Citrus Sinensis ID: 018905
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L3X9 | 461 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.965 | 0.731 | 0.732 | 1e-139 | |
| P56902 | 421 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.851 | 0.705 | 0.535 | 1e-84 | |
| O94297 | 426 | Putative 3-oxoacyl-[acyl- | yes | no | 0.848 | 0.694 | 0.479 | 4e-81 | |
| Q9NWU1 | 459 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.882 | 0.671 | 0.48 | 8e-78 | |
| Q9D404 | 459 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.842 | 0.640 | 0.477 | 1e-76 | |
| Q0VCA7 | 460 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.842 | 0.639 | 0.470 | 1e-75 | |
| Q9KQH9 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.825 | 0.695 | 0.458 | 2e-70 | |
| P55338 | 415 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.822 | 0.691 | 0.456 | 2e-69 | |
| O34340 | 413 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.822 | 0.694 | 0.451 | 3e-67 | |
| Q8NXE1 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.833 | 0.702 | 0.433 | 1e-64 |
| >sp|Q8L3X9|KASM_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana GN=KAS PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/348 (73%), Positives = 293/348 (84%), Gaps = 11/348 (3%)
Query: 1 MSNSSWRRLFFTRRFDLSRYFSSSSRAEVFDPPPLSPLRRVVVTGIGMVTPLGCGAETTW 60
M+ S+ RR R L+R+ S+SS RRVVVTG+GMVTPLG G ETTW
Sbjct: 1 MATSNLRRHLSASRLRLNRFISTSSSYHSH--------RRVVVTGLGMVTPLGRGVETTW 52
Query: 61 RRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNS 120
RRLI GECGIR +T +DLKM +FD ET+L+ F QL+SKVAA VP G + GEF+E WLNS
Sbjct: 53 RRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWLNS 112
Query: 121 KDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICE 180
K ++A FI YA+CAADEAL DA+WLP+++ +KERTGVSIGGGIGSI D V+AAQ+ICE
Sbjct: 113 K---AVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICE 169
Query: 181 KRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSD 240
KRLRRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA RMIQFGD+D
Sbjct: 170 KRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDAD 229
Query: 241 VMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEE 300
VMVAGGTESSIDALS+AGF +SRAL+TK+N +PQEASRPFDC RDGFVIGEGSGV+VLEE
Sbjct: 230 VMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEE 289
Query: 301 LEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
EHAK+RGAKIYAE+ GYGMSGDAHHITQP DGKGA+LAMTRAL+Q+
Sbjct: 290 YEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQS 337
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Catalyzes all the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Able to elongate saturated acyl chains from 4 to at least 16 carbons. Uses malonyl-CoA but not acetyl-CoA as primer substrate. When expressed in a heterologous system, reveals a bimodal distribution of products, with peaks at C8 and C14-C16. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 1 |
| >sp|P56902|FABF_RHIME 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Rhizobium meliloti (strain 1021) GN=fabF PE=3 SV=2 | Back alignment and function description |
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Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/312 (53%), Positives = 217/312 (69%), Gaps = 15/312 (4%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RRVV+TG GMV+PLGCG E +W RL+ G+ R++T F+ E L +
Sbjct: 1 MRRVVITGTGMVSPLGCGTEVSWARLLTGDNAARKVT-------EFEVE-------DLPA 46
Query: 98 KVAAVVPCGI-SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKER 156
K+A +P G S G FN D W+ K+ R + FI YA+ AAD AL DA W P +
Sbjct: 47 KIACRIPFGDGSDGTFNADDWMEPKEQRKVDPFIVYAMAAADMALADAGWKPESDEDQIS 106
Query: 157 TGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
TGV IG GIG + VDA + +K RR+SPFFIP LIN+A+G VS+++ +GPNH+
Sbjct: 107 TGVLIGSGIGGLEGIVDAGYTLRDKGPRRISPFFIPGRLINLAAGQVSIRHKLRGPNHSV 166
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
VTAC+TGAH+IGDA+R+I GD+DVMVAGGTES I +S+AGF +AL+T++N P++A
Sbjct: 167 VTACSTGAHAIGDASRLIALGDADVMVAGGTESPICRISLAGFAACKALSTQHNDNPEKA 226
Query: 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 336
SRP+D RDGFV+GEG+G++VLEELEHA+ RGAKIYAEV GYG+SGDA HIT P DG+G
Sbjct: 227 SRPYDADRDGFVMGEGAGIVVLEELEHARARGAKIYAEVIGYGLSGDAFHITAPSEDGEG 286
Query: 337 AILAMTRALKQA 348
A M ALK+A
Sbjct: 287 AYRCMQMALKRA 298
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|O94297|OXSM_SCHPO Putative 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC887.13c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 207/313 (66%), Gaps = 17/313 (5%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREIT--PEDLKMGNFDRETQLHAFGQL 95
++RVV+TG+G VTPLG G +T WR LI G+ GI + PE + Q+
Sbjct: 1 MKRVVITGLGAVTPLGNGVKTNWRNLIQGKSGIVSLKGFPE---------------YEQI 45
Query: 96 TSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKE 155
SKVA V+P G E+N +++ R +A F AL +A EAL DA+W+ D+ +K
Sbjct: 46 PSKVAGVIPRGKEKEEWNVLDYVDQGKLREVATFTQLALTSAAEALKDARWIDIDEQEKL 105
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
TGV G GIG++ D ++ ++ + +R++SP I +ILINM +G++S +YGF NH
Sbjct: 106 ATGVCFGTGIGNLDDALNENGVLNKAGIRKVSPRVISKILINMPAGYISQRYGFTALNHT 165
Query: 216 AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
TACA G H+IGDA I+ G +DV++AGG+ES I+ L++AGF K+R+L+TK+N P+
Sbjct: 166 TTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFNDNPKA 225
Query: 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGK 335
ASRPFD RDGFVIGEGS LVLEELEHAK R A IYAE+ GYG++ D++HIT P+ +G
Sbjct: 226 ASRPFDANRDGFVIGEGSAALVLEELEHAKNRNAHIYAEIVGYGLASDSYHITAPNPNGD 285
Query: 336 GAILAMTRALKQA 348
A AM R+LKQA
Sbjct: 286 AAYYAMKRSLKQA 298
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May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9NWU1|OXSM_HUMAN 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Homo sapiens GN=OXSM PE=1 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 156/325 (48%), Positives = 209/325 (64%), Gaps = 17/325 (5%)
Query: 25 SRAEVFDPPPLSPL-RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNF 83
S+ + F P+S L RRVV+TGIG+VTPLG G W RLI GE GI + E+ K
Sbjct: 27 SKRKFFGTVPISRLHRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYK---- 82
Query: 84 DRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHD 143
+ VAA VP G G+FNE ++++ D +S++ A+ AA+ A+ D
Sbjct: 83 ----------SIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKD 132
Query: 144 AKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHV 203
+ W P + + TGV+IG G+ + + A K ++SPFF+P+IL+NMA+G V
Sbjct: 133 SGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQV 192
Query: 204 SMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSR 263
S++Y +GPNHA TAC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++R
Sbjct: 193 SIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRAR 252
Query: 264 ALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGD 323
AL+T N P+ A RPF RDGFV+GEG+ VLVLEE EHA +R A+IYAEV GYG+SGD
Sbjct: 253 ALST--NSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGD 310
Query: 324 AHHITQPHIDGKGAILAMTRALKQA 348
A HIT P +G+GA+ M ALK A
Sbjct: 311 AGHITAPDPEGEGALRCMAAALKDA 335
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May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9D404|OXSM_MOUSE 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Mus musculus GN=Oxsm PE=2 SV=1 | Back alignment and function description |
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Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 205/310 (66%), Gaps = 16/310 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TGIG+VTPLG G + W RL+ GE GI + ++ K +
Sbjct: 42 RRVVITGIGLVTPLGVGTQLVWDRLLRGESGIVSVVGDEYK--------------NIPCS 87
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA VP G G+FNE+++++ D +S++ A+ AA+ AL D+ W P + + TG
Sbjct: 88 VAAYVPRGPHEGQFNEENFVSKSDAKSMSSSTIMAVGAAELALKDSGWHPKREADQVATG 147
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG G+ + + A + K ++SPFF+P+ILINMA+G VS++Y +GPNH+ T
Sbjct: 148 VAIGMGMVPLEVISETALLFQTKGYNKVSPFFVPKILINMAAGQVSIRYKLKGPNHSVST 207
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL++ N P+ A R
Sbjct: 208 ACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSS--NPDPKLACR 265
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PF RDGFV+GEG+ VLVLEE EHA +RGA+IYAE+ GYG+SGDA HIT P +G+GA+
Sbjct: 266 PFHPERDGFVMGEGAAVLVLEEHEHAVQRGARIYAEILGYGLSGDAGHITAPDPEGEGAL 325
Query: 339 LAMTRALKQA 348
M A+K A
Sbjct: 326 RCMAAAVKDA 335
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May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q0VCA7|OXSM_BOVIN 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Bos taurus GN=OXSM PE=2 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (724), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/310 (47%), Positives = 199/310 (64%), Gaps = 16/310 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TGIG+VTPLG G + W RL+ GE GI + ++ + +
Sbjct: 43 RRVVITGIGLVTPLGVGTQLVWDRLVRGESGIVSLVGDE--------------YQSIPCS 88
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA VP G G+FNE +++ D +S++ A+ AA+ AL DA W P + + TG
Sbjct: 89 VAAYVPRGCDEGQFNEQNFVPKSDTKSMSPPTVMAIAAAELALKDAGWHPQSEADQAATG 148
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG G+ + + A K ++SPFF+P+IL+NMASG VS+++ +GPNHA T
Sbjct: 149 VAIGMGMVPLEVISETALTFQTKGYSKVSPFFVPKILVNMASGQVSIRHKLKGPNHAVST 208
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TGAH++GD+ R + GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A R
Sbjct: 209 ACTTGAHAVGDSFRFVAHGDADVMVAGGTDSCISPLSLAGFARARALST--NTDPKSACR 266
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PF RDGFV+GEG+ VLVLEE HA +RGA++YAE+ GYG+SGDA HIT P G+GA
Sbjct: 267 PFHPQRDGFVMGEGAAVLVLEEHRHALRRGARVYAEIVGYGLSGDAGHITAPDPGGEGAF 326
Query: 339 LAMTRALKQA 348
M A+K A
Sbjct: 327 RCMAAAVKDA 336
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May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9KQH9|FABF_VIBCH 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=fabF PE=3 SV=3 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 199/310 (64%), Gaps = 22/310 (7%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GM++P+G E++W+ L+ G+ GI I E NF +++
Sbjct: 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNI--EHFDTTNF------------STR 49
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
A +V F+ + +++ KD R + FI Y + A +AL D+ L ++ R G
Sbjct: 50 FAGLVKG------FDCEQYMSKKDARKMDLFIQYGIAAGIQALEDS-GLEVNEENAARIG 102
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG GIG + Q + EK R++SPFF+P ++NM +G++S+ G +GPN A T
Sbjct: 103 VAIGSGIGGLELIETGHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAIST 162
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TG H+IG AARMI +GD+D MVAGG E + L MAGF ++AL+T+ N PQ+ASR
Sbjct: 163 ACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKASR 221
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
P+D RDGFV+G+G+G++VLEE EHAK RGAKIYAEV G+GMSGDA+H+T P DG G
Sbjct: 222 PWDKDRDGFVLGDGAGIMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDGSGGA 281
Query: 339 LAMTRALKQA 348
LAM A++ A
Sbjct: 282 LAMEAAMRDA 291
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P55338|FABF_VIBHA 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/311 (45%), Positives = 203/311 (65%), Gaps = 24/311 (7%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GM++P+G E++W+ L+ G+ GI I E NF +++
Sbjct: 4 RRVVVTGMGMLSPVGNTVESSWKALLEGQSGIVNI--EHFDATNF------------STR 49
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
A +V +F+ +++ KD R + FI Y + A +AL D+ +++ R G
Sbjct: 50 FAGLVK------DFDCTEYMSKKDARKMDLFIQYGIAAGIQALDDSGLEITEE-NAARVG 102
Query: 159 VSIGGGIGSISDTVDAAQ-MICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
V+IG GIG + D ++A + EK R++SPFF+P ++NM +G++S+ G +GPN A
Sbjct: 103 VAIGSGIGGL-DLIEAGHSALVEKGPRKVSPFFVPSTIVNMVAGNLSIMRGLRGPNIAIS 161
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TAC TG H+IG AARMI +GD++ MVAGG E + L MAGF ++AL+T+ N PQ+AS
Sbjct: 162 TACTTGLHNIGHAARMIAYGDAEAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKAS 220
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RP+D GRDGFV+G+G+GV+VLEE EHAK RGAKIYAE+ G+GMSGDA+H+T P DG G
Sbjct: 221 RPWDKGRDGFVLGDGAGVMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGG 280
Query: 338 ILAMTRALKQA 348
LAM A++ A
Sbjct: 281 ALAMEAAMRDA 291
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio harveyi (taxid: 669) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|O34340|FABF_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis (strain 168) GN=fabF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/310 (45%), Positives = 194/310 (62%), Gaps = 23/310 (7%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
+RVVVTG+G ++PLG +T+W I G GI IT D + + +K
Sbjct: 4 KRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAE--------------EYPAK 49
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA + +FN + +++ K+ R + RF YA+ AA A+ DA +D+ R G
Sbjct: 50 VAAELK------DFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDE-IAPRVG 102
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V +G GIG + ++ K RR+SPFF+P ++ +MA+G +S+ G +G N VT
Sbjct: 103 VWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVT 162
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACATG +SIGDA ++IQ GD+DVMV GGTE+ + +S AGF ++AL+T N P+ ASR
Sbjct: 163 ACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALST--NPDPKTASR 220
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PFD RDGFV+GEG+G++VLEELEHA RGAKIY E+ GYG +GDA+HIT P DG+G
Sbjct: 221 PFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGEGGA 280
Query: 339 LAMTRALKQA 348
AM A+K A
Sbjct: 281 RAMQEAIKDA 290
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q8NXE1|FABF_STAAW 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MW2) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/314 (43%), Positives = 197/314 (62%), Gaps = 23/314 (7%)
Query: 35 LSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQ 94
+S +RVV+TG+G ++P+G +TTW + G GI +IT D + +H G+
Sbjct: 1 MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTE------PYSVHLAGE 54
Query: 95 LTSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQK 154
L + FN + ++ K+ R + RF YA+ AA EA+ DA+ L ++
Sbjct: 55 LKN--------------FNIEDHIDKKEARRMDRFTQYAIVAAREAVKDAQ-LDINENTA 99
Query: 155 ERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNH 214
+R GV IG GIG + A + + +K RR+SPFF+P ++ +MA+G VS+ G +GPN
Sbjct: 100 DRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNG 159
Query: 215 AAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274
A VTACATG +SIG+A +++Q GD+D M+ GGTE+ I +++AGF SRAL+T N +
Sbjct: 160 ATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST--NDDIE 217
Query: 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDG 334
A RPF GRDGFV+GEG+G+LV+E LE A+ RGA IYAE+ GYG +GDA+HIT P +G
Sbjct: 218 TACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEG 277
Query: 335 KGAILAMTRALKQA 348
+G AM A+ A
Sbjct: 278 EGGSRAMQAAMDDA 291
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Staphylococcus aureus (strain MW2) (taxid: 196620) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| TAIR|locus:2058359 | 461 | AT2G04540 [Arabidopsis thalian | 0.965 | 0.731 | 0.655 | 1.2e-115 | |
| TIGR_CMR|SPO_2271 | 421 | SPO_2271 "3-oxoacyl-(acyl carr | 0.839 | 0.695 | 0.486 | 1e-68 | |
| ASPGD|ASPL0000064843 | 430 | AN7489 [Emericella nidulans (t | 0.779 | 0.632 | 0.481 | 1.3e-68 | |
| UNIPROTKB|Q0C090 | 428 | fabF "3-oxoacyl-[acyl-carrier- | 0.833 | 0.679 | 0.464 | 1.4e-64 | |
| UNIPROTKB|E1BYY7 | 461 | OXSM "3-oxoacyl-[acyl-carrier- | 0.833 | 0.631 | 0.422 | 5.4e-63 | |
| UNIPROTKB|E2R866 | 460 | OXSM "3-oxoacyl-[acyl-carrier- | 0.828 | 0.628 | 0.442 | 2.1e-61 | |
| UNIPROTKB|G3V6R7 | 456 | Oxsm "3-oxoacyl-[acyl-carrier- | 0.828 | 0.633 | 0.436 | 6.4e-60 | |
| POMBASE|SPBC887.13c | 426 | SPBC887.13c "3-oxoacyl-[acyl-c | 0.836 | 0.685 | 0.422 | 8.1e-60 | |
| UNIPROTKB|Q9NWU1 | 459 | OXSM "3-oxoacyl-[acyl-carrier- | 0.828 | 0.629 | 0.436 | 3.5e-59 | |
| UNIPROTKB|F1MXW5 | 460 | OXSM "3-oxoacyl-[acyl-carrier- | 0.828 | 0.628 | 0.422 | 4.5e-59 |
| TAIR|locus:2058359 AT2G04540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
Identities = 228/348 (65%), Positives = 265/348 (76%)
Query: 1 MSNSSWRRLFFTRRFDLSRYFSSSSRAEVFDXXXXXXXXXXXXTGIGMVTPLGCGAETTW 60
M+ S+ RR R L+R+ S+SS TG+GMVTPLG G ETTW
Sbjct: 1 MATSNLRRHLSASRLRLNRFISTSS--------SYHSHRRVVVTGLGMVTPLGRGVETTW 52
Query: 61 RRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNS 120
RRLI GECGIR +T +DLKM +FD ET+L+ F QL+SKVAA VP G + GEF+E WLNS
Sbjct: 53 RRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWLNS 112
Query: 121 KDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICE 180
K ++A FI YA+CAADEAL DA+WLP+++ +KERTGV D V+AAQ+ICE
Sbjct: 113 K---AVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICE 169
Query: 181 KRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSD 240
KRLRRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA RMIQFGD+D
Sbjct: 170 KRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDAD 229
Query: 241 VMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXX 300
VMVAGGTESSIDALS+AGF +SRAL+TK+N +PQEASRPFDC RDGF
Sbjct: 230 VMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEE 289
Query: 301 XXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
HAK+RGAKIYAE+ GYGMSGDAHHITQP DGKGA+LAMTRAL+Q+
Sbjct: 290 YEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQS 337
|
|
| TIGR_CMR|SPO_2271 SPO_2271 "3-oxoacyl-(acyl carrier protein) synthase II" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 149/306 (48%), Positives = 189/306 (61%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G++TPL G E TW RL+ G+ G IT FD A G +T+ A V
Sbjct: 7 TGLGLITPLASGVEETWSRLLEGQSGAGPIT-------RFDAV----ASG-VTTTYACEV 54
Query: 104 PCGISS-GEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXX 162
P G S G FN D W+ K+ R I FI Y++ AA+ A DA WLP D+ + RTGV
Sbjct: 55 PRGDGSDGTFNPDDWMAPKEQRKIEDFILYSIAAAEMACKDANWLPEDEEDRLRTGVLIG 114
Query: 163 XXXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACAT 222
+ A +I EK RR+SPFFIP LIN+ASG VS+++GF+GPNH+ VTAC+T
Sbjct: 115 SGIGGLGSIAETANLIKEKGPRRVSPFFIPGALINLASGQVSIRHGFKGPNHSVVTACST 174
Query: 223 GAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282
GAH+IGDA+R+I+ GD+DVM+AGG E+ I + +AGF +AL+TKY P+ ASRP+D
Sbjct: 175 GAHAIGDASRIIRAGDADVMIAGGGEACICEIGIAGFNACKALSTKYADNPKAASRPYDA 234
Query: 283 GRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMT 342
RDGF HAK RGAKIYAEV GYGMSGDA+HIT P G GA +M
Sbjct: 235 DRDGFVMGEGAGIVVLEDYEHAKARGAKIYAEVLGYGMSGDAYHITAPSETGDGAERSMR 294
Query: 343 RALKQA 348
AL+ A
Sbjct: 295 AALRSA 300
|
|
| ASPGD|ASPL0000064843 AN7489 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 142/295 (48%), Positives = 182/295 (61%)
Query: 55 GAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI-SSGEFN 113
G TW+RL+ G CGI I D + + L ++AAVVP G + G +
Sbjct: 30 GVRRTWKRLLDGHCGIVNIRHRDAR------------YADLPCEIAAVVPSGARAEGRWT 77
Query: 114 EDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVD 173
WL+ D R +ARF YA+ AA+EAL DA+W P + Q E TGV + D
Sbjct: 78 ASEWLSKDDERKMARFAQYAMAAAEEALEDAEWKPKAEDQLEATGVCLGSGIGNFDEIYD 137
Query: 174 AAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARM 233
A K ++LSP F+P++LIN+ +GH+SMKYGF GPNH+A TAC TGAHSIGDAAR
Sbjct: 138 AVVAYDTKGYKKLSPLFVPKLLINLGAGHISMKYGFMGPNHSATTACTTGAHSIGDAARF 197
Query: 234 IQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXX 293
I GD+DVM+AGG ES I L++ GF ++R+L T YN P+++SRPFD RDGF
Sbjct: 198 IACGDADVMLAGGAESCIHPLAIGGFARARSLATAYNDRPEKSSRPFDADRDGFVVGEE- 256
Query: 294 XXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
HAK RGA+IYAEV+GYG SGDAHH+T P +G GA+LAM +ALK A
Sbjct: 257 ---------HAKARGARIYAEVKGYGCSGDAHHMTAPKANGGGALLAMKKALKNA 302
|
|
| UNIPROTKB|Q0C090 fabF "3-oxoacyl-[acyl-carrier-protein] synthase 2" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 145/312 (46%), Positives = 186/312 (59%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+V+PL G E TW RLI G+ G K+ NFD L K+A V
Sbjct: 9 TGIGIVSPLANGREATWERLIAGKSGAG-------KIDNFDAS-------DLPCKIAFQV 54
Query: 104 P--CGISSGE-----FNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKER 156
P G GE F+ D L+SK+ R I FI Y + AADEAL D+ QKER
Sbjct: 55 PWASGRGGGEGDEHAFDPDKVLSSKEQRRIDEFILYGIAAADEALADSGLKLETDDQKER 114
Query: 157 TGVXXXXXXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
GV + + + E R++SPFFIP LIN+ASG +S+++G +GPNH+
Sbjct: 115 AGVMIGSGIGGLETIYETSITLHEHGPRKVSPFFIPASLINLASGQISIRHGLKGPNHSV 174
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
VTACATGAH+IGD+AR+I +GD+DVMVAGG E+ I L +AGFC ++A++T +N TP++A
Sbjct: 175 VTACATGAHAIGDSARLISYGDADVMVAGGAEAVIGRLGIAGFCAAKAMSTSFNDTPEKA 234
Query: 277 SRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 336
SRP+D RDGF HAK RGAKIYAEV GYG++GDAHHIT P +G
Sbjct: 235 SRPYDKDRDGFVMGEGAAVLVLEEYEHAKARGAKIYAEVAGYGLTGDAHHITAPAEGAEG 294
Query: 337 AILAMTRALKQA 348
AM ALK +
Sbjct: 295 GYRAMKMALKNS 306
|
|
| UNIPROTKB|E1BYY7 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 129/305 (42%), Positives = 186/305 (60%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+V+PLG G + W+RL+ G+ GI + E+ + + +VAA V
Sbjct: 47 TGIGLVSPLGVGTQLVWKRLLQGDSGIASLDGEE--------------YAGVPCRVAACV 92
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G F E+S+++ + +S++ A+ AA+ A+ D+ W P + R GV
Sbjct: 93 PRGDEEGHFKEESFVSKSEIKSMSSATVMAIGAAELAMKDSGWSPQSEEDHLRAGVAIGM 152
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ D A + K ++SPFF+P+IL+NMA+GH+S+KY +GPNHA TAC TG
Sbjct: 153 GMVPLEEISDTASLFKTKGYSKVSPFFVPKILVNMAAGHISIKYQLKGPNHAVSTACTTG 212
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH+IGD+ R I GD+DVM+AGGTE+ I LS+AGF ++RAL+T +N +P++A RPFD
Sbjct: 213 AHAIGDSFRFIALGDADVMLAGGTEACISPLSLAGFARARALSTGFNASPKKACRPFDSQ 272
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
R+GF HA +RGA+IYAEV GYG+SGDA HIT P+ +G GA M+
Sbjct: 273 REGFVMGEGAAVLVLEEYRHAVQRGARIYAEVLGYGLSGDACHITAPNPEGDGAFRCMSA 332
Query: 344 ALKQA 348
A+K +
Sbjct: 333 AIKDS 337
|
|
| UNIPROTKB|E2R866 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 135/305 (44%), Positives = 181/305 (59%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G + W RLI GE GI + E+ K + VAA V
Sbjct: 48 TGIGLVTPLGVGTQLVWDRLIRGESGIMSLVGEEYK--------------SIPCSVAAYV 93
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE ++++ D +S++ A+ AA+ A+ D+ WLP + + TGV
Sbjct: 94 PRGCDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMRDSGWLPQSEADQAATGVAIGM 153
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A M K ++SPFF+P+IL+NMA+G VS++Y +GPNHA TAC TG
Sbjct: 154 GMVPLEIVSETALMFQTKGYSKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTG 213
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF
Sbjct: 214 AHAVGDSFRFIAQGDADVMVAGGTDSCISPLSLAGFSRARALST--NPDPKLACRPFHPK 271
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +RGA+IYAEV GYG+SGDA HIT P +G+GA+ M
Sbjct: 272 RDGFVMGEGAAVLVLEEYDHAVQRGARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAA 331
Query: 344 ALKQA 348
A+K A
Sbjct: 332 AVKDA 336
|
|
| UNIPROTKB|G3V6R7 Oxsm "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 133/305 (43%), Positives = 181/305 (59%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G + W RL+ GE GI + ++ K + VAA V
Sbjct: 44 TGIGLVTPLGVGTQLVWDRLLRGESGIVSVVGDEYK--------------SIPCSVAAFV 89
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE ++++ D +S++ A+ AA+ AL D+ W P + + TGV
Sbjct: 90 PRGSDKGQFNEQNFVSKSDAKSMSSPTIMAVGAAELALKDSGWYPKLEADQVATGVAIGM 149
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A M K ++SPFF+P+ILINMA+G VS++Y +GPNH+ TAC TG
Sbjct: 150 GMVPLEVVSETALMFQTKGYSKVSPFFVPKILINMAAGQVSIRYKLKGPNHSVSTACTTG 209
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R+I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF
Sbjct: 210 AHAVGDSFRLIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--NPDPKLACRPFHPE 267
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +RGA+IYAEV GYG+SGDA HIT P +G+GA+ M
Sbjct: 268 RDGFVMGEGAAVLVLEEHEHAVQRGARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAA 327
Query: 344 ALKQA 348
A+K A
Sbjct: 328 AVKDA 332
|
|
| POMBASE|SPBC887.13c SPBC887.13c "3-oxoacyl-[acyl-carrier-protein]-synthase condensing enzyme (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 129/305 (42%), Positives = 182/305 (59%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TG+G VTPLG G +T WR LI G+ GI + + F + Q+ SKVA V+
Sbjct: 7 TGLGAVTPLGNGVKTNWRNLIQGKSGI-------VSLKGFPE------YEQIPSKVAGVI 53
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G E+N +++ R +A F AL +A EAL DA+W+ D+ +K TGV
Sbjct: 54 PRGKEKEEWNVLDYVDQGKLREVATFTQLALTSAAEALKDARWIDIDEQEKLATGVCFGT 113
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
D ++ ++ + +R++SP I +ILINM +G++S +YGF NH TACA G
Sbjct: 114 GIGNLDDALNENGVLNKAGIRKVSPRVISKILINMPAGYISQRYGFTALNHTTTTACAAG 173
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
H+IGDA I+ G +DV++AGG+ES I+ L++AGF K+R+L+TK+N P+ ASRPFD
Sbjct: 174 CHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFNDNPKAASRPFDAN 233
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HAK R A IYAE+ GYG++ D++HIT P+ +G A AM R
Sbjct: 234 RDGFVIGEGSAALVLEELEHAKNRNAHIYAEIVGYGLASDSYHITAPNPNGDAAYYAMKR 293
Query: 344 ALKQA 348
+LKQA
Sbjct: 294 SLKQA 298
|
|
| UNIPROTKB|Q9NWU1 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 133/305 (43%), Positives = 177/305 (58%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G W RLI GE GI + E+ K + VAA V
Sbjct: 47 TGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYK--------------SIPCSVAAYV 92
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE ++++ D +S++ A+ AA+ A+ D+ W P + + TGV
Sbjct: 93 PRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGM 152
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A K ++SPFF+P+IL+NMA+G VS++Y +GPNHA TAC TG
Sbjct: 153 GMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTG 212
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF
Sbjct: 213 AHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--NSDPKLACRPFHPK 270
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +R A+IYAEV GYG+SGDA HIT P +G+GA+ M
Sbjct: 271 RDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAA 330
Query: 344 ALKQA 348
ALK A
Sbjct: 331 ALKDA 335
|
|
| UNIPROTKB|F1MXW5 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 129/305 (42%), Positives = 176/305 (57%)
Query: 44 TGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVV 103
TGIG+VTPLG G + W RL+ GE GI + ++ + + VAA V
Sbjct: 48 TGIGLVTPLGVGTQLVWDRLVRGESGIVSLVGDE--------------YQSIPCSVAAYV 93
Query: 104 PCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXX 163
P G G+FNE +++ D +S++ A+ AA+ AL DA W P + + TGV
Sbjct: 94 PRGCDEGQFNEQNFVPKSDTKSMSPPTVMAIAAAELALKDAGWHPQSEADQAATGVAIGM 153
Query: 164 XXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATG 223
+ A K ++SPFF+P+IL+NMASG VS+++ +GPNHA TAC TG
Sbjct: 154 GMVPLEVISETALTFQTKGYSKVSPFFVPKILVNMASGQVSIRHKLKGPNHAVSTACTTG 213
Query: 224 AHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283
AH++GD+ R + GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF
Sbjct: 214 AHAVGDSFRFVAHGDADVMVAGGTDSCISPLSLAGFARARALST--NTDPKSACRPFHPQ 271
Query: 284 RDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
RDGF HA +RGA++YAE+ GYG+SGDA HIT P G+GA M
Sbjct: 272 RDGFVMGEGAAVLVLEEHRHALRRGARVYAEIVGYGLSGDAGHITAPDPGGEGAFRCMAA 331
Query: 344 ALKQA 348
A+K A
Sbjct: 332 AVKDA 336
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L3X9 | KASM_ARATH | 2, ., 3, ., 1, ., 4, 1 | 0.7327 | 0.9656 | 0.7310 | yes | no |
| P56902 | FABF_RHIME | 2, ., 3, ., 1, ., 1, 7, 9 | 0.5352 | 0.8510 | 0.7054 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00025980001 | SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (418 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00024012001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (392 aa) | • | • | • | • | • | • | 0.996 | ||
 | GSVIVG00007299001 | SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (431 aa) | • | • | • | • | • | 0.994 | |||
 | GSVIVG00024709001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (393 aa) | • | • | 0.927 | ||||||
 | GSVIVG00017895001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (269 aa) | • | • | • | 0.921 | |||||
 | GSVIVG00035074001 | SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (269 aa) | • | • | • | 0.921 | |||||
 | GSVIVG00025373001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (369 aa) | • | • | 0.913 | ||||||
 | GSVIVG00016807001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (421 aa) | • | • | 0.902 | ||||||
 | GSVIVG00025486001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (248 aa) | • | 0.900 | |||||||
 | GSVIVG00034687001 | RecName- Full=Acyl-[acyl-carrier protein] desaturase; EC=1.14.19.2;; Converts stearoyl-ACP to o [...] (392 aa) | • | 0.899 | |||||||
 | GSVIVG00034686001 | SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (262 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 349 | |||
| PLN02836 | 437 | PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protei | 0.0 | |
| PRK07314 | 411 | PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protei | 1e-150 | |
| TIGR03150 | 407 | TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protei | 1e-147 | |
| cd00834 | 406 | cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier prot | 1e-135 | |
| PRK06333 | 424 | PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protei | 1e-128 | |
| PTZ00050 | 421 | PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein | 1e-126 | |
| COG0304 | 412 | COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) sy | 1e-113 | |
| PRK08439 | 406 | PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protei | 4e-91 | |
| PRK08722 | 414 | PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protei | 1e-87 | |
| PLN02787 | 540 | PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protei | 2e-68 | |
| PRK14691 | 342 | PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protei | 9e-65 | |
| PRK07967 | 406 | PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protei | 2e-60 | |
| PRK07910 | 418 | PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protei | 3e-57 | |
| PRK09116 | 405 | PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protei | 3e-56 | |
| pfam00109 | 243 | pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, | 4e-56 | |
| cd00828 | 407 | cd00828, elong_cond_enzymes, "elongating" condensi | 1e-47 | |
| PRK06501 | 425 | PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protei | 2e-38 | |
| PRK05952 | 381 | PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protei | 2e-37 | |
| cd00832 | 399 | cd00832, CLF, Chain-length factor (CLF) is a facto | 1e-33 | |
| PRK07103 | 410 | PRK07103, PRK07103, polyketide beta-ketoacyl:acyl | 6e-32 | |
| cd00833 | 421 | cd00833, PKS, polyketide synthases (PKSs) polymeri | 8e-29 | |
| cd00825 | 332 | cd00825, decarbox_cond_enzymes, decarboxylating co | 2e-28 | |
| PRK09185 | 392 | PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protei | 5e-23 | |
| TIGR02813 | 2582 | TIGR02813, omega_3_PfaA, polyketide-type polyunsat | 3e-16 | |
| COG3321 | 1061 | COG3321, COG3321, Polyketide synthase modules and | 1e-15 | |
| smart00825 | 298 | smart00825, PKS_KS, Beta-ketoacyl synthase | 5e-13 | |
| cd00327 | 254 | cd00327, cond_enzymes, Condensing enzymes; Family | 9e-12 | |
| cd00751 | 386 | cd00751, thiolase, Thiolase are ubiquitous enzymes | 2e-06 | |
| PRK06519 | 398 | PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protei | 2e-05 | |
| pfam02801 | 119 | pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase | 4e-05 | |
| PRK05790 | 393 | PRK05790, PRK05790, putative acyltransferase; Prov | 9e-05 | |
| PRK06147 | 348 | PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protei | 1e-04 | |
| PRK05952 | 381 | PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protei | 2e-04 | |
| PRK09052 | 399 | PRK09052, PRK09052, acetyl-CoA acetyltransferase; | 3e-04 | |
| TIGR01930 | 386 | TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltrans | 3e-04 | |
| pfam00108 | 262 | pfam00108, Thiolase_N, Thiolase, N-terminal domain | 4e-04 | |
| COG0183 | 392 | COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid | 0.002 |
| >gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Score = 587 bits (1516), Expect = 0.0
Identities = 244/315 (77%), Positives = 278/315 (88%), Gaps = 3/315 (0%)
Query: 34 PLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFG 93
P P RRVVVTG+G+VTPLGCG ETTWRRLI GECG+R +T +DLKM + D ETQL+
Sbjct: 1 PPLPTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLD 60
Query: 94 QLTSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQ 153
QL S+VAA+VP G G+F+E+ WLN RS +RFI YALCAADEAL DA+WLPS+
Sbjct: 61 QLPSRVAALVPRGTGPGDFDEELWLN---SRSSSRFIGYALCAADEALSDARWLPSEDEA 117
Query: 154 KERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPN 213
KERTGVSIGGGIGSI+D ++AAQ+ICEKRLRRLSPFF+PRILINMA+GHVS++YGFQGPN
Sbjct: 118 KERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRYGFQGPN 177
Query: 214 HAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273
HAAVTACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N P
Sbjct: 178 HAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCP 237
Query: 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID 333
EASRPFDC RDGFVIGEG+GVLVLEELEHAK+RGAKIYAEVRGYGMSGDAHHITQPH D
Sbjct: 238 TEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHED 297
Query: 334 GKGAILAMTRALKQA 348
G+GA+LAMTRAL+Q+
Sbjct: 298 GRGAVLAMTRALQQS 312
|
Length = 437 |
| >gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 429 bits (1106), Expect = e-150
Identities = 163/311 (52%), Positives = 213/311 (68%), Gaps = 22/311 (7%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
RRVVVTG+G V+PLG E+TW+ L+ G+ GI IT +FD L
Sbjct: 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPIT-------HFDTS-------DLAV 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
K+A V +FN D +++ K+ R + RFI Y + AA +A+ DA +++ +R
Sbjct: 47 KIAGEVK------DFNPDDYMSRKEARRMDRFIQYGIAAAKQAVEDAGLEITEE-NADRI 99
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV IG GIG + + + EK RR+SPFF+P +INMA+GHVS++YG +GPNH+ V
Sbjct: 100 GVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHSIV 159
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACATGAH+IGDAAR+I +GD+DVMVAGG E++I L +AGF +RAL+T+ N P+ AS
Sbjct: 160 TACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTR-NDDPERAS 218
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPFD RDGFV+GEG+G+LVLEELEHAK RGAKIYAEV GYGM+GDA+H+T P DG+GA
Sbjct: 219 RPFDKDRDGFVMGEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGA 278
Query: 338 ILAMTRALKQA 348
AM ALK A
Sbjct: 279 ARAMKLALKDA 289
|
Length = 411 |
| >gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Score = 422 bits (1087), Expect = e-147
Identities = 163/310 (52%), Positives = 207/310 (66%), Gaps = 22/310 (7%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+G VTPLG G E W L+ G+ GI IT FD L K
Sbjct: 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPIT-------RFDAS-------DLPVK 46
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+A V +F+ + +++ K+ R + RFI YAL AA EA+ D+ ++ ER G
Sbjct: 47 IAGEVK------DFDPEDYIDKKEARRMDRFIQYALAAAKEAVEDSGLDIEEE-DAERVG 99
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V IG GIG + + ++ EK RR+SPFFIP +INMA+G +S++YG +GPNHA VT
Sbjct: 100 VIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAVVT 159
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACATG H+IGDA R+IQ GD+DVM+AGG E++I L +AGF +AL+T N P++ASR
Sbjct: 160 ACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALST-RNDDPEKASR 218
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PFD RDGFV+GEG+GVLVLEELEHAK RGAKIYAE+ GYGMSGDA+HIT P +G+GA
Sbjct: 219 PFDKDRDGFVMGEGAGVLVLEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAA 278
Query: 339 LAMTRALKQA 348
AM ALK A
Sbjct: 279 RAMRAALKDA 288
|
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 407 |
| >gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Score = 391 bits (1006), Expect = e-135
Identities = 155/310 (50%), Positives = 203/310 (65%), Gaps = 22/310 (7%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TG+G VTPLG G E W L+ G GIR IT D S+
Sbjct: 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFD--------------ASGFPSR 46
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+A VP +F+ + +L+ K+ R + RF +AL AA+EAL DA P + ER G
Sbjct: 47 IAGEVP------DFDPEDYLDRKELRRMDRFAQFALAAAEEALADAGLDPEELD-PERIG 99
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V IG GIG ++ +A + + EK RR+SPFF+P L NMA+G V+++ G +GPN+ T
Sbjct: 100 VVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVST 159
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACA+GAH+IGDAAR+I+ G +DV++AGG E+ I L++AGF RAL+T+ + P++ASR
Sbjct: 160 ACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRND-DPEKASR 218
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PFD RDGFV+GEG+GVLVLE LEHAK RGAKIYAE+ GYG S DA+HIT P DG+GA
Sbjct: 219 PFDKDRDGFVLGEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAA 278
Query: 339 LAMTRALKQA 348
AM AL A
Sbjct: 279 RAMRAALADA 288
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. Length = 406 |
| >gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 372 bits (957), Expect = e-128
Identities = 154/312 (49%), Positives = 205/312 (65%), Gaps = 16/312 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
+R+VVTG+G V+PLGCG ET W+RL+ G+ GIR +T + G L +K
Sbjct: 4 KRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPV--------------GDLATK 49
Query: 99 VAAVVPCGISSGE--FNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKER 156
+ VP E F+ D +L+ KD R + RFI +A+ AA EAL A W P +ER
Sbjct: 50 IGGQVPDLAEDAEAGFDPDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPDTLEDRER 109
Query: 157 TGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
T IG G+G +A + + + RRLSPF IP L NMA+GHVS++YGF+GP A
Sbjct: 110 TATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYGFKGPLGAP 169
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
VTACA G +IGDAAR+I+ G++DV V GGTE++ID +S+AGF +RAL+T++N P++A
Sbjct: 170 VTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQA 229
Query: 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 336
SRPFD RDGFV+GEG+G+LV+E LEHA RGA AE+ GYG S DA+H+T DG+G
Sbjct: 230 SRPFDRDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEG 289
Query: 337 AILAMTRALKQA 348
A AM AL+QA
Sbjct: 290 ARRAMLIALRQA 301
|
Length = 424 |
| >gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Score = 367 bits (944), Expect = e-126
Identities = 152/304 (50%), Positives = 201/304 (66%), Gaps = 11/304 (3%)
Query: 48 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 107
+VTPLG GAE+TW LI G+ GIR++T + + E + + A +PC I
Sbjct: 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKAL------ENLVAAMPCQI 54
Query: 108 SSGEFNEDSWLNSKDHRSIA---RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGG 164
++ + + D R +A+ AA EAL DAK + +ER GV+IG G
Sbjct: 55 AAEVDQSE--FDPSDFAPTKRESRATHFAMAAAREALADAKLDILSEKDQERIGVNIGSG 112
Query: 165 IGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGA 224
IGS++D D + + EK R+SP+FIP+IL NMA+G V++K+ +GP+ +AVTACATGA
Sbjct: 113 IGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGA 172
Query: 225 HSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284
H IG+A R I++G++D+M+ GGTE+SI +S AGF + RAL TKYN PQ ASRPFD R
Sbjct: 173 HCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDR 232
Query: 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRA 344
GFV+GEG+G+LVLEELEHA +RGAKIYAE+RGYG S DAHHIT PH DG+GA M A
Sbjct: 233 AGFVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENA 292
Query: 345 LKQA 348
LK
Sbjct: 293 LKDG 296
|
Length = 421 |
| >gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 335 bits (861), Expect = e-113
Identities = 147/311 (47%), Positives = 196/311 (63%), Gaps = 25/311 (8%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TG+G+V+ LG G E W L+ G+ GIR IT FD L K
Sbjct: 3 RRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPIT-------RFDASG-------LGVK 48
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+A + + D + K+ R + RF A+ AA EAL DA + R G
Sbjct: 49 IAGEIK--------DLDDQIAKKERRFMDRFSQLAVVAAVEALEDAGLDN-ELNVDMRVG 99
Query: 159 VSIGGGIGSISDTVDAA-QMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
V+IG GIG + D ++ E +R+SPF +P++L N+A+G+V++ +G +GPN+ V
Sbjct: 100 VAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPV 159
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACATGAH+IGDA R+I+ G +DV++AGG E++I L +AGF RAL+T+ N P++AS
Sbjct: 160 TACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTR-NDDPEKAS 218
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPFD RDGFVIGEG+G LVLEELEHA RGAKIYAE+ GYG + DA+HIT P DG+GA
Sbjct: 219 RPFDKNRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGA 278
Query: 338 ILAMTRALKQA 348
I AM AL A
Sbjct: 279 IRAMRAALADA 289
|
Length = 412 |
| >gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 4e-91
Identities = 134/312 (42%), Positives = 193/312 (61%), Gaps = 26/312 (8%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
++RVVVTGIGM+ LG E++++ + GECGI++IT FD
Sbjct: 1 MKRVVVTGIGMINSLGLNKESSFKAICNGECGIKKIT-------LFDAS-------DFPV 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
++A + +F+ ++ K+ + RFI L AA EA+ DA +LP + ER
Sbjct: 47 QIAGEIT------DFDPTEVMDPKEVKKADRFIQLGLKAAREAMKDAGFLPEEL-DAERF 99
Query: 158 GVSIGGGIGSISDTVDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
GVS GIG + ++ +IC ++ R++SPFFIP L+NM G +S+++G +GPN ++
Sbjct: 100 GVSSASGIGGLP-NIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLSS 158
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
VTACA G H+I +A + I G +D M+ G ES+I + + GF +AL+T+ N P++A
Sbjct: 159 VTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTR-NDDPKKA 217
Query: 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 336
SRPFD RDGFV+GEG+G LVLEE E AKKRGAKIYAE+ G+G SGDA+HIT P + G
Sbjct: 218 SRPFDKDRDGFVMGEGAGALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAPE--G 275
Query: 337 AILAMTRALKQA 348
+ AM AL+ A
Sbjct: 276 PLRAMKAALEMA 287
|
Length = 406 |
| >gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 269 bits (689), Expect = 1e-87
Identities = 142/310 (45%), Positives = 199/310 (64%), Gaps = 22/310 (7%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GM++P+G E++W+ L+ G+ GI I E NF +++
Sbjct: 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNI--EHFDTTNF------------STR 49
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
A +V +FN + +++ KD R + FI Y + A +AL D+ L + R G
Sbjct: 50 FAGLVK------DFNCEEYMSKKDARKMDLFIQYGIAAGIQALDDSG-LEVTEENAHRIG 102
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG GIG + Q + EK R++SPFF+P ++NM +G++S+ G +GPN A T
Sbjct: 103 VAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAIST 162
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TG H+IG AARMI +GD+D MVAGG E + L MAGF ++AL+T+ N PQ+ASR
Sbjct: 163 ACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKASR 221
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
P+D RDGFV+G+G+G++VLEE EHAK RGAKIYAE+ G+GMSGDA+H+T P DG G
Sbjct: 222 PWDKDRDGFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGA 281
Query: 339 LAMTRALKQA 348
LAM A++ A
Sbjct: 282 LAMEAAMRDA 291
|
Length = 414 |
| >gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 2e-68
Identities = 124/320 (38%), Positives = 184/320 (57%), Gaps = 30/320 (9%)
Query: 34 PLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFG 93
PL+ RRVVVTG+G+V+PLG + + L+ G GI EI D
Sbjct: 124 PLTKQRRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCS-------------- 169
Query: 94 QLTSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPS--DQ 151
Q +++A + F+ D W+ K + + +F+ Y L A +AL D +
Sbjct: 170 QFPTRIAGEIK------SFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMKE 223
Query: 152 GQKERTGVSIG---GGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208
K + GV IG GG+ +D ++A ++ R+++PF +P NM S ++M G
Sbjct: 224 LDKTKCGVLIGSAMGGMKVFNDAIEALRI----SYRKMNPFCVPFATTNMGSAMLAMDLG 279
Query: 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK 268
+ GPN++ TACAT I +AA I G++DVM+ GG++++I + + GF RAL+ +
Sbjct: 280 WMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQR 339
Query: 269 YNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHIT 328
N P +ASRP+D RDGFV+GEG+GVL+LEELEHAKKRGA IYAE G + DA+H+T
Sbjct: 340 -NDDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMT 398
Query: 329 QPHIDGKGAILAMTRALKQA 348
+PH +G G IL + +AL Q+
Sbjct: 399 EPHPEGAGVILCIEKALAQS 418
|
Length = 540 |
| >gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 9e-65
Identities = 104/196 (53%), Positives = 138/196 (70%)
Query: 153 QKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGP 212
++ERT IG GIG A + + +RLSPF +P L+N+A+GHVS+K+ F+GP
Sbjct: 24 KQERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIKHHFKGP 83
Query: 213 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
A VTACA G +IGDA RMI+ ++DV + GG E+ ID +S+AGF +RAL+T +N T
Sbjct: 84 IGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNST 143
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
P++ASRPFD RDGFV+GEG+G+L++EELEHA RGAK AE+ GYG S DA+H+T
Sbjct: 144 PEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAE 203
Query: 333 DGKGAILAMTRALKQA 348
DG GA AM AL+QA
Sbjct: 204 DGDGAYRAMKIALRQA 219
|
Length = 342 |
| >gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 2e-60
Identities = 112/313 (35%), Positives = 166/313 (53%), Gaps = 34/313 (10%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RRVV+TG+G+V+ +G + L G GI +PE +MG + +G +
Sbjct: 1 MRRVVITGLGIVSSIGNNQQEVLASLREGRSGIT-FSPEFAEMG-----MRSQVWGNVKL 54
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFI----AYALCAADEALHDAKWLPSDQGQ 153
++ R + RF+ AYA A ++A+ DA L +Q
Sbjct: 55 DPTGLI-------------------DRKVMRFMGDASAYAYLAMEQAIADAG-LSEEQVS 94
Query: 154 KERTGVSIGGGIGSISDTVDAAQ-MICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGP 212
RTG+ G G GS + V+AA M + +R+ P+ + + + + S ++ + +G
Sbjct: 95 NPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGV 154
Query: 213 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
N++ +ACAT AH IG+A IQ G D++ AGG E +S F AL+TKYN T
Sbjct: 155 NYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELDWEMSCL-FDAMGALSTKYNDT 213
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
P++ASR +D RDGFVI G GV+V+EELEHA RGAKIYAE+ GYG + D + + P
Sbjct: 214 PEKASRAYDANRDGFVIAGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP-- 271
Query: 333 DGKGAILAMTRAL 345
G+GA+ M AL
Sbjct: 272 SGEGAVRCMQMAL 284
|
Length = 406 |
| >gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 3e-57
Identities = 103/308 (33%), Positives = 154/308 (50%), Gaps = 22/308 (7%)
Query: 41 VVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVA 100
VVVTGI M T L AETTW+ L+ G+ GIR + +D + FD ++ G L
Sbjct: 14 VVVTGIAMTTALATDAETTWKLLLDGQSGIRTL--DDPFVEEFDLPVRIG--GHLLE--- 66
Query: 101 AVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVS 160
D L + R ++ + +A S + R VS
Sbjct: 67 ------------EFDHQLTRVELRRMSYLQRMSTVLGRRVWENAG---SPEVDTNRLMVS 111
Query: 161 IGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTAC 220
IG G+GS + V A + + LR +SP + + N + V ++ + V+AC
Sbjct: 112 IGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAGVITPVSAC 171
Query: 221 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPF 280
A+G+ +I A R I G++D+ + GG E+ I+A+ +AGF + R + + N P A RPF
Sbjct: 172 ASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPF 231
Query: 281 DCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILA 340
D RDGFV GEG ++V+E EHAK RGA I A + G ++ D H+ P +G+ A A
Sbjct: 232 DKDRDGFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHA 291
Query: 341 MTRALKQA 348
MTRA++ A
Sbjct: 292 MTRAIELA 299
|
Length = 418 |
| >gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 3e-56
Identities = 108/317 (34%), Positives = 152/317 (47%), Gaps = 37/317 (11%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+G VT LG +T RL G +R +M +DR L+ +
Sbjct: 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVR-------RMPEWDRYDGLNT------R 48
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+AA + +F + K RS+ R A A++ AL DA L R G
Sbjct: 49 LAAPID------DFELPAHYTRKKIRSMGRVSLMATRASELALEDAGLLGDPILTDGRMG 102
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
++ G GS M+ E + ++ R++ + + +V + +G +G +
Sbjct: 103 IAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKGRVIPTSS 162
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRAL-------TTKYNG 271
AC +G+ IG A I++G VM+AGG E C + A T+ N
Sbjct: 163 ACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE---------LCPTEAAVFDTLFATSTRND 213
Query: 272 TPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPH 331
P+ RPFD RDG VIGEG+G LVLEELEHAK RGA IYAE+ G+G + D H+TQP
Sbjct: 214 APELTPRPFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQ 273
Query: 332 IDGKGAILAMTRALKQA 348
+ +AM ALK A
Sbjct: 274 AETMQ--IAMELALKDA 288
|
Length = 405 |
| >gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 4e-56
Identities = 82/270 (30%), Positives = 120/270 (44%), Gaps = 32/270 (11%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
V +TG+G P G G E W L+ G IRE + + S+
Sbjct: 2 EPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADLSGL-------------YPPSR 48
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIA---RFIAYALCAADEALHDAKWLPSDQGQKE 155
VA + F+ D+ R AL AA EAL DA P+ +
Sbjct: 49 VAGEIYG------FDFDAAFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSD 102
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
RTGV +G G G D + + RR+SP+ + ++A+G +S + G +GP+
Sbjct: 103 RTGVFVGSGSG---DYAELQALDSAGGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVT 159
Query: 216 AVTACATGAHSIGDAA-RMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274
TAC++ AA R I+ G+ D+ +AGG E+ + AGF + AL + P
Sbjct: 160 VDTACSSS-LVALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPDG--PC 216
Query: 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHA 304
+A PF DGFV GEG G ++L+EL A
Sbjct: 217 KAFDPFA---DGFVRGEGVGAVLLKELSEA 243
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine. Length = 243 |
| >gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-47
Identities = 100/316 (31%), Positives = 141/316 (44%), Gaps = 35/316 (11%)
Query: 39 RRVVVTGIGMVTPLGCGAETT---WRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQL 95
RVV+TGIG+V+P G G + W L G GI + +
Sbjct: 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLKSRF--------------- 45
Query: 96 TSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKE 155
VA +P G G +K + R AL A +EAL DA +
Sbjct: 46 DRGVAGQIPTGDIPGWD-------AKRTGIVDRTTLLALVATEEALADAGITDPYEVHPS 98
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR--ILINMASGHVSMKYGF-QGP 212
GV +G G+G + + + R ++P+ P+ + N +G V++ GP
Sbjct: 99 EVGVVVGSGMGGL----RFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLSSHGP 154
Query: 213 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
V ACAT ++ A I+ G +D++V GG E ++ ++GF AL+T
Sbjct: 155 IKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPLE-EGLSGFANMGALSTAEEE- 212
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
P+E SRPFD RDGFV EG+GVLVLE E A RGA IY V G + D + P
Sbjct: 213 PEEMSRPFDETRDGFVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVP-A 271
Query: 333 DGKGAILAMTRALKQA 348
GKG A+ AL +A
Sbjct: 272 GGKGIARAIRTALAKA 287
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. Length = 407 |
| >gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-38
Identities = 99/323 (30%), Positives = 142/323 (43%), Gaps = 48/323 (14%)
Query: 41 VVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVA 100
V VTG+G+VT LG G W L GE GI IT F E L +++A
Sbjct: 13 VAVTGMGVVTSLGQGKADNWAALTAGESGIHTIT-------RFPTEG-------LRTRIA 58
Query: 101 AVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQG-------- 152
V +F +S + A A A AA+EAL A D
Sbjct: 59 GTV-------DFLPESPFGA-----SALSEALARLAAEEALAQAGIGKGDFPGPLFLAAP 106
Query: 153 -------QKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM 205
+ ++G +D +++ R R R + ++
Sbjct: 107 PVELEWPARFALAAAVGD-----NDAPSYDRLLRAARGGRFDALH-ERFQFGSIADRLAD 160
Query: 206 KYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRAL 265
++G +G + TACA+GA +I I+ G++D + T+ S+ A ++ F AL
Sbjct: 161 RFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSAL 220
Query: 266 TTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH 325
+T+ N P++AS+PF RDGFV+ EG+G LVLE LE A RGAKI V G G D+
Sbjct: 221 STQ-NDPPEKASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSF 279
Query: 326 HITQPHIDGKGAILAMTRALKQA 348
H T+ DG AI A+ AL A
Sbjct: 280 HRTRSSPDGSPAIGAIRAALADA 302
|
Length = 425 |
| >gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-37
Identities = 61/155 (39%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Query: 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 253
L + A+ + + G QGP A + ACATG +I +IQ G ++AG E+ I
Sbjct: 120 TLPHQAAIAAARQIGTQGPVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITP 179
Query: 254 LSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYA 313
L++AGF + AL + + PFD R+G V+GEG +LVLE E A+KRGAKIY
Sbjct: 180 LTLAGFQQMGALA-------KTGAYPFDRQREGLVLGEGGAILVLESAELAQKRGAKIYG 232
Query: 314 EVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
++ G+G++ DA+H++ P DGK AI A+ + L ++
Sbjct: 233 QILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARS 267
|
Length = 381 |
| >gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 1e-33
Identities = 84/285 (29%), Positives = 129/285 (45%), Gaps = 24/285 (8%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RR VVTGIG+V P G G E W+ ++ G G+ IT D ++
Sbjct: 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDP--------------SGYPAR 46
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+A VP + E L D R AL AAD AL DA P+ + G
Sbjct: 47 LAGEVP-DFDAAEHLPGRLLPQTD-----RMTRLALAAADWALADAGVDPAALPPYDM-G 99
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V G Q + K R +S + + +G +S+++G +GP+ V
Sbjct: 100 VVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVVVA 159
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
A G ++ A R+++ G + ++V+GG +S++ S L+T + P A
Sbjct: 160 EQAGGLDALAQARRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYL 216
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGD 323
PFD G+V GEG +LVLE+ A++RGA++Y E+ GY + D
Sbjct: 217 PFDAAAAGYVPGEGGAILVLEDAAAARERGARVYGEIAGYAATFD 261
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. Length = 399 |
| >gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 6e-32
Identities = 86/318 (27%), Positives = 133/318 (41%), Gaps = 35/318 (11%)
Query: 40 RVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKV 99
VVVTG+G+V+ +G G + L+ G M R+ A L S
Sbjct: 3 EVVVTGVGVVSAIGQGRPSFAAALLAGRHAFG-------VMRRPGRQVPDDAGAGLASAF 55
Query: 100 AAVVPCGISSGEFNEDSWLNSKDHRSIARFIAY----ALCAADEALHDAKWLPSDQGQKE 155
E + + D + R + AL AA EA DA P D +
Sbjct: 56 IG--------AELDSLALPERLD-AKLLRRASLSAQAALAAAREAWRDAALGPVD---PD 103
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR-ILINMASGHV---SMKYGFQG 211
R G+ +GG + + R F P L M + V S ++G +G
Sbjct: 104 RIGLVVGGSNLQQREQALVHE-----TYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRG 158
Query: 212 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRAL-TTKYN 270
A A+G ++ AAR++Q G D +A G + A+ + ++
Sbjct: 159 EGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFA 218
Query: 271 GTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 330
P+ A RPFD RDGF+ GE G +VLE E A++RGA+ YA++ G+ M DA+ P
Sbjct: 219 DEPEAACRPFDQDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDP 278
Query: 331 HIDGKGAILAMTRALKQA 348
++G+ + AL++A
Sbjct: 279 SLEGEMR--VIRAALRRA 294
|
Length = 410 |
| >gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 8e-29
Identities = 72/315 (22%), Positives = 122/315 (38%), Gaps = 30/315 (9%)
Query: 40 RVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKV 99
+ + G+ P + W L+ G I EI + + G+ ++
Sbjct: 2 PIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPED--RWDADGYYPDPGKPGKTYTRR 59
Query: 100 AAVVPCGISSGEFNEDSWLNSKDHRSIARFI----AYALCAADEALHDAKWLPSDQGQKE 155
+ + + A + L A EAL DA + P +
Sbjct: 60 GGFLD------DVDAFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGYSP-ESLAGS 112
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
RTGV +G S SD + + + + + +S + +GP+
Sbjct: 113 RTGVFVGA---SSSDY----LELLARDPDEIDAYAATGTSRAFLANRISYFFDLRGPSLT 165
Query: 216 AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
TAC++ ++ A + ++ G+ D+ + GG + GF K+ L+ P
Sbjct: 166 VDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS------PDG 219
Query: 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMS--GDAHHITQPHID 333
RPFD DG+V GEG GV+VL+ L A + G +IYA +RG ++ G IT P
Sbjct: 220 RCRPFDADADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPS-- 277
Query: 334 GKGAILAMTRALKQA 348
G+ + RA +A
Sbjct: 278 GEAQAALIRRAYARA 292
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. Length = 421 |
| >gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-28
Identities = 72/221 (32%), Positives = 105/221 (47%), Gaps = 12/221 (5%)
Query: 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLS 187
AA+ A+ DA L + + GV +G G GS Q+ +R +
Sbjct: 10 YVSILGFEAAERAIADAG-LSREYQKNPIVGVVVGTGGGS-----PRFQVFGADAMRAVG 63
Query: 188 PFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGT 247
P+ + + + ASG ++ G GP + ACA H++ AA +Q G D+++AGG+
Sbjct: 64 PYVVTKAMFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGS 123
Query: 248 ESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKR 307
E A M + + TP++ASR FD DGFV G+G+G LV+EELEHA R
Sbjct: 124 E--ELAAPMDCEFDAMGALS----TPEKASRTFDAAADGFVFGDGAGALVVEELEHALAR 177
Query: 308 GAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
GA IYAE+ G + D + +G A AL A
Sbjct: 178 GAHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVA 218
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). Length = 332 |
| >gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 5e-23
Identities = 81/332 (24%), Positives = 124/332 (37%), Gaps = 86/332 (25%)
Query: 41 VVVTGIGMVTPLGCGAETTWRRLIVGEC-GIREITPEDLKMGNFDRETQLHAFGQLTSKV 99
V ++ G + LG G + L G G+R P D D T G++
Sbjct: 4 VYISAFGATSALGRGLDAILAALRAGRASGMR---PCD--FWLVDLPT---WVGEVVGVE 55
Query: 100 AAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAA---DEALHDAKWLPSDQGQKER 156
+P +++ + +++R AL A + A+ A + +R
Sbjct: 56 LPALPAALAA--------FDCRNNR-------LALLALQQIEPAVEAAI----ARYGADR 96
Query: 157 TGVSIGGGIGSISDTVDAAQMICEKRLRRLSP--------FFIPRILINMASGHVSMKYG 208
GV +G I + E RR P + + + + + G
Sbjct: 97 IGVVLGTSTSGILEG--------ELAYRRRDPAHGALPADYHYAQQELGSLADFLRAYLG 148
Query: 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTES----------SIDALSMAG 258
GP + TAC++ A A R+++ G D + GG +S S+++LS
Sbjct: 149 LSGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDSLCRLTLNGFNSLESLS-PQ 207
Query: 259 FCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVR-- 316
C RPF RDG IGE + +LE R A V
Sbjct: 208 PC-----------------RPFSANRDGINIGEAAAFFLLE-------REDD--AAVALL 241
Query: 317 GYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
G G S DAHH++ PH +G GAILAM +AL A
Sbjct: 242 GVGESSDAHHMSAPHPEGLGAILAMQQALADA 273
|
Length = 392 |
| >gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 40/243 (16%)
Query: 133 ALCAADEALHDAKWLPSDQGQKERTGVSIG-GGIGSISDTVDA----------------- 174
+L A E L+DA LP +++ G+++G GG S +++A
Sbjct: 97 SLVVAKEVLNDAG-LPDGY-DRDKIGITLGVGGGQKQSSSLNARLQYPVLKKVFKASGVE 154
Query: 175 ---AQMICEKRLRRLSPF---FIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIG 228
++M+ +K + + P L N+ SG ++ ++ G N ACA +I
Sbjct: 155 DEDSEMLIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIR 214
Query: 229 DAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288
A + G S++M+ GG + F K+ A TT E +PFD G +
Sbjct: 215 MALSELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFTT------NEDIQPFDIDSKGMM 268
Query: 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH--HITQPHIDGKGAILAMTRALK 346
IGEG G++ L+ LE A++ G +IYA ++G G S D I P +G+ +ALK
Sbjct: 269 IGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPEGQA------KALK 322
Query: 347 QAY 349
+AY
Sbjct: 323 RAY 325
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582 |
| >gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 74/315 (23%), Positives = 128/315 (40%), Gaps = 39/315 (12%)
Query: 48 MVTPLGC---GA---ETTWRRLIVGECGIREITPEDLKM-GNFDRETQLHAFGQLTSKVA 100
+ + C GA E W L G I E+ + + +D + G+ S+
Sbjct: 7 AIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDP--TVPGKSYSRWG 64
Query: 101 AVVPC--GISSGEFNEDSWLNSKDHRSI---ARFIAYALCAADEALHDAKWLPSDQGQKE 155
+ + F ++ ++ ++ R + L A EAL DA P D +
Sbjct: 65 GFLDDVDDFDALFFG----ISPREAEAMDPQQRLL---LEVAWEALEDAGIYP-DSLRGS 116
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
TGV G + + A + I ++A+G +S G GP+
Sbjct: 117 ATGVFAGASVADYLLLLLAD-------DEAEPEYAITGNSSSVAAGRISYVLGLSGPSVT 169
Query: 216 AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
TAC++ ++ A + ++ G+ D+ +AGG + S F L+ P
Sbjct: 170 VDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS------PDG 223
Query: 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH--HITQPHID 333
+ FD DG+V GEG+GV+VL+ L A++ G +IYA +RG ++ D +T P +
Sbjct: 224 RCKAFDADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAP--N 281
Query: 334 GKGAILAMTRALKQA 348
+ + AL A
Sbjct: 282 LEAQADVIREALADA 296
|
Length = 1061 |
| >gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Score = 68.5 bits (169), Expect = 5e-13
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TAC++ ++ A + ++ G+ D+ +AGG + + G ++ L+ P
Sbjct: 95 TACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGLSRAGMLS------PDGRC 148
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM--SGDAHHITQPHIDG 334
+ FD DG+V GEG GV+VL+ L A + G I A +RG + G ++ IT P
Sbjct: 149 KTFDASADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGITAPSGPA 207
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 298 |
| >gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 9e-12
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 41/152 (26%)
Query: 199 ASGHVSMKYGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
A+G ++ G GP ++ ACATG ++ A + +Q G +D+++AGG+E
Sbjct: 46 AAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE-------- 97
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRG 317
FV G+G+ V+E EHA +RGA AE+
Sbjct: 98 -----------------------------FVFGDGAAAAVVESEEHALRRGAHPQAEIVS 128
Query: 318 YGMSGD-AHHITQPHIDGKGAILAMTRALKQA 348
+ D A + G+G A +AL+ A
Sbjct: 129 TAATFDGASMVPAV--SGEGLARAARKALEGA 158
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. Length = 254 |
| >gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
C +G ++ AA+ I G++DV+VAGG ES +S A + +A G
Sbjct: 83 VCGSGLQAVALAAQSIAAGEADVVVAGGVES----MSRAPYLLPKARRGGRLGLNTLDGM 138
Query: 279 PFDCGRDGFV 288
D D F
Sbjct: 139 LDDGLTDPFT 148
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. Length = 386 |
| >gnl|CDD|235819 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 27/155 (17%)
Query: 173 DAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG-------FQGPNHAAVTACATGAH 225
D ++ E+ + L P L N+ +G++S+ + F G A V+A
Sbjct: 128 DRGVLLNERLMTELRPTLFLAQLSNLLAGNISIVHKVTGSSRTFMGEESAGVSAIEI--- 184
Query: 226 SIGDAARMIQFGDSDVMVAGGTES--SIDAL---SMAGFCKSRALTTKYNGTPQEASRPF 280
A I G SD + GG + D L + G K P +
Sbjct: 185 ----AFARIASGQSDHALVGGAYNAERPDMLLLYELGGLL------LKGGWAPVWSRGGE 234
Query: 281 DCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEV 315
D G GF++G G LVLE EHA+ RGA+ YA +
Sbjct: 235 DGG--GFILGSGGAFLVLESREHAEARGARPYARI 267
|
Length = 398 |
| >gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal domain | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 4e-05
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 312 YAEVRGYGMSGD-AHHITQPHIDGKGAILAMTRALKQA 348
YA +RG ++ D A H +G A+ AL A
Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADA 38
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 119 |
| >gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 9e-05
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G ++ AA+ I+ GD+D++VAGG ES
Sbjct: 88 CGSGLKAVALAAQAIRAGDADIVVAGGQES 117
|
Length = 393 |
| >gnl|CDD|235715 PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 15/98 (15%)
Query: 223 GAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282
GA ++ A R+I G ++ G +S + ++A + L T N
Sbjct: 136 GAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLTSQNS----------- 184
Query: 283 GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM 320
+GF+ GE + ++L + G + G G
Sbjct: 185 --NGFIPGEAAAAVLLGRPAGGEAPGLPLLG--LGLGR 218
|
Length = 348 |
| >gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 40 RVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITP 75
+VVVTGIG+V+ LG E +W+RL+ G+ GI+ P
Sbjct: 3 KVVVTGIGLVSALG-DLEQSWQRLLQGKSGIKLHQP 37
|
Length = 381 |
| >gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
CA+G ++ AA I+ G++DVM+A G ES
Sbjct: 95 CASGLQAVAMAADRIRVGEADVMIAAGVES 124
|
Length = 399 |
| >gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESS 250
CA+G ++ AA++I+ G++DV+VAGG ES
Sbjct: 82 QCASGLQAVILAAQLIRAGEADVVVAGGVESM 113
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatty acid oxidation [Fatty acid and phospholipid metabolism, Other]. Length = 386 |
| >gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 202 HVSMKYGFQGPNH-AAVT---ACATGAHSIGDAARMIQFGDSDVMVAGGTES 249
++K G P+ AVT C +G ++ AA+ I+ GD+D++VAGG ES
Sbjct: 66 QAALKAGI--PDSVPAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGGVES 115
|
Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase. Length = 262 |
| >gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 253
ACA+G ++ AA+ I G++DV++AGG E DA
Sbjct: 91 ACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDA 125
|
Length = 392 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| KOG1394 | 440 | consensus 3-oxoacyl-(acyl-carrier-protein) synthas | 100.0 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 100.0 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 100.0 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 100.0 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 100.0 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 100.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 100.0 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 100.0 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 100.0 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 100.0 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 100.0 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 100.0 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 100.0 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 100.0 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 100.0 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 100.0 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 100.0 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 99.95 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 99.93 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 99.79 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.72 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.71 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.68 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.68 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.67 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.67 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 99.67 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 99.66 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.66 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 99.66 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.66 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 99.65 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.65 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.65 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.65 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 99.64 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 99.63 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 99.62 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.62 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 99.62 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 99.61 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 99.6 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.6 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.6 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 99.59 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 99.59 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 99.58 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.58 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 99.58 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.58 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.58 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.57 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 99.56 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 99.56 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 99.56 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 99.56 | |
| KOG1390 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.55 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.55 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 99.54 | |
| PRK06158 | 384 | thiolase; Provisional | 99.54 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 99.54 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.54 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 99.52 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 99.52 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 99.52 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 99.52 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 99.51 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 99.51 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.5 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 99.5 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.48 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 99.48 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 99.47 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 99.46 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.43 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.41 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.4 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 99.39 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 99.37 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 99.36 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 99.36 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 99.35 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 99.32 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 99.31 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 99.26 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 99.25 | |
| PRK06840 | 339 | hypothetical protein; Validated | 99.23 | |
| KOG1391 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.19 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 99.19 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.18 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 99.17 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.17 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 99.17 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 99.15 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 99.14 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 99.12 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 99.11 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 99.1 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 99.09 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 99.08 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 99.05 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 99.04 | |
| KOG1389 | 435 | consensus 3-oxoacyl CoA thiolase [Lipid transport | 99.04 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 99.01 | |
| KOG1406 | 408 | consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 | 98.98 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 98.92 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 98.89 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 98.84 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 98.74 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 98.74 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 98.73 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 98.73 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 98.69 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 98.68 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 98.42 | |
| KOG1392 | 465 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 98.36 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 98.35 | |
| PF00195 | 226 | Chal_sti_synt_N: Chalcone and stilbene synthases, | 98.34 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 98.3 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 97.76 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 97.72 | |
| PF07451 | 329 | SpoVAD: Stage V sporulation protein AD (SpoVAD); I | 97.69 | |
| KOG1393 | 462 | consensus Hydroxymethylglutaryl-CoA synthase [Lipi | 95.25 |
| >KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-59 Score=414.42 Aligned_cols=290 Identities=58% Similarity=0.962 Sum_probs=278.3
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|+||||||||+++|+|++++++|++|.+|+++|+.+..++ ...+|..++|.|+. |+.+.|
T Consensus 23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d--------------~k~~p~~v~g~Ip~------f~~e~~ 82 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPD--------------YKSIPFTVAGKIPR------FSVEDY 82 (440)
T ss_pred ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccc--------------cccCcchheeeccc------cccccc
Confidence 7899999999999999999999999999999999998766 56788889999998 999989
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCC--CCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPS--DQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~--~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
+++...++|++..+|++.|+.+||+|+++.+. +..+..++||.+|++.++...+.+..+.+.+.++++++|+..|..+
T Consensus 83 ~s~~~~r~ms~~~~~al~aa~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil 162 (440)
T KOG1394|consen 83 VSKGDERRMSKFTKLALTAAEEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKIL 162 (440)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhh
Confidence 99999999999999999999999999999775 2225789999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCC
Q 018905 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (349)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (349)
.||.+++|++.+|++||+++++++|++|..+|..|++.|+.|+.|++|+||+|..++|..+.+|.+.++|+++ +++|+.
T Consensus 163 ~NM~ag~vsm~~gl~GpnhsvSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~~I~PlslaGF~r~RALSt~-nd~P~~ 241 (440)
T KOG1394|consen 163 TNMAAGYVSMKYGLRGPNHSVSTACATGNHCIGDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTR-NDNPQK 241 (440)
T ss_pred cccccchhhhhhcCcCCchhhHhhhhhccchHHHHHHHHHhCccceeeccCcceeecchhhhhHHHHHHhhhc-CCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 888999
Q ss_pred CCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 276 ~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.+||||.+++|||+|||++++|||+.|||++||++|||+|.|+|.++|.+||+.|+|+|.+...||++||++|
T Consensus 242 aSRPfD~~RdGFVmGEGagvlvlEelEHA~~RgA~I~AE~lGygls~Da~HiT~P~~dG~Ga~~am~raL~~A 314 (440)
T KOG1394|consen 242 ASRPFDKKRDGFVMGEGAGVLVLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALKDA 314 (440)
T ss_pred cCCCCccCCCceeeccceeEEehHhHHHHHHcCCceeHHhhcCcccccccccCCCCCCcchHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-51 Score=395.52 Aligned_cols=299 Identities=51% Similarity=0.864 Sum_probs=270.9
Q ss_pred CCCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCC-CC-CCCCC
Q 018905 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCG-IS-SGEFN 113 (349)
Q Consensus 36 ~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~-~~~fd 113 (349)
|+|++|+|||+|+++|.|.+.++||++|++|++++.+++.++ +..++..+++.+++- .+ ...||
T Consensus 1 m~~~~V~ItG~g~~~p~g~~~~~~w~~l~~G~s~i~~~~~~~--------------~~~~~~~~~g~i~~~~~~~~~~fd 66 (424)
T PRK06333 1 MNKKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFP--------------VGDLATKIGGQVPDLAEDAEAGFD 66 (424)
T ss_pred CCCCCEEEEcceEECCCCCCHHHHHHHHHcCCCeEEeCCccc--------------ccCCCCceEEEeccccccccccCC
Confidence 457899999999999999999999999999999999998876 334566778888741 00 12388
Q ss_pred CCCCCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhh
Q 018905 114 EDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR 193 (349)
Q Consensus 114 ~~~~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
+++|+++++.+.|+++++|++.++.+||+|+|+.+.++.+..++||++|++.+++....+.+..+...+...++|+.++.
T Consensus 67 ~~~~i~~~~~~~~d~~~~l~~~aa~~Al~dAgl~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (424)
T PRK06333 67 PDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPS 146 (424)
T ss_pred hhHcCCHHHHhhcCHHHHHHHHHHHHHHHhcCCCccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhh
Confidence 88889999999999999999999999999999987765347899999999999988888888877778888889999999
Q ss_pred hhhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCC
Q 018905 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (349)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (349)
.+.|.++++|+..||++||+++|+++|+|++.||..|+++|++|++|++||||+|..+++..+..|..++.++..+...|
T Consensus 147 ~~~~~~a~~is~~~gl~Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p 226 (424)
T PRK06333 147 FLTNMAAGHVSIRYGFKGPLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAP 226 (424)
T ss_pred hhhhHHHHHHHHHhCCCCCCccccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999889988888999998887666677
Q ss_pred CCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 274 ~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+..|+|||.+++|+++||||+++|||++++|+++|.++|++|.|++.++|+++++.|.+.+.++.++|++||++|
T Consensus 227 ~~~~~Pfd~~~~G~~~gEGaa~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~A 301 (424)
T PRK06333 227 EQASRPFDRDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALRQA 301 (424)
T ss_pred CcCCCCCCCCCCCeEEecceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHc
Confidence 889999999999999999999999999999999999999999999999999999999888999999999999976
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=393.11 Aligned_cols=289 Identities=48% Similarity=0.837 Sum_probs=264.2
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
.++|+|||+|+++|.|.+.++||++|++|++++++++.++ ...++.++++.+++ ||++.|
T Consensus 3 ~~~VvItG~g~~~p~g~~~~~~w~~L~~g~s~i~~~~~~~--------------~~~~~~~~~g~i~~------~~~~~~ 62 (414)
T PRK08722 3 KRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFD--------------TTNFSTRFAGLVKD------FNCEEY 62 (414)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHhCCCeeeecCccc--------------cccCCCceeEEcCC------CChhHc
Confidence 3689999999999999999999999999999999886543 23456678889986 898888
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
++++..+.|++++++++.++.+||+|||+..... +..++||++|++.++....+..+..+.+.++..++|+.++..+.|
T Consensus 63 ~~~~~~~~~d~~~~~~l~a~~~Al~dAGl~~~~~-~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 141 (414)
T PRK08722 63 MSKKDARKMDLFIQYGIAAGIQALDDSGLEVTEE-NAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVN 141 (414)
T ss_pred CCHHHHhhcCHHHHHHHHHHHHHHHHcCCCcccc-CCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhccccccc
Confidence 8889999999999999999999999999976555 378999999999999888888888787777888899999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.++++|+..||++||+++|+++|+|++.||..|+++|++|++|++||||+|...++..+..|..++.++.. .+.|+..|
T Consensus 142 ~~a~~is~~~gl~Gp~~ti~~aCas~~~Al~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~-~~~p~~~~ 220 (414)
T PRK08722 142 MIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKAS 220 (414)
T ss_pred HHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHcCCcccC-CCCCcccc
Confidence 99999999999999999999999999999999999999999999999999998899999999999988742 34567899
Q ss_pred CCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+|||.+++|+++|||++++|||++++|+++|.++|++|.|++.++|+.|++.|++.+++..++|++||++|
T Consensus 221 rpfd~~~~G~~~gEGaaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~a 291 (414)
T PRK08722 221 RPWDKDRDGFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDA 291 (414)
T ss_pred CcCcCCCCceEeeceEEEEEEccHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCcchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999876
|
|
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=401.14 Aligned_cols=289 Identities=42% Similarity=0.719 Sum_probs=259.3
Q ss_pred CCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
++++|+|||||+++|.|.+.++||++|.+|++++.+++.++ ...++.++++.+++ |+.+.
T Consensus 127 ~~~rVvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~f~--------------~~~~~~~~ag~i~~------f~~~~ 186 (540)
T PLN02787 127 KQRRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFD--------------CSQFPTRIAGEIKS------FSTDG 186 (540)
T ss_pred CCCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcccccCccc--------------hhhCCccccccccc------cChhh
Confidence 35699999999999999999999999999999999887543 23456677788876 88777
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHCCCCCC---CCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhh
Q 018905 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPS---DQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR 193 (349)
Q Consensus 117 ~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~---~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
+++++..++|++.+++++.++++||+|||+.++ ++ +..++||++|+..++...+.+.+..+. .....++|+.++.
T Consensus 187 ~l~~k~~r~md~~~~~al~Aa~eAL~dAGl~~~~~~~~-~~~r~GV~vGt~~g~~~~~~~~~~~l~-~~~~~~~p~~~~~ 264 (540)
T PLN02787 187 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMKEL-DKTKCGVLIGSAMGGMKVFNDAIEALR-ISYRKMNPFCVPF 264 (540)
T ss_pred cCCHHHHHhCCHHHHHHHHHHHHHHHHcCCCccccccc-CCCceEEEEEeccchHHHHHHHHHHHh-hccccCCcchhhh
Confidence 889999999999999999999999999999753 33 378999999999988877666665543 4556788888898
Q ss_pred hhhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCC
Q 018905 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (349)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (349)
.+.|+.+++|+..||++||+++|+++|+|++.||..|+++|+.|++|++||||+|..+++..+..|..++.++.. ++.|
T Consensus 265 ~~~n~~a~~ia~~~gl~Gp~~tistACASs~~Ai~~A~~~Ir~G~aD~aLvGG~d~~l~p~~~~~f~~~~aLS~~-~~~p 343 (540)
T PLN02787 265 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQR-NDDP 343 (540)
T ss_pred hcccHHHHHHHHHhCCCCCccccccccccHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHHHHHHhhcc-CCCc
Confidence 899999999999999999999999999999999999999999999999999999998899999999999998853 4457
Q ss_pred CCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 274 ~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+..|+|||.+++|+++||||+++|||++++|+++|++|||+|+|++.++|++|++.|+++++++.++|++||++|
T Consensus 344 ~~~~rPFD~~rdGfv~GEGAa~lVLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p~p~g~g~~~am~~AL~~A 418 (540)
T PLN02787 344 TKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQS 418 (540)
T ss_pred ccccCCcccCCCCcccccceEEEEEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCCCcCHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999986
|
|
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-51 Score=384.70 Aligned_cols=288 Identities=51% Similarity=0.822 Sum_probs=261.7
Q ss_pred CCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
++++|+|||+|+++|.|.+.+++|++|..|++++..++.++ ...+..++.+.++. | ..
