76  E-value=3e-18  Score=143.73  Aligned_cols=100  Identities=11%  Similarity=0.126  Sum_probs=90.5

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCC--cEEEEEEhhhhhccccc---CCcchhhhhccC
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT--NIIGLILVKNLLSVDYR---DAVPLRKMIIRR  148 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~--~IVGIVt~kDLl~~~~~---~~~~V~dIM~r~  148 (351)
                      ++|+++|++  +++++++++++. ++++.|.+++++++||++++ +  +++|+|+.+||++....   ...++.++|.++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCC
Confidence            689999985  788999999999 99999999999999999875 6  89999999999876432   246899999899


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          149 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       149 v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++++ ++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~  109 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVNK  109 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEECT
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEcC
Confidence            9999999 9999999999999999999997

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.76  E-value=3.2e-18  Score=146.06  Aligned_cols=102  Identities=9%  Similarity=0.153  Sum_probs=91.4

Q ss_pred             cccccccccC----cceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcchhhh
Q 018757           74 KTAKDAMTPI----SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKM  144 (351)
Q Consensus        74 ~tV~dIMtPr----~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V~dI  144 (351)
                      .+|+++|+++    .+++++++++++. +|++.|.+++++++||.+ + ++++|+|+.+||+++...     ...++.++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   83 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD-G-DDIAGIVTERDYARKVVLQERSSKATRVEEI   83 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES-S-SSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee-C-CEEEEEEEHHHHHHHHHhccCCccccCHHHH
Confidence            5799999987    6788999999999 999999999999999964 3 789999999999875422     25689999


Q ss_pred             hccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          145 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       145 M~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      |.++++++.+++++.+++..|.+++.+.+||+|+
T Consensus        84 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  117 (157)
T 4fry_A           84 MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDG  117 (157)
T ss_dssp             SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence            9899999999999999999999999999999986

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.75  E-value=4.5e-18  Score=138.83  Aligned_cols=100  Identities=16%  Similarity=0.216  Sum_probs=89.6

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhccCC
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRI  149 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r~v  149 (351)
                      ++|+++|++  ++.++++++++. ++++.|.+++++++||++ + ++++|+|+.+|+++....    ...++.++|.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~   75 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDL   75 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGG
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCC
Confidence            478999986  778999999999 999999999999999999 4 899999999999865432    2568999988899


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++++++++.++++.|.+++.+.+||+|+
T Consensus        76 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~  104 (125)
T 1pbj_A           76 VTISPRATIKEAAEKMVKNVVWRLLVEED  104 (125)
T ss_dssp             GEECTTSCHHHHHHHHHHHTCSEEEEEET
T ss_pred             eEECCCCCHHHHHHHHHhcCCcEEEEEEC
Confidence            99999999999999999999999999987

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.75  E-value=7.7e-18  Score=144.61  Aligned_cols=103  Identities=17%  Similarity=0.256  Sum_probs=92.0

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII  146 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~  146 (351)
                      |..++|+++|++  . +++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+++...    ...++.++|.
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   88 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTSVPVHIIMT   88 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSE
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccCcCHHHHHc
Confidence            567899999984  3 4899999999 99999999999999999865 899999999999875421    2568999988


Q ss_pred             c--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          147 R--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       147 r--~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +  +++++.+++++.+|+..|.+++.+.+||+|+
T Consensus        89 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  122 (159)
T 3fv6_A           89 RMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD  122 (159)
T ss_dssp             ETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE
T ss_pred             CCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence            7  8899999999999999999999999999998

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.74  E-value=1e-17  Score=143.33  Aligned_cols=103  Identities=20%  Similarity=0.240  Sum_probs=92.1

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcE-eeeeeCCCCcEEEEEEhhhhhcccc-------------
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSR-VPVYSGNPTNIIGLILVKNLLSVDY-------------  135 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sr-iPVvd~~~~~IVGIVt~kDLl~~~~-------------  135 (351)
                      .+..++|+++|++  +++++++++++. ++++.|.++++++ +||++++  +++|+|+.+||+++..             
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            4778899999985  788999999999 9999999999999 9999874  8999999999987521             


Q ss_pred             ------cCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          136 ------RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       136 ------~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                            ....++.++|.+ ++++++++++.+|+..|.+++.+.+||+|+
T Consensus        87 ~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  134 (157)
T 1o50_A           87 RSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE  134 (157)
T ss_dssp             --CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC
Confidence                  125689999888 999999999999999999999999999997

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.74  E-value=3.9e-18  Score=141.14  Aligned_cols=104  Identities=14%  Similarity=0.213  Sum_probs=90.5

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhh-ccccc----CCcchhhhh
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL-SVDYR----DAVPLRKMI  145 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl-~~~~~----~~~~V~dIM  145 (351)
                      +.-++|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++ +....    ...++.++|
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   80 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELA   80 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHH
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHh
Confidence            345689999985  678899999999 99999999999999999765 8899999999998 44332    246899999


Q ss_pred             ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          146 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       146 ~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++++++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  113 (133)
T 1y5h_A           81 RDSIYYVDANASIQEMLNVMEEHQVRRVPVISE  113 (133)
T ss_dssp             TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            899999999999999999999999999999987

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.74  E-value=7e-18  Score=160.60  Aligned_cols=122  Identities=12%  Similarity=0.153  Sum_probs=104.9

Q ss_pred             CCCHHHHHHHHHhhcCc-ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           56 DLTHDETTIIAGALELT-EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        56 ~L~~~E~~mI~~~l~l~-d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .++++|+++++++++|- +.+|+++|+|+.++++++.++|+. ++++.|.+++++++||++++.++++|+|+.+|++...
T Consensus         3 ~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~   81 (334)
T 2qrd_G            3 DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI   81 (334)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHH
Confidence            45678899999999854 599999999999999999999999 9999999999999999997668999999999998643


Q ss_pred             c--------cC------Ccchh-------hhhccCC--cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          135 Y--------RD------AVPLR-------KMIIRRI--PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       135 ~--------~~------~~~V~-------dIM~r~v--~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .        ..      ..++.       ++|.+++  +++++++++.++++.|.+++.+.+||+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~  148 (334)
T 2qrd_G           82 KYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV  148 (334)
T ss_dssp             HHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEE
T ss_pred             HHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeC
Confidence            1        11      22332       3467777  99999999999999999999999999998

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.74  E-value=1e-17  Score=142.97  Aligned_cols=110  Identities=12%  Similarity=0.160  Sum_probs=92.5

Q ss_pred             HHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeC-CCCcEEEEEEhhhhhcccccC-------
Q 018757           66 AGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLSVDYRD-------  137 (351)
Q Consensus        66 ~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~-~~~~IVGIVt~kDLl~~~~~~-------  137 (351)
                      .+.+.+..++|+++|++  +++++++++++. ++++.|.+++++++||+++ +.++++|+|+.+||+......       
T Consensus         5 ~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~   81 (164)
T 2pfi_A            5 GRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPG   81 (164)
T ss_dssp             -----CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------C
T ss_pred             cccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCc
Confidence            34566788999999986  678899999999 9999999999999999986 248999999999998754321       


Q ss_pred             -CcchhhhhccC------CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 -AVPLRKMIIRR------IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 -~~~V~dIM~r~------v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                       ..++.++|.++      ++++.+++++.+++..|.+++.+.+||+|+
T Consensus        82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  129 (164)
T 2pfi_A           82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR  129 (164)
T ss_dssp             CCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET
T ss_pred             ccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC
Confidence             35788998776      789999999999999999999999999986

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.74  E-value=1.1e-17  Score=139.47  Aligned_cols=105  Identities=15%  Similarity=0.217  Sum_probs=89.9

Q ss_pred             cCccccccc---ccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcch
Q 018757           70 ELTEKTAKD---AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPL  141 (351)
Q Consensus        70 ~l~d~tV~d---IMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V  141 (351)
                      ++-+.++++   +|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....     ...++
T Consensus         4 ~~~~~~v~~~~~~~~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v   79 (144)
T 2nyc_A            4 HFLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSV   79 (144)
T ss_dssp             GGGGSBGGGSSCCBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBH
T ss_pred             chhhcchhhcCCCCCC--CceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccH
Confidence            345677888   7863  778999999999 99999999999999999875 899999999999875432     14689


Q ss_pred             hhhhcc------CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          142 RKMIIR------RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       142 ~dIM~r------~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++|.+      +++++++++++.+++..|.+++.+.+||+|+
T Consensus        80 ~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  122 (144)
T 2nyc_A           80 GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD  122 (144)
T ss_dssp             HHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC
Confidence            999876      6899999999999999999999999999997

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.74  E-value=6.9e-18  Score=147.01  Aligned_cols=106  Identities=19%  Similarity=0.238  Sum_probs=92.1

Q ss_pred             CcccccccccccCcc--eEEE--cCCCCchHHHHHHHHHcCCcEeeee--eCCCCcEEEEEEhhhhhcccc---------
Q 018757           71 LTEKTAKDAMTPISK--AFSL--DLDATLTLDTLNAIMTMGHSRVPVY--SGNPTNIIGLILVKNLLSVDY---------  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~--VvtV--~~d~tv~~eal~~m~~~~~sriPVv--d~~~~~IVGIVt~kDLl~~~~---------  135 (351)
                      +...+|+++|++..+  ++++  ++++++. +|++.|.+++++++||+  ++ .++++|+|+.+||+....         
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~-~~~lvGiit~~dl~~~~~~~~~~~~~~   85 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRE-SQRLVGFVLRRDLIISIENARKKQDGV   85 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTT-TCBEEEEEEHHHHHHHHHHHHTSCSCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECC-CCeEEEEEEHHHHHHHHHhhcccCCCc
Confidence            467899999998533  6778  9999999 99999999999999999  44 489999999999986532         


Q ss_pred             -------------------cCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          136 -------------------RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       136 -------------------~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                         ....++.++|.+++++|++++++.+|+..|.+++.+.+||+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~  147 (185)
T 2j9l_A           86 VSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN  147 (185)
T ss_dssp             CTTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEEC
Confidence                               1246799998899999999999999999999999999999986

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.74  E-value=8.6e-18  Score=144.65  Aligned_cols=103  Identities=19%  Similarity=0.236  Sum_probs=92.0

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc------------cCCc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY------------RDAV  139 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~------------~~~~  139 (351)
                      ..++|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+....            ....
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            46789999986  678899999999 99999999999999999865 88999999999986532            1256


Q ss_pred             chhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++.++|.++++++++++++.+|+..|.+++.+.+||+|+
T Consensus        79 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  117 (160)
T 2o16_A           79 PLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK  117 (160)
T ss_dssp             BHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET
T ss_pred             CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC
Confidence            899999889999999999999999999999999999987

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.74  E-value=7.1e-18  Score=148.39  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=91.5

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc-----cCCcchhhhhccC
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-----RDAVPLRKMIIRR  148 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~-----~~~~~V~dIM~r~  148 (351)
                      ++|+++|++  +++++++++++. +++++|.+++++++||++++ ++++|+|+.+||+....     ....++.++|.++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~   84 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   84 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCC
Confidence            789999985  788999999999 99999999999999999865 88999999999987543     1256899998889


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          149 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       149 v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++++.++++.|.+++.+.+||+|+
T Consensus        85 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  114 (184)
T 1pvm_A           85 IPKVKSDYDVKDVAAYLSENGLERCAVVDD  114 (184)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CcEECCCCCHHHHHHHHHHcCCcEEEEEcC
Confidence            999999999999999999999999999998

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.71  E-value=7.8e-18  Score=160.24  Aligned_cols=124  Identities=12%  Similarity=0.254  Sum_probs=99.8

Q ss_pred             ccCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhh
Q 018757           52 GKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL  131 (351)
Q Consensus        52 ~~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl  131 (351)
                      +.+|.+.+.+.+.+.+.  |.+.+|+++|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+|+.+|++
T Consensus        15 ~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll   91 (330)
T 2v8q_E           15 EHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI   91 (330)
T ss_dssp             --------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHH
T ss_pred             hHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHH
Confidence            44666777777778887  56889999999999999999999999 9999999999999999997657899999999998


Q ss_pred             cccccC------------Ccc-------hhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          132 SVDYRD------------AVP-------LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       132 ~~~~~~------------~~~-------V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ......            ...       ++++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus        92 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~  157 (330)
T 2v8q_E           92 NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP  157 (330)
T ss_dssp             HHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT
T ss_pred             HHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC
Confidence            643110            112       23567889999999999999999999999999999986

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.71  E-value=1.4e-17  Score=157.91  Aligned_cols=125  Identities=12%  Similarity=0.209  Sum_probs=106.5

Q ss_pred             cCCCCCHHHHHHHHHhhcC-cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhh
Q 018757           53 KGGDLTHDETTIIAGALEL-TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL  131 (351)
Q Consensus        53 ~~G~L~~~E~~mI~~~l~l-~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl  131 (351)
                      +.|.++++|+++++++++| .+.+|.|+|+|+.++++++.++|+. +|++.|.+++++++||++++.++++|+++.+|++
T Consensus         8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~   86 (323)
T 3t4n_C            8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFI   86 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHH
Confidence            4566788999999999998 9999999999999999999999999 9999999999999999997667999999999998


Q ss_pred             ccccc----C----------Ccchhhh------hccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          132 SVDYR----D----------AVPLRKM------IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       132 ~~~~~----~----------~~~V~dI------M~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .....    .          ...+.++      |.++++++++++++.+++..|.+++.+.+||+|+
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~  153 (323)
T 3t4n_C           87 NVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQ  153 (323)
T ss_dssp             HHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEE
T ss_pred             HHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEec
Confidence            64310    0          1223444      3678899999999999999999999999999998

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.68  E-value=1.7e-16  Score=148.52  Aligned_cols=130  Identities=15%  Similarity=0.215  Sum_probs=106.9

Q ss_pred             CCCHHHHHHHHHhcccccccCCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeee
Q 018757           34 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPV  113 (351)
Q Consensus        34 ~~s~eEL~~LI~~~~~es~~~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPV  113 (351)
                      .+|..||...+..    +..       ......+++.+.+.+|+++|++  +++++.+++++. ++++.|.+++++++||
T Consensus        64 ivT~~Di~~~~~~----~~~-------~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpV  129 (296)
T 3ddj_A           64 LLTTRDLLSTVES----YCK-------DSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPV  129 (296)
T ss_dssp             EEEHHHHHGGGTT----CC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEE
T ss_pred             EEeHHHHHHHhcc----ccc-------ccccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEEE
Confidence            4667777665531    110       0334555666678899999996  678999999999 9999999999999999


Q ss_pred             eeCCCCcEEEEEEhhhhhcccccC--CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          114 YSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       114 vd~~~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++ ++++|+++.+|++......  ..++.++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus       130 vd~~-~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~  195 (296)
T 3ddj_A          130 VDIN-DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD  195 (296)
T ss_dssp             ECTT-SCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             EcCC-CcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            9875 8899999999998765432  46899999899999999999999999999999999999997

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.68  E-value=4e-16  Score=141.25  Aligned_cols=101  Identities=15%  Similarity=0.105  Sum_probs=91.2

