Citrus Sinensis ID: 018802

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MFSSMNPLIRTASLSPMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYSDGGSTTDSASSGSDLSHENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQYQPQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGSGQGQTDMGLNQRTGVVDLEGGLSCAKSDTNSSLHPTPSSPQATSQQKRQRGSLPSMETNNRSISNSGNAMTYSHFKANDTKGDGRKTAVHMSDNNKVEVERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHcccEEEccccEEccccEEEccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHccccccEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
mfssmnplirtaslspmpdlslqisppsasdceannnkevrfdglvrnsyafysdggsttdsassgsdlshenrfynpaersynlgpsepmlslgfemadlcppppqqlprtinhhqqyqpqihghefkrnarmisgvkrsvraprmrwtTTLHAHFVHAVQllggheratpKSVLELMNVKDLTLAHVKSHLQMYRTVkstdkgsgqgqtdmglnqrtgvvdlegglscaksdtnsslhptpsspqatsqqkrqrgslpsmetnnrsisnsgnamtyshfkandtkgdgrktavhmsdnnkveverldsssltasddkllnleftlgrpswqmdyadqssnhelnllhc
Flexible Loop (DISEMBL)
MFSSMNPLIRTASLSPMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYSDGGsttdsassgsdlSHENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQYQPQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKstdkgsgqgqtdmglNQRTGVVDLEGGLSCAKSDTnsslhptpsspqatsqqkrqrgslpsmetnnrsisnsgnamtySHFKANDTKGDGRKTAVhmsdnnkveverldsssltasddklLNLEFTLGRPSWQMDYADQSSNHELNLLHC
Low Complexity Region (SEG)
MFSSMNPLIRTASLSPMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYsdggsttdsassgsdlsHENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQYQPQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGSGQGQTDMGLNQRTGVVDLEGGLSCAKSDTNSSLHPTPSSPQATSQQKRQRGSLPSMETNNRSISNSGNAMTYSHFKANDTKGDGRKTAVHMSDNNKVEVERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC
Disordered region (IsUnstruct)
*****************************************FDGLVRNSYAFY*********************************************************************************ISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR***************************************************************************************************************************LNLEFTLG**********************
Disordered Region (DISOPRED)
******************DL*******************************************************************************************************************************RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY*********************************************************************************************************************************TLG***************ELNLLHC
Disordered Region (DISEMBL)
MFSSMNPLIRTASLSPMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYSD**************SHENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQYQPQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV***********TDMGLNQRTGVVDLEGGLSCAK********************************NNRSISNSGNAMTYSHFKANDTKGDGRKTAVHMSDNNKVEVERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC
Disordered Region (DISPRO)
**************SPMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYSDG***********************ERSYNLGPSEPMLSLGFEMADLC******************************************PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKST***********************************SLHPTPSSPQATSQQKRQRGSLPSMETNNRSISNSGNAMTYSHFKANDTK***************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSSMNPLIRTASLSPMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYSDGGSTTDSASSGSDLSHENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQYQPQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGSGQGQTDMGLNQRTGVVDLEGGLSCAKSDTNSSLHPTPSSPQATSQQKRQRGSLPSMETNNRSISNSGNAMTYSHFKANDTKGDGRKTAVHMSDNNKVEVERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q9FJV5	276	Probable transcription fa	yes	no	0.62	0.786	0.473	2e-55
Q9C616	388	Probable transcription fa	no	no	0.277	0.25	0.7	7e-32
Q941I2	322	Probable transcription fa	no	no	0.214	0.232	0.842	2e-31
Q0J235	532	Probable transcription fa	no	no	0.56	0.368	0.419	5e-31
Q93WJ9	403	Transcription repressor K	no	no	0.225	0.196	0.759	1e-30
Q700D9	255	Putative Myb family trans	no	no	0.211	0.290	0.578	3e-17
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.157	0.133	0.654	8e-14
Q9SAK5	358	Myb family transcription	no	no	0.225	0.220	0.469	4e-13
Q9ZWJ9	664	Two-component response re	no	no	0.225	0.118	0.437	2e-09
Q9FGT7	635	Two-component response re	no	no	0.194	0.107	0.457	3e-09

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/285 (47%), Positives = 169/285 (59%), Gaps = 68/285 (23%)

Query: 71  HENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQ----YQPQIHGH 126
           HEN F+N           +P+LSLGF+                +HHQ+    +QPQI+G 
Sbjct: 55  HENNFFN-----------KPLLSLGFD----------------HHHQRRSNMFQPQIYGR 87

Query: 127 EFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL 186
           +FKR++  + G+KRS+RAPRMRWT+TLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL
Sbjct: 88  DFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL 147

Query: 187 AHVKSHLQMYRTVKSTDKGS-GQGQTDMGLNQRTGVVDLEGGLSCAKSDTNSSLHPTPSS 245
           AHVKSHLQMYRTVK TDKGS G+G+ +    QR     +E   +  ++D  +      +S
Sbjct: 148 AHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQR-----IEDNNNNEEADEGTD----TNS 198

Query: 246 PQATSQQKRQRGSLPSMETNNRSISNSGNAMTYSHFKANDTKGDGRKTAVHMSDNNKVEV 305
           P ++S QK QR S  S +  +RSIS       YSH            T  H  DN + E 
Sbjct: 199 PNSSSVQKTQRASWSSTKEVSRSISTQA----YSHL----------GTTHHTKDNEEKED 244

Query: 306 ERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC 350
             +            LNL+FTLGRPSW M+YA+ SS  +L LL C
Sbjct: 245 TNIH-----------LNLDFTLGRPSWGMEYAEPSS--DLTLLKC 276

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score =  138 bits (347), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 80/100 (80%), Gaps = 3/100 (3%)

Query: 124 HGHEFKRNARMISGV--KRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNV 181
           H H+    AR +     KRS+RAPRMRWTTTLHA FVHAV+LLGGHERATPKSVLELM+V
Sbjct: 191 HHHQTLNRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDV 250

Query: 182 KDLTLAHVKSHLQMYRTVKSTDKGSG-QGQTDMGLNQRTG 220
           KDLTLAHVKSHLQMYRTVK+TDK +   GQ+D+  N  +G
Sbjct: 251 KDLTLAHVKSHLQMYRTVKTTDKAAASSGQSDVYENGSSG 290

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 70/76 (92%), Gaps = 1/76 (1%)

Query: 138 VKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197
            KR VRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM+V+DLTLAHVKSHLQMYR
Sbjct: 158 AKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYR 217

Query: 198 TVKSTDK-GSGQGQTD 212
           T+KST+K  +  GQ+D
Sbjct: 218 TIKSTEKPTTSSGQSD 233

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score =  135 bits (339), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/210 (41%), Positives = 111/210 (52%), Gaps = 14/210 (6%)

Query: 138 VKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197
            KRS+RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYR
Sbjct: 318 AKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 377

Query: 198 TVKSTDKGSGQ------GQTDMGLNQRTGVVDLEGGLSCAKSDTNSSLHPTPSSPQATSQ 251
           TVKSTDK +        G  D             G   C +      +     +    S 
Sbjct: 378 TVKSTDKPAASSGPADGGSGDEEFAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEHGRSA 437

Query: 252 QKRQRGSLPSMETNNRSISNSGNAMT--YSH------FKANDTKGDGRKTAVHMSDNNKV 303
            +    S+      +   S++GN  T  +S+        +N    D  ++    S    +
Sbjct: 438 SEGAASSVGGGGGGDMDQSSAGNTSTTRWSNSSRDPWLSSNSCNMDAHRSVGLSSPIENL 497

Query: 304 EVERLDSSSLTASDDKLLNLEFTLGRPSWQ 333
           E  R  SS ++  +    +LEFTLGRP W 
Sbjct: 498 EPCRSSSSQVSNHELSSPSLEFTLGRPDWH 527

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 73/83 (87%), Gaps = 4/83 (4%)

Query: 138 VKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197
            KRS+RAPRMRWT++LHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYR
Sbjct: 213 TKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 272

Query: 198 TVKSTDK----GSGQGQTDMGLN 216
           TVK+T+K      G G+ +MG+N
Sbjct: 273 TVKTTNKPAASSDGSGEEEMGIN 295

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 56/76 (73%), Gaps = 2/76 (2%)

Query: 129 KRNARMISGVKRSVRAP--RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL 186
           + N  +I GV+  VR+P  R+RWT  LH  FVHAV LLGG  +ATPK VL++M+VK LT+
Sbjct: 6   RSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTI 65

Query: 187 AHVKSHLQMYRTVKST 202
           +HVKSHLQMYR  + T
Sbjct: 66  SHVKSHLQMYRGSRIT 81

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 200
           RMRWT  LH  FV AV  LGG ERATPK+VL+L+N   LT+ HVKSHLQ YRT +
Sbjct: 233 RMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTAR 287

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDK 204
           PR+RWT  LH  FV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K   K
Sbjct: 35  PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94

Query: 205 GSGQGQTDMGLNQRTGVVDLE 225
             G   T  G   R   +D++
Sbjct: 95  EYGDHSTKEG--SRASAMDIQ 113

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 200
           S++ PR+ W+  LH  FV AV  LG  ++A PK +LE+MNV  LT  +V SHLQ YR   
Sbjct: 213 SLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRIYL 271

Query: 201 STDKGSGQGQTDMGLNQRTG 220
               G  Q Q +M  +  TG
Sbjct: 272 RRLGGVSQHQGNMNHSFMTG 291

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT-VKS 201
           + PR+ W+  LH  FV AVQ LG  ++A PK +L+LM+++ LT  +V SHLQ YR  +K 
Sbjct: 193 KKPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRLYLKK 251

Query: 202 TDKGSGQGQT 211
            D+G  Q  T
Sbjct: 252 IDEGQQQNMT 261

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
255538462	347	hypothetical protein RCOM_1592640 [Ricin	0.965	0.974	0.651	1e-106
225458467	338	PREDICTED: probable transcription factor	0.914	0.946	0.654	1e-106
302142391	287	unnamed protein product [Vitis vinifera]	0.72	0.878	0.681	8e-89
224137322	293	predicted protein [Populus trichocarpa]	0.814	0.972	0.569	2e-72
356564221	331	PREDICTED: probable transcription factor	0.92	0.972	0.495	2e-67
357438027	296	Myb family transcription factor-like pro	0.791	0.935	0.480	1e-63
224063569	193	predicted protein [Populus trichocarpa]	0.548	0.994	0.681	2e-61
356509706	241	PREDICTED: probable transcription factor	0.622	0.904	0.629	2e-59
15239014	276	aberrant testa shape protein/transcripti	0.62	0.786	0.473	1e-53
297791747	277	hypothetical protein ARALYDRAFT_494773 [	0.725	0.916	0.445	4e-53