T Consensus 1 ~~~rvviTG~g~vs~lG~~~~~~~~~l~~g~sgi~~~~~~~--------------~~~~~~~~~~~i~~------~--~~ 58 (412)
T COG0304 1 SMRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFD--------------ASGLGVKIAGEIKD------L--DD 58 (412)
T ss_pred CCceEEEecceeeecccCCHHHHHHHHhcCCCCCCcccccc--------------ccCCCCcccccccc------c--cc
Confidence 47899999999999999999999999999999999888765 34556677788876 4 34
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCC-CCCcchhhhh
Q 018905 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRR-LSPFFIPRIL 195 (349)
Q Consensus 117 ~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 195 (349)
++.+++.++|++..+|++.++.+||+|||+......+. |+|+++|++.++...++.....+...+.+. ++|+.++..+
T Consensus 59 ~~~~~~~~~~d~~~~~a~~Aa~eAl~dAgl~~~~~~~~-r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 137 (412)
T COG0304 59 QIAKKERRFMDRFSQLAVVAAVEALEDAGLDNELNVDM-RVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKML 137 (412)
T ss_pred ccchHHhhcccHHHHHHHHHHHHHHHHcCCCcccccCc-cEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhc
Confidence 46777778999999999999999999999983322223 999999999999988876555555555555 8999999999
Q ss_pred hhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCC
Q 018905 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (349)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (349)
+|+.++.++..||++||++++.++|+|+..||..|+++|+.|++|++||||+|..+++..+.+|..++++++. +++|..
T Consensus 138 ~~~~a~~vs~~~g~~G~~~~~~tACatg~~AIg~A~~~I~~G~ad~~iaGG~e~~i~~~~i~gF~am~Alst~-nd~p~~ 216 (412)
T COG0304 138 PNLAAGNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTR-NDDPEK 216 (412)
T ss_pred cchHHHHHHHHhCCCCCcCChhhhHHhHHHHHHHHHHHHHcCCCCEEEEcccccccCHHHHHHHHHHHHhccC-CCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 888999
Q ss_pred CCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 276 ~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.|||||++++||++|||++++|||+.|+|++||.+||++|.|++.++|++|++.|.|+|.+..+||++||++|
T Consensus 217 asrPfd~~RdGfv~gEGag~lVLE~~ehA~aRGA~Iyaei~G~g~~~Da~h~t~P~p~g~Ga~~am~~AL~~A 289 (412)
T COG0304 217 ASRPFDKNRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADA 289 (412)
T ss_pred cCCCCCCCCCCEEEecceeEEEecChhhHHhCCCceEEEEEEEEecccccccCCCCCCCchHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976
|
|
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=389.19 Aligned_cols=308 Identities=79% Similarity=1.276 Sum_probs=268.2
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
.++|+|||||+++|.|.+.++||++|++|++++++++.++|..+.|+.+........++.++++.++.......||+..|
T Consensus 5 ~~~VvItG~g~~~p~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~ 84 (437)
T PLN02836 5 TRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSRVAALVPRGTGPGDFDEELW 84 (437)
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCChhhhccccccccccccccccCCccEEEEeccccccccCChHHh
Confidence 67899999999999999999999999999999999999887655443221111123567788888864333456887776
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
+. .+++++..++++.++.+||+|||+.+.+..+.+++||++|++.+...+..+....+.+.+.+.++|+.++..+.|
T Consensus 85 ~~---~~~~~~~~~~~~~aa~~Al~dAg~~~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n 161 (437)
T PLN02836 85 LN---SRSSSRFIGYALCAADEALSDARWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILIN 161 (437)
T ss_pred cc---ccccCHHHHHHHHHHHHHHHHcCCCcccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhhccc
Confidence 33 457899999999999999999999764322367999999999888888777777777777778899999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
+++++|+..||++||+++|+++|+|++.||..|+++|++|++|++||||+|...++..+..|..++.++..+...++..+
T Consensus 162 ~~a~~is~~~gl~Gp~~tv~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~ 241 (437)
T PLN02836 162 MAAGHVSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTEAS 241 (437)
T ss_pred HHHHHHHHHhCCCCceeceeChhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHHhhhhhcccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999998899888899999888866566677899
Q ss_pred CCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+|||.+++|+++||||+++||+++++|+++|.++|++|.|++.++|+.+++.|++.+++..++|++||++|
T Consensus 242 ~pfd~~~~G~~~gEGaaalVLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~A 312 (437)
T PLN02836 242 RPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRGAVLAMTRALQQS 312 (437)
T ss_pred CCcccCCCCeeeecCEEEEEEeeHHHHHHCCCceEEEEEeeeecCCCCCCcCCCcchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999988899999999999986
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-50 Score=381.32 Aligned_cols=285 Identities=37% Similarity=0.579 Sum_probs=251.8
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|++|+|||+|+++|.|.+.++||++|++|+++|+++++++ ...++.++++.++ |++..+
T Consensus 1 m~rVvITG~G~vsp~G~~~~~~w~~l~~G~sgi~~~~~~~--------------~~~~~~~~~g~~~-------~~~~~~ 59 (406)
T PRK07967 1 MRRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFA--------------EMGMRSQVWGNVK-------LDPTGL 59 (406)
T ss_pred CCcEEEEcceEECCCCCCHHHHHHHHHcCCCceeECCccc--------------ccCCCCceEEEcC-------CChhhc
Confidence 3789999999999999999999999999999999987754 3356677777764 777666
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHH-hccCCCCCcchhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICE-KRLRRLSPFFIPRILI 196 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 196 (349)
++++..+++++..++++.++.+||+|||+..++.. ..++||++|++.+........+..+.. .+.+.++|+.++..+.
T Consensus 60 ~~~~~~~~~~r~~~~a~~aa~~Al~dAGl~~~~~~-~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 138 (406)
T PRK07967 60 IDRKVMRFMGDASAYAYLAMEQAIADAGLSEEQVS-NPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMA 138 (406)
T ss_pred CCHHHhhcCCHHHHHHHHHHHHHHHHcCCCCccCC-CCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhccccc
Confidence 77788899999999999999999999999876553 789999999988877666555555554 5667789999999999
Q ss_pred hHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCC
Q 018905 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (349)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (349)
|.++++|+..|+++||+++|+++|+|++.||..|+++|++|++|++||||+|. ..+.....|..++.++..++..|+..
T Consensus 139 ~~~a~~is~~~~l~Gp~~tvs~aCas~~~Ai~~A~~~ir~G~~d~~lvgg~d~-~~~~~~~~f~~~~~ls~~~~~~p~~~ 217 (406)
T PRK07967 139 STVSACLATPFKIKGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LDWEMSCLFDAMGALSTKYNDTPEKA 217 (406)
T ss_pred chHHHHHHHHHCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeeecc-cChHHHHHHHHhhhhccCCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999997 55555667888898886555667889
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 347 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~ 347 (349)
|+|||.+++|+++||||+++|||++++|+++|++||++|.|++.++|++|++.| ++.++.++|++||+.
T Consensus 218 ~rPFd~~r~G~v~gEGaa~lvLe~~~~A~~rga~i~a~i~G~g~~~d~~~~~~p--~~~~~~~a~~~Al~~ 286 (406)
T PRK07967 218 SRAYDANRDGFVIAGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP--SGEGAVRCMQMALAT 286 (406)
T ss_pred CcCCcCCCCceeeeceEEEEEEeeHHHHHhCCCcEEEEEEEEEECCCCCCCCCC--CHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999877 477889999999975
|
|
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=377.73 Aligned_cols=289 Identities=56% Similarity=0.927 Sum_probs=265.6
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|++|+|||+|+++|.|.+.++||++|++|++++++++.++ ...++..+++.+++ ||++.+
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~--------------~~~~~~~~~g~i~~------f~~~~~ 60 (411)
T PRK07314 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFD--------------TSDLAVKIAGEVKD------FNPDDY 60 (411)
T ss_pred CCcEEEEcceEECCCcCCHHHHHHHHHhCCCcEEECCccc--------------ccCCCccEEEEeCC------cChhhc
Confidence 4789999999999999999999999999999999987644 23456677899987 998888
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
+++++.++|+|+++|++.++.+||+|||+++.+++ ..++||++|++.++.....+.+..+...++..+.|+.+++.+.|
T Consensus 61 ~~~~~~~~~~~~~~l~~~aa~~Al~dAGl~~~~~~-~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (411)
T PRK07314 61 MSRKEARRMDRFIQYGIAAAKQAVEDAGLEITEEN-ADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIIN 139 (411)
T ss_pred CCHHHhhcCCHHHHHHHHHHHHHHHHcCCCcccCC-cccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcch
Confidence 99999999999999999999999999999988774 88999999999999988888888888888888889999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
..+++|+..||++||+++|+++|+|++.||..|+++|++|++|++||||+|...++..+..|..++.++.. ..+|+..+
T Consensus 140 ~~a~~is~~~gl~Gp~~tv~~acaSgl~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~ls~~-~~~p~~~~ 218 (411)
T PRK07314 140 MAAGHVSIRYGAKGPNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTR-NDDPERAS 218 (411)
T ss_pred HHHHHHHHHhCCCCccccchhhhHHHHHHHHHHHHHHhcCCCCEEEEeeecccCCHHHHHHHHHhccccCC-CCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999998889888889888888743 34566789
Q ss_pred CCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+|||.+++|+++||||+++||+++++|+++|.++|++|+|++.++|+.+++.|++.+.++..++++||++|
T Consensus 219 ~pfd~~~dG~~~geGAaavvL~~~~~A~~~g~~~~a~I~g~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~a 289 (411)
T PRK07314 219 RPFDKDRDGFVMGEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDA 289 (411)
T ss_pred CCCcCCCCCEeEEceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999888888899999999976
|
|
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=376.97 Aligned_cols=287 Identities=46% Similarity=0.783 Sum_probs=261.9
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|++|+|||+|+++|.|.+.++||++|++|+++|.+++++. ...++..+++.+++ ||+..+
T Consensus 1 m~~v~ItG~g~vsp~G~~~~~~~~~L~~G~s~i~~~~~~~--------------~~~~~~~~~g~i~~------f~~~~~ 60 (406)
T PRK08439 1 MKRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFD--------------ASDFPVQIAGEITD------FDPTEV 60 (406)
T ss_pred CCCEEEEeeEEECCCcCCHHHHHHHHHcCCCceEeCCCcc--------------ccCCCCceeEEcCC------cChhhc
Confidence 4789999999999999999999999999999999887643 33456677888876 998888
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
++++..+++++..+|++.++.+||+|||+.+.+++ ..++|+++|++.++....+.....+...+++.++|+.++..+.|
T Consensus 61 ~~~~~~~~~~~~~~l~~~Aa~~AL~dAGl~~~~~~-~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (406)
T PRK08439 61 MDPKEVKKADRFIQLGLKAAREAMKDAGFLPEELD-AERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVN 139 (406)
T ss_pred CCHHHHhhcCHHHHHHHHHHHHHHHHcCCCcccCC-CCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhccccccc
Confidence 88899999999999999999999999999887764 88999999999999888887777777778888999999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.++++|+..||++||++++.++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|..++.++.. ...|+..|
T Consensus 140 ~~a~~is~~~gl~Gp~~~~~~acas~~~Al~~A~~~i~~G~~d~~lv~g~d~~l~~~~~~~f~~~~~ls~~-~~~p~~~~ 218 (406)
T PRK08439 140 MLGGFISIEHGLKGPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTR-NDDPKKAS 218 (406)
T ss_pred HHHHHHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecchhccCHHHHHHHHHhCccccC-CCCCccCc
Confidence 99999999999999999999999999999999999999999999999999998999999999999988853 34467889
Q ss_pred CCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+|||.+++|+++|||++++|||++++|+++|.++|++|.|++.++|+++++.|++ .++.++|++||++|
T Consensus 219 rpfd~~~~G~v~gEGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~p~~--~~~~~a~~~al~~a 287 (406)
T PRK08439 219 RPFDKDRDGFVMGEGAGALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAP--EGPLRAMKAALEMA 287 (406)
T ss_pred CCccCCCCcEEeeCceEEEEEccHHHHHHCCCeEEEEEEeEEccCCCCCCCCCCH--HHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999887 56689999999875
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=372.75 Aligned_cols=283 Identities=31% Similarity=0.468 Sum_probs=253.8
Q ss_pred CceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCC
Q 018905 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (349)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i 118 (349)
++|+|||+|+++|.|.+.++||++|.+|++++++++.++ ...++.++++.+++ ||..+++
T Consensus 1 ~~VvItG~G~vsp~G~~~~~~w~~L~~G~s~i~~~~~~~--------------~~~~~~~~~g~i~~------~~~~~~~ 60 (399)
T cd00832 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFD--------------PSGYPARLAGEVPD------FDAAEHL 60 (399)
T ss_pred CCEEEEeeEEeCCCCCCHHHHHHHHHhCCCeEeeCCccc--------------cccCCCceeEEeCC------cChhhcC
Confidence 479999999999999999999999999999999876532 22345667888876 8877778
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhH
Q 018905 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
+++..++++++++|++.++.+||+|||+.+..++ ..++||++|++.+++...+..+..+...++..+.++.++..+.+.
T Consensus 61 ~~~~~~~~d~~~~~~l~aa~eAl~dAGl~~~~~~-~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (399)
T cd00832 61 PGRLLPQTDRMTRLALAAADWALADAGVDPAALP-PYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAV 139 (399)
T ss_pred CHHHHhhCCHHHHHHHHHHHHHHHHcCCCccccC-CCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhH
Confidence 9999999999999999999999999999876653 789999999999998877777777777777788888888889999
Q ss_pred HHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
.+++|+..||++||+++|+++|+|++.||.+|+++|++|+ |++||||+|..+++..+..|..++.++. ...|...|+
T Consensus 140 ~a~~is~~~gl~Gp~~ti~~acaS~~~Al~~A~~~i~~G~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~--~~~p~~~~r 216 (399)
T cd00832 140 NTGQISIRHGMRGPSGVVVAEQAGGLDALAQARRLVRRGT-PLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYL 216 (399)
T ss_pred HHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCC-CeEEEEeeccccCHHHHHHHHhccccCC--CCCCCCCcC
Confidence 9999999999999999999999999999999999999999 9999999999999999999999998874 334667999
Q ss_pred CCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|||.+++|+++|||++++|||++++|+++|.+||++|.|++.++|+.+... .+.++.++|++||++|
T Consensus 217 PFd~~~~G~~~gEGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~---~~~~~~~a~~~al~~a 283 (399)
T cd00832 217 PFDAAAAGYVPGEGGAILVLEDAAAARERGARVYGEIAGYAATFDPPPGSG---RPPGLARAIRLALADA 283 (399)
T ss_pred CCcCCCCCEeeeceEEEEEEeeHHHHHHCCCeEEEEEEeEEEcCCCCCCCC---CHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999987642 3778899999999875
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=374.14 Aligned_cols=287 Identities=37% Similarity=0.548 Sum_probs=252.6
Q ss_pred CceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCC
Q 018905 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (349)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i 118 (349)
++|||||+|+++|.|.+.++||++|.+|+++|++++.+++ ...++.++++.+++ |+...++
T Consensus 2 ~~VvITG~g~vtp~G~~~~~~~~~L~~g~s~i~~~~~~~~-------------~~~~~~~~~~~v~~------~~~~~~~ 62 (405)
T PRK09116 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDR-------------YDGLNTRLAAPIDD------FELPAHY 62 (405)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCCEEeCCchhh-------------ccCCCCceEEEecC------cChhHhc
Confidence 7899999999999999999999999999999999986431 12456788899886 7777778
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhH
Q 018905 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
+++..++|++.++|++.++.+||+|||+......+.+++||++|++.+..+....+...+.+.+...+++..++..++|.
T Consensus 63 ~~~~~r~~~~~~~~al~aa~~Al~dAGl~~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 142 (405)
T PRK09116 63 TRKKIRSMGRVSLMATRASELALEDAGLLGDPILTDGRMGIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHT 142 (405)
T ss_pred CHHHHhhCCHHHHHHHHHHHHHHHHcCCCCccccCCCcEEEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccH
Confidence 88888999999999999999999999995432223679999999999988887777777777777778888899999999
Q ss_pred HHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
++++|+..|+++||+++|+++|+|++.||..|+++|++|++|++||||+|. .++.....|..++.++.. ...|...|+
T Consensus 143 ~a~~is~~~~~~Gp~~ti~~acas~~~Al~~A~~~I~~G~~d~~lvgg~d~-~~~~~~~~f~~l~~~~~~-~~~~~~~~r 220 (405)
T PRK09116 143 TAVNVGLFFGLKGRVIPTSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVFDTLFATSTR-NDAPELTPR 220 (405)
T ss_pred HHHHHHHHhCCCCCcccccchhhhHHHHHHHHHHHHHcCCCCEEEEecchh-cChHHHHHHHHhhhhccC-CCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999998 677777778888776532 234667899
Q ss_pred CCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|||.+++|+++|||++++|||++++|+++|.+||++|.|++.++|+.|++.|+ +.++.++|++||++|
T Consensus 221 Pfd~~~~G~v~gEGa~~~vLe~~~~A~~rga~i~a~i~g~~~~~d~~~~~~p~--~~~~~~ai~~AL~~A 288 (405)
T PRK09116 221 PFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQ--AETMQIAMELALKDA 288 (405)
T ss_pred CCcCCCCCEeeeccEEEEEEccHHHHHhCCCceEEEEEEEEEcCCCCcCCCCC--HHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988775 456789999999875
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=370.14 Aligned_cols=288 Identities=35% Similarity=0.538 Sum_probs=257.2
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|++|+|||+|+++|.|.+.++||++|++|++++++++..++. ...++.++++.++. .||+ +
T Consensus 11 ~~~VvItGig~~sp~g~~~~~~w~~L~~G~s~i~~~~~~~~~------------~~~~~~~~~g~i~~-----~~d~--~ 71 (418)
T PRK07910 11 FPNVVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVE------------EFDLPVRIGGHLLE-----EFDH--Q 71 (418)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeeEeCChhhhh------------ccCCCcceEEEecc-----Cccc--c
Confidence 579999999999999999999999999999999988764321 11345667888752 2654 3
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
+++++.++|+|.+++++.++++||+|||+.. . +..++||++|++.++.......+..+.+.+++.++++.++..+.|
T Consensus 72 ~~~~~~~~~d~~~~~~l~aa~~AledAg~~~--~-~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 148 (418)
T PRK07910 72 LTRVELRRMSYLQRMSTVLGRRVWENAGSPE--V-DTNRLMVSIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPN 148 (418)
T ss_pred CCHHHHhhccHHHHHHHHHHHHHHHHcCCCC--C-CcccEEEEEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccc
Confidence 7888899999999999999999999999853 3 378999999999999888888888787778888889999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccc-cccccCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRA-LTTKYNGTPQEA 276 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 276 (349)
.++.+++..++++||+++|+++|+|++.||++|+++|++|++|++||||+|..+++..+..|..++. ++.. .+.+++.
T Consensus 149 ~~a~~is~~~~~~G~~~ti~taCaS~~~Al~~A~~~I~~G~~d~aivgg~~~~~~~~~~~~f~~~~~~ls~~-~~~~~~~ 227 (418)
T PRK07910 149 GPAAAVGLERHAKAGVITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTN-NDDPAGA 227 (418)
T ss_pred cHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCccccC-CCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999889999999999998 6631 3447789
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+|||.+++|+++|||++++|||++++|+++|.+||++|.|++.++|+++++.|++.+.++.++|++||++|
T Consensus 228 ~rPFd~~~~G~v~gEGaa~vvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~Al~~a 299 (418)
T PRK07910 228 CRPFDKDRDGFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELA 299 (418)
T ss_pred cCCCcCCCCCEeeeceEEEEEEeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
|
|
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-47 Score=364.40 Aligned_cols=288 Identities=56% Similarity=0.909 Sum_probs=263.0
Q ss_pred CceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCC
Q 018905 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (349)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i 118 (349)
++|+|||+|+++|.|.+.++||++|++|++++.+++.++ ....+..+++.+++ ||++.|+
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~--------------~~~~~~~~~g~i~~------f~~~~~~ 60 (407)
T TIGR03150 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFD--------------ASDLPVKIAGEVKD------FDPEDYI 60 (407)
T ss_pred CcEEEEcceEECCCcCCHHHHHHHHHcCCCeeEECCccc--------------ccCCCCcEEEEeCC------cChhhcC
Confidence 479999999999999999999999999999999987644 33456678899987 9998889
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhH
Q 018905 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
++++.++|+++++|++.++.+||+|||+++++++ ..++|+++|++.++....+..+..+.+.++..++|+.+++.+.|.
T Consensus 61 ~~~~~~~~~~~~~l~~~aa~~Al~dAgl~~~~~~-~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (407)
T TIGR03150 61 DKKEARRMDRFIQYALAAAKEAVEDSGLDIEEED-AERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINM 139 (407)
T ss_pred CHHHHhhcCHHHHHHHHHHHHHHHhcCCCcccCC-ccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccH
Confidence 9999999999999999999999999999988875 889999999999998888888888888888888999999999999
Q ss_pred HHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
++++|+..||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|.+.++.....|..++.++. ++..+...++
T Consensus 140 ~a~~is~~~gl~g~~~~v~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~e~~~~~~~~~~~~~~~~ls~-~~~~~~~~~~ 218 (407)
T TIGR03150 140 AAGQISIRYGAKGPNHAVVTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALST-RNDDPEKASR 218 (407)
T ss_pred HHHHHHHHhCCCCcccccccHHHHHHHHHHHHHHHHhcCCCCEEEEecccCcCCHHHHHHHHHhCcccC-CCCCCCcCCC
Confidence 999999999999999999999999999999999999999999999999999888988888888887763 2344567899
Q ss_pred CCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
||+.+++|+++||||+++||+++++|+++|.++|++|.|++.++|+.+++.|.+.+.++.+++++||++|
T Consensus 219 pfd~~~~g~~~gEGAaalvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~A 288 (407)
T TIGR03150 219 PFDKDRDGFVMGEGAGVLVLEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDA 288 (407)
T ss_pred CCcCCCCcEEEeceEEEEEEeeHHHHHHCCCeEEEEEEEEEECCCCCCCCCCCCCcHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999998888888888999999999986
|
FabB sequences should fall well below the noise cutoff of this model. |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=418.71 Aligned_cols=295 Identities=24% Similarity=0.383 Sum_probs=253.4
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCC-cchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNF-DRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
.++|+||||||++|++.+.++||++|.+|+++|++++..+|+.+.| +++... ....+++.+|++++ .+||+.+
T Consensus 6 ~~~IAIvGmg~~~P~a~~~~~fW~~L~~G~~~i~~ip~~rw~~~~~~~~~~~~--~~~~~~~~ggfl~~----v~FD~~~ 79 (2582)
T TIGR02813 6 DMPIAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSE--ADKSYCKRGGFLPE----VDFNPME 79 (2582)
T ss_pred CCCEEEEeeeeeCCCCCCHHHHHHHHHcCCCccCCCChhhCChhhccCccccc--cCCcccceeEecCc----cCCCHhh
Confidence 3569999999999999999999999999999999999999977654 444321 34567888999985 3499999
Q ss_pred C-CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHH---H------------------H
Q 018905 117 W-LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTV---D------------------A 174 (349)
Q Consensus 117 ~-i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~---~------------------~ 174 (349)
| |++++.+.|||+++|+++++++||+|||+... . +.+++|||+|++.+...... . .
T Consensus 80 F~i~p~ea~~mDpqqrl~L~~a~eALedAG~~~~-~-~~~r~GV~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (2582)
T TIGR02813 80 FGLPPNILELTDISQLLSLVVAKEVLNDAGLPDG-Y-DRDKIGITLGVGGGQKQSSSLNARLQYPVLKKVFKASGVEDED 157 (2582)
T ss_pred cCCCHHHHHhcCHHHHHHHHHHHHHHHhCCCCCC-C-CCCCEEEEEEECCCcccchhhhhhhcchhhhhhhhccccchhh
Confidence 9 99999999999999999999999999999654 4 48899999999766432100 0 0
Q ss_pred HHHHH---HhccCCCCCcchhhhhhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 175 AQMIC---EKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 175 ~~~~~---~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
...+. ...+..+.+..+++.+.|+++++|++.|||+||+++|+++|+||+.||++|+++|++|+||++||||++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~n~~A~RIS~~f~L~Gps~tVdtACsSSL~Al~~A~~~L~~G~~D~alvGGv~~~~ 237 (2582)
T TIGR02813 158 SEMLIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDN 237 (2582)
T ss_pred HHHhhhhhcccccccCccccccccccHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecceeeC
Confidence 11111 111223566778999999999999999999999999999999999999999999999999999999999989
Q ss_pred ChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCC--CCCC
Q 018905 252 DALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH--HITQ 329 (349)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~--~~~~ 329 (349)
++..+..|..++.++ +++.|+|||.+++|+++|||++++||++.++|+++|++|||+|+|++.++||+ ++++
T Consensus 238 ~p~~~~~fs~~~~lS------~~g~crpFD~~adG~v~GEGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~DG~~~~ita 311 (2582)
T TIGR02813 238 SPFMYMSFSKTPAFT------TNEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYA 311 (2582)
T ss_pred CHHHHHHHHhccCcC------CCCCccCCCCCCCcccccceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcCCCCCCCCcC
Confidence 999999999999998 66889999999999999999999999999999999999999999999999997 6777
Q ss_pred CCCCcHHHHHHHHHHHHHh
Q 018905 330 PHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 330 p~~~g~~~~~a~~~Al~~A 348 (349)
|++.+ +.++|++||++|
T Consensus 312 P~~~g--q~~~i~~Al~~A 328 (2582)
T TIGR02813 312 PRPEG--QAKALKRAYDDA 328 (2582)
T ss_pred CCHHH--HHHHHHHHHHHc
Confidence 77654 589999999876
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=354.32 Aligned_cols=293 Identities=27% Similarity=0.395 Sum_probs=245.5
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|++|||||||+++|.|.+.++||++|++|++++++++.+++..... . ........+++++++ |+...+
T Consensus 1 m~~VvItG~g~vsp~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~------~~~~~~ 68 (410)
T PRK07103 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDD----A--GAGLASAFIGAELDS------LALPER 68 (410)
T ss_pred CCCEEEEcceEECCCcCCHHHHHHHHHcCCCeEecCCccccccccc----c--cccCCCceEEEEeCC------CChhhc
Confidence 4789999999999999999999999999999999998754210000 0 011234567888886 666666
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
++++..+++++..+|++.++.+||+|||+.+ . +..++||++|++.+........+..+ ..+...+.|.+....+++
T Consensus 69 ~~~~~~r~~~~~~~lal~Aa~eAl~dAgl~~--~-~~~riGvivG~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~ 144 (410)
T PRK07103 69 LDAKLLRRASLSAQAALAAAREAWRDAALGP--V-DPDRIGLVVGGSNLQQREQALVHETY-RDRPAFLRPSYGLSFMDT 144 (410)
T ss_pred CCHHHhhcCCHHHHHHHHHHHHHHHhcCcCC--C-CCCCEEEEEccCCcchHHHHHHHHHh-ccCccccChhhhhhhcch
Confidence 7888889999999999999999999999953 2 37899999998776665555544443 234455677777788888
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccc-cCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-YNGTPQEA 276 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 276 (349)
.++++|+..||++||+++|+++|+|++.||+.|+++|++|++|++||+|++...++.....|..++.++.. +..+|...
T Consensus 145 ~~a~~ia~~lgl~G~~~tv~~acas~~~Al~~A~~~I~~G~~d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 224 (410)
T PRK07103 145 DLVGLCSEQFGIRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAA 224 (410)
T ss_pred HHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHccccccCccCCCcccC
Confidence 99999999999999999999999999999999999999999999999999877889988999988887642 34457789
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+|||.+++|+++|||++++|||++++|+++|.++|++|.|++.++|+.+++.|+ ..++.++|++||++|
T Consensus 225 ~rPfd~~~dG~v~gEGaaalvLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~--~~~~~~a~~~Al~~A 294 (410)
T PRK07103 225 CRPFDQDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPS--LEGEMRVIRAALRRA 294 (410)
T ss_pred cCCCCCCCCCeeEeeeEEEEEEccHHHHHHCCCceEEEEEEEEEecCCCCCCCCC--HHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999877665 456689999999875
|
|
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-45 Score=350.19 Aligned_cols=288 Identities=54% Similarity=0.885 Sum_probs=263.9
Q ss_pred CceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCC
Q 018905 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (349)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i 118 (349)
++|+|||+|+++|.|.+.++||++|++|++++++++.++ +..++..+++.++. |+..+++
T Consensus 1 ~~i~I~G~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~--------------~~~~~~~~~~~i~~------~~~~~~~ 60 (406)
T cd00834 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFD--------------ASGFPSRIAGEVPD------FDPEDYL 60 (406)
T ss_pred CcEEEECcceeCCCcCCHHHHHHHHHcCCCeeEECCccc--------------ccCCCccEEEEcCC------CChhhcC
Confidence 379999999999999999999999999999999988755 33556778899987 7777669
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhH
Q 018905 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
+++..+.++++++|++.++.+||+|||+++.+++ ..++|+++|++.++....+.++..+...++..++|+.+++.+.+.
T Consensus 61 ~~~~~~~~~~~~~l~~~aa~~AL~dAgl~~~~~~-~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (406)
T cd00834 61 DRKELRRMDRFAQFALAAAEEALADAGLDPEELD-PERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNM 139 (406)
T ss_pred CHHHhccCCHHHHHHHHHHHHHHHHcCCCcccCC-ccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccH
Confidence 9999999999999999999999999999988774 899999999999999999999998888888889999999999999
Q ss_pred HHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
++++|+..||++||+++|+++|+|++.||..|+++|++|++|.+||+|+|...++..+..|..++.++... ..|+..++
T Consensus 140 ~a~~ia~~lgl~g~~~~v~~acas~~~Al~~A~~~i~~G~~d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~-~~p~~~~~ 218 (406)
T cd00834 140 AAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRN-DDPEKASR 218 (406)
T ss_pred HHHHHHHHhCCCCcccccchHHHHHHHHHHHHHHHHHcCCCCEEEEcCcccccCHHHHHHHHhcCCcCCCC-CCCccCCC
Confidence 99999999999999999999999999999999999999999999999999977899999999998887531 22556899
Q ss_pred CCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
||+.+++|+++||||+++||++.++|+++|.++|++|.|++.++|+.+++.|++.+.++.+++++||++|
T Consensus 219 pf~~~~~g~~~geGA~a~vL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~a 288 (406)
T cd00834 219 PFDKDRDGFVLGEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADA 288 (406)
T ss_pred CCCCCCCCEeeeccEEEEEEecHHHHHHCCCeEEEEEEEEEecccCCCCCCCCCCcHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999998888888889999999999875
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=347.16 Aligned_cols=292 Identities=52% Similarity=0.838 Sum_probs=254.4
Q ss_pred eeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccc--cCCCcceEEEEecCCCCCCCCCCCCCCCchhhhc
Q 018905 48 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHA--FGQLTSKVAAVVPCGISSGEFNEDSWLNSKDHRS 125 (349)
Q Consensus 48 ~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~fd~~~~i~~~~~~~ 125 (349)
+++|.|.+.++||++|++|++++++++.++|....+++.....+ ...++++++++|+. ..||+..|.. ..+
T Consensus 1 ~vs~~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~----~~f~~~~~~~---~~~ 73 (421)
T PTZ00050 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQ----SEFDPSDFAP---TKR 73 (421)
T ss_pred CCCCCcCCHHHHHHHHHcCCCeeecCCchhhcccccccccccccccccCCCCceEEECCc----ccCChhHcCC---ccc
Confidence 47999999999999999999999999988765544432111000 23567788999874 3488776632 124
Q ss_pred cCHHHHHHHHHHHHHHHHCCCC-CCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHH
Q 018905 126 IARFIAYALCAADEALHDAKWL-PSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (349)
Q Consensus 126 ~~~~~~l~~~a~~~Al~dAgi~-~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (349)
.++.++|++.++.+||+|||+. +.+++ ..++|+++|++.++.......+..+...+...++++.+++.+.|.++++|+
T Consensus 74 ~~~~~~l~~~aa~~Al~dAGl~~~~~~~-~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is 152 (421)
T PTZ00050 74 ESRATHFAMAAAREALADAKLDILSEKD-QERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVA 152 (421)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccccC-cccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHH
Confidence 5899999999999999999998 66664 789999999999888877777777777788888999999999999999999
Q ss_pred HHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCC
Q 018905 205 MKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (349)
Q Consensus 205 ~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~ 284 (349)
..||++||+++|+++|+|++.||.+|+++|++|++|++||||+|...++..+..|..++.++..+...++..++|||.++
T Consensus 153 ~~~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~~~ 232 (421)
T PTZ00050 153 IKHKLKGPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDR 232 (421)
T ss_pred HHhCCCCcccccccHhHHHHHHHHHHHHHHHcCCCCEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcCCC
Confidence 99999999999999999999999999999999999999999999878998888899998887654556778999999999
Q ss_pred CcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 018905 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 347 (349)
Q Consensus 285 ~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~ 347 (349)
+|+++||||+++|||++++|+++|.+||++|+|++.++|+.+++.|++++.++.++|++||++
T Consensus 233 ~G~~~gEGAaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~Al~~ 295 (421)
T PTZ00050 233 AGFVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKD 295 (421)
T ss_pred CCEeeccceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998
|
|
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=340.29 Aligned_cols=264 Identities=35% Similarity=0.549 Sum_probs=226.3
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|+||+|||+|+++|.|. .++||++|++|+++|.+++.++. .+..+. +.+. ++
T Consensus 1 ~~rVvITG~G~vsp~G~-~~~~~~~l~~G~sgi~~~~~~~~-------------~~~~~~---~~~~-------~~---- 52 (381)
T PRK05952 1 MMKVVVTGIGLVSALGD-LEQSWQRLLQGKSGIKLHQPFPE-------------LPPLPL---GLIG-------NQ---- 52 (381)
T ss_pred CCeEEEEeeEEECcccC-HHHHHHHHHcCCCCeEeCCcccc-------------cccccc---eeec-------cc----
Confidence 56899999999999999 99999999999999998876430 011111 1110 00
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhcc---CCCCCcchhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRL---RRLSPFFIPRI 194 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 194 (349)
+ ..++ ++...++.+||+|+|+... .+++||++|++.++...+++++..+.+.+. ..+.|..++..
T Consensus 53 --~---~~~~---~~~~~a~~~Al~dagl~~~----~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (381)
T PRK05952 53 --P---SSLE---DLTKTVVTAALKDAGLTPP----LTDCGVVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDT 120 (381)
T ss_pred --c---cccc---HHHHHHHHHHHHhcCCCCC----CCCEEEEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHh
Confidence 0 1223 3556889999999999752 578999999999988888877776655443 25678888999
Q ss_pred hhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCC
Q 018905 195 LINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274 (349)
Q Consensus 195 ~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (349)
++|.++++++..|+++||+++++++|+|++.||..|+++|+.|++|++||||+|..+++..+..|..++.++.
T Consensus 121 ~~n~~a~~ia~~~~~~Gp~~ti~~aCasg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~ls~------- 193 (381)
T PRK05952 121 LPHQAAIAAARQIGTQGPVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALAK------- 193 (381)
T ss_pred cccHHHHHHHHHhCCCCccccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCcCC-------
Confidence 9999999999999999999999999999999999999999999999999999998889999999999998874
Q ss_pred CCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 275 ~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
..|+|||.+++|+++|||++++|||++++|+++|.+||++|.|++.++|+.|++.|++++.++.++|++||++|
T Consensus 194 ~~~rPfd~~r~G~v~gEGaa~lvLe~~~~A~~rg~~i~a~I~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~a 267 (381)
T PRK05952 194 TGAYPFDRQREGLVLGEGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARS 267 (381)
T ss_pred CCCCCCCCCCCCccccccEEEEEEeeHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999875
|
|
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=341.28 Aligned_cols=276 Identities=36% Similarity=0.564 Sum_probs=242.9
Q ss_pred ceEEEeeceeCCCCCC---HHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 40 RVVVTGIGMVTPLGCG---AETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 40 ~v~ItG~g~~~p~g~~---~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
+|+|||+|+++|.|.+ .++||++|.+|++++++++.++ ..++..++|.+++ |+
T Consensus 2 ~v~ItG~g~v~p~g~~~~~~~~~w~~l~~g~s~i~~~~~~~---------------~~~~~~~~g~i~~------~~--- 57 (407)
T cd00828 2 RVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK---------------SRFDRGVAGQIPT------GD--- 57 (407)
T ss_pred CEEEECceeecCCCCCCCCHHHHHHHHHcCCCceeeCCccc---------------ccCCccEEEEccC------CC---
Confidence 6999999999999999 9999999999999999988754 1345667888876 55
Q ss_pred CCCchhhhcc---CHHHHHHHHHHHHHHHHCCCCCCC-CCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchh
Q 018905 117 WLNSKDHRSI---ARFIAYALCAADEALHDAKWLPSD-QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIP 192 (349)
Q Consensus 117 ~i~~~~~~~~---~~~~~l~~~a~~~Al~dAgi~~~~-~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
++++..+++ +++++|++.++.+||+|||+.+++ ++ ..++|+++|++.++....+..+..+. +...++.++
T Consensus 58 -~~~~~~~~~~~~~~~~~l~~~aa~~Al~dAGl~~~~~~~-~~~~gv~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~ 131 (407)
T cd00828 58 -IPGWDAKRTGIVDRTTLLALVATEEALADAGITDPYEVH-PSEVGVVVGSGMGGLRFLRRGGKLDA----RAVNPYVSP 131 (407)
T ss_pred -cCHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCccccCC-ccCeEEEEeeccCCHHHHHHHHHHHh----hccCCcccc
Confidence 566777887 999999999999999999998876 54 88999999999988877766655444 345677788
Q ss_pred hhhh--hHHHHHHHHHcCC-CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhcccccccc
Q 018905 193 RILI--NMASGHVSMKYGF-QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKY 269 (349)
Q Consensus 193 ~~~~--~~~a~~ia~~lgl-~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~ 269 (349)
..+. |.++++|+..|++ +||+++|+++|+|++.||..|+++|++|++|++||||+|... +..+..|..++.++..
T Consensus 132 ~~~~~~~~~a~~is~~~gl~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~-~~~~~~f~~~~~ls~~- 209 (407)
T cd00828 132 KWMLSPNTVAGWVNILLLSSHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMGALSTA- 209 (407)
T ss_pred hhccccchHHHHHHHHhCcCCCCCcCcccHHHHHHHHHHHHHHHHHcCCCCEEEEccccccC-hHHHHHHHHcCCCCCC-
Confidence 8887 9999999999999 999999999999999999999999999999999999999966 8888889999888743
Q ss_pred CCCCCCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 270 NGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 270 ~~~~~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.+.+...++|||.+++|+++||||+++|||++++|+++|.++|++|.|++.++|+.+.+.+. .+.++.++|++||++|
T Consensus 210 ~~~~~~~~~pfd~~~~G~~~gEGAaalvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~-~~~~~~~a~~~Al~~A 287 (407)
T cd00828 210 EEEPEEMSRPFDETRDGFVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPA-GGKGIARAIRTALAKA 287 (407)
T ss_pred CCCCCcccCCCcCCCCcEEeecceEEEEEeeHHHHHHCCCeEEEEEEEEEeccCCCCCCCCC-ChHHHHHHHHHHHHHc
Confidence 22345789999999999999999999999999999999999999999999999999887766 6788999999999976
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-45 Score=379.96 Aligned_cols=287 Identities=25% Similarity=0.398 Sum_probs=255.4
Q ss_pred eEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCC-cchhhccccCCCcceEEEEecCCCCCCCCCCCCC-C
Q 018905 41 VVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNF-DRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-L 118 (349)
Q Consensus 41 v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~-i 118 (349)
|+|+||+|.+|+..+.++||++|.+|+++|+++|..+|+.+.| +++.. ...+.+.+++|++++ ...||+.|| |
T Consensus 6 IAIiGm~~rfPga~~~~~~W~~l~~g~~~i~~ip~~rwd~~~~~~~~~~--~~gk~~~~~ggfl~~---~~~FD~~fFgi 80 (1061)
T COG3321 6 IAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPT--VPGKSYSRWGGFLDD---VDDFDALFFGI 80 (1061)
T ss_pred EEEEeccccCCCCCCHHHHHHHHhcCCceeeecChhhhhHhhccCCccc--cccccccccccccCC---ccccCHHHcCC
Confidence 9999999999999999999999999999999999999987765 44432 144667889999996 677999999 9
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhH
Q 018905 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
+|++...|||+++|+++.+++||+|||+.+..+. ...+|||+|.+..++....... .. ...++...+...+.
T Consensus 81 sPrEA~~mDPQqRllLe~aw~AlEdAG~~~~~l~-g~~tgV~~g~~~~~y~~~~~~~------~~-~~~~~~~~g~~~~~ 152 (1061)
T COG3321 81 SPREAEAMDPQQRLLLEVAWEALEDAGIYPDSLR-GSATGVFAGASVADYLLLLLAD------DE-AEPEYAITGNSSSV 152 (1061)
T ss_pred CHHHHHhcCchHhHHHHHHHHHHHHcCCCccccC-CcceEEEEeeccCccccccccc------cc-cccceecccchhhH
Confidence 9999999999999999999999999999998885 6899999999877664332110 11 34556667777889
Q ss_pred HHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
.+++||+.|+++||+++|+++|+|++.|+++|++.|+.|+||++|+||++...+|.....|.+.+.++ +++.|+
T Consensus 153 ~a~Risy~l~l~GPs~~vdtaCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~~~p~~~~~~~~~g~ls------~~g~c~ 226 (1061)
T COG3321 153 AAGRISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS------PDGRCK 226 (1061)
T ss_pred HHHHHHHHhcCCCCCccccchhhHHHHHHHHHHHHHHcCCCCEEEecceEeccCCcceeeeecccCcC------CCCcce
Confidence 99999999999999999999999999999999999999999999999999999999989999999888 789999
Q ss_pred CCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCC--CCCCCCCCcHHHHHHHHHHHHHh
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH--HITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~--~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+||.+++|++.|||++++||++.++|.++|++||++|+|.+.++||. +++.|++ .++...+++||++|
T Consensus 227 ~fd~~adG~v~geG~g~vvLKrl~~A~~dgd~IyavI~gsavn~dG~~~gltaP~~--~aQ~~v~~~al~~a 296 (1061)
T COG3321 227 AFDADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNL--EAQADVIREALADA 296 (1061)
T ss_pred ecccCCCCEEEeeeEEEEEEEEhHHHHhCCCeEEEEEEeeeeccCCCcCCCCCCCH--HHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999985 5667765 56699999999876
|
|
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=334.84 Aligned_cols=272 Identities=25% Similarity=0.360 Sum_probs=220.3
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
.++|||||+|+++|.|++.++||++|++|+++ ...+..+ +..++....+. ++.+.+
T Consensus 5 ~~rVvITGiG~vsp~G~~~e~~w~aL~~G~sg-~~~~~~~--------------~~~~~~~~~~~---------~~~~~~ 60 (398)
T PRK06519 5 PNDVVITGIGLVSSLGEGLDAHWNALSAGRPQ-PNVDTET--------------FAPYPVHPLPE---------IDWSQQ 60 (398)
T ss_pred CCCEEEEcceEECCCCCCHHHHHHHHHcCCCC-CCCCccc--------------ccCcCcccccc---------cChhhc
Confidence 46899999999999999999999999999987 2221111 11112111111 232334
Q ss_pred CCch-hhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHH------------HHHHHHhccC
Q 018905 118 LNSK-DHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDA------------AQMICEKRLR 184 (349)
Q Consensus 118 i~~~-~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~------------~~~~~~~~~~ 184 (349)
++++ ..+++++.+++++.++.+||+|||+...+. +..++||++|++.++....... +..+.+.+++
T Consensus 61 ~~~~~~~r~~~r~~~~a~~Aa~~Al~dAGl~~~~~-~~~r~GvivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (398)
T PRK06519 61 IPKRGDQRQMETWQRLGTYAAGLALDDAGIKGNEE-LLSTMDMIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMT 139 (398)
T ss_pred CCchhhhhccCHHHHHHHHHHHHHHHHcCCCCCCC-CccceEEEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCC
Confidence 5555 678999999999999999999999975433 3679999999999887654432 2344455677
Q ss_pred CCCCcchhhhhhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccc
Q 018905 185 RLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRA 264 (349)
Q Consensus 185 ~~~~~~~~~~~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~ 264 (349)
.++|++++..++|.++++|+..||++||+++|+++|+|++.||.+|+++|++|++|++||||+|..+++..+..|..++.
T Consensus 140 ~~~p~~~~~~~~n~~a~~is~~~gl~Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~d~~lvGG~d~~~~~~~~~~~~~~~~ 219 (398)
T PRK06519 140 ELRPTLFLAQLSNLLAGNISIVHKVTGSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYNAERPDMLLLYELGGL 219 (398)
T ss_pred ccChhhhhhhhhhHHHHHHHHHhCCCCccccccCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHcCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999888888889999888
Q ss_pred cccccCCCCCCCCCC-CCC---CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHH
Q 018905 265 LTTKYNGTPQEASRP-FDC---GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILA 340 (349)
Q Consensus 265 l~~~~~~~~~~~~~p-f~~---~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a 340 (349)
++. ..++| ||. +++|+++||||+++|||++++|++||.+|||+|.|++. |.. +. .+.++.++
T Consensus 220 ls~-------~~~~p~~d~~~~~r~G~v~GEGAa~lvLE~~~~A~~Rga~i~AeI~G~~~--d~~----~~-~~~~~~~a 285 (398)
T PRK06519 220 LLK-------GGWAPVWSRGGEDGGGFILGSGGAFLVLESREHAEARGARPYARISGVES--DRA----RR-APGDLEAS 285 (398)
T ss_pred cCC-------CCCCchhccCccCCCCeeeeceEEEEEEeeHHHHHhCCCceEEEEEEEee--cCC----CC-ChHHHHHH
Confidence 873 34556 565 69999999999999999999999999999999999964 322 21 23577999
Q ss_pred HHHHHHHh
Q 018905 341 MTRALKQA 348 (349)
Q Consensus 341 ~~~Al~~A 348 (349)
|++||++|
T Consensus 286 m~~AL~~A 293 (398)
T PRK06519 286 LERLLKPA 293 (398)
T ss_pred HHHHHHHC
Confidence 99999986
|
|
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=331.84 Aligned_cols=290 Identities=23% Similarity=0.404 Sum_probs=246.5
Q ss_pred ceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC-C
Q 018905 40 RVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-L 118 (349)
Q Consensus 40 ~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~-i 118 (349)
+|+|||||+++|.|.+.++||++|++|++++++++..+|....|.++.. ........+++.+++ ...||...| +
T Consensus 2 ~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~---~~~~~~~~~~~ 76 (421)
T cd00833 2 PIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPG--KPGKTYTRRGGFLDD---VDAFDAAFFGI 76 (421)
T ss_pred CEEEEceeeECCCCCCHHHHHHHHHcCCCcCcCCChhHcCccccccccc--cCCCcceecceecCC---cccCCHhHcCC
Confidence 6999999999999999999999999999999999877765543321111 122345667788875 345787777 8
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhH
Q 018905 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
++++.+.+++.++|++.++.+||+|||+.+.+++ ..++||++|+..+.+ ..+.......+.++.+++.+.+.
T Consensus 77 ~~~~~~~~~~~~~l~~~aa~~AL~dAgl~~~~~~-~~~~gv~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
T cd00833 77 SPREAEAMDPQQRLLLEVAWEALEDAGYSPESLA-GSRTGVFVGASSSDY-------LELLARDPDEIDAYAATGTSRAF 148 (421)
T ss_pred CHHHHHhcCHHHHHHHHHHHHHHHHcCCCchhcC-CCCceEEeCcCHHHH-------HHHHhhcccccCcccccCcchHH
Confidence 8999999999999999999999999999888764 889999999976532 22223333457788888888899
Q ss_pred HHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
.+++++..+|++||+++|+++|+|++.||..|+++|++|++|++||+|+|...++.....|..++.++ +...++
T Consensus 149 ~a~~i~~~~gl~g~~~~v~~acas~~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~------~~~~~~ 222 (421)
T cd00833 149 LANRISYFFDLRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS------PDGRCR 222 (421)
T ss_pred HHHHHHHHcCCCCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeccCCHHHHHHHhhCCCCC------CCCCCC
Confidence 99999999999999999999999999999999999999999999999999988888888888888777 456899
Q ss_pred CCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
||+.+++|+++||||+++||+++++|+++|.++|++|.|++.++++.+.....+.+.++.+++++||++|
T Consensus 223 pf~~~~~g~~~geGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~p~~~~~~~a~~~al~~A 292 (421)
T cd00833 223 PFDADADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARA 292 (421)
T ss_pred CCCCCCCCeeeeceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998765555556778899999999876
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=333.80 Aligned_cols=291 Identities=22% Similarity=0.350 Sum_probs=246.0
Q ss_pred eEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC-CC
Q 018905 41 VVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-LN 119 (349)
Q Consensus 41 v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~-i~ 119 (349)
|+|||||+++|.|.+.++||++|.+|++++++++..+|....|..+...........+++++++. ...||++.| ++
T Consensus 1 v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~d~~~~~i~ 77 (424)
T smart00825 1 IAIVGMSCRFPGADSPEEFWDLLREGRDAITEIPADRWDADAFYYDPDPDRPGKSYVRWGGFLDD---VDLFDAAFFGIS 77 (424)
T ss_pred CEEEEEEeeCCCCCCHHHHHHHHHcCCcccccCChHHcCccccccccccccCCCcccccceecCc---hhhCCHhHcCCC
Confidence 78999999999999999999999999999999886666554432222211111235566777764 334888888 99
Q ss_pred chhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHH
Q 018905 120 SKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMA 199 (349)
Q Consensus 120 ~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
+++.+++++.++|++.++.+||+|||+++.+++ .++++|++|+..+++ ..+....+..+.++.+++.+.+..
T Consensus 78 ~~~~~~~~~~~~l~~~aa~~Al~dAGl~~~~id-~~~~gv~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 149 (424)
T smart00825 78 PREAEAMDPQQRLLLEVAWEALEDAGIDPESLR-GSRTGVFVGAMSSDY-------AELLARDPEDIEGYAATGTARSFI 149 (424)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcCCChhHcC-CCCCEEEEEEcHHHH-------HHHHhhCccccchhhhccchhHHH
Confidence 999999999999999999999999999988774 789999999865432 233344556677888888888999
Q ss_pred HHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCC
Q 018905 200 SGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRP 279 (349)
Q Consensus 200 a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p 279 (349)
+++|+..||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|...++..+..|..++.++ +++.++|
T Consensus 150 a~~i~~~lgl~g~~~~v~~acasg~~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~l~------~~~~~~p 223 (424)
T smart00825 150 ANRISYFFDLRGPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLS------PDGRCKT 223 (424)
T ss_pred HHHHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeecCCHHHHHHHhhcCCCC------CCCCCCC
Confidence 9999999999999999999999999999999999999999999999999888888888888887776 5678999
Q ss_pred CCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 280 FDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 280 f~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+.+++|+++||||+++||+++++|+++|.++|++|.|++.++++.+.....+.+.+...+|++||++|
T Consensus 224 f~~~~~g~~~geGAaalVLe~~e~A~~~g~~i~a~I~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~A 292 (424)
T smart00825 224 FDADADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGLTAPSGPAQARLIRQALARA 292 (424)
T ss_pred CCCCCCcccccceEEEEEEccHHHHHHCCCeEEEEEEEEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998775444556778889999999875
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=312.11 Aligned_cols=250 Identities=37% Similarity=0.636 Sum_probs=192.4
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|++|+|||+|+++|.|.+.++||++|++|++++.+++. +|..+.|+...... ....+.+.+++++ ...||..++
T Consensus 1 m~~V~ItG~g~~~p~g~~~~~~w~~L~~g~~~~~~~~~-r~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~ 74 (254)
T PF00109_consen 1 MRRVVITGMGCVTPGGDGLEEFWEALLSGRSGIRPIPE-RWDPSDYYDPPSRV-AGEIDDKKGGFID----DFDFDAYFF 74 (254)
T ss_dssp -S-EEEEEEEEEBTTBSSHHHHHHHHHTT---EEESCS-SSCHTTSTTSSCSE-EECBSSSEESSST----TTCGGGTST
T ss_pred CCEEEEEEEEEECcCCCCHHHHHhhhccCceeeeeecc-ccccccccccCCcc-cccccccccceee----ecccccccc
Confidence 68999999999999999999999999999999999998 77666552100000 1122222333333 255777776
Q ss_pred -CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCC-ceEEEEeCCCCChHHHHHHHHHHHHhc--cCCCCCcchhh
Q 018905 118 -LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKE-RTGVSIGGGIGSISDTVDAAQMICEKR--LRRLSPFFIPR 193 (349)
Q Consensus 118 -i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~-~~gv~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 193 (349)
++++..++|+++++|++.++.+||+|||+....+. .. ++||++|++.+.. ..+..+...+ +....|..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~l~aa~~Al~dAg~~~~~~~-~~~r~gv~~G~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~ 149 (254)
T PF00109_consen 75 GIPPREARRMDRQSRLALAAAREALEDAGLDPDDLD-GERRVGVFVGSSSGDY----EFYRALDEDGETPRDVSPWFVPN 149 (254)
T ss_dssp CHHHHHHHTS-HHHHHHHHHHHHHHHHHTSTGGGHT-GGGTEEEEEEESSSHH----HHHHHHHHHTTCGGGSHTTHHHH
T ss_pred cccchhhhhhhhhhhHHHHHhhhhcccccccccccc-cccceeeccccccccc----cccccccccccccccccccccCc
Confidence 77778889999999999999999999999876553 44 5999999988722 4444444444 45666755666
Q ss_pred hhhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCC
Q 018905 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (349)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (349)
.++|.++++|+..||++||+++|+++|+||+.||++|+++|++|++|++||||+|..+++..+..|..++.++.
T Consensus 150 ~~~~~~a~~ia~~~gl~G~~~tv~~acaSgl~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~~s~------ 223 (254)
T PF00109_consen 150 TLPNSAAGRIAILFGLRGPSYTVSTACASGLAALEAAYRAIRSGEADVALVGGVDAPLSPFILAGFSALGALSA------ 223 (254)
T ss_dssp HSTTHHHHHHHHHHTB-SSEEEEE-GGGHHHHHHHHHHHHHHTTSSSEEEEEEEE--SSHHHHHHHHHTTBB-T------
T ss_pred ccccccccchhhhcCCCCccccccccccccccccchhccccccccccccccccccccccccccccccccccccc------
Confidence 79999999999999999999999999999999999999999999999999999997799999999999997773
Q ss_pred CCCCCCCCCCCCcceecceeeeEEeCChHHH
Q 018905 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHA 304 (349)
Q Consensus 274 ~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A 304 (349)
++.++||+.+++|+++||||++|||+++++|
T Consensus 224 ~~~~~pf~~~~~G~v~gEGa~~~vLe~~~~A 254 (254)
T PF00109_consen 224 DGPCRPFDPFADGFVLGEGAGALVLERLEHA 254 (254)
T ss_dssp TSGGGSTBTTB-SB-BB-EEEEEEEEEHHHH
T ss_pred cccccccCCCCCCEEEECceEEEEEEEhhhC
Confidence 3689999999999999999999999999886
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=316.50 Aligned_cols=279 Identities=34% Similarity=0.426 Sum_probs=229.2
Q ss_pred CceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCC
Q 018905 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (349)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i 118 (349)
.+|+|||+|+++|.|.+.++||++|++|++++++++.++ ...+..++++.++. |+. .+
T Consensus 11 ~~VvITG~G~vs~~G~~~~~~~~~L~~G~s~i~~~~~~~--------------~~~~~~~~~g~~~~------~~~-~~- 68 (425)
T PRK06501 11 PIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFP--------------TEGLRTRIAGTVDF------LPE-SP- 68 (425)
T ss_pred cCEEEEeeeEECCCCCCHHHHHHHHHcCCCceEcCCccc--------------ccCCCCceEEEEee------ccc-cc-
Confidence 369999999999999999999999999999999887643 33556778888863 222 11
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHCCCCCCCC-------------CCCCceEEEEeCCCCChHHHHHHHHHHHHhccCC
Q 018905 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQ-------------GQKERTGVSIGGGIGSISDTVDAAQMICEKRLRR 185 (349)
Q Consensus 119 ~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~-------------~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~ 185 (349)
...+++..++++.++++||+|||+...+. ....+++++.++...... .+..++......
T Consensus 69 ----~~~~~~~~~~~~~aa~~Al~dAgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 140 (425)
T PRK06501 69 ----FGASALSEALARLAAEEALAQAGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAP----SYDRLLRAARGG 140 (425)
T ss_pred ----ccccCHHHHHHHHHHHHHHHHcCCCccccccceeeccccccCCCCceEEEEEecCCccHH----HHHHHHhhcCcc
Confidence 22356788999999999999999953221 124578888877654322 233333333333
Q ss_pred CCCcchhhhhhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhcccc
Q 018905 186 LSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRAL 265 (349)
Q Consensus 186 ~~~~~~~~~~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l 265 (349)
..+..++....+.++++|+..||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|..++.+
T Consensus 141 ~~~~~~~~~~~~~~a~~i~~~~gl~G~~~~i~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~d~~~~~~~~~~~~~~~~l 220 (425)
T PRK06501 141 RFDALHERFQFGSIADRLADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSAL 220 (425)
T ss_pred cCChhhhhhcccHHHHHHHHHhCCCCCceeecCccHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHhhcc
Confidence 34445677777889999999999999999999999999999999999999999999999999988899999999888887
Q ss_pred ccccCCCCCCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHH
Q 018905 266 TTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRAL 345 (349)
Q Consensus 266 ~~~~~~~~~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al 345 (349)
+.. .+.++..++|||.+++|+++|||++++|||+.++|+++|.+||++|.|++.++|++|.+.+.+++.++.++|++||
T Consensus 221 s~~-~~~~~~~~rpfd~~r~G~v~GEGaaalVLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~AL 299 (425)
T PRK06501 221 STQ-NDPPEKASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGAIRAAL 299 (425)
T ss_pred ccC-CCCCCcccCCCCCCCCCeeeeccEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 742 2346678999999999999999999999999999999999999999999999999988878888888999999999
Q ss_pred HHh
Q 018905 346 KQA 348 (349)
Q Consensus 346 ~~A 348 (349)
++|
T Consensus 300 ~~a 302 (425)
T PRK06501 300 ADA 302 (425)
T ss_pred HHc
Confidence 876
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=296.10 Aligned_cols=219 Identities=49% Similarity=0.794 Sum_probs=205.2
Q ss_pred cCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHH
Q 018905 126 IARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM 205 (349)
Q Consensus 126 ~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~ 205 (349)
+++..++++.++.+||+|||+.. +.+++||++|++.++...+++.++.+...+++.++|+.++..+.|+++++|+.
T Consensus 1 ~~~~~~~~~~a~~~a~~~a~~~~----~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~ 76 (342)
T PRK14691 1 MGRWWRYKWITFHPSLTHADNTE----KQERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSI 76 (342)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCC----CcccEEEEEecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHHHH
Confidence 46789999999999999999862 47899999999999999999988888888888999999999999999999999
Q ss_pred HcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCC
Q 018905 206 KYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (349)
Q Consensus 206 ~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~ 285 (349)
.||++||+++|+++|+|++.||..|+++|+.|++|++||||+|...++..+..|..++.++......|++.|+|||.+++
T Consensus 77 ~~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~ 156 (342)
T PRK14691 77 KHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARD 156 (342)
T ss_pred HhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999899999999999999986545568889999999999
Q ss_pred cceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 286 G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+++||||+++|||++++|+++|.++|++|.|++.++|+.+++.|.+.+.++..+|++||++|
T Consensus 157 G~v~gEGAa~lvLes~~~A~~rG~~i~a~I~g~~~~~d~~~~~~p~p~~~~~~~ai~~AL~~A 219 (342)
T PRK14691 157 GFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAEDGDGAYRAMKIALRQA 219 (342)
T ss_pred CccccceEEEEEEeeHHHHHhCCCCceEEEEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999888888999999999999986
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=296.42 Aligned_cols=269 Identities=27% Similarity=0.382 Sum_probs=218.1
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCC-CceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGE-CGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
|++|||||+|+++|.|.+.++||++|++|+ ++|++++.+. . .++.. .+.+++ |+. .
T Consensus 1 m~~VvITG~G~vsp~G~~~~~~~~~l~~G~~sgi~~~~~~~--------------~-~~~~~-~g~~~~------~~~-~ 57 (392)
T PRK09185 1 MTPVYISAFGATSALGRGLDAILAALRAGRASGMRPCDFWL--------------V-DLPTW-VGEVVG------VEL-P 57 (392)
T ss_pred CCcEEEEeeEEECCCcCCHHHHHHHHHcCCCCCeEeCcccc--------------c-cCCeE-EEEecC------ccc-c
Confidence 578999999999999999999999999999 9999887643 1 12222 355654 542 3
Q ss_pred CCCchhhhccCHHHHHHHHHHHH---HHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhh
Q 018905 117 WLNSKDHRSIARFIAYALCAADE---ALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR 193 (349)
Q Consensus 117 ~i~~~~~~~~~~~~~l~~~a~~~---Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
+++.+..+.+++..+++..++.+ ++.+++ .+. +.+++||++|++.++....+..+..+.........++.++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~---~~~-~~~r~gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (392)
T PRK09185 58 ALPAALAAFDCRNNRLALLALQQIEPAVEAAI---ARY-GADRIGVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQ 133 (392)
T ss_pred cCCHHHHhcCCHHHHHHHHHHHHHHHHHHhhc---ccC-CCCcEEEEEeeCCccHHHHHHHHHHHhhccCCCCCchhhhh
Confidence 35556667788888888777766 555554 222 36789999999999988877776654432222234667778
Q ss_pred hhhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCC
Q 018905 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (349)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (349)
...+.++++|+..||++||+++++++|+|++.||..|+++|++|++|.+||+|+|. .++..+..|..++.++.
T Consensus 134 ~~~~~~a~~ia~~lgl~Gp~~~i~~acas~~~Al~~A~~~I~~G~~d~vlvgg~d~-~~~~~~~~~~~~~~l~~------ 206 (392)
T PRK09185 134 QELGSLADFLRAYLGLSGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLSP------ 206 (392)
T ss_pred hcccHHHHHHHHHhCCCCCcccccChhHHHHHHHHHHHHHHHcCCCCEEEEeeccc-cChHHHHHHHhccccCC------
Confidence 88899999999999999999999999999999999999999999999999999997 56666677877777663
Q ss_pred CCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 274 ~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+.|+|||.+++|+++|||++++||+++ ++.+ ++|.|++.++|+.+++.|++.+.++.++|++||++|
T Consensus 207 -~~~~Pfd~~~~G~~~gEGaa~vVLe~~-----~~~~--~~I~g~g~~~d~~~~~~~~~~~~~~~~a~~~Al~~A 273 (392)
T PRK09185 207 -QPCRPFSANRDGINIGEAAAFFLLERE-----DDAA--VALLGVGESSDAHHMSAPHPEGLGAILAMQQALADA 273 (392)
T ss_pred -CccCCCcCCCCccceeceEEEEEEEEc-----CCCc--EEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999999987 2333 579999999999998888988888899999999876
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=284.92 Aligned_cols=277 Identities=19% Similarity=0.304 Sum_probs=239.9
Q ss_pred CCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
++++|+|+|+...+|...++++||.+|.+|.+-+++-+. +|..+.| ++|.+. |.+.+ ...||..+
T Consensus 9 ~~edIvIsG~sgklPes~nv~eF~~nLl~g~DmVtdd~r-rW~~G~y----------gLP~r~-gKlKd---L~kFDa~f 73 (2376)
T KOG1202|consen 9 KQEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDPR-RWEAGLY----------GLPKRS-GKLKD---LNKFDAGF 73 (2376)
T ss_pred cCCcEEEeccCCCCCCcccHHHHhhhhhcccccccCCcc-ccccccc----------CCchhh-cchhh---hhhhcccc
Confidence 467899999999999999999999999999987776554 5776655 334343 33332 46699999
Q ss_pred C-CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhh
Q 018905 117 W-LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (349)
Q Consensus 117 ~-i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
| ..+++...|||+.+|++++.++|+-||||++.+++ +.++|||+|.+..+.+.. +..++..+..+.+.++.
T Consensus 74 f~vh~KQa~~MDPq~RlLLE~t~EAivDaGiNP~~LR-Gs~tGv~vg~s~seTs~~-------~~~dp~t~~Gy~mtgc~ 145 (2376)
T KOG1202|consen 74 FGVHPKQANTMDPQLRLLLEATWEAIVDAGINPDDLR-GSRTGVFVGVSGSETSGA-------LSQDPDTVNGYSMTGCV 145 (2376)
T ss_pred cCcCcccccccCHHHHHHHHHHHHHHHhCCCChhhcC-cccceeEEeecCcccccc-------ccCCCccccceeecccH
Confidence 9 99999999999999999999999999999999997 999999999976654322 12344556777888999
Q ss_pred hhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCC
Q 018905 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (349)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (349)
..|++++|++.|+++||++.++++|+|++.||..|.+.|+.|+||.+||+|+...+.|.....|.++|+++ |++
T Consensus 146 raMfaNRiSytFDfqGPS~s~DtacsSsl~al~~a~~~~r~gqcd~AiVaG~~liLkPt~slQFlRLgmls------~dG 219 (2376)
T KOG1202|consen 146 RAMFANRISYTFDFQGPSFSVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLS------PDG 219 (2376)
T ss_pred HHHhhcceeEEEeccCCchhhhhhhHHHHHHHHHHHHhhhccCCchhhhcccceEeccchhhHHHHhcCcC------CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred CCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCC---CCCCCCCCcHHHHHHHHHHHHHh
Q 018905 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH---HITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 276 ~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~---~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.|+.||...||++.+||.++++|.+.+.|+ ++||.|+-..++.||+ .++.|+ |.-+...++..|+.|
T Consensus 220 sCkaFDeagnGY~Rseg~~avllqrk~~Ar----RvYAtilnartNTDGfKEqGvTfP~--G~~Q~qLi~e~Yse~ 289 (2376)
T KOG1202|consen 220 SCKAFDEAGNGYCRSEGVVAVLLQRKSLAR----RVYATILNARTNTDGFKEQGVTFPS--GDMQEQLIRETYSEA 289 (2376)
T ss_pred cccchhccCCceeecCceEEEEEehhHHHH----HHHHHhhccccCCCchhhcCccCCC--cHHHHHHHHHHHHhc
Confidence 999999999999999999999999988886 4799999999999997 467665 665677888887754
|
|
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=218.41 Aligned_cols=243 Identities=20% Similarity=0.221 Sum_probs=174.2
Q ss_pred CCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
||++|+|+|+|+++|.|.+.++.|.+|+.|.+.......... ...........+
T Consensus 1 ~~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~--------------~~~~~i~~~~~~------------ 54 (348)
T PRK06147 1 MMRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDP--------------PGGEWLIGAPVP------------ 54 (348)
T ss_pred CCCceEEEecceeecCcCCHHHHHHHHHcccccccccccccC--------------CCCCceEeecCc------------
Confidence 678999999999999999999999999999776533322110 000001111111
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHCC-CCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhh
Q 018905 117 WLNSKDHRSIARFIAYALCAADEALHDAK-WLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (349)
Q Consensus 117 ~i~~~~~~~~~~~~~l~~~a~~~Al~dAg-i~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
..+......+..+|+..|+.+||++++ +.+. ++.++++.+..+. ...+..+
T Consensus 55 --~~~~~~~~~r~~~La~~Al~~aL~~a~~~~~~------~i~lil~~~~~~~----------------~~~~~~~---- 106 (348)
T PRK06147 55 --LPPPWRGPERLAEMAAPAIAEALEGLPALDAS------EAPLLLCVAEEER----------------PGRPPDL---- 106 (348)
T ss_pred --CCcccCchHHHHHHHHHHHHHHHHhccccccc------CCcEEEEeCchhc----------------CCCCcch----
Confidence 011112235778899999999999988 4443 3467776533110 0011111
Q ss_pred hhHHHHHHHHHcCC--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCC
Q 018905 196 INMASGHVSMKYGF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (349)
Q Consensus 196 ~~~~a~~ia~~lgl--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (349)
...++..++..+|+ ++|+++|.++|+|++.||..|+++|+.|++|.+||||+|.+..+..+..|...+.+..
T Consensus 107 ~~~~~~~~~~~lG~~~~~~~~~i~~~casg~~Al~~A~~~i~~G~~~~~lvgg~d~~~~~~~~~~~~~~~~l~~------ 180 (348)
T PRK06147 107 EERLLRELEARLGLRLEPGSAVIARGRVSGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLT------ 180 (348)
T ss_pred HHHHHHHHHHHhCCCCCCCcccccccchHHHHHHHHHHHHHHcCCCCEEEEEeeccccCHHHHHHHHHhhccCC------
Confidence 12234566777777 5789999999999999999999999999999999999999788777777776655542
Q ss_pred CCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCC-CCCCcHHHHHHHHHHHHHh
Q 018905 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQ-PHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 274 ~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~-p~~~g~~~~~a~~~Al~~A 348 (349)
+.+++|+++||||+++|||+.++|++++.+||+ .|++...++.|.+. +.+.++++.++|++||++|
T Consensus 181 -------~~~~~G~v~GEGA~a~vLe~~~~A~~rga~i~a--~g~~~~~~~~~~~~~~p~~g~gl~~ai~~AL~~a 247 (348)
T PRK06147 181 -------SQNSNGFIPGEAAAAVLLGRPAGGEAPGLPLLG--LGLGREPAPVGESEDLPLRGDGLTQAIRAALAEA 247 (348)
T ss_pred -------CCCCCceeeeceEEEEEEccHhhhhcCCCceEE--EEEeecCCCcccCCCCCCChHHHHHHHHHHHHHc
Confidence 236899999999999999999999999999998 66666666654442 2236889999999999875
|
|
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=199.93 Aligned_cols=208 Identities=35% Similarity=0.519 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..+|++.|+.+||++||++..... .+..++++|++.+..... ...........|+.+.+.+.+.++++|+..+|
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~~~~-~~i~~ii~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 84 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQK-NPIVGVVVGTGGGSPRFQ-----VFGADAMRAVGPYVVTKAMFPGASGQIATPLG 84 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCccccC-CCCEEEEEEeCCccHHHH-----hhhhccccccCcchhhcccchHHHHHHHHHhC
Confidence 678999999999999999843221 344599999987655322 22333455778889999999999999999999
Q ss_pred CCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcce
Q 018905 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (349)
Q Consensus 209 l~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~~ 288 (349)
++||+++|+++|+|++.||++|.++|++|++|.+||+++|....+.... +...+.+. .++..++||+...+|++
T Consensus 85 l~g~~~~v~~~cas~~~al~~A~~~i~~g~~~~~Lv~~~d~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~g~~ 158 (332)
T cd00825 85 IHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCE-FDAMGALS-----TPEKASRTFDAAADGFV 158 (332)
T ss_pred CCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHH-HHhhcccc-----CCCCCCCCCCCCCCCEE
Confidence 9999999999999999999999999999999999999999866655433 22223332 25678899999999999
Q ss_pred ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 289 ~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+|||++++||+++++|++++.+++++|.+.+...++.+...+.+....+.++++++|+++
T Consensus 159 ~gdGaaA~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~a 218 (332)
T cd00825 159 FGDGAGALVVEELEHALARGAHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVA 218 (332)
T ss_pred EEeeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCcCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999998887765545555678889999999865
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-18 Score=152.37 Aligned_cols=151 Identities=33% Similarity=0.489 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..+|+.+|+.+||+++|+++++++ ++++++..++.. .+..+.+|+..+|
T Consensus 7 ~~~l~~~A~~~al~~ag~~~~~i~-----~li~~~~~~~~~--------------------------~~~~a~~i~~~lg 55 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSKGPIV-----GVIVGTTGGSGE--------------------------FSGAAGQLAYHLG 55 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCce-----EEEEEECCCCcc--------------------------ccHHHHHHHHHhC
Confidence 678999999999999999988777 999998755421 2456788999999
Q ss_pred C-CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 F-QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l-~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
+ ++|+++|+++|+|++.||++|.++|++|++|.+||+++|. +
T Consensus 56 ~~~~~~~~i~~~C~s~~~al~~A~~~i~~g~~~~~lv~~~e~-------------------------------------~ 98 (254)
T cd00327 56 ISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE-------------------------------------F 98 (254)
T ss_pred CCCCCcceeccHhHHHHHHHHHHHHHHHCCCCCEEEEEecce-------------------------------------e
Confidence 9 8999999999999999999999999999999999999996 4
Q ss_pred eecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 288 VIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 288 ~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
++||||+++||++++.+.+++.+++++|.++....++.+.. +.+....+.++++++|+++
T Consensus 99 ~~gdGAaa~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~a 158 (254)
T cd00327 99 VFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMV-PAVSGEGLARAARKALEGA 158 (254)
T ss_pred eecceEEEEEECcHHHHHHCCCceEEEEEEEEEcCCCCCCC-CCCChHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999998877755432 2344678899999999875
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=150.40 Aligned_cols=185 Identities=21% Similarity=0.304 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+++|+++++++ .|++|+...+.. ....++..++..+|
T Consensus 27 ~~dL~~~A~~~aL~~agi~~~~ID-----~vi~G~~~~~~~-------------------------~~~~~a~~i~~~lG 76 (392)
T PRK07108 27 GATLGGHVVQHAVERAKLDPAEVE-----DVIMGCANPEGA-------------------------TGANIARQIALRAG 76 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----cEEEEEeecccc-------------------------cccHHHHHHHHHcC
Confidence 578999999999999999999887 799998543210 01136677888889
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH----------HHH------HHhcccc----c
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------MAG------FCKSRAL----T 266 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~----------~~~------~~~~~~l----~ 266 (349)
+. .|+++|+++|+||+.||+.|+++|++|.+|++||+|+|++..... ... +..++.. .
T Consensus 77 l~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vlagGvE~ms~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~~a 156 (392)
T PRK07108 77 LPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISCVQNEMNRHMLREGWLVEHKPEIYWSMLQTAENVA 156 (392)
T ss_pred CCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCCCcCCCcCccchhhhccCCccccCHHHHHHHHH
Confidence 85 699999999999999999999999999999999999998643110 000 0000100 0
Q ss_pred cccC----------------------C-----------------CCCCC--------------------------CC-CC
Q 018905 267 TKYN----------------------G-----------------TPQEA--------------------------SR-PF 280 (349)
Q Consensus 267 ~~~~----------------------~-----------------~~~~~--------------------------~~-pf 280 (349)
..|. + +|... .+ +|
T Consensus 157 ~~~~i~r~~~d~~a~~s~~~A~~A~k~g~~~~ei~pv~~~~~~~n~~a~~~~~~~~~~~~de~~r~~~t~e~l~~l~~~~ 236 (392)
T PRK07108 157 KRYGISKERQDEYGVQSQQRAAAAQAAGRFDDEIVPITVTAGVADKATGRLFTKEVTVSADEGIRPDTTLEGVSKIRSAL 236 (392)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcCceeeEEecccccccccCcccccceeEccCCCCCCCCCHHHHhcCCCCC
Confidence 0000 0 01000 01 12
Q ss_pred C----CCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 281 D----CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 281 ~----~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
. .-.+...++|||+++||++++.|++++.+++++|+|++...+ .|++.+.+...|+++||++|
T Consensus 237 ~~g~lt~~n~~~~~DGAaa~vl~s~~~A~~~g~~~~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~a 303 (392)
T PRK07108 237 PGGVITAGNASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGC-----EPDEMGIGPVFAVPKLLKQA 303 (392)
T ss_pred CCCCCcCCcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecc-----CCcccchhHHHHHHHHHHHc
Confidence 0 002233389999999999999999999999999999999865 46666667789999999986
|
|
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=152.45 Aligned_cols=184 Identities=23% Similarity=0.350 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+|+|+++++++ .|++|+...... ..+ ++..++..+|
T Consensus 26 ~~~La~~A~~~AL~~agl~~~dID-----~vi~g~~~~~~~-------------------------~~~-~a~~va~~lG 74 (393)
T PRK05656 26 AVELGAAVIRRLLEQTGLDPAQVD-----EVILGQVLTAGA-------------------------GQN-PARQAAIKAG 74 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEecCCCC-------------------------CCc-HHHHHHHHcC
Confidence 477999999999999999999888 899998532110 012 4456888899
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHH---------------HHHH------Hh---
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALS---------------MAGF------CK--- 261 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~---------------~~~~------~~--- 261 (349)
+. -|+++|+++|+|++.++..|+++|++|.+|++||+|+|.+.. |+. +..+ ..
T Consensus 75 l~~~~p~~~V~~~Casg~~ai~~A~~~I~sG~~d~vLv~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK05656 75 LPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAPYVLPGARTGLRMGHAQLVDSMITDGLWDAFND 154 (393)
T ss_pred CCCCcceEEecccchhHHHHHHHHHHHHHcCCCCEEEEEEEhhhccCccccccccccccccchhhhhhhccccccccccC
Confidence 96 499999999999999999999999999999999999997543 110 0000 00
Q ss_pred --ccccc----cccC-------------------CCCCCCCC----CCCC------------------------------
Q 018905 262 --SRALT----TKYN-------------------GTPQEASR----PFDC------------------------------ 282 (349)
Q Consensus 262 --~~~l~----~~~~-------------------~~~~~~~~----pf~~------------------------------ 282 (349)
++... ++|+ ..+++..+ |+..
T Consensus 155 ~~~a~~a~~~~~~~gitre~~d~~Av~sh~~a~~a~~~a~~~~ei~pv~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p 234 (393)
T PRK05656 155 YHMGITAENLVEKYGISREAQDAFAAASQQKAVAAIEAGRFDDEITPILIPQRKGEPLAFATDEQPRAGTTAESLAKLKP 234 (393)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEEeccCCCCceEeccCCCCCCCCCHHHHhcCCC
Confidence 00000 0011 00111110 1100
Q ss_pred --CCCcce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 283 --GRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 283 --~~~G~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
..+|.+ ++|||+++||+++++|+++|.+|+++|.|++.... .|++.+.+...++++||++|
T Consensus 235 ~~~~~g~lt~~~~s~~~DGAaa~vl~s~~~A~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~a 304 (393)
T PRK05656 235 AFKKDGSVTAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAGV-----DPAIMGIGPVSATRRCLDKA 304 (393)
T ss_pred CcCCCCCEEccccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEecC-----CCcccchhHHHHHHHHHHHc
Confidence 022445 89999999999999999999999999999998753 56666778889999999986
|
|
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.6e-16 Score=146.05 Aligned_cols=184 Identities=23% Similarity=0.295 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.++++++|+|+|+++++++ .|++|+..+... ...++..++...|
T Consensus 27 ~~~L~~~a~~~al~~agi~~~~Id-----~vv~G~~~~~~~--------------------------g~~~~r~~~~~~G 75 (392)
T PRK06633 27 APMLAAHLIKDILQNSKIDPALVN-----EVILGQVITGGS--------------------------GQNPARQTLIHAG 75 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcC-----EEEEEecCcccc--------------------------ccHHHHHHHHHCC
Confidence 577899999999999999999888 899998543211 1134455677889
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHH-H-H---------H-----HHh--------
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALS-M-A---------G-----FCK-------- 261 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~-~-~---------~-----~~~-------- 261 (349)
+. -|.++|+++|+||+.|+..|+++|++|.+|++||+|+|++.. +.. . . . +..