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcE
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR  151 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~  151 (351)
                      ...+++++|++  +++++++++|+. +++++|.+++++++||++++ ++++|+|+.+|++....  ..+++++|.+++++
T Consensus        11 ~~~~~~~~~~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~--~~~v~~im~~~~~~   84 (213)
T 1vr9_A           11 HHMKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFF   84 (213)
T ss_dssp             --CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCC
T ss_pred             cccCHHHhhcC--CCeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC--CCcHHHHccCCCEE
Confidence            34578999985  778999999999 99999999999999999865 88999999999987764  45899999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          152 VSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       152 V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++++.++++.|.+++.+.+||+|+
T Consensus        85 v~~~~~l~~a~~~m~~~~~~~lpVvd~  111 (213)
T 1vr9_A           85 VHEEDNITHALLLFLEHQEPYLPVVDE  111 (213)
T ss_dssp             EETTSBHHHHHHHHHHCCCSEEEEECT
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEEcC
Confidence            999999999999999999999999987

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.67  E-value=3.5e-16  Score=148.14  Aligned_cols=105  Identities=15%  Similarity=0.229  Sum_probs=92.9

Q ss_pred             cCcccccccc---cccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----Ccch
Q 018757           70 ELTEKTAKDA---MTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPL  141 (351)
Q Consensus        70 ~l~d~tV~dI---MtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~V  141 (351)
                      .+...+|+++   |++  +++++++++++. ++++.|.+++++++||++++ |+++|+|+.+|++++...+     ..++
T Consensus       183 ~~~~~~v~~~~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v  258 (323)
T 3t4n_C          183 HFLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSV  258 (323)
T ss_dssp             GGCCSBGGGTTCSBCT--TCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETTHHHHHHHTTHHHHTTSBH
T ss_pred             hhhhCcHHHcCCCCCC--CcEEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHHHHHHhhchhhhccCCH
Confidence            3556789999   763  778999999999 99999999999999999875 8999999999998765432     4589


Q ss_pred             hhhhcc------CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          142 RKMIIR------RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       142 ~dIM~r------~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++|.+      +++++++++++.++++.|.+++.+.+||+|+
T Consensus       259 ~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  301 (323)
T 3t4n_C          259 GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD  301 (323)
T ss_dssp             HHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECT
T ss_pred             HHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECC
Confidence            999887      7899999999999999999999999999997

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.66  E-value=4.2e-16  Score=158.06  Aligned_cols=131  Identities=10%  Similarity=0.174  Sum_probs=111.9

Q ss_pred             CCCHHHHHHHHHhcccccccCCCCC-----HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCC
Q 018757           34 LLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH  108 (351)
Q Consensus        34 ~~s~eEL~~LI~~~~~es~~~G~L~-----~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~  108 (351)
                      .++++||..++..    ++..|.|.     +++++++.+++.+     +++|++  +++++++++++. ++++.|.++++
T Consensus        54 ~vt~~eLa~av~~----~Gg~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           54 TVTGSKMAIAIAR----AGGLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             TTCSHHHHHHHHH----TTCEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             hccHHHHHHHHHH----cCCceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            5788899988873    33334444     6788899888764     679986  778999999999 99999999999


Q ss_pred             cEeeeee--CCCCcEEEEEEhhhhhcccccCCcchhhhhcc-CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          109 SRVPVYS--GNPTNIIGLILVKNLLSVDYRDAVPLRKMIIR-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       109 sriPVvd--~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r-~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++||++  ++ ++++|+|+.+||+... ....++.++|.+ +++++++++++.++++.|.+++.+.+||+|+
T Consensus       122 ~~~pVvd~~~~-~~lvGivt~~Dl~~~~-~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~  192 (491)
T 1zfj_A          122 SGVPIVETLAN-RKLVGIITNRDMRFIS-DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN  192 (491)
T ss_dssp             SEEEEESCTTT-CBEEEEEEHHHHHHCS-CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT
T ss_pred             CEEEEEEeCCC-CEEEEEEEHHHHhhhc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            9999998  54 8999999999998653 235789999887 8999999999999999999999999999998

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.65  E-value=7.8e-16  Score=157.58  Aligned_cols=132  Identities=11%  Similarity=0.182  Sum_probs=108.6

Q ss_pred             CCCCHHHHHHHHHhcccccccCCCCC-----HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757           33 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  107 (351)
Q Consensus        33 ~~~s~eEL~~LI~~~~~es~~~G~L~-----~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~  107 (351)
                      ..+|+++|...+...    +.-|.|.     +++.+++.+++.     ++++|++  +++++++++|+. +++++|.+++
T Consensus        76 dtvTe~~lAia~a~~----GgiGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~  143 (511)
T 3usb_A           76 DTVTEADMAIAMARQ----GGLGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYR  143 (511)
T ss_dssp             TTTCSHHHHHHHHHH----TCEEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHC
T ss_pred             hhhcHHHHHHHHHhc----CCceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcC
Confidence            457888997766532    2223332     556667888865     5577875  778999999999 9999999999


Q ss_pred             CcEeeeeeC--CCCcEEEEEEhhhhhcccccCCcchhhhhcc-CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          108 HSRVPVYSG--NPTNIIGLILVKNLLSVDYRDAVPLRKMIIR-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       108 ~sriPVvd~--~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r-~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++||+++  + ++++|+|+.+||+... ....+|.++|.+ +++++++++++.++++.|.+++.+.+||+|+
T Consensus       144 ~s~~pVvd~g~~-~~lvGiVt~rDl~~~~-~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe  215 (511)
T 3usb_A          144 ISGVPVVNNLDE-RKLVGIITNRDMRFIQ-DYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN  215 (511)
T ss_dssp             CSEEEEESCTTT-CBEEEEEEHHHHTTCC-CSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT
T ss_pred             CcEEEEEecCCC-CEEEEEEEehHhhhhc-cCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence            999999986  5 8999999999998632 236789999887 8999999999999999999999999999998

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.65  E-value=6.4e-16  Score=142.29  Aligned_cols=105  Identities=12%  Similarity=0.235  Sum_probs=92.8

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---Ccchhhhhc
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMII  146 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~~V~dIM~  146 (351)
                      ...+.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++.....   ..++.++|.
T Consensus        80 ~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~  155 (280)
T 3kh5_A           80 AAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAPIVNDE-NQLISLITERDVIRALLDKIDENEVIDDYIT  155 (280)
T ss_dssp             HHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHGGGSCTTCBSGGGCB
T ss_pred             HHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEEEEcCC-CEEEEEEEHHHHHHHHhhcCCCCCCHHHHhC
Confidence            3346799999986  778999999999 99999999999999999875 8999999999998764332   347999998


Q ss_pred             cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          147 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       147 r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++++++.++++.|.+++.+.+||+++
T Consensus       156 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~  187 (280)
T 3kh5_A          156 RDVIVATPGERLKDVARTMVRNGFRRLPVVSE  187 (280)
T ss_dssp             CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999999999999999999999944

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.65  E-value=4.4e-16  Score=145.72  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=93.3

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----------CCcc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------DAVP  140 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----------~~~~  140 (351)
                      ....+|+++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....          ...+
T Consensus       153 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  228 (296)
T 3ddj_A          153 DEIFPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKV  228 (296)
T ss_dssp             CCCCBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCB
T ss_pred             cccccHHHhhcC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHHhhcChhhhcCcC
Confidence            456799999985  678999999999 99999999999999999865 899999999999876431          2468


Q ss_pred             hhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          141 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       141 V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.++|.++++++++++++.+|++.|.+++.+.+||+|+
T Consensus       229 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~  266 (296)
T 3ddj_A          229 VKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK  266 (296)
T ss_dssp             HHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECC
Confidence            99999999999999999999999999999999999997

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.64  E-value=6.8e-17  Score=169.15  Aligned_cols=105  Identities=17%  Similarity=0.052  Sum_probs=91.8

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHH-HcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----C--------
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIM-TMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----A--------  138 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~-~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~--------  138 (351)
                      .+++|+|+|+|++++.++++++++. ++.+.|. +++++++||+|++ ++++|+|+.+|+++.....    .        
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            6789999999988999999999999 9999999 7999999999875 8999999999998754221    0        


Q ss_pred             ---------------------------------------cchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 ---------------------------------------VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ---------------------------------------~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                                             .++.++|.+++++|++++++.++++.|.+++.+++||+|+
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~  607 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTER  607 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEET
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEEC
Confidence                                                   0267889999999999999999999999999999999943

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.64  E-value=1.6e-15  Score=139.62  Aligned_cols=101  Identities=15%  Similarity=0.245  Sum_probs=87.7

Q ss_pred             cccc-ccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----------------
Q 018757           75 TAKD-AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----------------  137 (351)
Q Consensus        75 tV~d-IMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----------------  137 (351)
                      ++.+ +|++  +++++++++|+. +|++.|.+++++++||++++.++++|+++.+||+......                
T Consensus         4 ~v~~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T 3kh5_A            4 RVMKIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLA   80 (280)
T ss_dssp             BGGGTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHH
T ss_pred             hHHHHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhH
Confidence            4455 4553  788999999999 9999999999999999986458999999999998654211                


Q ss_pred             --CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 --AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 --~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                        ..+++++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~  123 (280)
T 3kh5_A           81 AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND  123 (280)
T ss_dssp             HTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT
T ss_pred             HhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC
Confidence              35789999889999999999999999999999999999987

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.63  E-value=5.5e-16  Score=142.22  Aligned_cols=102  Identities=17%  Similarity=0.243  Sum_probs=89.8

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----------------
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------------  136 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----------------  136 (351)
                      ..+|+++|++  ++.++++++++. +|++.|.+++++++||+|++ ++++|+|+.+|++++...                
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDN   81 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHH
Confidence            4689999985  678999999999 99999999999999999875 899999999999864311                


Q ss_pred             --------------------------------------------------------------------------------
Q 018757          137 --------------------------------------------------------------------------------  136 (351)
Q Consensus       137 --------------------------------------------------------------------------------  136 (351)
                                                                                                      
T Consensus        82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------CCcchhhhhc-cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          137 ---------------------DAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       137 ---------------------~~~~V~dIM~-r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                           ...+++++|. +++.++++++++.++++.|.+++.+.+||+|+
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~  225 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE  225 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT
T ss_pred             HcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC
Confidence                                 0235788988 89999999999999999999999999999998

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.63  E-value=9.2e-17  Score=163.93  Aligned_cols=132  Identities=15%  Similarity=0.245  Sum_probs=103.3

Q ss_pred             CCCCHHHHHHHHHhcccccccCCCC-----CHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757           33 VLLRRAELKTFVNFHGNEAGKGGDL-----THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  107 (351)
Q Consensus        33 ~~~s~eEL~~LI~~~~~es~~~G~L-----~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~  107 (351)
                      ..+|++++...+..    .+.-|.|     .+++++++.++     ++++++|++  +++++++++++. +++++|.+++
T Consensus        52 dtVTe~~ma~a~a~----~GGiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~~--d~v~v~~~~tv~-ea~~~m~~~~  119 (496)
T 4fxs_A           52 DTVTEARLAIALAQ----EGGIGFIHKNMSIEQQAAQVHQV-----KIFEAGVVT--HPVTVRPEQTIA-DVMELTHYHG  119 (496)
T ss_dssp             TTTCSHHHHHHHHH----HTCEEEECSSSCHHHHHHHHHHH-----HHCCC--CB--CCCCBCSSSBHH-HHHHHHTSSC
T ss_pred             chhhHHHHHHHHHH----cCCcceecCCCCHHHHHHHHHhc-----ccccccccc--CceEECCCCCHH-HHHHHHHHcC
Confidence            46889999887763    2234445     66788999998     456889984  778999999999 9999999999


Q ss_pred             CcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhc-c-CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          108 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-R-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       108 ~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~-r-~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++||++++ ++++|+|+.+||+... ....+|.++|. + +++++++++++.++++.|.+++.+.+||+|+
T Consensus       120 ~s~~PVvd~~-~~lvGiVt~rDL~~~~-~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe  190 (496)
T 4fxs_A          120 FAGFPVVTEN-NELVGIITGRDVRFVT-DLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND  190 (496)
T ss_dssp             CCEEEEECSS-SBEEEEEEHHHHTTCC-CTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECT
T ss_pred             CcEEEEEccC-CEEEEEEEHHHHhhcc-cCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence            9999999975 8999999999998543 23578999987 4 5999999999999999999999999999998

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.62  E-value=1.1e-15  Score=143.10  Aligned_cols=60  Identities=15%  Similarity=0.132  Sum_probs=53.6

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC-CCcEEEEEEhhhhhc
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLS  132 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~-~~~IVGIVt~kDLl~  132 (351)
                      ....++|+|||++  +++++.+++++. ++.++|.+++++++||++++ .++++|+|+.+||+.
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~   69 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEG   69 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHH
Confidence            3567899999985  789999999999 99999999999999999864 267999999999975

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.62  E-value=7.9e-16  Score=157.64  Aligned_cols=103  Identities=13%  Similarity=0.172  Sum_probs=89.7

Q ss_pred             CcccccccccccCcceEEEcCC-CCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhh
Q 018757           71 LTEKTAKDAMTPISKAFSLDLD-ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMI  145 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d-~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM  145 (351)
                      |.+.+|+++|++  +++++.++ +++. +++++|.+++++++||++++.++++|+|+.+||++....    ...+|.++|
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im  457 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL  457 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence            567899999985  77899999 9999 999999999999999998324899999999999865432    256899999


Q ss_pred             ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          146 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       146 ~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .+++++|++++++.+++++|.+++  ++||+|+
T Consensus       458 ~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~  488 (527)
T 3pc3_A          458 NKRVIRLNESEILGKLARVLEVDP--SVLILGK  488 (527)
T ss_dssp             ETTCCEEETTSBHHHHHHHHTTCS--EEEEEEE
T ss_pred             cCCCeEECCCCcHHHHHHHHhhCC--EEEEEeC
Confidence            999999999999999999997665  5799988

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.61  E-value=2.1e-15  Score=139.40  Aligned_cols=103  Identities=14%  Similarity=0.169  Sum_probs=90.3

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhh------cccc----------
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL------SVDY----------  135 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl------~~~~----------  135 (351)
                      .+.+++++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++      +...          
T Consensus       124 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  199 (282)
T 2yzq_A          124 KGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSEE  199 (282)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC-------------
T ss_pred             ccCcHHHHhCC--CCEEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHhhhhhhhhhhccchhhhhhhh
Confidence            46789999974  678999999999 99999999999999999865 7899999999998      4331          


Q ss_pred             ------------------cCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          136 ------------------RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       136 ------------------~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                        ....+++++|.++++++.+++++.+|++.|.+++.+.+||+|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  260 (282)
T 2yzq_A          200 EWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG  260 (282)
T ss_dssp             -------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             hhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECC
Confidence                              0146789999999999999999999999999999999999997

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.59  E-value=1.7e-15  Score=140.05  Aligned_cols=99  Identities=22%  Similarity=0.250  Sum_probs=71.5

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEec
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  153 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~  153 (351)
                      ++|+++|++  +++++++++++. +|++.|.+++++++||++++ ++++|+++.+|++....  ..+++++|.+++++++
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~--~~~v~~~m~~~~~~v~   74 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CchHHhccC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc--cCCHHHHcCCCCcEEC
Confidence            478999985  778899999999 99999999999999999864 89999999999987654  4579999888899999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          154 EDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       154 ~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++.+++..|.+++.+.+||+|+
T Consensus        75 ~~~~l~~a~~~m~~~~~~~~~Vvd~   99 (282)
T 2yzq_A           75 ENDTLKKAAKLMLEYDYRRVVVVDS   99 (282)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            9999999999999999999999997