>gi|255538462|ref|XP_002510296.1| hypothetical protein RCOM_1592640 [Ricinus communis] gi|223550997|gb|EEF52483.1| hypothetical protein RCOM_1592640 [Ricinus communis]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/359 (65%), Positives = 263/359 (73%), Gaps = 21/359 (5%)

Query: 1   MFSSMNPLIRTASLSPMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYSDGGSTT 60
           MFSS N ++RTAS   +PDLSLQISPP ASDCEAN        G+     A Y D  STT
Sbjct: 1   MFSSSNLMMRTAS--SLPDLSLQISPPLASDCEANEMGTNYNGGITWK--ALYCDRSSTT 56

Query: 61  DSASSGSDLSHENRFYNPAERSYN--LGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQ 118
           DS SSGSDLSHEN   N  ERSYN  LGPSEP LSLGFEMAD+  PP  QLPR +NHH  
Sbjct: 57  DSGSSGSDLSHENGTLN-QERSYNNNLGPSEPTLSLGFEMADMTTPPALQLPRNLNHHHH 115

Query: 119 YQPQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLEL 178
           +QPQI+G EFKRN RMISGVKRS+RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLEL
Sbjct: 116 HQPQIYGREFKRNGRMISGVKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLEL 175

Query: 179 MNVKDLTLAHVKSHLQMYRTVKSTDKGSGQGQTDMGLNQRTGVVDLEGGLSCAKSDTN-- 236
           MNVKDLTLAHVKSHLQMYRTVKSTDKG+GQGQTDMGL QR G+VD++ G+S  K+D N  
Sbjct: 176 MNVKDLTLAHVKSHLQMYRTVKSTDKGTGQGQTDMGLKQRAGIVDVDAGVSAGKADANPC 235

Query: 237 ---SSLHPTPSSPQATSQQKRQ-RGSL-PSMETNNRSISNSGNAMTYSHFKANDTKGDGR 291
              +   P   +    S QK Q RGS   SMET + +ISNS  A+ YSHF A+DTK +G 
Sbjct: 236 CSLNPPPPPTPTTPLPSVQKTQIRGSWSSSMETRDINISNS-EALIYSHFSAHDTKENGP 294

Query: 292 KTAVHMSDNNKVEVERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC 350
              +HMSD     V+    SS  +S D L+NLEFTLGRPSWQMDYA+  S++EL LL C
Sbjct: 295 MADLHMSD----RVKESLDSSSLSSTDMLVNLEFTLGRPSWQMDYAE--SSNELTLLKC 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458467|ref|XP_002282153.1| PREDICTED: probable transcription factor KAN4-like [Vitis vinifera]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/350 (65%), Positives = 262/350 (74%), Gaps = 30/350 (8%)

Query: 15  SPMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYSDGGSTTDSASSGSDLSHENR 74
           SP+PDLSLQISPPS SDCE    KEV +DG ++ S  FYSD  S TDS SSGSDLSHEN 
Sbjct: 5   SPLPDLSLQISPPSISDCEV---KEVGYDGFMKKS--FYSDRSSATDSGSSGSDLSHENG 59

Query: 75  FYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQY-QPQIHGHEFKRNAR 133
           F++P E  +N GP EPMLSLG EMA L PPP  +LPR ++H+    QPQI+G EFKRN+R
Sbjct: 60  FFSP-ESGFNRGPVEPMLSLGLEMAALNPPP-LELPRNLHHNHHNHQPQIYGREFKRNSR 117

Query: 134 MISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHL 193
           M++G KRS+RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHL
Sbjct: 118 MMNGSKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHL 177

Query: 194 QMYRTVKSTDKG---------SGQGQTDMGLNQRTGVVDLE-GGLSCAKSDTNSSLH--- 240
           QMYRTVKSTDKG         +GQGQTDMGLNQRTG+  +E GGLSC K+D   S     
Sbjct: 178 QMYRTVKSTDKGTARAMALCIAGQGQTDMGLNQRTGIGQVELGGLSCDKADATPSFSSNT 237

Query: 241 PTPSSPQATSQQKRQRGSLPSMETNNRSISNSGNAMTYSHFKANDTKGDGRKTAVHMSDN 300
           P PS+PQ  S   R   SL SMETN+    +  N + YSH  ANDTK +G K A+H+++ 
Sbjct: 238 PQPSTPQKIS---RSSWSL-SMETNDEGRLSHENGLKYSHLMANDTKMEGHKVALHVAEG 293

Query: 301 NKVEVERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC 350
            K   ER+DSS+L+ S D LLNLEFTLGRPSWQ+DYADQS N EL LL C
Sbjct: 294 PK---ERVDSSALSPS-DMLLNLEFTLGRPSWQIDYADQSPN-ELALLKC 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142391|emb|CBI19594.3| unnamed protein product [Vitis vinifera]

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 182/267 (68%), Positives = 208/267 (77%), Gaps = 15/267 (5%)

Query: 89  EPMLSLGFEMADLCPPPPQQLPRTINHHQQY-QPQIHGHEFKRNARMISGVKRSVRAPRM 147
           EPMLSLG EMA L PPP  +LPR ++H+    QPQI+G EFKRN+RM++G KRS+RAPRM
Sbjct: 31  EPMLSLGLEMAALNPPP-LELPRNLHHNHHNHQPQIYGREFKRNSRMMNGSKRSIRAPRM 89

Query: 148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGSG 207
           RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKG+G
Sbjct: 90  RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTG 149

Query: 208 QGQTDMGLNQRTGVVDLE-GGLSCAKSDTNSSLH---PTPSSPQATSQQKRQRGSLPSME 263
           QGQTDMGLNQRTG+  +E GGLSC K+D   S     P PS+PQ  S   R   SL SME
Sbjct: 150 QGQTDMGLNQRTGIGQVELGGLSCDKADATPSFSSNTPQPSTPQKIS---RSSWSL-SME 205

Query: 264 TNNRSISNSGNAMTYSHFKANDTKGDGRKTAVHMSDNNKVEVERLDSSSLTASDDKLLNL 323
           TN+    +  N + YSH  ANDTK +G K A+H+++  K   ER+DSS+L+ S D LLNL
Sbjct: 206 TNDEGRLSHENGLKYSHLMANDTKMEGHKVALHVAEGPK---ERVDSSALSPS-DMLLNL 261

Query: 324 EFTLGRPSWQMDYADQSSNHELNLLHC 350
           EFTLGRPSWQ+DYADQS N EL LL C
Sbjct: 262 EFTLGRPSWQIDYADQSPN-ELALLKC 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137322|ref|XP_002327097.1| predicted protein [Populus trichocarpa] gi|222835412|gb|EEE73847.1| predicted protein [Populus trichocarpa]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 196/344 (56%), Positives = 223/344 (64%), Gaps = 59/344 (17%)

Query: 13  SLSPMPDLSLQISPPSASDCEANNNKEVRFDG-LVRNSYAFYSDGGSTTDSASSGSDLSH 71
           S+SP PDLSLQISPPS    EA   KE  +DG L R   A  SD  STTDS SSGSDLSH
Sbjct: 3   SVSPFPDLSLQISPPSV---EA---KETGYDGGLTRK--ALCSDRSSTTDSGSSGSDLSH 54

Query: 72  ENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQYQPQIHGHEFKRN 131
           EN F N  ERSYNLGPSEP LSLGF+MADL      QLPR +NHH  +QPQI+G  FKR+
Sbjct: 55  ENGFLN-QERSYNLGPSEPTLSLGFDMADLSSQT-LQLPRNLNHHH-HQPQIYGRNFKRS 111

Query: 132 ARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKS 191
           ARMI+GVKRSVRAPRMRWTTTLHAHFVHAV+LLGGHERATPKSVLELMNVKDLTLAHVKS
Sbjct: 112 ARMINGVKRSVRAPRMRWTTTLHAHFVHAVRLLGGHERATPKSVLELMNVKDLTLAHVKS 171

Query: 192 HLQMYRTVKSTDKGSGQGQTDMGLNQRTGVVDLEGGLSCAKSDTNSSLHPTPSSPQATSQ 251
           HLQMYRTVKSTD+G G+                   LS  K+D N+        P     
Sbjct: 172 HLQMYRTVKSTDRGPGKLYC----------------LSSGKADANNL-----PQPLNNPP 210

Query: 252 QKRQRGSLPSMETNNRSISNSGN-----AMTYSHFKANDTKGDGRKTAVHMSDNNKVEVE 306
                  L S + N RS+ +  N     A+TY + +A+D                    +
Sbjct: 211 PSPPPPPLSSTQKNQRSLGDEKNISSLEALTYVNVEAHD------------------HSK 252

Query: 307 RLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC 350
           RLDSSS ++S D LLNLEFTLGRPSWQ+DYA+  + +EL LL C
Sbjct: 253 RLDSSS-SSSSDMLLNLEFTLGRPSWQLDYAE--TTNELTLLKC 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564221|ref|XP_003550354.1| PREDICTED: probable transcription factor KAN4-like [Glycine max]

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 178/359 (49%), Positives = 222/359 (61%), Gaps = 37/359 (10%)

Query: 1   MFSSMNPLIRTASLSPM--PDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYSD-GG 57
           MF++   +++T   SP   PDLSL ISPPS SD EA  +    F  ++      YSD   
Sbjct: 1   MFTNSQTVMQTLLSSPSAEPDLSLNISPPSISDSEAAKDVVGSFGKVL------YSDICS 54

Query: 58  STTDSASSGSDLSHENRFYNPAERSYNLGPSEPMLSLGFEMADLCPP--PPQQLPRTINH 115
           ++   +S GSDLSHE  F+N     +     EP L LGF   DL P     Q +PR+ NH
Sbjct: 55  TSDSGSSGGSDLSHE--FHNLGHHHHR----EPTLKLGFGTVDLNPHHHQVQGVPRSFNH 108

Query: 116 HQQY-QPQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKS 174
           H    QP I+G +FKR+AR+++GVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKS
Sbjct: 109 HHHLLQPHIYGRDFKRSARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKS 168