T Consensus 76 l~~~~p~~~V~~~CaSG~~Ai~~A~~~I~sG~~dvvla~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (392)
T PRK06633 76 IPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLGMHGSYIRAGAKFGDIKMVDLMQYDGLTDVFSGV 155 (392)
T ss_pred CCCCccchhhcchhHHHHHHHHHHHHHHHcCCCCEEEEcccccCCCCCcchhcccccccCcchhhhhhcccccccccCcc
Confidence 96 399999999999999999999999999999999999998552 210 0 0 0 000
Q ss_pred -cccccc----ccC------------------CCCC-C----C--------------------C------------CC-C
Q 018905 262 -SRALTT----KYN------------------GTPQ-E----A--------------------S------------RP-F 280 (349)
Q Consensus 262 -~~~l~~----~~~------------------~~~~-~----~--------------------~------------~p-f 280 (349)
++...+ +|+ .++. + . . +| |
T Consensus 156 ~~a~~a~~~~~~~gitre~~d~~Avksh~~a~~np~A~~~~~ei~p~~v~~~~~~~~~~~d~~~rp~~~~e~l~~l~p~~ 235 (392)
T PRK06633 156 FMGITAENISKQFNISRQEQDEFALSSHKKAAKAQLAGIFKDEILPIEVTIKKTTSLFDHDETVRPDTSLEILSKLRPAF 235 (392)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCCcCceeeEEeccCCCceeeccCCCCCCCCCHHHHccCCCcc
Confidence 000000 000 0011 0 0 0 11 2
Q ss_pred CCC-----CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 281 DCG-----RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 281 ~~~-----~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+.. .|...++|||+++||++++.|++++.+|+++|+|++...+ .|...+.+...++++||++|
T Consensus 236 ~~~g~lt~~n~s~~sDGAaalvl~see~A~~~g~~p~a~I~g~~~~~~-----~~~~~~~~~~~a~~~Al~~A 303 (392)
T PRK06633 236 DKNGVVTAGNASSINDGAACLMVVSEEALKKHNLTPLARIVSYASAGV-----DPSIMGTAPVPASQKALSKA 303 (392)
T ss_pred CCCCCEechhcCCccCceEEEEEecHHHHHHCCCCeeEEEEEEEEecC-----CcchhchHHHHHHHHHHHHc
Confidence 110 1223489999999999999999999999999999999875 44444567789999999986
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=144.51 Aligned_cols=185 Identities=30% Similarity=0.369 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+++|+++++|+ .|++|+..+... .....+..++..+|
T Consensus 27 ~~eL~~~A~~~AL~~agi~~~dID-----~vi~g~~~~~~~-------------------------~~~~~a~~~~~~~G 76 (394)
T PRK09051 27 PTDLGATVVREALARAGVDPDQVG-----HVVFGHVIPTEP-------------------------RDMYLSRVAAINAG 76 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcC-----EEEEeeeccccC-------------------------CCccHHHHHHHHcC
Confidence 467999999999999999999888 899997543210 00123334556678
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH--HH-----------HHH-------h-----
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS--MA-----------GFC-------K----- 261 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~--~~-----------~~~-------~----- 261 (349)
+. .|+++|+++|+|++.|+..|+++|++|.+|++||+|+|.+..... .. .+. .
T Consensus 77 l~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLvvG~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T PRK09051 77 VPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAESMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFGTI 156 (394)
T ss_pred CCCCCceEEecccchHHHHHHHHHHHHHHcCCCCEEEEEeehhcccCcccccccccccccCCchhhhhhcccccccccCC
Confidence 84 499999999999999999999999999999999999998543210 00 000 0
Q ss_pred -cccccc----ccC------------------C-------------------------CCCCCCC------------CCC
Q 018905 262 -SRALTT----KYN------------------G-------------------------TPQEASR------------PFD 281 (349)
Q Consensus 262 -~~~l~~----~~~------------------~-------------------------~~~~~~~------------pf~ 281 (349)
++...+ +|+ . +|+...| |+.
T Consensus 157 ~~~~~a~~~~~~ygitre~~d~~avksh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~~~da~~r~~~t~e~v~~~~~v~ 236 (394)
T PRK09051 157 HMGVTAENVAAKYGISREAQDALALESHRRAAAAIAAGYFKDQIVPVEIKTRKGEVVFDTDEHVRADTTLEDLAKLKPVF 236 (394)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeecCCCCCeEECCCCCCCCCCCHHHHcCCCCcc
Confidence 000000 000 0 1222222 222
Q ss_pred CCCCcce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 282 CGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 282 ~~~~G~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
...+|.+ ++|||+++||++++.|++++.+|+++|.|++.... .|+..+.+...++++||++|
T Consensus 237 ~~~~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~g~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~al~~a 305 (394)
T PRK09051 237 KKENGTVTAGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGV-----DPEYMGIGPVPATQKALERA 305 (394)
T ss_pred cCCCccEeCCcCCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEecc-----CCCcccccHHHHHHHHHHHc
Confidence 1111333 68999999999999999999999999999999875 44445567789999999986
|
|
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=145.44 Aligned_cols=189 Identities=22% Similarity=0.269 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+|+|+++++++ ++++|+..++.... ...++..++..+|
T Consensus 22 ~~eLa~~a~~~Al~dagl~~~~Id-----~vi~g~~~~~~~~~------------------------~~~~a~~va~~lG 72 (389)
T PRK06064 22 LRDLAVEAGLEALEDAGIDGKDID-----AMYVGNMSAGLFVS------------------------QEHIAALIADYAG 72 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccccccc------------------------cccHHHHHHHHcC
Confidence 477999999999999999998887 88888754332100 0124567888999
Q ss_pred CC-CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH--HHH-H--------HH---------hccccc-
Q 018905 209 FQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL--SMA-G--------FC---------KSRALT- 266 (349)
Q Consensus 209 l~-Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~--~~~-~--------~~---------~~~~l~- 266 (349)
++ .|.++|+++|+|++.||..|+.+|++|++|.+||+|+|.+.... ... . +. .++.+.
T Consensus 73 l~~~~~~~v~~aCasg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~ 152 (389)
T PRK06064 73 LAPIPATRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATEAIARAGDYEWEEFFGATFPGLYALIAR 152 (389)
T ss_pred CCCCCeeEEeCCcHHHHHHHHHHHHHHHCCCCCEEEEEEEEecccCcchhhhhhhhcccccccccccCCchHHHHHHHHH
Confidence 97 59999999999999999999999999999999999998632110 000 0 00 000000
Q ss_pred ---cccC------------------CCCCCC----------------CCCCCCCCCcceecceeeeEEeCChHHHHhcCC
Q 018905 267 ---TKYN------------------GTPQEA----------------SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309 (349)
Q Consensus 267 ---~~~~------------------~~~~~~----------------~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~ 309 (349)
++|+ .+|... +.|+. ..+...++|||+++||++++.|++++.
T Consensus 153 ~~~~~yG~s~e~~a~~a~~~~~~A~~np~a~~~~~~t~~~~~~s~~i~~Pl~-~~d~~~~~dGAaa~vL~s~~~A~~~~~ 231 (389)
T PRK06064 153 RYMHKYGTTEEDLALVAVKNHYNGSKNPYAQFQKEITVEQVLNSPPVADPLK-LLDCSPITDGAAAVILASEEKAKEYTD 231 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhhCcHhhhCCCCCHHHHhcCCcccCCCc-hhhcCCCCCcceEEEEecHHHHHHhcC
Confidence 0010 011100 11211 234556899999999999999999876
Q ss_pred eEeEEEEeEEeeCCCCCCCC-CCC-CcHHHHHHHHHHHHHh
Q 018905 310 KIYAEVRGYGMSGDAHHITQ-PHI-DGKGAILAMTRALKQA 348 (349)
Q Consensus 310 ~~~a~i~g~~~~~d~~~~~~-p~~-~g~~~~~a~~~Al~~A 348 (349)
++ ++|.|++..++..++.. |+. ...+...++++||++|
T Consensus 232 ~~-v~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~a 271 (389)
T PRK06064 232 TP-VWIKASGQASDTIALHDRKDFTTLDAAVVAAEKAYKMA 271 (389)
T ss_pred CC-eEEEEEEEecCcccccccccccccHHHHHHHHHHHHHc
Confidence 65 59999999988776543 222 3456678999999875
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=144.60 Aligned_cols=185 Identities=22% Similarity=0.239 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHC-CCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALHDA-KWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dA-gi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
...|+.+|+++||+++ |+++++|+ .|++|+...... .....+..+...+
T Consensus 31 ~~eLa~~A~~~AL~~a~gl~~~dID-----~vi~g~~~~~~~-------------------------~~~~~ar~~~~~~ 80 (399)
T PRK09052 31 PDDLLAHVLRSAVAQVPGLDPKLIE-----DAIVGCAMPEAE-------------------------QGLNVARIGALLA 80 (399)
T ss_pred HHHHHHHHHHHHHHhccCcCHHHCC-----EEEEEecCCCCC-------------------------CCchHHHHHHHHc
Confidence 4779999999999997 99999998 899997543210 0112233345566
Q ss_pred CCC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH--------HHHHh---------ccc----
Q 018905 208 GFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM--------AGFCK---------SRA---- 264 (349)
Q Consensus 208 gl~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~--------~~~~~---------~~~---- 264 (349)
|+. -|+++|+++|+|++.|+..|+++|++|.+|++||+|+|.+...... ..+.. ++.
T Consensus 81 Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 160 (399)
T PRK09052 81 GLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMSMVPMMGNKPSMSPAIFARDENVGIAYGMGLTAEK 160 (399)
T ss_pred CCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccccCcccCcccccCcchhccCCcccccchHHHHHHH
Confidence 885 3799999999999999999999999999999999999985432100 00000 000
Q ss_pred cccccC------------------CCCCC-----CCC--------------------C----------------------
Q 018905 265 LTTKYN------------------GTPQE-----ASR--------------------P---------------------- 279 (349)
Q Consensus 265 l~~~~~------------------~~~~~-----~~~--------------------p---------------------- 279 (349)
+.++|+ .++.. ... |
T Consensus 161 ~~~~ygitre~~d~~a~~sh~~a~~n~~ag~~~~ei~~~~v~~~~~~~~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p 240 (399)
T PRK09052 161 VAEQWKVSREDQDAFALESHQKAIAAQQAGEFKDEITPYEITERFPDLATGEVDVKTRTVDLDEGPRADTSLEGLAKLKP 240 (399)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeEeccccccccccCcccccceEeccCCCCCCCCCHHHHhcCCC
Confidence 000111 00100 000 1
Q ss_pred -CCC-----CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 280 -FDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 280 -f~~-----~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+. -.|...++|||+++||++++.|+++|.+++++|.|++..+. .|+..+.+...|+++||++|
T Consensus 241 ~f~~~g~lt~~n~s~~~DGAaa~vl~se~~a~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~A~~~al~~A 310 (399)
T PRK09052 241 VFANKGSVTAGNSSQTSDGAGAVILVSEKALKQFNLTPLARFVSFAVAGV-----PPEIMGIGPIEAIPAALKQA 310 (399)
T ss_pred ccCCCCcEECCccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEecc-----CCCccchhHHHHHHHHHHHc
Confidence 110 01224489999999999999999999999999999999865 55556667899999999986
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-16 Score=146.99 Aligned_cols=185 Identities=22% Similarity=0.278 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALHD-AKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~d-Agi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
...|+.+++.++|++ +|+++++|+ .||+|+...... ....++..++...
T Consensus 26 ~~~L~~~a~~~al~r~a~i~~~~Id-----~vi~G~~~~~~~-------------------------~g~~~ar~~~l~~ 75 (400)
T PRK13359 26 ADDLGAVPLKALVERNPDVDWAAID-----DVIYGCANQAGE-------------------------DNRNVARMSLLLA 75 (400)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCC-----EEEEEecccccc-------------------------ccccHHHHHHHHc
Confidence 467889999999994 799999888 899998542210 0124566788888
Q ss_pred CCCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHHHH----HH-------Hhc-----------
Q 018905 208 GFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALSMA----GF-------CKS----------- 262 (349)
Q Consensus 208 gl~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~~~----~~-------~~~----------- 262 (349)
|+.. |.++|+++|+||++|+..|+++|++|++|++||+|+|++.. |+... .+ ...
T Consensus 76 Gl~~~vp~~tV~~~CaSG~~Av~~A~~~I~sG~~divlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (400)
T PRK13359 76 GLPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMSRAPFVMGKAESAFSRQAEIFDTTIGWRFVNPLMK 155 (400)
T ss_pred CCCCCCceEEEeccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCccccccccccccCCcccccccccccccCCccc
Confidence 8864 99999999999999999999999999999999999998654 32000 00 000
Q ss_pred ccc------------ccccC-------------------CCCC-------------------------CCCCC-------
Q 018905 263 RAL------------TTKYN-------------------GTPQ-------------------------EASRP------- 279 (349)
Q Consensus 263 ~~l------------~~~~~-------------------~~~~-------------------------~~~~p------- 279 (349)
... .++|+ ..++ +..||
T Consensus 156 ~~~~~~~mg~~ae~~a~~~gisre~~d~~a~~Sh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~De~~r~~t~e~l~ 235 (400)
T PRK13359 156 QLYGVDSMPETAENVATDYNVSRADQDAFALRSQQKAARAQADGTLAQEIVPVTIPQKKGDPLVVSRDEHPRETTLEALA 235 (400)
T ss_pred cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCccceeeeeeccCCCCceeecCCCCCCCCCHHHHh
Confidence 000 00011 0000 01111
Q ss_pred -----CCCC-----CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 280 -----FDCG-----RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 280 -----f~~~-----~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+.+ .+...++|||+++||++++.|+++|.+++++|.|++.... .|++.+.+...++++||++|
T Consensus 236 ~l~p~f~~~g~lT~~n~~~~~DGAaa~vL~s~e~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~A~~~al~~A 309 (400)
T PRK13359 236 KLKGVVRPDGTVTAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAGV-----EPRVMGIGPAPATQKLLARL 309 (400)
T ss_pred cCCCccCCCCceecccccCccCceEEEEEecHHHHHHCCCCccEEEEEEEEecC-----CCCccchhHHHHHHHHHHHh
Confidence 3321 1222279999999999999999999999999999988752 46666778899999999986
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=144.91 Aligned_cols=185 Identities=24% Similarity=0.334 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+++|+.+++|+ .+++|+..++.. . ...++.+++..+|
T Consensus 27 ~~eLa~~A~~~AL~~ag~~~~dID-----~vi~g~~~~~~~----------------------~---g~~~a~~~~~~lG 76 (391)
T PRK07661 27 PDDLGALVVKETLKRAGNYEGPID-----DLIIGCAMPEAE----------------------Q---GLNMARNIGALAG 76 (391)
T ss_pred HHHHHHHHHHHHHHhcCCChhHCC-----EEEEEecccccc----------------------c---cchHHHHHHHHcC
Confidence 477999999999999988777787 899997542210 0 0123456888899
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH---------------HHHHhccc----ccc
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM---------------AGFCKSRA----LTT 267 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~---------------~~~~~~~~----l~~ 267 (349)
+. -|.++|+++|+||+.|+..|++.|++|.+|++||+|+|.+...... ..+..++. +.+
T Consensus 77 l~~~~p~~~V~~aCaSG~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~m~~~a~~~~~ 156 (391)
T PRK07661 77 LPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMSLVPMMGHVVRPNPRLVEAAPEYYMGMGHTAEQVAV 156 (391)
T ss_pred CCCCcceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEEEEeecccCCccccccCCCccccccccchhhhHHHHHHHHHH
Confidence 97 3999999999999999999999999999999999999975431100 00000110 111
Q ss_pred ccC------------------CCCCC-----C-----------------------------C------------CC-CC-
Q 018905 268 KYN------------------GTPQE-----A-----------------------------S------------RP-FD- 281 (349)
Q Consensus 268 ~~~------------------~~~~~-----~-----------------------------~------------~p-f~- 281 (349)
+|+ .+|.. . . +| |.
T Consensus 157 ~~g~tre~~a~~av~s~~~a~~n~~ag~~~~ei~pi~~~~~~~~~~~~~~~~~~~~~~d~~~rp~~~~e~l~~l~p~f~~ 236 (391)
T PRK07661 157 KYGISREDQDAFAVRSHQRAAKALAEGKFADEIVPVDVTLRTVGENNKLQEETITFSQDEGVRADTTLEILGKLRPAFNV 236 (391)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeeecccccccccCcccccceeEecCCCCCCCCCHHHHhcCCCCcCC
Confidence 111 00000 0 0 11 11
Q ss_pred ----CCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 282 ----CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 282 ----~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
...+...++|||+++||++++.|+++|.+++++|+|++..++ .|...+.+...++++||++|
T Consensus 237 ~g~lt~~~~~~~~DGAaavvl~s~~~A~~~g~~~~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~a 302 (391)
T PRK07661 237 KGSVTAGNSSQMSDGAAAVLLMDREKAESDGLKPLAKFRSFAVAGV-----PPEVMGIGPIAAIPKALKLA 302 (391)
T ss_pred CCCEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecC-----CCcccchHHHHHHHHHHHHc
Confidence 112333389999999999999999999999999999999875 44445567789999999986
|
|
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-15 Score=140.02 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
....|+..|+.+||+++|+++++++ .+++++..... .++ ..+..++..|
T Consensus 94 ~~~~la~~Aa~~aL~~agl~~~~Id-----~li~~~~~~~~---------------------~~p-----~~a~~v~~~L 142 (372)
T PRK07515 94 IQAEMGVAAARQALARAGRTAEDID-----AVIVACSNMQR---------------------AYP-----AMAIEIQQAL 142 (372)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCCC---------------------CCc-----HHHHHHHHhc
Confidence 4568999999999999999988887 78888743211 011 1345788899
Q ss_pred CCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 208 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 208 gl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
|++++++.++.+|+|++.||..|.++|++|.+|.+||+++|.+.... . |.....++
T Consensus 143 gl~~~~~~v~~aCasg~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~-----------~-------------~~d~~~~~ 198 (372)
T PRK07515 143 GIEGFAFDMNVACSSATFGIQTAANAIRSGSARRVLVVNPEICSGHL-----------N-------------FRDRDSHF 198 (372)
T ss_pred CCCCcEEEecchhHHHHHHHHHHHHHHHcCCCCEEEEEeeecccccc-----------c-------------ccCCCCCE
Confidence 99999999999999999999999999999999999999999722110 0 11123579
Q ss_pred eecceeeeEEeCChHHHHhcC-CeEeEEE
Q 018905 288 VIGEGSGVLVLEELEHAKKRG-AKIYAEV 315 (349)
Q Consensus 288 ~~gEGAaalvL~~~~~A~~~g-~~~~a~i 315 (349)
++||||+|+||++.+.+..++ ..+++..
T Consensus 199 lfGDgAaA~vL~~~~~~~~~~~~~il~~~ 227 (372)
T PRK07515 199 IFGDVATAVIVERADTATSAGGFEILGTR 227 (372)
T ss_pred EecCccEEEEEeeccccccCCCceEEEEE
Confidence 999999999999876553322 2455443
|
|
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=143.94 Aligned_cols=185 Identities=23% Similarity=0.292 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+|+|+++++++ .+++|+...+... ...++.+++...|
T Consensus 26 ~~eL~~~a~~~al~~agi~~~~Id-----~v~~G~~~~~~~~-------------------------~~~~ar~~~~~~G 75 (401)
T PRK08131 26 PDDLAATVIRRLLEKSGFPGDDIE-----DVILGCTNQAGED-------------------------SRNVARNALLLAG 75 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccccccc-------------------------cccHHHHHHHhcC
Confidence 377999999999999999999888 8999985422100 0122445777788
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH-H-----------HHHHh-cc-----c----
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-M-----------AGFCK-SR-----A---- 264 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~-~-----------~~~~~-~~-----~---- 264 (349)
+. -|.++|+++|+||+.|+..|++.|++|.+|++||+|+|++..... . ..+.. ++ .
T Consensus 76 lp~~~p~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvlagG~Esms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (401)
T PRK08131 76 LPVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMSRAPFVMGKAESAFSRDAKVFDTTIGARFPNPKIVA 155 (401)
T ss_pred CCCCCceeeeechhhhHHHHHHHHHHHHHCCCCCEEEEEEecCCCCCcccccccccccccCcchhhhhhcccccCccccc
Confidence 85 499999999999999999999999999999999999998543210 0 00000 00 0
Q ss_pred -cc------------cccC---------------------CCC--CCCCCCC-------------CC-------------
Q 018905 265 -LT------------TKYN---------------------GTP--QEASRPF-------------DC------------- 282 (349)
Q Consensus 265 -l~------------~~~~---------------------~~~--~~~~~pf-------------~~------------- 282 (349)
.. ++|+ .++ .....|. +.
T Consensus 156 ~~a~~~mg~~ae~~~~~ygitre~~d~vA~~S~~~~~~a~~~~~~~~~i~pi~v~~~~~~~~~~v~~De~~r~~~~~e~L 235 (401)
T PRK08131 156 QYGNDSMPETGDNVAAEFGISREDADRFAAQSQAKYQAAKEEGFFADEITPIEVPQGRKLPPKLVAEDEHPRPSSTVEAL 235 (401)
T ss_pred ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCCCceeeEEeccccCCCceEEecCCCCCCCCCHHHH
Confidence 00 0111 000 0000111 10
Q ss_pred -------C------CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 283 -------G------RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 283 -------~------~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+ .+...++|||+++||++++.|++++.+++++|.|++...+ .|...+.+...++++||++|
T Consensus 236 ~~l~p~f~~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~~~~p~~~i~g~~~~~~-----~~~~~~~~~~~a~~~a~~~a 309 (401)
T PRK08131 236 TKLKPLFEGGVVTAGNASGINDGAAALLIGSRAAGEKYGLKPMARILSSAAAGV-----EPRIMGIGPVEAIKKALARA 309 (401)
T ss_pred hcCCCCCCCCCccCCcCCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEecc-----CCccccchHHHHHHHHHHHc
Confidence 0 1334489999999999999999999899999999999876 34444567789999999986
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=145.94 Aligned_cols=185 Identities=21% Similarity=0.228 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|++++|+++|+++++|+ .|++|+..+... ....++..++...|
T Consensus 28 ~~dLa~~A~~~al~~agi~p~~ID-----~vi~G~~~~~~~-------------------------~~~~~~r~a~~~~G 77 (402)
T PRK08242 28 PVRLAAGLLEALRDRNGLDTAAVD-----DVVLGCVTPVGD-------------------------QGADIARTAVLAAG 77 (402)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcC-----EEEEEecCCCcc-------------------------ccccHHHHHHHHcC
Confidence 567899999999999999999888 899998653211 01223444556678
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHHH-------H---H----HHhcccccc----
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALSM-------A---G----FCKSRALTT---- 267 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~~-------~---~----~~~~~~l~~---- 267 (349)
+ +-|.++|+++|+|++.||..|.++|++|..|++||+|+|.+.. |+.. . . +..++...+
T Consensus 78 l~~~~pa~~Vn~aCaSg~~Ai~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~mg~~Ae~~a~ 157 (402)
T PRK08242 78 LPETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMSRVPMGSDGGAWAMDPSTNFPTYFVPQGISADLIAT 157 (402)
T ss_pred CCCCCCeEEEcchhhhHHHHHHHHHHHHHcCCCCEEEEEEEEccCCCcccccCcccccCcccccccccCCHHHHHHHHHH
Confidence 7 3499999999999999999999999999999999999998543 2100 0 0 000111110
Q ss_pred ccC-----------------C------------------------CCCCCCC------------C-CCCCC---------
Q 018905 268 KYN-----------------G------------------------TPQEASR------------P-FDCGR--------- 284 (349)
Q Consensus 268 ~~~-----------------~------------------------~~~~~~~------------p-f~~~~--------- 284 (349)
+|+ . +++...| | |+...
T Consensus 158 ~~gisRe~~d~~A~~Sh~~A~~A~~~g~f~~ei~pv~~~~~~~~~~~de~~r~~~t~e~l~~l~p~f~~~~~~~g~~~~~ 237 (402)
T PRK08242 158 KYGFSREDVDAYAVESQQRAAAAWAEGYFAKSVVPVKDQNGLTILDHDEHMRPGTTMESLAKLKPSFAMMGEMGGFDAVA 237 (402)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeecCCCCEeeCCCCCCCCCCCHHHHhCCCCCccCccccCcccccc
Confidence 011 0 1222222 2 43311
Q ss_pred -----------------CcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 018905 285 -----------------DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 347 (349)
Q Consensus 285 -----------------~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~ 347 (349)
|...++|||+++||++++.|+++|.+++++|.|++...+ .|...+.++..++++||++
T Consensus 238 ~~~~~~~~~~~~~vTagn~s~~~DGAaAlvl~s~e~A~~~g~~p~a~I~g~~~~~~-----~~~~~~~~~~~a~~~al~~ 312 (402)
T PRK08242 238 LQKYPEVERINHVHHAGNSSGIVDGAAAVLIGSEEAGKALGLKPRARIVATATIGS-----DPTIMLTGPVPATRKALAK 312 (402)
T ss_pred cccccccccccCceecCcCCCCCCceEEEEEecHHHHHHcCCCCcEEEEEEEEecC-----CchhhcccHHHHHHHHHHH
Confidence 223489999999999999999999999999999998865 3333345567899999987
Q ss_pred h
Q 018905 348 A 348 (349)
Q Consensus 348 A 348 (349)
|
T Consensus 313 A 313 (402)
T PRK08242 313 A 313 (402)
T ss_pred c
Confidence 6
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=144.97 Aligned_cols=185 Identities=22% Similarity=0.272 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHH-HCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALH-DAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~-dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
...|+.+++.++|+ ++|+++++|+ .|++|+..... .....++..++..+
T Consensus 25 ~~~L~~~a~~~al~~~a~i~~~~Id-----~v~~G~~~~~~-------------------------~~~~~~ar~~~~~~ 74 (400)
T TIGR02430 25 ADDLAAVPIKALLARNPQLDWAAID-----DVIYGCANQAG-------------------------EDNRNVARMAALLA 74 (400)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCC-----EEEEEeccccc-------------------------cccccHHHHHHHHc
Confidence 47799999999999 6899998888 89999754211 00123556688889
Q ss_pred CCC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH-----HHH-------Hh-c----------
Q 018905 208 GFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM-----AGF-------CK-S---------- 262 (349)
Q Consensus 208 gl~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~-----~~~-------~~-~---------- 262 (349)
|+. -|.++|+++|+||+.|+..|++.|++|++|++||+|+|++...... ..+ .. .
T Consensus 75 Gl~~~~p~~~V~~~CaSG~~Ai~~a~~~I~sG~~d~~la~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (400)
T TIGR02430 75 GLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMSRAPFVMGKADSAFSRSAKIEDTTIGWRFINPLMK 154 (400)
T ss_pred CCCCCCceEEeechhhhHHHHHHHHHHHHHCCCCCEEEEeccccccCCcccccccccccccccccccccccccccCcccc
Confidence 996 3999999999999999999999999999999999999986532100 000 00 0
Q ss_pred cccc------------cccC--------------------------------------------CCCCCCCC--------
Q 018905 263 RALT------------TKYN--------------------------------------------GTPQEASR-------- 278 (349)
Q Consensus 263 ~~l~------------~~~~--------------------------------------------~~~~~~~~-------- 278 (349)
.... ++|+ .+|+...+
T Consensus 155 ~~~~~~~M~~~ae~~a~~ygisre~~d~~A~~Sh~~a~~a~~~g~~~~ei~pv~vk~~~~~~~~~n~da~~r~~~t~e~l 234 (400)
T TIGR02430 155 ALYGVDSMPETAENVAEEFGISREDQDAFALRSQQRTAAAQASGFFAEEIVPVVIPQKKGEPTVVDQDEHPRPETTLEGL 234 (400)
T ss_pred cccccCcHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeccCCCCceeeCCCCccCCCCCHHHH
Confidence 0000 0000 01111111
Q ss_pred ----C-CCC-----CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 279 ----P-FDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 279 ----p-f~~-----~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
| |+. ..+...++|||+++||+++++|++++.+++++|.|++..+. .|.+.+.+...++++||++|
T Consensus 235 ~~~~~v~~p~g~lt~~~~s~~~DGAaa~vl~s~e~A~~~g~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~al~~A 309 (400)
T TIGR02430 235 AKLKPVVRPDGTVTAGNASGVNDGAAALLLASEEAVQRHGLTPRARILAAATAGV-----EPRIMGIGPVPATQKLLARA 309 (400)
T ss_pred hcCCCcccCCCCEeccccCCcCCceEEEEEecHHHHHHCCCCccEEEEEEEEecC-----CCccccchHHHHHHHHHHHh
Confidence 1 211 12233389999999999999999999999999999988764 34445567789999999876
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=143.66 Aligned_cols=188 Identities=23% Similarity=0.186 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+|+||++++|+ ++++|+...... ...++..++..+|
T Consensus 21 ~~eLa~~A~~~AL~dAgi~~~dID-----~vi~g~~~~~~~--------------------------~~~~a~~v~~~lG 69 (385)
T PRK12578 21 VQELAWESIKEALNDAGVSQTDIE-----LVVVGSTAYRGI--------------------------ELYPAPIVAEYSG 69 (385)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccccc--------------------------cCChHHHHHHHhC
Confidence 467999999999999999999888 899887432100 0123456888899
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH---H--------HHH--hcc-------c-cc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM---A--------GFC--KSR-------A-LT 266 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~---~--------~~~--~~~-------~-l~ 266 (349)
+.+ +.++|+++|+|++.||..|+..|++|.+|.+||+|+|.+...... . .+. ..+ . ..
T Consensus 70 l~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~a 149 (385)
T PRK12578 70 LTGKVPLRVEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGGRGGNYQWEYHFYGTTFPTYYALYA 149 (385)
T ss_pred CCCCCeeEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcccchhhhcccccccccccccCCCChHHHHHHHH
Confidence 976 779999999999999999999999999999999999974321100 0 000 000 0 00
Q ss_pred c----ccC------------------CCCCCC----------------CCCCCCCCCcceecceeeeEEeCChHHHHhcC
Q 018905 267 T----KYN------------------GTPQEA----------------SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRG 308 (349)
Q Consensus 267 ~----~~~------------------~~~~~~----------------~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g 308 (349)
+ +|. .+|... +.|+ ..-+...++|||+++||++++.|++.+
T Consensus 150 ~~~m~~~g~t~e~~a~va~~~~~~A~~np~a~~~~~i~~e~v~~s~~i~~Pl-~~~d~~~~~DGAaA~vl~s~e~A~~l~ 228 (385)
T PRK12578 150 TRHMAVYGTTEEQMALVSVKAHKYGAMNPKAHFQKPVTVEEVLKSRAISWPI-KLLDSCPISDGSATAIFASEEKVKELK 228 (385)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCccCCCc-cHhhcCCcCCCeEEEEEecHHHHHhcC
Confidence 0 000 112111 1121 113444579999999999999999998
Q ss_pred CeEeEEEEeEEeeCCCCCCC-CCCCCc-HHHHHHHHHHHHHh
Q 018905 309 AKIYAEVRGYGMSGDAHHIT-QPHIDG-KGAILAMTRALKQA 348 (349)
Q Consensus 309 ~~~~a~i~g~~~~~d~~~~~-~p~~~g-~~~~~a~~~Al~~A 348 (349)
.+++++|.|++..++..++. .|+... .+...++++||++|
T Consensus 229 ~~~~~~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~A 270 (385)
T PRK12578 229 IDSPVWITGIGYANDYAYVARRGEWVGFKATQLAARQAYNMA 270 (385)
T ss_pred CCCCeEEEEEEEecCcccccccccccccHHHHHHHHHHHHHc
Confidence 66778999999988876653 334333 36678999999876
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=146.24 Aligned_cols=184 Identities=19% Similarity=0.257 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+|+|+++++++ .|++|+..+... ...++..++..+|
T Consensus 26 ~~eLa~~A~~~AL~~agl~~~dID-----~vv~g~~~~~~~--------------------------~~~~a~~va~~~G 74 (404)
T PRK06205 26 AEELAATVIRALVERTGIDPARID-----DVIFGQGYPNGE--------------------------APAIGRVAALDAG 74 (404)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCCC--------------------------CChHHHHHHHHcC
Confidence 477999999999999999999888 899998543221 0123446778889
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH----------------HHHH-----------
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------------MAGF----------- 259 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~----------------~~~~----------- 259 (349)
+. -|.++|+++|+|++.|+..|+++|++|.+|++||+|+|.+..... ...+
T Consensus 75 l~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (404)
T PRK06205 75 LPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMSNVEFYTTDMRWGVRGGGVQLHDRLARGRETAGGRR 154 (404)
T ss_pred CCCCCceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEeeehhhccCcccccccccccccCcchhhhhhccCcccccccc
Confidence 86 389999999999999999999999999999999999997542110 0000
Q ss_pred -H---hcccccc----ccC------------------C--------------------------CCCCCC----------
Q 018905 260 -C---KSRALTT----KYN------------------G--------------------------TPQEAS---------- 277 (349)
Q Consensus 260 -~---~~~~l~~----~~~------------------~--------------------------~~~~~~---------- 277 (349)
. .++...+ +|+ . +|+...
T Consensus 155 ~~~~~~m~~~a~~~~~~~gitre~~~~~Av~sh~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~ 234 (404)
T PRK06205 155 FPVPGGMIETAENLRREYGISREEQDALAVRSHQRAVAAQEAGRFDDEIVPVTVPQRKGDPTVVDRDEHPRADTTLESLA 234 (404)
T ss_pred cCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeEecCCCCCceEeccCCCCCCCCCHHHHh
Confidence 0 0000011 011 0 011111
Q ss_pred --CC-CC--------CCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHH
Q 018905 278 --RP-FD--------CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 346 (349)
Q Consensus 278 --~p-f~--------~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~ 346 (349)
+| |. ...+...++|||+++||++++.|++.+.+++++|.|++...+ .|...+.+...|+++||+
T Consensus 235 ~~~~v~~~~~p~g~lt~~~~~~~~DGAaa~vl~se~~A~~~~~~p~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~ 309 (404)
T PRK06205 235 KLRPIMGKQDPEATVTAGNASGQNDAAAACLVTTEDKAEELGLRPLARLVSWAVAGV-----EPSRMGIGPVPATEKALA 309 (404)
T ss_pred cCCCcCccCCCCCceeCcccCCCCCceeEEEEecHHHHHHCCCCceEEEEEEEEecc-----CCccccccHHHHHHHHHH
Confidence 11 21 112233379999999999999999999999999999998865 233334566899999999
Q ss_pred Hh
Q 018905 347 QA 348 (349)
Q Consensus 347 ~A 348 (349)
+|
T Consensus 310 ~A 311 (404)
T PRK06205 310 RA 311 (404)
T ss_pred Hc
Confidence 86
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-15 Score=142.98 Aligned_cols=184 Identities=27% Similarity=0.391 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+|+|+++++|+ ++++|+..+... .+ ..+..++..+|
T Consensus 22 ~~~La~~A~~~AL~dAgl~~~dID-----~vi~~~~~~~~~-------------------------~~-~~a~~v~~~lG 70 (386)
T cd00751 22 ADDLGAAVIKALLERAGLDPEEVD-----DVIMGNVLQAGE-------------------------GQ-NPARQAALLAG 70 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHCC-----EEEEEeccCCCC-------------------------CC-hHHHHHHHHcC
Confidence 578999999999999999999888 888887543221 01 23456888899
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH-HHH-----HH---------Hhccc-------
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL-SMA-----GF---------CKSRA------- 264 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~-~~~-----~~---------~~~~~------- 264 (349)
+.. |.+.|+++|+|++.+|..|+.+|++|.+|.+||+|+|.+.... ... .+ ...+.
T Consensus 71 l~~~~~~~~v~~~c~s~~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (386)
T cd00751 71 LPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMSRAPYLLPKARRGGRLGLNTLDGMLDDGLTDPFTGL 150 (386)
T ss_pred CCCCCchhhhccccHHHHHHHHHHHHHHHCCCCCeEEEeeeeccccCcccccccccccccCccccccccccccccccCCC
Confidence 974 8999999999999999999999999999999999998742211 000 00 00000
Q ss_pred ----ccc----ccC------------------CC-------------------------CCCCCC------------C-C
Q 018905 265 ----LTT----KYN------------------GT-------------------------PQEASR------------P-F 280 (349)
Q Consensus 265 ----l~~----~~~------------------~~-------------------------~~~~~~------------p-f 280 (349)
..+ +|+ .+ ++...+ | |
T Consensus 151 ~~a~~a~~~~~~yg~tre~la~vav~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~r~~~t~e~v~~s~~i~ 230 (386)
T cd00751 151 SMGITAENVAEKYGISREEQDEFALRSHQRAAAAQEAGRFKDEIVPVEVPGRKGPVVVDRDEGPRPDTTLEKLAKLKPAF 230 (386)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCCCCCc
Confidence 000 000 00 010111 1 1
Q ss_pred C-----CCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 281 D-----CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 281 ~-----~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+ ...+...++|||+++||++++.|++++.+++++|+|++.+++. +.....+...++++||++|
T Consensus 231 ~p~g~l~~~d~~~~~dGaaavvl~s~~~a~~~~~~~~~~I~g~~~~~~~-----~~~~~~~~~~a~~~a~~~A 298 (386)
T cd00751 231 KKDGTVTAGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVD-----PAIMGIGPVPAIPKALKRA 298 (386)
T ss_pred CCCCcEeCCcCCCCCcceEEEEEecHHHHHHCCCCeeEEEEEEEEccCC-----CcccchhHHHHHHHHHHHc
Confidence 1 1123344799999999999999999999999999999998763 3333456689999999876
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=144.16 Aligned_cols=185 Identities=23% Similarity=0.298 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHH-HCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALH-DAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~-dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
...|+.+++.++|+ ++|+++++++ .|++|+...... ....++..++...
T Consensus 26 ~~~L~~~a~~~al~~~agi~~~~Id-----~v~~G~~~~~~~-------------------------~~~~~ar~~~~~~ 75 (401)
T PRK09050 26 ADDLGAVPLKALMARNPGVDWEAVD-----DVIYGCANQAGE-------------------------DNRNVARMSALLA 75 (401)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCC-----EEEEEecccccc-------------------------ccchHHHHHHHHc
Confidence 47799999999998 6899998888 899997542110 0123556688889
Q ss_pred CCC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH-----HHH-------Hh--------c---
Q 018905 208 GFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM-----AGF-------CK--------S--- 262 (349)
Q Consensus 208 gl~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~-----~~~-------~~--------~--- 262 (349)
|+. -|.++|+++|+||+.|+..|+++|++|++|++||+|+|++...... ..+ .. .
T Consensus 76 Gl~~~vP~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (401)
T PRK09050 76 GLPVSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSRAPFVMGKADSAFSRQAEIFDTTIGWRFVNPLMK 155 (401)
T ss_pred CCCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEecccccccCcccccchhhhcccCcccccccccccccCCccc
Confidence 993 4999999999999999999999999999999999999986532100 000 00 0
Q ss_pred cccc------------cccC---------------------CC-----------------------CCCCCC--------
Q 018905 263 RALT------------TKYN---------------------GT-----------------------PQEASR-------- 278 (349)
Q Consensus 263 ~~l~------------~~~~---------------------~~-----------------------~~~~~~-------- 278 (349)
.... ++|+ .+ ++...|
T Consensus 156 ~~~~~~~Mg~~ae~~a~~~gisre~~D~~A~~S~k~a~~A~~ng~~~~ei~p~~~~~~~~~~~~~~~da~~r~~~t~e~l 235 (401)
T PRK09050 156 AQYGVDSMPETAENVAEDYNISRADQDAFALRSQQRAAAAQAAGFLAEEIVPVTIPQKKGDPVVVDRDEHPRPETTLEAL 235 (401)
T ss_pred cccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeeccCCCCceeeCCCCCCCCCCCHHHH
Confidence 0000 1111 01 122222
Q ss_pred ----C-CCCC-----CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 279 ----P-FDCG-----RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 279 ----p-f~~~-----~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
| |+.+ .+...++|||+++||++++.|++++.+++++|+|++..+. .|...+.+...++++||++|
T Consensus 236 ~~l~~~~~~~g~lt~~n~s~~~DGAaa~vl~s~~~A~~lg~~p~a~I~g~~~~~~-----~~~~~~~~~~~a~~~al~~A 310 (401)
T PRK09050 236 AKLKPVFRPDGTVTAGNASGVNDGAAALLLASEAAAKKHGLTPRARILGMATAGV-----EPRIMGIGPAPATRKLLARL 310 (401)
T ss_pred hcCCCcccCCCEEeCCCcCCCcCceEEEEEecHHHHHHCCCCccEEEEEEEEecc-----CCccccchHHHHHHHHHHHc
Confidence 1 2211 2223389999999999999999999999999999998765 34444556788999999876
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-15 Score=140.64 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.++|+|+|+++++|+ .|++|+...... ....++..++...|
T Consensus 26 ~~eL~~~a~~~aL~~agi~~~~Id-----~v~~G~~~~~~~-------------------------q~~~~ar~~~l~~G 75 (387)
T PRK07850 26 AAELLGAVQRAVLDRAGIDPGDVE-----QVIGGCVTQAGE-------------------------QSNNITRTAWLHAG 75 (387)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccccc-------------------------ccchHHHHHHHhCC
Confidence 377999999999999999998888 899997431100 00124445666678
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH-HHHH-------------H--Hhcc----ccc
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL-SMAG-------------F--CKSR----ALT 266 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~-~~~~-------------~--~~~~----~l~ 266 (349)
+. -|.++|+++|+||+.|+..|++.|++|.+|++||+|+|++.... .... + ..++ .+.
T Consensus 76 l~~~~p~~tV~~~CaSG~~A~~~A~~~I~sG~~dvvla~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~~~ 155 (387)
T PRK07850 76 LPYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVPLGANAGPGRGLPRPDSWDIDMPNQFEAAERIA 155 (387)
T ss_pred CCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEEeEecCCCCcccccccccccCccccccccCcchHHHHHHHHH
Confidence 85 39999999999999999999999999999999999999865421 0000 0 0000 000
Q ss_pred cccC------------------C-----------------------CCCCCC--------------------CC-CCC--
Q 018905 267 TKYN------------------G-----------------------TPQEAS--------------------RP-FDC-- 282 (349)
Q Consensus 267 ~~~~------------------~-----------------------~~~~~~--------------------~p-f~~-- 282 (349)
++|+ . +|.+.. +| |..
T Consensus 156 ~~ygisre~~d~~a~~sh~~a~~A~~~g~f~~ei~pv~~~~~~~~~np~~~~~~~~~D~~~r~~t~e~l~~l~p~~~~~~ 235 (387)
T PRK07850 156 KRRGITREDVDAFGLRSQRRAAQAWAEGRFDREISPVQAPVLDEEGQPTGETRLVTRDQGLRDTTMEGLAGLKPVLEGGI 235 (387)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEeecccccccccCCCceEeecCCCcccCCHHHhccCCCCCCCCC
Confidence 0111 0 011110 12 310
Q ss_pred --CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 283 --GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 283 --~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
-.+...++|||+++||.+++.|++.+.+++++|.|++.... .|.....+...++++||++|
T Consensus 236 ~t~~~~~~~sDGAaa~vl~see~A~~l~~~p~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~a 298 (387)
T PRK07850 236 HTAGTSSQISDGAAAVLWMDEDRARALGLRPRARIVAQALVGA-----EPYYHLDGPVQATAKVLEKA 298 (387)
T ss_pred ccchhcCCcCCceEEEEEecHHHHHHcCCCCcEEEEEEEEecc-----CchhhcchHHHHHHHHHHHc
Confidence 01334479999999999999999999888899999987654 23333456688999999876
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=140.12 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHC-CCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALHDA-KWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dA-gi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
...|+.+++.+||+|+ |+++.+|+ ++++|+..... ..+ ..++..++..+
T Consensus 27 ~~eL~~~A~~~AL~da~gl~~~dID-----~vv~g~~~~~~----------------------~~g---~~~~~~~a~~l 76 (406)
T PRK07851 27 PDDLAAQMVRAALDKVPALDPTDID-----DLMLGCGLPGG----------------------EQG---FNMARVVAVLL 76 (406)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCC-----EEEEEcccccc----------------------ccc---CCHHHHHHHHc
Confidence 3779999999999997 99999998 89988632110 000 12345788899
Q ss_pred CCCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH-------------HH---------------H
Q 018905 208 GFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-------------MA---------------G 258 (349)
Q Consensus 208 gl~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~-------------~~---------------~ 258 (349)
|+.+ |+++|+++|+|+..|+..|+++|++|.+|++||+|+|.+..... .. .
T Consensus 77 Gl~~~p~~~v~~~caSG~~av~~Aa~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (406)
T PRK07851 77 GYDFLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETVSRFAKGNSDSLPDTKNPLFAEAQARTAARAEGGAEA 156 (406)
T ss_pred CCCCCCeeeeeccchhHHHHHHHHHHHHHCCCCCEEEEeeEEecccCcccccccccccCchhhhhccccccccccccccc
Confidence 9976 99999999999999999999999999999999999986321100 00 0
Q ss_pred HHh-------------cccccc----ccC---------------------CCC-CC-------------------CCCCC
Q 018905 259 FCK-------------SRALTT----KYN---------------------GTP-QE-------------------ASRPF 280 (349)
Q Consensus 259 ~~~-------------~~~l~~----~~~---------------------~~~-~~-------------------~~~pf 280 (349)
|.. ++..++ +|+ .++ .. ...++
T Consensus 157 ~~~~~g~~~~~~~~~amg~~a~~~~~~yg~~re~~~~~a~~s~~~a~~A~~n~~~a~~~~p~~~p~~~~~~~d~~~r~~~ 236 (406)
T PRK07851 157 WHDPREDGLLPDVYIAMGQTAENVAQLTGISREEQDEWGVRSQNRAEEAIANGFFEREITPVTLPDGTVVSTDDGPRAGT 236 (406)
T ss_pred ccccccccccccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHCCCCccceeeeecCCCceeCCCCCccCCc
Confidence 000 000000 000 011 00 10111
Q ss_pred C------------C-----CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHH
Q 018905 281 D------------C-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343 (349)
Q Consensus 281 ~------------~-----~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~ 343 (349)
+ . ..+...++|||+++||++++.|++++.+++++|.|++...+ .|+..+.+...++++
T Consensus 237 t~e~v~~s~~v~~P~~~lt~~d~~~~~DGaaa~vl~s~e~A~~~~~~~~a~I~g~~~~~~-----~~~~~~~~~~~a~~~ 311 (406)
T PRK07851 237 TYEKVSQLKPVFRPDGTVTAGNACPLNDGAAAVVIMSDTKARELGLTPLARIVSTGVSGL-----SPEIMGLGPVEASKQ 311 (406)
T ss_pred CHHHHhcCCCccCCCCcEecCcCCccCCceeEEEEccHHHHHHcCCCccEEEEEEEEccC-----CCCccchhHHHHHHH
Confidence 1 0 01333479999999999999999999999999999998765 334445567899999
Q ss_pred HHHHh
Q 018905 344 ALKQA 348 (349)
Q Consensus 344 Al~~A 348 (349)
||++|
T Consensus 312 al~~A 316 (406)
T PRK07851 312 ALARA 316 (406)
T ss_pred HHHHh
Confidence 99986
|
|
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=142.88 Aligned_cols=187 Identities=25% Similarity=0.302 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+|+|+++++++ ++++|+...... ...++..++..+|
T Consensus 16 ~~eL~~~A~~~Al~dagl~~~~Id-----~vi~g~~~~~~~--------------------------~~~~a~~va~~lG 64 (375)
T cd00829 16 PLELAAEAARAALDDAGLEPADID-----AVVVGNAAGGRF--------------------------QSFPGALIAEYLG 64 (375)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeccccccc--------------------------ccchHHHHHHHcC
Confidence 578999999999999999988887 888887532210 1235577888999
Q ss_pred CC-CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH-H--H------HHH---hcccc---------c
Q 018905 209 FQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-M--A------GFC---KSRAL---------T 266 (349)
Q Consensus 209 l~-Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~-~--~------~~~---~~~~l---------~ 266 (349)
+. .|.++|+++|+|++.+|..|+.+|++|.+|++||+|+|.+..... . . .+. ..+.+ .
T Consensus 65 l~~~~~~~v~~~c~sg~~al~~Aa~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a 144 (375)
T cd00829 65 LLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAA 144 (375)
T ss_pred CCCcceeeEeCccHHHHHHHHHHHHHHHhCCCCEEEEEEEeecccCcccchhhccccchhhhhcccccCCChHHHHHHHH
Confidence 94 599999999999999999999999999999999999997443210 0 0 000 00000 0
Q ss_pred c----ccC------------------CCCCCC----------------CCCCCCCCCcceecceeeeEEeCChHHHHhcC
Q 018905 267 T----KYN------------------GTPQEA----------------SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRG 308 (349)
Q Consensus 267 ~----~~~------------------~~~~~~----------------~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g 308 (349)
+ +|. .+|... +.|+.. .+...++|||+++||++++.|+++
T Consensus 145 ~~~~~~~g~t~e~~~~va~~~~~~A~~np~A~~~~~~t~d~~~~~~~i~~pl~~-~~~~~~~DGaaa~vl~s~~~a~~~- 222 (375)
T cd00829 145 RRYMHRYGTTREDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPLRL-LDCCPVSDGAAAVVLASEERAREL- 222 (375)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCch-hhcCCCCCceeEEEEecHHHHhhc-
Confidence 0 000 011111 112221 344568999999999999999988
Q ss_pred CeEeEEEEeEEeeCCCCCCCCCCC--CcHHHHHHHHHHHHHh
Q 018905 309 AKIYAEVRGYGMSGDAHHITQPHI--DGKGAILAMTRALKQA 348 (349)
Q Consensus 309 ~~~~a~i~g~~~~~d~~~~~~p~~--~g~~~~~a~~~Al~~A 348 (349)
.+++++|.|++..++..++..++. .+.+...++++||++|
T Consensus 223 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~A 264 (375)
T cd00829 223 TDRPVWILGVGAASDTPSLSERDDFLSLDAARLAARRAYKMA 264 (375)
T ss_pred CCCCeEEEEEEEecCCccccccccccccHHHHHHHHHHHHHc
Confidence 667899999999998877655443 5678889999999986
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-15 Score=141.79 Aligned_cols=185 Identities=18% Similarity=0.269 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+|+|+++++|+ +|++|+...... .....+..++..+|
T Consensus 71 ~~eLa~eA~~~AL~dAgl~~~dID-----~vv~G~~~~~~~-------------------------~~~~~~r~~a~~~G 120 (452)
T PLN02287 71 PDDLLAPVLKAVVEKTGLNPSEVG-----DIVVGTVLAPGS-------------------------QRANECRMAAFYAG 120 (452)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeecCccc-------------------------ccchHHHHHHHHCC
Confidence 478999999999999999999998 899987543211 00122245667789
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH-HHH----H-H---H-------hcccc----c
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL-SMA----G-F---C-------KSRAL----T 266 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~-~~~----~-~---~-------~~~~l----~ 266 (349)
+.. |.++|+++|+|++.|+..|+++|++|.+|++||+|+|.+.... ... . + . .++.. .
T Consensus 121 l~~~~pa~~V~~~CaSG~~Ai~~Aa~~I~sG~~dvvLv~GvE~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~y~ 200 (452)
T PLN02287 121 FPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMTTNPMAWEGGVNPRVESFSQAQDCLLPMGITSENVA 200 (452)
T ss_pred CCCCcceEEEeccCchHHHHHHHHHHHHHcCCCCeEEEEeEEecCCCchhhccccCchhhccccccccCcCHHHHHHHHH
Confidence 864 8899999999999999999999999999999999999854321 000 0 0 0 00000 0
Q ss_pred cccC------------------CCCCC-----CCC-----------------CCCCC-----------------------
Q 018905 267 TKYN------------------GTPQE-----ASR-----------------PFDCG----------------------- 283 (349)
Q Consensus 267 ~~~~------------------~~~~~-----~~~-----------------pf~~~----------------------- 283 (349)
++|+ .+|.. ... .++.|
T Consensus 201 ~~yGitrE~la~vAvksh~nAa~np~ag~f~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~~~e~l~~l~~v~~~~g 280 (452)
T PLN02287 201 ERFGVTREEQDQAAVESHRKAAAATASGKFKDEIVPVHTKIVDPKTGEEKPIVISVDDGIRPNTTLADLAKLKPVFKKNG 280 (452)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeeeeccccccccCCccceeecccCCCCCCCCHHHHhcCCCccCCCC
Confidence 0111 01110 000 11111
Q ss_pred ----CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 284 ----RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 284 ----~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.+...++|||+++||++++.|++++.+|++++.+++.... .|+..+.+...++++||++|
T Consensus 281 ~lt~~~~s~~sDGAaalvl~see~A~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~A~~~al~~A 344 (452)
T PLN02287 281 TTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPILGVFRSFAAVGV-----DPAVMGIGPAVAIPAAVKAA 344 (452)
T ss_pred CEeccccCCcCCceEEEEEeeHHHHHHCCCCeEEEEEEEeeccC-----CCccchHHHHHHHHHHHHHc
Confidence 2333489999999999999999999999999999875432 35556667889999999986
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=137.21 Aligned_cols=185 Identities=22% Similarity=0.286 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALHD-AKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~d-Agi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
...|+.+++.+||++ +|+++++|+ .|++|+...... ++ ..++..+....
T Consensus 25 ~~~L~~~a~~~al~~~agl~~~~Id-----~v~~G~~~~~~~----------------------~g---~~~ar~~~~~~ 74 (385)
T TIGR02445 25 AEDLSAHLMSKLLARNPKVDPAEVE-----DIYWGCVQQTLE----------------------QG---FNIARNAALLA 74 (385)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHcC-----EEEEeccccccc----------------------cc---chHHHHHHHHC
Confidence 478999999999985 699999998 899997531110 00 12444555566
Q ss_pred CCC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH------HHHHh--------ccc----ccc
Q 018905 208 GFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM------AGFCK--------SRA----LTT 267 (349)
Q Consensus 208 gl~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~------~~~~~--------~~~----l~~ 267 (349)
|+. -|+++|+++|+||+.|+..|++.|++|.+|++||+|+|++...... ..+.. ++. +..
T Consensus 75 g~~~~~p~~tV~~~CaSG~~Ai~~Aa~~I~sG~~d~vlagG~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 154 (385)
T TIGR02445 75 QIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMGHVPMMHGVDFHPGMSLHVAKAAGMMGLTAEMLGK 154 (385)
T ss_pred CCCCCcchhhhhhhhHHHHHHHHHHHHHHHCCCCCEEEEeeehhcccCccccCCCcchhHHhhhccccchHHHHHHHHHH
Confidence 664 3789999999999999999999999999999999999985432100 00000 000 000
Q ss_pred ccC--------------------------CC------------------CCCCCCC-------------CCC------CC
Q 018905 268 KYN--------------------------GT------------------PQEASRP-------------FDC------GR 284 (349)
Q Consensus 268 ~~~--------------------------~~------------------~~~~~~p-------------f~~------~~ 284 (349)
+|+ ++ |+...|+ |+. ..
T Consensus 155 ~ygitre~~d~~A~~sh~~a~~a~~~g~f~nei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt~~ 234 (385)
T TIGR02445 155 MHGISREQQDAFAARSHARAHAATQEGKFKNEIIPTQGHDADGFLKQFDYDEVIRPETTVESLAALRPAFDPKNGTVTAG 234 (385)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeeeeccCCCCceeeCCCCCCCCCCCHHHHhcCCceecCCCCceecc
Confidence 011 01 2222221 221 12
Q ss_pred CcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 285 ~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+...++|||+++||++++.|++++.+++++|.|++.+.. .|...+.++..++++||++|
T Consensus 235 ~~~~~sDGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~-----~~~~~~~~~~~a~~~al~~A 293 (385)
T TIGR02445 235 TSSALSDGASAMLVMSEQRANELGLKPRARIRSMAVAGC-----DPSIMGYGPVPATQKALKRA 293 (385)
T ss_pred cCCCcCCceEEEEEecHHHHHHCCCCeeEEEEEEEEcCC-----CCcccchhHHHHHHHHHHHc
Confidence 333479999999999999999999999999999998754 23334456688999999876
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-15 Score=140.43 Aligned_cols=187 Identities=20% Similarity=0.265 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+|+|+++++|+ .+++|+....... +. . . .....+...++
T Consensus 32 ~~~L~~~a~~~AL~~agl~~~dID-----~vi~g~~~~~~~~-----------------~~-~----~-~~~~~l~a~~~ 83 (394)
T PRK06445 32 PEELAAMLINRLIEKTGIKPEEID-----DIITGCALQVGEN-----------------WL-Y----G-GRHPIFLARLP 83 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----eeEEEeecCCCcc-----------------cc-c----H-HHHHHHHcCCC
Confidence 477999999999999999999988 8999985432100 00 0 0 00011222334
Q ss_pred CCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH-----------HHH---H---HH-----hccccc
Q 018905 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL-----------SMA---G---FC-----KSRALT 266 (349)
Q Consensus 209 l~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~-----------~~~---~---~~-----~~~~l~ 266 (349)
..-|+++|+++|+|++.|+..|+++|++|.+|++||+|+|.+.... ... . +. .++...
T Consensus 84 ~~~p~~~V~~~CaSg~~ai~~A~~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a 163 (394)
T PRK06445 84 YNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMTRTPMGDNPHIEPNPKLLTDPKYIEYDLTTGYVMGLTA 163 (394)
T ss_pred CCCcchhhhhhhHHHHHHHHHHHHHHHcCCCCEEEEeeecccccCccccCccccCChhhccccccCcccccCCCCHHHHH
Confidence 4459999999999999999999999999999999999999643211 000 0 00 000000
Q ss_pred ----cccC------------------C-------------------------CCCCCCC------------C-CCC----
Q 018905 267 ----TKYN------------------G-------------------------TPQEASR------------P-FDC---- 282 (349)
Q Consensus 267 ----~~~~------------------~-------------------------~~~~~~~------------p-f~~---- 282 (349)
++|+ . +|+...+ | |+.
T Consensus 164 ~~~~~~ygitre~~a~va~~sh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~npda~~r~~~t~e~~~~~~~v~~~~g~l 243 (394)
T PRK06445 164 EKLAEEAGIKREEMDRWSLRSHQLAAKAIQEGYFKDEILPIEVEVEGKKKVVDVDQSVRPDTSLEKLAKLPPAFKPDGVI 243 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeEEEecCCCCceeeCCCCCCCCCCCHHHHhcCCCccCCCCcE
Confidence 0111 0 2221111 1 110
Q ss_pred -CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 283 -GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 283 -~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
..+...++|||+++||++++.|++++.+++++|.|++..++ .|...+.+...++++||++|
T Consensus 244 t~~~~~~~~DGAaavvl~s~~~A~~~~~~~~a~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~A 305 (394)
T PRK06445 244 TAGNSSPLNSGASYVLLMSKKAVKKYGLKPMAKIRSFGFAGV-----PPAIMGKGPVPASKKALEKA 305 (394)
T ss_pred ecCcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecc-----CCchhcchHHHHHHHHHHHc
Confidence 11233479999999999999999999999999999999875 34444567789999999986
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-15 Score=140.14 Aligned_cols=184 Identities=22% Similarity=0.235 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+++|+++++|+ .|++|+.....+ + ..++..++..+|
T Consensus 26 ~~eLa~~A~~~aL~~agl~~~dID-----~vi~g~~~~~~~-----------------------~---~~~~~~~~~~~G 74 (393)
T PRK08235 26 ATELGGIAIKEALERANVSAEDVE-----EVIMGTVLQGGQ-----------------------G---QIPSRQAARAAG 74 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccCCC-----------------------C---CCHHHHHHHHcC
Confidence 477999999999999999999888 899998542110 0 123335677889
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH-HH------------HHH-------------
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-MA------------GFC------------- 260 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~-~~------------~~~------------- 260 (349)
+. -|.++|+++|+|++.||..|+++|++|.+|++||+|+|.+..... .. .+.
T Consensus 75 l~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLvvG~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK08235 75 IPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSNAPYILPGARWGYRMGDNEVIDLMVADGLTCAFSG 154 (393)
T ss_pred CCCCcceeehhhhhhHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCcccccccccccccCCchhhhhhcccccccccCC
Confidence 84 499999999999999999999999999999999999998543210 00 000
Q ss_pred -hcccccc----ccC------------------C--------------------------CCCCCCCC------------
Q 018905 261 -KSRALTT----KYN------------------G--------------------------TPQEASRP------------ 279 (349)
Q Consensus 261 -~~~~l~~----~~~------------------~--------------------------~~~~~~~p------------ 279 (349)
.++...+ +|+ . +|+...|+
T Consensus 155 ~~~~~~A~~~~~~ygitre~~d~~avksh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~ 234 (393)
T PRK08235 155 VHMGVYGGEVAKELGISREAQDEWAYRSHQRAVSAHEEGRFEEEIVPVTIPQRKGDPIVVAKDEAPRKDTTIEKLAKLKP 234 (393)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeeEecCCCCCceEeCCCCCCCCCCCHHHHhcCCC
Confidence 0000000 111 0 12222221
Q ss_pred -CCC-----CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 280 -FDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 280 -f~~-----~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+. ..+...++|||+++||++++.|++++.+|+++|.|++...+. +.....+...++++||++|
T Consensus 235 v~~p~g~lt~~~~~~~~DGAaa~vl~s~~~A~~~~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~a 304 (393)
T PRK08235 235 VFDKTGTITAGNAPGVNDGAAALVLMSEDRAKQEGRKPLATILAHTAIAVE-----AKDFPRTPGYAINALLEKT 304 (393)
T ss_pred cccCCCcEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEecccC-----hhhhcchHHHHHHHHHHHh
Confidence 111 012233799999999999999999999999999998775432 2112334568999999876
|
|
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=137.93 Aligned_cols=184 Identities=24% Similarity=0.294 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+|+|+++++|+ ++++++...... . + ..+..++..+|
T Consensus 21 ~~~La~~A~~~Al~dAgl~~~dID-----~vv~g~~~~~~~---------------------~----~-~~a~~va~~lG 69 (386)
T TIGR01930 21 AEDLGAAVIKELLERNPLDPELID-----DVIFGNVLQAGE---------------------Q----Q-NIARQAALLAG 69 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCCC---------------------C----C-hHHHHHHHHcC
Confidence 578999999999999999999888 888887432110 0 1 23445777888
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHH-----------H-----H-Hhccc-----
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA-----------G-----F-CKSRA----- 264 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~-----------~-----~-~~~~~----- 264 (349)
+. .|.+.|+++|+|++.+|..|+.+|++|.+|.+||+|+|.+....... . + ...+.
T Consensus 70 l~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (386)
T TIGR01930 70 LPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPYSLPRSRREGVDPGRFELEDQILKDGLTDPLN 149 (386)
T ss_pred CCCCceeeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCccccccccccccccCccccchhhcCcccccccc
Confidence 86 48999999999999999999999999999999999988732211000 0 0 00000
Q ss_pred ------ccc----ccC------------------CC-----------CC---------------CCCCCCC---------
Q 018905 265 ------LTT----KYN------------------GT-----------PQ---------------EASRPFD--------- 281 (349)
Q Consensus 265 ------l~~----~~~------------------~~-----------~~---------------~~~~pf~--------- 281 (349)
..+ +|+ .+ |. ...+|..
T Consensus 150 ~~~~a~~a~~y~~~yG~t~e~la~vav~~~~~A~~n~~~g~~~~~i~P~a~~~~~~~~~~~~da~~r~~~t~e~v~~s~~ 229 (386)
T TIGR01930 150 GLSMGLTAENLAKKYGISREEQDEYALRSHQRAAKAWEEGLFKDEIVPVSVKGRKGPVTVSTDEGIRPNTTLEKLAKLKP 229 (386)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCCCC
Confidence 000 000 00 21 0111111
Q ss_pred ---C-----CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 282 ---C-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 282 ---~-----~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
. ..+...++|||+++||++++.|++++.+|+++|.|++.++. .|++.+.+...++++||++|
T Consensus 230 i~~P~~~l~~~d~~~~~dGAaa~vl~s~~~A~~~~~~~~~~i~g~g~~~~-----~~~~~~~~~~~a~~~a~~~A 299 (386)
T TIGR01930 230 AFDPNGTVTAGNSSPLNDGAAALLLMSEERAKELGLTPLARIVSFAVAGV-----DPEIMGLGPVPAIPKALKKA 299 (386)
T ss_pred CcCCCCeeeCCccCCCCcceeEEEEecHHHHHHCCCCccEEEEEEEEecC-----CCccccccHHHHHHHHHHHc
Confidence 0 12233369999999999999999999999999999998864 33434445678999999876
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=133.71 Aligned_cols=120 Identities=23% Similarity=0.292 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
....|+..|+++||++||+++++|+ -++++|+.+... ....|..|...|
T Consensus 51 ~~s~la~~Aa~~AL~~Agi~~~dID-----lII~aT~tpd~~--------------------------~Ps~A~~vq~~L 99 (323)
T COG0332 51 TTSDLAVEAARKALEDAGISPDDID-----LIIVATSTPDHL--------------------------FPSTACLVQARL 99 (323)
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCcccC--------------------------CChHHHHHHHHh
Confidence 3677999999999999999999998 888888654321 235677899999
Q ss_pred CCCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 208 GFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 208 gl~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
|+++ +.+-+..+|+++++||..|..+|++|.++.+||+|.|.+..... |..+...
T Consensus 100 G~~~~~afDl~aaCsgf~yaL~~A~~~i~sG~~k~vLVVg~e~~S~~ld------------------------~~dR~t~ 155 (323)
T COG0332 100 GLGGAPAFDLQAACSGFLYALSVADGLIRSGGYKNVLVVGAETLSRILD------------------------WTDRDTC 155 (323)
T ss_pred CCCCcceeechhhhHHHHHHHHHHHHHHHcCCCCEEEEEehhHhhccCC------------------------Hhhccce
Confidence 9988 99999999999999999999999999999999999998311111 2233467
Q ss_pred ceecceeeeEEeCChH
Q 018905 287 FVIGEGSGVLVLEELE 302 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~ 302 (349)
+.+||||+|+||++.+
T Consensus 156 vlFgDGAgAvvl~~~~ 171 (323)
T COG0332 156 VLFGDGAGAVVLEATE 171 (323)
T ss_pred EEEcCCceEEEEecCC
Confidence 8899999999999876
|
|
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=135.74 Aligned_cols=185 Identities=23% Similarity=0.289 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALHD-AKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~d-Agi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
...|+..++++||++ +|+++++++ .+++|+...... ....++.+++...
T Consensus 27 ~~~L~~~~~~~al~~~agl~~~~Id-----~vi~g~~~~~~~-------------------------~g~~~ar~~~~~~ 76 (387)
T PRK08947 27 AEDLSAHLMRSLLARNPALDPAEID-----DIIWGCVQQTLE-------------------------QGFNIARNAALLA 76 (387)
T ss_pred HHHHHHHHHHHHHHhccCcChHHhC-----eEEEEecccccc-------------------------ccccHHHHHHHHc
Confidence 377889999999995 899998888 899997431110 0012344577778
Q ss_pred CCCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH------HHHH--------hccc----ccc
Q 018905 208 GFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM------AGFC--------KSRA----LTT 267 (349)
Q Consensus 208 gl~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~------~~~~--------~~~~----l~~ 267 (349)
|+.. |.++|+++|+||+.|+..|+++|++|.+|++||+|+|++...... ..+. .++. +.+
T Consensus 77 Gl~~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~d~vlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 156 (387)
T PRK08947 77 GIPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMGHVPMNHGVDFHPGLSKNVAKAAGMMGLTAEMLGK 156 (387)
T ss_pred CCCCCCcceeeechhHHHHHHHHHHHHHHHCCCCCEEEEccccccccCccccccCcchhhhhhccccchHHHHHHHHHHH
Confidence 8863 889999999999999999999999999999999999985432100 0000 0000 000
Q ss_pred ccC------------------C--------------------------CCCCCCC------------C-CCC------CC
Q 018905 268 KYN------------------G--------------------------TPQEASR------------P-FDC------GR 284 (349)
Q Consensus 268 ~~~------------------~--------------------------~~~~~~~------------p-f~~------~~ 284 (349)
+|+ . +++...| | |+. ..
T Consensus 157 ~ygisre~~~~~avksh~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt~~ 236 (387)
T PRK08947 157 MHGISREQQDAFAARSHQRAWAATQEGRFKNEIIPTEGHDADGVLKLFDYDEVIRPETTVEALAALRPAFDPVNGTVTAG 236 (387)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeeeeecCCCCCceeecCCCCCcCCCCHHHHhcCCceeeCCCCcEEcc
Confidence 011 0 0121111 1 111 12
Q ss_pred CcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 285 DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 285 ~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+...++|||+++||++++.|++.+.+++++|.|++.++.. +...+.+...++++||++|
T Consensus 237 ~~~~~sDGAaAvvl~s~~~A~~~g~~p~~~I~g~~~~~~~-----~~~~~~~~~~a~~~al~~A 295 (387)
T PRK08947 237 TSSALSDGASAMLVMSESRAKELGLKPRARIRSMAVAGCD-----PSIMGYGPVPATQKALKRA 295 (387)
T ss_pred ccCCcCCceEEEEEccHHHHHHCCCCccEEEEEEEEcCcC-----cccccccHHHHHHHHHHHc
Confidence 3344799999999999999999999999999999998542 2223334578899999875
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-14 Score=134.48 Aligned_cols=184 Identities=19% Similarity=0.214 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+++|+++++|+ .|++|+...... ...++...+..+|
T Consensus 31 ~~eL~~~a~~~aL~~Agi~~~dID-----~vi~G~~~~~~~--------------------------~~~~~~~~~l~ag 79 (397)
T PRK06954 31 APQLGAAAIAAAVERAGLKPEQID-----EVVMGCVLPAGQ--------------------------GQAPARQAALGAG 79 (397)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcC-----EEEEEecCCCcc--------------------------chHHHHHHHHcCC
Confidence 478999999999999999999888 899997542211 0112233344455
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHH---------------HHHH--Hhc-cc---
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALS---------------MAGF--CKS-RA--- 264 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~---------------~~~~--~~~-~~--- 264 (349)
+ +-|.++|+++|+||+.|+..|+++|++|.+|++||+|+|.+.. +.. ...+ ... ..
T Consensus 80 ~~~~~p~~~V~~aCaSG~~Av~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (397)
T PRK06954 80 LPLSVGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESMTNAPYLLPKARGGMRMGHGQVLDHMFLDGLEDAYDK 159 (397)
T ss_pred CCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEeeeccCCCcccCcccccccccCcchhhhhhccccccccccc
Confidence 5 3488999999999999999999999999999999999998542 210 0000 000 00
Q ss_pred ----------cccccC------------------C-CCCCCC----CCCC------------------------------
Q 018905 265 ----------LTTKYN------------------G-TPQEAS----RPFD------------------------------ 281 (349)
Q Consensus 265 ----------l~~~~~------------------~-~~~~~~----~pf~------------------------------ 281 (349)
+.++|+ . ++.+.. .|+.
T Consensus 160 ~~~~~~~a~~~~~~ygitre~~d~~A~~s~~~a~~a~~~~~~~~~~~pv~v~~~~~~~~v~~D~~pr~~~~~~l~~l~~~ 239 (397)
T PRK06954 160 GRLMGTFAEECAGEYGFTREAQDAFAIESLARAKRANEDGSFAWEIAPVTVAGKKGDTVIDRDEQPFKANPEKIPTLKPA 239 (397)
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeEEeccCCCCeEeccCCCcCCCCHHHHhCCCCc
Confidence 000111 0 011111 1221
Q ss_pred --C-----CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 282 --C-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 282 --~-----~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
. ..+...++|||+++||++++.|++++.+++++|.|++.... .|.....+...++++||++|
T Consensus 240 f~~~g~lt~~~~~~~~DGAaa~vl~s~~~a~~~~~~p~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~a 308 (397)
T PRK06954 240 FSKTGTVTAANSSSISDGAAALVMMRASTAKRLGLAPLARVVGHSTFAQ-----APSKFTTAPVGAIRKLFEKN 308 (397)
T ss_pred cCCCCcEEccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEeccc-----CcccccchHHHHHHHHHHHc
Confidence 1 01123379999999999999999999999999998876543 23333446688999999876
|
|
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=136.67 Aligned_cols=189 Identities=19% Similarity=0.112 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+|+|+++.+++ ++++++...... + ....+..++..+|
T Consensus 29 ~~~L~~~A~~~Al~dagl~~~dID-----~~i~~~~~~~~~-----------------------~--~~~~a~~l~~~lG 78 (392)
T PRK06065 29 PQELAWEAASKALDEAGLELKDID-----CVVIGSAPDAFD-----------------------G--VHMKGEYLSHGSG 78 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeccCCccc-----------------------c--cccHHHHHHHHcC
Confidence 467999999999999999999888 888875211110 0 0124456788888
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCCh----HHHH------HHH-hcc--------cccc-
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA----LSMA------GFC-KSR--------ALTT- 267 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~----~~~~------~~~-~~~--------~l~~- 267 (349)
+.+ |.+.|+++|+|+..+|..|+.+|++|.+|.|||+|+|.+... .... .+. ..+ .+.+
T Consensus 79 ~~~~~~~~V~~~gasG~~al~~A~~~I~sG~ad~vLVvg~e~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~Al~a~r 158 (392)
T PRK06065 79 GIRKPVSRVYVGGATGVMTAIAGWYHVASGLCQKVLAVAEEKMSPARPHPQAVFRYIWDPILEKPLNPNLIWIFAMEMHR 158 (392)
T ss_pred CCCCCeEEEecCchhHHHHHHHHHHHHhCCCCCEEEEEEeecccccccchhHHHhhhccchhccCCCccHHHHHHHHHHH
Confidence 874 999999999999999999999999999999999999874211 0000 000 000 0000
Q ss_pred ---ccC------------CCCCCCCCCCCCC---------------------CCcceecceeeeEEeCChHHHHhcCCeE
Q 018905 268 ---KYN------------GTPQEASRPFDCG---------------------RDGFVIGEGSGVLVLEELEHAKKRGAKI 311 (349)
Q Consensus 268 ---~~~------------~~~~~~~~pf~~~---------------------~~G~~~gEGAaalvL~~~~~A~~~g~~~ 311 (349)
+|. ...+....|+... -+...++|||+++||.+++.|++.+.++
T Consensus 159 ym~~yG~~~e~lA~vav~~~~~A~~NP~A~~r~~lt~e~vl~s~~ia~Pl~l~d~~~~~DGAaA~vl~s~e~A~~l~~~~ 238 (392)
T PRK06065 159 YMATYGIKKEEIALVSVKNKRNALNNPYAQLGSKITVEDVLKSEVLVWPVQLLDVSPVSDGAAAIVLASEDLARRYTDTP 238 (392)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhhccCchhhhcCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEeCHHHHHhcCCCC
Confidence 000 0011111121111 1233479999999999999999888766
Q ss_pred eEEEEeEEeeCCCCCCCCCC-CCcHHHHHHHHHHHHHh
Q 018905 312 YAEVRGYGMSGDAHHITQPH-IDGKGAILAMTRALKQA 348 (349)
Q Consensus 312 ~a~i~g~~~~~d~~~~~~p~-~~g~~~~~a~~~Al~~A 348 (349)
.+|.|++...+..+....+ ....+...++++||++|
T Consensus 239 -v~I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~a 275 (392)
T PRK06065 239 -VWVEGVGWTLDNTEWPNRDLAYPRYVEFAARMAYKMA 275 (392)
T ss_pred -EEEEEEEEecCccccccccccccHHHHHHHHHHHHHc
Confidence 5699999877654432222 22345578999999876
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=137.28 Aligned_cols=190 Identities=19% Similarity=0.154 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+|||+++.+|+ ++++++. .+. +.+. ..++..++..+|
T Consensus 24 ~~eL~~eAa~~Al~dAgl~~~dID-----~iv~~~~-~~~----------------------~~~~--~~~~~~va~~LG 73 (386)
T PRK08313 24 MAGLVREAIDRALADAGLTWDDID-----AVVVGKA-PDF----------------------FEGV--MMPELFLADALG 73 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEecc-ccc----------------------cccc--cCchHHHHHhcC
Confidence 367999999999999999999888 8888862 111 0000 012246888999
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH--------------------H------HHHHh
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS--------------------M------AGFCK 261 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~--------------------~------~~~~~ 261 (349)
+++ |.+.|+++|+|+..++..|+..|++|.+|.|||+|+|.+.+... . .++..
T Consensus 74 l~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLVvg~e~~s~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~ym~~ 153 (386)
T PRK08313 74 ATGKPLIRVHTAGSVGGSTAVVAASLVQSGVYRRVLAVAWEKQSESNAMWALSIPVPFTKPVGAGAGGYFAPHVRAYIRR 153 (386)
T ss_pred CCCCceEEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEccCCccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 976 88999999999999999999999999999999999986432100 0 00111
Q ss_pred ccccccccC-----------CCCCCCC-CC-CCC--------------CCCcceecceeeeEEeCChHHHHhcCCeEeEE
Q 018905 262 SRALTTKYN-----------GTPQEAS-RP-FDC--------------GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAE 314 (349)
Q Consensus 262 ~~~l~~~~~-----------~~~~~~~-~p-f~~--------------~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~ 314 (349)
.|...+++. .+|.... +| ++. .-+...++|||+++||.+++.|++.+.++.++
T Consensus 154 ~G~~~e~la~vav~~~~~A~~NP~A~~r~~~~t~e~v~~s~~ia~Pl~~~d~~~~~DGAaAvvl~s~e~a~~l~~~~~~~ 233 (386)
T PRK08313 154 SGAPEHIGAMVAVKDRLNGAKNPYAHLHQPDITLEKVMASQMLWDPIRFDETCPSSDGACAVVIGDEEAADAAAGRPVAW 233 (386)
T ss_pred HCcCHHHHHHHHHHHHHHHccCcHHhcCCCCCCHHHHhcCCcccCCCchhccCCCCCceEEEEEecHHHHHhcCCCCCeE
Confidence 111111000 1222111 11 221 12344479999999999999999887777789
Q ss_pred EEeEEeeCCCCCCCCC-CCCcHHHHHHHHHHHHHh
Q 018905 315 VRGYGMSGDAHHITQP-HIDGKGAILAMTRALKQA 348 (349)
Q Consensus 315 i~g~~~~~d~~~~~~p-~~~g~~~~~a~~~Al~~A 348 (349)
|+|++..++..++... .....+...++++||++|
T Consensus 234 I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~A 268 (386)
T PRK08313 234 IHGTAMRTEPLAFAGRDQVNPQAGRDAAAALWKAA 268 (386)
T ss_pred EEEEEEEecCcccccccccccHHHHHHHHHHHHHc
Confidence 9999998876554332 233466778999999886
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-15 Score=140.68 Aligned_cols=184 Identities=22% Similarity=0.285 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+|+||++++|+ ++++|+...... ...++..++..+|
T Consensus 26 ~~~L~~~a~~~al~dagi~~~dID-----~vi~g~~~~~~~--------------------------~~~~a~~~~~~~G 74 (388)
T PRK06366 26 APQLGGAAIKAVIDDAKLDPALVQ-----EVIMGNVIQAGV--------------------------GQNPAGQAAYHAG 74 (388)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCCc--------------------------cCcHHHHHHHHCC
Confidence 477999999999999999999998 999997532110 0112456778899
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH-----H--H---------HHHh----c----
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-----M--A---------GFCK----S---- 262 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~-----~--~---------~~~~----~---- 262 (349)
+.. |.++|+++|+||+.|+..|+++|++|.+|++||+|+|++..... . . .+.. .
T Consensus 75 l~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vla~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 154 (388)
T PRK06366 75 LPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMSNAPFLLPSDLRWGPKHLLHKNYKIDDAMLVDGLID 154 (388)
T ss_pred CCCCCcceeeechhhHHHHHHHHHHHHHhcCCCCEEEEEeeEccccCcccccccccccccccccccchhhhhhcccCccc
Confidence 964 99999999999999999999999999999999999997442100 0 0 0000 0
Q ss_pred -------ccccc----ccC------------------CCCCC-CC----CCC------------------------CC--
Q 018905 263 -------RALTT----KYN------------------GTPQE-AS----RPF------------------------DC-- 282 (349)
Q Consensus 263 -------~~l~~----~~~------------------~~~~~-~~----~pf------------------------~~-- 282 (349)
+...+ +|+ .+|.. .. .|| +.