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.58  E-value=1.3e-14  Score=138.05  Aligned_cols=103  Identities=8%  Similarity=0.179  Sum_probs=90.1

Q ss_pred             ccccccc---ccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----Ccchhh
Q 018757           72 TEKTAKD---AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRK  143 (351)
Q Consensus        72 ~d~tV~d---IMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~V~d  143 (351)
                      ...+|++   +|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....+     ..++.+
T Consensus       180 ~~~~v~~l~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~~  255 (334)
T 2qrd_G          180 LRVPLNQMTIGTWS--NLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGE  255 (334)
T ss_dssp             CCCBGGGSSCSBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETHHHHHHHTTSCGGGGGSBHHH
T ss_pred             hhCcHHHhCCcccC--CceEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHHHHhhccccccccCcHHH
Confidence            3578899   4874  678899999999 99999999999999999875 7899999999998754321     467899


Q ss_pred             hhcc------CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          144 MIIR------RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       144 IM~r------~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +|.+      +++++.+++++.++++.|.+++.+.+||+|+
T Consensus       256 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  296 (334)
T 2qrd_G          256 ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE  296 (334)
T ss_dssp             HHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECT
T ss_pred             HHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECC
Confidence            9874      8899999999999999999999999999997

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.57  E-value=4e-16  Score=159.38  Aligned_cols=133  Identities=11%  Similarity=0.102  Sum_probs=21.1

Q ss_pred             CCCCHHHHHHHHHhcccccccCCC----CC-HHHHHHHHHhhcCcccccccc-cccCcceEEEcCCCCchHHHHHHHHHc
Q 018757           33 VLLRRAELKTFVNFHGNEAGKGGD----LT-HDETTIIAGALELTEKTAKDA-MTPISKAFSLDLDATLTLDTLNAIMTM  106 (351)
Q Consensus        33 ~~~s~eEL~~LI~~~~~es~~~G~----L~-~~E~~mI~~~l~l~d~tV~dI-MtPr~~VvtV~~d~tv~~eal~~m~~~  106 (351)
                      ..+++++|...+...    +..|.    ++ +++++++.++..      .++ |++  +++++++++|+. +++++|.++
T Consensus        60 ~~vt~~~la~~la~~----gg~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~  126 (503)
T 1me8_A           60 QSVSGEKMAIALARE----GGISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRT  126 (503)
T ss_dssp             TTTCSHHHHHHHHHT----TCEEEECCSSCHHHHHHHHHHHHT------TTC----------------------------
T ss_pred             hhhhHHHHHHHHHhC----CCcceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHc
Confidence            356788998777631    11122    22 566778877654      345 986  788999999999 999999999


Q ss_pred             CCcEeeeeeCC--CCcEEEEEEhhhhhcccccCCcchhhhhccC--CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          107 GHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       107 ~~sriPVvd~~--~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~--v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++||++++  .++++|+|+.+||+........+|+++|.++  ++++++++++.+++++|.+++.+.+||+|+
T Consensus       127 ~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe  202 (503)
T 1me8_A          127 THNTVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD  202 (503)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CceEEEEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            99999999864  2789999999999863222356899998776  999999999999999999999999999998

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.55  E-value=6e-16  Score=157.67  Aligned_cols=131  Identities=12%  Similarity=0.221  Sum_probs=24.4

Q ss_pred             CCCCHHHHHHHHHhcccccccCCCCC-----HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcC
Q 018757           33 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG  107 (351)
Q Consensus        33 ~~~s~eEL~~LI~~~~~es~~~G~L~-----~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~  107 (351)
                      ..+|++++...+...    +..|.|.     +++++++.++.     +++++|++  +++++++++|+. +++++|.+++
T Consensus        51 ~tVTe~~lA~ala~~----GGiGvI~~~~~~e~~a~~v~~vk-----~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~  118 (490)
T 4avf_A           51 DTVTEARLAIAMAQE----GGIGIIHKNMGIEQQAAEVRKVK-----KHETAIVR--DPVTVTPSTKII-ELLQMAREYG  118 (490)
T ss_dssp             TTTCSHHHHHHHHHH----TSEEEECCSSCHHHHHHHHHHHH-----HCCC-----------------------------
T ss_pred             hhhCHHHHHHHHHHc----CCCccccCCCCHHHHHHHhhhhc-----ccccCccc--CceEeCCCCcHH-HHHHHHHHhC
Confidence            457889999777632    2234444     66678888774     46889984  778999999999 9999999999


Q ss_pred             CcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhc-c-CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          108 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-R-RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       108 ~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~-r-~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++||++ + ++++|+|+.+||.... ....+|.++|. + +++++++++++.+++++|.+++.+.+||+|+
T Consensus       119 ~s~~pVvd-~-g~lvGIVt~rDl~~~~-~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe  188 (490)
T 4avf_A          119 FSGFPVVE-Q-GELVGIVTGRDLRVKP-NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE  188 (490)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             CCEEEEEE-C-CEEEEEEEhHHhhhcc-ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            99999998 4 7999999999997433 23578999987 4 6999999999999999999999999999998

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.54  E-value=9.1e-16  Score=155.92  Aligned_cols=128  Identities=13%  Similarity=0.232  Sum_probs=23.9

Q ss_pred             CCCHHHHHHHHHhcccccccCCCCC-----HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCC
Q 018757           34 LLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGH  108 (351)
Q Consensus        34 ~~s~eEL~~LI~~~~~es~~~G~L~-----~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~  108 (351)
                      .++.+|+...+..    .+..|.|.     +++++++.+++.+.     ++|+.  +++++++++++. ++++.|.++++
T Consensus        57 ~vt~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~v~~~~-----~~m~~--~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMAR----EGGLGVIHRNMGIEEQVEQVKRVKRAE-----RLIVE--DVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHH----TTCEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred             eecHHHHHHHHHh----cCCceeecCCCCHHHHHHHHHhhcchh-----hcccc--CceEECCCCCHH-HHHHHHHHcCC
Confidence            5677889887763    22233443     57789999998864     47874  889999999999 99999999999


Q ss_pred             cEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          109 SRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       109 sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++||+++  ++++|+|+.+||+.   ....++.++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus       125 ~~~pVvd~--~~lvGivt~~Dl~~---~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde  189 (486)
T 2cu0_A          125 DGLPVVED--EKVVGIITKKDIAA---REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDE  189 (486)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cEEEEEEC--CEEEEEEEHHHhcc---CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec
Confidence            99999986  78999999999986   2356899998888999999999999999999999999999998

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.53  E-value=5.3e-14  Score=133.72  Aligned_cols=102  Identities=14%  Similarity=0.190  Sum_probs=87.9

Q ss_pred             cccccc--cccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----Ccchhhhh-
Q 018757           74 KTAKDA--MTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMI-  145 (351)
Q Consensus        74 ~tV~dI--MtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~V~dIM-  145 (351)
                      .+++++  |+ ..+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++......     ..++.++| 
T Consensus       190 ~~v~~~~v~~-~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~  266 (330)
T 2v8q_E          190 KSLEELQIGT-YANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQ  266 (330)
T ss_dssp             SBHHHHTCSB-CSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGG
T ss_pred             CCHHHhcccC-cCCceEECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEHHHHHHHHhccccccccCcHHHHHh
Confidence            455665  54 14678999999999 99999999999999999865 8899999999999876432     46788887 


Q ss_pred             -----ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          146 -----IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       146 -----~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                           .++++++++++++.+++..|.+++.+.+||+|+
T Consensus       267 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~  304 (330)
T 2v8q_E          267 HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE  304 (330)
T ss_dssp             GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             ccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcC
Confidence                 478999999999999999999999999999997

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.39  E-value=5.2e-14  Score=142.99  Aligned_cols=112  Identities=9%  Similarity=0.190  Sum_probs=8.0

Q ss_pred             CCH-HHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           57 LTH-DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        57 L~~-~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ++. +.++.+.+++.     ++++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+||+... 
T Consensus        82 ~~~e~~~~~v~~v~~-----~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~~-  151 (494)
T 1vrd_A           82 LTPDEQARQVSIVKK-----TENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFEK-  151 (494)
T ss_dssp             SCHHHHHHHHHHHHT-----C-----------------------------------------------------------
T ss_pred             CChHHHHHHHHhhhh-----HhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhhc-
Confidence            444 34556666654     5788985  788999999999 99999999999999999875 7899999999998642 


Q ss_pred             cCCcchhhhhcc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          136 RDAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       136 ~~~~~V~dIM~r--~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ....++.++|.+  +++++++++++.++++.|.+++.+.+||+|+
T Consensus       152 ~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~  196 (494)
T 1vrd_A          152 NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK  196 (494)
T ss_dssp             ---------------------------------------------
T ss_pred             CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC
Confidence            235689999887  8999999999999999999999999999998

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.28  E-value=6.3e-13  Score=135.43  Aligned_cols=110  Identities=12%  Similarity=0.257  Sum_probs=10.3

Q ss_pred             HHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC--CCcEEEEEEhhhhhccccc
Q 018757           59 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR  136 (351)
Q Consensus        59 ~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~--~~~IVGIVt~kDLl~~~~~  136 (351)
                      ++|.+++..+-.+..     .|.  .+.+++.++.|+. +++++|.+++++.+||+++.  .++++|||+.+|+...  .
T Consensus       128 e~Qa~~V~~VKr~e~-----g~i--~dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d  197 (556)
T 4af0_A          128 EEQAAMVRRVKKYEN-----GFI--TDPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D  197 (556)
T ss_dssp             HHHHHHHHHHHHCCC-----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhccc-----Ccc--CCCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c
Confidence            456788888866553     454  2668999999999 99999999999999999853  3789999999998754  3


Q ss_pred             CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          137 DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       137 ~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ...+|+++|..+++++++..++++|.++|.++++..+||||+
T Consensus       198 ~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~  239 (556)
T 4af0_A          198 AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS  239 (556)
T ss_dssp             ------------------------------------------
T ss_pred             cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEcc
Confidence            357899999999999999999999999999999999999998

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.25  E-value=1.5e-13  Score=140.48  Aligned_cols=103  Identities=14%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC--CCcEEEEEEhhhhhcccc-cCCcchhhhhcc--CC
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDY-RDAVPLRKMIIR--RI  149 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~--~~~IVGIVt~kDLl~~~~-~~~~~V~dIM~r--~v  149 (351)
                      ++.++|++  +++++++++++. +++++|.+++++.+||++++  .++++|+|+.+|+..... ....++.++|.+  ++
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~~  185 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIEL  185 (514)
T ss_dssp             TCCTTSCS--SCCCCCC------------------CEESCC--------CCEECTTTTC----------------CCBCC
T ss_pred             hhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCCC
Confidence            68899985  677899999999 99999999999999999863  378999999999986421 225689999887  89


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKDLN  180 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe~G  180 (351)
                      +++++++++.++++.|.+++.+.+||+|+.|
T Consensus       186 ~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g  216 (514)
T 1jcn_A          186 VVAPAGVTLKEANEILQRSKKGKLPIVNDCD  216 (514)
T ss_dssp             CCEETTCCSTTTTTHHHHHTCSCCCEESSSS
T ss_pred             eEECCCCCHHHHHHHHHHcCCCcccEECCCC
Confidence            9999999999999999999999999999843

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.97  E-value=9e-10  Score=83.27  Aligned_cols=65  Identities=14%  Similarity=0.268  Sum_probs=55.2

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcchhhhhccCCcEe
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRV  152 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V~dIM~r~v~~V  152 (351)
                      +++++++++|+. +|+++|.+++++++||+++  ++++|||+.+||++....     ...+++++|.+++++|
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            367999999999 9999999999999999985  689999999999754321     2468999999988765

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.71  E-value=9.7e-09  Score=92.48  Aligned_cols=103  Identities=12%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCc-E
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP-R  151 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~-~  151 (351)
                      +.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++...... ..+.+.|.+-.+ +
T Consensus        71 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~-~~~~~~~~~l~~~~  145 (213)
T 1vr9_A           71 DSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEA-LAMDVPGIRFSVLL  145 (213)
T ss_dssp             TSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHS-CC------------
T ss_pred             CCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHH-hcCCCCcEEEEEEe
Confidence            4469999986  678999999999 99999999999999999875 8999999999999765432 123333322111 1


Q ss_pred             ecCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 018757          152 VSEDMPLYDILNEFQKGHSHIAVVYKDLN  180 (351)
Q Consensus       152 V~~~~~L~daL~~m~~~~~~~apVVDe~G  180 (351)
                      .....++.++++.|.+++.+.++|++..|
T Consensus       146 ~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          146 EDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             -----------------------------
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence            13345699999999999999999987633

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.47  E-value=9.6e-08  Score=82.25  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=39.2

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +.+|+++|.+++++|.+++++.+|++.|.+++++.+||+|+
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~   57 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ   57 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC
Confidence            46899999999999999999999999999999999999998

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.39  E-value=1.8e-07  Score=85.29  Aligned_cols=61  Identities=20%  Similarity=0.246  Sum_probs=50.5

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      ....+|+++|+| .+++++++++++. ++++.|.+++++++||+|++ |+++|+|+.+|++++.
T Consensus       182 ~~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          182 VQSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRYSNYPVIDEN-NKVVGSIARFHLISTH  242 (245)
T ss_dssp             GGGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEECC------
T ss_pred             hcCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCCceEEEEcCC-CeEEEEEEHHHhhchh
Confidence            346789999997 6888999999999 99999999999999999876 8999999999998764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.34  E-value=8.1e-07  Score=66.84  Aligned_cols=30  Identities=13%  Similarity=0.092  Sum_probs=28.5

Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          149 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       149 v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++|.+++++.+|+++|.+++++.+||+|+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~   31 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG   31 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence            578999999999999999999999999987

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.29  E-value=1e-06  Score=70.64  Aligned_cols=60  Identities=17%  Similarity=0.249  Sum_probs=53.1

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ...+++++|.+  ++.++++++++. ++++.|.+++++++||++++ |+++|+|+.+|++++..
T Consensus        60 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           60 NKKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYNISGVPVVDDY-RRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             TCCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHC
T ss_pred             cccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCeEEEECCC-CCEEEEEeHHHHHHHhh
Confidence            44589999986  667899999999 99999999999999999875 89999999999987653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.27  E-value=7.3e-07  Score=75.18  Aligned_cols=61  Identities=16%  Similarity=0.268  Sum_probs=54.5

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  136 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~  136 (351)
                      ..+.+|+++|++  ++.++++++++. ++++.|.+++++++||++ + |+++|+|+.+||+++...
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHT
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence            457899999986  678899999999 999999999999999998 4 899999999999987543

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.25  E-value=9.9e-07  Score=74.86  Aligned_cols=78  Identities=17%  Similarity=0.244  Sum_probs=62.4