Query: 175 VLELMNVKDLTLAHVKSHLQMYRTVKSTDKG---SGQGQTDMGLNQRTGVVDLEGGLSCA 231
           VLELMNVKDLTLAHVKSHLQMYRTVKSTDKG   +G GQTD+GLN R G +++       
Sbjct: 169 VLELMNVKDLTLAHVKSHLQMYRTVKSTDKGISTAGHGQTDIGLNPRLG-INVHLHAPSP 227

Query: 232 KSDTNSSLHPTPSSPQATSQQKRQRGSLPSMETNNRSISNSGNAMTYSHFKANDTKGDGR 291
             DT     P    P   SQ+   + S+ +   N+R        +TYSH K N+   +  
Sbjct: 228 ICDT-----PNLPDPIQNSQRTPWQSSIETKTDNSRQ-EEPEIGLTYSHLKGNN---NNN 278

Query: 292 KTAVHMSDNNKVEVERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC 350
           +T V   +N+      LDSS L+ S + +L+LEFTLGRP+WQ D+ + S   EL LL C
Sbjct: 279 ETMVDGHNNSG----GLDSSPLSRSSEAMLDLEFTLGRPNWQKDHPESSR--ELTLLKC 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438027|ref|XP_003589289.1| Myb family transcription factor-like protein [Medicago truncatula] gi|355478337|gb|AES59540.1| Myb family transcription factor-like protein [Medicago truncatula]

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 169/352 (48%), Positives = 204/352 (57%), Gaps = 75/352 (21%)

Query: 14  LSPM--PDLSLQISPPS-ASDCEANNNKEVRFDGLVRNSYAFYSDGGSTTDSASSGSDLS 70
            SP+  PDLSL IS PS  SD E            + N  +      +T+DSASSGS+LS
Sbjct: 5   FSPLLEPDLSLNISLPSNISDSEPKG---------ITNICSI----STTSDSASSGSELS 51

Query: 71  HENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPP----------QQLPRTINHHQQYQ 120
           HEN F  P +R       +P L LGF  +DL  P            Q + R  N H  +Q
Sbjct: 52  HENPFIYPHQR-------DPTLRLGFGNSDLMNPHHHNHHLHRHQVQGVSRNFNQH--FQ 102

Query: 121 PQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMN 180
           P I+G +FKRN R+++GVKRSVRAPRMRWTTTLH+HFVHAVQLLGGHERATPKSVLELMN
Sbjct: 103 PHIYGRDFKRNTRVVNGVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMN 162

Query: 181 VKDLTLAHVKSHLQMYRTVKSTDK-GSGQGQTDMGLNQRTGVVDLEGGLSCAKSDTNSSL 239
           VKDLTLAHVKSHLQMYRTVK+TDK G+G G   +   Q   +V L G         NSS 
Sbjct: 163 VKDLTLAHVKSHLQMYRTVKTTDKSGAGHG---ILQTQGINIVPLHGA--------NSSA 211

Query: 240 HPTPSSPQATSQQKRQRGSLPSMETN-NRSISNSGNAMTYSHFKANDTKGDGRKTAVHMS 298
              P+ PQ      R     PS+ETN N +   S   +TYS  K NDT            
Sbjct: 212 DERPNLPQPLQNSLRTSWQ-PSIETNTNNTEEKSEIGLTYSQLKENDTM----------- 259

Query: 299 DNNKVEVERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC 350
                 V+RLDS+       +L++LEFTLGRP+W  D+A+  S+ EL+LL C
Sbjct: 260 ------VKRLDSA-------QLIDLEFTLGRPNWGKDHAE--SSRELSLLKC 296

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063569|ref|XP_002301209.1| predicted protein [Populus trichocarpa] gi|222842935|gb|EEE80482.1| predicted protein [Populus trichocarpa]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/201 (68%), Positives = 154/201 (76%), Gaps = 9/201 (4%)

Query: 8   LIRTASLSPMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYSDGGSTTDSASSGS 67
           ++R AS  P P LSLQISPP+  + +   +      GL R   A   D  S TDS SSGS
Sbjct: 1   MMRAAS--PFPYLSLQISPPAVLEAKETGDD----GGLARK--ALCKDRSSATDSGSSGS 52

Query: 68  DLSHENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQYQPQIHGHE 127
           DLSHEN  +N    +YNLGPS+P LSLGF+MADL  P   QLPR +NH   + PQI+G +
Sbjct: 53  DLSHENGLFNQDRIAYNLGPSQPTLSLGFDMADLSSPS-FQLPRNLNHLHHHNPQIYGGD 111

Query: 128 FKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLA 187
           FKR+ARMISGV+RS RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLA
Sbjct: 112 FKRSARMISGVRRSKRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLA 171

Query: 188 HVKSHLQMYRTVKSTDKGSGQ 208
           HVKSHLQMYRTVKSTDKGSG+
Sbjct: 172 HVKSHLQMYRTVKSTDKGSGK 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509706|ref|XP_003523587.1| PREDICTED: probable transcription factor KAN4-like [Glycine max]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/224 (62%), Positives = 167/224 (74%), Gaps = 6/224 (2%)

Query: 16  PMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAF-YSDGGSTTDSASSGSDLSHENR 74
           P PDLSL ISPP  SD +A    E+  +GL+  +    Y+D  ST+DS SSGSDLSHEN 
Sbjct: 8   PEPDLSLNISPPFTSDSDAKK-VEISCNGLLTLTTKTLYNDMCSTSDSGSSGSDLSHENG 66

Query: 75  FYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQ--LPRT-INHHQQYQPQIHGHEFKRN 131
           F+   + +YNLG  EP LSLG E  +  P P QQ  L R   +H   YQP  +  +FKRN
Sbjct: 67  FFGHTDTAYNLGHHEPTLSLGIETTNSNPYPVQQGALSRNNFSHFHNYQPHSNTLDFKRN 126

Query: 132 ARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKS 191
           AR+I GVKR+ RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL+HVKS
Sbjct: 127 ARVIHGVKRNARAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLSHVKS 186

Query: 192 HLQMYRTVKSTDKGS-GQGQTDMGLNQRTGVVDLEGGLSCAKSD 234
           HLQMYRTVKS+DKGS G GQT +GL+Q+ G+VDL G L+C +++
Sbjct: 187 HLQMYRTVKSSDKGSAGYGQTGIGLSQKPGIVDLYGVLACERAN 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239014|ref|NP_199077.1| aberrant testa shape protein/transcription facto [Arabidopsis thaliana] gi|75333971|sp|Q9FJV5.1|KAN4_ARATH RecName: Full=Probable transcription factor KAN4; AltName: Full=Protein ABERRANT TESTA SHAPE; AltName: Full=Protein KANADI 4 gi|10177141|dbj|BAB10501.1| unnamed protein product [Arabidopsis thaliana] gi|15723593|gb|AAL05439.1| GARP-like putative transcription factor KANADI4 [Arabidopsis thaliana] gi|109946461|gb|ABG48409.1| At5g42630 [Arabidopsis thaliana] gi|332007455|gb|AED94838.1| aberrant testa shape protein/transcription facto [Arabidopsis thaliana]

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/285 (47%), Positives = 169/285 (59%), Gaps = 68/285 (23%)

Query: 71  HENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQ----YQPQIHGH 126
           HEN F+N           +P+LSLGF+                +HHQ+    +QPQI+G 
Sbjct: 55  HENNFFN-----------KPLLSLGFD----------------HHHQRRSNMFQPQIYGR 87

Query: 127 EFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL 186
           +FKR++  + G+KRS+RAPRMRWT+TLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL
Sbjct: 88  DFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL 147

Query: 187 AHVKSHLQMYRTVKSTDKGS-GQGQTDMGLNQRTGVVDLEGGLSCAKSDTNSSLHPTPSS 245
           AHVKSHLQMYRTVK TDKGS G+G+ +    QR     +E   +  ++D  +      +S
Sbjct: 148 AHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQR-----IEDNNNNEEADEGTD----TNS 198

Query: 246 PQATSQQKRQRGSLPSMETNNRSISNSGNAMTYSHFKANDTKGDGRKTAVHMSDNNKVEV 305
           P ++S QK QR S  S +  +RSIS       YSH            T  H  DN + E 
Sbjct: 199 PNSSSVQKTQRASWSSTKEVSRSISTQA----YSHL----------GTTHHTKDNEEKED 244

Query: 306 ERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC 350
             +            LNL+FTLGRPSW M+YA+ SS  +L LL C
Sbjct: 245 TNIH-----------LNLDFTLGRPSWGMEYAEPSS--DLTLLKC 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791747|ref|XP_002863758.1| hypothetical protein ARALYDRAFT_494773 [Arabidopsis lyrata subsp. lyrata] gi|297309593|gb|EFH40017.1| hypothetical protein ARALYDRAFT_494773 [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 156/350 (44%), Positives = 196/350 (56%), Gaps = 96/350 (27%)

Query: 13  SLSPMPDLSLQISPPSASDCEANNNKEVRFDGLVRNSYAFYSDGG-----STTDSASSGS 67
           +L+ +PDLSLQIS P                    NS+A     G     +++DS SS S
Sbjct: 12  ALNSIPDLSLQISLP--------------------NSHAGKPLHGGDRSSTSSDSGSSLS 51

Query: 68  DLSHENRFYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQ----YQPQI 123
           +LSHEN F+N           +P+LSLGFE                +HHQ+    +QPQI
Sbjct: 52  ELSHENNFFN-----------KPLLSLGFEH---------------HHHQRNSNMFQPQI 85

Query: 124 HGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKD 183
           +G +FKR++  + G+KRS+RAPRMRWT+TLHAHFVHAVQLLGGHERATPKSVLELMNVKD
Sbjct: 86  YGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKD 145

Query: 184 LTLAHVKSHLQMYRTVKSTDKG-SGQGQTDMGLNQRTGVVDLEGGLSCAKSDTNSSLHPT 242
           LTLAHVKSHLQMYRTVK TDKG SG+G+ +    QR     +E   +  ++D  +     
Sbjct: 146 LTLAHVKSHLQMYRTVKCTDKGSSGEGKVEKEAEQR-----IEDNNNNEEADEGTDT--- 197

Query: 243 PSSPQATSQQKRQRGSLPSMETNNRSISNSGNAM--TYSHFKANDTKGDGRKTAVHMSDN 300
            +SP +++ QK QR    S +   RSIS   +    T  H K N+ K     T +H    
Sbjct: 198 -NSPNSSTVQKTQRAPWSSTKGVPRSISTQADPHLGTTQHTKENEEK---EATNIH---- 249