T Consensus 155 ~~~~~~mal~A~~~~~~yGitrE~~a~vAv~s~~~A~~np~ag~~~~ei~p~~~~~~d~~~r~~t~e~~~~s~~v~~p~g 234 (388)
T PRK06366 155 AFYFEHMGVSAERTARKYGITREMADEYSVQSYERAIRATESGEFRNEIVPFNDLDRDEGIRKTTMEDLAKLPPAFDKNG 234 (388)
T ss_pred cccCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhHhcCCcccccccccccccccCcccCCHHHHhhCCCccCCCC
Confidence 00011 011 11221 11 111 11
Q ss_pred ---CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 283 ---GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 283 ---~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
..+...++|||+++||.+++.|++.+.++.++|+|++..+. .|.....+...|++++|++|
T Consensus 235 ~lt~~d~s~~sDGAaAvvl~See~A~~l~~~pv~~I~g~~~~~~-----~~~~~~~~~~~A~~~al~~A 298 (388)
T PRK06366 235 ILTAGNSAQLSDGGSALVMASEKAINEYGLKPIARITGYESASL-----DPLDFVEAPIPATRKLLEKQ 298 (388)
T ss_pred CEehhhcCCcccceeEEEEecHHHHHHcCCCcCEEEEEEEEEec-----CHHHhcccHHHHHHHHHHHc
Confidence 01223379999999999999999999888889999999865 22222334478999999986
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=137.52 Aligned_cols=184 Identities=25% Similarity=0.372 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+|+|+++++|+ ++++|+...... ...++..+...+|
T Consensus 26 ~~~La~~A~~~AL~dAgl~~~dID-----~vi~g~~~~~~~--------------------------~~~~~~~~~~~~g 74 (393)
T PRK05790 26 AVELGAIVIKAALERAGVPPEQVD-----EVIMGQVLQAGA--------------------------GQNPARQAALKAG 74 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----eEEEEEecCCCC--------------------------CCcHHHHHHHHcC
Confidence 477999999999999999999988 888887532100 0012222445567
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH---------------H-HHH--H--------
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS---------------M-AGF--C-------- 260 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~---------------~-~~~--~-------- 260 (349)
+. .|.++|+++|+|++.||..|+.+|++|.+|++||+|+|.+..... . ..+ .
T Consensus 75 l~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK05790 75 LPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESMSQAPHVLPGSRWGQKMGDVELVDTMIHDGLTDAFNG 154 (393)
T ss_pred CCCCCceeeecccchHHHHHHHHHHHHHHcCCCCEEEEEeeeccccCcccccccccccccCcchhhhhhcccccccccCC
Confidence 74 489999999999999999999999999999999999997422110 0 000 0
Q ss_pred -hccccccc----cC------------------C---C--------C---------------CCCC------CC------
Q 018905 261 -KSRALTTK----YN------------------G---T--------P---------------QEAS------RP------ 279 (349)
Q Consensus 261 -~~~~l~~~----~~------------------~---~--------~---------------~~~~------~p------ 279 (349)
.++...++ |+ . . | +... .|
T Consensus 155 ~~~a~~a~~y~~~yG~tre~la~vav~~~~~A~~~~~~g~~~~~i~P~~~~~~~~~~~~~~~d~~~~~~~~~e~l~~~~~ 234 (393)
T PRK05790 155 YHMGITAENLAEQYGITREEQDEFALASQQKAEAAIKAGRFKDEIVPVTIKQRKGDPVVVDTDEHPRPDTTAESLAKLRP 234 (393)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeeEEecCCCCCceEecCCCCCCCCCCHHHHhCCCC
Confidence 00000000 00 0 0 0 0000 01
Q ss_pred -CCCC-----CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 280 -FDCG-----RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 280 -f~~~-----~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+.. .+...++|||+++||++++.|++++.+++++|.|++.++. .|+..+.+...++++||++|
T Consensus 235 v~~~~g~lt~~d~~~~~DGAaavvl~s~e~a~~~~~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~a~~~A 304 (393)
T PRK05790 235 AFDKDGTVTAGNASGINDGAAAVVVMSEAKAKELGLTPLARIVSYAVAGV-----DPAIMGIGPVPAIRKALEKA 304 (393)
T ss_pred ccCCCCCEeCCcCCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEccC-----CCCccchhHHHHHHHHHHHc
Confidence 1110 1344589999999999999999999999999999999864 34444556688999999986
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-14 Score=135.14 Aligned_cols=189 Identities=21% Similarity=0.244 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+|+|+++++|+ +|++|+..++... . .. .... .+...++
T Consensus 22 ~~eL~~eA~~~AL~dAgl~~~dId-----~vi~g~~~~~~~~-----------------~-~~----~~~~--~~~~~~g 72 (389)
T PRK07516 22 LESLIVRVAREALAHAGIAAGDVD-----GIFLGHFNAGFSP-----------------Q-DF----PASL--VLQADPA 72 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEecCCccc-----------------c-cc----chhH--HHHHhcC
Confidence 467999999999999999998888 8999875322100 0 00 0011 1223346
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH-H-H------H-----------HH-hcccccc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-M-A------G-----------FC-KSRALTT 267 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~-~-~------~-----------~~-~~~~l~~ 267 (349)
++. |.++|+++|+|++.||..|+++|++|.+|.+||+|+|.+..... . . . +. .++...+
T Consensus 73 l~~~p~~~v~~~CaSg~~Al~~A~~~I~sG~~d~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~ 152 (389)
T PRK07516 73 LRFKPATRVENACATGSAAVYAALDAIEAGRARIVLVVGAEKMTATPTAEVGDILLGASYLKEEGDTPGGFAGVFGRIAQ 152 (389)
T ss_pred CCCCceeeeccccHHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCcchhhHHHhhhccccccccccCCCcHHHHHHHHH
Confidence 644 89999999999999999999999999999999999998543211 0 0 0 00 0000000
Q ss_pred ----ccC------------------CCCCCC-CCCCCC------------------CCCcceecceeeeEEeCChHHHHh
Q 018905 268 ----KYN------------------GTPQEA-SRPFDC------------------GRDGFVIGEGSGVLVLEELEHAKK 306 (349)
Q Consensus 268 ----~~~------------------~~~~~~-~~pf~~------------------~~~G~~~gEGAaalvL~~~~~A~~ 306 (349)
+|+ .+|... .+|++. ..+...++|||+++||++++.|++
T Consensus 153 ~y~~~yg~~~e~~a~vav~~~~~A~~nP~A~~~~~~t~~~~~~~~~~~~~i~~pl~~~d~~~~~DGAaa~il~s~~~a~~ 232 (389)
T PRK07516 153 AYFQRYGDQSDALAMIAAKNHANGVANPYAQMRKDLGFEFCRTVSEKNPLVAGPLRRTDCSLVSDGAAALVLADAETARA 232 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhcCChhhcCCcccHHhhhhhhhcCCcccCCCchhhcCCcCcceEEEEEecHHHHHh
Confidence 011 112110 111111 134445799999999999999998
Q ss_pred cCCeEeEEEEeEEeeCCCCCCCCCCC-CcHHHHHHHHHHHHHh
Q 018905 307 RGAKIYAEVRGYGMSGDAHHITQPHI-DGKGAILAMTRALKQA 348 (349)
Q Consensus 307 ~g~~~~a~i~g~~~~~d~~~~~~p~~-~g~~~~~a~~~Al~~A 348 (349)
.+. +++|.|++..++..++...++ ...+...++++||++|
T Consensus 233 ~~~--~v~i~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~a 273 (389)
T PRK07516 233 LQR--AVRFRARAHVNDFLPLSRRDPLAFEGPRRAWQRALAQA 273 (389)
T ss_pred cCC--CEEEEEEEeccCcccccCCCccccHHHHHHHHHHHHHc
Confidence 854 478999999988766544443 3467788999999986
|
|
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=136.30 Aligned_cols=187 Identities=20% Similarity=0.177 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
...+|+.+|+.+||+|+|+++++++ ++++|+..+... ....+...+
T Consensus 21 ~~~~La~~A~~~Al~dAGl~~~dID-----~~~~g~~~~~~~-----------------------------~~~~~~~~l 66 (391)
T PRK08256 21 DYPDMAAEAGRAALADAGIDYDAVQ-----QAYVGYVYGDST-----------------------------SGQRALYEV 66 (391)
T ss_pred CHHHHHHHHHHHHHHHcCCChHHCC-----eeEEEEEeCCcc-----------------------------hhHHHHHHc
Confidence 3578999999999999999988886 566665332110 001244568
Q ss_pred CCCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHH---------HHHHH-------h--------
Q 018905 208 GFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALS---------MAGFC-------K-------- 261 (349)
Q Consensus 208 gl~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~---------~~~~~-------~-------- 261 (349)
|+.+ |.++|+++|+|++.||..|+++|++|++|++||+|+|.+.. +.. ...+. .
T Consensus 67 Gl~~~~~~~v~~~caSg~~ai~~A~~~I~sG~~d~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (391)
T PRK08256 67 GMTGIPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQPGALGSVWDDRPSPLERFDKALAELQGFDPAPPAL 146 (391)
T ss_pred CCCCCCCcccccccHHHHHHHHHHHHHHHCCCCCEEEEEEEeeccccccccccccccchhhhhhhhhhhhcccccCCccH
Confidence 9988 99999999999999999999999999999999999998431 110 00000 0
Q ss_pred --cccccc----ccC------------------CCCCCCC-CCCCC--------------CCCcceecceeeeEEeCChH
Q 018905 262 --SRALTT----KYN------------------GTPQEAS-RPFDC--------------GRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 262 --~~~l~~----~~~------------------~~~~~~~-~pf~~--------------~~~G~~~gEGAaalvL~~~~ 302 (349)
++...+ +|+ .+|.... .|.+. .-+...++|||+++||.+++
T Consensus 147 ~~~a~~a~~y~~~~G~t~e~~a~vav~~~~~A~~np~A~~~~~~t~e~~~~s~~i~~Pl~~~d~~~~~DGAaA~il~s~~ 226 (391)
T PRK08256 147 RMFGGAGREHMEKYGTTAETFAKIGVKARRHAANNPYAQFRDEYTLEDVLASPMIWGPLTRLQCCPPTCGAAAAIVCSEE 226 (391)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhcCCCCCHHHHhcCCcccCCCcHhhcCCCCCCeEEEEEecHH
Confidence 000000 010 1121111 11110 12233479999999999999
Q ss_pred HHHhcCCeEeEEEEeEEeeCCCCCCCC----CCCC-cHHHHHHHHHHHHHh
Q 018905 303 HAKKRGAKIYAEVRGYGMSGDAHHITQ----PHID-GKGAILAMTRALKQA 348 (349)
Q Consensus 303 ~A~~~g~~~~a~i~g~~~~~d~~~~~~----p~~~-g~~~~~a~~~Al~~A 348 (349)
.|++.+.+++++|.|++...+...... ++.. ..+...++++||++|
T Consensus 227 ~a~~~~~~~~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~a 277 (391)
T PRK08256 227 FARKHGLDRAVEIVAQAMTTDTPSTFDGRSMIDLVGYDMTRAAAQQVYEQA 277 (391)
T ss_pred HHHhcCCCCCEEEEEEEEeccccccccccccccccccHHHHHHHHHHHHHc
Confidence 999887677899999988877443211 1112 234568999999875
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-14 Score=135.55 Aligned_cols=92 Identities=25% Similarity=0.398 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+|+|+++++|+ +|++|+...... . ..++..++..+|
T Consensus 27 ~~~L~~~A~~~Al~dAgl~~~dID-----~vi~g~~~~~~~-------------------------~-~~~a~~v~~~lG 75 (426)
T PRK08170 27 ASDLAVAAGRALLNRQPFAPDDLD-----EVILGCAMPSPD-------------------------E-ANIARVVALRLG 75 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCCC-------------------------c-ChHHHHHHHHhC
Confidence 477999999999999999999998 899987532100 0 134456788899
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
+.. |.++|+++|+|++.++..|+++|++|.+|++||+|+|.+.
T Consensus 76 l~~~~p~~~v~~~CaSg~~al~~A~~~I~sG~~d~vLv~G~E~ms 120 (426)
T PRK08170 76 CGEKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMS 120 (426)
T ss_pred cCCCceeeeccchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccc
Confidence 953 9999999999999999999999999999999999999743
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=132.67 Aligned_cols=92 Identities=26% Similarity=0.258 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+|+|+++++|+ +|++|+...... + . .++..++..+|
T Consensus 25 ~~~L~~~a~~~al~dAgl~~~~ID-----~vv~g~~~~~~~-----------------------~--~-~~~~~~~~~~G 73 (394)
T PLN02644 25 ATELGSIAIQAALERAGVDPALVQ-----EVFFGNVLSANL-----------------------G--Q-APARQAALGAG 73 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCcCCc-----------------------C--C-cHHHHHHHhcC
Confidence 478999999999999999999888 899987431110 0 0 12345777788
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
+. -|.++|+++|+|++.++.+|+++|++|.+|++||+|+|.+.
T Consensus 74 l~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vlv~G~E~~s 118 (394)
T PLN02644 74 LPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMESMS 118 (394)
T ss_pred CCCCCceEEEeccchHHHHHHHHHHHHHHcCCCCEEEEEeEEecC
Confidence 85 38889999999999999999999999999999999988753
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=136.98 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+++|+++++|+ .|++|+...... ...++..++...|
T Consensus 29 ~~eL~~~a~~~al~~agl~~~~ID-----~vi~G~~~~~~~--------------------------~~~~ar~~a~~aG 77 (428)
T PRK08963 29 AVDLGKMVVGELLARSEIDPELIE-----QLVFGQVVQMPE--------------------------APNIAREIVLGTG 77 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeccCCCCC--------------------------ccHHHHHHHHHCC
Confidence 477999999999999999998888 899997532110 0224556888899
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 252 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~ 252 (349)
+. -|.++|+++|+||+.|+..|+++|++|.+|++||+|+|++..
T Consensus 78 l~~~~P~~tV~~aCaSG~~Ai~~Aa~~I~sG~~dvvLvgG~Esms~ 123 (428)
T PRK08963 78 MNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSV 123 (428)
T ss_pred CCCCCcceeehhhhHHHHHHHHHHHHHHHCCCCCEEEEecccccCC
Confidence 96 499999999999999999999999999999999999998643
|
|
| >KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-15 Score=130.83 Aligned_cols=185 Identities=28% Similarity=0.338 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
+..+|+-.|+..||+++.+.+.+.. -||+|+.... .+...++.+.+.--
T Consensus 29 ~A~~Lgsvaikaalera~v~~~~v~-----eVi~GnVl~A--------------------------nlGQapaRQaalgA 77 (396)
T KOG1390|consen 29 TATELGSVAIKAALERAVVPPSDVA-----EVIFGNVLSA--------------------------NLGQAPARQAALGA 77 (396)
T ss_pred chhhHHHHHHHHHHHhcCCCHHHhh-----hhhhcccccc--------------------------ccCcchHHHHHhhc
Confidence 3678999999999999988877654 5777763221 12235667777776
Q ss_pred CC--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHH--------------------------
Q 018905 208 GF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGF-------------------------- 259 (349)
Q Consensus 208 gl--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~-------------------------- 259 (349)
|| .-|++||+--|+|++.|+.+|++.|+.|..|++++||.|+|.....+...
T Consensus 78 Glp~sv~~tTvNkvCaSgmKAv~laaQsI~~G~~divVaGGmEsMS~vP~~~~~R~g~~~G~~~l~Dgi~~DGL~D~y~~ 157 (396)
T KOG1390|consen 78 GLPYSVPATTVNKVCASGMKAVILAAQSIQTGHADIVVAGGMESMSNVPYLYVARGGVKYGGVQLVDGIVKDGLTDAYDK 157 (396)
T ss_pred CCCcceeeEeehhhhhhhHHHHHHHHHHHhcCCccEEEecccchhccCcchhhhccCcCcCCeeeeechhhcchHHHhcc
Confidence 66 44999999999999999999999999999999999999996543311100
Q ss_pred Hhcccccc----ccC--------------------------C-----------------CCC------------CCCCCC
Q 018905 260 CKSRALTT----KYN--------------------------G-----------------TPQ------------EASRPF 280 (349)
Q Consensus 260 ~~~~~l~~----~~~--------------------------~-----------------~~~------------~~~~pf 280 (349)
..||...+ ++. + ..+ ...+|.
T Consensus 158 ~~MG~~aE~~a~~~~ItRe~QD~yAI~Sy~r~~~Aq~~g~f~~EIVPV~V~~~rg~~~v~~DEe~~k~~~~~~~~~l~~v 237 (396)
T KOG1390|consen 158 CHMGICAENTAKKYQITREEQDAYAIESYKRSENAQKAGKFDKEIVPVEVKTKRGETVVKKDEEPKKGSNIEKLSKLRPV 237 (396)
T ss_pred CCcchhHhhhHHHhCCcHhhhhhHHHHhHHHHHHHHhcCCCCCceeeEEEecCCCcEEeccchhhhcccchhhhccccce
Confidence 00111000 000 0 000 112222
Q ss_pred CCCCCcce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 281 DCGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 281 ~~~~~G~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
-...+|++ +.|||+|+||.+.+.+.+.|.+|+|+|.||+.+.. .|.....++..++.++|++|
T Consensus 238 F~~~ggTVTaaNAS~lnDGAAAvvL~s~e~~~~~glkPLArIv~~~dAa~-----~P~df~iaP~laipk~lk~a 307 (396)
T KOG1390|consen 238 FKEDGGTVTAANASTLNDGAAAVVLMSGEAAKELGLKPLARIVAWGDAAT-----EPIDFTIAPALAIPKALKKA 307 (396)
T ss_pred eecCCCeeccccccccCccceeeEEechhhHhHcCCchHHHHhhhhhhcc-----ChhhcccchHHHHHHHHHHc
Confidence 22233433 79999999999999999999999999999988654 45444556788999999875
|
|
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-14 Score=132.65 Aligned_cols=139 Identities=18% Similarity=0.188 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+++|+++++|+ .+++++..+++ . .+ ..+..|...+|
T Consensus 63 ~~~La~~A~~~aL~~agi~~~dId-----~li~~s~~~~~---------------------~----~p-~~a~~v~~~Lg 111 (378)
T PRK06816 63 NAQMAAEAIRDLLDDAGFSLGDIE-----LLACGTSQPDQ---------------------L----MP-GHASMVHGELG 111 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEECCCCc---------------------C----Ch-HHHHHHHhhCC
Confidence 578999999999999999998887 78888754321 0 11 22356788889
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHh-ccccccccCCCCCCCCCCCCCCCCc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCK-SRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
+.. |.+.|+.+|+|++.||..|..+|++|..+.+||+++|.+........+.. .+.+.+ .+...++||+.+..|
T Consensus 112 l~~~~~~~v~~~Cas~~~al~~A~~~i~sg~~~~vLvv~~E~~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 187 (378)
T PRK06816 112 APPIEVVSSAGVCAAGMMALKYAYLSVKAGESRNAVATASELASRWFRASRFEAEEEKLAE----LEENPEIAFEKDFLR 187 (378)
T ss_pred CCCCceeeecCcCHHHHHHHHHHHHHHHCCCCCEEEEEeEccchhhhhhhhhhhHHHHhhc----CcccCCCCCCCCCCC
Confidence 866 88999999999999999999999999999999999998554443322221 222321 123467899999999
Q ss_pred ceecceeeeEEeCChH
Q 018905 287 FVIGEGSGVLVLEELE 302 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~ 302 (349)
+++||||+|+||++.+
T Consensus 188 ~~fGDGA~A~vl~~~~ 203 (378)
T PRK06816 188 WMLSDGAGAVLLENKP 203 (378)
T ss_pred EeeecccEEEEEEecC
Confidence 9999999999998754
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=132.65 Aligned_cols=93 Identities=22% Similarity=0.106 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcCC
Q 018905 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (349)
Q Consensus 130 ~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (349)
..|+.+|+.+||+|+|+++++|+ +++++....... + .+.....++..+|+
T Consensus 38 ~eL~~eA~~~Al~dagl~~~dID-----~vv~~~~~~~~~-----------------------g--~~~~~~~~~~~lGl 87 (430)
T PRK06365 38 RERVKKAFDYAMNDAGLTLADID-----GSVASYFSDHFQ-----------------------R--QLLAGIMVQDYLGL 87 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC-----EEEEeccccccc-----------------------c--cchhhHHHHHhcCC
Confidence 67999999999999999999887 777765221110 0 01122335788999
Q ss_pred CC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC
Q 018905 210 QG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 252 (349)
Q Consensus 210 ~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~ 252 (349)
.. |+++|+++|+|+..||..|++.|++|.+|+|||+|+|.+.+
T Consensus 88 ~~~~~~~v~~~~aSg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~ 131 (430)
T PRK06365 88 VPKPSKRIEGGGATGGLAFQAGYEEIASGRMDCVAVYGFETMSH 131 (430)
T ss_pred CCCceEEEeCCcHHHHHHHHHHHHHHHcCCCCEEEEEEeeeccc
Confidence 76 89999999999999999999999999999999999997543
|
|
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-14 Score=133.77 Aligned_cols=183 Identities=19% Similarity=0.193 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+|||+++++|+ ++++++.... .....++..+|
T Consensus 28 ~~eL~~eA~~~Al~dAgl~~~dID-----~iv~~~~~~~------------------------------~~~~~la~~lG 72 (384)
T PRK06158 28 AMELLAQAAHRALADAGLTMADVD-----GLFTASPDDA------------------------------LWGLSVAEYLG 72 (384)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEecCCCC------------------------------CcHHHHHHHcC
Confidence 467999999999999999999888 8888863210 01124777889
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEe-ecCCCCCh------HHHHHHHh-ccc-------------cc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG-GTESSIDA------LSMAGFCK-SRA-------------LT 266 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvg-g~d~~~~~------~~~~~~~~-~~~-------------l~ 266 (349)
+++ |...+.++|+|+..+|..|+.+|++|.+|+|||+ |.+.+... .....+.. .+. +.
T Consensus 73 l~~~~~~~~~~g~~s~~~al~~A~~~I~sG~~d~vLV~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~al~a~~ym 152 (384)
T PRK06158 73 IRPRFVDGTMIGGSSFLAHLLPAALALEAGLCDVALICYGSNQRSAGGKLRSMLDPQPYEAPYKPVNPVSAYALAAARHM 152 (384)
T ss_pred CCCeeeccccCccHHHHHHHHHHHHHHHcCCCCEEEEeeccccccCcccccccccccchhcccCCCCcHHHHHHHHHHHH
Confidence 976 7788999999999999999999999999999986 66542110 00000000 000 00
Q ss_pred cccC------------------CCCCC----------------CCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEe
Q 018905 267 TKYN------------------GTPQE----------------ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIY 312 (349)
Q Consensus 267 ~~~~------------------~~~~~----------------~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~ 312 (349)
++|. .+|.. .+.|+.. .+...++|||+++||++++.|++.+.++
T Consensus 153 ~~yG~t~e~~a~vav~~~~~a~~NP~A~~~~~~t~e~vl~s~~ia~Pl~~-~d~~~~~DGAaAvVL~s~e~A~~l~~~~- 230 (384)
T PRK06158 153 HQYGTTREQLAEVAVAARQWAQLNPEAFMRDPLTIDDVLAARMVSDPLSV-RDCCLVTDGAGAVVMVRADRARDLPRPP- 230 (384)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCchhhhCCCCCHHHHhcCCccCCCCch-hhcCCccCCeEEEEEecHHHHhhcCCCc-
Confidence 0000 11211 1223322 3455689999999999999999887665
Q ss_pred EEEEeEEeeCCCCCCC-CCCCCcHHHHHHHHHHHHHh
Q 018905 313 AEVRGYGMSGDAHHIT-QPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 313 a~i~g~~~~~d~~~~~-~p~~~g~~~~~a~~~Al~~A 348 (349)
++|.|++.+++...+. .++........++++||++|
T Consensus 231 v~i~g~~~~~~~~~~~~~~~~~~~~~~~aa~~A~~~A 267 (384)
T PRK06158 231 VYVLGAAAATWHRQISSMPDLTVTAAAESGPRAFAMA 267 (384)
T ss_pred EEEEEEEEecCCcccccccchhhhHHHHHHHHHHHHc
Confidence 6799999887765443 23434455678999999876
|
|
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=131.72 Aligned_cols=189 Identities=18% Similarity=0.179 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC--CCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHH--
Q 018905 129 FIAYALCAADEALHDAKWLPSD--QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS-- 204 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~--~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia-- 204 (349)
...|+.+++++||+|+|+++++ |+ ++++|+..+.... . . ..++..++
T Consensus 48 ~~eL~~~a~~~al~~agl~~~d~~ID-----~vi~G~~~~~~~~----------------------~-~-~~~a~~~~~~ 98 (438)
T PTZ00455 48 LEELLATAIQGTLENTGLDGKAALVD-----KVVVGNFLGELFS----------------------S-Q-GHLGPAAVGS 98 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCcC-----EEEEEeccccccc----------------------c-c-cchHHHHHHh
Confidence 4779999999999999999988 88 8999875422100 0 0 01122222
Q ss_pred -----HHcCCCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH-H-----------H----------
Q 018905 205 -----MKYGFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL-S-----------M---------- 256 (349)
Q Consensus 205 -----~~lgl~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~-~-----------~---------- 256 (349)
..+|+.+ |.++|+++|+||+.|+..|+++|++|.+|++||+|+|++.... . +
T Consensus 99 ~gl~~~~~gl~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~dvvlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (438)
T PTZ00455 99 LGQSGASNALLYKPAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTVSARVGGDYLARAADYRRQRKLDDFT 178 (438)
T ss_pred ccCcccccccCCCceeEEECcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcchhhhhhccchhhccccccccCcc
Confidence 4556655 9999999999999999999999999999999999999753311 0 0
Q ss_pred -HH-HHh-ccccccccC------------------CCCCCC--CCCCCC------------------------CCCccee
Q 018905 257 -AG-FCK-SRALTTKYN------------------GTPQEA--SRPFDC------------------------GRDGFVI 289 (349)
Q Consensus 257 -~~-~~~-~~~l~~~~~------------------~~~~~~--~~pf~~------------------------~~~G~~~ 289 (349)
.. |.. +..+.+.+. .+|... .+|... -.+...+
T Consensus 179 ~~~~~a~~~~ym~~~ggitrE~la~vAvka~~~a~~nP~A~~~~~~~t~~~~~d~~~~~~e~l~s~~i~~pl~~~d~s~~ 258 (438)
T PTZ00455 179 FPCLFAKRMKYIQEHGHFTMEDTARVAAKAYANGNKNPLAHMHTRKLSLEFCTGASDKNPKFLGNETYKPFLRMTDCSQV 258 (438)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcCCHhhccCCCCCceeeccccccchhhhcCCcccCcCchhcCCCc
Confidence 00 100 000110000 112211 011111 1223347
Q ss_pred cceeeeEEeCChHHHHhcCCeE----eEEEEeEEeeCCCCCCCCC---CCCcHHHHHHHHHHHHHh
Q 018905 290 GEGSGVLVLEELEHAKKRGAKI----YAEVRGYGMSGDAHHITQP---HIDGKGAILAMTRALKQA 348 (349)
Q Consensus 290 gEGAaalvL~~~~~A~~~g~~~----~a~i~g~~~~~d~~~~~~p---~~~g~~~~~a~~~Al~~A 348 (349)
+|||+++||.+++.|++.+.+| .++|+|++..++.... .| ...+.+ ..++++||++|
T Consensus 259 sDGAaA~vl~See~A~~l~~~p~~~~~v~i~g~~~~~~~~~~-~~~~~~~~~~~-~~A~~~a~~~A 322 (438)
T PTZ00455 259 SDGGAGLVLASEEGLQKMGLSPNDSRLVEIKSLACASGNLYE-DPPDATRMFTS-RAAAQKALSMA 322 (438)
T ss_pred cccceEEEEecHHHHHhcCCCCCCCccEEEEEEEEecCCccc-CccccccchHH-HHHHHHHHHHc
Confidence 9999999999999999998776 6899999998764322 22 222333 68999999876
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=127.92 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+++|+.+++++ .+++++..+.. .....+.+|+..+|
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~~dId-----~li~~~~~~~~--------------------------~~p~~a~~v~~~lg 100 (329)
T PRK07204 52 SSYMGAEAAKKAVEDAKLTLDDID-----CIICASGTIQQ--------------------------AIPCTASLIQEQLG 100 (329)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCCC--------------------------CCccHHHHHHHHhC
Confidence 577999999999999999998887 78888754321 01144667899999
Q ss_pred CCC---CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCC
Q 018905 209 FQG---PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (349)
Q Consensus 209 l~G---p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~ 285 (349)
+++ |++.|+.+|+|++.||..|..+|++|.++.+||+++|...... .++...+
T Consensus 101 l~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~~~~Lvv~~e~~s~~~------------------------~~~~~~~ 156 (329)
T PRK07204 101 LQHSGIPCFDINSTCLSFITALDTISYAIECGRYKRVLIISSEISSVGL------------------------NWGQNES 156 (329)
T ss_pred CCCCCceEEEccchhHHHHHHHHHHHHHHHCCCCCEEEEEEeccccCCC------------------------CcccCcc
Confidence 974 8999999999999999999999999999999999999722110 0122335
Q ss_pred cceecceeeeEEeCChH
Q 018905 286 GFVIGEGSGVLVLEELE 302 (349)
Q Consensus 286 G~~~gEGAaalvL~~~~ 302 (349)
++++||||+|+||++.+
T Consensus 157 ~~lfGDGAaA~ll~~~~ 173 (329)
T PRK07204 157 CILFGDGAAAVVITKGD 173 (329)
T ss_pred eEEEecccEEEEEEEcC
Confidence 78899999999999754
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=132.25 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+|+|+++++|+ .+++|+..+... ...++..++...|
T Consensus 31 ~~~L~~~a~~~al~~agl~~~~Id-----~vi~G~~~~~~~--------------------------~~~~ar~~~l~aG 79 (430)
T TIGR02446 31 AVDLGKMVVSELLARSEIDPKLIE-----QLVFGQVVQMPE--------------------------APNIAREIVLGTG 79 (430)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCcCc--------------------------cchHHHHHHHhCC
Confidence 477999999999999999998887 899997542110 1235566666678
Q ss_pred CC-C-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 209 FQ-G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 209 l~-G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
+. + |.++|+++|+||+.|+.+|+++|++|.+|++||+|+|++.
T Consensus 80 l~~~~p~~~V~~~CaSG~~A~~~a~~~I~sG~~dvvla~G~E~mS 124 (430)
T TIGR02446 80 MNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSS 124 (430)
T ss_pred CCCCCchhhhhhhhhHHHHHHHHHHHHHHCCCCCEEEEeeeEccc
Confidence 86 4 9999999999999999999999999999999999999964
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=130.60 Aligned_cols=185 Identities=18% Similarity=0.188 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+++|+++++|+ .+++|+...... ....++..+...-|
T Consensus 26 ~~~L~~~a~~~al~~a~l~~~~Id-----~vi~G~~~~~~~-------------------------~~~~~ar~~~l~~g 75 (390)
T PRK06504 26 PADLAAQVLDALVDRSGADPALIE-----DVIMGCVSQVGE-------------------------QATNVARNAVLASK 75 (390)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccccc-------------------------ccccHHHHHHHHcC
Confidence 378999999999999999999888 899997541100 00012222222234
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH-HHH---------------HHh--------c
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-MAG---------------FCK--------S 262 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~-~~~---------------~~~--------~ 262 (349)
| .-|.++|+++|+||+.|+..|++.|++|.+|++||+|+|++..... ... +.. +
T Consensus 76 l~~~vP~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvLagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (390)
T PRK06504 76 LPESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMTRVPMGSPSTLPAKNGLGHYKSPGMEERYPGIQFSQ 155 (390)
T ss_pred CCCCCceEEEechhhHHHHHHHHHHHHHHCCCCCEEEEeeeeecCCCccccccccccccccccccccccccccCCCCCCH
Confidence 4 4599999999999999999999999999999999999998643210 000 000 0
Q ss_pred ----cccccccC------------------CCCC-----------------C---------------------CCCCCCC
Q 018905 263 ----RALTTKYN------------------GTPQ-----------------E---------------------ASRPFDC 282 (349)
Q Consensus 263 ----~~l~~~~~------------------~~~~-----------------~---------------------~~~pf~~ 282 (349)
..+.++|+ ..++ + ..+|...
T Consensus 156 ~~aae~~a~~ygisre~~d~~A~ksh~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~~De~~r~~~t~e~l~~~~~~~~ 235 (390)
T PRK06504 156 FTGAEMMAKKYGLSKDQLDEFALQSHQRAIAATQAGKFKAEIVPLEITRADGSGEMHTVDEGIRFDATLEGIAGVKLIAE 235 (390)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhHHcCCCccccccccccCCCCCceEEccCCCCCCCCCHHHHhcCCCCCC
Confidence 00001111 0000 0 1122211
Q ss_pred C-----CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 283 G-----RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 283 ~-----~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
. .+...++|||+++||.+++.|++.+.++.++|.+++.... .|.....+...++++||++|
T Consensus 236 ~g~lt~~n~s~~~DGAaA~vl~s~~~A~~l~~~p~~~i~~~~~~~~-----~~~~~~~~~~~a~~~a~~~a 301 (390)
T PRK06504 236 GGRLTAATASQICDGASGVMVVNERGLKALGVKPLARIHHMTVIGG-----DPVIMLEAPLPATERALKKA 301 (390)
T ss_pred CCCCcCccCCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEEeec-----CchhhhccHHHHHHHHHHHc
Confidence 0 2333479999999999999999998888778888877654 22223446678999999876
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.7e-14 Score=133.47 Aligned_cols=190 Identities=20% Similarity=0.231 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+|+|+++++++ .+++++..... ......+..++..+|
T Consensus 23 ~~~La~~A~~~Al~dAgl~~~dId-----~vi~~~~~~~~-------------------------~~~~~~a~~va~~lG 72 (399)
T PRK06059 23 FVEYGVVAARAALADAGLDWRDVQ-----LVVGADTIRNG-------------------------YPGFVAGATFAQALG 72 (399)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCc-------------------------cCCccHHHHHHHHhC
Confidence 377999999999999999988887 77777533210 001123456888999
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH-HH--H------HHHh---ccc--------cc-
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL-SM--A------GFCK---SRA--------LT- 266 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~-~~--~------~~~~---~~~--------l~- 266 (349)
+.+ |.++|+++|+|++.+|..|+++|++|++|.+||+|+|.+.... .. . .+.. .+. +.
T Consensus 73 ~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~ 152 (399)
T PRK06059 73 WNGAPVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTTPKGFFAPVGGERPDDPDWLRFHLIGATNPVYFALLAR 152 (399)
T ss_pred CCCCceecccchhHHHHHHHHHHHHHHHCCCCCEEEEEEEcccCCCCCcccccccccccchhhcccCCCccHHHHHHHHH
Confidence 988 8999999999999999999999999999999999999743210 00 0 0000 000 00
Q ss_pred ---cccC------------------CCCCCCC-CCCCC--------------CCCcceecceeeeEEeCChHHHHhc--C
Q 018905 267 ---TKYN------------------GTPQEAS-RPFDC--------------GRDGFVIGEGSGVLVLEELEHAKKR--G 308 (349)
Q Consensus 267 ---~~~~------------------~~~~~~~-~pf~~--------------~~~G~~~gEGAaalvL~~~~~A~~~--g 308 (349)
++|+ .+|+... +|++. .-+...++|||+++||.+++.|++. +
T Consensus 153 ~~~~~yg~s~e~~a~v~~~~~~~a~~Np~A~~r~~~t~e~v~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~~~A~~l~~~ 232 (399)
T PRK06059 153 RRMDLYGATVEDFAQVKVKNARHGLLNPNARYRKEVTVEDVLASPVVSDPLRLLDICATSDGAAALIVASKSFARRHLGS 232 (399)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccCcHhhcCCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEecHHHHHhhccc
Confidence 0011 1121111 11110 1234447999999999999999988 6
Q ss_pred CeEeEEEEeEEeeCCCCC--CCC------------CCCCcHHHHHHHHHHHHHh
Q 018905 309 AKIYAEVRGYGMSGDAHH--ITQ------------PHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 309 ~~~~a~i~g~~~~~d~~~--~~~------------p~~~g~~~~~a~~~Al~~A 348 (349)
.++.++|.|++...+..+ +.. |.++......++++||++|
T Consensus 233 ~~~~v~I~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~a 286 (399)
T PRK06059 233 VAGVPSVRAISTVTPRYPQHLPELPDIATDSTAAVPAPERVFKDQILDAAYAEA 286 (399)
T ss_pred cCCceEEEEEEEecccccccccccccccccccccccccccHHHHHHHHHHHHHc
Confidence 556689999988764332 110 1111122356788888875
|
|
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=128.60 Aligned_cols=185 Identities=21% Similarity=0.206 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+..+++++|+++|+++++++ .|++|+....- .....++.+++..-|
T Consensus 29 ~~~L~~~~~~~~l~r~~i~~~~id-----~vi~G~~~~~g-------------------------~~g~n~aR~~al~ag 78 (417)
T PRK06025 29 PQHLAATVLKALAERNGLNTADVD-----DIIWSTSSQRG-------------------------KQGGDLGRMAALDAG 78 (417)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHCC-----EEEEEcCCCcC-------------------------cccCcHHHHHHHhCC
Confidence 567888899999999999988887 89999864211 001235666676767
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHHHH-----H-----HHhc-ccccccc-----
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALSMA-----G-----FCKS-RALTTKY----- 269 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~~~-----~-----~~~~-~~l~~~~----- 269 (349)
| +-|.+||+..|+||+.|+.+|++.|++|+.|++|+||+|+++. |+.+. . .... ..+...+
T Consensus 79 lp~~vp~~tvnr~C~Sgl~ai~~aa~~I~~G~~~~~laGG~EsmS~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M 158 (417)
T PRK06025 79 YDIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMMSYTAAMAAEDMAAGKPPLGMGSGNLRLRALHPQSHQ 158 (417)
T ss_pred CCCCCCeeeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCcccccccccCCCCcccccccCcccccccCCCCH
Confidence 7 4599999999999999999999999999999999999999663 32110 0 0000 0000101
Q ss_pred -----------C---------------------------------CC--------CCCCCC------------C-CCC--
Q 018905 270 -----------N---------------------------------GT--------PQEASR------------P-FDC-- 282 (349)
Q Consensus 270 -----------~---------------------------------~~--------~~~~~~------------p-f~~-- 282 (349)
+ .. .++..| | |..
T Consensus 159 g~~ae~~a~~~~isRe~~D~~A~~Sh~rA~~A~~~G~f~~eIvPv~~~~~~~~~~~De~~R~~~t~e~la~L~p~F~~~~ 238 (417)
T PRK06025 159 GVCGDAIATMEGITREALDALGLESQRRAARAIKEGRFDKSLVPVYRDDGSVALDHEEFPRPQTTAEGLAALKPAFTAIA 238 (417)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEeeEEcCCCCEEecCCCCCCCCCCHHHHcCCCCCccccc
Confidence 0 00 111112 2 432
Q ss_pred ----CCCcc------------------e-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCC
Q 018905 283 ----GRDGF------------------V-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID 333 (349)
Q Consensus 283 ----~~~G~------------------~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~ 333 (349)
..+|. + ++|||+++||++++.|++++.+++++|.|++...+ .|...
T Consensus 239 ~~~~~~~g~~~~~~~~~~~~~~~~~~~vTagNss~~sDGAAAvVL~See~A~~lg~~p~a~I~g~~~a~~-----~p~~~ 313 (417)
T PRK06025 239 DYPLDDKGTTYRGLINQKYPDLEIKHVHHAGNSSGVVDGAAALLLASKAYAEKHGLKPRARIVAMANMGD-----DPTLM 313 (417)
T ss_pred cccccCCccccccccccccccccccccccccccCCCCcceEEEEEecHHHHHHcCCCCcEEEEEEEEecC-----Cchhh
Confidence 01354 2 69999999999999999999999999999999876 33333
Q ss_pred cHHHHHHHHHHHHHh
Q 018905 334 GKGAILAMTRALKQA 348 (349)
Q Consensus 334 g~~~~~a~~~Al~~A 348 (349)
+.++..+++++|++|
T Consensus 314 ~~~p~~Ai~~aL~~A 328 (417)
T PRK06025 314 LNAPVPAAKKVLAKA 328 (417)
T ss_pred cccHHHHHHHHHHHc
Confidence 445678999999876
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.9e-13 Score=126.94 Aligned_cols=188 Identities=20% Similarity=0.179 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+|+||++++|+ ++++|+....+. .+ .....++..+|
T Consensus 27 ~~~L~~ea~~~AL~dagl~~~dID-----~v~vg~~~~~~~----------------------~~----~~~~~~a~~lG 75 (398)
T PRK06157 27 AEDLMVEAFLEALADAGIEPKDID-----AAWFGTHYDEIG----------------------SG----KSGTPLSRALR 75 (398)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccccc----------------------cc----chhHHHHHHcC
Confidence 467999999999999999999998 899987432110 00 01123667899
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hH---HH-------H----------HH-------
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-AL---SM-------A----------GF------- 259 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~---~~-------~----------~~------- 259 (349)
+.+ |.++|+++|+|++.+|.+|+..|++|.+|++||+|+|++.. +. .. . .+
T Consensus 76 l~~~~~~~v~~~c~sg~~ai~~A~~~I~sG~~d~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~ 155 (398)
T PRK06157 76 LPNIPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVEKLKDTGYGGLPVANPGTLADMTMPNVTAPGNFAQLASAY 155 (398)
T ss_pred CCCCCEEEEecccHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCccccccccccccchhcccccCchHHHHHHHHHHH
Confidence 977 88899999999999999999999999999999999997432 10 00 0 00
Q ss_pred -Hhcccccccc----C-----------CCCCCCC------------C----CCCCCCCcceecceeeeEEeCChHHHHhc
Q 018905 260 -CKSRALTTKY----N-----------GTPQEAS------------R----PFDCGRDGFVIGEGSGVLVLEELEHAKKR 307 (349)
Q Consensus 260 -~~~~~l~~~~----~-----------~~~~~~~------------~----pf~~~~~G~~~gEGAaalvL~~~~~A~~~ 307 (349)
...+.-.+.. . .+|+... + |+.. -+...++|||+++||.+++.|++.
T Consensus 156 ~~~yG~t~e~~~~~~a~vav~~~~~A~~np~A~~r~~~t~e~v~~s~~v~~Pl~~-~d~~~~~DGAaA~vl~s~~~A~~l 234 (398)
T PRK06157 156 AAKYGVSREDLKRAMAHVSVKSHANGARNPKAHLRKAVTEEQVLKAPMIAGPLGL-FDCCGVSDGAAAAIVTTPEIARAL 234 (398)
T ss_pred HHHhCCCHHHHcccccHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCch-hccCCCCCccEEEEEecHHHHHhh
Confidence 0000000000 0 1121111 1 1111 244447999999999999999998
Q ss_pred CCeEeEEEEeEEeeCCCCCCC---CCCCC-cHHHHHHHHHHHHHh
Q 018905 308 GAKIYAEVRGYGMSGDAHHIT---QPHID-GKGAILAMTRALKQA 348 (349)
Q Consensus 308 g~~~~a~i~g~~~~~d~~~~~---~p~~~-g~~~~~a~~~Al~~A 348 (349)
+.++.++|+|++..++..... ..++. ......++++||++|
T Consensus 235 ~~~~~v~I~g~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~A 279 (398)
T PRK06157 235 GKKDPVYVKALQLAVSNGWELQYNGWDGSYFPTTRIAARKAYREA 279 (398)
T ss_pred CCCCCeEEEEEEEecccccccccccccccccHHHHHHHHHHHHHc
Confidence 875568999999876533211 11221 223567899999876
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=127.46 Aligned_cols=178 Identities=21% Similarity=0.292 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcCC
Q 018905 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (349)
Q Consensus 130 ~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (349)
..|+..++.++++ |++ .+++ .|++|+..+.. ..++..++...|+
T Consensus 26 ~~L~~~a~~~~~~--gi~-~~Id-----~vi~G~~~~~~----------------------------~~~~r~~~~~~Gl 69 (361)
T PRK06690 26 QQLAAPLLTFLSK--GME-REID-----DVILGNVVGPG----------------------------GNVARLSALEAGL 69 (361)
T ss_pred HHHHHHHHHHHHc--cch-hhcC-----EEEEEecCCCc----------------------------chHHHHHHHHcCC
Confidence 7788889888744 885 6787 89999854321 1223446777888
Q ss_pred C-C-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH--HHH-----H--hccccc----cccC----
Q 018905 210 Q-G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM--AGF-----C--KSRALT----TKYN---- 270 (349)
Q Consensus 210 ~-G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~--~~~-----~--~~~~l~----~~~~---- 270 (349)
. + |+++|+++|+||+.|+..|+++|++|++|++||+|+|.+...... ..+ . .++... ++|+
T Consensus 70 ~~~~p~~tV~~~CaSG~~Ai~~a~~~I~sG~~d~~l~gG~E~ms~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~ygitre 149 (361)
T PRK06690 70 GLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSPFQNRARFSPETIGDPDMGVAAEYVAERYNITRE 149 (361)
T ss_pred CCCCCceehhhhhhHHHHHHHHHHHHHHCCCCCEEEEeccccccCCCcccccccCcccccCccHHHHHHHHHHHhCCCHH
Confidence 6 4 999999999999999999999999999999999999986532100 000 0 001000 0011
Q ss_pred -----------------CCCC-------------CCC-------------CC-CCCC-----CCcceecceeeeEEeCCh
Q 018905 271 -----------------GTPQ-------------EAS-------------RP-FDCG-----RDGFVIGEGSGVLVLEEL 301 (349)
Q Consensus 271 -----------------~~~~-------------~~~-------------~p-f~~~-----~~G~~~gEGAaalvL~~~ 301 (349)
.++. ... +| |+.+ .+...++|||+++||+++
T Consensus 150 ~~d~~A~~s~k~a~~a~~n~~~~~ei~~v~~~~d~~~r~~~~~e~ll~~l~p~~~~~g~lt~~~~~~~~DGAaAvvl~s~ 229 (361)
T PRK06690 150 MQDEYACLSYKRTLQALEKGYIHEEILSFNGLLDESIKKEMNYERIIKRTKPAFLHNGTVTAGNSCGVNDGACAVLVMEE 229 (361)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCceecccCccccccCCCCCHHHHhhcCCCcccCCCceeccccCCCCCCeEEEEEecH
Confidence 0111 000 12 2211 122336999999999999
Q ss_pred HHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 302 EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 302 ~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+.|++++.++.++|.|++.... .|...+.+...+++++|++|
T Consensus 230 e~A~~lg~~p~~~i~~~~~~~~-----~~~~~~~~~~~a~~~al~~A 271 (361)
T PRK06690 230 GQARKLGYKPVLRFVRSAVVGV-----DPNLPGTGPIFAVNKLLNEM 271 (361)
T ss_pred HHHHHcCCCceEEEEEEEEecc-----CcccchhHHHHHHHHHHHHc
Confidence 9999999888889999887653 23333567789999999986
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=128.52 Aligned_cols=184 Identities=18% Similarity=0.152 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+||||++.+|+ +++.+.... . . ....++..+|
T Consensus 25 ~~~L~~eA~~~Al~DAgl~~~dID-----~~~~~~~~~---------------------~-----~----~~~~~~~~lG 69 (388)
T PRK08142 25 VAQLHAEVAKGALADAGLSLADVD-----GYFCAGDAP---------------------G-----L----GPASMVDYLG 69 (388)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEcCCCC---------------------C-----c----cHHHHHHhCC
Confidence 367999999999999999998887 665421100 0 0 0123778899
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH---H----HH------HHHh-cccc--------
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL---S----MA------GFCK-SRAL-------- 265 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~---~----~~------~~~~-~~~l-------- 265 (349)
+++ |...++++|+|+..++..|+..|++|.+|+|||+|+|.+.... . +. .+.. .+..
T Consensus 70 l~~~~~~~v~~gg~s~~~a~~~A~~~I~sG~~d~vLvvg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Al~ 149 (388)
T PRK08142 70 LKLRHVDSTETGGSSYLAHVGHAAQAIAAGKCSVALITLAGRPRSEGSSGTEPRNWGADAPDAPFEAPYGPTTHNLYAMC 149 (388)
T ss_pred CCCeeeccccCCcHHHHHHHHHHHHHHHcCCCCEEEEEeeeecccCCccccccccccccccccchhcccccccHHHHHHH
Confidence 976 7888999999999999999999999999999999998733110 0 00 0000 0000
Q ss_pred cc----ccC------------------CCCCC-CCCCCCCC--------------CCcceecceeeeEEeCChHHHHhcC
Q 018905 266 TT----KYN------------------GTPQE-ASRPFDCG--------------RDGFVIGEGSGVLVLEELEHAKKRG 308 (349)
Q Consensus 266 ~~----~~~------------------~~~~~-~~~pf~~~--------------~~G~~~gEGAaalvL~~~~~A~~~g 308 (349)
.+ +|. .+|.. ..+|++.+ -+...++|||+++||.+++.|++.+
T Consensus 150 a~~ym~~yG~t~e~la~vav~~~~~A~~NP~A~~r~~~t~e~vl~s~~Ia~Pl~l~d~~~~~DGAaA~vl~s~~~A~~l~ 229 (388)
T PRK08142 150 AMRHMHEYGTTSEQLAWIKVAASHHAQHNPHAMLRDVVTVEDVLNSPMIADPLHRLDCCVVTDGGGALVVVRPEIARSLK 229 (388)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHhccCChhhcCCCCCHHHHhcCCcccCCchhhccCcccCceEEEEEecHHHHhhcC
Confidence 00 000 12221 11122111 2334479999999999999999887
Q ss_pred CeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 309 AKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 309 ~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
. +.++|.|++..++..+...++........++++||++|
T Consensus 230 ~-~~v~I~g~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~A 268 (388)
T PRK08142 230 R-PLVKVLGAGEAIKGQMGGKVDLTYSGAAWSGPAAFAEA 268 (388)
T ss_pred C-CCEEEEEEEEecCCccccCcccccHHHHHHHHHHHHHc
Confidence 4 44899999998886554455545556678999999876
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-13 Score=128.31 Aligned_cols=192 Identities=18% Similarity=0.189 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+|||+++++|+ ++++|+..+.... .. ........ ....+
T Consensus 26 ~~eLa~eA~~~AL~dAgl~~~dID-----~vi~g~~~~~~~~----------------~~----~~~~~~~~---~~~~~ 77 (403)
T PRK06289 26 FADLTREVVDGTLAAAGVDADDIE-----VVHVGNFFGELFA----------------GQ----GHLGAMPA---TVHPA 77 (403)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccccccc----------------cc----cccchHHH---HHhhc
Confidence 478999999999999999999998 8999875332100 00 00001111 11234
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH---HHH------Hh------------ccccc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM---AGF------CK------------SRALT 266 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~---~~~------~~------------~~~l~ 266 (349)
+.| |.++|+++|+|++.||..|+.+|++|.+|.|||+|+|.+...... ..+ .. ++...
T Consensus 78 ~~g~~~~~v~~~Casg~~al~~Aa~~I~sG~~~~VLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a 157 (403)
T PRK06289 78 LWGVPASRHEAACASGSVATLAAMADLRAGRYDVALVVGVELMKTVPGDVAAEHLGAAAWTGHEGQDARFPWPSMFARVA 157 (403)
T ss_pred CCCCceeecccccHHHHHHHHHHHHHHHcCCCCEEEEEEEEecCCCCchhhHHhhhcccccccccccCCCccHHHHHHHH
Confidence 434 899999999999999999999999999999999999974432100 000 00 00000
Q ss_pred c----ccC------------------CCCCCCCC------CCCC--------------CCCcceecceeeeEEeCChHHH
Q 018905 267 T----KYN------------------GTPQEASR------PFDC--------------GRDGFVIGEGSGVLVLEELEHA 304 (349)
Q Consensus 267 ~----~~~------------------~~~~~~~~------pf~~--------------~~~G~~~gEGAaalvL~~~~~A 304 (349)
+ +|. .+|....+ |... .-+...++|||+++||.+++.|
T Consensus 158 ~~y~~~yG~t~e~la~va~~~~~~A~~NP~A~~~~~~~~~~~~~~d~~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~e~a 237 (403)
T PRK06289 158 DEYDRRYGLDEEHLRAIAEINFANARRNPNAQTRGWAFPDEATNDDDATNPVVEGRLRRQDCSQVTDGGAGVVLASDAYL 237 (403)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCcHhhcCccccccccchhhhhcCCcccCCCchhhcCCCCCceeEEEEEcHHHH
Confidence 0 011 12211111 1110 0123337899999999999999
Q ss_pred HhcCC-eEeEEEEeEEeeCCCCCCCC------CCCC-cHHHHHHHHHHHHHh
Q 018905 305 KKRGA-KIYAEVRGYGMSGDAHHITQ------PHID-GKGAILAMTRALKQA 348 (349)
Q Consensus 305 ~~~g~-~~~a~i~g~~~~~d~~~~~~------p~~~-g~~~~~a~~~Al~~A 348 (349)
++.+. ++.++|+|++..++...+.. .++. -.....++++||++|
T Consensus 238 ~~l~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~A 289 (403)
T PRK06289 238 RDYADARPIPRIKGWGHRTAPLGLEQKLDRSAGDPYVLPHVRQAVLDAYRRA 289 (403)
T ss_pred HHhccCCCCEEEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHc
Confidence 98875 66789999999876543221 1121 234567999999886
|
|
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=126.92 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+..|+.+||+++|+.+++++ .++++++.... . .+ ..+.+|+..+|
T Consensus 52 ~~~la~~A~~~al~~agl~~~~id-----~vi~~~~~~~~---------------------~----~~-~~~~~i~~~lG 100 (319)
T PRK09352 52 TSDLATEAAKKALEAAGIDPEDID-----LIIVATTTPDY---------------------A----FP-STACLVQARLG 100 (319)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC---------------------C----Cc-hHHHHHHHHhC
Confidence 688999999999999999988887 78888754221 0 11 23567899999
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
+.+ |.++|.++|+|++.||..|.++|++|.+|.+||+|+|.+.... . ++....++
T Consensus 101 ~~~~~~~~v~~~Casg~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~-----------~-------------~~~~~~~~ 156 (319)
T PRK09352 101 AKNAAAFDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKLSRIV-----------D-------------WTDRSTCV 156 (319)
T ss_pred CCCCcEeeccccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhcccc-----------C-------------cccCCceE
Confidence 988 8999999999999999999999999999999999999732111 0 11122467
Q ss_pred eecceeeeEEeCChHH
Q 018905 288 VIGEGSGVLVLEELEH 303 (349)
Q Consensus 288 ~~gEGAaalvL~~~~~ 303 (349)
++||||+|+||++.+.
T Consensus 157 ~~gDGaaA~ll~~~~~ 172 (319)
T PRK09352 157 LFGDGAGAVVLGASEE 172 (319)
T ss_pred EEeccceEEEEEEcCC
Confidence 8999999999998543
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-13 Score=127.33 Aligned_cols=185 Identities=16% Similarity=0.208 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.+||+|+|+++++|+ +|++|+...... . ...++..+....|
T Consensus 26 ~~~L~~~a~~~al~dagl~~~~ID-----~vv~g~~~~~~~-~------------------------~~~~~~~~~l~~g 75 (382)
T PRK07801 26 PADLGAHVLKGLVDRTGIDPAAVD-----DVIFGCVDTIGP-Q------------------------AGNIARTSWLAAG 75 (382)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcC-----EEEEEeeccCCc-c------------------------cccHHHHHHHHcC
Confidence 467999999999999999999888 899886311000 0 0001222222344
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hH--H--HH-------------HH-Hhccc---
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-AL--S--MA-------------GF-CKSRA--- 264 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~--~--~~-------------~~-~~~~~--- 264 (349)
+ ..|.++|+++|+|++.|+..|+++|++|.+|++||+|+|.+.. +. . .. .+ ...+.
T Consensus 76 l~~~~p~~~v~~acaSg~~Av~~Aa~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 155 (382)
T PRK07801 76 LPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQIPISSAMTAGEQLGFTSPFAESKGWLHRYGDQEV 155 (382)
T ss_pred CCCCCceeeecchhhhHHHHHHHHHHHHHCCCCCEEEEcchhhhcCCcccccccccccccCCcccccCcchhhhccCCCC
Confidence 4 4699999999999999999999999999999999999996422 21 0 00 00 00010
Q ss_pred --------cccccC------------------CCCCC----------------------------CCCCCC-----CCCC
Q 018905 265 --------LTTKYN------------------GTPQE----------------------------ASRPFD-----CGRD 285 (349)
Q Consensus 265 --------l~~~~~------------------~~~~~----------------------------~~~pf~-----~~~~ 285 (349)
+.++|+ .+|+. ..+|.. ...+
T Consensus 156 ~~~~~a~~~~~~yG~tre~~a~vav~~~~~a~~n~~ag~~~~~~~p~~~~~~d~~~~~~t~e~~~~~~~i~~~~pl~~~d 235 (382)
T PRK07801 156 SQFRGAELIAEKWGISREEMERFALESHRRAFAAIRAGRFDNEIVPVGGVTVDEGPRETSLEKMAGLKPLVEGGRLTAAV 235 (382)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccCccccCCcCcCCHHHHhcCCCCCCCCCccccc
Confidence 000111 01110 111211 1123
Q ss_pred cceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 286 G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
...++|||+++||++++.|++++.+++++|.|++...+.. .....+...++++||++|
T Consensus 236 ~~~~~DGaaa~il~s~e~a~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~a~~~a~~~a 293 (382)
T PRK07801 236 ASQISDGASAVLLASERAVKRHGLTPRARIHHLSVRGDDP-----VFMLTAPIPATRYALEKT 293 (382)
T ss_pred CCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEecCCh-----HhhccChHHHHHHHHHHc
Confidence 3447999999999999999999988889999987765421 111223367899999876
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=126.20 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH--
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK-- 206 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~-- 206 (349)
...|+.+++.+||+++|+++++++ .+++|+..+... ...++..++..
T Consensus 31 ~~eL~~~a~~~al~~agl~~~~Id-----~vv~G~~~~~~~--------------------------~~~~~r~~~l~~g 79 (427)
T PRK09268 31 NQDMLTAALDGLVDRFGLQGERLG-----EVVAGAVLKHSR--------------------------DFNLTRECVLGSA 79 (427)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccCCc--------------------------cccHHHHHHHHcC
Confidence 467999999999999999998888 899997542110 00123333344
Q ss_pred cCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 207 YGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 207 lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
++...|.++|+++|+||+.|+..|+++|++|.+|++||+|+|.+.
T Consensus 80 l~~~~p~~~V~~~CaSG~~ai~~A~~~I~sG~~d~vlvgG~E~ms 124 (427)
T PRK09268 80 LSPYTPAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTTS 124 (427)
T ss_pred CCCCCceeeeechhhHHHHHHHHHHHHHHCCCCCEEEEeeEEccC
Confidence 454679999999999999999999999999999999999999854
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=125.90 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHH-HHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASG-HVSM 205 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~ia~ 205 (349)
.....|+..|+.+||+++|+++++|+ .|++|+..+... + . .++. .+..
T Consensus 21 ~~~~el~~~a~~~Al~~agl~p~dID-----~vi~g~~~~~~~-----------------------g--~-~~~~~~~~~ 69 (393)
T cd00826 21 DLAHEAGAKAIAAALEPAGVAAGAVE-----EACLGQVLGAGE-----------------------G--Q-NCAQQAAMH 69 (393)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEccCCcc-----------------------c--C-cHHHHHHHH
Confidence 34678999999999999999999888 899998654321 0 0 1111 1455
Q ss_pred HcCCCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 206 KYGFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 206 ~lgl~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
.+++.+ |+++|+++|+|++.|+..|+++|++|.+|++||+|+|.+.
T Consensus 70 ~lg~~~~p~~~V~~~Casg~~al~~A~~~I~sG~~~~vlv~g~e~~s 116 (393)
T cd00826 70 AGGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKME 116 (393)
T ss_pred cCCCCCCcEEEecchhHHHHHHHHHHHHHHHCCCCCEEEEEeeeccc
Confidence 677766 9999999999999999999999999999999999999853
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=120.63 Aligned_cols=134 Identities=22% Similarity=0.224 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+++|+.+++|+ .+++++...+.. ....+.+++..+|
T Consensus 61 ~~~la~~Aa~~aL~~ag~~~~~Id-----~li~~s~~~~~~--------------------------~p~~a~~v~~~lg 109 (338)
T PRK09258 61 LSDGAIAAGRKALAEAGIDPSDIG-----LLINTSVCRDYL--------------------------EPATACRVHHNLG 109 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCCC--------------------------CChHHHHHHHHcC
Confidence 568999999999999999998887 788887532210 1135577899999
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
+.. +.+.|.++|+|++.||..|..+|++|.++.+||+++|... ...-..+..+. . +.....+|+.....
T Consensus 110 l~~~~~~~~v~~~C~~~~~al~~A~~~i~~g~~~~~Lvv~~e~~s-~~~~~~~~~~~--~------~~~~~~~~~~~~~~ 180 (338)
T PRK09258 110 LPKSCANFDVSNACLGFLNGMLDAANMIELGQIDYALVVSGESAR-EIVEATIDRLL--A------PETTREDFAQSFAT 180 (338)
T ss_pred CCCCCceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEecccc-hhccchhhhhc--c------Cccchhhhhhccce
Confidence 963 7899999999999999999999999999999999999733 22111111111 1 11122456666667
Q ss_pred ceecceeeeEEeCChH
Q 018905 287 FVIGEGSGVLVLEELE 302 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~ 302 (349)
+.+||||+|+||++.+
T Consensus 181 ~~~GDGA~A~ll~~~~ 196 (338)
T PRK09258 181 LTLGSGAAAAVLTRGS 196 (338)
T ss_pred EEecccceEEEEecCC
Confidence 8899999999999754
|
|
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.5e-12 Score=118.70 Aligned_cols=185 Identities=19% Similarity=0.200 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHCC-CCC-CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 129 FIAYALCAADEALHDAK-WLP-SDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAg-i~~-~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
...|+.+|+.+||+||| |++ ++|+ ++++++. ..+.. . ......+...
T Consensus 25 ~~eL~~eA~~~Al~DAG~l~~~~dId-----~~~~~~~-~~~~~------------------~-------~~~~~~~~~~ 73 (385)
T PRK06066 25 FREMMFEAASRAYKDAGNINPRRDVD-----SFISCQE-DFWEG------------------I-------AIADEFAPDQ 73 (385)
T ss_pred HHHHHHHHHHHHHHhcCCCCChhcCC-----EEEEecC-cccCc------------------c-------cccchhHHHH
Confidence 46799999999999999 986 6887 8887642 11100 0 0111225566
Q ss_pred cCCC-CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHH---------HH-hcc---------ccc
Q 018905 207 YGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAG---------FC-KSR---------ALT 266 (349)
Q Consensus 207 lgl~-Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~---------~~-~~~---------~l~ 266 (349)
+|+. .|.+.| |+|+..++..|+..|++|.+|+|||+|++++........ +. ..+ ...
T Consensus 74 lg~~~~~~~~v---~~sg~~a~~~A~~aV~sG~~d~vLv~g~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~p~~~~al~a 150 (385)
T PRK06066 74 IGGAMRPTMTV---AGDGLQGLAHAVMHINSGLANVVVVEAHSKPSDILTFSDVVKFAMDPIYVRPIGPPNPHFIAGLDA 150 (385)
T ss_pred cccCCCCeEEE---eCcHHHHHHHHHHHHHcCCCCEEEEEEEeeccCccchhhhhhcccCcceecccCCCcHHHHHHHHH
Confidence 7874 477776 889999999999999999999999999986432000000 00 000 000
Q ss_pred c----ccC------------------CCCCCC-CCCCCC--------------CCCcceecceeeeEEeCChHHHHhcCC
Q 018905 267 T----KYN------------------GTPQEA-SRPFDC--------------GRDGFVIGEGSGVLVLEELEHAKKRGA 309 (349)
Q Consensus 267 ~----~~~------------------~~~~~~-~~pf~~--------------~~~G~~~gEGAaalvL~~~~~A~~~g~ 309 (349)
+ +|. .+|... .+|++. ..+...++|||+++||.+++.|++.+.
T Consensus 151 ~rym~~yG~t~E~lA~Vavk~r~nA~~NP~A~~r~~~t~edvl~S~~ia~Pl~~~d~~~~~DGAaAvvl~s~~~a~~l~~ 230 (385)
T PRK06066 151 VKFMSRKGITREDLALVVEKNKKAGLSNPRASYASNISLEDVLSSEYVVYPLTELDIAPFVDGAIVVVLASEEVAKKLTD 230 (385)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCchhhccCCCCCceEEEEEeCHHHHHhcCC
Confidence 0 000 112111 111111 123444799999999999999999887
Q ss_pred eEeEEEEeEEeeCCCCCCCCCCCC-cHHHHHHHHHHHHHh
Q 018905 310 KIYAEVRGYGMSGDAHHITQPHID-GKGAILAMTRALKQA 348 (349)
Q Consensus 310 ~~~a~i~g~~~~~d~~~~~~p~~~-g~~~~~a~~~Al~~A 348 (349)
++. +|+|++..++.......+.. ......++++||++|
T Consensus 231 ~pv-~I~g~g~~~~~~~~~~~~~~~~~~~~~Aa~~a~~~A 269 (385)
T PRK06066 231 DPV-WIKGIGWSTESSNLETAELGKANYMRIAADMAYKMA 269 (385)
T ss_pred CCE-EEEEEEEecCCcccccccccccHHHHHHHHHHHHHc
Confidence 774 99999987764433222221 233347899999876
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=120.21 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+++|+++++++ .+++++...+.. ....+.+|+..+|
T Consensus 53 ~~~la~~A~~~al~~ag~~~~~Id-----~li~~~~~~~~~--------------------------~~~~a~~l~~~lg 101 (325)
T PRK12879 53 TSDLAIKAAERALARAGLDAEDID-----LIIVATTTPDYL--------------------------FPSTASQVQARLG 101 (325)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCCC--------------------------CChHHHHHHHHhC
Confidence 578999999999999999988887 788877542210 1134567888999
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
++. +.+.|+.+|+|++.||..|..+|++|.++.+||+++|.+.... . ++.....+
T Consensus 102 ~~~~~~~~v~~~C~~~~~al~~A~~~l~~g~~~~~Lvv~~e~~s~~~-----------~-------------~~~~~~~~ 157 (325)
T PRK12879 102 IPNAAAFDINAACAGFLYGLETANGLITSGLYKKVLVIGAERLSKVT-----------D-------------YTDRTTCI 157 (325)
T ss_pred CCCCcEEEECccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCcC-----------C-------------ccccCceE
Confidence 974 8899999999999999999999999999999999999732110 0 11112457
Q ss_pred eecceeeeEEeCChH
Q 018905 288 VIGEGSGVLVLEELE 302 (349)
Q Consensus 288 ~~gEGAaalvL~~~~ 302 (349)
++||||+|+||++.+
T Consensus 158 ~~GDgAaA~ll~~~~ 172 (325)
T PRK12879 158 LFGDGAGAVVLEATE 172 (325)
T ss_pred EEeecceEEEEEecC
Confidence 899999999999754
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.3e-12 Score=117.42 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+++|+++++++ .+++++...+. . ....+.+++..+|
T Consensus 51 ~~~la~~A~~~al~~agl~~~~Id-----~~i~~~~~~~~---------------------~-----~~~~a~~l~~~lG 99 (318)
T TIGR00747 51 SSTMGFEAAKRAIENAGISKDDID-----LIIVATTTPDH---------------------A-----FPSAACMVQAYLG 99 (318)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCCC---------------------C-----CChHHHHHHHHhC
Confidence 578999999999999999998887 88888753221 0 0123567899999
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
+++ |.+.|..+|+|++.||..|+.+|++|.++.+||+++|.+.... .+.+ ....+
T Consensus 100 l~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~~Lvv~~e~~~~~~-----------------------~~~~-~~~~~ 155 (318)
T TIGR00747 100 IKGIPAFDLSAACAGFIYALSVAKQYIESGKYKTVLVVGAEKLSSTL-----------------------DWTD-RGTCV 155 (318)
T ss_pred CCCCcEeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCcC-----------------------CcCC-CCeEE
Confidence 988 8999999999999999999999999999999999999732211 0111 12356
Q ss_pred eecceeeeEEeCChHH
Q 018905 288 VIGEGSGVLVLEELEH 303 (349)
Q Consensus 288 ~~gEGAaalvL~~~~~ 303 (349)
++||||+|+||++.+.
T Consensus 156 ~~GDGAaA~lL~~~~~ 171 (318)
T TIGR00747 156 LFGDGAGAVVLGESED 171 (318)
T ss_pred EEecceeEEEEeecCC
Confidence 7999999999987543
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=118.72 Aligned_cols=118 Identities=20% Similarity=0.233 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+++|+++++|+ .+++++..+.. . . ..+..|...||
T Consensus 96 ~~~La~~Aa~~aL~~agi~~~dId-----~li~~s~~~~~----------------------~---~--~~a~~v~~~LG 143 (379)
T PLN02326 96 LTSLAVEAAKKALEMAGVDPEDVD-----LVLLCTSSPDD----------------------L---F--GSAPQVQAALG 143 (379)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCc----------------------c---C--cHHHHHHHHhC
Confidence 578999999999999999988887 77787753221 0 0 12456888899
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
+.+ +++.|..+|++++.||.+|.++|++|.++.+||+++|.+ +... .++...+.+
T Consensus 144 ~~~~~~~dv~~~Ca~~~~aL~~A~~~l~~g~~~~vLVv~~e~~-s~~~-----------------------~~~d~~~~~ 199 (379)
T PLN02326 144 CTNALAFDLTAACSGFVLGLVTAARFIRGGGYKNVLVIGADAL-SRYV-----------------------DWTDRGTCI 199 (379)
T ss_pred CCCCceeeccccchHHHHHHHHHHHHHHcCCCCEEEEEEechh-cCCC-----------------------CccccCceE
Confidence 866 789999999999999999999999999999999999972 1110 011223456
Q ss_pred eecceeeeEEeCChH
Q 018905 288 VIGEGSGVLVLEELE 302 (349)
Q Consensus 288 ~~gEGAaalvL~~~~ 302 (349)
++||||+|+||++.+
T Consensus 200 lfGDGAaAvlL~~~~ 214 (379)
T PLN02326 200 LFGDGAGAVVLQACD 214 (379)
T ss_pred EEcceeEEEEEEEcC
Confidence 899999999999754
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-12 Score=116.92 Aligned_cols=118 Identities=15% Similarity=0.190 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+++|+++++++ .+++|++..... + ..+..++..+|
T Consensus 51 ~~~la~~A~~~aL~~ag~~~~dId-----~vi~~s~~~~~~---------------------~------~~~~~v~~~Lg 98 (326)
T CHL00203 51 LTKLAAEAANKALDKAHMDPLEID-----LIILATSTPDDL---------------------F------GSASQLQAEIG 98 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCCC---------------------C------chHHHHHHHhC
Confidence 578999999999999999998887 788887432210 0 01245778888
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
+++ +.+.|..+|+|++.||..|.++|++|.++.+||+|+|.+. ... +++...+.+
T Consensus 99 ~~~~~~~~v~~~Casg~~al~~A~~~i~sg~~~~~Lvv~~e~~s-~~~-----------------------~~~~~~~~~ 154 (326)
T CHL00203 99 ATRAVAFDITAACSGFILALVTATQFIQNGSYKNILVVGADTLS-KWI-----------------------DWSDRKTCI 154 (326)
T ss_pred CCCCceeeecccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhh-CcC-----------------------CcccCCceE
Confidence 876 7899999999999999999999999999999999999722 110 011122467
Q ss_pred eecceeeeEEeCChH
Q 018905 288 VIGEGSGVLVLEELE 302 (349)
Q Consensus 288 ~~gEGAaalvL~~~~ 302 (349)
++||||+|+||++.+
T Consensus 155 ~fgDga~A~ll~~~~ 169 (326)
T CHL00203 155 LFGDGAGAAIIGASY 169 (326)
T ss_pred EEcceeeEEEEEEcC
Confidence 899999999998743
|
|
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=110.44 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||++||+++++++ .+++|+.. +. ...+..++..||
T Consensus 50 e~eLa~eAa~~ALekAGL~~~DID-----~IIvGdl~-~Q----------------------------~~~As~vA~~LG 95 (327)
T TIGR02845 50 ERKLMEDAVNLALKKANLKKDDVD-----FFLAGDLL-NQ----------------------------IITANFVARDLG 95 (327)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeCCC-Cc----------------------------ccHHHHHHHHhC
Confidence 467999999999999999999887 78887521 00 124567888888
Q ss_pred CCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcce
Q 018905 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (349)
Q Consensus 209 l~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~~ 288 (349)
+ |.+.|.++|+|+..||..|..+|++|.+|.+||++++.+.+..... +... ..+.- .......
T Consensus 96 I--P~fdV~~ACSTf~~AL~lAa~lI~SG~ad~VLVV~Ssh~S~AErqf-----r~p~------eyg~q----~~~ta~~ 158 (327)
T TIGR02845 96 I--PFLGLYGACSTSMETLALGAMLVDGGFADRVLAATSSHYATAERQF-----RYPT------EYGVQ----KPPTAQW 158 (327)
T ss_pred C--CEEEEeccCHHHHHHHHHHHHHHhCCCCCEEEEEEecccchhhhhc-----cccc------ccccC----CCCeeeE
Confidence 7 8899999999999999999999999999999999998743332110 0000 00111 1223567
Q ss_pred ecceeeeEEeCChHHHHhcCCeEeEEEEeE--EeeCCCCCCCCCCCCcHHHHHHHHHHHH
Q 018905 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGY--GMSGDAHHITQPHIDGKGAILAMTRALK 346 (349)
Q Consensus 289 ~gEGAaalvL~~~~~A~~~g~~~~a~i~g~--~~~~d~~~~~~p~~~g~~~~~a~~~Al~ 346 (349)
.++||+|+||++.+ ..|+ |.+. |-.-| +.+.+|...|.+++.|...-+.
T Consensus 159 tgdGAGA~vl~~~~------~~~~--i~~~t~gkv~d-~g~~d~~nmgaamapaa~dti~ 209 (327)
T TIGR02845 159 TVTGAGAVLLASTG------GGPR--ITSATIGKVVD-YGITDPLDMGAAMAPAAADTIE 209 (327)
T ss_pred EEcccEEEEEeecC------CCCc--eEEEEEEEEEe-cCCCCcccchhhhhHHHHHHHH
Confidence 89999999998752 2222 2222 11112 3455677777766666555443
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-12 Score=117.33 Aligned_cols=120 Identities=22% Similarity=0.255 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
....|+.+|+.+||+++|+++++++ .+++++...... ....+.+|+..+
T Consensus 49 ~~~~la~~A~~~al~~ag~~~~~Id-----~li~~~~~~~~~--------------------------~~~~~~~l~~~l 97 (320)
T cd00830 49 TTSDLAVEAAKKALEDAGIDADDID-----LIIVATSTPDYL--------------------------FPATACLVQARL 97 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCCC--------------------------CCcHHHHHHHHh
Confidence 3578999999999999999988887 788887542210 012456788999
Q ss_pred CC-CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 208 GF-QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 208 gl-~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
|+ ..|.+.|..+|+|++.||.+|.++|++|.++.+||+++|.+.... -|+....+
T Consensus 98 g~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~------------------------~~~~~~~~ 153 (320)
T cd00830 98 GAKNAAAFDINAACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLSRIL------------------------DWTDRSTA 153 (320)
T ss_pred CCCCCcEeeccccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcccc------------------------CcccCCce
Confidence 99 558999999999999999999999999999999999999732211 02223457
Q ss_pred ceecceeeeEEeCChH
Q 018905 287 FVIGEGSGVLVLEELE 302 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~ 302 (349)
+++||||+|+||++.+
T Consensus 154 ~~~GDgAaA~ll~~~~ 169 (320)
T cd00830 154 VLFGDGAGAVVLEATE 169 (320)
T ss_pred EEEeccceEEEEEecC
Confidence 8999999999999754
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=115.10 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+..|+.+||+++|+++++++ .+++++...... ....+.+|+..+|
T Consensus 48 ~~~l~~~a~~~aL~~ag~~~~~Id-----~li~~~~~~~~~--------------------------~~~~~~~i~~~lg 96 (324)
T cd00827 48 VPTMAVEAARRALERAGIDPDDIG-----LLIVATESPIDK--------------------------GKSAATYLAELLG 96 (324)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCCC--------------------------CccHHHHHHHHcC
Confidence 578999999999999999998887 888887542210 1134567888999
Q ss_pred C-CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 F-QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l-~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
+ ..|.+.|..+|+|++.||..|.++|++|.++.+||+++|.+..... ..+.+++
T Consensus 97 ~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vlvv~~e~~~~~~~-------------------------~~~~~~~ 151 (324)
T cd00827 97 LTNAEAFDLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLLD-------------------------EGSALEP 151 (324)
T ss_pred CCCCceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEEHHhhhccc-------------------------CCCCccc
Confidence 9 4599999999999999999999999999999999999997322210 2244678
Q ss_pred eecceeeeEEeCChHH
Q 018905 288 VIGEGSGVLVLEELEH 303 (349)
Q Consensus 288 ~~gEGAaalvL~~~~~ 303 (349)
++||||+|+||++.+.
T Consensus 152 ~~gdgaaA~ll~~~~~ 167 (324)
T cd00827 152 TLGDGAAAMLVSRNPG 167 (324)
T ss_pred cccCceEEEEEecCcc
Confidence 9999999999998654
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=115.80 Aligned_cols=183 Identities=21% Similarity=0.157 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+||||++++|+ ++++++. ... ....++..+|
T Consensus 24 ~~~L~~eA~~~Al~DAgl~~~dID-----~~~~~~~-~~~------------------------------~~~~l~~~lG 67 (386)
T PRK07855 24 ELRLACEAVLAALDDAGLAPSDVD-----GLVTFTM-DTN------------------------------PEIAVARALG 67 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEecC-ccc------------------------------cHHHHHHHCC
Confidence 366999999999999999998887 7776431 100 0023778899
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeec--CCCCChH------------H---HHHHH-hccccc--
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGT--ESSIDAL------------S---MAGFC-KSRALT-- 266 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~--d~~~~~~------------~---~~~~~-~~~~l~-- 266 (349)
+.+ |...|.++|+|+..+|..|+..|++|.+|+|||.|+ +...... . ...+. ..+...
T Consensus 68 l~~~~~~~~v~~gg~sg~~~~~~A~~~I~sG~~d~vLv~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 147 (386)
T PRK07855 68 IGELKFFSRIHYGGGAACATVQQAAMAVATGVADVVVCYRAFNERSGMRFGQGQTGLAENPTSTGVDYGWSYPHGLLTPA 147 (386)
T ss_pred CCCCcceeeecCCcHHHHHHHHHHHHHHHCCCCCEEEEEeecccccccccccccccccccccccccchhhhhhcCCCChH
Confidence 976 446789999999999999999999999999999987 2210000 0 00000 011000
Q ss_pred -------c----ccC------------------CCCCCCC--CCCCCC--------------CCcceecceeeeEEeCCh
Q 018905 267 -------T----KYN------------------GTPQEAS--RPFDCG--------------RDGFVIGEGSGVLVLEEL 301 (349)
Q Consensus 267 -------~----~~~------------------~~~~~~~--~pf~~~--------------~~G~~~gEGAaalvL~~~ 301 (349)
+ +|. .+|.... +|++.+ -+...++|||+++||.++
T Consensus 148 ~~~al~a~~ym~~~G~t~e~lA~vavk~~~~A~~NP~A~~~~~~~t~e~vl~s~~Ia~Pl~~~d~~~~sDGAaAvvl~se 227 (386)
T PRK07855 148 AWVAMLARRYMHEYGATSEDFGRVAVADRKHAATNPKAWFYGRPITLEDHQNSRWIAEPLRLLDCCQESDGAVALVVTSA 227 (386)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcChHhhhcCCCCCHHHHhcCCcccCCchhhhcCCcCCceEEEEEecH
Confidence 0 000 1232221 233211 233347999999999999
Q ss_pred HHHHhcCCeEeEEEEeEEeeCCCCCCC-----CCCCC-cHHHHHHHHHHHHHh
Q 018905 302 EHAKKRGAKIYAEVRGYGMSGDAHHIT-----QPHID-GKGAILAMTRALKQA 348 (349)
Q Consensus 302 ~~A~~~g~~~~a~i~g~~~~~d~~~~~-----~p~~~-g~~~~~a~~~Al~~A 348 (349)
+.|++.+.++ .+|.|++..++..... .++.. ......++++||++|
T Consensus 228 e~A~~l~~~p-v~I~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~aa~~a~~~A 279 (386)
T PRK07855 228 ERARDLKQRP-AVIKAAAQGSGADQYMMTSYYRDDITGLPEMGLVARQLWAQS 279 (386)
T ss_pred HHHhhCCCCC-EEEEEEEEecCCccccccccccccccccchHHHHHHHHHHHc
Confidence 9999887776 5999998876543211 11221 133457889998875
|
|
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=105.97 Aligned_cols=159 Identities=21% Similarity=0.173 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||++||+++++|+ .+|+|+..+. ...+..++..+|
T Consensus 56 eseLa~eAa~~ALekAGI~~~DID-----~lI~Gdll~Q-----------------------------~~sAs~vA~~LG 101 (337)
T PRK08304 56 ERKMMEDAIQQALQKANLKKSDID-----YLLAGDLLNQ-----------------------------IISANFAARELG 101 (337)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCC-----------------------------cchHHHHHHHhC
Confidence 467999999999999999999998 8888863110 123456677777
Q ss_pred CCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcce
Q 018905 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (349)
Q Consensus 209 l~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~~ 288 (349)
+ |.+-|.++|+|+..||.+|..+|++|.+|.+||++++.+.+...- | +. ....+.-+|.. -.-
T Consensus 102 I--Pa~dV~gACST~~~AL~lAa~lI~SG~ad~VLVV~Ssh~s~aerq--f---r~------P~eyg~qrp~t----aqw 164 (337)
T PRK08304 102 I--PFLGLYGACSTMMESLALGSMLIDGGFADRVLAATSSHFATAERQ--F---RF------PTEYGGQRPPT----AQW 164 (337)
T ss_pred C--cEEEEeccCHHHHHHHHHHHHHHhcCCCCEEEEEEcchhhhhhhh--c---cC------chhccccCCCc----ceE
Confidence 6 999999999999999999999999999999999999873332110 0 00 00112223322 234
Q ss_pred ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHH
Q 018905 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRAL 345 (349)
Q Consensus 289 ~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al 345 (349)
.++||+|+||.+. +..|+.+=.-.|-.-| +.+.+|...|.+++.|...-+
T Consensus 165 tvtGAGA~i~~~~------~~~~~i~~~t~Gkv~D-~g~~d~~nmgaaMapAa~dti 214 (337)
T PRK08304 165 TVTGAGAVLLSRE------GSGPRITHATIGKVVD-LGIKDPNDMGAAMAPAAADTI 214 (337)
T ss_pred EeeccEEEEEecC------CCCceEEEEeEEEEEe-cCCCCcccchhhhhHHHHHHH
Confidence 6889999999863 3344322122222222 455677777776666655544
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=112.93 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHCCCC--CCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 129 FIAYALCAADEALHDAKWL--PSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~--~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
...|+.+|+.+||+|||+. +.+|+ ++++++..... .+.....++..