Q ss_pred             CCCCCHHHHHHHHHhh---cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCC---cEEEEEEh
Q 018757           54 GGDLTHDETTIIAGAL---ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT---NIIGLILV  127 (351)
Q Consensus        54 ~G~L~~~E~~mI~~~l---~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~---~IVGIVt~  127 (351)
                      .|.++..  +++..++   ...+.+|+++|+++.+++++++++++. ++++.|.+++++++||++++ +   +++|+|+.
T Consensus        60 ~Givt~~--dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~  135 (159)
T 3fv6_A           60 VGVLSRK--DLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTK  135 (159)
T ss_dssp             EEEEEHH--HHHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEH
T ss_pred             EEEEeHH--HHHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEH
Confidence            4556533  3333332   356789999999766788999999999 99999999999999999875 6   89999999


Q ss_pred             hhhhcccc
Q 018757          128 KNLLSVDY  135 (351)
Q Consensus       128 kDLl~~~~  135 (351)
                      +||+++..
T Consensus       136 ~dil~~l~  143 (159)
T 3fv6_A          136 TNMTKILV  143 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.24  E-value=2.5e-06  Score=71.21  Aligned_cols=41  Identities=12%  Similarity=0.127  Sum_probs=38.4

Q ss_pred             Ccchhhhhcc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r--~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.+  +++++++++++.+|++.|.+++.+.+||+|+
T Consensus        22 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~   64 (148)
T 3lv9_A           22 EKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK   64 (148)
T ss_dssp             TCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS
T ss_pred             CCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC
Confidence            5689999987  8999999999999999999999999999987

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.22  E-value=8.6e-07  Score=71.32  Aligned_cols=61  Identities=20%  Similarity=0.281  Sum_probs=54.3

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      .+.+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  |+++|+|+.+|++.+..
T Consensus        61 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           61 DLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKM  121 (125)
T ss_dssp             CTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC
T ss_pred             cccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            3467899999986  677999999999 9999999999999999986  78999999999987653

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.20  E-value=1e-06  Score=71.91  Aligned_cols=59  Identities=20%  Similarity=0.352  Sum_probs=52.9

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      +.+++++|++  ++.++++++++. ++++.|.+++++++||++++ |+++|+|+.+|++....
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           66 ETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITRAID  124 (133)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             ccCHHHHcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHH
Confidence            5789999985  677899999999 99999999999999999865 89999999999987653

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.19  E-value=3.1e-06  Score=69.45  Aligned_cols=41  Identities=12%  Similarity=0.177  Sum_probs=38.2

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.++++++++++++.+|+..|.+++.+.+||+|+
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~   46 (138)
T 2yzi_A            6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND   46 (138)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            35789999899999999999999999999999999999986

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.19  E-value=3.5e-06  Score=70.55  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             cchhhhhcc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~dIM~r--~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .+++++|.+  +++++++++++.++++.|.+++.+.+||+|+
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~   69 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD   69 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC
Confidence            479999888  8999999999999999999999999999997

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.19  E-value=2.1e-06  Score=71.01  Aligned_cols=60  Identities=15%  Similarity=0.133  Sum_probs=52.9

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ....+++++|++   +.++++++++. ++++.|.+++...+||++++ |+++|+|+.+|+++...
T Consensus        67 ~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           67 GDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDEY-GGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHTTC-
T ss_pred             CCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHHh
Confidence            356789999974   67899999999 99999999999999999875 89999999999998754

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.18  E-value=2.9e-06  Score=79.03  Aligned_cols=41  Identities=7%  Similarity=0.235  Sum_probs=39.0

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ...++++|.+++++|.+++++.+|+++|.+++++.+||||+
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~   52 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT   52 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec
Confidence            46799999999999999999999999999999999999987

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.18  E-value=2.1e-06  Score=70.31  Aligned_cols=60  Identities=25%  Similarity=0.419  Sum_probs=53.8

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ..+.+|+++|++  ++.++++++++. ++++.|.+++++++||++ + |+++|+|+.+|++.+..
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHHH
Confidence            467899999986  678899999999 999999999999999998 4 89999999999987653

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.18  E-value=3.1e-06  Score=69.93  Aligned_cols=58  Identities=16%  Similarity=0.185  Sum_probs=52.3

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .+.+++++|++  ++.+++++ ++. ++++.|.++++.++||++++ |+++|+|+.+||+++.
T Consensus        69 ~~~~v~~~m~~--~~~~v~~~-~l~-~a~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dll~~~  126 (141)
T 2rih_A           69 LDGPAMPIANS--PITVLDTD-PVH-VAAEKMRRHNIRHVVVVNKN-GELVGVLSIRDLCFER  126 (141)
T ss_dssp             TTSBSGGGCBC--CCEEETTS-BHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHSCH
T ss_pred             CCCCHHHHcCC--CCeEEcCC-CHH-HHHHHHHHcCCeEEEEEcCC-CcEEEEEEHHHHHHHH
Confidence            36789999985  77899999 999 99999999999999999865 8999999999999764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.17  E-value=3.3e-06  Score=71.80  Aligned_cols=41  Identities=10%  Similarity=0.082  Sum_probs=38.0

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.++++++++++++.+|+..|.+++.+.+||+|+
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~   44 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA   44 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            35789999889999999999999999999999999999987

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.17  E-value=4.1e-06  Score=72.26  Aligned_cols=75  Identities=12%  Similarity=0.132  Sum_probs=60.0

Q ss_pred             CCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           54 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        54 ~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      .|.++.  ++++.....-...+|+++| +  +++++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++.+
T Consensus        89 vGivt~--~dl~~~~~~~~~~~v~~im-~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dil~~  161 (172)
T 3lhh_A           89 VGIISA--KQLLSESIAGERLELVDLV-K--NCNFVPNSLSGM-ELLEHFRTTGSQMVFVVDEY-GDLKGLVTLQDMMDA  161 (172)
T ss_dssp             EEEEEH--HHHHHHHHTTCCCCGGGGC-B--CCEEEETTCCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHH
T ss_pred             EEEEEH--HHHHHHHhhcCcccHHHHh-c--CCeEeCCCCCHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEeeHHHHHHH
Confidence            355654  3344444433477899999 3  678999999999 99999999999999999875 899999999999976


Q ss_pred             cc
Q 018757          134 DY  135 (351)
Q Consensus       134 ~~  135 (351)
                      ..
T Consensus       162 l~  163 (172)
T 3lhh_A          162 LT  163 (172)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.15  E-value=4.1e-06  Score=72.83  Aligned_cols=61  Identities=15%  Similarity=0.156  Sum_probs=54.7

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ....+|+++|++  .++++++++++. ++++.|.+++++++||++++ ++++|+|+.+||+++..
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           72 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSC
T ss_pred             cccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            457789999985  678999999999 99999999999999999875 88999999999998654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.15  E-value=3e-06  Score=71.37  Aligned_cols=75  Identities=13%  Similarity=0.085  Sum_probs=59.3

Q ss_pred             CCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           54 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        54 ~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      .|.++..+  ++.....-...+|+++| +  ++.++++++++. ++++.|.+++..++||++++ |+++|+|+..|++..
T Consensus        68 vGivt~~d--l~~~~~~~~~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~~  140 (153)
T 3oco_A           68 IGYAYNYD--IVRQARIDDKAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYEE  140 (153)
T ss_dssp             EEEEEHHH--HHHHHHHHTTSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHHH
T ss_pred             EEEEEHHH--HHhHHhcCCCCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHHH
Confidence            35565433  33332222378899999 3  678999999999 99999999999999999875 899999999999976


Q ss_pred             cc
Q 018757          134 DY  135 (351)
Q Consensus       134 ~~  135 (351)
                      ..
T Consensus       141 l~  142 (153)
T 3oco_A          141 LF  142 (153)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.15  E-value=2.3e-06  Score=70.10  Aligned_cols=58  Identities=16%  Similarity=0.147  Sum_probs=51.4

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .+.+++++|++   ++++++++++. ++++.|.+++..++||++++ |+++|+|+.+|+++..
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~-g~~~Giit~~Dil~~l  124 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRNHLAIVIDEH-GGISGLVTMEDVLEQI  124 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHH
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            56789999964   67899999999 99999999999999999875 8999999999999764

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.14  E-value=1.4e-06  Score=72.24  Aligned_cols=61  Identities=21%  Similarity=0.394  Sum_probs=53.2

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ....+|+++|++  .++++++++++. ++++.|.+++++++||++++ |+++|+|+.+||++...
T Consensus        82 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           82 TNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             --CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             hccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEEHHHHHHHHH
Confidence            346789999986  567899999999 99999999999999999865 89999999999998654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.11  E-value=4.8e-06  Score=67.75  Aligned_cols=41  Identities=12%  Similarity=0.058  Sum_probs=38.7

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.++++++++++++.+|++.|.+++.+.+||+|+
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~   44 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG   44 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC
Confidence            46799999999999999999999999999999999999987

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.10  E-value=3e-06  Score=71.57  Aligned_cols=60  Identities=20%  Similarity=0.330  Sum_probs=53.5

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ....+|+++|++   ++++++++++. ++++.|.++++.++||++++ ++++|+|+.+||++...
T Consensus        93 ~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           93 LIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILLALW  152 (157)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             HcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcCC-CEEEEEEEHHHHHHHHH
Confidence            467789999985   67899999999 99999999999999999865 89999999999987653

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.10  E-value=3.9e-06  Score=69.96  Aligned_cols=41  Identities=15%  Similarity=0.149  Sum_probs=37.4

Q ss_pred             Ccchhhhhc--cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~--r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.  ++++++++++++.+|++.|.+++.+.+||+|+
T Consensus        14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~   56 (150)
T 3lqn_A           14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP   56 (150)
T ss_dssp             HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence            357999988  56999999999999999999999999999987

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.10  E-value=2.8e-06  Score=69.17  Aligned_cols=58  Identities=10%  Similarity=0.132  Sum_probs=51.7

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .+.+++++|++   +.++++++++. ++++.|.+++..++||++++ |+++|+|+..|+++..
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTCCEEEEECTT-SCEEEEEEHHHHHHHC
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            56789999964   46899999999 99999999999999999875 8999999999998764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.10  E-value=5.2e-06  Score=71.07  Aligned_cols=39  Identities=5%  Similarity=-0.039  Sum_probs=35.6

Q ss_pred             chhhhhc--cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~--r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++++|.  .++.+|.+++++.+|+..|.+++...+||+|+
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~   56 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD   56 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC
Confidence            5778876  47899999999999999999999999999987

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.09  E-value=4.3e-06  Score=71.33  Aligned_cols=62  Identities=15%  Similarity=0.216  Sum_probs=55.1

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  136 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~  136 (351)
                      ...+.+|+++|++  ++.++++++++. ++++.|.+++++++||+++  |+++|+|+.+||+.+...
T Consensus        89 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           89 ASLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             GGGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTTC
T ss_pred             ccccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            4567899999985  678899999999 9999999999999999987  799999999999987643

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.09  E-value=5.7e-06  Score=67.70  Aligned_cols=41  Identities=7%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~   47 (138)
T 2p9m_A            7 NIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD   47 (138)
T ss_dssp             TCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT
T ss_pred             cCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC
Confidence            35789999889999999999999999999999999999987

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.09  E-value=2.6e-06  Score=72.86  Aligned_cols=62  Identities=21%  Similarity=0.374  Sum_probs=54.7

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      .....+|+++|++  .++++++++++. ++++.|.++++.++||++++ |+++|+|+.+||++...
T Consensus        94 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~~~~  155 (180)
T 3sl7_A           94 KTYGKVVGDLMTP--SPLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILTRGNVVRAAL  155 (180)
T ss_dssp             TTTTCBHHHHSEE--SCCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEEHHHHHHHHH
T ss_pred             ccccccHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHH
Confidence            3457789999986  567899999999 99999999999999999865 89999999999997653

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.08  E-value=4.8e-06  Score=68.10  Aligned_cols=58  Identities=14%  Similarity=0.178  Sum_probs=51.7

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .+.+++++|+   ++.++++++++. ++++.|.+++..++||++++ |+++|+|+..|++++.
T Consensus        70 ~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           70 GQKQLGAVMR---PIQVVLNNTALP-KVFDQMMTHRLQLALVVDEY-GTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             TTSBHHHHSE---ECCEEETTSCHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             CcCCHHHHhc---CCcCcCCCCcHH-HHHHHHHHcCCeEEEEEcCC-CCEEEEEEHHHHHHHH
Confidence            4678999996   367899999999 99999999999999999875 8999999999998764

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.05  E-value=2.9e-06  Score=69.17  Aligned_cols=60  Identities=20%  Similarity=0.296  Sum_probs=53.4

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  |+++|+|+.+|+++...
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           71 PNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             TTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC
T ss_pred             ccccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            356789999986  677899999999 9999999999999999986  78999999999997653

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.05  E-value=4.3e-06  Score=68.73  Aligned_cols=59  Identities=17%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ...+++++|.   ++.++++++++. ++++.|.+++...+||++++ |+++|+|+.+|++++..
T Consensus        68 ~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           68 TKEIMLRAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             CHHHHHHHSB---CCCEEETTCBHH-HHHHHHHHHCCCEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             chhhHHHhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEcCC-CCEEEEeeHHHHHHHHh
Confidence            3467899994   457899999999 99999999999999999875 89999999999997653

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.05  E-value=6.8e-06  Score=69.39  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=37.9

Q ss_pred             Ccchhhhhcc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r--~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.+  +++++++++++.+|++.|.+++.+.+||+|+
T Consensus        13 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~   55 (159)
T 1yav_A           13 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP   55 (159)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT
T ss_pred             HhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC
Confidence            3578999877  8999999999999999999999999999987

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.01  E-value=7.3e-06  Score=68.68  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=37.6

Q ss_pred             Ccchhhhhcc--CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r--~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.+  +++++++++++.+|+..|.+++.+.+||+|+
T Consensus        10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~   52 (157)
T 2emq_A           10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT   52 (157)
T ss_dssp             CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT
T ss_pred             hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC
Confidence            4578999876  8899999999999999999999999999987

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.00  E-value=1.2e-05  Score=65.96  Aligned_cols=40  Identities=10%  Similarity=0.350  Sum_probs=36.2

Q ss_pred             cchhh---hhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRK---MIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~d---IM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++++   +|.++++++++++++.+|++.|.+++.+.+||+|+
T Consensus         8 ~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~   50 (144)
T 2nyc_A            8 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE   50 (144)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             cchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC
Confidence            45666   77788999999999999999999999999999987

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.00  E-value=1.2e-05  Score=67.50  Aligned_cols=41  Identities=12%  Similarity=0.226  Sum_probs=38.3

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.++++++++++++.+|++.|.+++.+.+||+|+
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~   52 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES   52 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec
Confidence            46799999999999999999999999999999999999985

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.00  E-value=6.1e-06  Score=69.94  Aligned_cols=56  Identities=16%  Similarity=0.195  Sum_probs=50.3

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS  132 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~  132 (351)
                      .+.+++++|++   ++++++++++. ++++.|.+++...+||++++ |+++|+|+.+|++.
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-g~~~Givt~~Dile  156 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDEY-GGTSGLVTFEDIIE  156 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECTT-SSEEEEEEHHHHCC
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECCC-CCEEEEEEHHHhcC
Confidence            46789999974   67899999999 99999999999999999875 89999999999863

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.97  E-value=5.8e-06  Score=74.12  Aligned_cols=61  Identities=16%  Similarity=0.220  Sum_probs=54.5