Query: 301 NKVEVERLDSSSLTASDDKLLNLEFTLGRPSWQMDYADQSSNHELNLLHC 350
                               LNLEFTLGRPSW MDYA+ SS  +L LL C
Sbjct: 250 --------------------LNLEFTLGRPSWGMDYAEPSS--DLTLLKC 277

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2163852	276	ATS "AT5G42630" [Arabidopsis t	0.494	0.626	0.541	1e-56
TAIR|locus:2028346	388	KAN2 "AT1G32240" [Arabidopsis	0.674	0.608	0.385	1.7e-38
TAIR|locus:2171427	403	KAN "KANADI" [Arabidopsis thal	0.594	0.516	0.415	4.4e-36
UNIPROTKB|Q0J235	532	RL9 "Probable transcription fa	0.554	0.364	0.451	2.3e-33
TAIR|locus:505006489	322	KAN3 "AT4G17695" [Arabidopsis	0.385	0.419	0.534	1.1e-30
TAIR|locus:2041145	256	AT2G02060 [Arabidopsis thalian	0.191	0.261	0.608	4.4e-20
TAIR|locus:2204518	255	AT1G14600 "AT1G14600" [Arabido	0.511	0.701	0.358	5.1e-19
TAIR|locus:2041539	255	AT2G42660 "AT2G42660" [Arabido	0.26	0.356	0.489	1.1e-17
TAIR|locus:2063141	410	AT2G40260 "AT2G40260" [Arabido	0.285	0.243	0.475	3.5e-17
TAIR|locus:2125771	166	AT4G04580 "AT4G04580" [Arabido	0.188	0.397	0.514	1.7e-16

TAIR|locus:2163852 ATS "AT5G42630" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
 Identities = 104/192 (54%), Positives = 133/192 (69%)

Query:   114 NHHQQ----YQPQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHER 169
             +HHQ+    +QPQI+G +FKR++  + G+KRS+RAPRMRWT+TLHAHFVHAVQLLGGHER
Sbjct:    71 HHHQRRSNMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHER 130

Query:   170 ATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGS-GQGQTDMGLNQRTGVVDLEGGL 228
             ATPKSVLELMNVKDLTLAHVKSHLQMYRTVK TDKGS G+G+ +    QR     +E   
Sbjct:   131 ATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGSPGEGKVEKEAEQR-----IEDNN 185

Query:   229 SCAKSDTNSSLHPTPSSPQATSQQKRQRGSLPSMETNNRSISNSGNAM--TYSHFKANDT 286
             +  ++D  +  +    SP ++S QK QR S  S +  +RSIS    +   T  H K N+ 
Sbjct:   186 NNEEADEGTDTN----SPNSSSVQKTQRASWSSTKEVSRSISTQAYSHLGTTHHTKDNEE 241

Query:   287 KGDGRKTAVHMS 298
             K D   T +H++
Sbjct:   242 KED---TNIHLN 250

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0048481 "ovule development" evidence=IMP

GO:0080060 "integument development" evidence=IGI;IMP

GO:0005618 "cell wall" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2028346 KAN2 "AT1G32240" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 104/270 (38%), Positives = 141/270 (52%)

Query:    75 FYNPAERSYNLGPSEPMLSLGFEMADLCPPPPQQLPRTINHHQQYQ------PQIHGHEF 128
             ++NP    +   P  P     F+ + L P      P    ++  +       P  H H  
Sbjct:   136 YHNPPPHHHPHRPPPPCFP--FDPSSLIPSSSTSSPALTGNNNSFNTSSVSNPNYHNHHH 193

Query:   129 K--RNARMISG--VKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDL 184
             +    AR +     KRS+RAPRMRWTTTLHA FVHAV+LLGGHERATPKSVLELM+VKDL
Sbjct:   194 QTLNRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDL 253

Query:   185 TLAHVKSHLQMYRTVKSTDKGSGQ-GQTDMGLNQRTGVVDLEGGLSCAKSDTNSSLHPTP 243
             TLAHVKSHLQMYRTVK+TDK +   GQ+D+  N  +G  + +  +     D N     + 
Sbjct:   254 TLAHVKSHLQMYRTVKTTDKAAASSGQSDVYENGSSGDNNSDDWMF----DMNRK---SR 306

Query:   244 SSPQATSQQKRQRG----SLPSMETNNRSISNSGNAMTYSHFKANDTKGDGRKTAVHMSD 299
              S + T+  ++  G    S      + + I N    M  S     + + DG+      S 
Sbjct:   307 DSEELTNPLEKSNGLWTNSSGEARLHGKLIDNVAEIMLPS-----EKELDGK-----CSS 356

Query:   300 NNKVEVERLDSSSLTASDDKLLNLEFTLGR 329
               ++  E + SSS++ +     NLEFTLGR
Sbjct:   357 YERISSEEMSSSSISGTSPFKPNLEFTLGR 386

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048440 "carpel development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2171427 KAN "KANADI" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
 Identities = 98/236 (41%), Positives = 131/236 (55%)

Query:   114 NHHQQY---------QPQIHGHEFKR--NARMISGV--KRSVRAPRMRWTTTLHAHFVHA 160
             +HH QY          P  H H       +R +  +  KRS+RAPRMRWT++LHA FVHA
Sbjct:   176 HHHNQYGVVGSSDSSSPHHHNHHHHGMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHA 235

Query:   161 VQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDK----GSGQGQTDMGLN 216
             V+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRTVK+T+K      G G+ +MG+N
Sbjct:   236 VELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGIN 295

Query:   217 QRTGVVDLEGGLSCAKSDTNSSLHPTPSSPQATSQQKRQRGSLPSMETNNRSISNSGNAM 276
                 V         A+SD ++SLH        +S Q R   S  S ET   S + S +  
Sbjct:   296 GNE-VHHQSSTDQRAQSD-DTSLH---QETDISSTQPRWSNS--SRETWPLSNNCSSDID 348

Query:   277 TYSHFKANDTKGDGRKTAVHMSDNNKVEVERLDSSSLTASDDKLLNLEFTLGRPSW 332
             T     +       +++++   +    +  +    +L+  +    +LEFTLGRP W
Sbjct:   349 TMIRTSSTSMISHYQRSSIQNQEQRSNDQAKR-CGNLSCENP---SLEFTLGRPDW 400

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0009956 "radial pattern formation" evidence=IMP

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010158 "abaxial cell fate specification" evidence=IMP

GO:0048440 "carpel development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0J235 RL9 "Probable transcription factor RL9" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 364 (133.2 bits), Expect = 2.3e-33, P = 2.3e-33
 Identities = 94/208 (45%), Positives = 116/208 (55%)

Query:   139 KRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198
             KRS+RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRT
Sbjct:   319 KRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 378

Query:   199 VKSTDK-GSGQGQTDMGLNQRT----GVVDLEGGLS-CAKSDTNSSLHPTPSSPQATSQQ 252
             VKSTDK  +  G  D G         G     GG S C +      +     +    S  
Sbjct:   379 VKSTDKPAASSGPADGGSGDEEFAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEHGRSAS 438

Query:   253 KRQRGSLPSMETNNRSISNSGNAMT--YSHFKAND-TKGDGRKTAVHMSDNNKVEVERLD 309
             +    S+      +   S++GN  T  +S+   +     +      H S      +E L+
Sbjct:   439 EGAASSVGGGGGGDMDQSSAGNTSTTRWSNSSRDPWLSSNSCNMDAHRSVGLSSPIENLE 498

Query:   310 ---SSSLTASDDKLLN--LEFTLGRPSW 332
                SSS   S+ +L +  LEFTLGRP W
Sbjct:   499 PCRSSSSQVSNHELSSPSLEFTLGRPDW 526

GO:0005634 "nucleus" evidence=IDA

GO:0010158 "abaxial cell fate specification" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

TAIR|locus:505006489 KAN3 "AT4G17695" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 78/146 (53%), Positives = 95/146 (65%)

Query:   139 KRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198
             KR VRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM+V+DLTLAHVKSHLQMYRT
Sbjct:   159 KRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 218

Query:   199 VKSTDK---GSGQGQTDMG--LNQRTGVVDLEGGLSCAKSDTNSSLHPTPSSPQATSQQK 253
             +KST+K    SGQ   + G  +N      +L G  + + S+    L    SS    S  +
Sbjct:   219 IKSTEKPTTSSGQSDCENGSQVNSEREARNLTGLWNNSSSEARFQLKAKASSGVDISSNE 278

Query:   254 RQ--RGSLPSMETNNRSISNSGNAMT 277
              +      PS    N  +S+  +++T
Sbjct:   279 NEWKNRRCPS----NERLSSDSSSLT 300

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041145 AT2G02060 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
 Identities = 42/69 (60%), Positives = 52/69 (75%)

Query:   131 NARMISGVKRSVRAP--RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAH 188
             N     GV+  VR+P  R+RWT  LH  FVHAV++LGG  RATPK VL++M+VK LT++H
Sbjct:    14 NGNKFHGVRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISH 73

Query:   189 VKSHLQMYR 197
             VKSHLQMYR
Sbjct:    74 VKSHLQMYR 82

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2204518 AT1G14600 "AT1G14600" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 70/195 (35%), Positives = 101/195 (51%)

Query:   129 KRNARMISGVKRSVRAP--RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTL 186
             + N  +I GV+  VR+P  R+RWT  LH  FVHAV LLGG  +ATPK VL++M+VK LT+
Sbjct:     6 RSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTI 65

Query:   187 AHVKSHLQMYRTVKSTDKGSGQGQTDMGLNQRT---GVVD-LEGGLSC-AKSDTNSSLHP 241
             +HVKSHLQMYR  + T  G  +  +     +R       D L   LS  A++D     H 
Sbjct:    66 SHVKSHLQMYRGSRITLLGKPEESSSPSSRRRRRQDNEEDHLHDNLSVHARNDCLLGFHS 125

Query:   242 TPSSPQ--ATSQQKRQRGSLPSMETNNRSISNSGNAMTY-SH--FKANDTKGDGRKTAVH 296
                  Q  AT        ++ +ME   ++ + +G ++ + SH   +A +TK   + T   
Sbjct:   126 FNFREQTSATDNDDDDFLNIMNME-RTKTFAGNGESIKFQSHHSLEAENTKNIWKNT--- 181