T Consensus 27 ~~~L~~eA~~~Al~DAGl~~~~~dID-----~v~v~~~~~~~---------------------------~~~~~~~la~~ 74 (498)
T PRK08257 27 PVDLMAAAARAAAADAGADAVLEAID-----SVAVVNQLSWR---------------------------YRDPPGLLAER 74 (498)
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHCC-----EEEEecccccc---------------------------ccCHHHHHHHH
Confidence 4679999999999999998 88887 88887532110 01223568888
Q ss_pred cCCCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHH----------------------------
Q 018905 207 YGFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA---------------------------- 257 (349)
Q Consensus 207 lgl~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~---------------------------- 257 (349)
+|+.. +......+|.|+..+|..|+..|++|++|+|||+|+|.+.+.....
T Consensus 75 lGl~p~~~~~~~~GG~s~~~~v~~Aa~~IasG~advVLv~G~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (498)
T PRK08257 75 LGADPARTVYSPVGGNSPQRLVNEAALRIAAGEADVALVAGAEAQSTATKLRKAGEKLDWTPQDEGPLADRGGDPRPMAS 154 (498)
T ss_pred cCCCCcceeEecCCCHHHHHHHHHHHHHHHCCCCCEEEEeeeeeccccchhccccccccccccccccccccccccccccc
Confidence 99964 4545667888999999999999999999999999999743210000
Q ss_pred HHH-hccccc-------------cccC----------------------CCCC--------------------CCCCCCC
Q 018905 258 GFC-KSRALT-------------TKYN----------------------GTPQ--------------------EASRPFD 281 (349)
Q Consensus 258 ~~~-~~~~l~-------------~~~~----------------------~~~~--------------------~~~~pf~ 281 (349)
.+. ..+... .+|. .+|. -.+-||.
T Consensus 155 ~~e~~~G~~~p~~~yal~a~ay~~~~G~t~e~~~a~~a~l~~~~~~~Aa~NP~A~~r~~~t~eevl~~~~~~rmIa~Pl~ 234 (498)
T PRK08257 155 PAELRHGLDRPVYVYPLFENALRAALGRSPEEHRAEMGELWAPFSAVAAKNPHAWIPRERSAEEIVTPTPDNRMIAWPYT 234 (498)
T ss_pred hhhhhcCCCCcchHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhhCHHHhhCCCCCHHHHhcccCCCCeeeCCcc
Confidence 000 000000 0000 0111 1223343
Q ss_pred CCCCcceecceeeeEEeCChHHHHhcCC--eEeEEEEeEEeeCCCCCCCC-CCCC-cHHHHHHHHHHHHHh
Q 018905 282 CGRDGFVIGEGSGVLVLEELEHAKKRGA--KIYAEVRGYGMSGDAHHITQ-PHID-GKGAILAMTRALKQA 348 (349)
Q Consensus 282 ~~~~G~~~gEGAaalvL~~~~~A~~~g~--~~~a~i~g~~~~~d~~~~~~-p~~~-g~~~~~a~~~Al~~A 348 (349)
...+....+|||+++||.+++.|++.+. ....+|.|++..++...+.. ++.. ......++++||++|
T Consensus 235 ~ldca~~~~DGaaAvil~S~e~A~~l~~~~~~~V~i~g~a~~~~~~~~~~r~~~~~~~~~~~aa~~a~~~A 305 (498)
T PRK08257 235 KLMNANDMVDQGAAVLLTSVAKARRLGVPEDRWVYLHGGADAHDPYDILERPDLHRSPAIRAAGRRALALA 305 (498)
T ss_pred HhhcCCCCcccceEEEEeeHHHHHhcCCCCCceEEEEEEEEeeCccccccccccccChHHHHHHHHHHHHh
Confidence 3333334799999999999999998872 22478999999988655432 2322 234456889999876
|
|
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.8e-11 Score=110.38 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCC-CChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGI-GSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
...|+.+|+++||+++|+++++|+ .+++.++. .+. .....+.+|+..+
T Consensus 53 ~~~la~~Aa~~aL~~ag~~~~dId-----~li~~~~~~~~~--------------------------~~p~~a~~l~~~l 101 (339)
T PRK06840 53 TSDMAIAAAKPALKQAGVDPAAID-----VVIYIGSEHKDY--------------------------PVWSSAPKIQHEI 101 (339)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeccCCCCC--------------------------CCCchHHHHHHHh
Confidence 578999999999999999998887 67654422 111 0012346788889
Q ss_pred CCCC-CeeecccchhhHHHHHHHHHHHHHc-CCCCEEEEeecCC
Q 018905 208 GFQG-PNHAAVTACATGAHSIGDAARMIQF-GDSDVMVAGGTES 249 (349)
Q Consensus 208 gl~G-p~~~v~~acaS~~~Al~~A~~~I~~-G~~d~~lvgg~d~ 249 (349)
|++. +.+.|..+|++++.||..|.++|++ |.++.+||+++|.
T Consensus 102 Gl~~~~~~~v~~~C~~~~~al~~A~~~l~~~g~~~~~Lvv~~~~ 145 (339)
T PRK06840 102 GAKNAWAFDIMAVCASFPIALKVAKDLLYSDPSIENVLLVGGYR 145 (339)
T ss_pred CCCCcccccccccchHHHHHHHHHHHHHhcCCCccEEEEEeecc
Confidence 9966 7888999999999999999999999 9999999999886
|
|
| >KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-11 Score=104.80 Aligned_cols=183 Identities=27% Similarity=0.462 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
+++|...|+..||+.+++..+.++ .|++|+......+ . -.++.++....|
T Consensus 28 aTdL~~~AakAAL~aa~v~~e~VD-----~VI~GNV~aSSsD-----------------g--------IYl~RHvGL~~G 77 (396)
T KOG1391|consen 28 ATDLGVVAAKAALKAANVGAEAVD-----HVIMGNVLASSSD-----------------G--------IYLARHVGLRVG 77 (396)
T ss_pred hhhHHHHHHHHHHhhcCCChhhcc-----eEEEeeeeeccCC-----------------c--------eEeeeccccccC
Confidence 577888999999999999988776 6666653211100 0 012233333334
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHHH--------------------HH----HH-
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALSM--------------------AG----FC- 260 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~~--------------------~~----~~- 260 (349)
+ .-|..+|+.-|.|+++++-.+++.|.-|+.+++|+||+|.|.. |+.. .. +.
T Consensus 78 vP~e~pALtiNRLCGSGFQsiVNgaQ~I~vgea~ivL~GGtEnMSq~Pf~vRnvRFGT~LG~~y~lED~LW~sLtD~y~k 157 (396)
T KOG1391|consen 78 VPKETPALTINRLCGSGFQSIVNGAQEICVGEAEIVLCGGTENMSQAPFCVRNVRFGTKLGSDYKLEDSLWVSLTDQYVK 157 (396)
T ss_pred CcCccCceeehhhhcccHHHHHhhHHHhhcCcceEEEecCccccccCcceeeeeeeccccccccchhhhHhhhccchhhh
Confidence 4 4489999999999999999999999999999999999998532 1100 00 00
Q ss_pred -hccc----cccccC---------------------------C----------------CCCCCCCC-------------
Q 018905 261 -KSRA----LTTKYN---------------------------G----------------TPQEASRP------------- 279 (349)
Q Consensus 261 -~~~~----l~~~~~---------------------------~----------------~~~~~~~p------------- 279 (349)
.|.. +..+|. + .-++..||
T Consensus 158 LpMa~TAEnL~~qyKisRee~DefaL~SQ~~Wkkaq~aG~fn~Ei~pI~~K~kkge~~f~vDEHpRp~TT~E~L~KLppv 237 (396)
T KOG1391|consen 158 LPMAMTAENLAVQYKISREECDEFALQSQQRWKKAQDAGYFNDEIAPIEVKTKKGEQTFQVDEHPRPQTTLEQLQKLPPV 237 (396)
T ss_pred cchhhhHHHhhhhheecHHHhhHHHhhhHHHHHhhhhcCcccccccceEEeeccCceeeEecCCCCccchHHHHhhCCch
Confidence 0000 000000 0 01111222
Q ss_pred CCCCCCcce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 280 FDCGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 280 f~~~~~G~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|. .+|++ ++|||+++|+.+++..++.+.+|+++|.++..... .|+..|.++..||+.+|+.+
T Consensus 238 Fk--KdG~VtAGnASGi~DGA~AvivAsEdavK~~NlkPLARiVays~vGc-----dP~IMGIGPvPAI~~vLKks 306 (396)
T KOG1391|consen 238 FK--KDGTVTAGNASGIADGAGAVIVASEDAVKKHNLKPLARIVAYSVVGC-----DPSIMGIGPVPAISGVLKKS 306 (396)
T ss_pred hc--cCCeeeccccccccCCceeEEEechhHHhhcCCchhhhhheeeeecc-----ChhhccccCcHHHHHHHHHc
Confidence 22 33444 78999999999999999999999999999987664 57777888899999998753
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=107.60 Aligned_cols=115 Identities=22% Similarity=0.276 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+++|+++||+++|+++++|+ .+++++..+... + ...+..+...+|
T Consensus 50 ~~~la~~Aa~~aL~~agl~~~dID-----~li~~s~~~~~~---------------------~-----p~~a~~v~~~LG 98 (345)
T TIGR00748 50 TATIGVEAARNALKRAKIDPKDIG-----AVYVGSESHPYA---------------------V-----KPTATIVAEAIG 98 (345)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCcc---------------------c-----cchHHHHHHHcC
Confidence 578999999999999999999888 888877443211 0 112456888899
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
+. -+.+.|..+|+++..||..|..+|++|.++.+||++.|.+.. . +... .-
T Consensus 99 l~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~~~vLVv~~d~~~~-------------~------~~~~--------~~ 151 (345)
T TIGR00748 99 ATPDLTAADLEFACKAGTAGIQACMGLVASGMIKYGLAIGADTAQG-------------A------PGDA--------LE 151 (345)
T ss_pred CCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeccc-------------C------CCcc--------Cc
Confidence 85 378899999999999999999999999999999999997310 0 1001 11
Q ss_pred ceecceeeeEEeCCh
Q 018905 287 FVIGEGSGVLVLEEL 301 (349)
Q Consensus 287 ~~~gEGAaalvL~~~ 301 (349)
+..||||+|+||++.
T Consensus 152 ~~~GDGAaA~vl~~~ 166 (345)
T TIGR00748 152 YTAGAGGAAYIIGEK 166 (345)
T ss_pred ccCCCceEEEEEccC
Confidence 456999999999864
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-10 Score=106.36 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+..|+++||+++|+++++|+ .++++++.+++ . ....+.+|+..||
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~~~Id-----~li~~t~~~d~---------------------~-----~p~~a~~v~~~Lg 100 (326)
T PRK05963 52 LSDLAASAGDMALSDAGIERSDIA-----LTLLATSTPDH---------------------L-----LPPSAPLLAHRLG 100 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCCC---------------------C-----CCcHHHHHHHHhC
Confidence 578999999999999999998887 78888854321 1 1124567888999
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
+.. +++.|.++|++++.||..|..+|+.|. +.+||+++|... . .+. | +....++
T Consensus 101 ~~~~~~~di~~~C~g~~~aL~~A~~~l~~~~-~~aLVv~~d~~s-~----------~~~------------~-~~~~~~~ 155 (326)
T PRK05963 101 LQNSGAIDLAGACAGFLYALVLADGFVRAQG-KPVLVVAANILS-R----------RIN------------M-AERASAV 155 (326)
T ss_pred CCCCceeeccchhhHHHHHHHHHHHHHHcCC-CeEEEEEechhh-c----------cCC------------c-cccCceE
Confidence 955 889999999999999999999999985 889999998621 1 011 0 1112467
Q ss_pred eecceeeeEEeCChH
Q 018905 288 VIGEGSGVLVLEELE 302 (349)
Q Consensus 288 ~~gEGAaalvL~~~~ 302 (349)
++||||+|+||++.+
T Consensus 156 lfGDgA~A~ll~~~~ 170 (326)
T PRK05963 156 LFADAAGAVVLAPSA 170 (326)
T ss_pred EEeecceEEEEEecC
Confidence 899999999998643
|
|
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=108.32 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+++|+++++|+ .+++++..+.+. .+ ..+.+++..+|
T Consensus 51 ~~~la~~Aa~~aL~~ag~~~~dId-----~li~~s~~~~~~-------------------------~p-~~a~~v~~~Lg 99 (347)
T PRK04262 51 TATIAVEAARNALKRAGIDPKEIG-----AVYVGSESHPYA-------------------------VK-PTATIVAEALG 99 (347)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCcc-------------------------cc-cHHHHHHHHcC
Confidence 578999999999999999998887 788887543211 01 12346788899
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCC
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTES 249 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~ 249 (349)
+.. +.+.+..+|++++.+|..|..+|++|.++.+||+++|.
T Consensus 100 l~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~aLVv~~e~ 142 (347)
T PRK04262 100 ATPDLTAADLEFACKAGTAALQAAMGLVKSGMIKYALAIGADT 142 (347)
T ss_pred CCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Confidence 964 77889999999999999999999999999999999996
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=107.31 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
....|+..|+++||+++|+++++|+ .+++++..+++. ....+.+|...|
T Consensus 59 ~~~~la~~Aa~~aL~~a~~~~~dId-----~lI~~t~t~d~~--------------------------~P~~a~~v~~~L 107 (353)
T PRK12880 59 CVSDLGKHAANTLLQGLNIDKNSLD-----ALIVVTQSPDFF--------------------------MPSTACYLHQLL 107 (353)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCCC--------------------------CCcHHHHHHHHh
Confidence 3678999999999999999999887 888888654321 124567888899
Q ss_pred CCCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCC
Q 018905 208 GFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (349)
Q Consensus 208 gl~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~ 285 (349)
|++. +.+-|..+|++++.+|..|..+|++|..+ +||+++|.. +.. + .| +....
T Consensus 108 g~~~~~~~~di~~~C~g~~~aL~~A~~~i~~~~~~-~LVv~~e~~-S~~----------~------------~~-~d~~~ 162 (353)
T PRK12880 108 NLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLGK-ILLICGDTL-SKF----------I------------HP-KNMNL 162 (353)
T ss_pred CCCCCceEEehhhhhHHHHHHHHHHHHHHHcCCCC-EEEEEehhh-hcc----------C------------Cc-ccCCc
Confidence 9963 78899999999999999999999999999 888888862 111 0 01 11122
Q ss_pred cceecceeeeEEeCChH
Q 018905 286 GFVIGEGSGVLVLEELE 302 (349)
Q Consensus 286 G~~~gEGAaalvL~~~~ 302 (349)
..++||||+|+||++.+
T Consensus 163 ~~lFGDGAaA~vl~~~~ 179 (353)
T PRK12880 163 APIFGDGVSATLIEKTD 179 (353)
T ss_pred eeeecccceEEEEEecC
Confidence 45789999999998643
|
|
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.9e-10 Score=96.42 Aligned_cols=123 Identities=21% Similarity=0.270 Sum_probs=110.5
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhh
Q 018905 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (349)
Q Consensus 117 ~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
+|++.+.|++++..||++.++.+++.+. .+++ .+|+++..|+.......++.+.+.+ .++|..|...++
T Consensus 22 ~lp~m~rRRls~~~rla~~~a~~~~~~~----~~~d-----~~VfaS~~Gel~~t~~ll~~l~~~~--~lSPT~Fs~SVH 90 (218)
T PF13723_consen 22 FLPPMQRRRLSRLSRLALEAALECLAED----EQPD-----AIVFASRHGELERTFKLLEALAEEE--ELSPTAFSQSVH 90 (218)
T ss_pred cCCHHHHcccCHHHHHHHHHHHHHHhcc----CCCC-----cEEEEeCCCcHHHHHHHHHHHHhCC--CcCccchhhhhh
Confidence 4899999999999999999999998652 1222 7899999999999999999988754 599999999999
Q ss_pred hHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
|.+++++++..+.++|+.+|..+..|...||..|+..|+.| .+-|||+.+|...
T Consensus 91 NA~aG~~sI~~~~~~~~tal~a~~~sf~~aLleA~~~l~~~-~~~VLlv~~De~~ 144 (218)
T PF13723_consen 91 NAAAGYWSIATKNTGPNTALAAGEDSFEAALLEAAAQLAEG-AEPVLLVCYDEPL 144 (218)
T ss_pred hHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHHHHHcC-CCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999 8999999999833
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.7e-10 Score=105.17 Aligned_cols=164 Identities=13% Similarity=0.027 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+|||+++++|+ +++.+.. +.+. ... +.. ..+...+|
T Consensus 24 ~~el~~eA~~~Al~DAgl~~~dID-----~~~~~~~-~~~~----------------~~~------~~~---~~~~~~~G 72 (352)
T PRK07937 24 GVEMLMPCFAELYAELGITKSDIG-----FWCSGSS-DYLA----------------GRA------FSF---ISAIDSIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcc-cccc----------------ccc------cch---hhHHhhcc
Confidence 367999999999999999999887 6654432 0000 000 000 11334466
Q ss_pred CC-C-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHH--------HH-hcc-------cc-c---
Q 018905 209 FQ-G-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAG--------FC-KSR-------AL-T--- 266 (349)
Q Consensus 209 l~-G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~--------~~-~~~-------~l-~--- 266 (349)
+. + |...++ ++|..||..|+..|++|.+|+|||.|.+++........ +. ..+ .+ .
T Consensus 73 ~~~~~~~~~v~---~~g~~a~~~A~~aI~sG~~d~VLv~g~~k~~~~~~~~~~~~~~~~~~~~p~G~~~~~~~Al~a~~y 149 (352)
T PRK07937 73 AVPPINESHVE---MDAAWALYEAWVKLLTGEVDTALVYGFGKSSAGTLRRVLALQLDPYTVAPLWPDSVSMAGLQARAG 149 (352)
T ss_pred CCCCCceEEec---CcHHHHHHHHHHHHhcCCCCEEEEEEecccCccchhhhhhccCCcceeccCCCchHHHHHHHHHHH
Confidence 63 3 455555 46888999999999999999999999996421000000 00 000 00 0
Q ss_pred -cccC------------CCCCCCCCCCCCC-------------------CCcceecceeeeEEeCChHHHHhcCCeEeEE
Q 018905 267 -TKYN------------GTPQEASRPFDCG-------------------RDGFVIGEGSGVLVLEELEHAKKRGAKIYAE 314 (349)
Q Consensus 267 -~~~~------------~~~~~~~~pf~~~-------------------~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~ 314 (349)
++|. ...+....|+... -+...++|||+++||.+++.|++.+.++ ++
T Consensus 150 m~~yG~t~e~lA~vavk~r~nA~~NP~A~~rit~edvl~s~~ia~PL~l~d~~~~~DGAaA~vl~s~~~A~~l~~~p-v~ 228 (352)
T PRK07937 150 LDAGKWTEEQMAEVAARSRADARRNPSAEPSISVDELLARPYFADPLRRHDIAPITDGAAAVVLAAGDRARELRERP-AW 228 (352)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhCchhhccCCHHHHhcCCcccCCchhhcCCCCCCcceEEEEecHHHHHHcCCCc-EE
Confidence 0010 0111222222221 1233479999999999999999998877 89
Q ss_pred EEeEEeeCCCCCC
Q 018905 315 VRGYGMSGDAHHI 327 (349)
Q Consensus 315 i~g~~~~~d~~~~ 327 (349)
|.|++..++...+
T Consensus 229 I~g~~~~~~~~~~ 241 (352)
T PRK07937 229 ITGIEHRIESPSL 241 (352)
T ss_pred EEEEEEeeCCccc
Confidence 9999998776543
|
|
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-10 Score=105.35 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=95.4
Q ss_pred hhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHH
Q 018905 122 DHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASG 201 (349)
Q Consensus 122 ~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 201 (349)
..........|+.+|+.+||+++|+++++|+ .++++++.+ + .....+.
T Consensus 78 ~~~~~~~~~~la~~Aa~~aL~~a~~~~~~Id-----~li~~s~~~-~--------------------------~~P~~a~ 125 (361)
T cd00831 78 NDIALEEARELAEEAARGALDEAGLRPSDID-----HLVVNTSTG-N--------------------------PTPSLDA 125 (361)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCHHHCC-----EEEEECCCC-C--------------------------CCCCHHH
Confidence 3344456788999999999999999998887 788877542 1 0123456
Q ss_pred HHHHHcCCCC--Ceeecc-cchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 202 HVSMKYGFQG--PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 202 ~ia~~lgl~G--p~~~v~-~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
+|...+|++. +.+.|. .+|++++.||..|..+|++|..+.+||+++|....... ++.
T Consensus 126 ~i~~~lgl~~~~~~~dv~~~~C~~~~~al~~A~~~~~~~~~~~aLvv~~e~~s~~~~-----------------~~d--- 185 (361)
T cd00831 126 MLINRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEANPGARVLVVSTELCSLWYR-----------------GPD--- 185 (361)
T ss_pred HHHHHhCCCcccchhccccccchhHHHHHHHHHHHHHHCCCCEEEEEEeecccceeC-----------------CCC---
Confidence 7888899963 678898 89999999999999999999999999999997322100 000
Q ss_pred CCCCCCCcceecceeeeEEeCChHH
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEH 303 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~ 303 (349)
..+.--..+++||||+|+||++.+.
T Consensus 186 ~~~~~~~~~lfGDgaaA~ll~~~~~ 210 (361)
T cd00831 186 HRSMLVGNALFGDGAAAVLLSNDPR 210 (361)
T ss_pred cHHHhhhhhhccCCceEEEEEcCCC
Confidence 0000002567899999999998654
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=104.81 Aligned_cols=126 Identities=11% Similarity=0.066 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
.....|+.+|+.+||+++|+++++|+ .++++++. ++ . ....+..|...
T Consensus 104 e~~~~La~~Aa~~aL~~ag~~~~dId-----~lI~~t~t-~~---------------------~-----~P~~a~~l~~~ 151 (391)
T PLN03169 104 EAVTQMAVEASLACIKEWGRPVSDIT-----HLVYVSSS-EA---------------------R-----LPGGDLYLAKQ 151 (391)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHCC-----EEEEECcC-CC---------------------C-----CCcHHHHHHHH
Confidence 44677999999999999999998887 78888753 21 0 11345578888
Q ss_pred cCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCC
Q 018905 207 YGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (349)
Q Consensus 207 lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~ 283 (349)
||++.. .+.+..+|++++.+|..|..+|++|..+.|||+++|.. +.. +. . + .... ++..
T Consensus 152 LGl~~~~~~~~d~~~gC~g~~~aL~~A~~~~~~~~~~~vLvv~~e~~-s~~----~~---~--------~-~~~~-~~d~ 213 (391)
T PLN03169 152 LGLSPDVQRVMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSETT-ILG----FR---P--------P-SPDR-PYDL 213 (391)
T ss_pred hCcCCcceeeecccChhHHHHHHHHHHHHHHHhCCCCeEEEEEEEcC-hhh----cc---C--------C-Cccc-hhhh
Confidence 999652 47789999999999999999999999999999999972 111 00 0 0 0001 1112
Q ss_pred CCcceecceeeeEEeCChH
Q 018905 284 RDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 284 ~~G~~~gEGAaalvL~~~~ 302 (349)
....++||||+|+||+..+
T Consensus 214 ~~~~lFGDGAaA~vl~~~~ 232 (391)
T PLN03169 214 VGAALFGDGAAAVIIGADP 232 (391)
T ss_pred hhhhhccCceEEEEEecCC
Confidence 2346789999999999754
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-10 Score=106.87 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=96.5
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHH
Q 018905 121 KDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMAS 200 (349)
Q Consensus 121 ~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 200 (349)
+......-...|+.+|+.+||+++|+++++|+ .++++|+.+.. + ...+
T Consensus 93 r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId-----~lI~~T~Tg~~--------------------------~-Ps~a 140 (389)
T PLN03168 93 RHDIVVVQVPKLAAEAAQKAIKEWGGRKSDIT-----HIVFATTSGVN--------------------------M-PGAD 140 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCCC--------------------------C-ccHH
Confidence 33444456677999999999999999999988 88888865411 1 1356
Q ss_pred HHHHHHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 201 GHVSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 201 ~~ia~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.+|+..||++.- .+.+..+|++++.+|..|..+|++|....|||+++|.+...+ .. ++.
T Consensus 141 ~~l~~~LGl~~~~~r~~d~~~gC~g~~~aL~~A~~~i~~~~~~~VLVV~~E~~S~~~-----~~-----------~~~-- 202 (389)
T PLN03168 141 HALAKLLGLKPTVKRVMMYQTGCFGGASVLRVAKDLAENNKGARVLAVASEVTAVTY-----RA-----------PSE-- 202 (389)
T ss_pred HHHHHHhCcCCcceeeeeeCCccHHHHHHHHHHHHHHHhCCCCEEEEEEEehhhhhc-----cC-----------ccc--
Confidence 778899999762 688999999999999999999999999999999999732210 00 000
Q ss_pred CCCCCCCCcceecceeeeEEeCCh
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEEL 301 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~ 301 (349)
...+..-...++||||+|+||+..
T Consensus 203 ~~~~~~~~~~LFGDGAaAvvl~~~ 226 (389)
T PLN03168 203 NHLDGLVGSALFGDGAGVYVVGSD 226 (389)
T ss_pred ccHHHHhccccccCccEEEEEecC
Confidence 001111235678999999999974
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=103.18 Aligned_cols=132 Identities=11% Similarity=0.102 Sum_probs=94.5
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHH
Q 018905 121 KDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMAS 200 (349)
Q Consensus 121 ~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 200 (349)
+......-...|+.+|+.+||+++|+++++|+ .++++++.+.. ++ ..+
T Consensus 94 r~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId-----~ii~~t~t~~~--------------------------~P-~~a 141 (393)
T PLN03172 94 RQDMVVVEVPKLGKEAAAKAIKEWGQPKSKIT-----HLVFCTTSGVD--------------------------MP-GAD 141 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEccCCCc--------------------------Cc-hHH
Confidence 33444455678999999999999999998887 77788764311 11 356
Q ss_pred HHHHHHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 201 GHVSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 201 ~~ia~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.+|...||++.- .+.+..+|++++.+|..|..++++|..+.+||+++|.+...+. . ++..
T Consensus 142 ~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~~~----------~------~~d~- 204 (393)
T PLN03172 142 YQLTKLLGLKPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITAVTFR----------G------PSDT- 204 (393)
T ss_pred HHHHHHhCCCCCceEEeeeCCchHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhhhc----------c------cccc-
Confidence 788999999763 3567899999999999999999999999999999997321110 0 0000
Q ss_pred CCCCCCCCcceecceeeeEEeCChH
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~ 302 (349)
-.+.--...++||||+|+||+..+
T Consensus 205 -~~~~~v~~~LFGDGAaAvVl~~~~ 228 (393)
T PLN03172 205 -HLDSLVGQALFGDGAAAVIIGADP 228 (393)
T ss_pred -cHHhhhccchhcCceEEEEEecCC
Confidence 000001245689999999998743
|
|
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=102.20 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=93.6
Q ss_pred hhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHH
Q 018905 123 HRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGH 202 (349)
Q Consensus 123 ~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 202 (349)
.........|+++|+++||+++|+++++|+ .|+++++.+.. ++ ..+.+
T Consensus 102 ~~~~~~a~~la~~Aa~~aL~~ag~~~~dId-----~li~~t~t~~~--------------------------~P-~~a~~ 149 (399)
T PLN03171 102 DIAADAVPELAAEAAKKAIAEWGRPAADIT-----HLVVTTNSGAH--------------------------IP-GVDFR 149 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC--------------------------CC-chHHH
Confidence 334456777999999999999999999887 78888765321 11 34557
Q ss_pred HHHHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCC
Q 018905 203 VSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRP 279 (349)
Q Consensus 203 ia~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p 279 (349)
+...||++.- .+.+.++|++++.+|..|..+|++|..+.|||+++|.....+.. + ... .
T Consensus 150 v~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~li~~~~~~~vLVv~~e~~s~~~~~----------------~-d~~-~ 211 (399)
T PLN03171 150 LVPLLGLRPSVRRTMLHLNGCFAGAAALRLAKDLAENNRGARVLVVAAEITLLLFNG----------------P-DEG-C 211 (399)
T ss_pred HHHHhCCCcccceeeccCCccHHHHHHHHHHHHHHHhCCCCeEEEEEEeccccccCC----------------C-Ccc-c
Confidence 8888999653 45666799999999999999999999999999999972211100 0 000 0
Q ss_pred CCCCCCcceecceeeeEEeCChH
Q 018905 280 FDCGRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 280 f~~~~~G~~~gEGAaalvL~~~~ 302 (349)
++..-.+.++||||+|+||++.+
T Consensus 212 ~~~~v~~~LFGDGAaA~vl~~~~ 234 (399)
T PLN03171 212 FQTLLNQGLFGDGAAAVIVGADA 234 (399)
T ss_pred HHhhhccccccCccEEEEEecCC
Confidence 11111256899999999999754
|
|
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-10 Score=103.31 Aligned_cols=92 Identities=28% Similarity=0.316 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+++.++|+++++++++++ .|++|+..+... ...++.+++...|
T Consensus 26 ~~~L~~~a~~~al~~~~i~~~~Id-----~v~~G~~~~~~~--------------------------g~~~ar~~~l~aG 74 (264)
T PF00108_consen 26 PEDLAAEAVKAALERAGIDPEDID-----AVIVGNVLQEGE--------------------------GQNIARQAALAAG 74 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHGGGEE-----EEEEE-SSSCTT--------------------------TCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccchhhhh-----hcCccccccccc--------------------------chhhhhhhhhhcc
Confidence 678999999999999999998887 899999654321 1235566666777
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
+. -|.++|+++|+||+.||.+|+..|++|..|++||||+|++.
T Consensus 75 l~~~vp~~~V~~~CaSG~~Av~~a~~~I~sG~~dvvlagGvE~mS 119 (264)
T PF00108_consen 75 LPESVPATTVNRACASGLQAVHLAAMAIASGEADVVLAGGVESMS 119 (264)
T ss_dssp S-TTSEEEEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEETT
T ss_pred cccccceeeehhhhhHHHHHHHHhhhhhcCCCccEEEEecccccc
Confidence 73 49999999999999999999999999999999999999864
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=104.50 Aligned_cols=132 Identities=13% Similarity=0.125 Sum_probs=95.0
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHH
Q 018905 121 KDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMAS 200 (349)
Q Consensus 121 ~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 200 (349)
+......-...|+++|+++||+++|+++++|+ .+++.++.+.. + -.++
T Consensus 98 r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId-----~lI~~T~Tg~~--------------------------~-Ps~a 145 (401)
T PLN03170 98 RQDIVVVEVPKLGKAAAQKAIKEWGQPKSKIT-----HLVFCTTSGVD--------------------------M-PGAD 145 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEccCCCC--------------------------C-ChHH
Confidence 33344445567999999999999999998887 77787764311 1 1356
Q ss_pred HHHHHHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 201 GHVSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 201 ~~ia~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.+|...||++.- .+.+..+|++++.+|..|.+++++|..+.|||+++|.+...+ . . ++. .
T Consensus 146 ~~l~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A~~l~~~~~~~~vLVV~~E~~S~~~-----~-----~------~~~-~ 208 (401)
T PLN03170 146 YQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTF-----R-----G------PSE-S 208 (401)
T ss_pred HHHHHHhCcCcccHHHHhhcChhHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhcc-----C-----C------ccc-c
Confidence 788999999763 578999999999999999999999999999999999732111 0 0 000 0
Q ss_pred CCCCCCCCcceecceeeeEEeCChH
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~ 302 (349)
+ .+..-...++||||+|+||+..+
T Consensus 209 ~-~~~~~~~~LFGDGAaAvVl~~~~ 232 (401)
T PLN03170 209 H-LDSMVGQALFGDGAAAVIVGADP 232 (401)
T ss_pred h-hhhhhhhhhhhceeEEEEEecCC
Confidence 0 01111235789999999998743
|
|
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.2e-09 Score=94.62 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||++||+++++|+ .+++|+..+. .+++..++..||
T Consensus 54 E~~L~~EA~~~AL~kAGI~~~DID-----~i~vGdL~nQ-----------------------------~ipssfvar~LG 99 (334)
T PRK12404 54 ERKLLEEACSRAIEKAKLRKEDIQ-----FFLAGDLMNQ-----------------------------ITPTSFAARTLG 99 (334)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCC-----------------------------cCcHHHHHHHhC
Confidence 456999999999999999999998 8888874311 123346777787
Q ss_pred CCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcce
Q 018905 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (349)
Q Consensus 209 l~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~~ 288 (349)
+ |.+-|.++|+++..||.+|..+|++|.+|.|||+.+..+.+... .| +. ....+.-||.... -
T Consensus 100 I--P~~gV~gACSTg~eAL~lAa~~VaSG~Ad~VLavtsSH~~~aEr--qf---R~------P~eyG~Qrp~taq----w 162 (334)
T PRK12404 100 I--PYLGLFGACSTSMEGLALAALIVNSGGAKYVLTGASSHNAAVEK--QF---RY------PTEYGGQKPPTAQ----W 162 (334)
T ss_pred C--CccceeecCHHHHHHHHHHHHHHHcCCCCEEEEEeCcccchhhh--hc---cC------cccccCcCCCccc----E
Confidence 5 78999999999999999999999999999999998775333221 11 00 1122344444322 1
Q ss_pred ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHH
Q 018905 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 346 (349)
Q Consensus 289 ~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~ 346 (349)
.--||+++||.+. |..|+.+=.-.|-.-| +.+.+|...|.+++.|...-+.
T Consensus 163 TvTgaga~~l~~~------~~~~~i~~~T~Gkv~D-~g~~d~~nMGaaMAPAA~dti~ 213 (334)
T PRK12404 163 TVTGAGAAILSKT------GDGPRVTSATIGRVVD-MGLTDPFNMGGAMAPAAVDTIE 213 (334)
T ss_pred EEEceEEEEEecC------CCCceEEEEEEEEEEe-cCCCCcccchhhhhHHHHHHHH
Confidence 2347888888763 3344322111222222 4556777777766666655443
|
|
| >KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-10 Score=101.15 Aligned_cols=180 Identities=23% Similarity=0.365 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHH-HHcC
Q 018905 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS-MKYG 208 (349)
Q Consensus 130 ~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia-~~lg 208 (349)
-.|+..+....+++.++++..+. -+++|+....... ....+++ .+-|
T Consensus 62 DeLl~~vl~a~ie~t~~dp~~ig-----di~vG~vL~pg~g---------------------------a~e~R~a~~~ag 109 (435)
T KOG1389|consen 62 DELLAAVLRAVIEKTNLDPSLIG-----DIVVGTVLAPGSG---------------------------ASECRMAAFYAG 109 (435)
T ss_pred HHHHHHHHHHHHhhcCCCHHHhc-----ceeeeeccCCCcc---------------------------hHHHHHHHHHcC
Confidence 34555666777899999887765 5778876543221 1222332 2334
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH--HHH--------HH-------Hhccccccc-
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL--SMA--------GF-------CKSRALTTK- 268 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~--~~~--------~~-------~~~~~l~~~- 268 (349)
+ +-|..+|+..|+||++|+..-+..|+.|.+|+-|.+|+|+|.+.+ .+. -| .-||..++-
T Consensus 110 ~P~tvpv~tvNRqCsSGLqaVadiA~~Ir~G~ydIGla~GvESMt~~~~~g~~g~~~~~~~~~~~A~dCllpmGitsEnv 189 (435)
T KOG1389|consen 110 FPETVPVRTVNRQCSSGLQAVADIAAKIRAGFYDIGLAAGVESMTTNYPRGWPGSINPRLQKFEKARDCLLPMGITSENV 189 (435)
T ss_pred CCcccchhhhhhhhhhHHHHHHHHHHHHhcCceeeecccchhhhcccCCCCCccccChhhhhhhHHhhcccccccchHHH
Confidence 4 459999999999999999999999999999999999999965432 110 00 011111110
Q ss_pred ---cC-------------------------------------CCC-----------CCCCCC-------------CCCCC
Q 018905 269 ---YN-------------------------------------GTP-----------QEASRP-------------FDCGR 284 (349)
Q Consensus 269 ---~~-------------------------------------~~~-----------~~~~~p-------------f~~~~ 284 (349)
+. .++ ++..|| |-+|
T Consensus 190 a~rfgvsR~eqD~~Av~S~kkAa~A~~~G~f~dEIiPv~tkv~D~~g~~k~i~v~~DeGiRp~ttl~~l~klkpvFkkd- 268 (435)
T KOG1389|consen 190 AERFGVSREEQDEAAVDSHKKAAAATAKGKFKDEIIPVKTKVVDPKGDEKPITVSVDEGIRPNTTLESLAKLKPVFKKD- 268 (435)
T ss_pred HHHhCCChhhhhHHHHHHHHHHHHHhhcCcchhheeeeeeeccCCcCCccceeEecCCCCCCCcchhHHhhcchhhhcC-
Confidence 00 011 122222 3333
Q ss_pred Ccce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 285 DGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 285 ~G~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|.. ++|||++++|++...|.+.|.+++++.+.+....- .|...|.+++.||.++|+.|
T Consensus 269 -GttTagNsSQvSDGa~aVLLmkRs~A~qlgLPvlgvfr~f~~vGv-----~P~iMGiGPavAIp~alk~a 333 (435)
T KOG1389|consen 269 -GTTTAGNSSQVSDGAGAVLLMKRSVAMQLGLPVLGVFRDFAAVGV-----PPAIMGIGPAVAIPKALKAA 333 (435)
T ss_pred -CccccCchhhcccchhhhhhhhhhhHhhcCCceeEEeeeeeeecC-----CHHHcCCCchhhhHHHHHHc
Confidence 332 79999999999999999999999999999877664 67777888899999999865
|
|
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=101.83 Aligned_cols=128 Identities=12% Similarity=0.109 Sum_probs=92.5
Q ss_pred hccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHH
Q 018905 124 RSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHV 203 (349)
Q Consensus 124 ~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 203 (349)
....-...|+.+|+.+||+++|+++++|+ .+++.++.+.. + ...+.+|
T Consensus 97 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId-----~li~~t~t~~~--------------------------~-P~~a~~l 144 (391)
T PLN03173 97 MVVVEVPKLGKEAAAKAIKEWGQPKSKIT-----HLVFCTTSGVD--------------------------M-PGADYQL 144 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEccCCCc--------------------------c-cHHHHHH
Confidence 34445567999999999999999998887 78888764311 1 1356778
Q ss_pred HHHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCC
Q 018905 204 SMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPF 280 (349)
Q Consensus 204 a~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf 280 (349)
...||++.- .+.+..+|+++..+|..|.++++++..+.|||+++|.+...+. . ++.. -.
T Consensus 145 ~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~~~----------~------~~d~--~~ 206 (391)
T PLN03173 145 TKLLGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFR----------G------PSDT--HL 206 (391)
T ss_pred HHHhCCCccceeeehhcCccHHHHHHHHHHHHHHHhCCCCeEEEEEEehhhhhhC----------C------cccc--ch
Confidence 899999763 4567999999999999999999999999999999997321110 0 0000 00
Q ss_pred CCCCCcceecceeeeEEeCCh
Q 018905 281 DCGRDGFVIGEGSGVLVLEEL 301 (349)
Q Consensus 281 ~~~~~G~~~gEGAaalvL~~~ 301 (349)
+..-...++||||+|+||+..
T Consensus 207 ~~~v~~~LFGDGAaAvvl~~~ 227 (391)
T PLN03173 207 DSLVGQALFGDGAAAIIIGSD 227 (391)
T ss_pred hhhhhhhhhcCceEEEEEeCC
Confidence 000124668999999999864
|
|
| >KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-10 Score=100.44 Aligned_cols=160 Identities=24% Similarity=0.321 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcCCCC
Q 018905 132 YALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQG 211 (349)
Q Consensus 132 l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~G 211 (349)
++-+|+..||+|+++...+++ ..-+|-++|.+.-+. +.-+-+|++|
T Consensus 32 ~a~ea~tkal~da~ikys~vq-qa~vgyvfgdstcgq---------------------------------raiyevgmtg 77 (408)
T KOG1406|consen 32 FAKEAITKALQDAGIKYSEVQ-QAVVGYVFGDSTCGQ---------------------------------RAIYEVGMTG 77 (408)
T ss_pred HHHHHHHHHHHhcCCCHHHHH-hhhheeeecCCccch---------------------------------HHHHhccccC
Confidence 677899999999999877664 556677777644332 2223478889
Q ss_pred -CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHH-------------------------------
Q 018905 212 -PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGF------------------------------- 259 (349)
Q Consensus 212 -p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~------------------------------- 259 (349)
|.+.|++.|+++..||.+|.+.|++|..|.+|+.|.|.+. +-++...
T Consensus 78 ipi~nvnnncatgssalflakqiiesgn~dcvlalgfekm~-~gsl~~k~~dra~p~dkhi~~m~e~ygl~a~pmaaqmf 156 (408)
T KOG1406|consen 78 IPIYNVNNNCATGSSALFLAKQIIESGNSDCVLALGFEKME-RGSLSNKAADRALPVDKHISVMSETYGLEAAPMAAQMF 156 (408)
T ss_pred cceeeccCccccCchHHHHHHHHHhcCCcceEEeechhhhC-CcccchhhhhccCcchhhHHHHHhhccCCCCcchHHHh
Confidence 9999999999999999999999999999999999999842 2111110
Q ss_pred -----Hhccccccc--------cCCCCCCCCCCCCCCCCcce---------------------ecceeeeEEeCChHHHH
Q 018905 260 -----CKSRALTTK--------YNGTPQEASRPFDCGRDGFV---------------------IGEGSGVLVLEELEHAK 305 (349)
Q Consensus 260 -----~~~~~l~~~--------~~~~~~~~~~pf~~~~~G~~---------------------~gEGAaalvL~~~~~A~ 305 (349)
.+|....++ +.++......||++.++-+. .+||+++.||.++.-.+
T Consensus 157 gnagkehmekygtk~ehfakiawknhkhsvnnpysqf~deysldqvm~s~~v~dflt~lqccptsdgaaaailaseafv~ 236 (408)
T KOG1406|consen 157 GNAGKEHMEKYGTKPEHFAKIAWKNHKHSVNNPYSQFRDEYSLDQVMKSPQVVDFLTKLQCCPTSDGAAAAILASEAFVR 236 (408)
T ss_pred hhhHHHHHHHhCCCHHHHhHhhhhccccccCChhHhhhhhccHHHHhcchHHHHHHHHhhcCCCCCchHHHHHhHHHHHH
Confidence 111110000 01233445567766655444 69999999999999888
Q ss_pred hcCCeEeE-EEEeEEeeCCCCC
Q 018905 306 KRGAKIYA-EVRGYGMSGDAHH 326 (349)
Q Consensus 306 ~~g~~~~a-~i~g~~~~~d~~~ 326 (349)
+.|..-.| +|.|..+.+|..+
T Consensus 237 k~gl~~qaveivg~em~td~ps 258 (408)
T KOG1406|consen 237 KHGLEKQAVEIVGMEMATDPPS 258 (408)
T ss_pred hcccHHHHHHHHHHHhccCCch
Confidence 88765443 6888888888543
|
|
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-08 Score=95.85 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHH---H
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS---M 205 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia---~ 205 (349)
...|++.|++.||+++|+++++|+ -|++||..+... ....+..|. .
T Consensus 53 ~~tmA~~AA~~aL~~agid~~~Id-----llivaTeT~~d~--------------------------~ps~A~~v~~ll~ 101 (459)
T PLN02577 53 VISMSLTVVKSLLEKYNIDPKQIG-----RLEVGSETVIDK--------------------------SKSIKTFLMQLFE 101 (459)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCCC--------------------------CCchHHHHHHHHH
Confidence 567999999999999999998887 889998654311 012233333 4
Q ss_pred HcCCCC-CeeecccchhhHHHHHHHHHHHHHcCCC--CEEEEeecCC
Q 018905 206 KYGFQG-PNHAAVTACATGAHSIGDAARMIQFGDS--DVMVAGGTES 249 (349)
Q Consensus 206 ~lgl~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~--d~~lvgg~d~ 249 (349)
.+|... .++-+..+|.++..||..|..+|++|.. +.+||+|+|.
T Consensus 102 ~LG~~~~~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~ 148 (459)
T PLN02577 102 ESGNTDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADS 148 (459)
T ss_pred HhCCCCcEEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEech
Confidence 456654 7888999999999999999999999985 8999999996
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.1e-09 Score=102.24 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=94.8
Q ss_pred hccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHH
Q 018905 124 RSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHV 203 (349)
Q Consensus 124 ~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 203 (349)
........++..|+.+||+++|+++++|+ .+++.++.+.. ...++..|
T Consensus 143 ~~~~ea~~la~~Aa~~aL~~agi~p~dId-----~lIv~tst~~~---------------------------~Pslaa~V 190 (478)
T PLN02932 143 VSRKETEEVIIGAVDNLFRNTGISPSDIG-----ILVVNSSTFNP---------------------------TPSLSSIL 190 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEccCCCC---------------------------CCcHHHHH
Confidence 34455777999999999999999999887 77787765321 12456778
Q ss_pred HHHcCCC-C-Ceeecc-cchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCC
Q 018905 204 SMKYGFQ-G-PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPF 280 (349)
Q Consensus 204 a~~lgl~-G-p~~~v~-~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf 280 (349)
...+|++ . .++.++ .||++++.+|..|.++|+.|....+||+++|.+...+.. +..+
T Consensus 191 ~~~lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll~~~~~~~aLVVstE~~S~~~~~------------------~d~r-- 250 (478)
T PLN02932 191 VNKFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTENITQNLYL------------------GNNK-- 250 (478)
T ss_pred HHHhCCCCCceEEEeccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEeecccccCC------------------Ccch--
Confidence 8999996 3 789998 799999999999999999999999999999973221110 0000
Q ss_pred CCCCCcceecceeeeEEeCChH
Q 018905 281 DCGRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 281 ~~~~~G~~~gEGAaalvL~~~~ 302 (349)
+..-....+||||+|+||+..+
T Consensus 251 ~~l~t~~LFgDGAAAvlLs~~~ 272 (478)
T PLN02932 251 SMLVTNCLFRIGGAAILLSNRS 272 (478)
T ss_pred hhhccceeecccceEEEEeccc
Confidence 0001245689999999999744
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=97.84 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=91.4
Q ss_pred hccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHH
Q 018905 124 RSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHV 203 (349)
Q Consensus 124 ~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 203 (349)
........++..|+.+||+++|+++++|+ .+++ ++.+.. ....++..|
T Consensus 167 ~~~~ea~~l~~~A~~~aL~kaGi~p~dID-----~LVv-~cS~~~--------------------------~~PSlaa~V 214 (502)
T PLN02377 167 AAREEAEQVMFGALDNLFANTNVNPKDIG-----ILVV-NCSLFN--------------------------PTPSLSAMI 214 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEE-ECCCCC--------------------------CCCcHHHHH
Confidence 34455778999999999999999998886 5665 443321 012456778
Q ss_pred HHHcCCCC--Ceeecc-cchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCC
Q 018905 204 SMKYGFQG--PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPF 280 (349)
Q Consensus 204 a~~lgl~G--p~~~v~-~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf 280 (349)
...||++. .++.++ .||++++.+|..|.++|+.|....+||+++|.....+. +
T Consensus 215 ~~~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~~~~~~aLVVstE~~S~~~~------------------------~ 270 (502)
T PLN02377 215 VNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWY------------------------F 270 (502)
T ss_pred HHHhCCCCCCeEEecccchhhHHHHHHHHHHHHHHcCCCCEEEEEEEeccccccC------------------------C
Confidence 88999974 789999 59999999999999999999999999999997221110 0
Q ss_pred CCCCC----cceecceeeeEEeCCh
Q 018905 281 DCGRD----GFVIGEGSGVLVLEEL 301 (349)
Q Consensus 281 ~~~~~----G~~~gEGAaalvL~~~ 301 (349)
+.++. ...+||||+|+||++.
T Consensus 271 ~d~~s~lv~n~LFgDGAaAvlLs~~ 295 (502)
T PLN02377 271 GNKKSMLIPNCLFRVGGSAVLLSNK 295 (502)
T ss_pred CCCccccccceeeccccEEEEEecc
Confidence 11111 3567999999999873
|
|
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=96.12 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
.....+...|+.+||+++|+++++|+ -+++.++ ... ....++..|...
T Consensus 174 ~Ea~~~~~~Aa~~aL~kaGi~p~DID-----iLIv~~S-~~~--------------------------~~PSlaa~I~n~ 221 (511)
T PLN02192 174 KEAETVMFGAIDQLLAKTSVKPKDIG-----ILIVNCS-LFN--------------------------PTPSLSAMVINH 221 (511)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECC-CCC--------------------------CCchHHHHHHHH
Confidence 45677999999999999999998887 6666643 211 012456778888
Q ss_pred cCCCC--Ceeecc-cchhhHHHHHHHHHHHHHcCCCCEEEEeecCCC
Q 018905 207 YGFQG--PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESS 250 (349)
Q Consensus 207 lgl~G--p~~~v~-~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~ 250 (349)
+|++. .++.++ .||++++.||..|.++|+.+....+||+++|.+
T Consensus 222 lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a~~~~~aLVVstE~~ 268 (511)
T PLN02192 222 YKLRGNILSYNLGGMGCSAGLISIDLAKHLLQVHPNSYALVISMENI 268 (511)
T ss_pred hCCCCCceEEEcccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEEec
Confidence 99974 799999 599999999999999999999999999999973
|
|
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.5e-08 Score=92.05 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|++.|+.+||+++ ++++|+ .+++++..+... .-..+..|...||
T Consensus 49 ~~~la~~Aa~~aL~~a--~~~~Id-----~li~~t~s~~~~--------------------------~~s~a~~v~~~Lg 95 (379)
T TIGR01835 49 IVTMAASAAKPILDRN--DKQKID-----MVIFGTESGIDQ--------------------------SKAAAVYVHGLLG 95 (379)
T ss_pred HHHHHHHHHHHHHHhC--CHhhCC-----EEEEEeCCCCCC--------------------------CCCHHHHHHHHhC
Confidence 4679999999999998 677776 788888654321 1135667888899
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCC
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTES 249 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~ 249 (349)
+.+ +.+.+.++|+++..||..|..+|++|..+.+||+++|.
T Consensus 96 l~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~~~aLVv~~D~ 138 (379)
T TIGR01835 96 LQPFCRSFELKQACYGATAALQMAKGHVALSPDRKVLVIASDI 138 (379)
T ss_pred CCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCeEEEEEeeh
Confidence 964 78899999999999999999999999999999999986
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=92.35 Aligned_cols=121 Identities=18% Similarity=0.165 Sum_probs=89.4
Q ss_pred ccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHH
Q 018905 125 SIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (349)
Q Consensus 125 ~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (349)
...........++.++|+++|+++++|+ .+++.+ .+.. ....++..|.
T Consensus 184 ~r~ea~~v~~~~~~~lL~kaGi~p~dID-----~LIv~c-S~~~--------------------------p~PSlAa~I~ 231 (521)
T PLN02854 184 ARAEAEAVMFGALDSLFSKTGVKPRDIG-----ILIVNC-SLFN--------------------------PTPSLSAMIV 231 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEC-CCCC--------------------------CCCCHHHHHH
Confidence 3345666788889999999999998887 666643 2211 0124567788
Q ss_pred HHcCCC-C-Ceeecc-cchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCC
Q 018905 205 MKYGFQ-G-PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281 (349)
Q Consensus 205 ~~lgl~-G-p~~~v~-~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~ 281 (349)
..+|++ . .++.++ .||++++.+|..|.++|+.|....+||+++|.+. ..+ . ++
T Consensus 232 n~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~~~aLVVstE~~S--~~~--------y--------------~g 287 (521)
T PLN02854 232 NHYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKANPNSYAVVVSTENIT--LNW--------Y--------------FG 287 (521)
T ss_pred HHhCCCCCceEEecccchhhhHHHHHHHHHHHHHhCCCCeEEEEEEeeee--cCC--------C--------------CC
Confidence 899997 4 688898 7999999999999999999999999999999832 110 0 01
Q ss_pred CCCC----cceecceeeeEEeCCh
Q 018905 282 CGRD----GFVIGEGSGVLVLEEL 301 (349)
Q Consensus 282 ~~~~----G~~~gEGAaalvL~~~ 301 (349)
.+++ ...+||||+|+||++.
T Consensus 288 ~Drs~lv~~~LFgDGAAAvlLs~~ 311 (521)
T PLN02854 288 NDRSMLLCNCIFRMGGAAVLLSNK 311 (521)
T ss_pred CchhhhcceeeeccceeEEEEecc
Confidence 1111 3568999999999874
|
|
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=98.73 E-value=6e-07 Score=86.95 Aligned_cols=90 Identities=10% Similarity=0.064 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc-
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY- 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l- 207 (349)
...|++.|+..+|+++++.+++|+ -|++||..+... ....+..|...|
T Consensus 50 ~~tma~~AA~~lL~~a~id~~~Id-----~Liv~TeS~~d~--------------------------sps~a~~v~~lL~ 98 (454)
T TIGR01833 50 INSLCLTVVSKLMERYNIDYNQIG-----RLEVGTETIIDK--------------------------SKSVKTVLMQLFE 98 (454)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECCCCCCC--------------------------CCchHHHHHHHHH
Confidence 577999999999999999988887 788988654321 012334455544
Q ss_pred --CCCC-CeeecccchhhHHHHHHHHHHHHHcCCC--CEEEEeecCC
Q 018905 208 --GFQG-PNHAAVTACATGAHSIGDAARMIQFGDS--DVMVAGGTES 249 (349)
Q Consensus 208 --gl~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~--d~~lvgg~d~ 249 (349)
|+.. .++-+..+|+++..||..|..+|++|.. +.+||+++|.
T Consensus 99 ~lG~~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDi 145 (454)
T TIGR01833 99 ESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDI 145 (454)
T ss_pred hcCCCCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEecc
Confidence 4433 6778999999999999999999999974 8999999997
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.4e-07 Score=83.79 Aligned_cols=133 Identities=23% Similarity=0.282 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..-|+++|++++|+++++++.+|. .|++||.++.... =..+..|+..||
T Consensus 51 ~vTmaveAA~~~l~r~~~D~~~Ig-----~v~vgTES~~d~~--------------------------K~~at~v~~~lg 99 (377)
T COG3425 51 AVTMAVEAARNALKRADIDPSKIG-----AVIVGSESGPDAV--------------------------KPTATIVAEALG 99 (377)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCc-----eEEEecCCCcccc--------------------------cchHHHHHHHhC
Confidence 566999999999999999887776 7999996654321 134567888999
Q ss_pred CCCCeee--cccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 209 FQGPNHA--AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 209 l~Gp~~~--v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
+.--..+ +..+|-++..||.+|..+|.+|..+.+||+|.|..... .. .. --
T Consensus 100 ~~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~~-----------~~--------~~--------~E 152 (377)
T COG3425 100 LNPSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQYA-----------PG--------DA--------LE 152 (377)
T ss_pred CCCceehhhHHHHHHHHHHHHHHHHHHHHcCCccceEEEeehhhccC-----------CC--------cc--------cC
Confidence 9664444 66899999999999999999999999999999961110 00 01 11
Q ss_pred ceecceeeeEEeCChHHHHhcCCeEeEEEEeEEe-eCCCCC
Q 018905 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM-SGDAHH 326 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~-~~d~~~ 326 (349)
..-|.||+|+|++.. ..+.+.+.+.+. ..|-..
T Consensus 153 ~t~GAGavA~lIg~n-------~~~~a~~~~~~syt~d~~D 186 (377)
T COG3425 153 YTAGAGAVAFLIGKN-------PPIVAEFEGTGSYTTDTPD 186 (377)
T ss_pred ccCCCceEEEEEccC-------CCeEEEecCceEEecCCCc
Confidence 346899999999862 344556656655 344443
|
|
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-07 Score=82.95 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=90.6
Q ss_pred ccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHH
Q 018905 125 SIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (349)
Q Consensus 125 ~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (349)
..+....++..++.++|+.+|+.+++|+ .+++.++.+.. . ..++..|.
T Consensus 79 a~~Eae~v~f~av~~LL~ktgv~p~dId-----iLVvncs~f~p------------------t---------PSLsamIv 126 (290)
T PF08392_consen 79 AREEAEMVIFGAVDDLLAKTGVKPSDID-----ILVVNCSLFNP------------------T---------PSLSAMIV 126 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEECcCCCc------------------C---------CcHHHHHH
Confidence 3355666888999999999999999887 67776654321 1 14566788
Q ss_pred HHcCCCC--Ceeecc-cchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCC
Q 018905 205 MKYGFQG--PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281 (349)
Q Consensus 205 ~~lgl~G--p~~~v~-~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~ 281 (349)
..||++. -++.+. .||++|+.+|.+|.++++...-..+||+.+|.....+. .+-.....++
T Consensus 127 nr~~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~p~~~ALVVstE~~s~~~Y-~G~~rsmlv~--------------- 190 (290)
T PF08392_consen 127 NRYGMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAHPNSYALVVSTENISANWY-RGNDRSMLVS--------------- 190 (290)
T ss_pred HHhCCCcCeeeecccCCcchhhHHHHHHHHHHHHhCCCcEEEEEEEeecccccc-cCCcHHHhhc---------------
Confidence 8899987 444444 49999999999999999999989999999998433221 1111111111
Q ss_pred CCCCcceecceeeeEEeCChHH
Q 018905 282 CGRDGFVIGEGSGVLVLEELEH 303 (349)
Q Consensus 282 ~~~~G~~~gEGAaalvL~~~~~ 303 (349)
-..+.+|++|++|.+...
T Consensus 191 ----NcLFr~GgAAvLLSn~~~ 208 (290)
T PF08392_consen 191 ----NCLFRMGGAAVLLSNKPS 208 (290)
T ss_pred ----cccccCCceeEEeecCcc
Confidence 235789999999998655
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=84.35 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=83.2
Q ss_pred HHHHHHHH-HHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 128 RFIAYALC-AADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 128 ~~~~l~~~-a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
....|++. |+.+||+++|+++++|+ .+++. +.+... ....+..|...
T Consensus 132 ~e~em~i~~A~~~aL~~aGi~p~dID-----~LIvs-~T~~~~--------------------------~Pslaa~l~~~ 179 (466)
T PLN00415 132 HESELVIFGALNSLFKKTGIEPREVG-----IFIVN-CSLFNP--------------------------NPSLSSMIVNR 179 (466)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEE-CcCCCC--------------------------CchHHHHHHHH
Confidence 34455555 66678899999998886 55543 322110 11345668888
Q ss_pred cCCC-C-Ceeeccc-chhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCC
Q 018905 207 YGFQ-G-PNHAAVT-ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (349)
Q Consensus 207 lgl~-G-p~~~v~~-acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~ 283 (349)
+|++ . ..+.|.+ ||+++..+|..|.++++++....+||+++|.+...+. ........+
T Consensus 180 LGLr~~v~~~dL~gmGCsggv~aL~lA~~ll~a~~~~~aLVVs~E~~S~~~~-~~~dr~~lv------------------ 240 (466)
T PLN00415 180 YKLKTDVKTYNLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTENMTLSMY-RGNDRSMLV------------------ 240 (466)
T ss_pred hCCCCCceEEEeccccchHHHHHHHHHHHHHHhCCCCEEEEEEEeccccccc-CCCcHhHhc------------------
Confidence 8996 2 6788987 9999999999999999999999999999997321110 000000000
Q ss_pred CCcceecceeeeEEeCChH
Q 018905 284 RDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 284 ~~G~~~gEGAaalvL~~~~ 302 (349)
.-.++||||+|+||++..
T Consensus 241 -~n~LFgDGAAAvlLs~~~ 258 (466)
T PLN00415 241 -PNCLFRVGGAAVMLSNRS 258 (466)
T ss_pred -cceeecccceEEEEecCc
Confidence 024579999999999753
|
|
| >KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.4e-07 Score=81.02 Aligned_cols=92 Identities=24% Similarity=0.321 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcCC
Q 018905 130 IAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGF 209 (349)
Q Consensus 130 ~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl 209 (349)
+.|+.++....|+...++.+.++ -+++|+..... -.+.++...+..-|+
T Consensus 67 hdlar~al~~ll~kt~lpke~~d-----yii~gtviqev--------------------------ktsniareaal~agf 115 (465)
T KOG1392|consen 67 HDLAREALKALLEKTKLPKEQLD-----YIICGTVIQEV--------------------------KTSNIAREAALLAGF 115 (465)
T ss_pred hHHHHHHHHHHHHhccCCHHHhc-----eeeehhhHHHH--------------------------hcchHHHHHHHhcCC
Confidence 56777888888898888877776 78888743211 112344555555666
Q ss_pred --CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC
Q 018905 210 --QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 252 (349)
Q Consensus 210 --~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~ 252 (349)
+.|..||.-+|-|+..|+..++-+|..|.+|+++.||+|.+.+
T Consensus 116 sdktpahtvtmacissn~amttgmgliatg~~dvivaggvelmsd 160 (465)
T KOG1392|consen 116 SDKTPAHTVTMACISSNVAMTTGMGLIATGNADVIVAGGVELMSD 160 (465)
T ss_pred CCCCccceeeeehhccchhhhccceeEeeCCcCEEEEcceeeccc
Confidence 4599999999999999999999999999999999999998654
|
|
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.6e-07 Score=85.39 Aligned_cols=57 Identities=33% Similarity=0.523 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH
Q 018905 198 MASGHVSMKYGFQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL 254 (349)
Q Consensus 198 ~~a~~ia~~lgl~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~ 254 (349)
.++..++...|+.. |.++|+.+|+||+.|+..|++.|++|.+|++|++|+|++....
T Consensus 68 ~~ar~~a~~aGl~~~~p~~~V~~~c~SG~~Av~~A~~~I~sG~~dvvlagG~E~mS~~~ 126 (392)
T COG0183 68 NIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAP 126 (392)
T ss_pred cHHHHHHHHcCCCCCCCceEEeccchhHHHHHHHHHHHHHCCCCCEEEEEeeeeccCCC
Confidence 45677888899986 9999999999999999999999999999999999999865543
|
|
| >PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.4e-07 Score=78.49 Aligned_cols=94 Identities=18% Similarity=0.110 Sum_probs=69.2
Q ss_pred ccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHH
Q 018905 125 SIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (349)
Q Consensus 125 ~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (349)
.......|+.+|+.+||+++|+++.+|. .+|+-++.|-.. ..+-.+|.
T Consensus 96 ~~~~a~~L~~~Aa~~AL~~~g~~~~dIt-----hlv~vs~TG~~~---------------------------PglD~~l~ 143 (226)
T PF00195_consen 96 YAEEAPPLAEEAARKALAEAGLDPSDIT-----HLVTVSCTGIAA---------------------------PGLDARLI 143 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-GGGEC-----EEEEEESSSSEC---------------------------S-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcccc-----eEEEEecCCcCC---------------------------CchhHHHH
Confidence 3445667999999999999999988877 888877665321 12334677
Q ss_pred HHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCC
Q 018905 205 MKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESS 250 (349)
Q Consensus 205 ~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~ 250 (349)
..|||+.. .....-||..|..+|..|.+..++..-..|||+.+|.+
T Consensus 144 ~~LgL~~~v~R~~i~~~GC~gg~~~L~~A~~~~~~~p~a~VLvv~vElc 192 (226)
T PF00195_consen 144 NRLGLRPDVQRTPIFGMGCAGGAAGLRRAKDIARANPGARVLVVCVELC 192 (226)
T ss_dssp HHHT--TTSEEEEEES-GGGHHHHHHHHHHHHHHHSTT-EEEEEEEEEG
T ss_pred hcCCCCCCcEEEEEeccchhhHHHHHHHHHHHHhCCccceEEEEEEEee
Confidence 88888653 33456799999999999999999998899999999974
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A .... |
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.3e-07 Score=66.33 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=46.5
Q ss_pred eecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcceeccee
Q 018905 214 HAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGS 293 (349)
Q Consensus 214 ~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~~~gEGA 293 (349)
+-|.++|++++.||+.|..+|++|.++.+||++.|........ ......+++||||
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~~~~~------------------------~~~~~~~~~gDgA 56 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRAKNALVVGGDRLSRIVDR------------------------TDRQTAFIFGDGA 56 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGGSHT------------------------THHHHHTTB-EEE
T ss_pred CcccccchHHHHHHHHHHHHHhhccCCEEEEEeeccccccccc------------------------cccCcceeecchh
Confidence 3477899999999999999999999999999999973221110 0011235789999
Q ss_pred eeEEeCCh
Q 018905 294 GVLVLEEL 301 (349)
Q Consensus 294 aalvL~~~ 301 (349)
+|+||++.
T Consensus 57 aA~vl~~~ 64 (80)
T PF08545_consen 57 AAVVLSRD 64 (80)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEec
Confidence 99999985
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.7e-05 Score=67.91 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=71.9
Q ss_pred ccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHH
Q 018905 125 SIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (349)
Q Consensus 125 ~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (349)
.+.....+.+++.++||+.+++.+++|+ .|++.++.|-.. ..+-.+|.
T Consensus 72 fie~a~~l~v~a~r~aL~~~~l~pedId-----~vv~vtsTG~~~---------------------------Ps~dari~ 119 (356)
T COG3424 72 FIEEAVPLGVDALRRALDGSPLRPEDID-----AVVTVTSTGLAT---------------------------PSLDARIV 119 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHCc-----EEEEEeeccccC---------------------------CChhHHHH
Confidence 4455677999999999999999999887 788777654321 12234566
Q ss_pred HHcCCCCCe--e-ecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCC
Q 018905 205 MKYGFQGPN--H-AAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESS 250 (349)
Q Consensus 205 ~~lgl~Gp~--~-~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~ 250 (349)
..|||.-.. + .-.-||+.+..+|..|.+.++..-...+||+++|.+
T Consensus 120 ~~Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~P~~~vlvV~vELC 168 (356)
T COG3424 120 GELGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAAPDANVLVVCVELC 168 (356)
T ss_pred hhcCCCCccceeeeecchhhhhhhHHHHHHHHHhhCccceEEEEEeeee
Confidence 677775422 2 234599999999999999999999999999999974
|
|
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.1e-05 Score=62.60 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..-|++.|+..+|++.++++++|. -+++||.++-.. .-..+.+|..+|+
T Consensus 53 ~vTmA~nAa~~ll~~~~id~~~Ig-----~l~vgTES~vD~--------------------------sKs~~t~v~~ll~ 101 (174)
T PF01154_consen 53 IVTMAANAAKPLLDRYNIDPDDIG-----RLIVGTESGVDK--------------------------SKSISTYVHQLLG 101 (174)
T ss_dssp HHHHHHHHHHTTHHHHT-HHHHEE-----EEEEE-SS-SBS--------------------------SS-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHcc-----EEEEeccccccc--------------------------cccHHHHHHHHhC
Confidence 567999999999999877655553 477888543210 0135567888999
Q ss_pred CCCC----eeecccchhhHHHHHHHHHHHHHcCCCC--EEEEeecCC
Q 018905 209 FQGP----NHAAVTACATGAHSIGDAARMIQFGDSD--VMVAGGTES 249 (349)
Q Consensus 209 l~Gp----~~~v~~acaS~~~Al~~A~~~I~~G~~d--~~lvgg~d~ 249 (349)
+.+. .+-+-.+|-+|..||..|..+|+++..| .+||+++|.
T Consensus 102 ~s~~~~~~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDi 148 (174)
T PF01154_consen 102 LSGNPDCRGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDI 148 (174)
T ss_dssp TTT-SSSEEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEE
T ss_pred cCCCCceeeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccc
Confidence 9653 2456789999999999999999998765 899999996
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=59.66 Aligned_cols=157 Identities=20% Similarity=0.149 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..+|..+|+..||+.+++++++|+ .+++...-+ ....++..+..|+
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~dId------~~~aGDLln----------------------------Q~i~s~f~ar~l~ 96 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGLKKEDID------YLFAGDLLN----------------------------QIISSSFAARDLG 96 (329)
T ss_dssp HHHHHHHHHHHHHHHTT--GGG-S------EEEEEETTC----------------------------CCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCe------EEEehhhhh----------------------------hhHHHHHHHHhcC
Confidence 456889999999999999988886 555542111 0123344555666
Q ss_pred CCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcce
Q 018905 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (349)
Q Consensus 209 l~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~~ 288 (349)
+ |-+=+-++|++...+|.+|..+|..|-+|.+|++.+..+.+...- |+ .-. ..+.-||-.. .-
T Consensus 97 i--Pf~GlygACST~~e~l~laa~~vdgg~a~~vla~tSSH~~tAERQ--fR---~P~------EyG~Qrp~tA----qw 159 (329)
T PF07451_consen 97 I--PFLGLYGACSTMMESLALAAMLVDGGFADYVLAATSSHFATAERQ--FR---FPT------EYGGQRPPTA----QW 159 (329)
T ss_dssp ----EEEB--CCCHHHHHHHHHHHHHHTTS-SEEEEEEEE-CCHHHHH--T------G------GGT----TT------E
T ss_pred C--CccchhhHHHHHHHHHHHHHHHHhCCCcceEEEEeccccchhhhh--cc---Cch------hccCCCCCcc----cE
Confidence 6 888899999999999999999999999999999987763322211 11 000 1122333221 12
Q ss_pred ecceeeeEEeCChHHHHhcCCeEeEEEEeEEe--eCCCCCCCCCCCCcHHHHHHHHHHH
Q 018905 289 IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGM--SGDAHHITQPHIDGKGAILAMTRAL 345 (349)
Q Consensus 289 ~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~--~~d~~~~~~p~~~g~~~~~a~~~Al 345 (349)
.--||+++||.+.. ..|+ |.+.-. .-| +.+.+|...|.+++.|+..-+
T Consensus 160 TVTGaGa~il~~~~------~~p~--It~~T~GkVvD-~G~~D~~nMGaAMAPAA~dTI 209 (329)
T PF07451_consen 160 TVTGAGAAILSKEG------SGPR--ITHATIGKVVD-MGIKDPNNMGAAMAPAAADTI 209 (329)
T ss_dssp E--EEEEEEEESS--------SEE--EEEEE----B--SS---TT-HHHHHHHHHHHHH
T ss_pred EEeceEEEEEecCC------CCcE--EEEEEEEEEEE-cCCCCcccchhhHhHHHHHHH
Confidence 34588999998643 2343 443322 222 456677777777666665544
|
This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A. |
| >KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.55 Score=44.02 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|.+.++...+++-.|++..|- -+-|||..-- +..+ .+=..+.++|+
T Consensus 60 i~Sl~ltvvs~Lmery~i~~~~IG-----RLEVGTETii--DKSK------------------------SVKt~LMqLF~ 108 (462)
T KOG1393|consen 60 IISLSLTVVSRLMERYNIDPDSIG-----RLEVGTETII--DKSK------------------------SVKTVLMQLFE 108 (462)
T ss_pred hhhhhHHHHHHHHHHhCCChhhcc-----eEEecceecc--ccch------------------------HHHHHHHHHhh
Confidence 455788899999999988876663 4667873210 0001 11122344444
Q ss_pred CCC----CeeecccchhhHHHHHHHHHHHHHcCCCC--EEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCC
Q 018905 209 FQG----PNHAAVTACATGAHSIGDAARMIQFGDSD--VMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (349)
Q Consensus 209 l~G----p~~~v~~acaS~~~Al~~A~~~I~~G~~d--~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~ 282 (349)
=.| -.+-..++|-+|..||..|..||++.--| .+||+..|.- +- +++.+||-.