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ..+.+|+++|++  +++++++++++. ++++.|.++++..+||+|++ |+++|+|+..|++....
T Consensus       113 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          113 EPHEPLISLLSE--DSRALTANTTLL-DAAEAIEHSREIELPVIDDA-GELIGRVTLRAATALVR  173 (205)
T ss_dssp             CTTSBGGGGCCS--SCCCEETTSCHH-HHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             CCcchHHHHhcC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            356789999975  678999999999 99999999999999999875 89999999999997654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.97  E-value=3.3e-06  Score=86.07  Aligned_cols=100  Identities=15%  Similarity=0.225  Sum_probs=20.0

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCC--
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI--  149 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v--  149 (351)
                      .+.+|+++|++..+++++++++++. +++++|.++++..+||+|++ ++++|+|+.+||++...... ...+.+.+-.  
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~-~~~d~~~~l~v~  235 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHN-ELVDSQKRYLVG  235 (503)
T ss_dssp             -----------------------------------------------------------------CC-CCBCTTSCBCCE
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhccc-chhccccccccc
Confidence            4567999999755589999999999 99999999999999999976 89999999999998754321 1222211111  


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEE
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVV  175 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apV  175 (351)
                      ..+.. ....+.+..|.+.+.+++.|
T Consensus       236 a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          236 AGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             EEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             cccCc-hhHHHHHHHHHhhhccceEE
Confidence            23444 66777788898889987544

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=97.93  E-value=1.9e-05  Score=68.68  Aligned_cols=41  Identities=12%  Similarity=0.152  Sum_probs=37.4

Q ss_pred             Ccchhhhhc--cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~--r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+++++|.  ++++++++++++.+++..|.+++...+||+|+
T Consensus        35 ~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~   77 (173)
T 3ocm_A           35 ERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG   77 (173)
T ss_dssp             TSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS
T ss_pred             CCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC
Confidence            568999986  46889999999999999999999999999987

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.91  E-value=1.7e-05  Score=68.12  Aligned_cols=40  Identities=13%  Similarity=0.044  Sum_probs=35.9

Q ss_pred             CcchhhhhccC----CcEe--cCCCCHHHHHHHHHhCCCcEEEEEe
Q 018757          138 AVPLRKMIIRR----IPRV--SEDMPLYDILNEFQKGHSHIAVVYK  177 (351)
Q Consensus       138 ~~~V~dIM~r~----v~~V--~~~~~L~daL~~m~~~~~~~apVVD  177 (351)
                      ..+++++|.+.    ++++  ++++++.+|++.|.+++.+.+||++
T Consensus        10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~   55 (185)
T 2j9l_A           10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVV   55 (185)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEES
T ss_pred             cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEE
Confidence            45799998776    7888  9999999999999999999999993

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.85  E-value=3.4e-05  Score=78.83  Aligned_cols=104  Identities=15%  Similarity=0.144  Sum_probs=79.0

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP  150 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~  150 (351)
                      -.+.+|+++|++ .++++++++.++. +++++|.+++...+||+|++ ++++|+|+.+|+++..... ..+.+.+.+-.+
T Consensus       172 ~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p-~a~~D~~~rl~V  247 (511)
T 3usb_A          172 DYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFP-NSAKDKQGRLLV  247 (511)
T ss_dssp             CSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCT-TCCBCTTSCBCC
T ss_pred             cCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhcc-cchhhhccceee
Confidence            356789999996 5778999999999 99999999999999999976 8999999999999865432 233344333333


Q ss_pred             --EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 --RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 --~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                        .+.......+.+..+.+.+...+.|...
T Consensus       248 ~aavg~~~d~~era~aLveaGvd~I~Id~a  277 (511)
T 3usb_A          248 GAAVGVTADAMTRIDALVKASVDAIVLDTA  277 (511)
T ss_dssp             EEEECSSTTHHHHHHHHHHTTCSEEEEECS
T ss_pred             eeeeeeccchHHHHHHHHhhccceEEeccc
Confidence              2444445567778888889987766544

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.76  E-value=2e-05  Score=73.48  Aligned_cols=61  Identities=16%  Similarity=0.303  Sum_probs=54.0

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ..+.+|+++|++  +++++++++++. ++++.|.++++..+||++++ |+++|+|+..|++....
T Consensus       196 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          196 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             CTTCBSTTTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC-
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHH
Confidence            357789999975  678999999999 99999999999999999875 89999999999997654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.71  E-value=4.1e-05  Score=78.11  Aligned_cols=40  Identities=8%  Similarity=0.130  Sum_probs=37.8

Q ss_pred             CcchhhhhccCCcEecCC-CCHHHHHHHHHhCCCcEEEEEe
Q 018757          138 AVPLRKMIIRRIPRVSED-MPLYDILNEFQKGHSHIAVVYK  177 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~-~~L~daL~~m~~~~~~~apVVD  177 (351)
                      ..+|+++|.++++++.++ +++.++++.|.+++...+||+|
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd  423 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD  423 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEE
Confidence            367999999999999999 9999999999999999999999

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.66  E-value=2.8e-05  Score=73.06  Aligned_cols=61  Identities=16%  Similarity=0.294  Sum_probs=54.3

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ..+.+|+++|++  +++++++++++. ++++.|.++++.++||++++ |+++|+|+..|++....
T Consensus       198 ~~~~~v~~im~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          198 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHH
T ss_pred             CCCCcHHHHcCC--CCeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            357789999985  678999999999 99999999999999999875 89999999999997653

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.50  E-value=7.1e-05  Score=78.15  Aligned_cols=57  Identities=5%  Similarity=-0.028  Sum_probs=49.4

Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  136 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~  136 (351)
                      +|+++|++  +++++++++++. ++++.|.+++..++||+ ++ |+++|+|+.+|+++...+
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~-ea~~~M~~~~i~~lpVv-e~-G~lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVR-QLHFLFVMLMPSMIYVT-ER-GKLVGIVEREDVAYGYSN  625 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHH-HHHHHHHHTCCSEEEEE-ET-TEEEEEEEGGGTEECCCC
T ss_pred             ccchhhcC--CCceecCCCcHH-HHHHHHHhcCCCEEEEE-EC-CEEEEEEehhhHHHHHhh
Confidence            48999986  667999999999 99999999999999999 43 789999999999987643

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.48  E-value=7e-05  Score=76.07  Aligned_cols=102  Identities=13%  Similarity=0.088  Sum_probs=15.6

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccC--C
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--I  149 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~--v  149 (351)
                      .+.+|+++|+|+.+++++++++++. +++++|.+++...+||+|++ ++++|+|+.+|+++...... ...+.--+-  .
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~p~-a~kd~~grl~v~  221 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENRIEKMLVVDEN-FYLRGLVTFRDIEKAKTYPL-ASKDEQGRLRVG  221 (490)
T ss_dssp             ----------------------------------------------------------------CTT-CCBCTTSCBCCE
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHhhhhccCcc-hhhhccCcceee
Confidence            3567999999755688999999999 99999999999999999975 89999999999998643211 111110010  1


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEe
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYK  177 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVD  177 (351)
                      ..+.......+.+..+.+.+...+ ++|
T Consensus       222 aavG~~~~~~~~a~~l~~aG~d~I-~id  248 (490)
T 4avf_A          222 AAVGTGADTGERVAALVAAGVDVV-VVD  248 (490)
T ss_dssp             EEECSSTTHHHHHHHHHHTTCSEE-EEE
T ss_pred             eeeccccchHHHHHHHhhcccceE-Eec
Confidence            123333344555666666777644 444

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.44  E-value=0.00011  Score=74.24  Aligned_cols=61  Identities=16%  Similarity=0.303  Sum_probs=54.6

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      -.+.+++++|++  +++++++++++. ++++.|.+++...+||+|++ |+++|+|+.+|++....
T Consensus       216 ~~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          216 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             CTTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHHH
Confidence            357789999975  678999999999 99999999999999999875 89999999999997653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.30  E-value=0.00012  Score=73.92  Aligned_cols=99  Identities=22%  Similarity=0.309  Sum_probs=22.0

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCc--
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP--  150 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~--  150 (351)
                      +.+|+++|+++.+++++++++++. +++++|.++++..+||+|++ ++++|+|+.+|+++..... ...++. ...+.  
T Consensus       154 ~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~~~~-~~~~D~-~~~l~vg  229 (494)
T 1vrd_A          154 SKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSKD-NKLVGLITIKDIMSVIEHP-NAARDE-KGRLLVG  229 (494)
T ss_dssp             ---------------------------------------------------------CHHHHTCT-TCCBCT-TSCBCCE
T ss_pred             CCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHhhhccc-cccccc-hhhhccc
Confidence            467999999755788999999999 99999999999999999875 8999999999999765321 111121 11111  


Q ss_pred             -EecCCCCHHHHHHHHHhCCCcEEEE
Q 018757          151 -RVSEDMPLYDILNEFQKGHSHIAVV  175 (351)
Q Consensus       151 -~V~~~~~L~daL~~m~~~~~~~apV  175 (351)
                       -+.......+.+..+.+.+...+.+
T Consensus       230 a~ig~~~~~~~~a~~l~~aGvd~v~i  255 (494)
T 1vrd_A          230 AAVGTSPETMERVEKLVKAGVDVIVI  255 (494)
T ss_dssp             EEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             cccCcCHhHHHHHHHHHHhCCCEEEE
Confidence             1333355667777788888776554

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.28  E-value=9.5e-05  Score=75.24  Aligned_cols=61  Identities=16%  Similarity=0.240  Sum_probs=43.9

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .+.+|+++|+|+.++++++++.++. +++++|.+++...+||+|++ ++++|+|+.+|+++..
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKARVEKILVVNDE-FQLKGMITAKDFHKAE  207 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---CCCEEEECTT-SBCCEEECCC-----C
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEeehHhHHHHhh
Confidence            4678999999765688999999999 99999999999999999976 8999999999999764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.14  E-value=0.00022  Score=72.50  Aligned_cols=98  Identities=10%  Similarity=0.111  Sum_probs=57.0

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCc-
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP-  150 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~-  150 (351)
                      .+.+++++|++..+++++++++++. +++++|.+++...+||+|++ ++++|+|+.+|+++...... ...+ +..... 
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~~~~~-~~~~-~~~rl~v  246 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLK-EANEILQRSKKGKLPIVNDC-DELVAIIARTDLKKNRDYPL-ASKD-SQKQLLC  246 (514)
T ss_dssp             ----------CCBCCCCEETTCCST-TTTTHHHHHTCSCCCEESSS-SCCC----CCCCSSCCCCTT-CCBC-TTSCBCC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCCcccEECCC-CeEEEEEEHHHHHHHhhCcc-hhcc-cCCceee
Confidence            3567899998655778999999999 99999999999999999875 89999999999997653211 1111 111111 


Q ss_pred             --EecCCCCHHHHHHHHHhCCCcEE
Q 018757          151 --RVSEDMPLYDILNEFQKGHSHIA  173 (351)
Q Consensus       151 --~V~~~~~L~daL~~m~~~~~~~a  173 (351)
                        .+.......+.+..+.+.+...+
T Consensus       247 ga~vG~~~~~~~~a~~~~~aG~d~v  271 (514)
T 1jcn_A          247 GAAVGTREDDKYRLDLLTQAGVDVI  271 (514)
T ss_dssp             EEEECSSTTHHHHHHHHHHTTCSEE
T ss_pred             eeEecCchhhHHHHHHHHHcCCCEE
Confidence              13333345556666666666644

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.12  E-value=0.00019  Score=73.48  Aligned_cols=58  Identities=19%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      +.+|+++||+  ++++++.+.+++ +|.++|.++++..+||+|++ ++++|+|+.+|+++..
T Consensus       199 ~~~V~evMT~--~lvt~~~~~~le-eA~~iL~~~kieklpVVd~~-g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          199 ETPIKSVMTT--EVVTGSSPITLE-KANSLLRETKKGKLPIVDSN-GHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             --------------------------------------------------------------
T ss_pred             ceEhhhhccc--ceEEecCCCCHH-HHHHHHHHccccceeEEccC-CcEEEEEEechhhhhh
Confidence            5689999996  799999999999 99999999999999999986 8999999999998753

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.98  E-value=0.00048  Score=69.60  Aligned_cols=97  Identities=19%  Similarity=0.260  Sum_probs=17.6

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCC--c
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI--P  150 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v--~  150 (351)
                      +.+++++|++  +++++++++++. ++++.|.+++...+||++++ ++++|+|+.+||++...... ...+.+.+-.  .
T Consensus       149 ~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde~-g~lvGiiT~~Dil~~~~~~~-~~~~~~g~~~v~~  223 (486)
T 2cu0_A          149 GKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDER-GKLVGLITMSDLVARKKYKN-AVRDENGELLVAA  223 (486)
T ss_dssp             --------------------------------------------------------------CCTT-CCBCTTSCBCCEE
T ss_pred             CCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEecC-CeEEEEEEHHHHHHhhhccc-cccccCCceeecc
Confidence            4578999985  678999999999 99999999999999999875 88999999999998754211 1111111111  1


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEe
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYK  177 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVD  177 (351)
                      .+.. .. .+.+..|.+.+...+ |+|
T Consensus       224 ~~~~-~~-~~~a~~l~~~gvd~l-vvd  247 (486)
T 2cu0_A          224 AVSP-FD-IKRAIELDKAGVDVI-VVD  247 (486)
T ss_dssp             EECT-TC-HHHHHHHHHTTCSEE-EEE
T ss_pred             eech-hh-HHHHHHHHHhcCCce-EEE
Confidence            1333 33 566778888888875 555

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.86  E-value=0.0032  Score=63.34  Aligned_cols=99  Identities=12%  Similarity=0.153  Sum_probs=68.1

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCC--
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI--  149 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v--  149 (351)
                      .+.+++++|++ .+++++++++++. ++++.|.+++..++||++++ ++++|+|+..|+++...... ...+...+-.  
T Consensus       150 ~~~~v~~im~~-~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGivt~~Dil~~~~~~~-~~~d~~~~~~vg  225 (491)
T 1zfj_A          150 YNAPISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVIEFPH-AAKDEFGRLLVA  225 (491)
T ss_dssp             SSSBTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHHHCTT-CCBCTTSCBCCE
T ss_pred             CCCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHHHHHHhccc-cccCcCCcEEEE
Confidence            46789999984 2567899999999 99999999999999999875 89999999999997654210 1111100101  


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEE
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAV  174 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~ap  174 (351)
                      ..+.......+.+..+.+.+...+.
T Consensus       226 ~~i~~~~~~~~~a~~l~~~G~d~iv  250 (491)
T 1zfj_A          226 AAVGVTSDTFERAEALFEAGADAIV  250 (491)
T ss_dssp             EEECSSTTHHHHHHHHHHHTCSEEE
T ss_pred             EeccCchhHHHHHHHHHHcCCCeEE
Confidence            1233333345556666667777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	2e-08
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	6e-06
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	6e-06
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	3e-04
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	8e-04
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	9e-04
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	0.001
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	0.001
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.003
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.004

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 14/134 (10%), Positives = 40/134 (29%), Gaps = 20/134 (14%)

Query: 71  LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNL 130
           +      D +   SK    D    +      A++T G    P++     + +G++ + + 
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 131 LSV-------------------DYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSH 171
           +++                            +   + +  +S +  L+D ++   +   H
Sbjct: 69  INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIH 128