Query:   297 MSDNNKVEVERLDSS 311
               +N   E E L  S
Sbjct:   182 WRENEHEEEEELSLS 196

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041539 AT2G42660 "AT2G42660" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 46/94 (48%), Positives = 65/94 (69%)

Query:   133 RMISGVKRSVRA--PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK 190
             ++ + V++ +R+  PR+RWT  LH  FV AVQ LGG +RATPK VLE+MN+K L++AHVK
Sbjct:    37 QITNNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVK 96

Query:   191 SHLQMYRTVKSTDKGSGQGQTDMGLNQRTGVVDL 224
             SHLQMYR+ K  +  S  G       QR+ ++D+
Sbjct:    97 SHLQMYRS-KKLEPSSRPGFGAFMSGQRSYLMDM 129

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2063141 AT2G40260 "AT2G40260" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 49/103 (47%), Positives = 67/103 (65%)

Query:   108 QLPRTINHHQQYQPQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGH 167
             Q P + N +++     H  + K+N   +    RS + PR+RWT  LH  F+ AV+ LGG 
Sbjct:    48 QSPSS-NSYEEESGSHHHDQNKKNGGSVRPYNRS-KTPRLRWTPELHICFLQAVERLGGP 105

Query:   168 ERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGSG-QG 209
             +RATPK VL+LMNVK L++AHVKSHLQMYR+ K+ +   G QG
Sbjct:   106 DRATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKTDEPNEGDQG 148

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2125771 AT4G04580 "AT4G04580" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 35/68 (51%), Positives = 46/68 (67%)

Query:   138 VKRSVRA--PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 195
             V+  +R+  PRM WT  L   F+  ++ LGG E ATPK +L LM V+DLT++HVKSHLQM
Sbjct:     6 VRSYIRSDNPRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQM 65

Query:   196 YRTVKSTD 203
             YR  K  +
Sbjct:    66 YRNKKKEE 73

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	4e-20
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	3e-07
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	6e-05

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 82.5 bits (204), Expect = 4e-20
 Identities = 31/54 (57%), Positives = 35/54 (64%)

Query: 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198
           PR+ WT  LH  F+ AVQ LGG + ATPK +LELM V  LT   V SHLQ YR 
Sbjct: 2   PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198
           +  ++ WT  LH  FVHAV+ LG  E+A P  +LELM V+ LT  ++ SHLQ YR+
Sbjct: 234 KKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRS 288

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 5/52 (9%)

Query: 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197
           R  WT       + AV+  G         + + +     T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
PLN03162	526	golden-2 like transcription factor; Provisional	99.9
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.87
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.18
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	94.35
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	93.58
smart00426	68	TEA TEA domain.	90.78
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	88.55

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.90  E-value=3.6e-24  Score=210.03  Aligned_cols=63  Identities=43%  Similarity=0.678  Sum_probs=59.0

Q ss_pred             cCCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccccC
Q 018802          140 RSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTD  203 (350)
Q Consensus       140 ~s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~~~  203 (350)
                      ...||+||+||+|||++||+||++|| .++|+||+||++|+|+|||++||||||||||+++++.
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l  293 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL  293 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence            34689999999999999999999999 7999999999999999999999999999999987653

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.87  E-value=1.8e-22  Score=150.78  Aligned_cols=56  Identities=55%  Similarity=0.830  Sum_probs=54.0

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802          144 APRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV  199 (350)
Q Consensus       144 KpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~  199 (350)
                      |+|++||+|+|++||+||+.||+.+.|+||+|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            68999999999999999999997789999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.18  E-value=3.7e-06  Score=59.10  Aligned_cols=48  Identities=23%  Similarity=0.248  Sum_probs=41.4

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR  197 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR  197 (350)
                      |..||+|.+.+|++||.++|.   -.++.|.+.|+ .+-|..+|++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            578999999999999999993   15999999999 6679999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=94.35  E-value=0.16  Score=32.83  Aligned_cols=44  Identities=14%  Similarity=0.172  Sum_probs=37.3

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      .||.+-+..|+.++.++|-   ..++.|.+.|+-  =|..+|+.|.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~--rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPG--RTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCC--CCHHHHHHHHHHh
Confidence            4999999999999999992   458999999865  4999999887654

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=93.58  E-value=0.29  Score=31.93  Aligned_cols=45  Identities=11%  Similarity=0.166  Sum_probs=37.4

Q ss_pred             cccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          147 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       147 lrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      -.||++-...|+.+|.++|-   ..++.|.+.|+  +-|..+|+.+..++
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~--~rt~~~~~~~~~~~   46 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELP--GRTAEQCRERWNNL   46 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            46999999999999999991   34899999987  55999998876554

>smart00426 TEA TEA domain

Probab=90.78  E-value=0.32  Score=38.96  Aligned_cols=46  Identities=20%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             cccChHHHHHHHHHHHHhCCCCCCChH-HHHh-----------------hcCCCCCCHHHHHHHhhh
Q 018802          147 MRWTTTLHAHFVHAVQLLGGHERATPK-SVLE-----------------LMNVKDLTLAHVKSHLQM  195 (350)
Q Consensus       147 lrWT~ELH~rFVeAVeqLGG~dkAtPK-kILe-----------------lMnV~GLTr~hVKSHLQK  195 (350)
                      -+|.++|-..|++|+..+=  ...+-| ++..                 .-|. -=|+.||.||+|.
T Consensus         4 ~vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk-~Rt~KQVsShIQv   67 (68)
T smart00426        4 GVWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGK-TRTRKQVSSHIQV   67 (68)
T ss_pred             CcCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCC-ccchhhhcchhee
Confidence            3799999999999999874  222222 2221                 1221 2388999999995

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=88.55  E-value=0.37  Score=37.07  Aligned_cols=51  Identities=14%  Similarity=0.269  Sum_probs=36.2

Q ss_pred             ccChHHHHHHHHHHHHh---CCC------CCCChHHHHhhcCC---CCCCHHHHHHHhhhhhc
Q 018802          148 RWTTTLHAHFVHAVQLL---GGH------ERATPKSVLELMNV---KDLTLAHVKSHLQMYRT  198 (350)
Q Consensus       148 rWT~ELH~rFVeAVeqL---GG~------dkAtPKkILelMnV---~GLTr~hVKSHLQKYRl  198 (350)
                      +||++..+-||+.+-+.   |.-      .+...+.|.+.++-   ..+|..||++|++..|.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            59999999999988333   322      23445667777665   34899999999985443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		5e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197
           + PR+ WT  LH  F+ AV  LG  ERA PK +L+LMNV  LT  +V SHLQ +R
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFR 57
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	8e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 81.1 bits (200), Expect = 8e-20
 Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198
           + + PR+ WT  LH  F+ AV  LG  ERA PK +L+LMNV  LT  +V SHLQ +R 
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 68/417 (16%), Positives = 115/417 (27%), Gaps = 133/417 (31%)

Query: 14  LSPMPDLSLQISPPSASDCEANNNKEVRFDGL----------------------VRNSY- 50
           L  +  L  QI P   S  + ++N ++R   +                      V+N+  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 51  --AFYSDGGS----TTDSASSGSDLSHENRFYNPAE-RSYNLGPSE--PMLSLGFEMADL 101
             AF  +       TT        LS     +   +  S  L P E   +L    +    
Sbjct: 259 WNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--- 313

Query: 102 CPPPPQQLPRTINHHQQYQPQIHGHEFKRNARMISGVKRSVRAPRMRWTTTLHAHFVHAV 161
               PQ LPR          ++       N R +S +  S+R     W    H   V+  
Sbjct: 314 ---RPQDLPR----------EVL----TTNPRRLSIIAESIRDGLATWDNWKH---VNCD 353

Query: 162 QLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT-------VKSTDK------GSGQ 208
           +L          +++E  ++  L  A  +   +M+                         
Sbjct: 354 KL---------TTIIE-SSLNVLEPAEYR---KMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 209 GQTDMGLNQRTGVVDLEGGLSCAKSDTNS---SLHPTPSSPQATSQQKRQRGSLPSMETN 265
               M       VV+     S  +        S+          S     +  L +    
Sbjct: 401 KSDVM------VVVNKLHKYSLVEKQPKESTISIP---------SIYLELKVKLENEYAL 445

Query: 266 NRSISNSGNAM-TYSHFKANDTKGDG---RKTAVHMSDNNKVE--------------VE- 306
           +RSI +  N   T+          D         H+ +    E              +E 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 307 --RLDSSSLTASD---DKLLNLEF-----TLGRPSWQM---DYADQSSNHELNLLHC 350
             R DS++  AS    + L  L+F         P ++       D     E NL+  
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.96
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	97.23
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	97.09
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	96.99
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	96.41
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.32
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	96.25
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	96.25
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	95.88
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	95.15
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	94.76
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	94.6
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	94.43
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	94.41
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	94.35
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	94.08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	93.54
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	93.12
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	93.02
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	92.85
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	92.01
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	91.03
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	91.06
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	90.84
2cjj_A	93	Radialis; plant development, DNA-binding protein,	90.73
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	90.29
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	89.19
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	88.61
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	88.6
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	87.83
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	86.36
2crg_A	70	Metastasis associated protein MTA3; transcription	86.04
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	85.76
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	85.43
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	85.3
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	84.03
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	84.02
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	83.95
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	83.14
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	82.49
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	82.12
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	80.5

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.96  E-value=2e-29  Score=192.41  Aligned_cols=61  Identities=48%  Similarity=0.762  Sum_probs=57.8

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhccccc
Q 018802          141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKST  202 (350)
Q Consensus       141 s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~~  202 (350)
                      +.+|+|++||+|||++||+||++|| .++|+||+||++|+|+|||++||||||||||++.++
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999 799999999999999999999999999999998654

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.23  E-value=0.0006  Score=50.87  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=45.5

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCCC---CChHHHHhhcCCCCCCHHHHHHHhhhhhcccc
Q 018802          144 APRMRWTTTLHAHFVHAVQLLGGHER---ATPKSVLELMNVKDLTLAHVKSHLQMYRTVKS  201 (350)
Q Consensus       144 KpRlrWT~ELH~rFVeAVeqLGG~dk---AtPKkILelMnV~GLTr~hVKSHLQKYRl~k~  201 (350)
                      ..+-.||+|.+++|+++|+.+|. +.   -.++.|.+.|+  |=|..||+.|.|+|.....
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~~--~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADELG--NRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHHS--SSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence            34568999999999999999992 22   45999999985  5599999999999987653