T Consensus 109 ~sgNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIA--------------vY------~~G~aRpTG- 167 (462)
T KOG1393|consen 109 ESGNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIA--------------VY------AKGNARPTG- 167 (462)
T ss_pred hcCCCccccccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEE--------------Ee------cCCCCCCCC-
Confidence 222 23345579999999999999999977654 6677666641 11 336666643
Q ss_pred CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCC--CC-----CCCC--CCCCcHHHHHHHHHHHHHhC
Q 018905 283 GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGD--AH-----HITQ--PHIDGKGAILAMTRALKQAY 349 (349)
Q Consensus 283 ~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d--~~-----~~~~--p~~~g~~~~~a~~~Al~~A~ 349 (349)
|-||.|+++.+. + |+..-.|.-..+- .+ .+.+ |-.+|.--.++..+||+++|
T Consensus 168 -------GAgAVAmLIgPn-------A-pi~ferglr~thM~hayDFyKPdl~SEyPvVDGklSi~cYl~Ald~cY 228 (462)
T KOG1393|consen 168 -------GAGAVAMLIGPN-------A-PIIFERGLRATHMQHAYDFYKPDLLSEYPVVDGKLSIQCYLSALDRCY 228 (462)
T ss_pred -------CcceEEEEEcCC-------C-ceEecccchhhhhhhhhhccCCCCCCcCceecCeehHHHHHHHHHHHH
Confidence 678999999872 2 2333333322221 12 2222 33456555667777877765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 349 | ||||
| 1w0i_A | 431 | Arabidopsis Thaliana Mitochondrial Kas Length = 431 | 1e-125 | ||
| 3kzu_A | 428 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 8e-72 | ||
| 3e60_A | 424 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 9e-68 | ||
| 2iwy_A | 438 | Human Mitochondrial Beta-ketoacyl Acp Synthase Leng | 4e-65 | ||
| 2c9h_A | 444 | Structure Of Mitochondrial Beta-Ketoacyl Synthase L | 5e-64 | ||
| 1j3n_A | 408 | Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protei | 1e-61 | ||
| 4ddo_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 4e-54 | ||
| 4f32_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 6e-53 | ||
| 2gqd_A | 437 | The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii | 8e-51 | ||
| 2gfw_A | 427 | Structure Of Wild Type E. Coli Fabf (Kasii) Length | 1e-48 | ||
| 1b3n_A | 412 | Beta-Ketoacyl Carrier Protein Synthase As A Drug Ta | 1e-48 | ||
| 2gfy_A | 427 | Structure Of E. Coli Fabf(K335a) Mutant With Covale | 2e-48 | ||
| 1e5m_A | 416 | Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kas | 1e-47 | ||
| 3hnz_A | 427 | Structure Of E. Coli Fabf(C163a) In Complex With Pl | 2e-47 | ||
| 2gfv_A | 427 | Structure Of E. Coli Fabf (Kasii) C163q Mutant Leng | 4e-47 | ||
| 3o04_A | 413 | Crystal Structure Of The Beta-Keto-Acyl Carrier Pro | 8e-43 | ||
| 1ox0_A | 430 | The Crystal Structure Of Beta-Ketoacyl-[acyl Carrie | 1e-42 | ||
| 2alm_A | 431 | Crystal Structure Analysis Of A Mutant Beta-Ketoacy | 1e-42 | ||
| 2rjt_A | 428 | Crystal Structure Analysis Of A Surface Entropy Red | 2e-41 | ||
| 3u0f_A | 411 | The Structure Of Beta-Ketoacyl Synthase From Brucel | 9e-30 | ||
| 3lrf_A | 428 | Crystal Structure Of Beta-Ketoacyl Synthase From Br | 1e-29 | ||
| 2wgd_A | 416 | Crystal Structure Of Kasa Of Mycobacterium Tubercul | 4e-27 | ||
| 2wgf_A | 416 | Crystal Structure Of Mycobacterium Tuberculosis C17 | 1e-25 | ||
| 2byy_A | 418 | E. Coli Kas I H298e Mutation Length = 418 | 6e-25 | ||
| 2byz_A | 418 | Structure Of E. Coli Kas I H298q Mutant In Complex | 6e-25 | ||
| 1h4f_A | 406 | E. Coli Beta-Ketoacyl [acyl Carrier Protein] Syntha | 7e-25 | ||
| 1dd8_A | 406 | Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Pr | 7e-25 | ||
| 2byw_A | 418 | Structure Of Escherichia Coli Beta-Ketoacyl (Acyl C | 7e-25 | ||
| 1fj4_A | 406 | The Structure Of Beta-Ketoacyl-[acyl Carrier Protei | 8e-25 | ||
| 2gp6_A | 434 | X-Ray Crystal Structure Of Mycobacterium Tuberculos | 2e-23 | ||
| 1f91_A | 406 | Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In | 2e-21 | ||
| 2vb7_C | 406 | Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Ap | 2e-21 | ||
| 1ek4_A | 418 | Beta-Ketoacyl [acyl Carrier Protein] Synthase I In | 2e-21 | ||
| 3oyt_A | 410 | 1.84 Angstrom Resolution Crystal Structure Of 3-Oxo | 4e-20 | ||
| 1tqy_A | 424 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 8e-19 | ||
| 4ewg_A | 412 | Crystal Structure Of A Beta-Ketoacyl Synthase From | 1e-18 | ||
| 1tqy_B | 415 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 7e-06 | ||
| 2qo3_A | 915 | Crystal Structure Of [ks3][at3] Didomain From Modul | 1e-05 |
| >pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas Length = 431 | Back alignment and structure |
|
| >pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Bartonella Henselae Length = 424 | Back alignment and structure |
|
| >pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase Length = 438 | Back alignment and structure |
|
| >pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase Length = 444 | Back alignment and structure |
|
| >pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase Ii From Thermus Thermophilus Hb8 Length = 408 | Back alignment and structure |
|
| >pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis Length = 451 | Back alignment and structure |
|
| >pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis In Complex With Platencin Length = 451 | Back alignment and structure |
|
| >pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf) From Staphylococcus Aureus Length = 437 | Back alignment and structure |
|
| >pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii) Length = 427 | Back alignment and structure |
|
| >pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target, Implications From The Crystal Structure Of A Complex With The Inhibitor Cerulenin. Length = 412 | Back alignment and structure |
|
| >pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently Linked Dodecanoic Acid Length = 427 | Back alignment and structure |
|
| >pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii) From Synechocystis Sp Length = 416 | Back alignment and structure |
|
| >pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With Platensimycin Length = 427 | Back alignment and structure |
|
| >pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant Length = 427 | Back alignment and structure |
|
| >pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein Synthase Ii (Lmo2201) From Listeria Monocytogenes Length = 413 | Back alignment and structure |
|
| >pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 430 | Back alignment and structure |
|
| >pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 431 | Back alignment and structure |
|
| >pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction Mutant Of S. Pneumoniae Fabf Length = 428 | Back alignment and structure |
|
| >pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Bound To The Fragment 7-Hydroxycoumarin Length = 411 | Back alignment and structure |
|
| >pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis Length = 416 | Back alignment and structure |
|
| >pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa Variant Length = 416 | Back alignment and structure |
|
| >pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation Length = 418 | Back alignment and structure |
|
| >pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With C12 Fatty Acid Length = 418 | Back alignment and structure |
|
| >pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I K328r Length = 406 | Back alignment and structure |
|
| >pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I From Escherichia Coli Length = 406 | Back alignment and structure |
|
| >pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I Lys328ala Mutant Length = 418 | Back alignment and structure |
|
| >pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I In Complex With Thiolactomycin, Implications For Drug Design Length = 406 | Back alignment and structure |
|
| >pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb) Length = 434 | Back alignment and structure |
|
| >pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex With C10 Fatty Acid Substrate Length = 406 | Back alignment and structure |
|
| >pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo Structure After Soak In Peg Solution Length = 406 | Back alignment and structure |
|
| >pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex With Dodecanoic Acid To 1.85 Resolution Length = 418 | Back alignment and structure |
|
| >pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis Co92 Length = 410 | Back alignment and structure |
|
| >pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 424 | Back alignment and structure |
|
| >pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From Burkholderia Phymatum Stm815 Length = 412 | Back alignment and structure |
|
| >pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 415 | Back alignment and structure |
|
| >pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase Length = 915 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Length = 431 | Back alignment and structure |
|---|
Score = 487 bits (1255), Expect = e-173
Identities = 242/310 (78%), Positives = 277/310 (89%), Gaps = 3/310 (0%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GMVTPLG G ETTWRRLI GECGIR +T +DLKM +FD ET+L+ F QL+SK
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA VP G + GEF+E WL + +++A FI YA+CAADEAL DA+WLP+++ +KERTG
Sbjct: 61 VAAFVPYGSNPGEFDEALWL---NSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTG 117
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
VSIGGGIGSI D V+AAQ+ICEKRLRRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVT
Sbjct: 118 VSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVT 177
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N +PQEASR
Sbjct: 178 ACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASR 237
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PFDC RDGFVIGEGSGV+VLEE EHAK+RGAKIYAE+ GYGMSGDAHHITQP DGKGA+
Sbjct: 238 PFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAV 297
Query: 339 LAMTRALKQA 348
LAMTRAL+Q+
Sbjct: 298 LAMTRALRQS 307
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Length = 428 | Back alignment and structure |
|---|
Score = 473 bits (1219), Expect = e-167
Identities = 168/318 (52%), Positives = 215/318 (67%), Gaps = 15/318 (4%)
Query: 32 PPPLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHA 91
+RRVV+TG+G+V+PL G E TW+RL+ GE G R +T F+ +
Sbjct: 3 HHHHHHMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVT-------EFEVD----- 50
Query: 92 FGQLTSKVAAVVPCGISS-GEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSD 150
L ++A +P G + G FN D ++ K+ R + FI YA+ AAD+AL DA W P +
Sbjct: 51 --DLACQIACRIPVGDGTNGTFNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPEN 108
Query: 151 QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQ 210
+ RTGV IG GIG I V+A + +K RR+SPFFIP LIN+ASGHVS+K+ +
Sbjct: 109 DEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLR 168
Query: 211 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 270
GPNH+ VTACATG H+IGDAAR+I FGD+DVMVAGGTES + +S+AGF +AL+T+ N
Sbjct: 169 GPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERN 228
Query: 271 GTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 330
P ASRP+D RDGFV+GEG+G++VLEELEHA RGAKIYAEV GYGMSGDA HIT P
Sbjct: 229 DDPTAASRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAP 288
Query: 331 HIDGKGAILAMTRALKQA 348
G+GA M ALK+A
Sbjct: 289 TESGEGAQRCMVAALKRA 306
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Length = 451 | Back alignment and structure |
|---|
Score = 472 bits (1217), Expect = e-167
Identities = 138/329 (41%), Positives = 195/329 (59%), Gaps = 16/329 (4%)
Query: 22 SSSSRAEVFDPPPLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMG 81
E P S RVVVTGIG+V+PLGCG E W+RLI G G+R +
Sbjct: 7 HHMGTLEAQTQGPGSMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLG------- 59
Query: 82 NFDRETQLHAFGQLTSKVAAVVP--CGISSGEFNEDSWLNSKDHRSIARFIAYALCAADE 139
+ +L++KV V G F+ + + K+ R + RFI A+ AADE
Sbjct: 60 DDIAG-------ELSAKVGGTVQDVAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADE 112
Query: 140 ALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMA 199
AL +A W P + Q+ERT + GIG +A ++ + +RRLSPF IP L N+A
Sbjct: 113 ALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLA 172
Query: 200 SGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGF 259
+G +S+K+ F+GP VTACA +IGDA RMI+ G++DV++AGG E++ D +S+ GF
Sbjct: 173 AGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGF 232
Query: 260 CKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYG 319
+RAL+T ++ P ASRPFD RDGFV+GEG+ ++V+E L+HA RGA+ AE+ GYG
Sbjct: 233 AAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYG 292
Query: 320 MSGDAHHITQPHIDGKGAILAMTRALKQA 348
+ DA+H+T DG GA+ AM AL+
Sbjct: 293 TTADAYHMTAGPDDGSGAMRAMKLALRMG 321
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Length = 438 | Back alignment and structure |
|---|
Score = 470 bits (1212), Expect = e-166
Identities = 149/310 (48%), Positives = 200/310 (64%), Gaps = 16/310 (5%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TGIG+VTPLG G W RLI GE GI + + + +
Sbjct: 21 RRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLV-------GEEYK-------SIPCS 66
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA VP G G+FNE ++++ D +S++ A+ AA+ A+ D+ W P + + TG
Sbjct: 67 VAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATG 126
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V+IG G+ + + A K ++SPFF+P+IL+NMA+G VS++Y +GPNHA T
Sbjct: 127 VAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVST 186
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
AC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A R
Sbjct: 187 ACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--NSDPKLACR 244
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAI 338
PF RDGFV+GEG+ VLVLEE EHA +R A+IYAEV GYG+SGDA HIT P +G+GA+
Sbjct: 245 PFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGAL 304
Query: 339 LAMTRALKQA 348
M ALK A
Sbjct: 305 RCMAAALKDA 314
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Length = 434 | Back alignment and structure |
|---|
Score = 437 bits (1127), Expect = e-153
Identities = 97/313 (30%), Positives = 151/313 (48%), Gaps = 22/313 (7%)
Query: 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQL 95
VVVTGI M T L AETTW+ L+ + GIR + + FD L
Sbjct: 25 KAFPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFV--EEFD----------L 72
Query: 96 TSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKE 155
++ + D L + R + + + +A D
Sbjct: 73 PVRIGGHLL-------EEFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSPEVD---TN 122
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
R VSIG G+GS + V + + + ++ +SP + + + N A+ V ++ +
Sbjct: 123 RLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMT 182
Query: 216 AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
V+ACA+GA +I A + I G++D + GG E+ I+A+ +AGF + R + + N P
Sbjct: 183 PVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAG 242
Query: 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGK 335
A RPFD RDGFV GEG +L++E EHAK RGA I A + G ++ D H+ P +G+
Sbjct: 243 ACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGE 302
Query: 336 GAILAMTRALKQA 348
A A+TRA++ A
Sbjct: 303 RAGHAITRAIQLA 315
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Length = 416 | Back alignment and structure |
|---|
Score = 433 bits (1117), Expect = e-152
Identities = 98/313 (31%), Positives = 149/313 (47%), Gaps = 23/313 (7%)
Query: 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQL 95
VVVT + T + E+TW+ L+ GE GI + + L
Sbjct: 9 GGFPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALE-------DEFVTKW-----DL 56
Query: 96 TSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKE 155
K+ + DS + D R ++ + A D +
Sbjct: 57 AVKIGGHLK-------DPVDSHMGRLDMRRMSYVQRMGKLLGGQLWESAGSPEVD---PD 106
Query: 156 RTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA 215
R V +G G+G V++ ++ R++SP + I+ N A+ + ++ G +
Sbjct: 107 RFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMT 166
Query: 216 AVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275
V+AC++G+ +I A R I GD+DV V GG E I+AL +A F RA++T+ N P+
Sbjct: 167 PVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPER 225
Query: 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGK 335
ASRPFD RDGFV GE ++++E EHAK RGAK A + G G++ DA H+ P DG
Sbjct: 226 ASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGV 285
Query: 336 GAILAMTRALKQA 348
A AMTR+L+ A
Sbjct: 286 RAGRAMTRSLELA 298
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 408 | Back alignment and structure |
|---|
Score = 429 bits (1105), Expect = e-150
Identities = 149/311 (47%), Positives = 202/311 (64%), Gaps = 23/311 (7%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RRVVVTG+G +TP+G G E + + G+ G+R IT FD L
Sbjct: 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPIT-------RFDAS-------ALPV 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
++AA V + ++L+ K+ R + RF+ YAL AA AL DA P D ER
Sbjct: 47 RIAAEVD-------VDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERV 98
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
G +G GIG + +++ E+ R+SPFFIP ++ NMAS H++M+YGF GP+ V
Sbjct: 99 GTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVV 158
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACATGA ++G A RMIQ G++D+++AGGTE++I +++ F RAL+T+ N P++AS
Sbjct: 159 TACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKAS 217
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPF RDGFV+GEG+GVLVLE EHAKKRGA+IYAE+ G+G S DAHHIT+PH +GKGA
Sbjct: 218 RPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGA 277
Query: 338 ILAMTRALKQA 348
LAM RALK A
Sbjct: 278 ALAMARALKDA 288
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Length = 412 | Back alignment and structure |
|---|
Score = 426 bits (1098), Expect = e-149
Identities = 99/311 (31%), Positives = 153/311 (49%), Gaps = 23/311 (7%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
++RVV+TG+G VT LG + L G +R + ++D F L +
Sbjct: 5 MKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMP-------DWD------YFESLHT 51
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
++AA +P F + + K RS+ R YA+ A++ AL DA + + R
Sbjct: 52 RLAAPLP------GFAQPADWPRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRM 105
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV+ G GS+ M+ + ++ +++ + + +VS+ + +G
Sbjct: 106 GVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTS 165
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
+ACA+G+ +IG A I G +M+AGG E ++A F A +T+ N P
Sbjct: 166 SACASGSQAIGYAYENIAMGKQTLMLAGGAEELS-GPAVAVFDTLYATSTR-NDEPHLTP 223
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPFD RDG V+GEG+ LVLEE EHAK RGA I+AE+ G+G + D H+TQP
Sbjct: 224 RPFDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP--TASTM 281
Query: 338 ILAMTRALKQA 348
AM AL+ A
Sbjct: 282 ARAMQLALEDA 292
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Length = 430 | Back alignment and structure |
|---|
Score = 427 bits (1100), Expect = e-149
Identities = 135/331 (40%), Positives = 180/331 (54%), Gaps = 29/331 (8%)
Query: 24 SSRAEVFDPPPLSP------LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPED 77
SS L P L RVVVTG G+ +P+G E W L G+ GI IT
Sbjct: 2 SSHHHHHHSSGLVPRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGIT--- 58
Query: 78 LKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAA 137
FD AA + +F D + KD + YAL AA
Sbjct: 59 ----KFDHS-------DFDVHNAAEIQ------DFPFDKYFVKKDTNRFDNYSLYALYAA 101
Query: 138 DEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197
EA++ A ++R GV + GIG I + D + EK +R+ P +P+ L N
Sbjct: 102 QEAVNHANLDVEAL-NRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPN 160
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
MASG+V+M++G G + TAC++ +IGDA R I+FG DVM+ GGTE+SI ++A
Sbjct: 161 MASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIA 220
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRG 317
GF AL+T P AS PFD R+GFV+GEGSG+LVLE LEHA+KRGA I AEV G
Sbjct: 221 GFQALTALST--TEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVG 278
Query: 318 YGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
YG + DA+H+T PH +G+GAI A+ AL++A
Sbjct: 279 YGNTCDAYHMTSPHPEGQGAIKAIKLALEEA 309
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Length = 413 | Back alignment and structure |
|---|
Score = 425 bits (1096), Expect = e-149
Identities = 132/311 (42%), Positives = 190/311 (61%), Gaps = 23/311 (7%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
RRVVVTGIG VTP+G AET+W G G+ ++T + +
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMT-------RLNPD-------DFPV 48
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
K+AA + +F+ + +L K+ R + RF YA+ +A+ A+ D+ + D R
Sbjct: 49 KIAAELK------DFDVEKYLEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDS-NANRV 101
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV IG GIG + ++ + RR+SPFF+P ++ +M SG VS+++G +G N V
Sbjct: 102 GVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTV 161
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACAT +SIGDA ++I+ GD+D M+ GG E+ I +S+AGF ++AL+ N P+ A
Sbjct: 162 TACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSL--NPDPETAC 219
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPFD RDGF+IGEG+G+++LEE EHAK RGAKIYAE+ GYG +GDA+HIT P +G+GA
Sbjct: 220 RPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGA 279
Query: 338 ILAMTRALKQA 348
AM A+ A
Sbjct: 280 ARAMKMAIDDA 290
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Length = 427 | Back alignment and structure |
|---|
Score = 426 bits (1097), Expect = e-149
Identities = 134/311 (43%), Positives = 195/311 (62%), Gaps = 22/311 (7%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
RRVVVTG+GM++P+G E+TW+ L+ G+ GI I +FD +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLID-------HFDTS-------AYAT 62
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
K A +V +FN + ++ K+ R + FI Y + A +A+ D+ +++ R
Sbjct: 63 KFAGLVK------DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRI 115
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
G +IG GIG + + + R++SPFF+P ++NM +GH+++ YG +GP+ +
Sbjct: 116 GAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIA 175
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TA +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ AS
Sbjct: 176 TAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAAS 234
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RP+D RDGFV+G+G+G+LVLEE EHAKKRGAKIYAE+ G+GMS DA+H+T P +G GA
Sbjct: 235 RPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGA 294
Query: 338 ILAMTRALKQA 348
LAM AL+ A
Sbjct: 295 ALAMANALRDA 305
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 424 bits (1093), Expect = e-149
Identities = 132/311 (42%), Positives = 188/311 (60%), Gaps = 22/311 (7%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RVVVTG+G +TP+G + W+ L+ G GI IT FD
Sbjct: 6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPIT-------RFDAS-------DQAC 51
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
+ V +F+ +L+ K+ + + RF +A+CA+ +A++DAK + ++ +
Sbjct: 52 RFGGEVK------DFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINEL-NADEI 104
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV IG GIG + D ++ +K R SPF IP ++ NMASG ++ G +GPN+ V
Sbjct: 105 GVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTV 164
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACA G+++IGDA R++Q G + M+ GGTE++I LS AGF +RAL+ + N P AS
Sbjct: 165 TACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHAS 223
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPFD RDGFV+GEGSG+L+LEELE A RGAKIY E+ GY M+ DA+HIT P DG+GA
Sbjct: 224 RPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGA 283
Query: 338 ILAMTRALKQA 348
A+ ALK +
Sbjct: 284 TRAIAWALKDS 294
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Length = 437 | Back alignment and structure |
|---|
Score = 424 bits (1093), Expect = e-148
Identities = 133/311 (42%), Positives = 192/311 (61%), Gaps = 23/311 (7%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RVV+TG+G ++P+G +TTW + G GI +IT D E +
Sbjct: 27 NKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKIT-------RIDTE-------PYSV 72
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
+A + FN + ++ K+ R + RF YA+ AA EA+ DA+ ++ +R
Sbjct: 73 HLAGELK------NFNIEDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINEN-TADRI 125
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV IG GIG + A + + +K RR+SPFF+P ++ +MA+G VS+ G +GPN A V
Sbjct: 126 GVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATV 185
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACATG +SIG+A +++Q GD+D M+ GGTE+ I +++AGF SRAL+T N + A
Sbjct: 186 TACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST--NDDIETAC 243
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
RPF GRDGFV+GEG+G+LV+E LE A+ RGA IYAE+ GYG +GDA+HIT P +G+G
Sbjct: 244 RPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGG 303
Query: 338 ILAMTRALKQA 348
AM A+ A
Sbjct: 304 SRAMQAAMDDA 314
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Length = 406 | Back alignment and structure |
|---|
Score = 415 bits (1070), Expect = e-145
Identities = 98/312 (31%), Positives = 149/312 (47%), Gaps = 25/312 (8%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
++R V+TG+G+V+ +G + L G GI + S
Sbjct: 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQ-------ELKDS-------GMRS 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
V V + ++ K R ++ YA + ++A+ DA P R
Sbjct: 47 HVWGNVK-------LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRV 99
Query: 158 GVSIGGGIGSISDTVDAAQ-MICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
G+ G G GS V A M + L+ + P+ + + + + S ++ + G N++
Sbjct: 100 GLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSI 159
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
+ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN TP++A
Sbjct: 160 SSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKA 218
Query: 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 336
SR +D RDGFVI G G++V+EELEHA RGA IYAE+ GYG + D + P G+G
Sbjct: 219 SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEG 276
Query: 337 AILAMTRALKQA 348
A+ M A+
Sbjct: 277 AVRCMKMAMHGV 288
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Length = 428 | Back alignment and structure |
|---|
Score = 414 bits (1066), Expect = e-144
Identities = 110/311 (35%), Positives = 159/311 (51%), Gaps = 25/311 (8%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RRVVVTG+G+V+ +G E L + GI +
Sbjct: 22 MRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAE-------EYAEL-------GFRC 67
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
+V + + +S ++ + R R A+ A D+A+ DA + ERT
Sbjct: 68 QVHGAP-------DIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEEEV-SNERT 119
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
G+ +G G S VD+A + EK +R+ PF +P+ + + AS ++ + +G N++
Sbjct: 120 GIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSIS 179
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
+ACAT H IG+A MIQ+G D M AGG E LS+ F A+++KYN TP AS
Sbjct: 180 SACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTAS 238
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 337
R +D RDGFVI G+GVLVLE+LE A RGAKIY E+ GYG + D + + P G+GA
Sbjct: 239 RAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGA 296
Query: 338 ILAMTRALKQA 348
I M AL
Sbjct: 297 IRCMKMALSTV 307
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 424 | Back alignment and structure |
|---|
Score = 405 bits (1043), Expect = e-141
Identities = 93/316 (29%), Positives = 143/316 (45%), Gaps = 28/316 (8%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TG+G+ P G G W L G R I+ FD S+
Sbjct: 3 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRIS-------FFDPS-------PYRSQ 48
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA ++ + R +A+ A EA + L D R G
Sbjct: 49 VAAEAD------FDPVAEGFGPRELDRMDRASQFAVACAREAFAASG-LDPDTLDPARVG 101
Query: 159 VSIGGGIGSISDTVDAAQMICEK------RLRRLSPFFIPRILINMASGHVSMKYGFQGP 212
VS+G + + + ++ + LS ++ ++ V+ G +GP
Sbjct: 102 VSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGP 161
Query: 213 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
T C +G S+G+A R I+ G +DVM AG ++ I + +A F RA T + N
Sbjct: 162 VTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR-NDD 220
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
P+ ASRPFD RDGFV+ EG+ + VLE+ + A RGA+I+AE+ GY +A+H+T
Sbjct: 221 PEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKA 280
Query: 333 DGKGAILAMTRALKQA 348
DG+ + AL ++
Sbjct: 281 DGREMAETIRVALDES 296
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 415 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-137
Identities = 79/311 (25%), Positives = 130/311 (41%), Gaps = 28/311 (9%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
+ V++TG+G+V P G G W ++ G G+ +T FD + +
Sbjct: 9 KSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVT-------RFDVS-------RYPAT 54
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
+A + +F+ + + AL AAD AL DAK P G
Sbjct: 55 LAGQID------DFHAPDHIPGRLLPQTDPSTRLALTAADWALQDAKADPESL-TDYDMG 107
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V G T + + + + +S + + +G +S+++G +GP+ A V
Sbjct: 108 VVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVA 167
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
A G ++G A R I+ G + ++V+GG +S++D S ++T P A
Sbjct: 168 EQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST--ATDPDRAYL 224
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGA-KIYAEVRGYGMSGDAHHITQPHIDGKGA 337
PFD G+V GEG +LVLE+ A+ RG Y E+ G + D + G
Sbjct: 225 PFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGR---PAGL 281
Query: 338 ILAMTRALKQA 348
A+ AL A
Sbjct: 282 ERAIRLALNDA 292
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 368 bits (946), Expect = e-116
Identities = 63/343 (18%), Positives = 108/343 (31%), Gaps = 46/343 (13%)
Query: 16 DLSRYFSSSSRAEVFDPPPLSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITP 75
DL +S+ G + ET + G P
Sbjct: 931 DLE--PFEASKET----------AEQFKHQHGDKVDIFEIPET-GEYSVKLLKGATLYIP 977
Query: 76 EDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNS-KDHRSIARFIAYAL 134
+ L+ FDR VA +P G +N ++ S + + L
Sbjct: 978 KALR---FDR------------LVAGQIPTG-----WNAKTYGISDDIISQVDPITLFVL 1017
Query: 135 CAADEALHDAKWLPS----DQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFF 190
+ EA + G G G+G +S + + +
Sbjct: 1018 VSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDE-PVQNDIL 1076
Query: 191 IPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESS 250
+ M++ + GP V ACAT S+ I G + + + GG +
Sbjct: 1077 QESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDF 1136
Query: 251 IDALSMAGFCKSRALTT-----KYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAK 305
+ F +A + ++ TP E SRP R+GF+ +G+G+ ++ + + A
Sbjct: 1137 QE-EGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLAL 1195
Query: 306 KRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
K G IY V + D + P GKG +
Sbjct: 1196 KMGVPIYGIVAMAATATDKIGRSVPA-PGKGILTTAREHHSSV 1237
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 6/136 (4%)
Query: 215 AAVTACATGAHSIGDAARMIQ--FGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 272
+ A + D G + A SS+ S K R
Sbjct: 1199 VPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREA 1258
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332
+ + + E + ++ E +R +I+ E +
Sbjct: 1259 QIKDWVENELE---ALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAA-QQQWGNDFY 1314
Query: 333 DGKGAILAMTRALKQA 348
I + AL
Sbjct: 1315 KRDPRIAPLRGALATY 1330
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 303 bits (776), Expect = 3e-93
Identities = 59/302 (19%), Positives = 96/302 (31%), Gaps = 33/302 (10%)
Query: 57 ETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116
T + + G + Q VA +P G ++
Sbjct: 1133 PETGQYTVRLRKGAT-LLIPK--------------ALQFDRLVAGQIPTG-----WDARR 1172
Query: 117 WLNSKDH-RSIARFIAYALCAADEALHDAKWLPSDQGQK----ERTGVSIGGGIGSISDT 171
+ +D + + Y L + EAL + + K G IG G+G S
Sbjct: 1173 YGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSAL 1232
Query: 172 VDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAA 231
+ + + MA+ + GP V ACAT S+
Sbjct: 1233 RGMYKDRYLDK-PVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGY 1291
Query: 232 RMIQFGDSDVMVAGG-----TESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286
I G + V + GG E S + +M ++ + P E SRP R+G
Sbjct: 1292 DTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFAR-GREPGEMSRPTSTTRNG 1350
Query: 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 346
F+ +G GV V+ + A + G IY V + D + P G+G +
Sbjct: 1351 FMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPA-PGQGVLTTAREKSG 1409
Query: 347 QA 348
Sbjct: 1410 NF 1411
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 295 bits (757), Expect = 1e-90
Identities = 55/302 (18%), Positives = 97/302 (32%), Gaps = 33/302 (10%)
Query: 57 ETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116
T + G P+ L+ VA +P G +N +
Sbjct: 1158 PETGEYSVKLLKGATLYIPKALR---------------FDRLVAGQIPTG-----WNAKT 1197
Query: 117 WLNS-KDHRSIARFIAYALCAADEALHDAKWLPS----DQGQKERTGVSIGGGIGSISDT 171
+ S + + L + EA + G G G+G +S
Sbjct: 1198 YGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSAL 1257
Query: 172 VDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAA 231
+ + + + M++ + GP V ACAT S+
Sbjct: 1258 RGMFKDRFKDE-PVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGV 1316
Query: 232 RMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT-----KYNGTPQEASRPFDCGRDG 286
I G + + + GG + + F +A + ++ TP E SRP R+G
Sbjct: 1317 ETILSGKARICIVGGYDDFQE-EGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNG 1375
Query: 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 346
F+ +G+G+ ++ + + A K G IY V + D + P GKG +
Sbjct: 1376 FMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPA-PGKGILTTAREHHS 1434
Query: 347 QA 348
Sbjct: 1435 SV 1436
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 5e-14
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 19/155 (12%)
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
M + +S + F+GP+ TAC++ ++ A + I+ G+ V GG + S
Sbjct: 139 MMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSL 198
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRG 317
F K L+ R FD G+ E ++L + A+ ++YA +
Sbjct: 199 QFMKLGMLS------QDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLAR----RVYATILN 248
Query: 318 YGMSGDAHH---ITQPHIDGKGAILAMTRALKQAY 349
G + D +T P G + ++ Y
Sbjct: 249 AGTNTDGSKEQGVTFP--SG----DVQEQLIRSLY 277
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
+ASG V+ G +GP TAC++G ++ A ++ + + +AGG +
Sbjct: 177 VASGRVAYCLGLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFT 236
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRG 317
F L +PF DGF + EG+GVLVL+ L A++ G + A +RG
Sbjct: 237 EFRSQGGLA------ADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRG 290
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 257
+ASG +S G +GP+ + TAC++ ++ A ++ G+S + V GG
Sbjct: 155 VASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFV 214
Query: 258 GFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRG 317
F + RAL S+ F G DGF EG +++LE L A++ G ++ A VRG
Sbjct: 215 DFSRQRALA------ADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRG 268
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 198 MASGHVSMKYGFQGPNHAAV---TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL 254
M + +S + F+GP ++ TAC++ ++ +A + I G + GG +
Sbjct: 141 MMANRLSFFFDFRGP---SIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPN 197
Query: 255 SMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAE 314
+ F + L+ P+ + FD +G+ EG ++L + A+ ++YA
Sbjct: 198 TSVQFLRLGMLS------PEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLAR----RVYAT 247
Query: 315 VRG 317
+
Sbjct: 248 ILN 250
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 3e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G ++ AAR I G+ V + G ES
Sbjct: 89 CGSGLEAVAQAARAIWAGEGKVYIGSGVES 118
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* Length = 390 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C + ++ AA+ I G+ DV V GG E
Sbjct: 94 CGSSMSALHTAAQAIMTGNGDVFVVGGVEH 123
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} Length = 387 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 1e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C + ++ DAARMI GD+ V + GG E
Sbjct: 91 CGSSMQALHDAARMIMTGDAQVCLVGGVEH 120
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A Length = 393 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C++G ++ D A I+ G D+ +A G ES
Sbjct: 101 CSSGLTAVNDIANKIKVGQIDIGLALGVES 130
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} Length = 394 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C++G +I AA IQ G S+V+VAGG E+
Sbjct: 91 CSSGMQAIMSAAMQIQLGVSEVVVAGGVEA 120
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} Length = 396 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G S+ A+++I GD+D+M+ GG E+
Sbjct: 93 CGSGLRSVSMASQLIALGDADIMLVGGAEN 122
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} Length = 395 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G S+ AA+ I G++DV++AGGTE+
Sbjct: 91 CGSGLKSVQLAAQSITSGENDVVIAGGTEN 120
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C++G ++ A I+ G D+ +A G ES
Sbjct: 117 CSSGLQAVASIAGGIRNGSYDIGMACGVES 146
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A Length = 442 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 7e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C++G ++ D A I+ G D+ + G ES
Sbjct: 118 CSSGLQAVADVAAAIKAGFYDIGIGAGLES 147
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... Length = 392 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G ++ + I GD+ ++VAGG ES
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES 118
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A Length = 397 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
C +G ++ A + I GDS ++VAGG E+
Sbjct: 92 CGSGLKAVCLAVQSIGIGDSSIVVAGGMEN 121
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* Length = 395 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 4e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
CA+G +I A++ + G DVMVAGG ES
Sbjct: 94 CASGMKAIMMASQSLMCGHQDVMVAGGMES 123
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} Length = 407 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 220 CATGAHSIGDAARMIQFGDSDVMVAGGTES 249
CA+G ++ AA+ ++ G D+++AGG ES
Sbjct: 96 CASGLEAVNTAAQKVRSGWDDLVLAGGVES 125
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 100.0 | |
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 100.0 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 100.0 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 100.0 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 100.0 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 100.0 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 100.0 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 100.0 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 100.0 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 100.0 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 100.0 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 100.0 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 100.0 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 100.0 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 100.0 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 100.0 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 100.0 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 100.0 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 100.0 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 100.0 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 100.0 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 99.89 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 99.89 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 99.88 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 99.88 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 99.87 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 99.87 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 99.86 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 99.86 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 99.84 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 99.84 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 99.83 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 99.82 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.8 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 99.8 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 99.8 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.78 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.78 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 99.78 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 99.76 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 99.75 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 99.75 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 99.74 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 99.72 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 99.64 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 99.64 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 99.61 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 99.6 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 99.55 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.54 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 99.53 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 99.53 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 99.51 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 99.5 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 99.48 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 99.48 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 99.46 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 99.45 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 99.43 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 99.41 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 99.39 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.37 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 99.35 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 99.34 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 99.33 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 99.32 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 99.31 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 99.3 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 99.27 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 99.23 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 99.19 | |
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 99.17 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 99.12 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 99.12 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 99.06 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 98.89 |
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-51 Score=392.01 Aligned_cols=297 Identities=56% Similarity=0.947 Sum_probs=271.8
Q ss_pred CCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCC-CCCCCCCCC
Q 018905 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCG-ISSGEFNED 115 (349)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~fd~~ 115 (349)
.|++|||||+|+++|.|.+.++||++|++|+++++++++++ +..++.++++.++.. .....||+.
T Consensus 8 ~~~~~viTG~G~vsp~g~~~~~~w~~L~~G~s~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~fd~~ 73 (428)
T 3kzu_A 8 HMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFE--------------VDDLACQIACRIPVGDGTNGTFNPD 73 (428)
T ss_dssp -CCCEEEEEEEEECSSCBSHHHHHHHHHTTCCCEEECCSSC--------------CTTSSCCEEECCCBSSSSTTCBCGG
T ss_pred cccceEEEeceEECCCcCCHHHHHHHHHcCCCeeeeCCccc--------------cccCcCceeeEecccccccccCChh
Confidence 48899999999999999999999999999999999998755 334566778888721 123459999
Q ss_pred CCCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhh
Q 018905 116 SWLNSKDHRSIARFIAYALCAADEALHDAKWLPSD-QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRI 194 (349)
Q Consensus 116 ~~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~-~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
+||++++.+.|||+++|+++++++||+|||+++++ ++ ..++||++|++.++...+.+.+..+...++..++|+.+++.
T Consensus 74 ~~i~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~~id-~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (428)
T 3kzu_A 74 LHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDED-QVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGR 152 (428)
T ss_dssp GTSCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCSHHH-HHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTT
T ss_pred hcCCHHHHHhCCHHHHHHHHHHHHHHHhcCCChhhhcc-ccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccc
Confidence 99999999999999999999999999999999876 53 77899999999999999999999899999999999999999
Q ss_pred hhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCC
Q 018905 195 LINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274 (349)
Q Consensus 195 ~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (349)
+.++.+++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||||+|.++++.....|..++.++......++
T Consensus 153 ~~~~~a~~is~~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~ 232 (428)
T 3kzu_A 153 LINLASGHVSIKHKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPT 232 (428)
T ss_dssp CTTHHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGG
T ss_pred hhhhHHHHHHHHcCCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeeecCcCCHHHHHHHHHccccccCccCCcc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999988865555667
Q ss_pred CCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 275 ~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
..++||+.+++|+++||||+++||+++++|+++|.+||++|.|++.++|+++++.|.+.+.++.+++++||++|
T Consensus 233 ~~~~pfd~~~~G~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~A 306 (428)
T 3kzu_A 233 AASRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRA 306 (428)
T ss_dssp GTCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHH
T ss_pred cccCCcccCCCceeecCceEEEEEccHHHHHhCCCceEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999986
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=390.00 Aligned_cols=289 Identities=46% Similarity=0.812 Sum_probs=269.1
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
+++|+|||+|+++|+|.+.++||++|++|++++.+++.++ ...++.++++.+++ ||+.+|
T Consensus 17 ~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~v~~------fd~~~~ 76 (427)
T 3ho9_A 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFD--------------TSAYATKFAGLVKD------FNCEDI 76 (427)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------CTTCSCCEEECCSS------CCCTTT
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCceeeCCccc--------------cccCccceeeEcCC------CChhhc
Confidence 6789999999999999999999999999999999988644 33456778888887 999999
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
|++++.+.|||+++|+++++++||+|||+.+++++ ..++||++|++.++....+..+..+...++..+.|+.+++.+.+
T Consensus 77 i~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~i~-~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (427)
T 3ho9_A 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEEN-ATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVN 155 (427)
T ss_dssp SCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCTTT-GGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTT
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHHCCCCccccc-ccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccch
Confidence 99999999999999999999999999999998875 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||||+|.+.++..+..|..++.++.. .+.+++.|
T Consensus 156 ~~a~~is~~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~-~~~~~~~~ 234 (427)
T 3ho9_A 156 MVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAAS 234 (427)
T ss_dssp HHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCHHHHC
T ss_pred HHHHHHHHHhCCCCCeecccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhccCcccC-CCCCCccc
Confidence 99999999999999999999999999999999999999999999999999998899999999999988853 23345679
Q ss_pred CCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+||+.+++|+++||||+++||+++++|+++|.+||++|.|++.++|+++++.|.+.+.++.+++++||++|
T Consensus 235 ~pfd~~~~G~v~geGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~A 305 (427)
T 3ho9_A 235 RPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDA 305 (427)
T ss_dssp CTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSBTTBCCTTCHHHHHHHHHHHHHH
T ss_pred CCccCCCCCceeeeeEEEEEEccHHHHHHCCCcEEEEEEEEeecCCCCCcCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999989999999999999986
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=387.27 Aligned_cols=290 Identities=45% Similarity=0.762 Sum_probs=266.2
Q ss_pred CCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
+|++|+|||+|+++|.|.+.++||++|++|++++.++++++ ...++.++++.+++ ||+.+
T Consensus 5 ~m~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~i~~------fd~~~ 64 (416)
T 1e5m_A 5 EKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFD--------------ASDQACRFGGEVKD------FDATQ 64 (416)
T ss_dssp -CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------CTTSSCCEEECCCS------CCGGG
T ss_pred CCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCeEeeCCccc--------------cccCccceeEEeCC------CCccc
Confidence 36789999999999999999999999999999999987543 23456677888876 99888
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhh
Q 018905 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (349)
Q Consensus 117 ~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
++++++.+.|||+++|+++++++||+|||+++++++ ..++||++|++.++....++.+..+...++..++|+.+++.+.
T Consensus 65 ~~~~~~~~~~d~~~~l~l~aa~~Al~dAg~~~~~i~-~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 143 (416)
T 1e5m_A 65 FLDRKEAKRMDRFCHFAVCASQQAINDAKLVINELN-ADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIA 143 (416)
T ss_dssp TSCHHHHHTSCHHHHHHHHHHHHHHHHHTCCCCTTT-GGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHST
T ss_pred cCCHHHHHhcCHHHHHHHHHHHHHHHHcCCChhhcC-ccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhh
Confidence 899999999999999999999999999999988875 8899999999999988888888888888888899999999999
Q ss_pred hHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCC
Q 018905 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (349)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (349)
+.++++|++.||++||+++|+++|+|++.||++|+++|++|++|++||||+|.++++..+..|..++.++.. .++|++.
T Consensus 144 ~~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~ls~~-~~~p~~~ 222 (416)
T 1e5m_A 144 NMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHA 222 (416)
T ss_dssp THHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCGGGT
T ss_pred HHHHHHHHHHhCCCCceeCccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcCCccCC-CCCCccc
Confidence 999999999999999999999999999999999999999999999999999987899888889888888743 3346789
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+|||.+++|+++||||+++||+++++|+++|.++|++|+|++.++|+.+++.|++++.++.++|++||++|
T Consensus 223 ~rpfd~~~~G~v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~a 294 (416)
T 1e5m_A 223 SRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDS 294 (416)
T ss_dssp CCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHH
T ss_pred cccCccCCCCceeeeeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-50 Score=386.45 Aligned_cols=290 Identities=46% Similarity=0.780 Sum_probs=270.7
Q ss_pred CCCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCC
Q 018905 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNED 115 (349)
Q Consensus 36 ~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~ 115 (349)
|+|++|+|||+|+++|.|.+.++||++|.+|++++++++.++ ...++.++++.++. ||+.
T Consensus 1 M~~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~v~~------fd~~ 60 (413)
T 3o04_A 1 MDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLN--------------PDDFPVKIAAELKD------FDVE 60 (413)
T ss_dssp CCCCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------GGGSSCCEEECCSS------CCGG
T ss_pred CCCCCEEEEEeEEECCCCCCHHHHHHHHHcCCCceeeCCccc--------------cccCccccccccCC------CChh
Confidence 457899999999999999999999999999999999997654 23455667888877 9999
Q ss_pred CCCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhh
Q 018905 116 SWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (349)
Q Consensus 116 ~~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
+|+++++.+.|||+++|+++++++||+|||+++++++ ..++|||+|++.++....+..+..+...++..++|+.+++.+
T Consensus 61 ~~i~~~~~~~~d~~~~l~l~Aa~~AL~dAGl~~~~id-~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 139 (413)
T 3o04_A 61 KYLEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSN-ANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMI 139 (413)
T ss_dssp GTSCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCTTT-GGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHS
T ss_pred hccCHHHHhhCCHHHHHHHHHHHHHHHHcCCChhHcC-ccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhccc
Confidence 9999999999999999999999999999999998885 899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCC
Q 018905 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (349)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (349)
.++++++|++.||++||+++|+++|+|++.||..|+++|++|++|++||||+|.++++.....|..++.++. ..+|++
T Consensus 140 ~~~~a~~ia~~lgl~gp~~~v~~aCss~~~Al~~A~~~I~~G~~d~~lvgG~e~~~~~~~~~~~~~~~~ls~--~~~p~~ 217 (413)
T 3o04_A 140 PDMGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSL--NPDPET 217 (413)
T ss_dssp TTHHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC--CCCTTT
T ss_pred ccHHHHHHHHHhCCCCcceeecchhHHHHHHHHHHHHHHHcCCCCEEEEeEEcccCCHHHHHHHHhcccccC--CCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998884 345778
Q ss_pred CCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 276 ~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.++||+.+++|+++||||+++||+++++|+++|.++|++|.|++.++|+++++.|.+.+.++.+++++||++|
T Consensus 218 ~~~pfd~~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~al~~a 290 (413)
T 3o04_A 218 ACRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDA 290 (413)
T ss_dssp SCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHH
T ss_pred CcCCCcCCCCCceEeccEEEEEEeeHHHHHhCCCeEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999998989999999999986
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-50 Score=386.85 Aligned_cols=290 Identities=45% Similarity=0.698 Sum_probs=266.7
Q ss_pred CCCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCC
Q 018905 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNED 115 (349)
Q Consensus 36 ~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~ 115 (349)
|+|++|+|||+|+++|.|.+.++||++|.+|++++.++++++ ...++.++++.+++ ||+.
T Consensus 20 m~m~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~v~~------fd~~ 79 (430)
T 1ox0_A 20 MKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFD--------------HSDFDVHNAAEIQD------FPFD 79 (430)
T ss_dssp CCCCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECCSSC--------------CTTSSCCEEECCSS------CCHH
T ss_pred ccCCCEEEEEEEEECCCcCCHHHHHHHHHcCCCeeeeCCccc--------------ccCCccceeeeccC------CChh
Confidence 447899999999999999999999999999999999987543 23456677888876 9988
Q ss_pred CCCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhh
Q 018905 116 SWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (349)
Q Consensus 116 ~~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
+++++++.++|||+++|+++++++||+|||+++++++ ..++||++|++.++.....+.+..+...+...++|+.+++.+
T Consensus 80 ~~~~~~~~~~~d~~~~l~l~aa~~AL~dAG~~~~~i~-~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (430)
T 1ox0_A 80 KYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN-RDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKAL 158 (430)
T ss_dssp HHCCGGGGGTCCHHHHHHHHHHHHHHHHTTCCTTTSC-GGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHS
T ss_pred hcCCHHHHHhcCHHHHHHHHHHHHHHHHcCCChhhcC-ccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhccc
Confidence 8899999999999999999999999999999988875 889999999999998888888888888888899999999999
Q ss_pred hhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCC
Q 018905 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (349)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (349)
.++++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||||+|.++++..+..|..++.++. .+.|++
T Consensus 159 ~~~~a~~is~~lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~--~~~p~~ 236 (430)
T 1ox0_A 159 PNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST--TEDPTR 236 (430)
T ss_dssp TTHHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC--CSSTTS
T ss_pred hhHHHHHHHHHhcCCCceEeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhCCCccC--CCCCCC
Confidence 999999999999999999999999999999999999999999999999999999888988888888888874 345778
Q ss_pred CCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 276 ~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.|+|||.+++|+++||||+++||+++++|+++|.+||++|.|++.++|+.+++.|++.+.++.++|++||++|
T Consensus 237 ~~~pFd~~~~g~~~geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~A 309 (430)
T 1ox0_A 237 ASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEA 309 (430)
T ss_dssp SSCTTBTTCCSBCBCCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCccccceEEEEEECcHHHHHhCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999888999999999999976
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-50 Score=387.18 Aligned_cols=291 Identities=46% Similarity=0.776 Sum_probs=265.8
Q ss_pred CCCCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCC
Q 018905 35 LSPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNE 114 (349)
Q Consensus 35 ~~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~ 114 (349)
|.||++|+|||+|+++|.|.+.++||++|++|++++.++++++ ...++.++++.+++ ||+
T Consensus 24 m~~~~~vaI~G~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~i~~------fd~ 83 (437)
T 2gqd_A 24 MSQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRID--------------TEPYSVHLAGELKN------FNI 83 (437)
T ss_dssp ---CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------CTTSSCCEEECCSS------CCG
T ss_pred ccCCCCEEEEEeeEECCCCCCHHHHHHHHHcCCCceeeCCccc--------------cccCccceeEEeCC------CCh
Confidence 4456899999999999999999999999999999999987533 23456677888876 998
Q ss_pred CCCCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhh
Q 018905 115 DSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRI 194 (349)
Q Consensus 115 ~~~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
.+++++++.+.|||+++|+++++++||+|||+++++++ ..+++||+|++.+++...+..+..+...+...++|+.+++.
T Consensus 84 ~~~~~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~i~-~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 162 (437)
T 2gqd_A 84 EDHIDKKEARRMDRFTQYAIVAAREAVKDAQLDINENT-ADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPML 162 (437)
T ss_dssp GGTSCSTTTTTSCHHHHHHHHHHHHHHHHHTCCCCTTT-GGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHH
T ss_pred hcCCCHHHHHhcCHHHHHHHHHHHHHHHHcCCCccccC-CcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhc
Confidence 87899999999999999999999999999999988875 88999999999999888888888888888888999999999
Q ss_pred hhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCC
Q 018905 195 LINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274 (349)
Q Consensus 195 ~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (349)
+.+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||||+|.++++.....|..++.++. .++|+
T Consensus 163 ~~~~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~--~~~p~ 240 (437)
T 2gqd_A 163 IPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST--NDDIE 240 (437)
T ss_dssp STTHHHHHHHHHHTCCSSEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC--CCCTT
T ss_pred chhHHHHHHHHHhCCCCceEEecCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCccC--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999998889998888999988875 34477
Q ss_pred CCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 275 EASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 275 ~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+.|+|||.+++|+++||||+++||+++++|+++|.++|++|+|++.++|+.+++.|++++.++.++|++||++|
T Consensus 241 ~~~~pfd~~~~G~v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~Al~~A 314 (437)
T 2gqd_A 241 TACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDA 314 (437)
T ss_dssp TSSCTTCTTCCSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCceeeceEEEEEECcHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999988899999999999986
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=382.59 Aligned_cols=287 Identities=34% Similarity=0.510 Sum_probs=264.3
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|++|+|||+|+++|.|.+.++||++|++|++++.+++.+++. ..++.++++.+++ ||+.+|
T Consensus 5 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~-------------~~~~~~~~~~v~~------fd~~~~ 65 (412)
T 4ewg_A 5 MKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYF-------------ESLHTRLAAPLPG------FAQPAD 65 (412)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCCEECGGGGGS-------------SSCCCCEEBCCSC------CCCCTT
T ss_pred CCEEEEEeeEEECCCcCCHHHHHHHHHcCCCceeeCCccccc-------------cCCccceeeecCC------CChhhh
Confidence 688999999999999999999999999999999999875421 1455677888876 999999
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCC-CCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKW-LPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi-~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
+++++.+.||++++|+++++++||+|||+ ++++++ ..++||++|++.+++...++++..+...+...++++.+++.+.
T Consensus 66 i~~~~~~~~d~~~~l~l~aa~~Al~dAGl~~~~~i~-~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (412)
T 4ewg_A 66 WPRKKTRSMGRVSMYAVRASELALADAGFAGDESIS-DGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMP 144 (412)
T ss_dssp SCHHHHTTCCHHHHHHHHHHHHHHHHHTCTTCGGGG-TTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHST
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHhcCCCCccccC-ccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcc
Confidence 99999999999999999999999999999 666664 8899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCC
Q 018905 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (349)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (349)
+.++++|++.||++||+++|+++|+|++.||++|+++|++|++|++||||+|. +++.....|..++.++.. ...|++.
T Consensus 145 ~~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~-~s~~~~~~~~~~~~l~~~-~~~p~~~ 222 (412)
T 4ewg_A 145 HTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTR-NDEPHLT 222 (412)
T ss_dssp THHHHHHHHHTTCCSCEEECCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHTTTCBCCC-TTCGGGC
T ss_pred cHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccc-CCHHHHHHHHHhhccccC-CCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999 899988999999888753 4556789
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+|||.+++|+++||||+++||+++++|+++|.+||++|.|++.++|+++++.|+ +.++.++|++||++|
T Consensus 223 ~rpfd~~~~G~~~geGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~--~~~~~~ai~~Al~~A 292 (412)
T 4ewg_A 223 PRPFDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPT--ASTMARAMQLALEDA 292 (412)
T ss_dssp CCTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSSCC--HHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCceECeEEEEEEccHHHHhhCCCcEEEEEEEEEEcCCCCCCCCCC--HHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999998884 678899999999986
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=388.27 Aligned_cols=286 Identities=34% Similarity=0.549 Sum_probs=255.2
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|++|+|||+|+++|+|.+.++||++|++|++++.+++.++ ...++.++++.++ ||+.+|
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~v~-------fd~~~~ 59 (406)
T 2vba_A 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELK--------------DSGMRSHVWGNVK-------LDTTGL 59 (406)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHH--------------HTTCSCCEEECCC-------CCCTTS
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeEEeCCccc--------------ccCCccceEEEec-------CChhhc
Confidence 3689999999999999999999999999999999987533 2234556677663 888888
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CceEEEEeCCCCChHHHHHHHHHHH-HhccCCCCCcchhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQK-ERTGVSIGGGIGSISDTVDAAQMIC-EKRLRRLSPFFIPRIL 195 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~-~~~gv~~g~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 195 (349)
+++++.++|||+++|+++++++||+|||+++++++ . .++|||+|++.+++...++.+..+. ..+...++|+.+++.+
T Consensus 60 ~~~~~~~~~d~~~~l~l~aa~~Al~dAg~~~~~i~-~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (406)
T 2vba_A 60 IDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ-NNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAM 138 (406)
T ss_dssp SCHHHHTTCCHHHHHHHHHHHHHHHHHTCCHHHHT-TCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHS
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHCCCChhHcC-CCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhh
Confidence 99999999999999999999999999999876664 5 8999999999999888888777665 4555667899999999
Q ss_pred hhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCC
Q 018905 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (349)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (349)
.+.++++|++.||++||+++|+++|+|++.||++|+++|++|++|++||||+|.+.++.... |..++.++..++++|++
T Consensus 139 ~~~~a~~is~~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~-~~~~~~ls~~~~~~p~~ 217 (406)
T 2vba_A 139 ASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEK 217 (406)
T ss_dssp TTHHHHHHHTTTTCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHHHHHH-HHHTTCBCCSCTTSGGG
T ss_pred hHHHHHHHHHhccCCCceeeeccchhHHHHHHHHHHHHHHcCCCCEEEEeeeccccChHHHH-HhhccccccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999977777777 88888888543445678
Q ss_pred CCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 276 ~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.|+|||.+++|+++||||+++||+++++|+++|.+||++|+|++.++|+.+++.|+ +.++.++|++||++|
T Consensus 218 ~~~pfd~~~~G~v~gEGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~t~p~--~~~~~~ai~~al~~a 288 (406)
T 2vba_A 218 ASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHGV 288 (406)
T ss_dssp SCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCTTSCC--SHHHHHHHHHHHTTC
T ss_pred ccCcCcCCCCceEeeceEEEEEeCcHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCC--HHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999998877 778899999999875
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=386.97 Aligned_cols=299 Identities=46% Similarity=0.767 Sum_probs=271.3
Q ss_pred CCCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCC--CCCCCCC
Q 018905 36 SPLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCG--ISSGEFN 113 (349)
Q Consensus 36 ~~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~fd 113 (349)
.|+++|+|||+|+++|.|.+.++||++|.+|++++++++.++ ...++.++++.++.. .....||
T Consensus 21 ~m~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~s~i~~~~~~~--------------~~~~~~~~~g~v~~~~~~~~~~fd 86 (451)
T 4ddo_A 21 SMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDI--------------AGELSAKVGGTVQDVAEDPEGGFD 86 (451)
T ss_dssp ---CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCHHH--------------HTTSSCCEEECCCCTTTCTTTCCC
T ss_pred cCCCCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeCCccc--------------cccccCccceEccccccccccccc
Confidence 356899999999999999999999999999999999998643 234566778888731 1123599
Q ss_pred CCCCCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhh
Q 018905 114 EDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR 193 (349)
Q Consensus 114 ~~~~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
+.+||++++.+.||++++|+++++++||+|||++++++.+..++||++|++.++....+..+..+...+...++|+.+++
T Consensus 87 ~~~~i~~~~~~~~d~~~~L~l~Aa~~AL~dAGl~~~~i~d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (451)
T 4ddo_A 87 PERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPF 166 (451)
T ss_dssp GGGTSCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCSHHHHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCCTTHHHH
T ss_pred hhhhCCHHHHhhCCHHHHHHHHHHHHHHHHcCCChhhcccccceEEEEeecCCchHHHHHHHHHHHhcCccccCcchhhc
Confidence 99999999999999999999999999999999998876227899999999999999999999988888888999999999
Q ss_pred hhhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCC
Q 018905 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (349)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (349)
.+.++++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||+|+|.+.++..+..|...+.++..+.+++
T Consensus 167 ~~~~~~a~~ia~~lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~vLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~ 246 (451)
T 4ddo_A 167 FLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEP 246 (451)
T ss_dssp HCTTHHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSG
T ss_pred cccchHHHHHHHHhcCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeccccccCHHHHHHHHHHhhhccCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999987666667
Q ss_pred CCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 274 ~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.+.++|||.+++|+++||||+++||+++++|+++|.+|+++|.|++.++|+.+++.|.+.+.++.+++++||++|
T Consensus 247 ~~~~~pfd~~~~g~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~al~~A 321 (451)
T 4ddo_A 247 VRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMG 321 (451)
T ss_dssp GGSCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCcEEeceEEEEEEeeHHHHHhCCCceEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999999999999999999999999999999999888889999999999986
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=381.28 Aligned_cols=288 Identities=51% Similarity=0.864 Sum_probs=264.8
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|++|+|||+|+++|.|.+.++||++|++|+++++++++++ ...++.++++.+ + ||+.++
T Consensus 1 M~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~--------------~~~~~~~~~~~~-~------fd~~~~ 59 (408)
T 1j3n_A 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFD--------------ASALPVRIAAEV-D------VDPGAY 59 (408)
T ss_dssp CCCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSC--------------CTTSSCCEEECC-C------CCGGGT
T ss_pred CCCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeccccC--------------cccCccceEEEE-c------cChhhc
Confidence 3689999999999999999999999999999999987543 234566778888 4 998888
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
+++++.++|||+++|+++++++||+|||+++++++ ..++||++|++.+++..+++.+..+...+...++|+.+++.+++
T Consensus 60 ~~~~~~~~~d~~~~l~~~aa~~AL~dAGl~~~~id-~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (408)
T 1j3n_A 60 LDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLD-PERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIAN 138 (408)
T ss_dssp SCHHHHTTSCHHHHHHHHHHHHHHHHHTCCGGGSC-GGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTT
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHcCCCccccC-CCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhh
Confidence 99999999999999999999999999999988775 88999999999999988888888888888889999999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.++++|+..||++||+++|+++|+|++.||++|+++|++|++|++||||+|..+++.....|..++.++. +.+.|++.|
T Consensus 139 ~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~-~~~~p~~~~ 217 (408)
T 1j3n_A 139 MASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALST-RNEEPEKAS 217 (408)
T ss_dssp HHHHHHHHHHTCCSCBCCBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CTTCHHHHC
T ss_pred HHHHHHHHHhCCCCceeCccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhcccccC-CCCCCCcCc
Confidence 9999999999999999999999999999999999999999999999999998889998889998888874 234456789
Q ss_pred CCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+|||.+++|+++||||+++||+++++|+++|.++|++|.|++.++|+.+++.|++.+.++.++|++||++|
T Consensus 218 ~pfd~~~dg~v~geGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~A 288 (408)
T 1j3n_A 218 RPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDA 288 (408)
T ss_dssp CTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHH
T ss_pred ccCcCCCCceEEeeeEEEEEEeeHHHHHhCCCcEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999989999999999999976
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=383.25 Aligned_cols=294 Identities=51% Similarity=0.862 Sum_probs=266.0
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
.++|+|||||+++|+|.+.++||++|.+|++++++++.++ ...++.++++++++..+...||+.+|
T Consensus 20 ~~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~fd~~~~ 85 (438)
T 2iwz_A 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEE--------------YKSIPCSVAAYVPRGSDEGQFNEQNF 85 (438)
T ss_dssp ECCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCSGG--------------GTTSSCCEEECCCBSSSTTSBCGGGT
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCCchh--------------cccCccceeeeeccccccccCChhhc
Confidence 4579999999999999999999999999999999998644 23456677888874222355999888
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLP-SDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~-~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
+++++.+.|||+++|+++++++||+|||+++ ++++ ..++||++|++.+++..+++.+..+...+...++|+.+++.+.
T Consensus 86 ~~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~~i~-~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 164 (438)
T 2iwz_A 86 VSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEAD-QVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILV 164 (438)
T ss_dssp SCHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCSHHH-HHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCT
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHcCCCCccccc-CcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhh
Confidence 9999999999999999999999999999987 6553 6789999999999998888888888888888899999999999
Q ss_pred hHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCC
Q 018905 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (349)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (349)
+.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||||+|.++++..+..|..++.++.. ..|++.
T Consensus 165 ~~~a~~ia~~lgl~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~--~~p~~~ 242 (438)
T 2iwz_A 165 NMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTN--SDPKLA 242 (438)
T ss_dssp THHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC--SCTTTS
T ss_pred hHHHHHHHHHhCCCCceeeecCchhHHHHHHHHHHHHHHcCCCCEEEEEeeehhcCHHHHHHHHhcCCcCCC--CCCCcc
Confidence 999999999999999999999999999999999999999999999999999987889888889988888742 346789
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+|||.+++|+++||||+++||+++++|+++|.++|++|+|++.++|+.+++.|++.+.++.++|++||++|
T Consensus 243 ~~pfd~~~~G~~~geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~t~p~~~~~~~~~ai~~Al~~A 314 (438)
T 2iwz_A 243 CRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDA 314 (438)
T ss_dssp CCTTCTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCEEeeceEEEEEeccHHHHHhCCCceEEEEecceecCCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999988999999999999986
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=384.81 Aligned_cols=305 Identities=79% Similarity=1.253 Sum_probs=271.2
Q ss_pred ceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCCC
Q 018905 40 RVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLN 119 (349)
Q Consensus 40 ~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i~ 119 (349)
+|+|||||+++|+|.+.++||++|++|+++++++++++|....|+++........++.++++++++......||+.+|++
T Consensus 2 ~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~fd~~~~~~ 81 (431)
T 2ix4_A 2 RVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWLN 81 (431)
T ss_dssp CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHSC
T ss_pred cEEEEeeeEECCCCCCHHHHHHHHHcCCCeeeeCChhhhhccccccccccccccCcccceeEEeccccccccCChhhcCC
Confidence 69999999999999999999999999999999998766555566654332222356778899997321234599887777
Q ss_pred chhhhccCHHHHHHHHHHHHHHHHCCC-CCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhH
Q 018905 120 SKDHRSIARFIAYALCAADEALHDAKW-LPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (349)
Q Consensus 120 ~~~~~~~~~~~~l~~~a~~~Al~dAgi-~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
++ .|||+++|+++++++||+|||+ ++++++ ..++||++|++.+++..+++.+..+...++..+.|+.+++.+.++
T Consensus 82 ~~---~~d~~~~l~l~aa~~AL~dAG~~~~~~i~-~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 157 (431)
T 2ix4_A 82 SK---AVANFIGYAVCAADEALRDAEWLPTEEEE-KERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNM 157 (431)
T ss_dssp ST---TCCHHHHHHHHHHHHHHHHTTCCCCSHHH-HHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTH
T ss_pred hh---hCCHHHHHHHHHHHHHHHHcCCCCccccC-CCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcchhHH
Confidence 65 8999999999999999999999 776653 678999999999998888888888887888889999999999999
Q ss_pred HHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
++++|++.||++||+++|+++|+|++.||++|+++|++|++|++||||+|.++++.....|..++.++.+++.++++.++
T Consensus 158 ~a~~ia~~lgl~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~ 237 (431)
T 2ix4_A 158 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASR 237 (431)
T ss_dssp HHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCC
T ss_pred HHHHHHHHHCCCCceeCccChhHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccccCccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999988898888899999988766667788999
Q ss_pred CCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|||.+++|+++||||+++||+++++|+++|.++|++|.|++.++|+.+++.|++.+.++.+++++||++|
T Consensus 238 pfd~~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~a 307 (431)
T 2ix4_A 238 PFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQS 307 (431)
T ss_dssp TTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCceeecceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999888899999999999976
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=384.64 Aligned_cols=285 Identities=38% Similarity=0.576 Sum_probs=258.7
Q ss_pred CCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
+|++|+|||+|+++|.|.+.++||++|++|++++.+++.++ ...++.++++.+ . ||+.+
T Consensus 21 ~m~~V~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~g~~-~------fd~~~ 79 (428)
T 3mqd_A 21 SMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYA--------------ELGFRCQVHGAP-D------IDIES 79 (428)
T ss_dssp -CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHH--------------HTTCSCCEEECC-C------CCHHH
T ss_pred CCCCEEEEeeEEECCCcCCHHHHHHHHHcCCCcceeCCccc--------------ccCCCccccccc-C------CChhh
Confidence 46899999999999999999999999999999999998643 224455666663 3 99888
Q ss_pred CCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhh
Q 018905 117 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (349)
Q Consensus 117 ~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
|+++++.+.||++++|+++++++||+|||+++++++ ..++|||+|++.++.....++...+...++..++|+.+++.+.
T Consensus 80 ~i~~~~~~~~d~~~~l~~~aa~~Al~dAGl~~~~i~-~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (428)
T 3mqd_A 80 LVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEEEVS-NERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMS 158 (428)
T ss_dssp HSCTGGGTTCCHHHHHHHHHHHHHHHHHTCCHHHHS-STTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHHST
T ss_pred cCCHHHHhhCCHHHHHHHHHHHHHHHHcCCChhHcc-ccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccccc
Confidence 899999999999999999999999999999987775 8899999999988888788888888888889999999999999
Q ss_pred hHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCC
Q 018905 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (349)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (349)
+.++++|+..||++||+++|+++|+|++.||++|+++|++|++|++||||+|. +++.....|..++.++..+...|++.
T Consensus 159 ~~~a~~ia~~lgl~gp~~tv~~aCsSgl~Ai~~A~~~I~~G~~d~alvgG~e~-~s~~~~~~~~~~~~ls~~~~~~p~~~ 237 (428)
T 3mqd_A 159 STASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCED-LDWTLSVLFDAMGAMSSKYNDTPSTA 237 (428)
T ss_dssp THHHHHHHHHTTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCTTTTSGGGS
T ss_pred cHHHHHHHHHcCCCCceeeecCccHHHHHHHHHHHHHHHcCCCCEEEEEeecc-cchHHHHHHHHhhhhcccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999 66666667889998887656667889
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHH
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 346 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~ 346 (349)
|+|||.+++|+++||||+++||+++++|+++|.+||++|.|++.++|+.+++.| .+.++.++|++||+
T Consensus 238 ~rpfd~~~~G~v~gEGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~P--~~~~~~~ai~~Al~ 305 (428)
T 3mqd_A 238 SRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALS 305 (428)
T ss_dssp CCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSC--CSHHHHHHHHHHHT
T ss_pred cCcccCCCCCcccccceEEEEEccHHHHHhCCCcEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998887 57788999999985
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=382.96 Aligned_cols=289 Identities=31% Similarity=0.502 Sum_probs=256.4
Q ss_pred CCCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 37 PLRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 37 ~~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
|+++|+|||+|+++|+|.+.++||++|.+|++++.+++.++ ...++.++++.+ . ||+.+
T Consensus 1 M~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--------------~~~~~~~~~~~~-~------fd~~~ 59 (424)
T 1tqy_A 1 MKRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFD--------------PSPYRSQVAAEA-D------FDPVA 59 (424)
T ss_dssp --CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSC--------------CTTSSCCEEECC-C------CCHHH
T ss_pred CCCCEEEEeeEEECCCCCCHHHHHHHHHcCCCceeeCCCcc--------------cccCCcceeEEe-c------cCHhh
Confidence 45689999999999999999999999999999999987543 223455667777 4 99999
Q ss_pred C-CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHH--HhccCCCCCcchhh
Q 018905 117 W-LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMIC--EKRLRRLSPFFIPR 193 (349)
Q Consensus 117 ~-i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 193 (349)
| +++++.+.|||+++|+++++++||+|||+++++++ ..++||++|++.+++...++.+..+. ..+....+++.++.
T Consensus 60 ~~i~~~~~~~~d~~~~l~l~aa~~AL~dAG~~~~~i~-~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (424)
T 1tqy_A 60 EGFGPRELDRMDRASQFAVACAREAFAASGLDPDTLD-PARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRH 138 (424)
T ss_dssp HTCCHHHHHHSCHHHHHHHHHHHHHHHHHTCCTTTCC-GGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTT
T ss_pred cCCCHHHHHhcCHHHHHHHHHHHHHHHHCCCCchhcC-CCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhcc
Confidence 8 99999999999999999999999999999988875 88999999999999888888877776 45566677777666
Q ss_pred hhhhHHHH----HHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhcccccccc
Q 018905 194 ILINMASG----HVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKY 269 (349)
Q Consensus 194 ~~~~~~a~----~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~ 269 (349)
.++++.++ +|++.||++||+++|+++|+|++.||++|+++|++|++|++||||+|.++++..+..|..++.++.+
T Consensus 139 ~~~~~~a~~~~~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~- 217 (424)
T 1tqy_A 139 MFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR- 217 (424)
T ss_dssp THHHHSTTHHHHHHHHHHTCCSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-
T ss_pred cccccccchhHhHHHHhcCCCCceEeecCcccHHHHHHHHHHHHHHCCCCCEEEEeeecccCCHHHHHHHHhhccccCC-
Confidence 66665555 9999999999999999999999999999999999999999999999998889888889988888742
Q ss_pred CCCCCCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 270 NGTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 270 ~~~~~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
..+|++.|+|||.+++|+++||||+++||+++++|+++|.++|++|.|++.++|+.+++.|++++.++.++|++||++|
T Consensus 218 ~~~p~~~~rpfd~~~~G~v~geGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~g~~~~~ai~~al~~a 296 (424)
T 1tqy_A 218 NDDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDES 296 (424)
T ss_dssp CSCGGGCCCTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCCCCCCceeeecceeEEEeccHHHHHhCCCcEEEEEeeeEEcCCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 3346789999999999999999999999999999999999999999999999999999999999999999999999976
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=375.27 Aligned_cols=284 Identities=27% Similarity=0.403 Sum_probs=259.5
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
.++|+|||+|+++|.|.+.++||++|++|++++.++++++ . ..++.++++++++ ||+.+|
T Consensus 8 ~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~--~------------~~~~~~~~~~v~~------fd~~~~ 67 (415)
T 1tqy_B 8 DKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFD--V------------SRYPATLAGQIDD------FHAPDH 67 (415)
T ss_dssp --CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTT--G------------GGSSCCEEECCCS------CCHHHH
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcEEECCccc--c------------cCCCcceEEEeCC------CCchhc
Confidence 5679999999999999999999999999999999987533 2 2345677888876 998878
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
+++++.+.|||+++|+++++++||+|||+++++++ ..++||++|++.+++...++.+..+...+...++|+.+++...+
T Consensus 68 ~~~~~~~~~d~~~~l~l~aa~~AL~dAGl~~~~id-~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (415)
T 1tqy_B 68 IPGRLLPQTDPSTRLALTAADWALQDAKADPESLT-DYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYA 146 (415)
T ss_dssp SCTTTGGGCCHHHHHHHHHHHHHHHHTTCCGGGSC-GGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTT
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHcCCCccccC-CCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccch
Confidence 99999999999999999999999999999988775 88999999999999999999998888888889999999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.++++|+..||++||+++|+++|+|++.||++|+++|++| +|++||||+|.++++.....|..++.++. ++++++.|
T Consensus 147 ~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G-~d~~LvgG~e~~~~~~~~~~~~~~~~ls~--~~~~~~~~ 223 (415)
T 1tqy_B 147 VNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST--ATDPDRAY 223 (415)
T ss_dssp HHHHHHHHHHTCCSSCEEEECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC--CSCGGGSC
T ss_pred HHHHHHHHHhCCCCceEeecCCccHHHHHHHHHHHHHHcC-CCEEEEeeecCcCCHHHHHHHHhccCccC--CCCCCCCc
Confidence 9999999999999999999999999999999999999999 99999999999899999999999998884 23356799
Q ss_pred CCCCCCCCcceecceeeeEEeCChHHHHhcCC-eEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA-KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~-~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+|||.+++|+++||||+++||+++++|+++|. ++|++|.|++.++|+.+++.|++ ++.++|++||++|
T Consensus 224 ~pfd~~~~G~~~geGaaavvL~~~~~A~~~g~~~i~a~I~g~~~~~dg~~~~~p~~---~~~~ai~~al~~A 292 (415)
T 1tqy_B 224 LPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPA---GLERAIRLALNDA 292 (415)
T ss_dssp CTTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTCCCCC---SHHHHHHHHHHHH
T ss_pred CCCCCCCCCcceeeeEEEEEECcHHHHHHCCCCceEEEEEEEEEccCCCCCCCCCH---HHHHHHHHHHHHc
Confidence 99999999999999999999999999999999 99999999999999999998887 5589999999976
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-47 Score=365.70 Aligned_cols=288 Identities=33% Similarity=0.516 Sum_probs=258.3
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
+++|+|||+|+++|+|.+.++||++|++|+++++++++++++. ..++.++++++++ |+.+|
T Consensus 27 ~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~------------~~~~~~~~~~v~~-------d~~~~ 87 (434)
T 2gp6_A 27 FPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEE------------FDLPVRIGGHLLE-------EFDHQ 87 (434)
T ss_dssp SCCEEEEEEEEECSSCSSHHHHHHHHHTTCCCEEECCCHHHHH------------HCCSCCEEECCSC-------CSTTS
T ss_pred CCCEEEEeeEEeCCCCCCHHHHHHHHHcCCCeeeeCCcccccc------------ccCccceeEEcCC-------chhhh
Confidence 5689999999999999999999999999999999988533111 1345677888763 45556
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
+++++.+.|||+++|+++++++||+|||+ +++ +..++|||+|++.+++..+++.+..+...+...++|+.+++.+.+
T Consensus 88 ~~~~~~~~~d~~~~l~l~aa~~ALedAG~--~~~-~~~~igv~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 164 (434)
T 2gp6_A 88 LTRIELRRMGYLQRMSTVLSRRLWENAGS--PEV-DTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPN 164 (434)
T ss_dssp SCHHHHHTCCHHHHHHHHHHHHHHHHTTC--CCC-CTTSEEEEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHSTT
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHhcCC--Ccc-CCCceEEEEccccccHHHHHHHHHHHHhcCccccChhhhhccchh
Confidence 89999999999999999999999999999 334 388999999999999988888888888888888999999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhcc-ccccccCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSR-ALTTKYNGTPQEA 276 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 276 (349)
.++++|++.||++||+++|+++|+|++.||.+|+++|++|++|++||||+|.+..+..+..|..++ .++.. ...+++.
T Consensus 165 ~~a~~is~~lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~-~~~p~~~ 243 (434)
T 2gp6_A 165 GAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTN-NDDPAGA 243 (434)
T ss_dssp HHHHHHHHHSCCCSCEECEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEECCCCCHHHHHHHHTTTSSCCCC-TTCTTTS
T ss_pred hHHHHHhhhhcCCCCeEEeCCCCcHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHHHHHhcCC-CCCCCCc
Confidence 999999999999999999999999999999999999999999999999999988888888888888 55532 3457789
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+|||.+++|+++||||+++||+++++|+++|.++|++|.|++.++|+.+++.|++.+.++.+++++||++|
T Consensus 244 ~~pfd~~~~g~v~gdGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~Dg~~~~~p~~~~~~~~~ai~~al~~A 315 (434)
T 2gp6_A 244 CRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLA 315 (434)
T ss_dssp CCSSBTTCCCCCBBCCEEEEEEEEHHHHHTTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHT
T ss_pred eecccccCCCcceecceEEEEeCcHHHHHHCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999888899999999999986
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-47 Score=365.77 Aligned_cols=288 Identities=34% Similarity=0.529 Sum_probs=258.7
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
+++|+|||+|+++|+|.+.++||++|++|++++++++++++.. ..++.++++++++ |+.+|
T Consensus 11 ~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~------------~~~~~~~~~~~~~-------d~~~~ 71 (416)
T 2wge_A 11 FPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTK------------WDLAVKIGGHLKD-------PVDSH 71 (416)
T ss_dssp SCCEEEEEEEEEESSCSSHHHHHHHHHTTCCCCEECCCHHHHH------------HTCSCCEEBCCSS-------CGGGG
T ss_pred CCcEEEEeeEEECCCCCCHHHHHHHHHcCCCEEEeCCcccccc------------ccCCccEEEEeCC-------chhhh
Confidence 5689999999999999999999999999999999998533111 1345667777763 55566
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
+++++.+.|||+++|+++++++||+|||+ +++ +..++|||+|++.+++...++.+..+...++..+.|+.+++.+.+
T Consensus 72 ~~~~~~~~~d~~~~l~l~aa~~AL~dAG~--~~~-~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 148 (416)
T 2wge_A 72 MGRLDMRRMSYVQRMGKLLGGQLWESAGS--PEV-DPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPN 148 (416)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHTTC--CCC-CGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTT
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHcCC--Ccc-CCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccch
Confidence 99999999999999999999999999999 444 388999999999999988888888888888889999999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
..+++|++.||++||+++|+++|+|++.||++|+++|++|++|++||||+|.+..+.....|..++.++. +...++..|
T Consensus 149 ~~a~~ia~~lgl~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 227 (416)
T 2wge_A 149 GAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMST-RNDEPERAS 227 (416)
T ss_dssp HHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEECCCCCCHHHHHHHHTTTCBCC-CTTSGGGSC
T ss_pred hHHHHHHHHhccCCCcccccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecCccchHHHHHHHhcchhhc-cccCCcccc
Confidence 9999999999999999999999999999999999999999999999999999888888888888887764 234466899
Q ss_pred CCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+|||.+++|+++|||++++||+++++|+++|.++|++|.|++.++|+.+++.|++.+.++.+++++||++|
T Consensus 228 ~pfd~~~dg~v~geGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~a 298 (416)
T 2wge_A 228 RPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELA 298 (416)
T ss_dssp CTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHH
T ss_pred cccccCCCCccccCceEEEEECcHHHHHHCCCceEEEEEEEEEecCCCCccCCCCChHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999888899999999999986
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=389.91 Aligned_cols=280 Identities=22% Similarity=0.336 Sum_probs=247.8
Q ss_pred CceEEEeeceeCCCC-CCHHHHHHHHHcCCCceeeCCccc-cccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCC
Q 018905 39 RRVVVTGIGMVTPLG-CGAETTWRRLIVGECGIREITPED-LKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 116 (349)
Q Consensus 39 ~~v~ItG~g~~~p~g-~~~~~~~~~l~~g~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~ 116 (349)
++|+||||||++|+| .+.++||++|.+|++++++++..+ |.. ....++++++++ ...||+.+
T Consensus 39 ~~iaIvG~~~~~Pgg~~~~~~~w~~L~~g~~~i~~~p~~r~~~~-------------~~~~~~~~~l~~---~~~fD~~~ 102 (917)
T 2hg4_A 39 EPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWEP-------------DPDARLGGMLAA---AGDFDAGF 102 (917)
T ss_dssp CCEEEEEEEEEBTTTBCSHHHHHHHHHTTCCCCEECCGGGCCCC-------------CSSCCEEBCCTT---TTEECTGG
T ss_pred CCEEEEeceEECCCCCCCHHHHHHHHHcCCCccccCCcccccCC-------------CCCcceeeEecC---ccccChhh
Confidence 469999999999987 579999999999999999998766 521 122567888875 55699999
Q ss_pred C-CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhh
Q 018905 117 W-LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRIL 195 (349)
Q Consensus 117 ~-i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
| |++++.+.|||+++|+++++++||+|||+++++++ ..++|||+|++.+++... .......+.++.+++..
T Consensus 103 f~i~~~ea~~mdp~~rl~leaa~eALedAGi~~~~i~-~~~~gV~vG~~~~d~~~~-------~~~~~~~~~~~~~~g~~ 174 (917)
T 2hg4_A 103 FGISPREALAMDPQQRIMLEISWEALERAGHDPVSLR-GSATGVFTGVGTVDYGPR-------PDEAPDEVLGYVGTGTA 174 (917)
T ss_dssp GTCCHHHHHHSCHHHHHHHHHHHHHHHHTTCCGGGGT-TSCEEEEEEECCCCCSCC-------TTSSCGGGGGGHHHHHC
T ss_pred cCCCHHHHHhcCHHHHHHHHHHHHHHHHcCCChHHcC-CcceEEEEEeCCchhhhh-------hhcCccccCcccccccc
Confidence 9 99999999999999999999999999999988875 889999999987654321 11233455677788888
Q ss_pred hhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCC
Q 018905 196 INMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 275 (349)
Q Consensus 196 ~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (349)
.++++++|++.||++||+++|+++|+|++.||++|+++|++|+||++||||+|.+.++.....|..++.++ +++
T Consensus 175 ~~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGv~~~~~p~~~~~~~~~~~ls------~~g 248 (917)
T 2hg4_A 175 SSVASGRVAYCLGLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLA------ADG 248 (917)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSTHHHHHHTTSSCBC------TTS
T ss_pred cchHHHHHHHhcCCCCCeEeecCCcHHHHHHHHHHHHHHHcCCCCEEEEeEeccccChhhhHhhhhccCcC------Ccc
Confidence 89999999999999999999999999999999999999999999999999999988888888888888888 678
Q ss_pred CCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 276 ASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 276 ~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.|+|||.+++|+++|||++++||+++++|+++|++||++|+|++.++|+.+...+.|.+.++..+|++||++|
T Consensus 249 ~~~pFd~~adG~~~gEGagavVL~~l~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~P~~~~q~~ai~~Al~~A 321 (917)
T 2hg4_A 249 RCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENA 321 (917)
T ss_dssp CCCTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSSCCCHHHHHHHHHHHHHHH
T ss_pred ccCcccccccCCCCcceEEEEEEeeHHHHHhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999887666777888899999999976
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=383.76 Aligned_cols=291 Identities=19% Similarity=0.313 Sum_probs=255.2
Q ss_pred CCceEEEeeceeCCCC-CCHHHHHHHHHcCCCceeeCCccc-cccCCC-cchhhccccCCCcceEEEEecCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLG-CGAETTWRRLIVGECGIREITPED-LKMGNF-DRETQLHAFGQLTSKVAAVVPCGISSGEFNE 114 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g-~~~~~~~~~l~~g~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~ 114 (349)
.++|+||||||++|+| .+.++||++|.+|++++++++..+ |+.+.| +++... ....+.+.++++++ ...||+
T Consensus 5 ~~~iaIvG~~~~~P~g~~~~~~~w~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~--~~~~~~~~~~~l~~---~~~FD~ 79 (915)
T 2qo3_A 5 SDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPDN--PGTSYVDKGGFLDD---AAGFDA 79 (915)
T ss_dssp CCCEEEEEEEEECSTTCCSHHHHHHHHHTTCCCCEECCSSSCCCHHHHBCSCTTS--TTCBSCCEEBCCSC---SSEECH
T ss_pred CCCEEEEeeEEECCCCCCCHHHHHHHHHcCCCcccCCCccccCChhhccCccccc--CCCcccceeEEeCC---ccccCH
Confidence 3569999999999998 799999999999999999999877 765543 332221 22446678899975 566999
Q ss_pred CCC-CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhh
Q 018905 115 DSW-LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPR 193 (349)
Q Consensus 115 ~~~-i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
.+| |++++.+.|||+++|+++++++||+|||+++++++ ..++|||+|++.+++.... .....+.++.+++
T Consensus 80 ~~f~i~~~ea~~mdp~~rL~leaa~eALedAGi~~~~i~-~~~~gV~vG~~~~~~~~~~--------~~~~~~~~~~~~g 150 (915)
T 2qo3_A 80 EFFGVSPREAAAMDPQQRLLLETSWELVENAGIDPHSLR-GTATGVFLGVAKFGYGEDT--------AAAEDVEGYSVTG 150 (915)
T ss_dssp HHHTCCHHHHHTSCHHHHHHHHHHHHHHHHTTCCGGGGT-TBCCEEEEECCCCCTTTTC--------C---CTTCHHHHT
T ss_pred hhcCCCHHHHHhCCHHHHHHHHHHHHHHHHcCCChHHcC-CcceEEEEEecCchHHhhh--------ccccccccccccc
Confidence 999 99999999999999999999999999999988875 8899999999877654221 1223567788888
Q ss_pred hhhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCC
Q 018905 194 ILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 273 (349)
Q Consensus 194 ~~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (349)
...++++++|++.||++||+++|+++|+|++.||++|+++|++|+||++||||+|.+.++.....|..++.++ +
T Consensus 151 ~~~~~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~ls------~ 224 (915)
T 2qo3_A 151 VAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALA------A 224 (915)
T ss_dssp TCHHHHHHHHHHHHTBCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSSEEEEEEECCSSTHHHHHHHTTTCBC------S
T ss_pred ccccHHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHHHHHcCCCCEEEEeEehhhcCHHHHHHHhhhcccC------C
Confidence 8899999999999999999999999999999999999999999999999999999988998888899988888 6
Q ss_pred CCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 274 QEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 274 ~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
++.|+|||.+++|+++|||++++||+++++|+++|++||++|+|++.++|+.+...+.|.+.++.++|++||++|
T Consensus 225 ~g~~~~Fd~~adG~v~gEGagavVL~~~~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~p~~~~~~~~i~~Al~~A 299 (915)
T 2qo3_A 225 DGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESC 299 (915)
T ss_dssp SCCCCTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSTTCCCHHHHHHHHHHHHHHT
T ss_pred CCCcccccCCCCceeecCceEEEEEeEhHHhhhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999999999999999999999999999887767777888999999999986
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=374.41 Aligned_cols=278 Identities=19% Similarity=0.281 Sum_probs=242.5
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
+++|+||||||++|+|.+.++||++|.+|++++++.+ .+|+.+.|+. ....|.+++ ...||+.+|
T Consensus 3 ~~~IaIvGmg~r~P~~~~~~~~W~~l~~g~~~~~~~~-~~~~~~~~~~-----------~~~~g~~~~---~~~FD~~~f 67 (965)
T 3hhd_A 3 GEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDD-RRWKAGLYGL-----------PRRSGKLKD---LSRFDASFF 67 (965)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEECSS-SSSCTTGGGC-----------CSCEECCSC---SSCCCTTTT
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCcccCCC-cccccccccC-----------cccccccCC---hhhcChhhc
Confidence 5679999999999999999999999999999999865 4565443311 123455654 566999999
Q ss_pred -CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhh
Q 018905 118 -LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (349)
Q Consensus 118 -i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
|++++.+.|||+++|+++++++||+|||+++++++ ..++|||+|++.+++. .....++..+.++.+++...
T Consensus 68 ~i~~~ea~~mDp~~rL~leaa~eALedAGi~~~~i~-~~~~Gv~vG~~~~d~~-------~~~~~~~~~~~~~~~~g~~~ 139 (965)
T 3hhd_A 68 GVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPDSLR-GTHTGVWVGVSGSETS-------EALSRDPETLVGYSMVGCQR 139 (965)
T ss_dssp TCCHHHHHTSCHHHHHHHHHHHHHHHHTTCCGGGGT-TSCCEEEEEECCCHHH-------HHHTSCTTTCCTHHHHHHST
T ss_pred CCCHHHHhhcCHHHHHHHHHHHHHHHHcCCChHHcC-CceeEEEEeccchhHH-------HHHhcCccccCccccccccc
Confidence 99999999999999999999999999999998885 8999999998765432 23345666788888999999
Q ss_pred hHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCC
Q 018905 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (349)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (349)
++++++|++.||++||+++|+++|+|++.||++|+++|++|+||++||||+|.++++.....|..++.++ +++.