Query: 172 IAVVYKDLNEKKEG 185
              V    +     
Sbjct: 129 RLPVIDPESGNTLY 142

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 14/152 (9%)

Query: 140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQP 199
           P++  +  ++  + +++ L   +    +      +   D + K  G +   N  K   + 
Sbjct: 3   PVKVFMSTKVQTIYKEVRLDQAVKLMLR-RGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA 61

Query: 200 EKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFP 259
                            +   L + D   +     A     +        IL+ +N    
Sbjct: 62  VDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGS---LLILNKDNTI-- 116

Query: 260 DFPSNDEAVGVITMEDVIEELLQEEILDETDE 291
                    G+IT  D++  L    ++++  E
Sbjct: 117 --------RGIITERDLLIALHHILVMEKFKE 140

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 16/156 (10%), Positives = 40/156 (25%), Gaps = 25/156 (16%)

Query: 56  DLTHDETTIIAGALE-LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY 114
           D+   +   +      +  +T+ D +    +    D+   +   +L+ +        P++
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLW 59

Query: 115 SGNPTNIIGLILVKNLLSV-----------------------DYRDAVPLRKMIIRRIPR 151
                   GL+ + + ++V                         R+       I      
Sbjct: 60  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 119

Query: 152 VSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGEL 187
           V     L D      K  +    +     E     +
Sbjct: 120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMI 155

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 20/157 (12%), Positives = 41/157 (26%), Gaps = 11/157 (7%)

Query: 135 YRDAVPLRKMIIRRIPRVSEDMPLYDILNEF-QKGHSHIAVVYK------DLNEKKEGEL 187
           Y+  V +     R +  V E  PL   L          + VV         ++E      
Sbjct: 1   YKG-VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRD 59

Query: 188 FKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCS 247
            +        +   SS++     +               +   ++          H    
Sbjct: 60  SEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVH 119

Query: 248 YCILDFENGPFPDFP---SNDEAVGVITMEDVIEELL 281
              L          P      + +G+I   D+++ L+
Sbjct: 120 EVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 37.2 bits (85), Expect = 8e-04
 Identities = 12/149 (8%), Positives = 38/149 (25%), Gaps = 16/149 (10%)

Query: 139 VPLRKM---IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKP 195
           VPL +M       +   S +  +YD++    + +     +              D     
Sbjct: 1   VPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLI 60

Query: 196 RGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFEN 255
           +     +                + + +                          +     
Sbjct: 61  QDGDYSNLDLSVGEALLKRPANFDGVHT--------CRATDRLDGIFDAIKHSRV---HR 109

Query: 256 GPFPDFPSNDEAVGVITMEDVIEELLQEE 284
               D   N +  G++++ D++  ++ ++
Sbjct: 110 LFVVD--ENLKLEGILSLADILNYIIYDK 136

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.1 bits (85), Expect = 9e-04
 Identities = 14/148 (9%), Positives = 34/148 (22%), Gaps = 23/148 (15%)

Query: 141 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPE 200
           L+      I  V    P+Y  L  F +       V  +     +     D       +  
Sbjct: 14  LQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY 73

Query: 201 KSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATP-----TFNKRHRGCSYCILDFEN 255
            +             +    +                                 ++D   
Sbjct: 74  NNLDVSVTKALQHRSHYFEGVLK--------CYLHETLEAIINRLVEAEVHRLVVVD--- 122

Query: 256 GPFPDFPSNDEAVGVITMEDVIEELLQE 283
                   +D   G++++ D+++ L+  
Sbjct: 123 -------EHDVVKGIVSLSDILQALVLT 143

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 19/151 (12%)

Query: 142 RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEK 201
            K++      V+ +  ++D +    + H    +V KD N    G L + +  K      K
Sbjct: 6   EKIMNSNFKTVNWNTTVFDAVKIMNENH-LYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 64

Query: 202 SSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDF 261
              +V   +       + K +         +          +      ++D         
Sbjct: 65  KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYL--------SENGLERCAVVD--------- 107

Query: 262 PSNDEAVGVITMEDVIEELLQEEILDETDEY 292
                 VG++T+ D+   L +  I D    +
Sbjct: 108 -DPGRVVGIVTLTDLSRYLSRASITDILLSH 137

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 16/141 (11%)

Query: 143 KMIIRR-IPRVSEDMPLYDILNEF-QKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPE 200
            +I +  +       P+ D++    Q   S + ++  D N          +         
Sbjct: 12  NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGI 69

Query: 201 KSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPD 260
            +   +  G     + L  + +  +   T                    +       F  
Sbjct: 70  YNDLSLSVG-----EALMRRSDDFEGVYT--CTKNDKLSTIMDNIRKARV-----HRFFV 117

Query: 261 FPSNDEAVGVITMEDVIEELL 281
                  VGV+T+ D+++ +L
Sbjct: 118 VDDVGRLVGVLTLSDILKYIL 138

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 15/147 (10%)

Query: 142 RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEK 201
             ++I+  P +S++  L     +  +G     +V  +           +     R     
Sbjct: 4   ETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---------KIEGLLTTRDLLST 54

Query: 202 SSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDF 261
                 +  +       +     D   T        T ++          +F + P  D 
Sbjct: 55  VESYCKDSCSQGDLYHISTTPIIDYM-TPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD- 112

Query: 262 PSNDEAVGVITMEDVIEELLQEEILDE 288
             ND+ VG++T  + +  L ++  LDE
Sbjct: 113 -INDKPVGIVTEREFL-LLYKD--LDE 135

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 10/143 (6%)

Query: 143 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELFKDNCKKPRGQPEKS 202
           K+I  +   V ED P+ +I++   +      V     N+           K         
Sbjct: 8   KLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF--- 64

Query: 203 SQKVDNGVTAAGQNLRNKLESKDAQQTKKV--PPATPTFNKRHRGCSYCILDFENGPFPD 260
                 G     + +R+ ++   A+   ++   P     +         ++D      P 
Sbjct: 65  -----FGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPV 119

Query: 261 FPSNDEAVGVITMEDVIEELLQE 283
                E VG +   +++  L + 
Sbjct: 120 VDEKGEIVGDLNSLEILLALWKG 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.84
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.83
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.82
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.82
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.82
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.81
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.81
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.81
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.81
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.8
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.8
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.8
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.79
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.79
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.79
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.78
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.76
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.76
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.75
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.75
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.73
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.73
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.72
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.72
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.71
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.65
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.5
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.49
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.46
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.41
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.4
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.4
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.34
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.33
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.32
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.32
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.29
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.29
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.24
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.22
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.2
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.2
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.1
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.09
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.09
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.99
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	97.97
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.95
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.88
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.87
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.83
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.66
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	88.09

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=2e-21  Score=161.56  Aligned_cols=102  Identities=19%  Similarity=0.316  Sum_probs=91.4

Q ss_pred             ccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc---------CCcchhh
Q 018757           73 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRK  143 (351)
Q Consensus        73 d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~---------~~~~V~d  143 (351)
                      +.+|+++|+|..+++++.+++|+. +|++.|.+++++++||++++ ++++|+++.+|++++...         ...++.+
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~   78 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   78 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccccccccccccccccc
Confidence            468999999999999999999999 99999999999999999876 899999999999865432         1457899


Q ss_pred             hhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          144 MIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       144 IM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +|.++++++.+++++.+++..|.++  +++||+|+
T Consensus        79 ~m~~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd~  111 (132)
T d1yava3          79 VMLTDIPRLHINDPIMKGFGMVINN--GFVCVEND  111 (132)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTC--SEEEEECT
T ss_pred             cccccccccccchhHHHHHHHHHhC--CEEEEEcc
Confidence            9999999999999999999999876  46999988

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=6.3e-21  Score=159.27  Aligned_cols=101  Identities=13%  Similarity=0.232  Sum_probs=91.3

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----------CCcchhh
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----------DAVPLRK  143 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----------~~~~V~d  143 (351)
                      .+|+++|++  +++++++++|+. +|++.|.+++++++||++++ ++++|+++.+|+++....          ...++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            479999997  688999999999 99999999999999999876 889999999999765321          1568999


Q ss_pred             hhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          144 MIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       144 IM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +|.++++++.+++++.+++..|.+++.+.+||+|+
T Consensus        78 im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~  112 (141)
T d3ddja1          78 VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK  112 (141)
T ss_dssp             HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             HhCcccccccccchhhHHHHHHHHcCCCEEEEEcc
Confidence            99999999999999999999999999999999998

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.82  E-value=2.5e-20  Score=154.67  Aligned_cols=98  Identities=16%  Similarity=0.161  Sum_probs=90.4

Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHHcC-----CcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCC
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI  149 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~-----~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v  149 (351)
                      ||+.||++  +++++++++|+. +|++.|++++     +..+||++++ ++++|+++.++++.+..  ..++.++|.+++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~~--~~~v~~im~~~~   75 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVNDD--DTLIADILNERV   75 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSCT--TSBHHHHSBSCC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeeccccccc--cEEhhhhccCCC
Confidence            78999985  889999999999 9999999884     6889999876 89999999999997654  468999999999


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++.+++++.+|++.|.+++++.+||+|+
T Consensus        76 ~~v~~~~~l~~a~~~m~~~~~~~lPVVD~  104 (127)
T d2ouxa2          76 ISVHVGDDQEDVAQTIRDYDFLAVPVTDY  104 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             ccCCCCCCHHHHHHHHHHhCCEEEEEEeC
Confidence            99999999999999999999999999997

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=9.7e-20  Score=149.36  Aligned_cols=99  Identities=15%  Similarity=0.107  Sum_probs=91.7

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEec
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  153 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~  153 (351)
                      ++|+++|++  ++.++++++|+. ++++.|.+++++.+||++++ ++++|+|+.+|++++..  ..++.++|.+++++++
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~~--~~~v~~~~~~~~~~v~   74 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFVH   74 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCEE
T ss_pred             CCchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhhc--cccccccccCccEEEC
Confidence            579999985  788999999999 99999999999999999875 89999999999997754  4589999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          154 EDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       154 ~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++.++++.|.+++...+||+|+
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvde   99 (121)
T d1vr9a3          75 EEDNITHALLLFLEHQEPYLPVVDE   99 (121)
T ss_dssp             TTSBHHHHHHHHHHCCCSEEEEECT
T ss_pred             CCCCHHHHHHHHHhcCceeeeeECC
Confidence            9999999999999999999999998

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.82  E-value=5.3e-20  Score=152.03  Aligned_cols=103  Identities=18%  Similarity=0.272  Sum_probs=93.7

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC---Ccchhhhhcc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIR  147 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~---~~~V~dIM~r  147 (351)
                      |++.+|+++|++  +++++++++++. +|++.|.+++++++||+++  ++++|+|+.+|+++....+   ..++.++|.+
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccccchhhhhhhh
Confidence            467899999985  789999999999 9999999999999999985  6899999999998764432   5689999999


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++++++++.+|++.|.+++.+.+||+|+
T Consensus        76 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  106 (127)
T d2ef7a1          76 SLITIREDSPITGALALMRQFNIRHLPVVDD  106 (127)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hccccccccchhHHHHHHHHcCceEEEEEeC
Confidence            9999999999999999999999999999988

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.81  E-value=3.3e-20  Score=156.43  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=91.5

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcchhhhhccC
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRR  148 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V~dIM~r~  148 (351)
                      ++|+++|++  ++.++++++|+. +|++.|.+++++++||++++ ++++|+|+.+|+++....     ...+++++|.++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~   78 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   78 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhcccccccccccccccc
Confidence            579999986  788999999999 99999999999999999875 899999999999764321     245789999999


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          149 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       149 v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.+++++.+|++.|.+++.+.+||+|+
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  108 (142)
T d1pvma4          79 IPKVKSDYDVKDVAAYLSENGLERCAVVDD  108 (142)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEECT
T ss_pred             cccccchhhHHHHHHHHHHcCCcEEEEEec
Confidence            999999999999999999999999999998

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=1.8e-20  Score=154.13  Aligned_cols=99  Identities=22%  Similarity=0.250  Sum_probs=72.9

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCCcEec
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVS  153 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~  153 (351)
                      ++|+++|++  +++++++++++. +|++.|.+++++++||++++ |+++|+|+.+|++....  ...+.++|.+++++++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~--~~~~~~~~~~~~~~v~   74 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhhc--ccchhhccccceeecc
Confidence            579999996  678999999999 99999999999999999875 89999999999997654  4578899999999999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          154 EDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       154 ~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++.+++..|.+++.+.+||+|+
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd~   99 (122)
T d2yzqa2          75 ENDTLKKAAKLMLEYDYRRVVVVDS   99 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hhhHHHHHHHHHHHcCcEEEEEEeC
Confidence            9999999999999999999999998

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.81  E-value=5e-20  Score=152.36  Aligned_cols=102  Identities=12%  Similarity=0.216  Sum_probs=90.7

Q ss_pred             cccccccccC-cceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----CCcchhhhhcc
Q 018757           74 KTAKDAMTPI-SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIR  147 (351)
Q Consensus        74 ~tV~dIMtPr-~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----~~~~V~dIM~r  147 (351)
                      .||++||+.+ .+++++++++|+. +|+++|.+++++++||+++  ++++|+++.+|+++....     ...++.++|.+
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~   78 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR   78 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcccccceeEeeeccc
Confidence            3799999864 3789999999999 9999999999999999984  789999999999764321     14679999999


Q ss_pred             CCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          148 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       148 ~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++.+++++.+|++.|.+++++.+||+|+
T Consensus        79 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  109 (127)
T d2rc3a1          79 QVAYVDLNNTNEDCMALITEMRVRHLPVLDD  109 (127)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             eeEEeccCccHHHHHHHHHHCCCcEEEEEEC
Confidence            9999999999999999999999999999986

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=2.8e-20  Score=152.88  Aligned_cols=101  Identities=14%  Similarity=0.231  Sum_probs=89.9

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc-c----CCcchhhhhccC
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R----DAVPLRKMIIRR  148 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~-~----~~~~V~dIM~r~  148 (351)
                      .||+|+|++  +++++.+++++. +|++.|.+++++++||++++ ++++|+|+.+||+.... .    ....++++|..+
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~   76 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS   76 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEeecc
Confidence            379999985  788999999999 99999999999999999875 89999999999875432 2    145678999899


Q ss_pred             CcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          149 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       149 v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++.+++++.+|++.|.+++++.+||+|+
T Consensus        77 ~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~  106 (123)
T d1y5ha3          77 IYYVDANASIQEMLNVMEEHQVRRVPVISE  106 (123)
T ss_dssp             CCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred             ceeeeecchHHHHHHHHHHcCceEEEEEEC
Confidence            999999999999999999999999999987

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.80  E-value=5.5e-20  Score=154.23  Aligned_cols=101  Identities=20%  Similarity=0.253  Sum_probs=91.3

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc------------CCcch
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------------DAVPL  141 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~------------~~~~V  141 (351)
                      ++|+|+|++  ++.++.+++++. +|++.|.+++++++||+|++ ++++|+|+.+|+++....            ...++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   77 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence            579999996  778999999999 99999999999999999876 899999999999854321            14689