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=97.09  E-value=0.00097  Score=51.58  Aligned_cols=50  Identities=14%  Similarity=0.123  Sum_probs=43.1

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT  198 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl  198 (350)
                      ...+-.||+|.+++|++||+.+|    -.+++|.++|+-  =|..||+.|-++|-+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~--RT~~qcr~r~~~~~i   64 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYK----DDWNKVSEHVGS--RTQDECILHFLRLPI   64 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSS--CCHHHHHHHHTTSCC
T ss_pred             cccCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCC--CCHHHHHHHHHHhcc
Confidence            34567899999999999999999    359999999875  599999999998843

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=96.99  E-value=0.0015  Score=48.70  Aligned_cols=53  Identities=21%  Similarity=0.281  Sum_probs=45.1

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccc
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKS  201 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~  201 (350)
                      ...+-.||+|.++.|+++|+++|-    .++.|.+.|.  |=|..+|+.|.++|...+.
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~--~Rt~~q~k~r~~~~l~~~~   58 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIG--SRTVLQVKSYARQYFKNKV   58 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS--SSCHHHHHHHHHHHHHHHS
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC--CCCHHHHHHHHHHHHHHHH
Confidence            345678999999999999999992    7999999874  5699999999999976553

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=96.41  E-value=0.008  Score=43.42  Aligned_cols=51  Identities=20%  Similarity=0.174  Sum_probs=43.0

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT  198 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl  198 (350)
                      ...|-.||+|..+++++||+++|-   ..++.|.+.|+  +=|..|++.|-++|-.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~--~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMC--TKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHT--TSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhC--CCCHHHHHHHHHHHcc
Confidence            345668999999999999999991   25999999995  5699999999988864

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.32  E-value=0.0044  Score=62.06  Aligned_cols=52  Identities=23%  Similarity=0.350  Sum_probs=46.6

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccc
Q 018802          144 APRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKS  201 (350)
Q Consensus       144 KpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~  201 (350)
                      +..-+||+|.|..|++||.++|.    -++.|-++++..  |..||++|-++||....
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~  429 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNYRRRFN  429 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence            45689999999999999999993    599999999887  99999999999998654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=96.25  E-value=0.0068  Score=56.24  Aligned_cols=54  Identities=20%  Similarity=0.333  Sum_probs=46.1

Q ss_pred             CCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccc
Q 018802          142 VRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKS  201 (350)
Q Consensus       142 ~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~  201 (350)
                      ..+..-+||+|.+..|++|+..+|.    .+..|-++++-  =|..+|+.|.++||....
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~VgT--KT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCC--CCHHHHHHHHHHHHHHhh
Confidence            3466789999999999999999992    39999999665  499999999999996543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=96.25  E-value=0.01  Score=45.34  Aligned_cols=53  Identities=8%  Similarity=0.136  Sum_probs=43.3

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhccc
Q 018802          145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK  200 (350)
Q Consensus       145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k  200 (350)
                      .+-.||.|-+++|++|+..+++-..-.+.+|.+.||   =|..+|+.|-+++....
T Consensus         7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg---Rt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A            7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG---RSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT---SCHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC---CCHHHHHHHHHHHHHhc
Confidence            344799999999999999998533455889999984   69999999988876543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=95.88  E-value=0.023  Score=40.89  Aligned_cols=49  Identities=12%  Similarity=0.148  Sum_probs=41.2

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT  198 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl  198 (350)
                      +-.||+|..+++++||+++|-   ..++.|.+.|+. +=|..|++.|-++|.+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~-~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGL---GNWADIADYVGN-ARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence            446999999999999999992   359999999972 3499999999988864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=95.15  E-value=0.068  Score=39.28  Aligned_cols=55  Identities=13%  Similarity=0.147  Sum_probs=45.7

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802          141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT  198 (350)
Q Consensus       141 s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl  198 (350)
                      ..++.|-.||+|.-+..+++|+++|.   -.++.|.+.|...|=|-.+++-+-..|-.
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence            35778899999999999999999992   25999999997557799999987666643

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=94.76  E-value=0.087  Score=37.53  Aligned_cols=50  Identities=12%  Similarity=0.119  Sum_probs=41.9

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR  197 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR  197 (350)
                      ...|-.||+|..++++++|+++|-   -.++.|.+.|.  |=|..+++-|-++|-
T Consensus         5 ~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~l   54 (60)
T 2d9a_A            5 SSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFP--NRTDQQCQYRWLRVL   54 (60)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCS--SSCHHHHHHHHHHTS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcc--CCCHHHHHHHHHHHc
Confidence            456778999999999999999992   35999999974  569999998877764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=94.60  E-value=0.079  Score=36.68  Aligned_cols=47  Identities=17%  Similarity=0.198  Sum_probs=39.9

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR  197 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR  197 (350)
                      +-.||+|..++++++|+++|.   ..++.|.+.|.  |=|..+++-|-++|-
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~L   49 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLP--NRTDVQCQHRWQKVL   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTST--TCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcC--CCCHHHHHHHHHHHc
Confidence            568999999999999999993   36999999974  569999998877663

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.43  E-value=0.11  Score=37.82  Aligned_cols=48  Identities=13%  Similarity=0.295  Sum_probs=41.2

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802          145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV  199 (350)
Q Consensus       145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~  199 (350)
                      .+-.||+|..++++++|+++|.    .+..|.+++|   =|-.+|+-|-+.|-..
T Consensus         8 ~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~g---Rt~~qcr~Rw~~~l~~   55 (66)
T 2din_A            8 KKTEWSREEEEKLLHLAKLMPT----QWRTIAPIIG---RTAAQCLEHYEFLLDK   55 (66)
T ss_dssp             SCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHHS---SCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC----CHHHHhcccC---cCHHHHHHHHHHHhCh
Confidence            4567999999999999999982    6999999765   5999999999988653

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=94.41  E-value=0.097  Score=36.32  Aligned_cols=47  Identities=11%  Similarity=0.115  Sum_probs=39.6

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR  197 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR  197 (350)
                      +-.||+|..++++++|+++|.   ..+..|.+.|.  |=|..+++-|-++|-
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLK--GRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTST--TCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcC--CCCHHHHHHHHHHHc
Confidence            457999999999999999992   35899999984  569999998877763

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=94.35  E-value=0.11  Score=38.49  Aligned_cols=48  Identities=15%  Similarity=0.160  Sum_probs=39.1

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHh
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHL  193 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHL  193 (350)
                      .+.|-.||+|.-++++++|+++|-   -.++.|.+.+.+.|=|-.|++-.-
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw   55 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW   55 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence            345678999999999999999992   249999999888788999987543

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.08  E-value=0.12  Score=37.54  Aligned_cols=45  Identities=9%  Similarity=-0.026  Sum_probs=37.2

Q ss_pred             CCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHH
Q 018802          142 VRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSH  192 (350)
Q Consensus       142 ~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSH  192 (350)
                      .++..-.||+|.|+.|++|+.++|.    ...+|.++|.  +-|..+|.-|
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~--~rt~~~~v~~   52 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLE--RKSVPDCVLY   52 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCT--TSCHHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHH
Confidence            4567789999999999999999982    4899988764  6698888755

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=93.54  E-value=0.23  Score=34.70  Aligned_cols=48  Identities=15%  Similarity=0.176  Sum_probs=39.7

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      |-.||+|..+..+++|+.+|.   ..++.|.+.|+..|=|-.+++-+-..|
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~   49 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM   49 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            568999999999999999992   259999999975567899998765544

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=93.12  E-value=0.12  Score=39.54  Aligned_cols=52  Identities=8%  Similarity=0.066  Sum_probs=40.9

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802          145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT  198 (350)
Q Consensus       145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl  198 (350)
                      .+-.||.|....|++||..+|....-.+.+|.++|  +|=|..+|+.|-+.+..
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence            44569999999999999999831123477787777  47799999999887754

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=93.02  E-value=0.11  Score=41.47  Aligned_cols=56  Identities=25%  Similarity=0.329  Sum_probs=38.2

Q ss_pred             CCccccChHHHHHHHHHHHHhCCCCCCChHHHHh------------------hcCCCCCCHHHHHHHhhhhhccccc
Q 018802          144 APRMRWTTTLHAHFVHAVQLLGGHERATPKSVLE------------------LMNVKDLTLAHVKSHLQMYRTVKST  202 (350)
Q Consensus       144 KpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILe------------------lMnV~GLTr~hVKSHLQKYRl~k~~  202 (350)
                      +..-+|.++|-+.|++|+..+==....  |.||.                  .-| .-=|+.||.||||.-|..+.+
T Consensus         4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~   77 (82)
T 2hzd_A            4 DAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSR   77 (82)
T ss_dssp             GGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTT
T ss_pred             CcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhh
Confidence            456789999999999999987411112  22231                  111 234899999999998876654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.85  E-value=0.33  Score=35.58  Aligned_cols=50  Identities=14%  Similarity=0.129  Sum_probs=42.2

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR  197 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR  197 (350)
                      ...|-.||+|..++++++|+++|-   ..++.|.+.|+  +=|..+++-|-+.|-
T Consensus         6 ~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~L   55 (70)
T 2dim_A            6 SGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEWL   55 (70)
T ss_dssp             CSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHTS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHHc
Confidence            446778999999999999999992   35999999987  569999998877764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.01  E-value=0.44  Score=35.03  Aligned_cols=54  Identities=17%  Similarity=0.204  Sum_probs=38.5

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHh-hcCCCCCCHHHHHHHhhhhhcccccCCC
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLE-LMNVKDLTLAHVKSHLQMYRTVKSTDKG  205 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILe-lMnV~GLTr~hVKSHLQKYRl~k~~~~~  205 (350)
                      +..+-.||+|.|..|.+|+.+.|-    -...|.+ ++  +.-|..+|.   |-|-..++++.+
T Consensus         6 ~~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v--~~Kt~~~~v---~fYY~wKkt~~~   60 (63)
T 2yqk_A            6 SGIEKCWTEDEVKRFVKGLRQYGK----NFFRIRKELL--PNKETGELI---TFYYYWKKTSGP   60 (63)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHSC--TTSCHHHHH---HHHHHHHCSSCC
T ss_pred             CcCCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHHc--CCCcHHHHH---HHHhcccCCCCC
Confidence            345678999999999999999992    3678876 44  445888875   445555555443

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=91.03  E-value=0.032  Score=43.51  Aligned_cols=53  Identities=13%  Similarity=0.149  Sum_probs=43.2