T Consensus 140 ~~~a~ris~~lgl~GPs~tvdtACSSsl~Al~~A~~~I~~G~~d~aLagGv~~~~~p~~~~~~~~~~~ls------~~g~ 213 (965)
T 3hhd_A 140 AMMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS------PEGT 213 (965)
T ss_dssp THHHHHHHHHHTCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCCHHHHHHHHHHTCBC------TTCC
T ss_pred chHHHHHHHHhCCCCCeeeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCcC------CCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 7799
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCC-CCCCCCCcHHHHHHHHHHHHHh
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH-ITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~-~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+|||.+++|+++|||++++||++.++|+ +||++|+|++.++|+.+ .....|++.++.++|++||++|
T Consensus 214 ~~~Fd~~adG~~~gEGagavvL~~l~~A~----~i~a~I~g~~~n~dg~~~~~~t~P~~~~q~~~i~~Al~~A 282 (965)
T 3hhd_A 214 CKAFDTAGNGYCRSEGVVAVLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSA 282 (965)
T ss_dssp CCTTBTTCCSBCBBCEEEEEEEEEGGGCS----SCSEEEEEEEEEECCCCTTCTTSCCHHHHHHHHHHHHHHT
T ss_pred cccchhccCCccccceEEEEEEecHHHcC----cccEEEEeeeccCCCCCCCCCcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999885 58999999999999975 2223345778899999999986
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=399.22 Aligned_cols=276 Identities=21% Similarity=0.298 Sum_probs=242.9
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|++|+||||||++|+|.+.++||++|.+|++++++.+ .+|+.+.|+ ....+|.+++ ...||+.+|
T Consensus 1 m~~iaI~G~~~~~p~~~~~~~~w~~l~~g~~~~~~~~-~~~~~~~~~-----------~~~~~g~~~~---~~~fd~~~f 65 (2512)
T 2vz8_A 1 MEEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADD-RRWKAGLYG-----------LPRRMGKLKD---LSRFDASFF 65 (2512)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECS-SSSCTTGGG-----------CCSEEECCSC---SSCCCTTTT
T ss_pred CCCEEEEeeeeeCCCCCCHHHHHHHHHcCCccccCCC-ccccccccc-----------CcccceecCC---cccCCHhhc
Confidence 4679999999999999999999999999999999854 456544221 1234676765 566999999
Q ss_pred -CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhh
Q 018905 118 -LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILI 196 (349)
Q Consensus 118 -i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
|++++.+.|||+++|+++++++||+|||+.+..+. ..++|||+|++.+++.. ....++..+.++.+.+...
T Consensus 66 ~i~~~ea~~~dpq~rl~l~~~~eAle~Ag~~~~~~~-~~~~gv~~G~~~~~~~~-------~~~~~~~~~~~~~~~g~~~ 137 (2512)
T 2vz8_A 66 GVHSKQANTMDPQLRMLLEVTYEAIVDGGINPASLR-GTSTGVWVGVSSSDASE-------ALSRDPETLVGYSMIGCQR 137 (2512)
T ss_dssp TCCHHHHHTSCHHHHHHHHHHHHHHGGGTCCGGGGT-TCSCEEEEEECCCHHHH-------HTTSCTTTSCGGGGGGTST
T ss_pred CCCHHHHHhcCHHHHHHHHHHHHHHHHCCCChhhcC-CCCeEEEEEeccHHHHH-------HHhcCccccCcceecccch
Confidence 99999999999999999999999999999887764 88999999997654322 2234556678889999999
Q ss_pred hHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCC
Q 018905 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (349)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (349)
++++++||+.||++||+++|+++|+||+.||++|+++|++|+||++||||++.+++|.....|..++.++ +++.
T Consensus 138 ~~~a~ris~~~~l~Gps~tv~tACsSsl~Al~~A~~~l~~g~~d~al~gG~~~~~~p~~~~~~~~~~~ls------~~g~ 211 (2512)
T 2vz8_A 138 AMMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLS------QDGT 211 (2512)
T ss_dssp THHHHHHHHHHTCCSCEEEEECTTSTHHHHHHHHHHHHHTSSCSEEEEEEEECCCCHHHHHHHHHTTCBC------TTCS
T ss_pred hHHHHHHHHHhCCCCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeEeccccCHHHHHHHccCCCCC------CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 7799
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCC---CCCCCCCcHHHHHHHHHHHHHh
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHH---ITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~---~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+|||.+++|+++|||++++||++.++|+ +|||+|+|++.++|+++ ++.| ++.++.++|++||++|
T Consensus 212 c~~Fd~~adG~~~gEG~~~~vLk~l~~A~----~i~a~i~g~~~n~dg~~~~~~t~P--~~~~q~~~i~~al~~a 280 (2512)
T 2vz8_A 212 CRSFDAEGTGYCRAEAVVAVLLTKKSLAR----RVYATILNAGTNTDGSKEQGVTFP--SGDVQEQLIRSLYAPA 280 (2512)
T ss_dssp CCSSSTTCCCBCBBCEEEEEEEEEGGGCS----CCSEEEEEEEEEECCCCTTCSSSC--CHHHHHHHHHTTSGGG
T ss_pred CCCCCCCCCCcceeeeEEEEEEEEHHHCC----cccEEEEEEEEcCCCCCCCCCCCC--CHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999985 59999999999999963 5655 5778899999999876
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=328.74 Aligned_cols=253 Identities=22% Similarity=0.274 Sum_probs=221.1
Q ss_pred CCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC-CCchhhhccCHHHH
Q 018905 53 GCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-LNSKDHRSIARFIA 131 (349)
Q Consensus 53 g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~-i~~~~~~~~~~~~~ 131 (349)
..+.++||..|.+|++++.+... .++..++|+|+. .||+.+| |++++.+.|||+++
T Consensus 1132 ~~~~~~~w~~L~~G~~~i~p~~~------------------~~~~~~aG~i~~-----~FD~~~fgI~~~ea~~mDp~~~ 1188 (1878)
T 2uv9_A 1132 IPETGQYTVRLRKGATLLIPKAL------------------QFDRLVAGQIPT-----GWDARRYGVPEDIIQQVDPVTL 1188 (1878)
T ss_dssp CTTTSCEEEEECTTCEEEEEEEE------------------CCSCCEEEECCT-----TCCHHHHTCCHHHHHHSCHHHH
T ss_pred CCChHHHHHHHHcCCCeeeecCC------------------CCcceEEEEeCC-----CCCHhhcCCCHHHHHhcCHHHH
Confidence 35668999999999999887321 345678999974 3999999 99999999999999
Q ss_pred HHHHHHHHHHHHCCCC-CCC----CCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHH-
Q 018905 132 YALCAADEALHDAKWL-PSD----QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM- 205 (349)
Q Consensus 132 l~~~a~~~Al~dAgi~-~~~----~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~- 205 (349)
|++.++.+||++|||+ +.+ + +..++|+++|++.+++..+...+...+.. ..+.++.+++.+.|.++++|++
T Consensus 1189 l~L~aa~eAL~~AGi~~p~e~~~~i-~~s~vGv~vGsg~gg~~~~~~~~~~~~~~--~~v~~~~~~~~~~n~~aa~vs~~ 1265 (1878)
T 2uv9_A 1189 YVLVSVAEALLSSGITDPYEFYKYV-HLSEVGNCIGSGVGGTSALRGMYKDRYLD--KPVQKDILQESFVNTMAAWVNML 1265 (1878)
T ss_dssp HHHHHHHHHHHTTTCSSGGGHHHHS-CGGGEEEEEEESSCCHHHHHHHHTTTTTT--CCCCSCTTGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCChhhhhccc-CccceEEEEccCCccHHHHHHHHHHHHhc--CCCCchhhhcchHHHHHHHHHHH
Confidence 9999999999999998 555 4 38899999999999988776655543322 2477888999999999999999
Q ss_pred HcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccc-----cCCCCCCCCCCC
Q 018905 206 KYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-----YNGTPQEASRPF 280 (349)
Q Consensus 206 ~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~pf 280 (349)
.||++||+++|+++|+|++.||++|++.|++|+||++||||+|. +++.....|..++.++.. ....|++.||||
T Consensus 1266 ~lg~~GP~~tv~tACASsl~Al~~A~~~I~sG~advalvGGvd~-~~~~~~~~f~~m~als~~~de~a~g~~p~~~~RPf 1344 (1878)
T 2uv9_A 1266 LLSSTGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDD-FQEEGSYEFANMGATSNAKEEFARGREPGEMSRPT 1344 (1878)
T ss_dssp TCCCCCCBCCBCCGGGHHHHHHHHHHHHHTTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHTTTCCTTSSCCSS
T ss_pred hcCCCCCeEEEcCcchHHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhhcCCCcccCcCCC
Confidence 59999999999999999999999999999999999999999998 788888899999998842 234588999999
Q ss_pred CCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCC
Q 018905 281 DCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332 (349)
Q Consensus 281 ~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~ 332 (349)
+.+++||++|||++++||++.++|+++|.+||++|.|+++++|+.+.+.|.|
T Consensus 1345 d~~r~Gfv~gEGag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paP 1396 (1878)
T 2uv9_A 1345 STTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAP 1396 (1878)
T ss_dssp BTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCSSCC
T ss_pred ccCCCCCcccceeEEEEEeeHHHHHHCCCceEEEEEEEEEecCCCccCCCCC
Confidence 9999999999999999999999999999999999999999999987655554
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=325.00 Aligned_cols=252 Identities=21% Similarity=0.293 Sum_probs=219.2
Q ss_pred CCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC-CCchhhhccCHHHHH
Q 018905 54 CGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-LNSKDHRSIARFIAY 132 (349)
Q Consensus 54 ~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~-i~~~~~~~~~~~~~l 132 (349)
.+.++||..|.+|.+++.+... .++..++|+|+. .||+.+| |++++.+.|||+++|
T Consensus 1158 ~~~~~~w~~L~~G~~~i~p~~~------------------~~~~~~aG~i~~-----~FD~~~fgI~~~ea~~mDp~~~l 1214 (1887)
T 2uv8_A 1158 PETGEYSVKLLKGATLYIPKAL------------------RFDRLVAGQIPT-----GWNAKTYGISDDIISQVDPITLF 1214 (1887)
T ss_dssp TTTSCEEEEECTTCEEEEEEEE------------------CCSCCEEECCCT-----TCCTTTTTCCHHHHHHSCHHHHH
T ss_pred CchHHHHHHHHcCCceeecccC------------------CCCccEEEEECC-----CCChhhcCCCHHHHHhcCHHHHH
Confidence 3578899999999999887422 345678999974 3999999 999999999999999
Q ss_pred HHHHHHHHHHHCCCC-CCC----CCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH-
Q 018905 133 ALCAADEALHDAKWL-PSD----QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK- 206 (349)
Q Consensus 133 ~~~a~~~Al~dAgi~-~~~----~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~- 206 (349)
+++++.+||+||||+ +.+ + +..++||++|++.+++......+...+.. ..+.++.++..+.|.++++|++.
T Consensus 1215 ~L~aa~eAL~dAGi~dp~e~~~~i-~~s~vGv~vGs~~gg~~~~~~~~~~~~~~--~~v~~~~~~~~~~n~~aa~is~~~ 1291 (1887)
T 2uv8_A 1215 VLVSVVEAFIASGITDPYEMYKYV-HVSEVGNCSGSGMGGVSALRGMFKDRFKD--EPVQNDILQESFINTMSAWVNMLL 1291 (1887)
T ss_dssp HHHHHHHHHHHTTCSSGGGHHHHS-CGGGEEECCEESSCCHHHHHHHHTTTTTT--CCCCTTHHHHHSTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCChhhhhccc-CCceeEEEeccCCccHHHHHHHHHHHHhc--CCCCcchhhcchhhHHHHHHHHHH
Confidence 999999999999995 555 4 38899999999999988776655543322 34778888999999999999995
Q ss_pred cCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccc-----cCCCCCCCCCCCC
Q 018905 207 YGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-----YNGTPQEASRPFD 281 (349)
Q Consensus 207 lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~pf~ 281 (349)
||++||+++|+++|+|++.||++|++.|++|+||++||||+|. +++.....|..++.++.. ....|++.|+||+
T Consensus 1292 lgl~GP~~tv~tACASsl~Al~~A~~~I~sG~advaLvGGvd~-~~~~~~~~f~~m~als~~~~e~~~g~~p~~~~RPfd 1370 (1887)
T 2uv8_A 1292 ISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPAT 1370 (1887)
T ss_dssp TCCCSCCCCCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCHHHHHHTTCCGGGSCCTTB
T ss_pred cCCccceEEeecccccHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhcccCCCccCcCCCc
Confidence 9999999999999999999999999999999999999999998 788888899999998842 1345778999999
Q ss_pred CCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCC
Q 018905 282 CGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 332 (349)
Q Consensus 282 ~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~ 332 (349)
.+++||++|||++++||++.++|+++|.+||++|.|+++++|+.+.+.|.|
T Consensus 1371 ~~r~Gfv~gEGag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paP 1421 (1887)
T 2uv8_A 1371 TTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP 1421 (1887)
T ss_dssp TTCCSBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCTTCC
T ss_pred ccCCCcccccceEEEEEccHHHHHHCCCceEEEEeeeEEecCCccccCCCC
Confidence 999999999999999999999999999999999999999999987654444
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=322.93 Aligned_cols=249 Identities=21% Similarity=0.305 Sum_probs=213.9
Q ss_pred CHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC-CCchhhhccCHHHHHH
Q 018905 55 GAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-LNSKDHRSIARFIAYA 133 (349)
Q Consensus 55 ~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~-i~~~~~~~~~~~~~l~ 133 (349)
+.++||..|.+|++.+.+... .++..++|+|++ .||+.+| |+++..+.|||+++|+
T Consensus 960 ~~eefW~~L~~G~~~i~p~~~------------------~~~~~vaG~Ip~-----gFD~~~fGIs~~ea~~mDP~qrLa 1016 (1688)
T 2pff_A 960 ETGEYSVKLLKGATLYIPKAL------------------RFDRLVAGQIPT-----GWNAKTYGISDDIISQVDPITLFV 1016 (1688)
T ss_dssp CCCSSSCCCCCCTTCCCCCCC------------------CEECCSSCSCCC-----CCCCCCSSCCTTTBTTBCSSTTHH
T ss_pred CHHHHHHHHHcCCCEEecCCC------------------CCCceEEEEECC-----CCChhhCCCCHHHHhccCHHHHHH
Confidence 568899999999998887321 344566788873 3999999 9999999999999999
Q ss_pred HHHHHHHHHHCCCC-CCC----CCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHH-Hc
Q 018905 134 LCAADEALHDAKWL-PSD----QGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM-KY 207 (349)
Q Consensus 134 ~~a~~~Al~dAgi~-~~~----~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~-~l 207 (349)
++++.+||++|||+ +.+ + +..++||++|++.+++......+...+.. ..+.+..++..+.|.++++++. .|
T Consensus 1017 LeAa~EALedAGI~dP~ei~~~i-~~s~vGV~vGSg~Gg~~~l~~~~~~~~~~--~~v~~~~l~~~~~nt~Aa~Vs~~~L 1093 (1688)
T 2pff_A 1017 LVSVVEAFIASGITDPYEMYKYV-HVSEVGNCSGSGMGGVSALRGMFKDRFKD--EPVQNDILQESFINTMSAWVNMLLI 1093 (1688)
T ss_dssp HHHHHHHHTTTTCSSGGGGGGGT-CCSCSCCCCCCCSCCCSSHHHHHHSSSSC--CCCCSTTHHHHCTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHcCCCChHHhcccc-CCceEEEEecccCCCHHHHHHHHHHHHhc--CCCCcchhccccHHHHHHHHHHHHc
Confidence 99999999999998 555 4 38899999999999887666655433222 3477888899999999999999 79
Q ss_pred CCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccc-----cCCCCCCCCCCCCC
Q 018905 208 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-----YNGTPQEASRPFDC 282 (349)
Q Consensus 208 gl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~pf~~ 282 (349)
|++||+++|+++|+|++.||++|++.|++|+||++||||+|. +++.....|..++.++.. ....|++.|+||+.
T Consensus 1094 Gl~GPs~TVdtACASSL~AL~lA~~aIrsGeaDvaLVGGvE~-msp~~~~~Fa~mgaLS~~~~e~a~G~~Pd~~cRPFd~ 1172 (1688)
T 2pff_A 1094 SSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATT 1172 (1688)
T ss_dssp CCCCCCCCCCCTTTTTHHHHHHHHHHHHTTTCSCBCCCCCCC-CCTTTTTTTTTTSCSCCTTTTTTSSCCSSSSCCSSSS
T ss_pred CCcCCeEEecCCCchHHHHHHHHHHHHHCCCCCEEEEeeecc-CCHHHHHHHHhccccccChhhhhcCCChhhccCcCcc
Confidence 999999999999999999999999999999999999999998 577777778888888742 23457899999999
Q ss_pred CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCC
Q 018905 283 GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 330 (349)
Q Consensus 283 ~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p 330 (349)
+++|+++||||+++||++.++|+++|.+||++|.|+++++|+.+.+.|
T Consensus 1173 ~rdGfv~GEGAGavVLesle~Al~~G~~IyAvI~GsavnsDg~~~Sip 1220 (1688)
T 2pff_A 1173 TRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVP 1220 (1688)
T ss_dssp SCCCCCCCSCCEEEEEECSHHHHSSSCCCCCEECCCCCCCCCCCSSSC
T ss_pred CCCCCccccceEEEEeCcHHHHHHCCCceEEEEEEEEEECCCCccCCC
Confidence 999999999999999999999999999999999999999998865433
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=319.41 Aligned_cols=287 Identities=21% Similarity=0.285 Sum_probs=233.4
Q ss_pred CCHHHHHHHHHcCCC--ceeeCCc-cccccCCC-cchhhccccCCCcceEEEEecCCCCCCCCCCCCC-CCchhhhccCH
Q 018905 54 CGAETTWRRLIVGEC--GIREITP-EDLKMGNF-DRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW-LNSKDHRSIAR 128 (349)
Q Consensus 54 ~~~~~~~~~l~~g~~--~i~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~-i~~~~~~~~~~ 128 (349)
.+.++.|+-..++.+ .+.+.+. .+|+...+ .......+...++.+++|+|++ .||+.+| |++++.+.|||
T Consensus 2572 ~s~~~a~~~~~~~~~~~~i~~~~~~~~W~~~~~~~~~i~~p~~~~~~~~~gG~i~d-----~FD~~~fgIs~rea~~mDp 2646 (3089)
T 3zen_D 2572 SSEADARAFVQFDPEHTVARPLPDSSDWEVTRKAGTEIRVPRKTKLSRTVGAQIPT-----GFDPTVWGISPDMASSIDR 2646 (3089)
T ss_dssp ECHHHHHHHHTTSTTSEEEEECTTTCCEEEEECTTCEEEEEEEECCSCCEEECCCT-----TCCTTTTTCCHHHHHHSCH
T ss_pred CCHHHHHHHHHhCCCcceEEeCCCCcceeeeecCCCCcCCCCcCCccceEEEEcCC-----CCChhhcCCCHHHHHhcCH
Confidence 366777777766544 3455554 45755433 2221111123467788999964 3999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC---CCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHH
Q 018905 129 FIAYALCAADEALHDAKWLPSDQG---QKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSM 205 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~---~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~ 205 (349)
+++|+++++++||+|||+++++++ +..++|||+|++.++.......+..++. +..... ..++..+.|..+++++.
T Consensus 2647 ~~rL~l~aa~eALedAGi~p~~l~~~~~~~~vGV~vG~~~gg~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~aa~is~ 2724 (3089)
T 3zen_D 2647 VALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLL-GRAKPN-DILQEVLPNVVAAHVMQ 2724 (3089)
T ss_dssp HHHHHHHHHHHHHTTSCSCGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHHHHHT-TCCCCT-THHHHTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhhcccCcceeEEEEeecCccHHHHHHHHHHHhc-CCCccc-hhhccccccHHHHHHHH
Confidence 999999999999999999987652 4789999999999998888777776654 332333 35677788999999997
Q ss_pred H-cCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhcccccc-----ccCCCCCCCCCC
Q 018905 206 K-YGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT-----KYNGTPQEASRP 279 (349)
Q Consensus 206 ~-lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~p 279 (349)
. ||++||+++|+++|+||+.||++|+++|++|+||++||||+|. +++..+..|..++.++. .....+++.|+|
T Consensus 2725 ~~lGl~GPs~tV~tACSSsl~Al~~A~~~IrsG~~d~aLaGGve~-ls~~~~~~f~~~~als~~~~~~~~~~sp~~~crp 2803 (3089)
T 3zen_D 2725 SYVGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDD-LTLEAIIGFGDMAATADTEMMRAKGISDSKFSRA 2803 (3089)
T ss_dssp HTTCCCSCEECCBCTTCHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHHTTCCTTTSCCS
T ss_pred HHcCCCCCceeeccchhhHHHHHHHHHHHHHCCCCCeeEEeeecc-cCHHHHHHHHHhhhhhcchhhhhccCCcccccCc
Confidence 5 5999999999999999999999999999999999999999999 89988889999888763 124557899999
Q ss_pred CCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCc-------HHHHHHHHHHHHHh
Q 018905 280 FDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDG-------KGAILAMTRALKQA 348 (349)
Q Consensus 280 f~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g-------~~~~~a~~~Al~~A 348 (349)
||.+++|+++||||+++||+++++|+++|++||++|.+.+.++|+.+.+.|.|.. .++.++|++||++|
T Consensus 2804 Fd~~~dG~v~GEGAgavVL~~~e~A~~~G~~I~avI~g~~~n~Dg~~~~~~aP~~g~~~a~~~~q~~ai~~AL~~A 2879 (3089)
T 3zen_D 2804 NDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIPAPGLGALGAARGGRESTLARSLAQL 2879 (3089)
T ss_dssp SBTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCCCCCSSCCCCGGGGGSTTGGGSHHHHHHHTT
T ss_pred cccCCCCEEEeccceEEEEeeHHHHHhCCCceEEEEEEEEEecCCcccCccCCchhHHhHhhhhHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999877666641 24567899999875
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-23 Score=194.64 Aligned_cols=184 Identities=26% Similarity=0.390 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..+|+++++++||+|||+++++++ ++++|+..+... ...++.+++..+|
T Consensus 30 ~~~L~~~a~~~Al~dAGl~~~~id-----~v~~g~~~~~~~--------------------------~~~~a~~ia~~lg 78 (397)
T 1wl4_A 30 VQDLGSTVIKEVLKRATVAPEDVS-----EVIFGHVLAAGC--------------------------GQNPVRQASVGAG 78 (397)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCTTS--------------------------CSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCCC--------------------------CCHHHHHHHHHcC
Confidence 478999999999999999988776 899998654321 1246788999999
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHHH--------------H-----H----H--H
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALSM--------------A-----G----F--C 260 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~~--------------~-----~----~--~ 260 (349)
+ +||+++|+++|+|++.||.+|+++|++|++|++||+|+|.+.. +... . + | .
T Consensus 79 l~~~~p~~~v~~aCaSg~~Ai~~A~~~I~~G~~d~vlagG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 158 (397)
T 1wl4_A 79 IPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC 158 (397)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESTTCCEECCCSSCCSSSCCCCEEHHHHHTTBCTTTCC
T ss_pred CCCCccEEEecCcChhHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccccccCcccccchhccccccCccccc
Confidence 9 8999999999999999999999999999999999999998542 2100 0 0 0 0
Q ss_pred hcccccc-------------------------------ccCC----------------CCCC------------CCCC-C
Q 018905 261 KSRALTT-------------------------------KYNG----------------TPQE------------ASRP-F 280 (349)
Q Consensus 261 ~~~~l~~-------------------------------~~~~----------------~~~~------------~~~p-f 280 (349)
.++.+++ .+.+ ++++ .++| |
T Consensus 159 ~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf 238 (397)
T 1wl4_A 159 HMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYF 238 (397)
T ss_dssp BHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHHTSCCSS
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCcccceeeeeeccCCCceeeccccccCCCCCHHHHhcCCCcc
Confidence 0111110 0000 0111 4889 9
Q ss_pred CCCCCcce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 281 DCGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 281 ~~~~~G~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+.+++|++ ++|||+++||+++++|+++|.+|+++|.|++.+++ .|++.+.++..++++||++|
T Consensus 239 d~~~~G~vt~~~~s~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~A 308 (397)
T 1wl4_A 239 LTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGV-----EPSIMGIGPIPAIKQAVTKA 308 (397)
T ss_dssp CCSSCCCCCTTSBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHH
T ss_pred CCCCCCCEechhcCCccchhheeeEecHHHHHHcCCCccEEEEEEEEeec-----ChhhccchHHHHHHHHHHHc
Confidence 99999999 99999999999999999999999999999999885 56666778899999999986
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-23 Score=198.34 Aligned_cols=185 Identities=21% Similarity=0.295 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHC-CCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALHDA-KWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dA-gi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
..+|+++++++||+|+ |+++++++ ++++|+..+... ..+.++.+|+..|
T Consensus 30 ~~~L~~~a~~~AL~dA~gl~~~~id-----~v~~g~~~~~~~-------------------------~~~~~a~~ia~~l 79 (390)
T 1wdk_C 30 AEDMSAHLISKVLERNSKVDPGEVE-----DVIWGCVNQTLE-------------------------QGWNIARMASLMT 79 (390)
T ss_dssp HHHHHHHHHHHHHHHCTTSCGGGEE-----EEEEECSSBSBT-------------------------TTTTHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCC-----EEEEEeeccccC-------------------------CCCcHHHHHHHHc
Confidence 5789999999999999 99887766 899998654321 0135788999999
Q ss_pred CC--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHHHH-----HHH--------hccc-------
Q 018905 208 GF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALSMA-----GFC--------KSRA------- 264 (349)
Q Consensus 208 gl--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~~~-----~~~--------~~~~------- 264 (349)
|+ ++|+++|+++|+|++.||.+|+++|++|++|++||+|+|.+.. +.... .+. .++.
T Consensus 80 gl~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~ 159 (390)
T 1wdk_C 80 QIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGK 159 (390)
T ss_dssp SSCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCTTTTBCCCGGGGGTSCGGGGSHHHHHHHHHH
T ss_pred CCCCCccEEEEcccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccccCCcccccccCccccccCCcchhHHHHHHHHHHH
Confidence 99 8999999999999999999999999999999999999997432 21100 000 0111
Q ss_pred ---cccc---------------------cCCC--C------CCCCCCCCCC---------------------CCcce---
Q 018905 265 ---LTTK---------------------YNGT--P------QEASRPFDCG---------------------RDGFV--- 288 (349)
Q Consensus 265 ---l~~~---------------------~~~~--~------~~~~~pf~~~---------------------~~G~~--- 288 (349)
++.. +.++ | .+.++|||.+ ++|++
T Consensus 160 ~~g~s~e~~~~~a~~s~~~a~~a~~~g~~~~ei~p~~~~~~~~~~~~fd~d~~~r~~~t~e~~~~~~~i~~p~~G~vt~~ 239 (390)
T 1wdk_C 160 MHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAG 239 (390)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEECTTCCEEEECSCTTCCTTCCHHHHHTSCCSSCTTTCCCCGG
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeeccCCCcceeeccccccCCCCCHHHHhcCCCcccCCCCcEech
Confidence 1110 0000 1 1122689988 79999
Q ss_pred ----ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 289 ----IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 289 ----~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
++|||+++||+++++|+++|.+|+++|.|++.+++ .|++.+.++..++++||++|
T Consensus 240 ~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~A 298 (390)
T 1wdk_C 240 TSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGV-----DPAIMGYGPVPATQKALKRA 298 (390)
T ss_dssp GBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHH
T ss_pred hcCcccchhheeEEecHHHHHHcCCCccEEEEEEEEecc-----ChhhcchhHHHHHHHHHHHc
Confidence 99999999999999999999999999999999875 45555677799999999986
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=191.08 Aligned_cols=184 Identities=22% Similarity=0.303 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..+|+++++++||+|||+++++++ +|++|+..++.. ....+..++..+|
T Consensus 55 ~~~L~~~Aa~~AL~dAgl~~~~id-----~v~~g~~~~~~~--------------------------~~~~a~~~a~~lG 103 (418)
T 2iik_A 55 PDELLSAVMTAVLKDVNLRPEQLG-----DICVGNVLQPGA--------------------------GAIMARIAQFLSD 103 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----CEEEECSSSBGG--------------------------GHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCccc--------------------------cccHHHHHHHHcC
Confidence 588999999999999999988886 799998654321 1345666788899
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChH------------------------HHHHHHh-
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL------------------------SMAGFCK- 261 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~------------------------~~~~~~~- 261 (349)
+ ++|+++|+++|+|++.||..|+++|++|++|++||+|+|.+.... .......
T Consensus 104 l~~~~p~~~v~~aCss~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~a 183 (418)
T 2iik_A 104 IPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENVA 183 (418)
T ss_dssp CCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTCC-----CCCTTGGGCHHHHGGGSCHHHHHHHHH
T ss_pred CCCCceEEEeCCCCHHHHHHHHHHHHHHHCCCCCEEEEeccccCccCCccCCcccchhhhcccccccccccHHHHHHHHH
Confidence 9 789999999999999999999999999999999999999754311 0000000
Q ss_pred ---------------------cccccc-ccCC---------------------CCCCCCCC-------------CCCCC-
Q 018905 262 ---------------------SRALTT-KYNG---------------------TPQEASRP-------------FDCGR- 284 (349)
Q Consensus 262 ---------------------~~~l~~-~~~~---------------------~~~~~~~p-------------f~~~~- 284 (349)
...... .+.+ .+++.+|| |+.++
T Consensus 184 ~~~gitre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~~~~~d~~~rp~~t~e~l~~~~~vfd~~~~ 263 (418)
T 2iik_A 184 ERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGS 263 (418)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEEEECTTSCEEEEEECSCTTCCTTCCHHHHHHCCCSSSTTCC
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhChhcCccccceeeeeeccccccCcccceeeecccCcCCCCCHHHHhhCCCcccCCCc
Confidence 000000 0000 12467888 99875
Q ss_pred ----CcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 285 ----DGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 285 ----~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+|+.++|||+++||++++.|+++|.+|+++|.|++.++. .|+..+.++..++++||++|
T Consensus 264 ~t~~d~~~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~A 326 (418)
T 2iik_A 264 TTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGV-----PPDIMGIGPAYAIPVALQKA 326 (418)
T ss_dssp CCSTTBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHH
T ss_pred eeeccccCCCCCceEEEEecHHHHHhcCCCceEEEEEEEeccC-----CchhcchhHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998764 56656778899999999986
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-22 Score=190.77 Aligned_cols=184 Identities=20% Similarity=0.304 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..+|+++++++||+|+|+++++++ ++++|+..+... ...++.+++..+|
T Consensus 27 ~~~L~~~a~~~Al~dAgl~~~~id-----~~~~g~~~~~~~--------------------------~~~~a~~ia~~lg 75 (392)
T 2vu1_A 27 AHELGATVISAVLERAGVAAGEVN-----EVILGQVLPAGE--------------------------GQNPARQAAMKAG 75 (392)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCTTS--------------------------CSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCCC--------------------------CcHHHHHHHHHcC
Confidence 577999999999999999988776 788887654210 1246788999999
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHH----H-------HHHH--------------
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALS----M-------AGFC-------------- 260 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~----~-------~~~~-------------- 260 (349)
++ +|+++|+++|+|++.||.+|+++|++|++|++||+|+|.+.. +.. . ..+.
T Consensus 76 l~~~~p~~~v~~aCaSgl~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (392)
T 2vu1_A 76 VPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGY 155 (392)
T ss_dssp CCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTTCCEEECCTTCCCSSCEEEEEHHHHHHTBCTTTCC
T ss_pred CCCCceEEEecccchHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCccccccccccccCcccccchhhhcccccccccc
Confidence 98 899999999999999999999999999999999999997533 210 0 0000
Q ss_pred hcccc----------cc---------------------ccCCC--C-----CCCCCCCCCC-------------------
Q 018905 261 KSRAL----------TT---------------------KYNGT--P-----QEASRPFDCG------------------- 283 (349)
Q Consensus 261 ~~~~l----------~~---------------------~~~~~--~-----~~~~~pf~~~------------------- 283 (349)
.++.+ +. .+.++ | ...++|||.+
T Consensus 156 ~~~~~a~~~~~~~g~s~e~~~~~a~~s~~~A~~~~~ag~~~~ei~p~~~~~~~~~~~f~~d~~~r~~~t~e~~~~~~~v~ 235 (392)
T 2vu1_A 156 HMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAF 235 (392)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEECCTTCCEEECSCSSCCTTCCHHHHHTCCCSS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeeeeeeccCCCceeeccccccCCCCCHHHHhcCCCcc
Confidence 01111 10 00000 0 0126789887
Q ss_pred -CCcce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 284 -RDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 284 -~~G~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
++|++ ++|||+++||+++++|+++|.+|+++|.|++.+++ .|++.+.++..++++||++|
T Consensus 236 ~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~a 303 (392)
T 2vu1_A 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGV-----DPKVMGTGPIPASRKALERA 303 (392)
T ss_dssp CTTCCCCSSSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHH
T ss_pred CCCCCeeCcccCCccChhheeeEecHHHHHhcCCCccEEEEEEEEeec-----ChhhcchhHHHHHHHHHHHc
Confidence 78999 99999999999999999999999999999999875 56656677899999999986
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=185.79 Aligned_cols=183 Identities=18% Similarity=0.194 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHCC----CCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHH
Q 018905 129 FIAYALCAADEALHDAK----WLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAg----i~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (349)
..+|+++++++||+|+| +++++++ +|++|+..++. ..+.++.+++
T Consensus 35 ~~~La~~Aa~~Al~~Ag~~~~l~~~~id-----~v~~g~~~~~~--------------------------~~~~~a~~va 83 (393)
T 1afw_A 35 TDYLLYNFLNEFIGRFPEPLRADLNLIE-----EVACGNVLNVG--------------------------AGATEHRAAC 83 (393)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHTCGGGCC-----CEEEECSSSBG--------------------------GGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHCC-----EEEEEecCCCC--------------------------CCChHHHHHH
Confidence 46799999999999999 9888776 79999865432 1246788999
Q ss_pred HHcCC--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHH-----------HH--HH-----Hhcc
Q 018905 205 MKYGF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALS-----------MA--GF-----CKSR 263 (349)
Q Consensus 205 ~~lgl--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~-----------~~--~~-----~~~~ 263 (349)
..+|+ ++|+++|+++|+|++.||.+|+++|++|++|++||+|+|.+.. +.. +. .+ ..++
T Consensus 84 ~~lGl~~~~p~~~v~~aCasg~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 163 (393)
T 1afw_A 84 LASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMG 163 (393)
T ss_dssp HHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHHHGGGSCTTCSCCCHHHHHCTTGGGGGSCHH
T ss_pred HHcCCCCCceEEEEcCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEEecCCCcccccccccccchhhhhcccccccchhHH
Confidence 99999 7899999999999999999999999999999999999997322 110 00 00 0011
Q ss_pred cccc----ccC----------------------------------------CCCCC------------CCCC-CCCCCCc
Q 018905 264 ALTT----KYN----------------------------------------GTPQE------------ASRP-FDCGRDG 286 (349)
Q Consensus 264 ~l~~----~~~----------------------------------------~~~~~------------~~~p-f~~~~~G 286 (349)
.+.+ +|. -++++ .++| |+.++ |
T Consensus 164 ~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~f~~ei~P~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf~~~~-G 242 (393)
T 1afw_A 164 ITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGPRPNVTAESLSSIRPAFIKDR-G 242 (393)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTSSTTTBCCEECTTSCEECSCSSCCSCCCHHHHHHCCBSCC----C
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCccceeeeeeccCCceeccccccCCCCCHHHHhcCCCcccCCC-C
Confidence 1100 000 00122 2456 87654 7
Q ss_pred ce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 287 FV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 287 ~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
++ ++|||+++||+++++|+++|.+|+++|.|++.+++ .|+..+.++..++++||++|
T Consensus 243 ~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~A 306 (393)
T 1afw_A 243 TTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGV-----PPEIMGVGPAYAIPKVLEAT 306 (393)
T ss_dssp CCBTTTBCCBEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHH
T ss_pred CeechhcCcccchhheeeEecHHHHHHcCCCccEEEEEEEEecc-----ChhhcchhHHHHHHHHHHHc
Confidence 76 89999999999999999999999999999999988 45555678899999999986
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=187.09 Aligned_cols=184 Identities=21% Similarity=0.251 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..+|+++++++||+|+|+++++++ ++++|+..+.. ....++.+++..+|
T Consensus 32 ~~~l~~~a~~~Al~dAgl~~~~id-----~~~~g~~~~~~--------------------------~~~~~a~~va~~lg 80 (395)
T 2ib8_A 32 ATKLGSIAIQGAIEKAGIPKEEVK-----EAYMGNVLQGG--------------------------EGQAPTRQAVLGAG 80 (395)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCTT--------------------------SCSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCC--------------------------CCchHHHHHHHHcC
Confidence 467999999999999999988776 78888754321 01235788999999
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHH-------------------HHH---------
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-------------------MAG--------- 258 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~-------------------~~~--------- 258 (349)
+ ++|+++|+++|+|++.||.+|+++|++|++|++||+|+|.+..... +..
T Consensus 81 l~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (395)
T 2ib8_A 81 LPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIH 160 (395)
T ss_dssp CCTTCCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGCCEEECSSBCCTTCEEEEEHHHHHTTEETTTTEE
T ss_pred CCCCceEEEecccccHHHHHHHHHHHHHHCCCCCEEEEEeeecccCCcccccccccccccccccccccccccccccccch
Confidence 9 8999999999999999999999999999999999999997432110 000
Q ss_pred --------HHhcccccc--------------------ccCC-----------------CCCCCCCC--CCC---------
Q 018905 259 --------FCKSRALTT--------------------KYNG-----------------TPQEASRP--FDC--------- 282 (349)
Q Consensus 259 --------~~~~~~l~~--------------------~~~~-----------------~~~~~~~p--f~~--------- 282 (349)
....+...+ .+.+ ..++.+++ |+.
T Consensus 161 m~~~a~~~~~~~g~sre~~~~~A~~s~~~a~~a~~~~~f~~ei~p~~~~~~~~p~~~~~~D~~~r~~~~~~l~~l~~~f~ 240 (395)
T 2ib8_A 161 MGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQ 240 (395)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEECCTTSCCEEECSCSGGGSCCTTTGGGSCCTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCcccceeeeeecccCCcceeeccccccccCCHHHHhcCCcccc
Confidence 011110000 0000 01112222 444
Q ss_pred CCCcce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 283 GRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 283 ~~~G~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+++|++ ++|||+++||++++.|+++|.+||++|+|++.++. .|...+.++..++++||++|
T Consensus 241 ~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~A 308 (395)
T 2ib8_A 241 KENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAV-----EPIDFPIAPVYAASMVLKDV 308 (395)
T ss_dssp SSSCCCCTTTBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHH
T ss_pred CCCCCcccccCCccccceeEEEEecHHHHHhcCCCccEEEEEEEEecc-----ChhhccccHHHHHHHHHHHc
Confidence 558999 99999999999999999999999999999998752 55556678899999999986
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=184.92 Aligned_cols=183 Identities=20% Similarity=0.316 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..+|+++++++||+|||+++++++ +|++|+..++.. ..+.++.+++..+|
T Consensus 55 ~~~La~~Aa~~AL~dAGl~~~~Id-----~vi~g~~~~~~~-------------------------~~~~~a~~va~~lG 104 (442)
T 2wu9_A 55 PDDLLAPVLRALIEKTNLNPSEVG-----DIVVGTVLAPGS-------------------------QRASECRMAAFYAG 104 (442)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----CEEEECCSSBHH-------------------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeecCccC-------------------------CCChHHHHHHHHcC
Confidence 468999999999999999988876 799998654321 12456789999999
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hH---------HHH-HHH-----hccccc----
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-AL---------SMA-GFC-----KSRALT---- 266 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~---------~~~-~~~-----~~~~l~---- 266 (349)
+ .+|+++|+++|+|++.||.+|+++|++|++|++||+|+|.+.. +. ... .+. .++...
T Consensus 105 l~~~~p~~~v~~aCaSg~~Al~~A~~~I~sG~~d~vLvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~mg~~A~~~~ 184 (442)
T 2wu9_A 105 FPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVA 184 (442)
T ss_dssp CCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCCCCCSCCCGGGGGCHHHHHTTSCHHHHHHHHH
T ss_pred CCCCceEEEeCCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccchhhhhccccccchhHHHHHHHHHH
Confidence 9 7899999999999999999999999999999999999997543 11 000 000 010000
Q ss_pred --------------------------c-ccCCC----------------------CCC------------CCCC-CCCCC
Q 018905 267 --------------------------T-KYNGT----------------------PQE------------ASRP-FDCGR 284 (349)
Q Consensus 267 --------------------------~-~~~~~----------------------~~~------------~~~p-f~~~~ 284 (349)
. .+.+. .++ .++| |+.
T Consensus 185 ~~~gisre~~~~~A~~s~~~A~~~p~ag~~~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~t~e~~~~~rpvfd~-- 262 (442)
T 2wu9_A 185 QRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKK-- 262 (442)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEECTTTCCEEEEEECSCTTCCTTCCHHHHHTSCCSSCT--
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhChhcccccccccceeeccccccccccCceeeecccCcCCCCCHHHHhcCCCccCC--
Confidence 0 00000 011 3456 764
Q ss_pred Ccce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 285 DGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 285 ~G~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+|++ ++|||+++||++++.|+++|.+|+++|.|++.+++ .|+..+.++..++++||++|
T Consensus 263 ~G~vt~~n~s~~~DGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~A~~~Al~~A 328 (442)
T 2wu9_A 263 DGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGV-----DPAIMGIGPAVAIPAAVKAA 328 (442)
T ss_dssp TCCCCGGGBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHT
T ss_pred CCCeechhcCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEecC-----CchhcchHHHHHHHHHHHHc
Confidence 5777 79999999999999999999999999999999987 45555778899999999986
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=185.72 Aligned_cols=183 Identities=22% Similarity=0.278 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
..+|+++++++||+|+|+++++++ +|++|+..++.. ..+.++.+++..+|
T Consensus 26 ~~~L~~~Aa~~Al~dAgl~~~~id-----~v~~g~~~~~~~-------------------------~~~~~a~~va~~lG 75 (401)
T 1ulq_A 26 PDDLLAHALSVLVDRSGVPKEEVE-----DVYAGCANQAGE-------------------------DNRNVARMALLLAG 75 (401)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCSST-------------------------TTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccCCC-------------------------CCChHHHHHHHHhC
Confidence 467999999999999999988876 899998654321 01356889999999
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC-hHH--------------H----------HHHH-
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALS--------------M----------AGFC- 260 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~-~~~--------------~----------~~~~- 260 (349)
+ ++|+++|+++|+|++.||.+|+++|++|++|++||+|+|.+.. |.. + .++.
T Consensus 76 l~~~~p~~~v~~aCas~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p 155 (401)
T 1ulq_A 76 FPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQ 155 (401)
T ss_dssp CCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSSCCEEECCCCSSSCCSCEEEEETTSSCCSCCHHHH
T ss_pred CCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCcccccccccccccCcccccchhhhccccccccc
Confidence 9 7899999999999999999999999999999999999997543 210 0 0110
Q ss_pred -h-----cccc---------------------cc----------ccCC----------------CCCC------------
Q 018905 261 -K-----SRAL---------------------TT----------KYNG----------------TPQE------------ 275 (349)
Q Consensus 261 -~-----~~~l---------------------~~----------~~~~----------------~~~~------------ 275 (349)
. ++.. ++ .+.+ ++++
T Consensus 156 ~~~~~~~~~~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~~~~ei~P~~~~~~~~~~~~~~d~~~r~~~t~e~~~ 235 (401)
T 1ulq_A 156 ALYGTESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLA 235 (401)
T ss_dssp HHSCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHH
T ss_pred cccccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeceeecCCCCceeeccccccCCCCCHHHHh
Confidence 0 1110 00 0000 0111
Q ss_pred CCCC-CCCCCCcce-------ecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 018905 276 ASRP-FDCGRDGFV-------IGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 347 (349)
Q Consensus 276 ~~~p-f~~~~~G~~-------~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~ 347 (349)
.++| |+. +|++ ++|||+++||+++++|+++|.+|+++|.|++.+++ .|+..+.++..++++||++
T Consensus 236 ~~rpif~~--~G~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~ 308 (401)
T 1ulq_A 236 ALRPVFRE--GGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGV-----PPRIMGIGPVPATRKALER 308 (401)
T ss_dssp HSCBSSST--TCSCBGGGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHH
T ss_pred hCCCccCC--CCCeechhcCCccchheEEEEecHHHHHHcCCCceEEEEEEEEecC-----CccccchhHHHHHHHHHHH
Confidence 3466 765 5777 79999999999999999999999999999999987 3444466779999999998
Q ss_pred h
Q 018905 348 A 348 (349)
Q Consensus 348 A 348 (349)
|
T Consensus 309 A 309 (401)
T 1ulq_A 309 A 309 (401)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=175.97 Aligned_cols=186 Identities=22% Similarity=0.232 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHC-CCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 128 RFIAYALCAADEALHDA-KWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dA-gi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
+..+|+++++++||+|+ |+++++++ ++++|+..+... ....++.+++..
T Consensus 26 ~~~~L~~~a~~~Al~~a~gi~~~~Id-----~v~~g~~~~~~~-------------------------~~~~~a~~~~~~ 75 (387)
T 3goa_A 26 RAEDLSAHLMRSLLARNPSLTAATLD-----DIYWGCVQQTLE-------------------------QGFNIARNAALL 75 (387)
T ss_dssp CHHHHHHHHHHHHHHHCTTSCGGGCC-----EEEEECSCCSBT-------------------------TTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHcC-----EEEEEcccCCcc-------------------------cccHHHHHHHHH
Confidence 36789999999999999 99999998 899998643311 012356788999
Q ss_pred cCC--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH-------------------------HHH
Q 018905 207 YGF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM-------------------------AGF 259 (349)
Q Consensus 207 lgl--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~-------------------------~~~ 259 (349)
+|+ .+|+++|+++|+|++.||++|+++|++|++|.+||+|+|.+...... ...
T Consensus 76 ~Gl~~~~p~~~v~~aCss~l~Al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~ 155 (387)
T 3goa_A 76 AEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLS 155 (387)
T ss_dssp TTCCTTSCCEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECTTTSCTTTTBCCCTTCC-------CCCHHHHHHHH
T ss_pred cCCCCCCcEeEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEecCCCCccccccCcCcccccccccccccHHHHHHHHH
Confidence 999 57999999999999999999999999999999999999975432110 000
Q ss_pred Hhc------------------------ccccccc-------------CCCCCCCCCC-------------CCC------C
Q 018905 260 CKS------------------------RALTTKY-------------NGTPQEASRP-------------FDC------G 283 (349)
Q Consensus 260 ~~~------------------------~~l~~~~-------------~~~~~~~~~p-------------f~~------~ 283 (349)
... +.+.... .-++++.+|| |+. .
T Consensus 156 ~~~g~tre~~~~~a~~s~~~A~~a~~~g~f~~ei~p~~~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~p~f~~~~g~~t~ 235 (387)
T 3goa_A 156 RLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTA 235 (387)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECTTSCEEEECSCTTCCTTCCHHHHTTSCCSSCTTTCCCCG
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhHhcCCcccceeeeeeccccCcccccccccccCCCCCHHHHhcCCCcccCCCCceec
Confidence 000 0000000 0011233332 554 1
Q ss_pred CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 284 RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 284 ~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
.++..++||++++||+++++|+++|.+|+++|+|++.+++ .|++.+.++..++++||++|
T Consensus 236 ~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~a 295 (387)
T 3goa_A 236 GTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGC-----DPSIMGYGPVPASKLALKKA 295 (387)
T ss_dssp GGBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEEC-----CTTSTTCTHHHHHHHHHHHH
T ss_pred ccCCCcCccEEEEEEecHHHHHHcCCCccEEEEEEEEcCC-----CCCcchHHHHHHHHHHHHHc
Confidence 4667799999999999999999999999999999999988 34455556789999999976
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=176.86 Aligned_cols=184 Identities=24% Similarity=0.356 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+++|+++||+|+|+++++++ ++++|+..+... ...++.+++..+|
T Consensus 31 ~~~L~~~A~~~AL~~agl~~~dId-----~vi~g~~~~~~~--------------------------~~~~a~~v~~~lG 79 (396)
T 4dd5_A 31 AVELGVTAAKEAIKRANITPDMID-----ESLLGGVLTAGL--------------------------GQNIARQIALGAG 79 (396)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC-----EEEEECSCCTTS--------------------------CSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeecCCCC--------------------------CchHHHHHHHHcC
Confidence 567999999999999999999988 899998653210 1235678999999
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH------------------------------
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM------------------------------ 256 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~------------------------------ 256 (349)
+ .+|+++|+++|+|++.||..|+++|++|.+|.+||+|+|.+......
T Consensus 80 l~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (396)
T 4dd5_A 80 IPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNN 159 (396)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEESTTCCEECTTTTTCCCSSCCCCEEHHHHHTSEETTTT
T ss_pred CCCCceEEEeccccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccCCcccccccccccccCcccccchhhhccccccccc
Confidence 9 57999999999999999999999999999999999999975431100
Q ss_pred --------HHHHhc------------------------ccccccc------------CCCCCCCCCC-------------
Q 018905 257 --------AGFCKS------------------------RALTTKY------------NGTPQEASRP------------- 279 (349)
Q Consensus 257 --------~~~~~~------------------------~~l~~~~------------~~~~~~~~~p------------- 279 (349)
..+... +.+.+.. .-++++..|+
T Consensus 160 ~~~~~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~~v 239 (396)
T 4dd5_A 160 YHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLRPA 239 (396)
T ss_dssp EEHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEC----CEEECSCSCCCTTCCHHHHHHCCBS
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCcccceeeeeeccCCCceeecCcccccCCCCHHHHhhCCCc
Confidence 000000 0000000 0012222222
Q ss_pred CCC-----CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 280 FDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 280 f~~-----~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+. ..++..++|||+++||++++.|+++|.+|+++|.|++.+++ .|++.+.++..++++||++|
T Consensus 240 ~~p~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~A 308 (396)
T 4dd5_A 240 FKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGV-----DPKIMGYGPVPATKKALEAA 308 (396)
T ss_dssp SSTTCSCBTTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHH
T ss_pred cCCCCCeecCCCCCcCcceeEEEEeeHHHHHHCCCCceEEEEEEEEecC-----CCCcccHHHHHHHHHHHHHc
Confidence 432 24566789999999999999999999999999999999886 56666777899999999976
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=177.55 Aligned_cols=184 Identities=26% Similarity=0.336 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+++|+++||+|+|+++++++ ++++|+...... ...++.+++..+|
T Consensus 29 ~~~L~~~A~~~Al~~agl~~~~Id-----~v~~g~~~~~~~--------------------------~~~~a~~i~~~lG 77 (394)
T 3ss6_A 29 PVELAVPVLQEAVKRGGVEPHEVD-----EVILGHCIQRTD--------------------------EANTARTAALAAG 77 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC-----EEEEECSSCCGG--------------------------GCSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHhHCC-----EEEEEEccCCCc--------------------------cchHHHHHHHHcC
Confidence 567999999999999999999998 899998653321 1235678999999
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH------------------------------
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM------------------------------ 256 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~------------------------------ 256 (349)
+ .+|+++|+++|+|++.||+.|+++|++|.+|.+||+|+|.+......
T Consensus 78 l~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (394)
T 3ss6_A 78 FPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHI 157 (394)
T ss_dssp CCTTCEEEEEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEECTTCCEEESSTTTCCCSSCCCCEEHHHHHTBCTTTCC
T ss_pred CCCCceEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEhhccCCcccccccccccccCCcccccccccccccccccc
Confidence 9 57999999999999999999999999999999999999975431100
Q ss_pred -------HHHHhcc------------------------ccccc------------cCCCCCCCCCC-------------C
Q 018905 257 -------AGFCKSR------------------------ALTTK------------YNGTPQEASRP-------------F 280 (349)
Q Consensus 257 -------~~~~~~~------------------------~l~~~------------~~~~~~~~~~p-------------f 280 (349)
......+ .+.+. ..-++++.+|+ |
T Consensus 158 ~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~d~~~R~~~t~e~~~~~~pvf 237 (394)
T 3ss6_A 158 MMGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPAF 237 (394)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECSSCEEEECSCCCCCTTCCHHHHHTCCBSS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeEeEEeccCCCceeecccccccCCCCHHHHhhCCCcc
Confidence 0000000 00000 00123344443 5
Q ss_pred CCC-----CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 281 DCG-----RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 281 ~~~-----~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
+.+ .++..++||++++||++++.|+++|.+|+++|.|++.++. .|++.+.++..++++||++|
T Consensus 238 ~~~g~~t~~~~~~~~dGaaavvL~~~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~a 305 (394)
T 3ss6_A 238 RKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGV-----DPKIMGIGPAPAIRKGLEKV 305 (394)
T ss_dssp STTCCCBSTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHH
T ss_pred CCCCceecCccCCcccceeEEEeccHHHHHHCCCCceEEEEEEEEecC-----CCccchHHHHHHHHHHHHHc
Confidence 532 5677789999999999999999999999999999999874 56666667799999999876
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=172.97 Aligned_cols=184 Identities=24% Similarity=0.344 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+++|+++||+|+|+++++++ ++++|+..+... ...++.+++..+|
T Consensus 29 ~~~L~~~a~~~Al~~agi~~~~Id-----~v~~g~~~~~~~--------------------------~~~~a~~~~~~lG 77 (395)
T 4e1l_A 29 AVQLGTIAVKEAISRVGLNLSEID-----EVIIGNVLQTGL--------------------------GQNVARQIAINAG 77 (395)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC-----EEEEECCCCSST--------------------------TCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCCC--------------------------cchHHHHHHHHcC
Confidence 567999999999999999999988 899998543210 1135678999999
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHH-----------------------------
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA----------------------------- 257 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~----------------------------- 257 (349)
+ ++|+++|+++|+|++.||..|+++|++|.+|.+||+|+|.+.......
T Consensus 78 l~~~~p~~~v~~~Css~~~al~~A~~~I~~G~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (395)
T 4e1l_A 78 IPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQ 157 (395)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTHHHHSBHHHHEEESCCC------CCTTEEEETTH
T ss_pred CCCCceEEEccccchHHHHHHHHHHHHHhCCCCCEEEEEEEecccCCcccccccccccccCccccchhhccccccccccc
Confidence 9 679999999999999999999999999999999999999865522110
Q ss_pred -HH--------Hhcc------------------------ccccc-------------cCCCCCCCCCC------------
Q 018905 258 -GF--------CKSR------------------------ALTTK-------------YNGTPQEASRP------------ 279 (349)
Q Consensus 258 -~~--------~~~~------------------------~l~~~-------------~~~~~~~~~~p------------ 279 (349)
.| ...+ .+.+. ..-++++..|+
T Consensus 158 ~~~g~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~~~~ei~pv~~~~~~g~~~~~~~d~~~r~~~t~e~l~~~~~ 237 (395)
T 4e1l_A 158 YHMGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKLKP 237 (395)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEETTEEEEECSCSCCCTTCCHHHHHHCCB
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeEeccCCCcceEECCccccCCCCCHHHHhhCCC
Confidence 00 0000 00000 00012233332
Q ss_pred -CCC-----CCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 280 -FDC-----GRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 280 -f~~-----~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|+. ..++..++||++++||++++.|+++|.+|+++|.|++.+++ .|++.+.++..++++||++|
T Consensus 238 v~~~~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~ai~~al~~a 307 (395)
T 4e1l_A 238 AFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGV-----EPEVMGTGPIPATRKALKKA 307 (395)
T ss_dssp SSSTTCSCBTTSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGTTCTHHHHHHHHHHHT
T ss_pred ccCCCCCeeCCcCCCccceEEEEEEecHHHHHHCCCCeEEEEEEEEEccC-----CCCcchHHHHHHHHHHHHHc
Confidence 432 24567789999999999999999999999999999999876 55555666789999999876
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=172.47 Aligned_cols=185 Identities=19% Similarity=0.179 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALHD-AKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~d-Agi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
..+|+.+|+++||+| +|+++++++ ++++|+...... ....++.+++..+
T Consensus 32 ~~~L~~~A~~~AL~~~AGl~~~dId-----~vi~g~~~~~~~-------------------------~~~~~a~~va~~l 81 (407)
T 3svk_A 32 PLNLVVGLVDELRRRYPDLDETLIS-----DMILGVVSPVGD-------------------------QGGDIARTAVLAA 81 (407)
T ss_dssp HHHHHHHHHHHHHHHSTTCCGGGEE-----EEEEECC---------------------------------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhcCcCHHHCC-----EEEEEecCcccc-------------------------ccCcHHHHHHHHc
Confidence 577999999999999 999999887 899998532210 0123567899999
Q ss_pred CC--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHH--------------------HHH------
Q 018905 208 GF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM--------------------AGF------ 259 (349)
Q Consensus 208 gl--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~--------------------~~~------ 259 (349)
|+ .+|+++|+++|+|++.||..|+++|++|++|++||+|+|.+...... .++
T Consensus 82 Glp~~~pa~~v~~~Css~~~Al~~A~~~I~sG~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~Ae~~a 161 (407)
T 3svk_A 82 GLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPETNYRIGFVPQGIGADLIA 161 (407)
T ss_dssp TCCTTCEEEEEC---CBSCCHHHHHHHHHHHTSCCEEEEEEEECC-----------CCCCTTTCCCCCCHHHHHHHHHHH
T ss_pred CCCCCCceEEecCcChhHHHHHHHHHHHHHcCCCCEEEEEEEcccccCcccccccccccCchhhccccccCHHHHHHHHH
Confidence 99 67999999999999999999999999999999999999985531100 000
Q ss_pred ----------Hhccccc---------cc-cC--------------CCCCCCCCC-------------CCCC---------
Q 018905 260 ----------CKSRALT---------TK-YN--------------GTPQEASRP-------------FDCG--------- 283 (349)
Q Consensus 260 ----------~~~~~l~---------~~-~~--------------~~~~~~~~p-------------f~~~--------- 283 (349)
......+ .. +. -+|+...|+ |+.+
T Consensus 162 ~~~~i~re~~d~~a~~s~~~A~~A~~~g~~~~ei~pv~~~~g~~~~~pd~~~r~~~t~e~l~~~~~vf~~~g~v~~~~~~ 241 (407)
T 3svk_A 162 TLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDDV 241 (407)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEECTTSCEEECSCTTCCTTCCHHHHHTSCBSCC-----------
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeecCCCceeeCCccccCCCCCHHHHhhCCCeecCCCcccccccc
Confidence 0000000 00 00 113333332 4422
Q ss_pred -----------------CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHH
Q 018905 284 -----------------RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 346 (349)
Q Consensus 284 -----------------~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~ 346 (349)
.+...++|||+++||++++.|+++|.+|+++|.|++.+++ .|...+.++..++++||+
T Consensus 242 ~~~~~~~~~~i~~~~t~~~~s~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~ 316 (407)
T 3svk_A 242 ALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATATSGS-----DPVIMLTGPTPATRKVLD 316 (407)
T ss_dssp --CTTTTCSSCCCCCBTTTBCCBEEEEEEEEEECHHHHHHTTCCCCEEEEEEEEC-----------CCCTHHHHHHHHHH
T ss_pred ccccccccccccccccccccCcccCceeEEEEeeHHHHHHcCCCCcEEEEEEEEecc-----CCccccHHHHHHHHHHHH
Confidence 3556699999999999999999999999999999999887 344445566899999998
Q ss_pred Hh
Q 018905 347 QA 348 (349)
Q Consensus 347 ~A 348 (349)
+|
T Consensus 317 ~A 318 (407)
T 3svk_A 317 RA 318 (407)
T ss_dssp HH
T ss_pred Hc
Confidence 76
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-20 Score=172.08 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
++..+|+++|+++||+++|+++++++ +|++|+..+.. . ...++.+++..
T Consensus 49 ~~~~~l~~~a~~~al~~ag~~~~~id-----~vi~g~~~~~~---------------------~-----~~~~a~~v~~~ 97 (317)
T 1hnj_A 49 ETVSTMGFEAATRAIEMAGIEKDQIG-----LIVVATTSATH---------------------A-----FPSAACQIQSM 97 (317)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCSC---------------------S-----SSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC---------------------C-----CCcHHHHHHHH
Confidence 45789999999999999999988876 89999864321 0 11367889999
Q ss_pred cCCC-CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCC
Q 018905 207 YGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (349)
Q Consensus 207 lgl~-Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~ 285 (349)
||++ +|+++|+++|+|++.||..|+++|++|++|.+||+|+|.+ ++. +. |+...+
T Consensus 98 lgl~~~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~-s~~----------~~-------------~~d~~~ 153 (317)
T 1hnj_A 98 LGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVL-ART----------CD-------------PTDRGT 153 (317)
T ss_dssp HTCCSSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECH-HHH----------SC-------------TTCHHH
T ss_pred hCCCCCeEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechh-ccc----------CC-------------chhccc
Confidence 9997 8999999999999999999999999999999999999972 211 00 122234
Q ss_pred cceecceeeeEEeCChHHHHhcCCeEeEEEEeE-EeeCCCCCCCCC-----------CCCcH--------HHHHHHHHHH
Q 018905 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGY-GMSGDAHHITQP-----------HIDGK--------GAILAMTRAL 345 (349)
Q Consensus 286 G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~-~~~~d~~~~~~p-----------~~~g~--------~~~~a~~~Al 345 (349)
|+++||||+++||++.+. ..+++.+.+. +...+..++..| ..+|+ .+.++++++|
T Consensus 154 ~~~~GdGA~A~vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~aL 228 (317)
T 1hnj_A 154 IIIFGDGAGAAVLAASEE-----PGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETL 228 (317)
T ss_dssp HTTBCCEEEEEEEEEESS-----CSEEEEEEEECGGGGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeccccEEEEEEecCC-----CceeeEEEEEcCCCCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999997653 3577776552 222233333221 12344 6678888888
Q ss_pred HHh
Q 018905 346 KQA 348 (349)
Q Consensus 346 ~~A 348 (349)
+++
T Consensus 229 ~~a 231 (317)
T 1hnj_A 229 AAN 231 (317)
T ss_dssp HHT
T ss_pred HHc
Confidence 865
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-20 Score=169.21 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
++..+|+++|+.+||+++|+++++++ +|++|++.+.. .. + ..+.+++..
T Consensus 48 ~~~~~la~~a~~~al~~ag~~~~~id-----~vi~~~~~~~~---------------------~~----~-~~a~~v~~~ 96 (322)
T 1ub7_A 48 EYTSDLAFKAVEDLLRRHPGALEGVD-----AVIVATNTPDA---------------------LF----P-DTAALVQAR 96 (322)
T ss_dssp CCHHHHHHHHHHHHHHHSTTTTTTEE-----EEEEECSSCSE---------------------EE----S-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC---------------------CC----C-cHHHHHHHH
Confidence 35788999999999999999887776 78999864321 11 1 257889999
Q ss_pred cCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 207 YGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 207 lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
||+++|+++|+++|+|++.||..|+++|++|++|.+||+|+|. .++. ..|+| .++|
T Consensus 97 lgl~~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~-~s~~----------------------~~~~d-~~~~ 152 (322)
T 1ub7_A 97 FGLKAFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEA-LSKI----------------------IDWND-RATA 152 (322)
T ss_dssp TTCCCEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEEC-GGGT----------------------SCTTC-HHHH
T ss_pred hCCCCEEEeeCccchHHHHHHHHHHHHHHcCCCCEEEEEEech-hccc----------------------cChhh-cccc
Confidence 9999999999999999999999999999999999999999997 3321 11344 4578
Q ss_pred ceecceeeeEEeCChHHHHhcCCeEeEEE-EeEEeeCCCCCCCC-----CCC---------Cc--------HHHHHHHHH
Q 018905 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEV-RGYGMSGDAHHITQ-----PHI---------DG--------KGAILAMTR 343 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~~A~~~g~~~~a~i-~g~~~~~d~~~~~~-----p~~---------~g--------~~~~~a~~~ 343 (349)
+++||||+++||++.+. +.++++.+ .+.+...+..++.. |+. +| ..+.+++++
T Consensus 153 ~~~GdGA~A~vL~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ 228 (322)
T 1ub7_A 153 VLFGDGGGAAVVGKVRE----GYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLE 228 (322)
T ss_dssp TTBCCEEEEEEEECCCT----TCEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHH
T ss_pred eeeccccEEEEEEecCC----CCceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHH
Confidence 99999999999998653 34566654 33333333322211 332 23 467788888
Q ss_pred HHHHh
Q 018905 344 ALKQA 348 (349)
Q Consensus 344 Al~~A 348 (349)
+|+++
T Consensus 229 al~~a 233 (322)
T 1ub7_A 229 AIEKA 233 (322)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 88875
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-19 Score=165.62 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
++..+|+++|+.+||+++|+++++++ +|++|+..++. . .++ ++.+++..
T Consensus 48 ~~~~~l~~~a~~~al~~ag~~~~~id-----~v~~~~~~~~~---------------------~----~~~-~a~~v~~~ 96 (309)
T 2ebd_A 48 ETITYMATQAAKEALREANLSPEELD-----LIILATLTPQK---------------------R----FPS-TACLVQAQ 96 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCS-----EEEEECSSCSS---------------------S----SSC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC---------------------C----CCc-HHHHHHHH
Confidence 45789999999999999999988876 89999865421 0 112 67889999
Q ss_pred cCCCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCC
Q 018905 207 YGFQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (349)
Q Consensus 207 lgl~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~ 285 (349)
||+++ |+++|+++|+|++.||..|+++|++|++|.+||+|+|.+ ++. + . |+...+
T Consensus 97 lgl~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vlv~g~e~~-s~~----------~------------~-~~~~~~ 152 (309)
T 2ebd_A 97 LKAKGVYAFDISAACSGFIYALDIADSFIKSGKAKNVLVIGAEKL-SEA----------V------------D-WEDRST 152 (309)
T ss_dssp HTCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG-GGT----------C------------C-TTCTTT
T ss_pred hCCCCceEEecCccchHHHHHHHHHHHHHHCCCCCEEEEEEeccc-ccc----------c------------C-ccchhh
Confidence 99998 999999999999999999999999999999999999973 210 0 1 233457
Q ss_pred cceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCC---CCCCC-----CCCcH--------HHHHHHHHHHHHh
Q 018905 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH---HITQP-----HIDGK--------GAILAMTRALKQA 348 (349)
Q Consensus 286 G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~---~~~~p-----~~~g~--------~~~~a~~~Al~~A 348 (349)
|+++||||+++||++.+.+ ..+++.+ ..+++. +++.| ..++. .+.++++++|++|
T Consensus 153 ~~~~gdGaaA~vL~~~~~~----~~i~~~~----~~~~g~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~i~~al~~a 223 (309)
T 2ebd_A 153 CVLFGDGAGAVVVTRSEDK----SDILATR----MYAEGSLEELLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKA 223 (309)
T ss_dssp TTTBCEEEEEEEEEECSSS----CEEEEEE----EEECGGGGGGEEECTTCCEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccEEEEEEecCCC----CceeEEE----EEecCCccceeEeCCCCeEEEccHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999987542 2344443 334442 34444 33444 5678888888875
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-20 Score=195.70 Aligned_cols=177 Identities=11% Similarity=0.047 Sum_probs=126.8
Q ss_pred hhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHH
Q 018905 122 DHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASG 201 (349)
Q Consensus 122 ~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 201 (349)
..+.......|++.|+.+||++||+++++++ .++++++.+. .. ...+.
T Consensus 682 ~~~~~~~~~~la~~Aa~~AL~~agl~~~dId-----~ii~~t~~~~----------------------~~-----p~~a~ 729 (979)
T 3tsy_A 682 QEIITAEVPKLGKEAALKALKEWGQPKSKIT-----HLVFCTTSGV----------------------EM-----PGADY 729 (979)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-----EEEEEESSCC----------------------CS-----SCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHCC-----EEEEEeeCCC----------------------CC-----CcHHH
Confidence 3344445677999999999999999998887 7888874321 11 14677
Q ss_pred HHHHHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 202 HVSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 202 ~ia~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
.|+..||++++ .+.++++|++++.||..|.++|++|.++.+||+|+|.....+. .....
T Consensus 730 ~v~~~lGl~~~~~~~~~v~~aCsg~~~Al~~A~~~i~sG~~~~vLvvg~e~~~~~~~------------------~~~~~ 791 (979)
T 3tsy_A 730 KLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFR------------------GPSED 791 (979)
T ss_dssp HHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECTTTTCC------------------CCCSS
T ss_pred HHHHHcCCCcccEEEeeeccccHhHHHHHHHHHHHHHhCCCCEEEEEEEEecchhee------------------CCCcc
Confidence 89999999874 4899999999999999999999999999999999997221110 01111
Q ss_pred CCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCc----------------HHHHHHHH
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDG----------------KGAILAMT 342 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g----------------~~~~~a~~ 342 (349)
.++...+++++||||+|+||++.+.+..++..++....+.+...+..+...+.... ..+.++++
T Consensus 792 ~~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 871 (979)
T 3tsy_A 792 ALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLT 871 (979)
T ss_dssp CHHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHH
T ss_pred CHHHHhhhhhccCceEEEEEecCCCccccCcceEEEeeeeEEecCchhheEEEEecCceEEEEchHHHHHHHHHHHHHHH
Confidence 12222246789999999999988776666777777777777666655443322211 22567888
Q ss_pred HHHHHh
Q 018905 343 RALKQA 348 (349)
Q Consensus 343 ~Al~~A 348 (349)
++|++|
T Consensus 872 ~al~~a 877 (979)
T 3tsy_A 872 QAFDPL 877 (979)
T ss_dssp HHHGGG
T ss_pred HHHhhc
Confidence 888765
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-20 Score=171.87 Aligned_cols=121 Identities=19% Similarity=0.223 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
++..+|+++|+++||+++|+++++++ +|++|++.++. . .+ ..+.+|+..
T Consensus 58 ~~~~~la~~Aa~~al~~ag~~~~~id-----~vi~gt~~~~~---------------------~----~p-~~a~~v~~~ 106 (339)
T 1mzj_A 58 ETIQVMGVAASRRALEHAGVDPAEID-----LVVVSTMTNFV---------------------H----TP-PLSVAIAHE 106 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCCC---------------------C----SS-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCC---------------------C----CC-hHHHHHHHH
Confidence 45789999999999999999988887 89999865432 0 11 256789999
Q ss_pred cCCC-CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCC
Q 018905 207 YGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (349)
Q Consensus 207 lgl~-Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~ 285 (349)
||++ +|+++|+++|+|++.||..|+++|++|.+|.+||+|+|.+ ++. +. ++...+
T Consensus 107 lgl~~~~~~~v~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~-s~~----------~~-------------~~d~~~ 162 (339)
T 1mzj_A 107 LGADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERM-TDV----------ID-------------LADRSL 162 (339)
T ss_dssp HTCTTCEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEG-GGG----------SC-------------SSCTTT
T ss_pred hCCCCccEEEccccchHHHHHHHHHHHHHHCCCCCEEEEEEEccc-ccc----------cC-------------cccccc
Confidence 9998 6999999999999999999999999999999999999973 332 01 112456
Q ss_pred cceecceeeeEEeCChH
Q 018905 286 GFVIGEGSGVLVLEELE 302 (349)
Q Consensus 286 G~~~gEGAaalvL~~~~ 302 (349)
|+++||||+++||++.+
T Consensus 163 ~~~~GdGA~A~vL~~~~ 179 (339)
T 1mzj_A 163 SFLFGDGAGAAVVGPSD 179 (339)
T ss_dssp TTTBCEEEEEEEEEEES
T ss_pred ceEeccCceEEEEEecC
Confidence 89999999999999764
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-19 Score=167.41 Aligned_cols=192 Identities=15% Similarity=0.125 Sum_probs=129.2
Q ss_pred eEEEeeceeCCCCC-CHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCCC
Q 018905 41 VVVTGIGMVTPLGC-GAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLN 119 (349)
Q Consensus 41 v~ItG~g~~~p~g~-~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i~ 119 (349)
+.|+|+|+.+|... +.+++|+.+.... .+.+..+|....+. ..+...+. ...+ ...|+..+-++
T Consensus 10 ~~I~gig~~~P~~~v~~~~l~~~~~~~~---~~~~~~~~~~~i~~-------~~GI~~R~--~~~~---~~~~~~~~~~~ 74 (382)
T 1u0m_A 10 ATLCRPSVSVPEHVITMEETLELARRRH---TDHPQLPLALRLIE-------NTGVRTRH--IVQP---IEDTLEHPGFE 74 (382)
T ss_dssp CEECCCEEECCSEEEEHHHHHHHHHHHH---TTCTTHHHHHHHHH-------HTCCCEEE--ESSC---HHHHTSCCCHH
T ss_pred eEEEEEEEeCCCcccCHHHHHHHHHHhc---cChhhHHHHHHHHH-------hcCCCcce--eecC---hhhhccCCChh
Confidence 79999999999865 7888888775431 11111111000000 11111111 1111 01132111133
Q ss_pred chhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHH
Q 018905 120 SKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMA 199 (349)
Q Consensus 120 ~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
++.....++..+|+++|+.+||+++|+++++++ .|++++..+ +.. + ..
T Consensus 75 ~r~~~~~~~~~~la~~Aa~~aL~~agl~~~~id-----~vi~~t~~~----------------------~~~----p-~~ 122 (382)
T 1u0m_A 75 DRNKVYEREAKSRVPAVIQRALDDAELLATDID-----VIIYVSCTG----------------------FMM----P-SL 122 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCS-----EEEEECSSS----------------------CCS----S-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCC-----EEEEEecCC----------------------CCC----C-cH
Confidence 444444566789999999999999999988886 788887532 111 1 25
Q ss_pred HHHHHHHcCCCC--Ceeec-ccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCC
Q 018905 200 SGHVSMKYGFQG--PNHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (349)
Q Consensus 200 a~~ia~~lgl~G--p~~~v-~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (349)
+.+|+..||+++ |++.| +++|+|++.||..|+++|++|.+|.+||+|+|.+ ++.
T Consensus 123 a~~v~~~lGl~~~~~~~~v~~~aCss~~~Al~~A~~~i~~g~~~~vLv~g~e~~-s~~---------------------- 179 (382)
T 1u0m_A 123 TAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFC-SLC---------------------- 179 (382)
T ss_dssp HHHHHHHTTCCTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEG-GGG----------------------
T ss_pred HHHHHHHhCCCCCcceEEccCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEecc-chh----------------------
Confidence 678999999988 89999 8999999999999999999999999999999972 221
Q ss_pred CCCCCCCCC----cceecceeeeEEeCChH
Q 018905 277 SRPFDCGRD----GFVIGEGSGVLVLEELE 302 (349)
Q Consensus 277 ~~pf~~~~~----G~~~gEGAaalvL~~~~ 302 (349)
..|+|.+++ ++++||||+++||++.+
T Consensus 180 ~~~~d~~~~~~~~~~lfGDGA~A~vL~~~~ 209 (382)
T 1u0m_A 180 YQPTDLGVGSLLCNGLFGDGIAAAVVRGRG 209 (382)
T ss_dssp CCTTCCSHHHHHHHHHBCEEEEEEEEETTT
T ss_pred cCcccCCHHHhhccchhcCCcEEEEEeccC
Confidence 123443333 89999999999999764
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-18 Score=160.46 Aligned_cols=211 Identities=14% Similarity=0.061 Sum_probs=139.1
Q ss_pred ceEEEeeceeCCCCC-CHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC-
Q 018905 40 RVVVTGIGMVTPLGC-GAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW- 117 (349)
Q Consensus 40 ~v~ItG~g~~~p~g~-~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~- 117 (349)
+++|+|+|+.+|... +.+++|+.+....+. +.+..+|....+. ..+...+. .... ...||+.+|
T Consensus 13 ~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~i~~-------~~Gi~~R~--~~~~---~~~~~~~~~~ 78 (374)
T 2h84_A 13 NSFVLGIGISVPGEPISQQSLKDSISNDFSD--KAETNEKVKRIFE-------QSQIKTRH--LVRD---YTKPENSIKF 78 (374)
T ss_dssp CCEEEEEEEECSSSCEEHHHHHHHHHHHSCS--CHHHHHHHHHHHH-------TTCCCEEC--CSSC---TTSGGGCGGG
T ss_pred CeEEEEEEEeCCCcccCHHHHHHHHHHhhcc--ChHHHHHHHHHHH-------hCCcCcce--eecC---cccccccccc
Confidence 599999999999876 789999877543210 0000011000000 00111110 0111 113555555
Q ss_pred CCchhhhcc-----CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchh
Q 018905 118 LNSKDHRSI-----ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIP 192 (349)
Q Consensus 118 i~~~~~~~~-----~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
+++.+...+ ++..+|+++|+.+||+++|+++++++ ++++++..+. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~la~~Aa~~al~~ag~~~~~id-----~vi~~t~~~~----------------------~~- 130 (374)
T 2h84_A 79 RHLETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDIT-----HIVSVTSTGI----------------------II- 130 (374)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-----EEEEEESSCC----------------------CS-
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeeCCC----------------------CC-
Confidence 444444444 78899999999999999999998887 8888885421 01
Q ss_pred hhhhhHHHHHHHHHcCCCC--Ceeecc-cchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhcccccccc
Q 018905 193 RILINMASGHVSMKYGFQG--PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKY 269 (349)
Q Consensus 193 ~~~~~~~a~~ia~~lgl~G--p~~~v~-~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~ 269 (349)
+ ..+.+|+..||+++ |++.|. ++|+|++.||..|+++|++|.+|.+||+|+|.+. ...
T Consensus 131 ---p-~~a~~v~~~lGl~~~~~~~~v~~~aCss~~~al~~A~~~i~~g~~~~vLv~g~e~~s-~~~-------------- 191 (374)
T 2h84_A 131 ---P-DVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCS-LHF-------------- 191 (374)
T ss_dssp ---S-CHHHHHHHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHTTCTTCEEEEEEEECCG-GGC--------------
T ss_pred ---C-cHHHHHHHHcCcCCCCceEEecCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEEecc-hhh--------------
Confidence 1 25678999999987 899996 8999999999999999999999999999999832 210
Q ss_pred CCCCCCCCCCCCCC--CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEee
Q 018905 270 NGTPQEASRPFDCG--RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMS 321 (349)
Q Consensus 270 ~~~~~~~~~pf~~~--~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~ 321 (349)
..|.+.+ ..++++||||+|+||++.+.+..+ .++ +|.+.+..
T Consensus 192 -------~~~~dr~~~~~~~lfGDGA~A~vL~~~~~~~~~--~~~-~l~~~g~~ 235 (374)
T 2h84_A 192 -------SNTDGGDQMVASSIFADGSAAYIIGCNPRIEET--PLY-EVMCSINR 235 (374)
T ss_dssp -------CCSSSHHHHHHHHHBCCEEEEEEEESSCCTTCC--CCE-EEEEEEEE
T ss_pred -------cCCCCHHHHhhhhhhccCcEEEEEecCCCcccC--Cce-eEEeeeeE
Confidence 0111211 137899999999999987655322 234 66666553
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-19 Score=163.87 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
+..+|+++|+++||+++|+++++++ +|++|+..++. .. + ..+.+++..+
T Consensus 50 ~~~~l~~~a~~~al~~ag~~~~~id-----~vi~~~~~~~~---------------------~~----~-~~a~~v~~~l 98 (313)
T 1zow_A 50 DTSDLAYEASVKAIADAGIQPEDID-----MIIVATATGDM---------------------PF----P-TVANMLQERL 98 (313)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSSCSC---------------------SS----S-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCC---------------------CC----C-cHHHHHHHHh
Confidence 4688999999999999999988877 89999865421 01 1 2467899999
Q ss_pred CCC-CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 208 GFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 208 gl~-Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
|++ +|+++|+++|+|++.||..|+++|++|++|.+||+|+|.+ +.. .+|++. .+|
T Consensus 99 gl~~~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vLv~g~e~~-s~~----------------------~~~~d~-~~~ 154 (313)
T 1zow_A 99 GTGKVASMDQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKL-SKI----------------------TDLTDR-STA 154 (313)
T ss_dssp TCCSCCEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEEG-GGT----------------------CCTTCH-HHH
T ss_pred CCCCCcEEEECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEccc-ccc----------------------cCcccc-cce
Confidence 998 5999999999999999999999999999999999999972 211 123432 258
Q ss_pred ceecceeeeEEeCChHHHHhcCCeEeEE-EEeEEeeCCCCCCCCC----CCCc--------HHHHHHHHHHHHHh
Q 018905 287 FVIGEGSGVLVLEELEHAKKRGAKIYAE-VRGYGMSGDAHHITQP----HIDG--------KGAILAMTRALKQA 348 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~~A~~~g~~~~a~-i~g~~~~~d~~~~~~p----~~~g--------~~~~~a~~~Al~~A 348 (349)
+++||||+++||++.+. +.++++. +.+.+...+..++..| ..++ ..+.++++++|++|
T Consensus 155 ~~~gdGa~A~vl~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~a 225 (313)
T 1zow_A 155 VLFGDGAGAVIIGEVSE----GRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKA 225 (313)
T ss_dssp TTBCEEEEEEEEEECST----TCEEEEEEEEECGGGGGGEEECTTTCCEEECHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeccceEEEEEEecCC----CCceeEEEEEEcCCCcCeEEecCCCCeeEeccHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999997653 3455543 3333333332222221 1123 25677888888865
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=159.21 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
++..+|+++|+++||+++|+ ++++ .|++++..+.. .. + ..+.+|+..