Q ss_pred             hhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          142 RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       142 ~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++|.++++++++++++.+|+.+|.+++.+.+||+|+
T Consensus        78 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  114 (139)
T d2o16a3          78 FEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK  114 (139)
T ss_dssp             HHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET
T ss_pred             hHhhccccccccccchHHHHHHHHHHcCceEEEEEEC
Confidence            9999999999999999999999999999999999987

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.80  E-value=3.6e-20  Score=160.58  Aligned_cols=122  Identities=11%  Similarity=0.105  Sum_probs=104.6

Q ss_pred             CHHHHHHHHHhhcC-cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc
Q 018757           58 THDETTIIAGALEL-TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR  136 (351)
Q Consensus        58 ~~~E~~mI~~~l~l-~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~  136 (351)
                      .+.|+..++.+.+| ...++.|+|++..++++++.++++. +|+..|.+++++++||++++.++++|+|+.+|++.....
T Consensus         3 ~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1           3 QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            45678888888885 8999999999888999999999999 999999999999999999766899999999999764211


Q ss_pred             ---------C--------------CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 018757          137 ---------D--------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN  180 (351)
Q Consensus       137 ---------~--------------~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe~G  180 (351)
                               .              ......+|.++++++++++++.+|+..|.+++.|.+||+|+.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g  148 (179)
T d2ooxe1          82 YYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDG  148 (179)
T ss_dssp             HHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECT
T ss_pred             ccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCC
Confidence                     0              0123345788999999999999999999999999999999844

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=4.8e-20  Score=156.05  Aligned_cols=98  Identities=13%  Similarity=0.179  Sum_probs=90.0

Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHHcC-----CcEeeeeeCCCCcEEEEEEhhhhhcccccCCcchhhhhccCC
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI  149 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~-----~sriPVvd~~~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v  149 (351)
                      ||++||++  +++++++++|+. +|++.|++++     ++.+||++++ ++++|+|+.+|++....  ..++.++|.+++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~~--~~~v~~im~~~~   75 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIMNPKV   75 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSCT--TCBSTTTSBSSC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhccc--ccchHHhcccCC
Confidence            79999996  889999999999 9999998875     6789999876 89999999999987654  468999999999


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++.+++++.+|++.|.+++.+.+||||+
T Consensus        76 ~~v~~~~~~~~a~~~m~~~~~~~lPVVd~  104 (144)
T d2yvxa2          76 VYVRTDTDQEEVARLMADYDFTVLPVVDE  104 (144)
T ss_dssp             CCEESSCCHHHHHHHHHHSCCSEEEEECS
T ss_pred             ccCCCCChHHHHHHHHHHcCCCEEEEEeE
Confidence            99999999999999999999999999998

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=1.3e-19  Score=153.53  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=92.6

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc--------------
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------  136 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~--------------  136 (351)
                      |++.+|.++|++  +++++.+++++. +|++.|.+++++++||++++ ++++|+|+.+|++.....              
T Consensus         1 ~~~~~v~~~m~r--~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           1 YKGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCCHHHHhcC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            468899999985  789999999999 99999999999999999875 899999999999743211              


Q ss_pred             --------------------CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          137 --------------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       137 --------------------~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                          ...++.++|.++++++.+++++.+++..|.+++.+.+||+|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~  138 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG  138 (156)
T ss_dssp             --------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeC
Confidence                                034688999999999999999999999999999999999998

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.79  E-value=2.6e-19  Score=146.61  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=89.1

Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC----CcchhhhhccCCc
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIP  150 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~----~~~V~dIM~r~v~  150 (351)
                      +|+|+|++  +++++++++|+. +|++.|.+++++.+||.++  ++++|+|+.+||+++...+    ..++.++|.++++
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~   75 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV   75 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccccccccceeEeeecccccc
Confidence            47999995  788999999999 9999999999999999974  7899999999998754332    5689999999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++++.+|+..|.+++.+.+||+|+
T Consensus        76 ~v~~~~~l~~a~~~m~~~~~~~l~V~~~  103 (120)
T d1pbja3          76 TISPRATIKEAAEKMVKNVVWRLLVEED  103 (120)
T ss_dssp             EECTTSCHHHHHHHHHHHTCSEEEEEET
T ss_pred             cccchhHHHHHHHHHHHcCCeEEEEEEC
Confidence            9999999999999999999999999765

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=6.3e-19  Score=146.56  Aligned_cols=101  Identities=13%  Similarity=0.284  Sum_probs=90.7

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc----CCcchhhhhccCC
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRI  149 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~----~~~~V~dIM~r~v  149 (351)
                      .+|+++|+.  +++++++++|+. ++++.|.+++++++||++++ ++++|+|+.+|+++....    ...+++++|.+++
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL   80 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSC
T ss_pred             CcHHHHcCC--CCeEECCcCcHH-HHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccCccceeEeecccccc
Confidence            479999984  889999999999 99999999999999999876 899999999999865432    2568999999999


Q ss_pred             cEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          150 PRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       150 ~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++.+++++.+++..|.+++.+.+||+++
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V~~~  109 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILIEEE  109 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999999999999999998765

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.8e-19  Score=153.14  Aligned_cols=107  Identities=14%  Similarity=0.273  Sum_probs=93.2

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-------------
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-------------  137 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-------------  137 (351)
                      |..+++.|+|.+..++++++.++++. +|++.|.+++++++||++++.++++|+|+.+|++......             
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            45789999999888999999999999 9999999999999999987668899999999997653221             


Q ss_pred             ------CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 ------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ------~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                            ...+.++|.++++++++++++.+|+..|.+++.|.+||+|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~  135 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP  135 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT
T ss_pred             hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC
Confidence                  11234677888999999999999999999999999999985

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.76  E-value=3e-18  Score=141.24  Aligned_cols=93  Identities=11%  Similarity=0.125  Sum_probs=80.2

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC-CCcEEEEEEhhhhhcccccCCcchhhhhccCCcEecCCCCHHHHHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN  163 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~-~~~IVGIVt~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~L~daL~  163 (351)
                      +++++++++|+. +|+++|.+++++++||+|+. .++++|+|+.+|++.+..........+|.++++++++++++.+|++
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~   84 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAER   84 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCHHHHHH
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCCHHHHHH
Confidence            567999999999 99999999999999999852 3789999999999887654433334445667889999999999999


Q ss_pred             HHHhCCCcEEEEEec
Q 018757          164 EFQKGHSHIAVVYKD  178 (351)
Q Consensus       164 ~m~~~~~~~apVVDe  178 (351)
                      +|.+++++.+||+|+
T Consensus        85 ~m~~~~~~~lpVVd~   99 (126)
T d1zfja4          85 ILHEHRIEKLPLVDN   99 (126)
T ss_dssp             HHHHTTCSEEEEECT
T ss_pred             HHHhcCCcEEEEEcC
Confidence            999999999999998

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.76  E-value=2e-18  Score=145.75  Aligned_cols=104  Identities=15%  Similarity=0.021  Sum_probs=89.0

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC-CCcEEEEEEhhhhhcccccC-------------
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRD-------------  137 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~-~~~IVGIVt~kDLl~~~~~~-------------  137 (351)
                      .+++|+|||++  +++++++++|+. ++++.|.+++++++||++++ .+.++|+++..|++.+....             
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             cceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            46799999995  889999999999 99999999999999999853 36899999999997543210             


Q ss_pred             ----------------CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 ----------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ----------------~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                      ...+.++|.+++++|.+++++.++++.|.+++++.+||+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~  142 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM  142 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             ccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence                            12345678889999999999999999999999999999876

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.75  E-value=2.5e-18  Score=146.01  Aligned_cols=102  Identities=9%  Similarity=0.174  Sum_probs=86.1

Q ss_pred             cccccccc-CcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----Ccchhhhh---
Q 018757           75 TAKDAMTP-ISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMI---  145 (351)
Q Consensus        75 tV~dIMtP-r~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~V~dIM---  145 (351)
                      .++++|.+ +.+++++.+++|+. +|++.|.+++++++||++++ ++++|+|+.+|++......     ..++.++|   
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~   79 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR   79 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTS
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeee
Confidence            46677764 45899999999999 99999999999999999875 8999999999998654321     34566664   


Q ss_pred             ---ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          146 ---IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       146 ---~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                         ..+++++.+++++.++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  115 (153)
T d2ooxe2          80 PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE  115 (153)
T ss_dssp             CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT
T ss_pred             ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC
Confidence               345678999999999999999999999999998

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=2.1e-18  Score=142.84  Aligned_cols=99  Identities=17%  Similarity=0.136  Sum_probs=89.0

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC--------------Cc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AV  139 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~--------------~~  139 (351)
                      ++|+++|++  ++.++++++++. +|++.|.+++++++||+++   +++|+++..|++......              ..
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccchhhhhccccccC
Confidence            579999996  677899999999 9999999999999999964   599999999998654211              46


Q ss_pred             chhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++|.+++.++++++++.+|+..|.+++++.+||+|+
T Consensus        75 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~  113 (135)
T d3ddja2          75 PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI  113 (135)
T ss_dssp             BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT
T ss_pred             CHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeC
Confidence            789999999999999999999999999999999999998

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=9.5e-18  Score=140.65  Aligned_cols=105  Identities=11%  Similarity=0.153  Sum_probs=87.4

Q ss_pred             ccccccccccc-CcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----Ccchh---
Q 018757           72 TEKTAKDAMTP-ISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLR---  142 (351)
Q Consensus        72 ~d~tV~dIMtP-r~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~V~---  142 (351)
                      -..++++++.+ ..+++++.+++|+. +|++.|.+++++++||++++ ++++|+|+.+|++......     ..++.   
T Consensus         7 ~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~   84 (145)
T d2v8qe1           7 MSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL   84 (145)
T ss_dssp             GGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             hhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhcc
Confidence            34577777653 24788999999999 99999999999999999875 8999999999998765432     22333   


Q ss_pred             ---hhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          143 ---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       143 ---dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                         ..|..+++++.+++++.++++.|.+++.+.+||+|+
T Consensus        85 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  123 (145)
T d2v8qe1          85 QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE  123 (145)
T ss_dssp             GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             chhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc
Confidence               335678889999999999999999999999999987

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.73  E-value=4.7e-18  Score=140.20  Aligned_cols=102  Identities=11%  Similarity=0.092  Sum_probs=87.3

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCC-CCcEEEEEEhhhhhcccccC--CcchhhhhccCCc
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIP  150 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~-~~~IVGIVt~kDLl~~~~~~--~~~V~dIM~r~v~  150 (351)
                      ++|+|+|++  +++++++++|+. ++++.|.+++++++||++.+ .++++|+++..|+++.....  .......|+++++
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccce
Confidence            579999985  778999999999 99999999999999999532 37899999999998764332  2233344678899


Q ss_pred             EecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          151 RVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       151 ~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++.+++++.+++++|.+++++.+||+|+
T Consensus        78 ~v~~~~~~~~a~~~m~~~~i~~lpVvd~  105 (131)
T d2riha1          78 TVLDTDPVHVAAEKMRRHNIRHVVVVNK  105 (131)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             eEeeecchHHHHHHHHHCCeEEEEEEcC
Confidence            9999999999999999999999999998

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.5e-18  Score=144.45  Aligned_cols=104  Identities=19%  Similarity=0.230  Sum_probs=87.0

Q ss_pred             cccccccccCcc----eEEEcCCCCchHHHHHHHHHcCCcEeeeeeC-CCCcEEEEEEhhhhhccccc------------
Q 018757           74 KTAKDAMTPISK----AFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLSVDYR------------  136 (351)
Q Consensus        74 ~tV~dIMtPr~~----VvtV~~d~tv~~eal~~m~~~~~sriPVvd~-~~~~IVGIVt~kDLl~~~~~------------  136 (351)
                      ..|+|||.|+..    ++.+.+++|+. ++.++|.+++++++||+++ +.++++|+|+.+||+.+...            
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            468999998642    25677889999 9999999999999999953 34789999999999854310            


Q ss_pred             ----------------CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          137 ----------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       137 ----------------~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                                      ...+++++|.++++++.+++++.+++++|.+++.+.+||+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~  139 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN  139 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             hhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEEC
Confidence                            024588999999999999999999999999999999999876

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.4e-17  Score=139.20  Aligned_cols=104  Identities=14%  Similarity=0.183  Sum_probs=81.5

Q ss_pred             ccccccc-cccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccccC-----Ccchh----
Q 018757           73 EKTAKDA-MTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLR----  142 (351)
Q Consensus        73 d~tV~dI-MtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~~-----~~~V~----  142 (351)
                      .++++++ +.+..+++++.+++++. +|++.|.+++++++||++++ ++++|+|+.+|+++.....     ...+.    
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~   82 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM   82 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhhh
Confidence            4556665 23346899999999999 99999999999999999875 7899999999998754332     12222    


Q ss_pred             --hhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          143 --KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       143 --dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                        ..|..++++|++++++.++++.|.+++.+.+||+|+
T Consensus        83 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~  120 (140)
T d2nyca1          83 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD  120 (140)
T ss_dssp             HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeC
Confidence              234567889999999999999999999999999998

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=1.9e-17  Score=138.41  Aligned_cols=100  Identities=18%  Similarity=0.201  Sum_probs=84.8

Q ss_pred             cccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccccc-----------------
Q 018757           74 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----------------  136 (351)
Q Consensus        74 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~~-----------------  136 (351)
                      ..|.++|+.  .++++.+++++. ++++.|.+++++++||+|++ ++++|+|+.+||++....                 
T Consensus         4 ~~v~~~m~~--~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (145)
T d1o50a3           4 KDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   79 (145)
T ss_dssp             HHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             eEhHHhCCC--CCEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhh
Confidence            356778875  678999999999 99999999999999999875 899999999999764211                 


Q ss_pred             --CCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          137 --DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       137 --~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                        ...++.++ +++++++.+++++.+|+..|.+++++.+||+|+
T Consensus        80 ~~~~~~~~~~-~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~  122 (145)
T d1o50a3          80 RLIAKNASEI-MLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDE  122 (145)
T ss_dssp             CCSSCBHHHH-CBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hccccCHHHH-cCCCEEEcCCCCHHHHHHHHHHcCceEEEEEeC
Confidence              02346666 466789999999999999999999999999988

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.65  E-value=8.7e-18  Score=137.73  Aligned_cols=93  Identities=11%  Similarity=0.205  Sum_probs=43.2

Q ss_pred             ceEEEcCCCCchHHHHHHHHHcCCcEeeeeeC--CCCcEEEEEEhhhhhcccccC-Ccchhhhhc--cCCcEecCCCCHH
Q 018757           85 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG--NPTNIIGLILVKNLLSVDYRD-AVPLRKMII--RRIPRVSEDMPLY  159 (351)
Q Consensus        85 ~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~--~~~~IVGIVt~kDLl~~~~~~-~~~V~dIM~--r~v~~V~~~~~L~  159 (351)
                      +++++++++|+. +|+++|.+++++++||+++  ..++++|+|+.+|+....... ..++..+|+  .+++++++++++.
T Consensus         5 ~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           5 DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK   83 (120)
T ss_dssp             TTCC----CCCC---CCBC---------------CTTCCC----------------------CCSBTTTSCCEETTCCHH
T ss_pred             CCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCCHH
Confidence            556899999999 9999999999999999985  237899999999987544322 345555543  4678999999999