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccccC
Q 018802          145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTD  203 (350)
Q Consensus       145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~~~  203 (350)
                      .+-.||+|.++.|+++|+.+|-    .+..|.+.|  +|=|..+|+.|.+.|......+
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l--~gRt~~q~k~r~~~~lrk~~l~   67 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEHGR----NWSAIARMV--GSKTVSQCKNFYFNYKKRQNLD   67 (89)
Confidence            4567999999999999999992    489999886  4669999999988876654433

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=91.06  E-value=0.56  Score=35.95  Aligned_cols=45  Identities=11%  Similarity=0.031  Sum_probs=38.3

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhh
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ  194 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQ  194 (350)
                      ...+-.||+|.-+.++++|+++|    ..++.|.+.|   |=|-.+||.+..
T Consensus        20 ~i~k~~wT~EED~~L~~l~~~~G----~kW~~IA~~l---gRt~~q~knRw~   64 (73)
T 2llk_A           20 RNHVGKYTPEEIEKLKELRIKHG----NDWATIGAAL---GRSASSVKDRCR   64 (73)
T ss_dssp             CCCCCSSCHHHHHHHHHHHHHHS----SCHHHHHHHH---TSCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHC----CCHHHHHHHh---CCCHHHHHHHHH
Confidence            33566899999999999999999    2399999999   669999998754

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=90.84  E-value=0.66  Score=35.96  Aligned_cols=49  Identities=10%  Similarity=0.058  Sum_probs=37.7

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802          148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT  198 (350)
Q Consensus       148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl  198 (350)
                      .||.+-..+|.+|+..++-..--.+.+|.+.++  |=|.++|+.|-+....
T Consensus        10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~--gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A           10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG--SRSPEECQRKYMENPR   58 (73)
T ss_dssp             CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT--TSCHHHHHHHHHHSSS
T ss_pred             CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC--CCCHHHHHHHHHHHHh
Confidence            599999999999999997322234677887765  5699999988766543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=90.73  E-value=0.4  Score=38.26  Aligned_cols=52  Identities=15%  Similarity=0.189  Sum_probs=42.0

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV  199 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~  199 (350)
                      .-.||.|....|++|+..+|-...-.+.+|.+.|.  |=|..+|+.|-+++...
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp--GRT~~q~k~ry~~l~~d   59 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYEILVED   59 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence            34699999999999999998322245889999884  67999999999887643

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=90.29  E-value=0.89  Score=37.15  Aligned_cols=54  Identities=20%  Similarity=0.206  Sum_probs=43.4

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHhhhhhccc
Q 018802          141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMN--VKDLTLAHVKSHLQMYRTVK  200 (350)
Q Consensus       141 s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMn--V~GLTr~hVKSHLQKYRl~k  200 (350)
                      ..++.|-.||+|.-+..+++|+.+|.   -.++.|++.+.  .++=|..++|-+   ||...
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdr---Wrnll   63 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDK---WKTLV   63 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHH---HHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHH---HHHHH
Confidence            45789999999999999999999993   25999999763  378899999964   55444

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=89.19  E-value=0.78  Score=35.43  Aligned_cols=46  Identities=13%  Similarity=0.137  Sum_probs=39.0

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      +-.||+|..++++++|+.+|.   ..++.|.+.|  +|=|..+++.|-++|
T Consensus         4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~   49 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH   49 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence            457999999999999999994   3489999998  466999999877666

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=88.61  E-value=1  Score=34.73  Aligned_cols=46  Identities=20%  Similarity=0.245  Sum_probs=38.9

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      .+-.||+|..+.++++|.++|.    .+..|.+.|  +|=|..+|+.|-..+
T Consensus        55 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~~  100 (105)
T 1gv2_A           55 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNST  100 (105)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            3568999999999999999993    589999876  677999999986644

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=88.60  E-value=0.83  Score=35.76  Aligned_cols=49  Identities=8%  Similarity=0.121  Sum_probs=41.2

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802          145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV  199 (350)
Q Consensus       145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~  199 (350)
                      .+-.||+|....++++|.++|.    .+..|.+.|  +|=|..+|+.|-..+...
T Consensus        52 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           52 RTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence            3568999999999999999993    599999987  577999999987766543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=87.83  E-value=1.1  Score=36.09  Aligned_cols=49  Identities=14%  Similarity=0.165  Sum_probs=41.0

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR  197 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR  197 (350)
                      ...|..||+|.-++++++|+++|.    .++.|.+.|.  |=|..+++.+-+.|-
T Consensus         8 ~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~--~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A            8 AAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFP--NRNARQCRDRWKNYL   56 (126)
T ss_dssp             BCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCT--TCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHhhhc
Confidence            456778999999999999999993    6999999885  458899988777664

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=86.36  E-value=0.34  Score=38.18  Aligned_cols=48  Identities=19%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhh
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM  195 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQK  195 (350)
                      --.||.+-...|..|+..+..-..-.+.+|.+.++  |-|.++|+.|-|-
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp--GKT~eEVk~hY~~   67 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK--GRTPEEVKKHYEL   67 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC--SSCHHHHHGGGC-
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC--CCCHHHHHHHHHH
Confidence            34699999999999999997433345677777664  7799999999763

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=86.04  E-value=1.8  Score=32.45  Aligned_cols=55  Identities=15%  Similarity=0.162  Sum_probs=39.2

Q ss_pred             CCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccccCC
Q 018802          142 VRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDK  204 (350)
Q Consensus       142 ~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~~~~  204 (350)
                      .++..-.||+|.|..|.+|+...|-    -...|.+.| |+.-|..+|..+-   -..++++.
T Consensus         4 ~r~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~-v~~Kt~~~~v~fY---Y~wKkt~~   58 (70)
T 2crg_A            4 GSSGMEEWSASEACLFEEALEKYGK----DFNDIRQDF-LPWKSLTSIIEYY---YMWKTTDR   58 (70)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTT-CSSSCHHHHHHHH---HHHHTCCS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHH-cCCCCHHHHHHHH---HhhcCCch
Confidence            4567779999999999999999992    267787621 4555888877554   34555544

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=85.76  E-value=1.6  Score=34.10  Aligned_cols=45  Identities=13%  Similarity=0.159  Sum_probs=37.3

Q ss_pred             cccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          147 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       147 lrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      ..||+|..++++++|+.+|.   ..++.|.+.|+  |=|..+++-+-..|
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~   46 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI--TRNPRQCRERWNNY   46 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC--CCCHHHHHHHHHHH
Confidence            57999999999999999993   35999999986  55888888765554

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=85.43  E-value=2  Score=35.98  Aligned_cols=54  Identities=26%  Similarity=0.242  Sum_probs=43.2

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhc--CCCCCCHHHHHHHhhhhhccc
Q 018802          141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM--NVKDLTLAHVKSHLQMYRTVK  200 (350)
Q Consensus       141 s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelM--nV~GLTr~hVKSHLQKYRl~k  200 (350)
                      ..++.|-.||+|.-+..+++|+++|.   -.++.|++.+  ..++=|..++|-   |||...
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKd---RWrnll   81 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKD---KWKTLV   81 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHH---HHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHH---HHHHHH
Confidence            45788999999999999999999992   2599999975  347789999995   455443

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=85.30  E-value=1.8  Score=34.65  Aligned_cols=46  Identities=22%  Similarity=0.242  Sum_probs=38.9

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      .+-.||+|..+.++++|.++|    ..+..|.+.|  +|=|..+|+.|-..+
T Consensus        78 ~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia~~l--~gRt~~~~k~r~~~~  123 (128)
T 1h8a_C           78 KKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLL--PGRTDNAVKNHWNST  123 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHC----SCHHHHGGGS--TTCCHHHHHHHHHTT
T ss_pred             ccccCCHHHHHHHHHHHHHHC----cCHHHHHHHC--CCCCHHHHHHHHHHH
Confidence            356799999999999999999    3599999986  577999999886544

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=84.03  E-value=2.2  Score=34.27  Aligned_cols=48  Identities=19%  Similarity=0.228  Sum_probs=40.1

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV  199 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~  199 (350)
                      +-.||+|..++++++|.++|.    .+..|.+.|  +|=|..+|+.|-..+...
T Consensus        62 ~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           62 HTPWTAEEDALLVQKIQEYGR----QWAIIAKFF--PGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHh
Confidence            457999999999999999993    599999976  577999999987666543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=84.02  E-value=2.4  Score=33.87  Aligned_cols=48  Identities=10%  Similarity=0.105  Sum_probs=39.7

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802          145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR  197 (350)
Q Consensus       145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR  197 (350)
                      .+-.||+|..++++++|+.+|.   -.++.|.+.|+  |=|..+++-|-++|-
T Consensus        26 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           26 NKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLK--GRIGKQCRERWHNHL   73 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSS--SCCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhc--CCcHHHHHHHHHHhc
Confidence            4567999999999999999993   24999999985  669999998776654

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=83.95  E-value=3.4  Score=31.42  Aligned_cols=53  Identities=19%  Similarity=0.171  Sum_probs=41.2

Q ss_pred             CCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC-CCCCCHHHHHHHhhhhhcccc
Q 018802          142 VRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMN-VKDLTLAHVKSHLQMYRTVKS  201 (350)
Q Consensus       142 ~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMn-V~GLTr~hVKSHLQKYRl~k~  201 (350)
                      ..+.|-.||+|.-...++.|+++|    ..++.|+.--. .++=|.-.||.   |||...+
T Consensus         4 ~~~~r~~WT~EE~~~L~~gV~k~G----~~W~~I~~~y~f~~~RT~VdLKd---k~r~L~k   57 (62)
T 1x58_A            4 GSSGRKDFTKEEVNYLFHGVKTMG----NHWNSILWSFPFQKGRRAVDLAH---KYHRLIS   57 (62)
T ss_dssp             CCCCSSSCCHHHHHHHHHHHHHHC----SCHHHHHHHSCCCTTCCHHHHHH---HHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHh----HhHHHHHHhCCCccCcccchHHH---HHHHHHh
Confidence            345788999999999999999999    26999996322 35668888885   7776543

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=83.14  E-value=2.5  Score=34.87  Aligned_cols=46  Identities=20%  Similarity=0.239  Sum_probs=39.4