Q ss_pred             HHHHHHHhCCCcEEEEEec
Q 018757          160 DILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       160 daL~~m~~~~~~~apVVDe  178 (351)
                      +|+++|.+++++.+||+|+
T Consensus        84 ~a~~~m~~~~i~~lpVVd~  102 (120)
T d1jr1a4          84 EANEILQRSKKGKLPIVNE  102 (120)
T ss_dssp             HHHHHTCSCC---CEEEET
T ss_pred             HHHHHHHHcCccEEEEEcC
Confidence            9999999999999999998

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.50  E-value=1e-07  Score=77.50  Aligned_cols=40  Identities=13%  Similarity=0.185  Sum_probs=38.6

Q ss_pred             cchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .||+++|.++++++++++++.+|++.|.+++.+.+||+|+
T Consensus         5 ~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~   44 (132)
T d2yzia1           5 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND   44 (132)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc
Confidence            5899999999999999999999999999999999999998

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.49  E-value=3.3e-08  Score=80.32  Aligned_cols=60  Identities=17%  Similarity=0.314  Sum_probs=54.2

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      -.+.+|+++|++  ++.++.+++++. ++++.|.++++.++||+|++ |+++|+|+.+|++...
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~~-g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          62 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             cccEEhhhhccC--CCccCCCCCCHH-HHHHHHHHhCCEEEEEEeCC-CEEEEEEEHHHHHHHH
Confidence            456889999985  677999999999 99999999999999999875 8999999999999764

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=6.6e-08  Score=77.68  Aligned_cols=40  Identities=13%  Similarity=0.101  Sum_probs=38.0

Q ss_pred             cchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ++++++|.++++++.+++++.+|++.|.+++.+.+||+|+
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~   40 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD   40 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec
Confidence            4688999999999999999999999999999999999988

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.41  E-value=1.1e-07  Score=78.72  Aligned_cols=61  Identities=25%  Similarity=0.336  Sum_probs=54.4

Q ss_pred             cCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           70 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        70 ~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .+...+|+++|++  +++++.+++++. ++++.|.++++.++||++++ |+++|+|+.+||+++.
T Consensus        95 ~~~~~~v~~~m~~--~~~tv~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          95 QLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYSIEQLPVIRGE-GDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEETT-TEEEEEEEHHHHGGGG
T ss_pred             cccCCEeehhccc--CceEECcccccH-HHHHHHHHcCeeEEEEEeCC-CEEEEEEEHHHHHHHh
Confidence            3677899999986  678999999999 99999999999999999976 8999999999999764

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.40  E-value=1.2e-07  Score=76.71  Aligned_cols=60  Identities=18%  Similarity=0.272  Sum_probs=54.4

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ...+|+++|++  +++++++++++. +++++|.+++++++||+|++ |+++|+|+.+|++++..
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccc-hhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            45789999986  778999999999 99999999999999999876 89999999999998764

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.40  E-value=2.9e-07  Score=73.51  Aligned_cols=39  Identities=15%  Similarity=0.340  Sum_probs=36.4

Q ss_pred             chhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +|+++|.+++++|++++++.+|++.|.+++.+.+||+++
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~   39 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE   39 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC
Confidence            478999999999999999999999999999999998876

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.34  E-value=4.3e-07  Score=74.74  Aligned_cols=61  Identities=15%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ....+|+++|+.  +++++++++++. ++++.|.++++.++||++++ |+++|+|+.+||+++..
T Consensus        66 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          66 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSC
T ss_pred             cccccccccccc--ccccccchhhHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHHHHh
Confidence            456789999985  778999999999 99999999999999999876 89999999999998764

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.33  E-value=7.1e-08  Score=77.52  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=46.8

Q ss_pred             CCCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcc
Q 018757           54 GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV  133 (351)
Q Consensus        54 ~G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~  133 (351)
                      -|.++..+  +....-.-.+.++..+|+.+.+++++++++++. +|+++|.+++++++||++++ ++++|+|+.+|++++
T Consensus        43 vGivT~~D--i~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          43 VGIISSRD--IDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNEN-DELVAIIARTDLKKN  118 (120)
T ss_dssp             C------------------------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEETT-TEEEEEECHHHHHHH
T ss_pred             eeeeeeee--eeehhccccCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhhc
Confidence            46666433  221122223567888888888899999999999 99999999999999999976 899999999999864

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.32  E-value=4.1e-07  Score=74.39  Aligned_cols=39  Identities=10%  Similarity=0.066  Sum_probs=37.4

Q ss_pred             chhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +++++|.++++++.+++++.+|++.|.+++.+.+||+|+
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~   41 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA   41 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc
Confidence            688999999999999999999999999999999999987

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.32  E-value=6.3e-07  Score=72.14  Aligned_cols=40  Identities=15%  Similarity=0.214  Sum_probs=38.0

Q ss_pred             cchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..|+++|.++++++++++++.+|++.|.+++.+.+||+|+
T Consensus         4 ~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~   43 (127)
T d2ef7a1           4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG   43 (127)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc
Confidence            4789999999999999999999999999999999999987

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.29  E-value=4.9e-07  Score=73.18  Aligned_cols=40  Identities=13%  Similarity=0.096  Sum_probs=37.2

Q ss_pred             cchhhhh--ccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRKMI--IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~dIM--~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .+|+++|  .+++.+|.+++++.+|++.|.+++.+.+||+|+
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~   43 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP   43 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeec
Confidence            5788998  578999999999999999999999999999988

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.29  E-value=2.9e-07  Score=76.12  Aligned_cols=61  Identities=16%  Similarity=0.303  Sum_probs=54.8

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ..+.+++++|++  +++++++++++. +|++.|.++++.++||+|++ |+++|+|+.+|++++..
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHH-HHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHHHH
T ss_pred             ccccchHHhccc--CCccCCCCChHH-HHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHHHH
Confidence            456789999985  778899999999 99999999999999999875 89999999999997654

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.24  E-value=1.2e-06  Score=72.03  Aligned_cols=41  Identities=7%  Similarity=0.235  Sum_probs=39.2

Q ss_pred             CcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          138 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       138 ~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      ..+|+++|.+++++|++++++.+|++.|.+++.+.+||+|+
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~   50 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT   50 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc
Confidence            56899999999999999999999999999999999999997

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.22  E-value=1.1e-06  Score=71.39  Aligned_cols=39  Identities=10%  Similarity=0.219  Sum_probs=37.7

Q ss_pred             chhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +|+++|.+++++|++++++.+|++.|.+++.+.+||+|+
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~   41 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD   41 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc
Confidence            789999999999999999999999999999999999987

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.20  E-value=6.7e-07  Score=71.66  Aligned_cols=61  Identities=13%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ..+..++++|.+  +++++++++++. ++++.|.++++.++||+|++ ++++|+|+.+|++++..
T Consensus        57 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          57 PDEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             -------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTT
T ss_pred             hcccchhhcccc--ceeecchhhHHH-HHHHHHHHcCcEEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            345679999985  678999999999 99999999999999999875 89999999999997653

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.20  E-value=9.7e-07  Score=71.08  Aligned_cols=74  Identities=24%  Similarity=0.343  Sum_probs=58.8

Q ss_pred             CCCCCHHHHHHHHHhhc----CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhh
Q 018757           54 GGDLTHDETTIIAGALE----LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKN  129 (351)
Q Consensus        54 ~G~L~~~E~~mI~~~l~----l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kD  129 (351)
                      .|.++.  ++++..+..    ..+.+++++|++  ++.++.+++++. ++++.|.+++++++||+++  |+++|+|+.+|
T Consensus        48 vGiit~--~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~D  120 (127)
T d2rc3a1          48 VGILTE--RDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLDD--GKVIGLLSIGD  120 (127)
T ss_dssp             EEEEEH--HHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHH
T ss_pred             EEEEEc--cchhhhhhhhcccccceeEeeeccc--eeEEeccCccHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHH
Confidence            355553  344444332    345789999985  778999999999 9999999999999999984  78999999999


Q ss_pred             hhccc
Q 018757          130 LLSVD  134 (351)
Q Consensus       130 Ll~~~  134 (351)
                      ++++.
T Consensus       121 il~~~  125 (127)
T d2rc3a1         121 LVKDA  125 (127)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98753

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=2.3e-06  Score=69.63  Aligned_cols=39  Identities=21%  Similarity=0.260  Sum_probs=35.9

Q ss_pred             chhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .+.++|.+++++|.+++++.+|+..|.+++.+.+||+|+
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~   43 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR   43 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc
Confidence            356678899999999999999999999999999999998

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.09  E-value=2.2e-06  Score=68.78  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=36.9

Q ss_pred             chhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +|+++|.++++++++++++.+|++.|.+++.+.+||++.
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~   40 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR   40 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEE
Confidence            588999999999999999999999999999999999965

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.09  E-value=1.7e-06  Score=69.42  Aligned_cols=73  Identities=12%  Similarity=0.217  Sum_probs=54.8

Q ss_pred             CCCCHHHHHHHHHhhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           55 GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        55 G~L~~~E~~mI~~~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      |.++..+   +.++..........+|+  ..++++++++++. +++++|.+++++++||++++ |+++|+|+.+|++++.
T Consensus        44 Givt~~D---i~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          44 GIITNRD---MRFISDYNAPISEHMTS--EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVI  116 (126)
T ss_dssp             EEEEHHH---HHHCSCSSSBTTTSCCC--SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             EEeEHHH---HHHhhccCCceeeeeec--cceeecCCCCCHH-HHHHHHHhcCCcEEEEEcCC-CeEEEEEEHHHHHHHh
Confidence            5666443   23333333333444444  3667899999999 99999999999999999875 8999999999999864

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.5e-06  Score=71.63  Aligned_cols=60  Identities=12%  Similarity=0.173  Sum_probs=52.9

Q ss_pred             CcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           71 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        71 l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      ....+|+++|++  .++++.+++++. +++++|.+++..++||.++  |+++|+|+.+|++++..
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l~  156 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHIA  156 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            346779999996  678999999999 8999999999999999874  78999999999998653

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=97.97  E-value=3.2e-06  Score=67.32  Aligned_cols=60  Identities=12%  Similarity=0.223  Sum_probs=53.4

Q ss_pred             cccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhcccc
Q 018757           72 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY  135 (351)
Q Consensus        72 ~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~~  135 (351)
                      .+.++.++|+.  ++.++++++++. ++++.|.+++...+||++++ |+++|+|+..|++++..
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvde~-g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          58 LDSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             TTSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHH
T ss_pred             ccccccccccC--ccEEECCCCCHH-HHHHHHHhcCceeeeeECCC-CeEEEEEEHHHHHHHHH
Confidence            35689999985  567899999999 99999999999999999886 89999999999998653

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=8.7e-06  Score=66.09  Aligned_cols=35  Identities=9%  Similarity=0.277  Sum_probs=32.7

Q ss_pred             hhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          144 MIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       144 IM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      +|..++.++.+++++.+|++.|.+++...+||+|+
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~   48 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE   48 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec
Confidence            46678999999999999999999999999999998

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=3.2e-06  Score=69.87  Aligned_cols=57  Identities=16%  Similarity=0.204  Sum_probs=50.3

Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      .+.++|++  .++++++++++. ++++.|.+++..++||++++.++++|+|+.+||+++.
T Consensus        97 ~~~~~~~~--~~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          97 VYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             eeeeeecc--ceEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            34678875  778999999999 9999999999999999986558999999999999865

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.87  E-value=1.9e-05  Score=65.01  Aligned_cols=39  Identities=18%  Similarity=0.401  Sum_probs=34.4

Q ss_pred             chhhhhc---cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          140 PLRKMII---RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       140 ~V~dIM~---r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      |+++++.   +++++|.+++++.+|++.|.+++...+||+|+
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~   43 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS   43 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc
Confidence            5566643   47899999999999999999999999999988

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=8.3e-06  Score=66.39  Aligned_cols=56  Identities=14%  Similarity=0.218  Sum_probs=48.2

Q ss_pred             ccccccccCcceEEEcCCCCchHHHHHHHHHcCCcEeeeeeCCCCcEEEEEEhhhhhccc
Q 018757           75 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        75 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sriPVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      ++...|.+  +++++.+++++. ++++.|.++++.++||++++ |+++|+|+.+||+++.
T Consensus        85 ~~~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~l~GiVt~~dii~~l  140 (145)
T d2v8qe1          85 QHRSHYFE--GVLKCYLHETLE-AIINRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQAL  140 (145)
T ss_dssp             GGCCSCCC--SCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             chhhhccC--CCeEECCCCcHH-HHHHHHHHcCceEEEEEccC-CEEEEEEEHHHHHHHH
Confidence            34455653  667899999999 99999999999999999875 8999999999999865

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.66  E-value=2.3e-05  Score=65.75  Aligned_cols=40  Identities=8%  Similarity=-0.020  Sum_probs=36.1

Q ss_pred             cchhhhhc--cCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          139 VPLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       139 ~~V~dIM~--r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .++.++|.  .+++++++++++.+|+..|.++++..+||+|.
T Consensus        20 ~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~   61 (179)
T d2ooxe1          20 RTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS   61 (179)
T ss_dssp             SBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET
T ss_pred             CEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeC
Confidence            46788875  57899999999999999999999999999986

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=88.09  E-value=0.0007  Score=57.98  Aligned_cols=105  Identities=10%  Similarity=0.009  Sum_probs=68.7

Q ss_pred             hhcCcccccccccccCcceEEEcCCCCchHHHHHHHHHcCCcE-------e------eeeeCCCCcEEEEEEhhhhhccc
Q 018757           68 ALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSR-------V------PVYSGNPTNIIGLILVKNLLSVD  134 (351)
Q Consensus        68 ~l~l~d~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~sr-------i------PVvd~~~~~IVGIVt~kDLl~~~  134 (351)
                      +..+.+...+.+|..  .........++. .+.+.+.......       +      .+.+- .+++.|++...++....
T Consensus        59 l~~~~~~~~~~~~~~--~~~~~~~~~~~~-~v~~il~~~~~~~~~~~l~~l~~~~~~~~~~i-~~~l~~f~dl~~l~~~~  134 (213)
T d1lkvx_          59 VKEIERNLEKKISGF--VSRTFSKVGGID-TAAEIMNNLDRTTEKKIMDKLVQENPELADEI-RRRMFVFEDILKLDDRS  134 (213)
T ss_dssp             HHHHHHHHHHHHHHH--HHHHHSSCCCHH-HHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHH-HHHHCCGGGGGGSCHHH
T ss_pred             HHHHHHHHHhccccc--cchhhhcchHHH-HHHHHHHhcccccchhheeeeeecChhhhhhH-hhhccccccHHHHcccc
Confidence            334455556666653  233455566666 6666665433211       0      11122 25677777777766543


Q ss_pred             ccCCcchhhhhccCCcEecCCCCHHHHHHHHHhCCCcEEEEEec
Q 018757          135 YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD  178 (351)
Q Consensus       135 ~~~~~~V~dIM~r~v~~V~~~~~L~daL~~m~~~~~~~apVVDe  178 (351)
                      .  ...++++|...+.++..+++-..+...|.++....+||+++
T Consensus       135 ~--~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~  176 (213)
T d1lkvx_         135 I--QLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKD  176 (213)
T ss_dssp             H--HHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHH
T ss_pred             H--hHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHH
Confidence            3  34677887777788899999999999999999999999988