Q ss_pred             CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      .+-.||+|..+.++++|.++|    ..+..|.+.|  +|=|..+|+.|-..+
T Consensus       109 ~~~~WT~eEd~~L~~~~~~~g----~~W~~Ia~~l--~gRt~~~~knr~~~~  154 (159)
T 1h89_C          109 KKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLL--PGRTDNAIKNHWNST  154 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHC----SCHHHHHTTS--TTCCHHHHHHHHHTT
T ss_pred             cccCCChHHHHHHHHHHHHHC----CCHHHHHHHC--CCCCHHHHHHHHHHH
Confidence            456899999999999999999    3599999976  677999999986654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=82.49  E-value=2.1  Score=35.86  Aligned_cols=54  Identities=20%  Similarity=0.144  Sum_probs=43.6

Q ss_pred             cCCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHhhhh
Q 018802          140 RSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMN--VKDLTLAHVKSHLQMY  196 (350)
Q Consensus       140 ~s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMn--V~GLTr~hVKSHLQKY  196 (350)
                      ...++.|-.||+|.-+..+++|+++|.   -.++.|++.+.  .+|=|-.++|-+...+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl   66 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTL   66 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence            345788999999999999999999992   25999999875  3778999998654433

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=82.12  E-value=3.8  Score=33.07  Aligned_cols=49  Identities=14%  Similarity=0.173  Sum_probs=40.5

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhccc
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK  200 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k  200 (350)
                      +-.||+|..+.++++|.++|.    .+..|.+.|.  |=|..+|+.|-..|....
T Consensus        54 ~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~--gRt~~~~k~rw~~~l~~~  102 (131)
T 3zqc_A           54 KHAWTPEEDETIFRNYLKLGS----KWSVIAKLIP--GRTDNAIKNRWNSSISKR  102 (131)
T ss_dssp             CSCCCHHHHHHHHHHHHHSCS----CHHHHTTTST--TCCHHHHHHHHHHTTGGG
T ss_pred             CCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC--CCCHHHHHHHHHHHHHHH
Confidence            347999999999999999994    4899998774  669999999877665443

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=80.50  E-value=3.4  Score=32.23  Aligned_cols=46  Identities=17%  Similarity=0.147  Sum_probs=37.0

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHhhhh
Q 018802          148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMN--VKDLTLAHVKSHLQMY  196 (350)
Q Consensus       148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMn--V~GLTr~hVKSHLQKY  196 (350)
                      .||+|..+..+++|+++|.   -.++.|++...  ++|=|-.++|-+-..+
T Consensus         2 ~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~RT~~~lKdrWrnl   49 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTL   49 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence            5999999999999999993   25999998633  4677999999754444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	7e-19

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.3 bits (190), Expect = 7e-19
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197
           + + PR+ WT  LH  F+ AV  LG  ERA PK +L+LMNV  LT  +V SHLQ +R
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFR 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	97.25
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	96.73
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	95.66
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	94.98
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	94.98
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	94.69
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	92.88
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	92.01
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	91.24
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	89.9
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	89.65
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	89.64
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	88.88

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.4e-27  Score=178.71  Aligned_cols=61  Identities=48%  Similarity=0.755  Sum_probs=57.5

Q ss_pred             CCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhccccc
Q 018802          141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKST  202 (350)
Q Consensus       141 s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~~  202 (350)
                      ..+|+|++||+|||++||+||++||+ ++|+||+|+++|+|++||++||+|||||||++..+
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999985 89999999999999999999999999999998754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00034  Score=49.31  Aligned_cols=50  Identities=22%  Similarity=0.316  Sum_probs=43.3

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccc
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKS  201 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~  201 (350)
                      .++||+|.+..|++||..+|.    .+..|-++|+  +=|..+|++|.++|.....
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~--~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLIG--SRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS--SSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHcC--CCCHHHHHHHHHHHHHHHH
Confidence            468999999999999999993    5999999986  4599999999999876543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0013  Score=44.72  Aligned_cols=45  Identities=24%  Similarity=0.265  Sum_probs=39.7

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802          148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR  197 (350)
Q Consensus       148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR  197 (350)
                      .||.|.+.+|++||+.+|   ..-++.|-+.|+-.  |..|++.|-++|.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G---~~nW~~Ia~~~~~R--t~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG---FGNWQDVANQMCTK--TKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC---TTCHHHHHHHHTTS--CHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHC---CccHHHHHHHcCCC--CHHHHHHHHHHhC
Confidence            399999999999999998   23499999999855  9999999999884

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.013  Score=41.10  Aligned_cols=51  Identities=22%  Similarity=0.376  Sum_probs=43.1

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV  199 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~  199 (350)
                      ++.+-+||++-...|+++|..+|.    -+..|-++|+  +=|..+|+.|-.+|+..
T Consensus         2 ~k~~~~WT~eE~~~f~~~~~~~G~----~w~~Ia~~~~--~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           2 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIG--NKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHS--SCCHHHHHHHHHHTTTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCc----hHHHHHHHcC--CCCHHHHHHHHHHHHhh
Confidence            455667999999999999999993    3999999985  55999999999888643

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.98  E-value=0.026  Score=38.17  Aligned_cols=46  Identities=17%  Similarity=0.219  Sum_probs=39.3

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      |.+||+|..++.+++|+++|.   ..++.|.+.|+  |=|..|++.|-++|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLP--NRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTST--TCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHC--CCCHHHHHHHHHhh
Confidence            457999999999999999993   24999999985  66999999887776

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=94.98  E-value=0.019  Score=40.29  Aligned_cols=46  Identities=17%  Similarity=0.269  Sum_probs=39.1

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhh
Q 018802          148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM  195 (350)
Q Consensus       148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQK  195 (350)
                      .||+|.+..|++||.++|.-....+++|.+.|+  |=|..+|+.|-++
T Consensus         3 ~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~--gRt~~qc~~r~~~   48 (63)
T d2cjja1           3 PWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYEI   48 (63)
T ss_dssp             SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC--CCCHHHHHHHHHH
Confidence            499999999999999999434456999999997  4599999998754

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.017  Score=41.01  Aligned_cols=47  Identities=11%  Similarity=0.070  Sum_probs=38.4

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhh
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM  195 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQK  195 (350)
                      ++..-.||+|.++.|++||.++|.    -++.|.++|  ++=|..+|+.|-..
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G~----~w~~Ia~~~--~~rt~~q~~~~yy~   60 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHPK----NFGLIASFL--ERKTVAECVLYYYL   60 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTTS----CSSSHHHHT--TTSCHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHCC----cHHHHHHHc--CCCCHHHHHHHHHH
Confidence            344556999999999999999993    378899886  56699999999643

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.071  Score=36.86  Aligned_cols=50  Identities=10%  Similarity=0.090  Sum_probs=38.8

Q ss_pred             CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhh
Q 018802          143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ  194 (350)
Q Consensus       143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQ  194 (350)
                      +..+-.||+|..+.|++||..+|....-.+++|.+.|+  |=|..+++.|-+
T Consensus         9 ~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~--~Rt~~qc~~R~~   58 (60)
T d2cqra1           9 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP--SKSKEDCIARYK   58 (60)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS--SSCHHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC--CCCHHHHHHHHH
Confidence            34555799999999999999998422234889988875  679999987754

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.21  Score=34.12  Aligned_cols=45  Identities=16%  Similarity=0.188  Sum_probs=37.4

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHh
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHL  193 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHL  193 (350)
                      |..||+|.-+.++++|+++|-   ..++.|.+.+...+=|..+++-+-
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~---~~W~~I~~~~~~~~Rt~~q~k~Rw   46 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW   46 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---ChHHHHHhhcCCCCcCHHHHHHHH
Confidence            558999999999999999991   249999998777777888887544

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.24  E-value=0.17  Score=35.08  Aligned_cols=44  Identities=14%  Similarity=0.238  Sum_probs=34.7

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      .||+|.|..|++|+.++|-    -...|.+.| |+.-|..+|..|--.+
T Consensus         3 ~WT~eE~~~F~~~~~~yGK----df~~I~~~~-v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK----DFNDIRQDF-LPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS----CHHHHHHTT-CSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc----cHHHHHHHH-cCCCCHHHHHHHHHHH
Confidence            5999999999999999992    467887643 2455999999986443

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.3  Score=34.79  Aligned_cols=52  Identities=8%  Similarity=0.174  Sum_probs=43.1

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhccccc
Q 018802          148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKST  202 (350)
Q Consensus       148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~~  202 (350)
                      .||.|-...|..|+..+.+-..-.+.+|-+.||   -|.++|..+.++.+.....
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg---kt~~ev~~~~k~l~e~~~~   54 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG---RSVTDVTTKAKQLKDSVTC   54 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT---SCHHHHHHHHHHHHHSCCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC---CCHHHHHHHHHHHHHhccc
Confidence            699999999999999996333456899999995   5999999999888875543

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.65  E-value=0.34  Score=32.37  Aligned_cols=43  Identities=21%  Similarity=0.244  Sum_probs=36.9

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      -||+|.-+.++++|+++|    ..+..|...|  +|=|..+|+.|-..+
T Consensus         3 ~WT~eED~~L~~~v~~~G----~~W~~Ia~~~--~gRt~~~~knr~~~~   45 (47)
T d1gv2a2           3 SWTEEEDRIIYQAHKRLG----NRWAEIAKLL--PGRTDNAIKNHWNST   45 (47)
T ss_dssp             CCCHHHHHHHHHHHHHHS----SCHHHHHTTC--TTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHh----hHHHHHHhHc--CCCCHHHHHHHHHHH
Confidence            599999999999999999    2589999876  577999999886544

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.64  E-value=0.37  Score=32.62  Aligned_cols=46  Identities=11%  Similarity=0.133  Sum_probs=39.1

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      |..||+|.-++-+++|+++|-   ..++.|-+.|+  +=|..|++.+-++|
T Consensus         3 rg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~--~Rt~~qc~~Rw~~~   48 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLK--GRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTST--TCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHC--CCCHHHHHHHHHhh
Confidence            557999999999999999982   24999999985  56999999887766

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.88  E-value=0.58  Score=31.55  Aligned_cols=48  Identities=15%  Similarity=0.176  Sum_probs=37.9

Q ss_pred             ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802          146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY  196 (350)
Q Consensus       146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY  196 (350)
                      |-.||+|.-+..+++|+++|-   -.++.|.+.....+=|..+++-.-..|
T Consensus         2 r~~WT~eED~~L~~~v~~~G~---~~W~~I~~~~~~~~Rt~~q~r~Rw~nl   49 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            457999999999999999992   258999987766677888887654433