T Consensus 51 ~~~~~la~~Aa~~al~~ag~--~~id-----~vi~~t~~~~~---------------------~~----p-~~a~~v~~~ 97 (331)
T 2x3e_A 51 LGSGDLALRAASAALASAGL--ERVD-----AVVLATSTGDF---------------------CC----P-ATAPRVAAR 97 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHTC--SCCS-----EEEEECSSCSE---------------------EE----S-CSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCc--ccCC-----EEEEEeCCCCC---------------------CC----C-hHHHHHHHH
Confidence 56789999999999999999 6676 88888864321 11 1 246789999
Q ss_pred cCCC-CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCC
Q 018905 207 YGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (349)
Q Consensus 207 lgl~-Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~ 285 (349)
||++ +|+++|+++|+|++.||..|+++|++|.+|.+||+|+|. .++.. . ++...+
T Consensus 98 lgl~~~~~~~v~~aCas~~~Al~~A~~~i~~g~~~~vLv~g~e~-~s~~~----------~-------------~~d~~~ 153 (331)
T 2x3e_A 98 LGLVGALAFDLSAAATGFVYGLASVGSLISAGLADSALLVGVDT-FSHTL----------D-------------PADRST 153 (331)
T ss_dssp TTCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-GGGGS----------C-------------TTCHHH
T ss_pred hCCCCCcEEEEcCcChHHHHHHHHHHHHHHcCCCCEEEEEEeec-cccCC----------C-------------cccccc
Confidence 9998 799999999999999999999999999999999999997 33221 0 111235
Q ss_pred cceecceeeeEEeCChHHHHhcCCeEeEE
Q 018905 286 GFVIGEGSGVLVLEELEHAKKRGAKIYAE 314 (349)
Q Consensus 286 G~~~gEGAaalvL~~~~~A~~~g~~~~a~ 314 (349)
|+++||||+++||++.++| ++.++++.
T Consensus 154 ~~~~GdGA~A~vL~~~~~a--~~~~i~~~ 180 (331)
T 2x3e_A 154 RALFGDGAGAVVLRAGDAE--EEGALLAF 180 (331)
T ss_dssp HHHBCCEEEEEEEEEECTT--STTBEEEE
T ss_pred ceeeccccEEEEEEecCCC--CCCceEEE
Confidence 8999999999999987654 34455543
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-18 Score=160.84 Aligned_cols=122 Identities=22% Similarity=0.233 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
.+..+|+++|+++||+++|+++++++ +|++|+..+++. . ...+.+|+..
T Consensus 59 ~~~~~la~~A~~~al~~ag~~~~~id-----~vi~~t~~~~~~---------------------~-----~~~a~~v~~~ 107 (335)
T 1u6e_A 59 ESAASMATEACRRALSNAGLSAADID-----GVIVTTNTHFLQ---------------------T-----PPAAPMVAAS 107 (335)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCCCS---------------------S-----SCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEcCCCCCC---------------------C-----ChHHHHHHHH
Confidence 45789999999999999999988887 899998654320 0 1356789999
Q ss_pred cCCC-CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCC
Q 018905 207 YGFQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 285 (349)
Q Consensus 207 lgl~-Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~ 285 (349)
||++ +|+++|+++|+|++.||..|+++|++|.+|.+||+|+|.+. + ...|++ ..+
T Consensus 108 lgl~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLv~g~e~~s-~----------------------~~~~~d-~~~ 163 (335)
T 1u6e_A 108 LGAKGILGFDLSAGAAGFGYALGAAADMIRGGGAATMLVVGTEKLS-P----------------------TIDMYD-RGN 163 (335)
T ss_dssp HTCTTSEEEEEECGGGHHHHHHHHHHHHHHHTSCSSEEEEEEEECG-G----------------------GCCTTC-TTT
T ss_pred hCCCCCcEeeeccccHHHHHHHHHHHHHHHcCCCCEEEEEEEcccc-c----------------------ccCccc-ccc
Confidence 9998 59999999999999999999999999999999999999732 1 122343 347
Q ss_pred cceecceeeeEEeCChHH
Q 018905 286 GFVIGEGSGVLVLEELEH 303 (349)
Q Consensus 286 G~~~gEGAaalvL~~~~~ 303 (349)
++++||||+++||++.+.
T Consensus 164 ~~~~gDGA~A~vl~~~~~ 181 (335)
T 1u6e_A 164 CFIFADGAAAVVVGETPF 181 (335)
T ss_dssp TTTBCEEEEEEEEEECSS
T ss_pred ceEeccccEEEEEEecCC
Confidence 899999999999997653
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-16 Score=147.59 Aligned_cols=135 Identities=20% Similarity=0.157 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+++|+++++++ .|++++...+. .. ...+.+|+..||
T Consensus 68 ~~~La~~Aa~~al~~ag~~~~~Id-----~vi~~t~~~~~---------------------~~-----p~~a~~v~~~lG 116 (345)
T 3s21_A 68 ASDAATQAARKALIDANIGIEKIG-----LLINTSVSRDY---------------------LE-----PSTASIVSGNLG 116 (345)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEECCSCCSC---------------------SS-----SCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCC---------------------CC-----ChHHHHHHHHhC
Confidence 678999999999999999999887 89998854321 00 134678999999
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
+. .|.+.|+++|+|++.||..|.++|++|.++.+||+|+|.+..... ..+. +..+ +.+.+++|+.+..+
T Consensus 117 l~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~-~~~~--~~~~------~~~~~~~f~~~~~~ 187 (345)
T 3s21_A 117 VSDHCMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYE-KTLE--RMTS------PDVTEEEFRNELAA 187 (345)
T ss_dssp CCTTCEEEECCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCHHHHH-HHHH--HHTC------TTCCHHHHHHHHGG
T ss_pred CCCCceEEeECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccchhhc-cccc--cccC------Cccchhhhhhhccc
Confidence 95 699999999999999999999999999999999999998433321 1111 1222 23467788888889
Q ss_pred ceecceeeeEEeCChHH
Q 018905 287 FVIGEGSGVLVLEELEH 303 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~~ 303 (349)
+++||||+++||++.+.
T Consensus 188 ~~~GdGA~A~vl~~~~~ 204 (345)
T 3s21_A 188 LTLGCGAAAMVMARSEL 204 (345)
T ss_dssp GGBCCEEEEEEEEEGGG
T ss_pred eeeccceeEEEEecCCC
Confidence 99999999999998653
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=149.57 Aligned_cols=165 Identities=14% Similarity=0.128 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
....+|+++|+.+||+++|+++++++ .+++++..+. . .+ ..+.+|+..
T Consensus 111 ~~~~~la~~Aa~~aL~~agl~~~~Id-----~vi~~t~~~~----------------------~----~p-~~a~~v~~~ 158 (393)
T 1ted_A 111 EHAVPLAVDVSKRALAGLPYRAAEIG-----LLVLATSTGF----------------------I----AP-GVDVAIVKE 158 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGEE-----EEEEEESSCC----------------------C----SS-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEeCCC----------------------c----cC-hHHHHHHHH
Confidence 45788999999999999999887776 6777875321 0 11 256789999
Q ss_pred cCCCCC--eeec-ccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCC
Q 018905 207 YGFQGP--NHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (349)
Q Consensus 207 lgl~Gp--~~~v-~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~ 283 (349)
||++++ .+.+ +++|+|++.||..|.++|++|.+|.+||+|+|.+. ... . |+.+
T Consensus 159 lGl~~~~~~~~v~~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s-~~~----------~-------------~~~~ 214 (393)
T 1ted_A 159 LGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCS-VNA----------V-------------FADD 214 (393)
T ss_dssp HTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECG-GGC----------C-------------CCSS
T ss_pred cCcCCCcceeEeccchhHHHHHHHHHHHHHHHcCCCCEEEEEEEEecc-ccC----------C-------------CCCC
Confidence 999885 5777 89999999999999999999999999999999732 110 0 2334
Q ss_pred CC----cceecceeeeEEeCChHHHHhcCCeEeEEEEeEEee--CCCCCC------------C-C---CCCCcHHHHHHH
Q 018905 284 RD----GFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMS--GDAHHI------------T-Q---PHIDGKGAILAM 341 (349)
Q Consensus 284 ~~----G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~--~d~~~~------------~-~---p~~~g~~~~~a~ 341 (349)
++ ++++||||+|+||++.+.+..++. .+++|.+.+.. .|+.+. . . +......+.+++
T Consensus 215 r~~~~~~~lfGDGA~A~vL~~~~~~~~~~~-~~~~i~~~~~~~~~d~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i 293 (393)
T 1ted_A 215 INDVVIHSLFGDGCAALVIGASQVQEKLEP-GKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVV 293 (393)
T ss_dssp HHHHHHHHHBCEEEEEEEEEEECTTSCCCT-TCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhcCccEEEEEecCCCccccCc-ceeeeeccceEEcCCchhhccceecCCCeEEecCchHHHHHHHHHHHHH
Confidence 43 889999999999997654422233 45678887654 554321 0 0 111124566788
Q ss_pred HHHHHHh
Q 018905 342 TRALKQA 348 (349)
Q Consensus 342 ~~Al~~A 348 (349)
+++|+++
T Consensus 294 ~~aL~~a 300 (393)
T 1ted_A 294 TEMLWDN 300 (393)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8888764
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-16 Score=151.00 Aligned_cols=201 Identities=17% Similarity=0.111 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+|||+++++++ ..-.|+++....... ............++..++..+|
T Consensus 42 ~~dL~a~Ai~~AL~dAGl~p~~Vd-~vI~g~~~~~~~~~~------------------~~~~~~~g~~~~~~~~va~~lG 102 (520)
T 4egv_A 42 SVELATEAAKAALHDCGADADTVA-RAIDTVAGTRQFEIS------------------GPASAPLGVSSNYPRSVARNIG 102 (520)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHH-HHCCEEEECCC--------------------------------CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCcCHHHcc-eEEEEEeeccccccc------------------chhhhhhccccCHHHHHHHHcC
Confidence 356899999999999999987654 222355544322110 0001111223345677889999
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHh------------------cccccc--
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCK------------------SRALTT-- 267 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~------------------~~~l~~-- 267 (349)
+.+ +.++++.+|+|++.+|.+|++.|++|++|++|+||+|++.+......... ++...+
T Consensus 103 l~~~~~~~~~~~caSg~~av~~AA~aI~aG~advvlAgG~EsMS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 182 (520)
T 4egv_A 103 ADPAHAVLEVIGGQSPQHLATEFGGKIAAGENDVVLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGIFDEY 182 (520)
T ss_dssp CCCSEEEECCSSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECCC----------------------------------CT
T ss_pred CCCceEEEecCCCHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccccccccccccCccccccccccccccccchhHHHH
Confidence 987 78889999999999999999999999999999999999654221100000 000000
Q ss_pred --ccC------------------------------------------CCCCCCC--------------------CCCCCC
Q 018905 268 --KYN------------------------------------------GTPQEAS--------------------RPFDCG 283 (349)
Q Consensus 268 --~~~------------------------------------------~~~~~~~--------------------~pf~~~ 283 (349)
.+. .+|+... .|+..-
T Consensus 183 ~~~~g~~~~~~~~~~~~s~~~a~~g~~~~~f~~eia~v~v~~~~~a~~np~a~~r~~~t~E~l~~l~p~~r~i~~p~~ta 262 (520)
T 4egv_A 183 TIRHGLIGAPVQYGLLENARRARLGLSVADYRLAMAELFAPFSKVAAKNPYSSAPTERSVEELLTVTASNRMIVDPYPRL 262 (520)
T ss_dssp TGGGTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCTTSSSCCCCCHHHHHSCCSSSCEEETTEEGG
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHccccchhhhheeEEEEecccccccCccccccCCCCHHHhcccCcccccccCCcccc
Confidence 000 0111111 122222
Q ss_pred CCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCC--CCCCCCC-CcHHHHHHHHHHHHHh
Q 018905 284 RDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAH--HITQPHI-DGKGAILAMTRALKQA 348 (349)
Q Consensus 284 ~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~--~~~~p~~-~g~~~~~a~~~Al~~A 348 (349)
.|...++|||+++||++++.|++.|.+++++|.+++.+.... ....|+. .+.++..++++||++|
T Consensus 263 ~nas~isDGAAAvVL~S~e~A~~lGl~p~a~I~~~a~a~~~~~~~~~~~~~~~~~~~~~a~~~al~~a 330 (520)
T 4egv_A 263 MVARDQVNQGAALLMMSVESARKLGVPEEKWVYLRGHADMKEPKLLERADIGASPASVTAVNEALRVA 330 (520)
T ss_dssp GCC--CCCEEEEEEEEEHHHHHHHTCCGGGCEEEEEEEEEECCCGGGCSCTTCCHHHHHHHHHHHHHH
T ss_pred cccCCCCcceEEEEEeeHHHHHHcCCCCceEEEEEEEeccCCcccccccccccChHHHHHHHHHHHHh
Confidence 355568999999999999999999999998888877755322 2233433 2578899999999976
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=140.98 Aligned_cols=172 Identities=17% Similarity=0.238 Sum_probs=121.5
Q ss_pred ceEEEeeceeCCCCC-CHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCC
Q 018905 40 RVVVTGIGMVTPLGC-GAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (349)
Q Consensus 40 ~v~ItG~g~~~p~g~-~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i 118 (349)
++.|+|+|..+|... +.+++++.+... ++. . ..+|..+. . +...+ ....
T Consensus 11 ~v~I~g~g~~lP~~~v~~~~l~~~l~~~--~~~-~-~~~~i~~r---------t-gi~~r--~~~~-------------- 60 (333)
T 4dfe_A 11 YSRVLGTGSYLPPNRVTNQDLAKRLAEQ--GIE-T-SDEWIVAR---------T-GIHAR--YFAE-------------- 60 (333)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHHHHC-----CC-C-CHHHHHHH---------H-CCSEE--EECC--------------
T ss_pred ceEEEEEEEECCCcEEcHHHHHHHhccc--cCC-C-CHHHhHHh---------c-CceEE--EEcC--------------
Confidence 699999999999865 889999886431 110 0 01121100 0 11111 0000
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhH
Q 018905 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
.-.....|+++|+++||+++|+++++++ .|++++..+... . ..
T Consensus 61 ------~~~~~~~la~~Aa~~al~~ag~~~~~Id-----~vi~~t~~~~~~-------------------------~-p~ 103 (333)
T 4dfe_A 61 ------PDVTTSDLAFIASQRAIEAADIDPQSID-----LIIVATSTPDFV-------------------------F-PS 103 (333)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSSCSSS-------------------------B-SC
T ss_pred ------CCCCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCCC-------------------------C-Cc
Confidence 0123678999999999999999998887 899998653220 0 13
Q ss_pred HHHHHHHHcCC--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCC
Q 018905 199 ASGHVSMKYGF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (349)
Q Consensus 199 ~a~~ia~~lgl--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (349)
.+.+|+..||+ +.|++.|+++|+|++.||..|+++|++|.++.+||+|+|.+.... .
T Consensus 104 ~a~~v~~~lgl~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~---------- 162 (333)
T 4dfe_A 104 TACLLQNKLGIRNHGAAFDVQAVCSGFAYAVATADSFIRSGQHRTALVIGAETFSRIL-----------D---------- 162 (333)
T ss_dssp HHHHHHHHTTCCSCCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGGC-----------C----------
T ss_pred HHHHHHHHhCCCCCCcEEEeCcccHHHHHHHHHHHHHHHcCCCCEEEEEEeecccccc-----------C----------
Confidence 46789999999 669999999999999999999999999999999999999732111 0
Q ss_pred CCCCCCCCCcceecceeeeEEeCChH
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~ 302 (349)
++.+..++++||||+|+||++.+
T Consensus 163 ---~~d~~~~~lfGDGA~A~vl~~~~ 185 (333)
T 4dfe_A 163 ---FKDRTTCVLFGDGAGAVILQASD 185 (333)
T ss_dssp ---TTCTTTTTTBCEEEEEEEEEEES
T ss_pred ---cccccceeeeccccEEEEEEEcC
Confidence 12233578899999999999754
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.1e-15 Score=139.61 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=102.8
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
+..+..........|+.+|+.+||+++|+++++++ .+++++..+. . ..
T Consensus 87 ~~~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~~Id-----~li~~t~~~~----------------------~-----~p 134 (387)
T 3a5r_A 87 LNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKIT-----HLIVCCLAGV----------------------D-----MP 134 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-----EEEEEESSCC----------------------E-----ES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCC----------------------C-----CC
Confidence 44455555677889999999999999999998887 8888875421 0 11
Q ss_pred HHHHHHHHHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCC
Q 018905 198 MASGHVSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ 274 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (349)
..+.+|+..||+.++ .+.|+++|+|++.||..|.++|++|.++.|||+|+|.+...
T Consensus 135 ~~a~~v~~~lGl~~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~--------------------- 193 (387)
T 3a5r_A 135 GADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTTC--------------------- 193 (387)
T ss_dssp CHHHHHHHHTTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECCTTT---------------------
T ss_pred cHHHHHHHHcCcCCCcceeeeEccccHHHHHHHHHHHHHHHhCCCCEEEEEEEeccchh---------------------
Confidence 356789999999875 78899999999999999999999999999999999973221
Q ss_pred CCCCCCC----CCCCcceecceeeeEEeCChH
Q 018905 275 EASRPFD----CGRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 275 ~~~~pf~----~~~~G~~~gEGAaalvL~~~~ 302 (349)
...|++ ....++++||||+|+||++.+
T Consensus 194 -~~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~ 224 (387)
T 3a5r_A 194 -FRGPSETHLDSMIGQAILGDGAAAVIVGADP 224 (387)
T ss_dssp -CCCCCSSCCSSTTHHHHBCCEEEEEEEESSC
T ss_pred -hcCCCccchhhccccceeccceeEEEEecCC
Confidence 112222 223578999999999998754
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=134.99 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+++|+++++++ .+++++...+. . .+ ..+.+++..+|
T Consensus 52 ~~~La~~Aa~~aL~~ag~~~~~Id-----~li~~t~~~~~---------------------~----~p-~~a~~v~~~lG 100 (321)
T 3il6_A 52 TSDLCHQVAKQLLEKSGKQASEID-----FILVATVTPDF---------------------N----MP-SVACQVQGAIG 100 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSSCSC---------------------S----SS-CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCc---------------------C----CC-cHHHHHHHHcC
Confidence 678999999999999999998887 89999864321 0 11 25678999999
Q ss_pred CC-CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~-Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
+. .|.+.|+.+|+|++.||..|..+|++|.++.+||+|+|.+ +... . +......+
T Consensus 101 l~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~-s~~~----------~-------------~~dr~~~~ 156 (321)
T 3il6_A 101 ATEAFAFDISAACSGFVYALSMAEKLVLSGRYQTGLVIGGETF-SKML----------D-------------WTDRSTAV 156 (321)
T ss_dssp CTTCEEEEECCGGGHHHHHHHHHHHHHHTSSCCCEEEEEEECG-GGGS----------C-------------TTCTTTGG
T ss_pred CCCceEEEeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEEccc-cccC----------C-------------ccccccce
Confidence 97 4999999999999999999999999999999999999983 2210 0 11112457
Q ss_pred eecceeeeEEeCChH
Q 018905 288 VIGEGSGVLVLEELE 302 (349)
Q Consensus 288 ~~gEGAaalvL~~~~ 302 (349)
++||||+|+||++.+
T Consensus 157 lfGDGA~A~vl~~~~ 171 (321)
T 3il6_A 157 LFGDGAAGVLIEAAE 171 (321)
T ss_dssp GBCCEEEEEEEEEES
T ss_pred eeccccEEEEEEEcC
Confidence 899999999999754
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-14 Score=132.65 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
.....|+.+|+++||+++|+++++|+ .|++++..++. . .+ ..+.+|+..
T Consensus 115 ~~~~~La~~Aa~~AL~~agi~~~dId-----~vi~~t~t~~~---------------------~----~p-~~a~~v~~~ 163 (392)
T 3led_A 115 SILAEMAVTAAEQAIERWGKPRERIG-----AVLCACSNMQR---------------------A----YP-AMAIEVQNA 163 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCGGGEE-----EEEEESSCCSC---------------------S----BS-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecCCCC---------------------C----cc-HHHHHHHHH
Confidence 35678999999999999999988887 88888864321 1 11 256788899
Q ss_pred cCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 207 YGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 207 lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
||++.|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+ +.. + .+.| ....
T Consensus 164 LGl~~~~~dv~~aC~g~~~aL~~A~~~i~~g~~~~vLvvg~E~~-S~~----------~------------d~~d-r~t~ 219 (392)
T 3led_A 164 LGLGGFAFDMNVACSSATFGLKTAADFVGGGSVDAVLMVNPEIC-SGH----------L------------NFRD-RDSH 219 (392)
T ss_dssp TTCCSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG-GGG----------C------------CTTC-TTTT
T ss_pred hCCCCeEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEeehhc-CCc----------C------------CcCc-ccCC
Confidence 99988999999999999999999999999999999999999973 211 0 0111 1246
Q ss_pred ceecceeeeEEeCChH
Q 018905 287 FVIGEGSGVLVLEELE 302 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~ 302 (349)
+++||||+|+||++.+
T Consensus 220 ~lFGDGA~A~vl~~~~ 235 (392)
T 3led_A 220 FIFGDVATAAIVERAD 235 (392)
T ss_dssp TTBCEEEEEEEEEEGG
T ss_pred cccccccEEEEEEecC
Confidence 7899999999998754
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=138.74 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=102.1
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHH
Q 018905 121 KDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMAS 200 (349)
Q Consensus 121 ~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 200 (349)
+.....+....|+.+|+.+||+++|+++++++ .++++++.+. . .+ ..+
T Consensus 117 r~~~~~~~~~~La~~Aa~~AL~~agl~~~~Id-----~li~~t~~~~----------------------~----~p-~~a 164 (413)
T 1xes_A 117 RQAMLAMEVPRLAKEAAEKAIQEWGQSKSGIT-----HLIFCSTTTP----------------------D----LP-GAD 164 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-----EEEEEESCCC----------------------E----ES-CHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEeCCC----------------------c----cc-hHH
Confidence 33444567889999999999999999998887 8888885421 0 11 246
Q ss_pred HHHHHHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 201 GHVSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 201 ~~ia~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.+|+..||+.++ .+.|..+|+|++.||..|..+|++|.++.+||+|+|.+...+ .. +. .
T Consensus 165 ~~v~~~lGl~~~~~~~~~v~~aCas~~~AL~~A~~~i~~G~~~~vLvvg~E~~s~~~----------~~------~~--d 226 (413)
T 1xes_A 165 FEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTF----------RG------PS--E 226 (413)
T ss_dssp HHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCCEEEEEEECTTTTC----------CC------CC--T
T ss_pred HHHHHHcCcCCccchhceecCccHHHHHHHHHHHHHHHcCCCCEEEEEEehhhhhhh----------cC------CC--c
Confidence 789999999874 789999999999999999999999999999999999733211 00 11 1
Q ss_pred CCCCCCCCcceecceeeeEEeCChH
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~ 302 (349)
++|+....++++||||+|+||++.+
T Consensus 227 ~~~~~~~~~~lfGDGA~A~vl~~~~ 251 (413)
T 1xes_A 227 THLDSLVGQALFGDGASALIVGADP 251 (413)
T ss_dssp TCHHHHHHHHHBCCEEEEEEEESSC
T ss_pred cchhhcccceeEecccEEEEEecCC
Confidence 2344445688999999999998754
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-14 Score=133.53 Aligned_cols=175 Identities=10% Similarity=0.074 Sum_probs=118.4
Q ss_pred CCCCCCCceEEEeeceeCCCCC-CHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCC
Q 018905 33 PPLSPLRRVVVTGIGMVTPLGC-GAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGE 111 (349)
Q Consensus 33 ~~~~~~~~v~ItG~g~~~p~g~-~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 111 (349)
+|.++.+++.|+|+|...|.-. +.+++.+.+. +. + .+|..+ ..+...+. ..+
T Consensus 23 ~~~~~~~~v~I~gig~~lP~~~v~n~~l~~~~~-~~------~-~~~i~~----------~tGI~~R~--~a~------- 75 (365)
T 3gwa_A 23 TPAAHPPRAAIADIAGHLPEQVLTNDVLAQLYP-DW------P-AEKILA----------KTGIRERR--IAA------- 75 (365)
T ss_dssp ------CEEEEEEEEEECCSEEEEHHHHHHHCT-TC------C-HHHHHH----------HHCCCEEE--ECC-------
T ss_pred CccceeccEEEEEEEEeCCCcEEcHHHHHHHcc-CC------C-HHHHHH----------hcCccEEE--ECC-------
Confidence 4455578899999999999855 7777776541 11 1 111100 00111111 111
Q ss_pred CCCCCCCCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcch
Q 018905 112 FNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFI 191 (349)
Q Consensus 112 fd~~~~i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
+ -.....|+.+|+.+||+++|+++++++ .|++++..++. .
T Consensus 76 --------~-----~~~~~~La~~Aa~~aL~~ag~~~~~Id-----~vi~~t~~~~~---------------------~- 115 (365)
T 3gwa_A 76 --------P-----RETAADLAYEAARKLFAQGAVGADQVD-----FVILCTQAPDY---------------------V- 115 (365)
T ss_dssp --------T-----TCCHHHHHHHHHHHHHHTTSCCGGGCC-----EEEEEESSCSC---------------------S-
T ss_pred --------C-----CCCHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCC---------------------C-
Confidence 0 023578999999999999999999888 89998854321 1
Q ss_pred hhhhhhHHHHHHHHHcCCC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhcccccccc
Q 018905 192 PRILINMASGHVSMKYGFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKY 269 (349)
Q Consensus 192 ~~~~~~~~a~~ia~~lgl~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~ 269 (349)
.+ ..+.+++..+|+. .|.+.|+.+|+|++.||..|..+|++|.++.+||+|+|.+.....
T Consensus 116 ---~p-~~a~~v~~~lGl~~~~~~~~v~~~C~s~~~Al~~A~~~i~~g~~~~vLvvg~e~~s~~~~-------------- 177 (365)
T 3gwa_A 116 ---LP-TSACMLQHRLGIPTHAGALDVNLGCSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYLH-------------- 177 (365)
T ss_dssp ---BS-CHHHHHHHHTTCCTTSEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGSC--------------
T ss_pred ---CC-cHHHHHHHHcCCCCCceEEEecccChHHHHHHHHHHHHHHcCCCCEEEEEEEchhhccCC--------------
Confidence 11 2467889999997 589999999999999999999999999999999999998332210
Q ss_pred CCCCCCCCCCCCCCCCcceecceeeeEEeCChH
Q 018905 270 NGTPQEASRPFDCGRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 270 ~~~~~~~~~pf~~~~~G~~~gEGAaalvL~~~~ 302 (349)
+ -| ....+++||||+|+||++.+
T Consensus 178 ---~------~d-r~~~~lfGDGAaA~vl~~~~ 200 (365)
T 3gwa_A 178 ---P------LD-KSVRTLFGDGASATAVIAEH 200 (365)
T ss_dssp ---T------TC-HHHHTTBCCEEEEEEEEEEC
T ss_pred ---c------cc-ccccccccceeEEEEEEecC
Confidence 0 00 11246799999999998753
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=126.60 Aligned_cols=121 Identities=18% Similarity=0.084 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
....|+.+|+.+||+++|+++++|+ .|++++.... .+... .++.+++..+
T Consensus 53 ~~~~La~~Aa~~aL~~ag~~~~dId-----~vi~~t~~~~-------------------~~d~~------~~a~~v~~~l 102 (357)
T 3s3l_A 53 APPRMAARAARAALGRGDVDPADVS-----LVLHSSLWFQ-------------------GIDLW------PAASYVAHEA 102 (357)
T ss_dssp SHHHHHHHHHHHHHHHTTCCGGGEE-----EEEEECSSCC-------------------SSSSS------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCC-------------------Ccccc------cHHHHHHHHh
Confidence 3678999999999999999988887 7888885310 01000 2367788889
Q ss_pred CCCC-CeeecccchhhHHHHHHHHHHHHHcCCCC--EEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCC
Q 018905 208 GFQG-PNHAAVTACATGAHSIGDAARMIQFGDSD--VMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (349)
Q Consensus 208 gl~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d--~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~ 284 (349)
|+.. |.+.|+.+|+|++.||..|..+|++|.++ .+||+|+|.+..+. + ..++ ++
T Consensus 103 G~~~~~~~~v~~aC~~~~~al~~A~~~i~sg~~~~~~vLvvg~e~~s~~~----------~------------~~~~-~~ 159 (357)
T 3s3l_A 103 VGRHVPAFGLAQRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPR----------I------------DRWN-SV 159 (357)
T ss_dssp TCSSSCEEEEECGGGHHHHHHHHHHHHHHTTSSSSSEEEEEEEECCCTTT----------C------------CTTT-SS
T ss_pred CCCCCcEEEEcCccHHHHHHHHHHHHHHHcCCCCCCEEEEEEEecccccc----------c------------cccc-cc
Confidence 9965 89999999999999999999999999999 99999999843211 0 0111 12
Q ss_pred CcceecceeeeEEeCCh
Q 018905 285 DGFVIGEGSGVLVLEEL 301 (349)
Q Consensus 285 ~G~~~gEGAaalvL~~~ 301 (349)
.++++||||+|+||++.
T Consensus 160 ~~~lfGDGA~A~vl~~~ 176 (357)
T 3s3l_A 160 DVTMYGDGAAALVLSTR 176 (357)
T ss_dssp SSCCBCCEEEEEEEESS
T ss_pred CCcccccccEEEEEecC
Confidence 57889999999999874
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-14 Score=132.85 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|++.|+.+||++ +++++++ .+++|+..+.. . . ...+..|+..||
T Consensus 51 ~~~la~~Aa~~aL~~--~~~~~Id-----~li~~t~~~~~-----------------~--------~-p~~a~~v~~~lG 97 (396)
T 1xpm_A 51 IVSMGANAAKDIITD--EDKKKIG-----MVIVATESAVD-----------------A--------A-KAAAVQIHNLLG 97 (396)
T ss_dssp HHHHHHHHHHTTCCH--HHHHHEE-----EEEEECSSCSB-----------------S--------S-SCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc--CCHHHCC-----EEEEEeCCCCC-----------------C--------C-CCHHHHHHHHhC
Confidence 578999999999987 4444443 46678754321 0 1 135678999999
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
+.+ |++.|.++|+|++.||..|.++|++|.++.+||+|+|. .. .. ++ ..++
T Consensus 98 l~~~~~~~~v~~aC~sg~~Al~~A~~~I~sg~~~~vLvvg~e~-s~-~~------------------------~~-~~~~ 150 (396)
T 1xpm_A 98 IQPFARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDT-AR-YG------------------------LN-SGGE 150 (396)
T ss_dssp CCSSCEEEEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEE-EC-CC------------------------TT-CSSG
T ss_pred CCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCEEEEEeehh-hc-cc------------------------cC-CCCC
Confidence 974 99999999999999999999999999999999999995 11 10 01 1358
Q ss_pred ceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeC-CCCCCCCCCC------CcHH--------HHHHHHHHHHHh
Q 018905 287 FVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSG-DAHHITQPHI------DGKG--------AILAMTRALKQA 348 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~-d~~~~~~p~~------~g~~--------~~~a~~~Al~~A 348 (349)
+++||||+|+||++. ..+++...+.+... +..++..|++ +|.. +..+++++|+++
T Consensus 151 ~~~GdGA~A~vl~~~-------~~i~~~~~~~g~~~~d~~~~~~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~L~~a 220 (396)
T 1xpm_A 151 PTQGAGAVAMVIAHN-------PSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQ 220 (396)
T ss_dssp GGCEEEEEEEEEEES-------CSSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEeccC-------CceEEEEeccccccceEEEeeccCCCCCeEEEcHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999863 24556555544443 5444444543 4544 566777777654
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-13 Score=128.20 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=97.9
Q ss_pred hhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHH
Q 018905 122 DHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASG 201 (349)
Q Consensus 122 ~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 201 (349)
.....+....|+.+|+.+||+++|+++++|+ .|+++++.+ . . . ...+.
T Consensus 95 ~~~~~~~~~~La~~Aa~~aL~~ag~~~~dId-----~vi~~t~t~-~---------------------~----~-p~~a~ 142 (393)
T 3ov2_A 95 QDIVVEEIPRLAKEAAEKAIKEWGRPKSEIT-----HLVFCSISG-I---------------------D----M-PGADY 142 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCGGGCC-----EEEEEESSC-C---------------------C----B-SCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEEeCC-C---------------------C----C-CCHHH
Confidence 3344456788999999999999999999888 899988643 1 0 1 13567
Q ss_pred HHHHHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 202 HVSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 202 ~ia~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
+|+..||+.+. .+.+..+|++++.||..|..+|++|.++.+||+|+|.+...+ ..
T Consensus 143 ~v~~~LGl~~~~~~~~~v~~~C~g~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~----------------------~~ 200 (393)
T 3ov2_A 143 RLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVVACEITVLSF----------------------RG 200 (393)
T ss_dssp HHHHHHTCCTTSEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECGGGTC----------------------CC
T ss_pred HHHHHcCCCCCcceeeEEcCccHHHHHHHHHHHHHHHcCCCCEEEEEEEeccchhc----------------------cC
Confidence 88999999874 689999999999999999999999999999999999832110 01
Q ss_pred CCCCC----CCcceecceeeeEEeCChH
Q 018905 279 PFDCG----RDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 279 pf~~~----~~G~~~gEGAaalvL~~~~ 302 (349)
|-|.+ ...+++||||+|+||++.+
T Consensus 201 ~~d~~~~~~~~~~lFGDGAaA~vl~~~~ 228 (393)
T 3ov2_A 201 PNEGDFEALAGQAGFGDGAGAVVVGADP 228 (393)
T ss_dssp CCTTCHHHHHHHHHBCCEEEEEEEESSC
T ss_pred CcccchhhhcccccccCccEEEEEEecC
Confidence 11111 2367799999999998754
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=121.31 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+++|+++++++ .|++++..+.. . .+ ..+.+++..+|
T Consensus 58 ~~~La~~Aa~~aL~~ag~~~~~Id-----~vi~~t~~~~~---------------------~----~p-~~a~~v~~~lG 106 (323)
T 3il3_A 58 VATMGFEAAKNAIEAAQINPQDIE-----LIIVATTSHSH---------------------A----YP-SAACQVQGLLN 106 (323)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCC-----EEEEECSCCSC---------------------S----SS-CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCC---------------------C----Cc-cHHHHHHHHhC
Confidence 578999999999999999999887 89999864321 0 11 25678889999
Q ss_pred CC-CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQ-GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~-Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
+. .|.+.|+.+|+|++.||..|..+|++|.++.+||+|+|.+.... . +......+
T Consensus 107 l~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~-------------~~d~~~~~ 162 (323)
T 3il3_A 107 IDDAISFDLAAACTGFVYALSVADQFIRAGKVKKALVIGSDLNSRKL-----------D-------------ETDRSTVV 162 (323)
T ss_dssp CSSCEEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGSC-----------C-------------TTCTTTTT
T ss_pred CCCccEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEEeecccccc-----------C-------------cccccccc
Confidence 95 48999999999999999999999999999999999999732110 0 01112467
Q ss_pred eecceeeeEEeCChH
Q 018905 288 VIGEGSGVLVLEELE 302 (349)
Q Consensus 288 ~~gEGAaalvL~~~~ 302 (349)
++||||+|+||++.+
T Consensus 163 lfGDGA~A~vl~~~~ 177 (323)
T 3il3_A 163 LFGDGAGAVILEASE 177 (323)
T ss_dssp TBCEEEEEEEEEEES
T ss_pred ccccceEEEEEEEcC
Confidence 899999999998753
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-12 Score=120.30 Aligned_cols=127 Identities=11% Similarity=0.093 Sum_probs=97.9
Q ss_pred hhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHH
Q 018905 122 DHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASG 201 (349)
Q Consensus 122 ~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 201 (349)
....++....|+.+|+.+||+++|+++++|+ .|+++++.+ . .. ...+.
T Consensus 89 ~~~~~~~~~~La~~Aa~~AL~~ag~~~~dId-----~li~~t~t~-~---------------------~~-----p~~a~ 136 (387)
T 3oit_A 89 LDIAADAVPELAAEAAKKAIAEWGRPAADIT-----HLVVTTNSG-A---------------------HV-----PGVDF 136 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCGGGCC-----EEEEEESSC-C---------------------EE-----SCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeeCC-C---------------------Cc-----ccHHH
Confidence 3334457888999999999999999999888 899988543 1 11 13567
Q ss_pred HHHHHcCCCCC---eeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 202 HVSMKYGFQGP---NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 202 ~ia~~lgl~Gp---~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
+|+..||+.+. .+.+..+|++++.||..|..+|++|.++.+||+|+|.+...+ ..
T Consensus 137 ~v~~~LGl~~~~~~~~~~~~~C~~~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~----------------------~~ 194 (387)
T 3oit_A 137 RLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLMYF----------------------TG 194 (387)
T ss_dssp HHHHHHTCCTTCEEEEEECCGGGHHHHHHHHHHHHHHSSTTCEEEEEEEECGGGTC----------------------CC
T ss_pred HHHHHhCCCCCcceeeEECchhHHHHHHHHHHHHHHhcCCCCEEEEEEEeccchhc----------------------cC
Confidence 88999999873 689999999999999999999999999999999999832110 00
Q ss_pred CCCCC----CCcceecceeeeEEeCChH
Q 018905 279 PFDCG----RDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 279 pf~~~----~~G~~~gEGAaalvL~~~~ 302 (349)
|-|.+ ...+++||||+|+||++.+
T Consensus 195 ~~d~~~~~~~~~~lFGDGAaA~vl~~~~ 222 (387)
T 3oit_A 195 PDEGCFRTLLVQGLFGDGAAAVIVGADA 222 (387)
T ss_dssp CCSSSCHHHHHHHHBCCEEEEEEEESSC
T ss_pred ccccchHhhhcccccccceEEEEEecCC
Confidence 11111 2367799999999998754
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-12 Score=121.17 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+++|+++++|+ .|+++++. +. . + ...+.+|+..||
T Consensus 110 a~~La~~Aa~~AL~~agi~~~dId-----~li~~t~t-~~---------------------~----~-P~~a~~v~~~LG 157 (465)
T 3e1h_A 110 GVPLAVEASRKAMAEARLVPAQIT-----HMVSTTCT-DS---------------------A----N-PGYDHYVAKELG 157 (465)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSS-CC---------------------C----S-SCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeeC-CC---------------------C----C-CcHHHHHHHHhC
Confidence 458999999999999999999888 89998864 21 0 1 134678889999
Q ss_pred CCC-C-eeec-ccchhhHHHHHHHHHHHHHc----CCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCC
Q 018905 209 FQG-P-NHAA-VTACATGAHSIGDAARMIQF----GDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFD 281 (349)
Q Consensus 209 l~G-p-~~~v-~~acaS~~~Al~~A~~~I~~----G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~ 281 (349)
+.. + .+.| ..+|++++.||..|..+|++ |.++.|||+|+|.+ +...-......... .+
T Consensus 158 l~~~~~~~dv~~~~Csgg~~AL~~A~~~i~a~~~~G~~~~vLVvg~E~~-S~~~~~~~~~~~~~--------------~~ 222 (465)
T 3e1h_A 158 LSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVS-TTMVRSELESIDAL--------------QE 222 (465)
T ss_dssp CCTTCEEEEECSCGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEECC-GGGHHHHHHHHHHH--------------TC
T ss_pred CCCCeeEEEecCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEEEeec-chhcCccccccccc--------------cc
Confidence 977 4 5888 79999999999999999997 99999999999984 33321111111000 01
Q ss_pred CCCCcceecceeeeEEeCChH
Q 018905 282 CGRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 282 ~~~~G~~~gEGAaalvL~~~~ 302 (349)
.....+++||||+|+||++.+
T Consensus 223 d~~t~~LFGDGAaAvVl~~~~ 243 (465)
T 3e1h_A 223 TRIGIALFSDCASAVILSNGI 243 (465)
T ss_dssp CCCHHHHBCCEEEEEEEECCT
T ss_pred ccccccccccceeEEEEEccC
Confidence 122357799999999998753
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-12 Score=119.37 Aligned_cols=120 Identities=17% Similarity=0.087 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+++|+++++++ .|++++..+.. . .+ ..+.+++..+|
T Consensus 74 ~~~La~~Aa~~aL~~agl~~~dId-----~vi~~t~~~~~---------------------~----~p-~~a~~v~~~lG 122 (359)
T 3h78_A 74 VSALMVPAARQAIEAAGLLPEDID-----LLLVNTLSPDH---------------------H----DP-SQACLIQPLLG 122 (359)
T ss_dssp THHHHHHHHHHHHHHTTCCGGGCC-----EEEEECSSCSS---------------------S----BS-CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCHHHCC-----EEEEEeCCCCC---------------------C----CC-cHHHHHHHHcC
Confidence 467999999999999999999888 89999864321 0 11 24678888999
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCC-CCCc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC-GRDG 286 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~-~~~G 286 (349)
+.. |.+.|+.+|+|++.||..|..+|++|.++.+||+|+|.+.... . + -|. ....
T Consensus 123 l~~~~~~~v~~aC~s~~~Al~~A~~~i~sG~~~~vLvvg~e~~S~~~-----------~------~------~d~~~~t~ 179 (359)
T 3h78_A 123 LRHIPVLDIRAQASGLLYGLQMARGQILAGLARHVLVVCGEVLSKRM-----------D------C------SDRGRNLS 179 (359)
T ss_dssp CCSCCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEECGGGC-----------C------C------STTTHHHH
T ss_pred CCCCcEEEECCHhHHHHHHHHHHHHHHHCCCcCEEEEEEEchhcccC-----------C------c------cccccccc
Confidence 965 8999999999999999999999999999999999999732211 0 0 010 1134
Q ss_pred ceecceeeeEEeCChH
Q 018905 287 FVIGEGSGVLVLEELE 302 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~ 302 (349)
+++||||+|+||++.+
T Consensus 180 ~lfGDGAaA~vl~~~~ 195 (359)
T 3h78_A 180 ILLGDGAGAVVVSAGE 195 (359)
T ss_dssp TTBCEEEEEEEEECCS
T ss_pred ceecceeEEEEEEecC
Confidence 6789999999999753
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.4e-12 Score=120.56 Aligned_cols=115 Identities=12% Similarity=0.097 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|++.|+.+||+++|+++++|+ .|++|+..+... ....+..|+..||
T Consensus 52 ~~~La~~Aa~~aL~~agi~~~~Id-----~li~~t~t~~~~--------------------------~p~~a~~v~~~lg 100 (450)
T 2f82_A 52 VISMSFNAVTSLLEKYKIDPKQIG-----RLEVGSETVIDK--------------------------SKSIKTFLMQLFE 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE-----EEEEECCCCSCS--------------------------SSCHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHcCcCHHHCC-----EEEEEecCCCCC--------------------------CCcHHHHHHHHhC
Confidence 578999999999999999877775 677787643210 1134667888888
Q ss_pred C----CCCeeecccchhhHHHHHHHHHHHHHcCCC--CEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCC
Q 018905 209 F----QGPNHAAVTACATGAHSIGDAARMIQFGDS--DVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (349)
Q Consensus 209 l----~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~ 282 (349)
+ ..+.+.|.++|+|++.||..|..+|++|.+ +.+||+|+|.+. .. .
T Consensus 101 l~g~~~~~~~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~-------------~~---------------~ 152 (450)
T 2f82_A 101 KCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAV-------------YA---------------E 152 (450)
T ss_dssp TTTCCCCBCCEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEEC-------------CS---------------S
T ss_pred CcCCCCceEEEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeecc-------------cc---------------C
Confidence 7 348899999999999999999999999998 999999999731 11 1
Q ss_pred CCCcceecceeeeEEeCChH
Q 018905 283 GRDGFVIGEGSGVLVLEELE 302 (349)
Q Consensus 283 ~~~G~~~gEGAaalvL~~~~ 302 (349)
...+.+.||||+|+||++.+
T Consensus 153 ~~~~~~fGDGA~A~ll~~~~ 172 (450)
T 2f82_A 153 GPARPTGGAAAIAMLIGPDA 172 (450)
T ss_dssp STTGGGCEEEEEEEEEESSC
T ss_pred CCCCcccccceEEEEeccCC
Confidence 12567899999999998753
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=120.65 Aligned_cols=119 Identities=9% Similarity=0.077 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+++||+++|+++++++ .+++++..++.. . ...+.+++..+|
T Consensus 66 ~~~La~~Aa~~aL~~agi~~~~Id-----~vi~~t~~~~~~-------------------------~-p~~a~~v~~~lG 114 (354)
T 4efi_A 66 AGDLCRKAGEKLLAGLGWQADSID-----ALIFVSQTPNYR-------------------------L-PATAFVLQAELD 114 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSSCSCS-------------------------S-SCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCCC-------------------------C-CcHHHHHHHHcC
Confidence 578999999999999999999888 899998654320 0 134678899999
Q ss_pred C--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 209 F--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 209 l--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
+ +.|.+.|+.+|+|++.||..|..+|++|.++.+||+|+|.+..... +......
T Consensus 115 l~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~------------------------~~d~~~~ 170 (354)
T 4efi_A 115 LPASCLALDINLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTISKMID------------------------PTDRSTS 170 (354)
T ss_dssp CCTTSEEEEECCCTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGCC------------------------TTCHHHH
T ss_pred cCCCccEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhcccCC------------------------ccccccc
Confidence 9 3589999999999999999999999999999999999998321110 0001125
Q ss_pred ceecceeeeEEeCChH
Q 018905 287 FVIGEGSGVLVLEELE 302 (349)
Q Consensus 287 ~~~gEGAaalvL~~~~ 302 (349)
+++||||+|+||++.+
T Consensus 171 ~lfGDGA~A~vl~~~~ 186 (354)
T 4efi_A 171 LLFGDAGTMTALETSN 186 (354)
T ss_dssp TTBCCEEEEEEEEECC
T ss_pred cccccceeEEEEeecC
Confidence 6799999999998743
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-11 Score=108.79 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||++||+++++|+ .+++|+.... . ..+..++..++
T Consensus 55 ~sdLa~~Aa~~AL~~AGi~~~DID-----~II~gt~t~q----------------------~-------~~A~~va~~Lg 100 (347)
T 3lma_A 55 ERKLMEDAVQSALSKQNLKKEDID-----IFLAGDLLNQ----------------------N-------VTANYVARHLK 100 (347)
T ss_dssp HHHHHHHHHHHHHHTTTCCGGGCS-----EEEEEESSSS----------------------S-------TTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCc----------------------h-------hHHHHHHHHhC
Confidence 467999999999999999999998 8999885321 0 12334555554
Q ss_pred CCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 209 l~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
+ |.+.|+++|+|++.||..|..+|++|.++.+||+|+|.+.
T Consensus 101 i--pafdV~~ACsg~~~AL~~Aa~~I~sG~~~~VLVVGaE~~S 141 (347)
T 3lma_A 101 I--PFLCLFGACSTSMESIAISSALIDGGFAKRALAATSSHNA 141 (347)
T ss_dssp C--CEEEBCCSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGG
T ss_pred C--CEEEecChhHHHHHHHHHHHHHHhcCCCCEEEEEEecccc
Confidence 4 8999999999999999999999999999999999999843
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=114.90 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHH
Q 018905 127 ARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMK 206 (349)
Q Consensus 127 ~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 206 (349)
.....|+.+|+.+||+++|+++++|+ .|+++++.+. . .+ ..+.+|+..
T Consensus 135 ~~~~~La~~Aa~~AL~~agi~~~dId-----~li~~t~t~~----------------------~----~P-~~a~~v~~~ 182 (413)
T 3v7i_A 135 EAVQAYGERAARGALQIAGLDVADVD-----CLITSNSTTP----------------------A----LP-GLDVALANR 182 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECCSSC----------------------C----SS-CHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCcCHHHCC-----EEEEEccCCC----------------------C----cC-HHHHHHHHH
Confidence 35678999999999999999999888 8999986531 0 11 246788999
Q ss_pred cCCCC--Ceeec-ccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCC
Q 018905 207 YGFQG--PNHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCG 283 (349)
Q Consensus 207 lgl~G--p~~~v-~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~ 283 (349)
+|+.. +.+.| ..+|++++.||..|..+|++|.++.|||+|+|.+...+ .+ +..
T Consensus 183 LGl~~~~~~~~v~~~~Cagg~~AL~~A~~~i~ag~~~~vLvvg~E~~S~~~-----------------------~~-~d~ 238 (413)
T 3v7i_A 183 LPLRGDTMLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTTY-----------------------QP-ADD 238 (413)
T ss_dssp TTCCTTCEEEEESSCGGGHHHHHHHHHHHHHHHCTTCEEEEEEEECGGGGC-----------------------CS-SCC
T ss_pred hCCCCCceEEEeeCCccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccccc-----------------------Cc-ccc
Confidence 99976 45777 99999999999999999999999999999999832111 01 111
Q ss_pred CC-----cceecceeeeEEeCChH
Q 018905 284 RD-----GFVIGEGSGVLVLEELE 302 (349)
Q Consensus 284 ~~-----G~~~gEGAaalvL~~~~ 302 (349)
.. ..++||||+|+||++.+
T Consensus 239 ~~~~lv~~~LFGDGAaAvvl~~~~ 262 (413)
T 3v7i_A 239 TLESLIVRLLFADTAVAAVVTGRP 262 (413)
T ss_dssp STTHHHHHHHBCCEEEEEEEESSC
T ss_pred chhhhhcceeeccccEEEEEEecC
Confidence 11 56799999999998753
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-11 Score=111.13 Aligned_cols=119 Identities=22% Similarity=0.286 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+++|+++||+++|+++++|+ .|+++++.+... . ...+..|...||
T Consensus 62 ~~~la~~Aa~~aL~~ag~~~~dId-----~li~~t~t~~~~---------------------~-----P~~a~~v~~~LG 110 (350)
T 4ewp_A 62 VPVMAVGAAREALERAGLQGSDLD-----AVIVSTVTFPHA---------------------T-----PSAAALVAHEIG 110 (350)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCS-----EEEEECSCCSCS---------------------S-----SCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeccCCCC---------------------C-----CchHHHHHHHhC
Confidence 567999999999999999999988 888888654321 1 134567888999
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
++. +++.|..+|++++.||..|..+|++|..+.+||+++|.+ +.. + .| ......+
T Consensus 111 l~~~~a~di~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~E~~-s~~----------~------------d~-~~~~~~~ 166 (350)
T 4ewp_A 111 ATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERL-SDV----------V------------DP-TDRSISF 166 (350)
T ss_dssp CTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG-GGG----------C------------CT-TCTTTGG
T ss_pred CCCceEEEeecchhhHHHHHHHhhhhhhCCCccceeEeeeeec-eec----------c------------cc-ccccccc
Confidence 976 888999999999999999999999999999999999972 211 0 11 1123467
Q ss_pred eecceeeeEEeCChH
Q 018905 288 VIGEGSGVLVLEELE 302 (349)
Q Consensus 288 ~~gEGAaalvL~~~~ 302 (349)
++||||+|+||+..+
T Consensus 167 lfgDGA~A~vl~~~~ 181 (350)
T 4ewp_A 167 LLGDGAGAVIVAASD 181 (350)
T ss_dssp GBCEEEEEEEEEEES
T ss_pred ccccchheeeeeccc
Confidence 899999999998643
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.2e-11 Score=112.69 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+++|+.+||+++| +++|+ .|++++..+... . ...+..|+..||
T Consensus 56 ~~~La~~Aa~~aL~~a~--~~~Id-----~li~~t~t~~~~-------------------------~-ps~a~~v~~~LG 102 (388)
T 3v4n_A 56 IVTFAANAAEAILTKED--KEAID-----MVIVGTESSIDE-------------------------S-KAAAVVLHRLMG 102 (388)
T ss_dssp HHHHHHHHHHTTCCHHH--HHHEE-----EEEEECSSCSBS-------------------------S-SCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCC--cccCC-----EEEEEeccCCCc-------------------------C-ccHHHHHHHHcC
Confidence 57899999999999987 66666 788888654320 1 134678899999
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
+.+ +.+.+..+|+++..||..|..+|++|.++.+||+|+|.+... ++ ..+.
T Consensus 103 l~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~vLVvg~e~~s~~--------------------------~~-~~~~ 155 (388)
T 3v4n_A 103 IQPFARSFEIKEAXYGATAGLQLAKNHVALHPDKKVLVVAADIAKYG--------------------------LN-SGGE 155 (388)
T ss_dssp CCSSCEEEEEESGGGHHHHHHHHHHHHHHHCTTCEEEEEEEEEECCC--------------------------TT-CTTG
T ss_pred CCCCceEeehhhhhhHHHHHHHHHHHHHhcCCCCEEEEEEehhhccc--------------------------CC-CCCC
Confidence 975 888999999999999999999999999999999999973211 01 0124
Q ss_pred ceecceeeeEEeCCh
Q 018905 287 FVIGEGSGVLVLEEL 301 (349)
Q Consensus 287 ~~~gEGAaalvL~~~ 301 (349)
.+.||||+|+||++.
T Consensus 156 ~lfGDGA~A~ll~~~ 170 (388)
T 3v4n_A 156 PTQGAGAVAMLVSSE 170 (388)
T ss_dssp GGCEEEEEEEEEEES
T ss_pred CccccceeEEEeecC
Confidence 778999999999873
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=111.95 Aligned_cols=114 Identities=10% Similarity=0.098 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+++|+.+||+++|+++++|+ .+++++..+... ....+..|...|+
T Consensus 73 ~~~La~~Aa~~aL~~agi~~~dId-----~li~~T~t~~~~--------------------------~ps~a~~v~~~L~ 121 (478)
T 2p8u_A 73 INSLCMTVVQNLMERNNLSYDCIG-----RLEVGTETIIDK--------------------------SKSVKTNLMQLFE 121 (478)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE-----EEEEECSCCSCS--------------------------SSCHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEccCCccc--------------------------CccHHHHHHHHHh
Confidence 578999999999999999888776 788888653310 0123455664444
Q ss_pred ---CCC-CeeecccchhhHHHHHHHHHHHHHcCC--CCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCC
Q 018905 209 ---FQG-PNHAAVTACATGAHSIGDAARMIQFGD--SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (349)
Q Consensus 209 ---l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~--~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~ 282 (349)
+.+ +.+.|.++|+++..||..|..+|++|. .+.+||+|+|.. . |..
T Consensus 122 ~lG~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia-------------~---------------~~~ 173 (478)
T 2p8u_A 122 ESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIA-------------V---------------YAT 173 (478)
T ss_dssp TTTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEE-------------C---------------CCS
T ss_pred hcCCCCceEEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeee-------------c---------------ccC
Confidence 443 788899999999999999999999999 999999999941 0 111
Q ss_pred CCCcceecceeeeEEeCCh
Q 018905 283 GRDGFVIGEGSGVLVLEEL 301 (349)
Q Consensus 283 ~~~G~~~gEGAaalvL~~~ 301 (349)
.....+.||||+|+||++.
T Consensus 174 ~~~~~~fGdGA~A~Ll~~~ 192 (478)
T 2p8u_A 174 GNARPTGGVGAVALLIGPN 192 (478)
T ss_dssp STTGGGCEEEEEEEEEESS
T ss_pred CCCCCcccceeEEEEEecC
Confidence 1134679999999999864
|
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=5e-09 Score=101.41 Aligned_cols=114 Identities=12% Similarity=0.109 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|++.|+.+||+++|+++++|+ .|+++|..+... . -..+..|...||
T Consensus 54 ~~~ma~~Aa~~al~~a~i~~~~Id-----~ii~aT~t~~~~---------------------~-----ps~a~~v~~~l~ 102 (460)
T 2wya_A 54 INSLCLTVVQRLMERIQLPWDSVG-----RLEVGTETIIDK---------------------S-----KAVKTVLMELFQ 102 (460)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEE-----EEEEECSCCSCS---------------------S-----SCHHHHHGGGTG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEeCCCCCC---------------------C-----CchHHHHHHHHh
Confidence 467999999999999999988876 788998654321 0 124556777787
Q ss_pred CCC----CeeecccchhhHHHHHHHHHHHHHcCCCCE--EEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCC
Q 018905 209 FQG----PNHAAVTACATGAHSIGDAARMIQFGDSDV--MVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC 282 (349)
Q Consensus 209 l~G----p~~~v~~acaS~~~Al~~A~~~I~~G~~d~--~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~ 282 (349)
+.| +++-+..+|+++..||..|..+|++|..+. +|+++.+. +. |..
T Consensus 103 ~~g~~~~~a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~----------------~~------------~~d 154 (460)
T 2wya_A 103 DSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDI----------------AV------------YPS 154 (460)
T ss_dssp GGTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEE----------------EC------------CCS
T ss_pred ccCCCCeeEechhhhhhhHHHHHHHHHHHHHhccccceEEEEEeccc----------------cc------------ccc
Confidence 654 457789999999999999999999998763 44444332 10 111
Q ss_pred CCCcceecceeeeEEeCCh
Q 018905 283 GRDGFVIGEGSGVLVLEEL 301 (349)
Q Consensus 283 ~~~G~~~gEGAaalvL~~~ 301 (349)
.......|+||+|++++..
T Consensus 155 ~~~~~~~GdGA~A~l~~~~ 173 (460)
T 2wya_A 155 GNARPTGGAGAVAMLIGPK 173 (460)
T ss_dssp STTGGGCEEEEEEEEEESS
T ss_pred ccccccCcchHHhhhcccC
Confidence 2234567999999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 349 | ||||
| d2ix4a1 | 270 | c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II | 2e-67 | |
| d1j3na1 | 249 | c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II { | 5e-65 | |
| d2gfva1 | 250 | c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II { | 9e-60 | |
| d1ox0a1 | 256 | c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II | 4e-51 | |
| d2vbaa1 | 253 | c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {E | 1e-50 | |
| d1e5ma1 | 250 | c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II { | 1e-48 | |
| d1tqya1 | 216 | c.95.1.1 (A:3-218) Actinorhodin polyketide putativ | 4e-31 | |
| d1tqyb1 | 208 | c.95.1.1 (B:2-209) Actinorhodin polyketide putativ | 3e-27 | |
| d1tqya2 | 205 | c.95.1.1 (A:219-423) Actinorhodin polyketide putat | 2e-17 | |
| d1tqyb2 | 194 | c.95.1.1 (B:210-403) Actinorhodin polyketide putat | 1e-14 | |
| d1e5ma2 | 161 | c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II | 2e-10 | |
| d2ix4a2 | 161 | c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II | 8e-10 | |
| d1ox0a2 | 158 | c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II | 2e-09 | |
| d2gfva2 | 161 | c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II | 3e-09 | |
| d1j3na2 | 159 | c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II | 3e-09 | |
| d2vbaa2 | 151 | c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I | 4e-07 |
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 211 bits (536), Expect = 2e-67
Identities = 211/273 (77%), Positives = 242/273 (88%), Gaps = 3/273 (1%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GMVTPLG G ETTWRRLI GECGIR +T +DLKM +FD ET+L+ F QL+SK
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
VAA VP G + GEF+E W + +++A FI YA+CAADEAL DA+WLP+++ +KERTG
Sbjct: 61 VAAFVPYGSNPGEFDEALW---LNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTG 117
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
VSIGGGIGSI D V+AAQ+ICEKRLRRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVT
Sbjct: 118 VSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVT 177
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N +PQEASR
Sbjct: 178 ACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASR 237
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKI 311
PFDC RDGFVIGEGSGV+VLEE EHAK+RGAKI
Sbjct: 238 PFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 204 bits (520), Expect = 5e-65
Identities = 121/272 (44%), Positives = 169/272 (62%), Gaps = 23/272 (8%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
+RRVVVTG+G +TP+G G E + + G+ G+R IT D L
Sbjct: 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDA--------------SALPV 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
++AA V + ++L+ K+ R + RF+ YAL AA AL DA P D ER
Sbjct: 47 RIAAEVDV-------DPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERV 98
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
G +G GIG + +++ E+ R+SPFFIP ++ NMAS H++M+YGF GP+ V
Sbjct: 99 GTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVV 158
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TACATGA ++G A RMIQ G++D+++AGGTE++I +++ F RAL+T+ N P++AS
Sbjct: 159 TACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKAS 217
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309
RPF RDGFV+GEG+GVLVLE EHAKKRGA
Sbjct: 218 RPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGA 249
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 190 bits (484), Expect = 9e-60
Identities = 109/271 (40%), Positives = 158/271 (58%), Gaps = 22/271 (8%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVVVTG+GM++P+G E+TW+ L+ G+ GI I D
Sbjct: 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS------------------- 42
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
A +FN + ++ K+ R + FI Y + A +A+ D L + R G
Sbjct: 43 -AYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQD-SGLEITEENATRIG 100
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
+IG GIG + + + R++SPFF+P ++NM +GH+++ YG +GP+ + T
Sbjct: 101 AAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIAT 160
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
A +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASR
Sbjct: 161 AQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASR 219
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309
P+D RDGFV+G+G+G+LVLEE EHAKKRGA
Sbjct: 220 PWDKERDGFVLGDGAGMLVLEEYEHAKKRGA 250
|
| >d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 168 bits (426), Expect = 4e-51
Identities = 111/272 (40%), Positives = 149/272 (54%), Gaps = 23/272 (8%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
L RVVVTG G+ +P+G E W L G+ GI IT D +FD
Sbjct: 8 LNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFD--HSDFD------------- 52
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
V +F D + KD + YAL AA EA++ A L + ++R
Sbjct: 53 -----VHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHA-NLDVEALNRDRF 106
Query: 158 GVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAV 217
GV + GIG I + D + EK +R+ P +P+ L NMASG+V+M++G G +
Sbjct: 107 GVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSIN 166
Query: 218 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277
TAC++ +IGDA R I+FG DVM+ GGTE+SI ++AGF AL+T P AS
Sbjct: 167 TACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST--TEDPTRAS 224
Query: 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309
PFD R+GFV+GEGSG+LVLE LEHA+KRGA
Sbjct: 225 IPFDKDRNGFVMGEGSGMLVLESLEHAEKRGA 256
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 167 bits (423), Expect = 1e-50
Identities = 84/275 (30%), Positives = 129/275 (46%), Gaps = 23/275 (8%)
Query: 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTS 97
++R V+TG+G+V+ +G + L G GI + S
Sbjct: 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDS--------------GMRS 46
Query: 98 KVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERT 157
V V + ++ K R ++ YA + ++A+ DA P R
Sbjct: 47 HVWGNVKL-------DTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRV 99
Query: 158 GVSIGGGIGSISDTVDAAQMIC-EKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAA 216
G+ G G GS V A + + L+ + P+ + + + + S ++ + G N++
Sbjct: 100 GLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSI 159
Query: 217 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276
+ACAT AH IG+A IQ G D++ AGG E + F AL+TKYN TP++A
Sbjct: 160 SSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LCWEMACEFDAMGALSTKYNDTPEKA 218
Query: 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKI 311
SR +D RDGFVI G G++V+EELEHA RGA I
Sbjct: 219 SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHI 253
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 162 bits (409), Expect = 1e-48
Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 22/271 (8%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
+RVVVTG+G +TP+G + W+ L+ G GI IT D +
Sbjct: 2 KRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDA--------------SDQACR 47
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
V F+ +L+ K+ + + RF +A+CA+ +A++DAK + ++ + G
Sbjct: 48 FGGEVKD------FDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINEL-NADEIG 100
Query: 159 VSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVT 218
V IG GIG + D ++ +K R SPF IP ++ NMASG ++ G +GPN+ VT
Sbjct: 101 VLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVT 160
Query: 219 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278
ACA G+++IGDA R++Q G + M+ GGTE++I LS AGF +RAL+ N P ASR
Sbjct: 161 ACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSF-RNDDPLHASR 219
Query: 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309
PFD RDGFV+GEGSG+L+LEELE A RGA
Sbjct: 220 PFDKDRDGFVMGEGSGILILEELESALARGA 250
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 115 bits (287), Expect = 4e-31
Identities = 55/236 (23%), Positives = 88/236 (37%), Gaps = 27/236 (11%)
Query: 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSK 98
RRVV+TG+G+ P G G W L G R I+ D +
Sbjct: 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEAD-------- 52
Query: 99 VAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTG 158
++ + R +A+ A EA + P D R G
Sbjct: 53 ------------FDPVAEGFGPRELDRMDRASQFAVACAREAFAASGLDP-DTLDPARVG 99
Query: 159 VSIGGGIGSISDTVDAAQMIC------EKRLRRLSPFFIPRILINMASGHVSMKYGFQGP 212
VS+G + + + ++ E LS ++ ++ V+ G +GP
Sbjct: 100 VSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGP 159
Query: 213 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK 268
T C +G S+G+A R I+ G +DVM AG ++ I + +A F RA T +
Sbjct: 160 VTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR 215
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 104 bits (259), Expect = 3e-27
Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 22/227 (9%)
Query: 41 VVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVA 100
V++TG+G+V P G G W ++ G G+ +T D+ Q+ F
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHA------ 55
Query: 101 AVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVS 160
P I + + + A + GV
Sbjct: 56 ---PDHIPGRLLPQTDPSTRLALTAADWALQDA------------KADPESLTDYDMGVV 100
Query: 161 IGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTAC 220
G T + + + + +S + + +G +S+++G +GP+ A V
Sbjct: 101 TANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQ 160
Query: 221 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT 267
A G ++G A R I+ G + ++V+GG +S++D S ++T
Sbjct: 161 AGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST 206
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 77.6 bits (190), Expect = 2e-17
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 272 TPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPH 331
P+ ASRPFD RDGFV+ EG+ + VLE+ + A RGA+I+AE+ GY +A+H+T
Sbjct: 2 DPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLK 61
Query: 332 IDGKGAILAMTRALKQAY 349
DG+ + AL ++
Sbjct: 62 ADGREMAETIRVALDESR 79
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 69.2 bits (168), Expect = 1e-14
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAK-IYAEVRGYGMSGDAHHITQPH 331
P A PFD G+V GEG +LVLE+ A+ RG Y E+ G + D +
Sbjct: 2 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRP 61
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 56.7 bits (136), Expect = 2e-10
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
KIY E+ GY M+ DA+HIT P DG+GA A+ ALK +
Sbjct: 1 KIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDS 39
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 54.7 bits (131), Expect = 8e-10
Identities = 30/36 (83%), Positives = 33/36 (91%)
Query: 312 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 347
YAE+ GYGMSGDAHHITQP DGKGA+LAMTRAL+Q
Sbjct: 1 YAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQ 36
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 54.0 bits (129), Expect = 2e-09
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 311 IYAEVRGYGMSGDAHHITQPHIDGKGAILAMTR 343
I AEV GYG + DA+H+T PH +G+GAI A+
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKL 34
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 53.2 bits (127), Expect = 3e-09
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQAY 349
KIYAE+ G+GMS DA+H+T P +G GA LAM AL+ A
Sbjct: 1 KIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAG 40
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 53.3 bits (127), Expect = 3e-09
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 310 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348
+IYAE+ G+G S DAHHIT+PH +GKGA LAM RALK A
Sbjct: 1 RIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDA 39
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 47.1 bits (111), Expect = 4e-07
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 312 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRA 344
YAE+ GYG + D + P G+GA+ M A
Sbjct: 1 YAEIVGYGATSDGADMVAPS--GEGAVRCMKMA 31
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqya2 | 205 | Actinorhodin polyketide putative beta-ketoacyl syn | 99.54 | |
| d1tqyb2 | 194 | Actinorhodin polyketide putative beta-ketoacyl syn | 99.41 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 99.37 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 99.35 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 99.34 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 99.32 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 99.26 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 99.24 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 99.23 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 99.17 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 99.16 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 99.1 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 98.98 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 98.84 |
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-49 Score=352.98 Aligned_cols=249 Identities=44% Similarity=0.799 Sum_probs=229.9
Q ss_pred CceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCC
Q 018905 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (349)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i 118 (349)
+||||||||+++|.|.+.++||++|++|+++|++++.++ ...++.++++.++. |+...++
T Consensus 2 rrVaItG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~~~--------------~~~~~~~~~~~v~~------~~~~~~~ 61 (250)
T d2gfva1 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFD--------------TSAYATKFAGLVKD------FNCEDII 61 (250)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------CTTCSCCEEECCTT------CCCTTTS
T ss_pred CeEEEECCeeECCCcCCHHHHHHHHHcCCCeeecCCccc--------------ccccCCccceeccc------chhhhhh
Confidence 689999999999999999999999999999999987654 44667788888887 7766678
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhH
Q 018905 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
++++.++++|+++|++.++.+||+|||+...+.. ..++||++|++.+.....+..+..+...+...+++..+++.+.|.
T Consensus 62 ~~~~~~~~d~~~~~~l~aa~~Al~dAg~~~~~~~-~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (250)
T d2gfva1 62 SRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEEN-ATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNM 140 (250)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHHHHTCCCCTTT-GGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTH
T ss_pred hhHHHhhcCHHHHHHHHHHHHHHHhcCCCccccC-ccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhH
Confidence 8899999999999999999999999999887764 889999999999999988888888888889999999999999999
Q ss_pred HHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
++++|+..||++||+++|+++|+|++.||.+|+++|++|++|++||||+|...+++.+..|..++.++.. ++.|++.||
T Consensus 141 ~a~~ia~~~gl~Gp~~tv~~aCaSg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~-~~~p~~~~r 219 (250)
T d2gfva1 141 VAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASR 219 (250)
T ss_dssp HHHHHHHHTTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCHHHHCC
T ss_pred HHHHHHHHhCCCCCccccccccchhhhhhHHHHHHHHcCCcchhhcccchhhcCcHHHHHHHhcccccCC-CCCCCCccC
Confidence 9999999999999999999999999999999999999999999999999988999999999999999853 334567799
Q ss_pred CCCCCCCcceecceeeeEEeCChHHHHhcCC
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~ 309 (349)
|||.+++|+++|||+++||||++++|++||+
T Consensus 220 PFD~~rdG~v~gEGaa~lVLE~~~~A~~rGA 250 (250)
T d2gfva1 220 PWDKERDGFVLGDGAGMLVLEEYEHAKKRGA 250 (250)
T ss_dssp TTBTTCCSBCBBCEEEEEEEEEHHHHHHHTC
T ss_pred CCCCCCCCEeeeeEEEEEEECcHHHHHHCcC
Confidence 9999999999999999999999999999984
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3e-49 Score=353.20 Aligned_cols=249 Identities=49% Similarity=0.838 Sum_probs=225.6
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|+||+|||||+++|.|.+.++||++|++|++++.++++++ ...++..+.+.++ +++..+
T Consensus 1 M~rVaItG~G~vsp~g~~~~e~w~~l~~G~s~i~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~~ 59 (249)
T d1j3na1 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFD--------------ASALPVRIAAEVD-------VDPGAY 59 (249)
T ss_dssp CCCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSC--------------CTTSSCCEEECCC-------CCGGGT
T ss_pred CCcEEEECCEeECCCcCCHHHHHHHHHcCCCccccCCccc--------------cccCCcccccccc-------cccccc
Confidence 6799999999999999999999999999999999988654 2344555555544 455556
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
++++..+.+++++++++.++.+||+|||++++++. ..++||++|++.++............+.+...++++.++..+.|
T Consensus 60 ~~~~~~~~~d~~~~~~l~aa~~Al~dAGl~~~~~~-~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (249)
T d1j3na1 60 LDRKELRRLDRFVQYALIAAQLALEDAGLKPEDLD-PERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIAN 138 (249)
T ss_dssp SCHHHHTTSCHHHHHHHHHHHHHHHHHTCCGGGSC-GGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTT
T ss_pred ccHHHHhhCCHHHHHHHHHHHHHHHHcCCChhHcC-CccEEEEEEECCCcccccccccccccccCccccChhhhccccch
Confidence 88899999999999999999999999999988775 88999999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.++++|+..||++||+++|+++|+|++.||.+|+++|++|++|++||||+|....+..+..|..++.++.. +..|++.|
T Consensus 139 ~~~~~is~~~gl~Gp~~tv~~aCaSsl~Ai~~A~~~i~~G~~d~alvgg~d~~~~p~~~~~f~~~~~ls~~-~~~p~~~~ 217 (249)
T d1j3na1 139 MASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKAS 217 (249)
T ss_dssp HHHHHHHHHHTCCSCBCCBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCHHHHC
T ss_pred hhhhhhHhhcCCCCCccccccccchHHHHHHHHHHHHHcCCCCeeeecchHhhhCcHHHHHHHhCCcccCC-CCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999998899999999999999853 33456779
Q ss_pred CCCCCCCCcceecceeeeEEeCChHHHHhcCC
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~ 309 (349)
+|||.+++|+++||||+++|||++++|++||+
T Consensus 218 rPFd~~~dG~v~gEGa~~lvLe~~~~A~~rGA 249 (249)
T d1j3na1 218 RPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGA 249 (249)
T ss_dssp CTTBTTCCCBCBBCEEEEEEEEEHHHHHHTTC
T ss_pred CCccCCCCCEeeEeEEEEEEEccHHHHHHCcC
Confidence 99999999999999999999999999999984
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=6e-47 Score=338.27 Aligned_cols=250 Identities=44% Similarity=0.760 Sum_probs=229.3
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
++||||||||+++|.|.+.++||++|++|+++++++++++ ...++.++.+.++. ++..+.
T Consensus 1 ~~rVaItG~G~v~p~G~~~~~~w~~L~~G~~~i~~~~~~~--------------~~~~~~~~~g~~~~------~~~~~~ 60 (250)
T d1e5ma1 1 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFD--------------ASDQACRFGGEVKD------FDATQF 60 (250)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSC--------------CTTSSCCEEECCCS------CCGGGT
T ss_pred CCeEEEECCeeECCCCCCHHHHHHHHHcCCCeeccCCccc--------------cccccccccceeee------cccccc
Confidence 4789999999999999999999999999999999988755 44566677888875 555555
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILIN 197 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (349)
++++..+.+++++++++.++.+||++||+..+.+. ..++++++|++.+....+...+..+.+.++....+..+...+.+
T Consensus 61 ~~~~~~~~~d~~~~~~~~a~~~Al~~Agl~~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (250)
T d1e5ma1 61 LDRKEAKRMDRFCHFAVCASQQAINDAKLVINELN-ADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIAN 139 (250)
T ss_dssp SCHHHHHTSCHHHHHHHHHHHHHHHHHTCCCCTTT-GGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTT
T ss_pred cchhhhhhcCcHHHHHHHHHHHHHHHcCCChHhhc-CCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcc
Confidence 88899999999999999999999999999987775 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCC
Q 018905 198 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 277 (349)
Q Consensus 198 ~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (349)
.++++++..||++||+++|+++|+|++.||++|+++|++|++|++||||+|...++..+..|..++.++.. ...|++.|
T Consensus 140 ~~a~~is~~~gl~Gp~~tv~~ACsS~l~Ai~~A~~~i~~G~~d~~lvGg~~~~~~~~~~~~f~~~~~ls~~-~~~p~~~~ 218 (250)
T d1e5ma1 140 MASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHAS 218 (250)
T ss_dssp HHHHHHHHHHTCCSCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCGGGTC
T ss_pred hhhhhHHHhccCCCCCccccccchhhhhhhHHHhhcccCCcccccccccchhhcCcHHHHHHHhcCCccCC-CCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998999999999999998853 34567889
Q ss_pred CCCCCCCCcceecceeeeEEeCChHHHHhcCC
Q 018905 278 RPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA 309 (349)
Q Consensus 278 ~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~ 309 (349)
+|||.+++|+++||||++||||++++|+++|+
T Consensus 219 rPFD~~~dG~~~gEGa~~~vLe~l~~A~~rGA 250 (250)
T d1e5ma1 219 RPFDKDRDGFVMGEGSGILILEELESALARGA 250 (250)
T ss_dssp CTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTC
T ss_pred CCCCCCCCCEeeEeeEEEEEEeeHHHHHHCcC
Confidence 99999999999999999999999999999984
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-45 Score=326.64 Aligned_cols=252 Identities=33% Similarity=0.516 Sum_probs=216.7
Q ss_pred CCceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC
Q 018905 38 LRRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW 117 (349)
Q Consensus 38 ~~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~ 117 (349)
|+||||||||+++|.|.+.++||++|++|++++.++++++ ...++.+..+.+. +....+
T Consensus 1 m~RVvITG~G~i~p~G~~~~~~w~~L~~G~sgi~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~~ 59 (253)
T d2vbaa1 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELK--------------DSGMRSHVWGNVK-------LDTTGL 59 (253)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHH--------------HTTCSCCEEECCC-------CCCTTS
T ss_pred CCcEEEEccEEECCCCCCHHHHHHHHHcCCCccccCCccc--------------cccCccccccccc-------cccccc
Confidence 6799999999999999999999999999999999887754 2234445555554 344455
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHH-HhccCCCCCcchhhhhh
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMIC-EKRLRRLSPFFIPRILI 196 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 196 (349)
++....+.+++..++.+.+..+|+.++++......+..++|+++|+..++..........+. ..+...++|+.++....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~r~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (253)
T d2vbaa1 60 IDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMA 139 (253)
T ss_dssp SCHHHHTTCCHHHHHHHHHHHHHHHHHTCCHHHHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHST
T ss_pred ccchhhccchhhhhhhhHHHHHHHHHhhccchhccCCCCEEEEeccccccccccccccccccccCCccccCchhhhcccc
Confidence 77888999999999999999999999999754433578999999999988776665554442 33455678889999999
Q ss_pred hHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCC
Q 018905 197 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 276 (349)
Q Consensus 197 ~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (349)
+.++++|++.||++||+++|+++|+|++.||++|+++|+.|++|++||||+|. ..+.....|..++.++..+...|++.
T Consensus 140 ~~~a~~is~~~g~~Gp~~~i~taCaSsl~Ai~~A~~~i~~G~~d~alvgg~~~-~~~~~~~~~~~~~~ls~~~~~~P~~~ 218 (253)
T d2vbaa1 140 SGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LCWEMACEFDAMGALSTKYNDTPEKA 218 (253)
T ss_dssp THHHHHHHTTTTCCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCSCTTSGGGS
T ss_pred ccccceeccccCcccceeeeeccchhHHHHHHHHHHhcchhccceeeecchhh-hhcchhhhHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999997 56666778889999987767778899
Q ss_pred CCCCCCCCCcceecceeeeEEeCChHHHHhcCCeE
Q 018905 277 SRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKI 311 (349)
Q Consensus 277 ~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~ 311 (349)
|+|||.+++|+++|||++++|||++++|++||++|
T Consensus 219 ~rPFD~~~~G~v~gEGa~~lvLe~le~A~~rGa~I 253 (253)
T d2vbaa1 219 SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHI 253 (253)
T ss_dssp CCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCC
T ss_pred CCCCCCCCCCEeeeeEEEEEEEccHHHHHHccCcC
Confidence 99999999999999999999999999999999875
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=2.4e-44 Score=324.39 Aligned_cols=270 Identities=78% Similarity=1.260 Sum_probs=231.2
Q ss_pred CceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCC
Q 018905 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWL 118 (349)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i 118 (349)
+||||||||+++|.|.+.++||++|++|+++|.+++..+|....|+.+...+.....+.+++++++....+..|+...+
T Consensus 1 rRVvITG~G~vsP~G~~~ee~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (270)
T d2ix4a1 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALW- 79 (270)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHH-
T ss_pred CeEEEECceeECCCcCCHHHHHHHHHcCCCeeccCChhhcccccccccccccccccccceeeeecccccCchhhhHHHh-
Confidence 5899999999999999999999999999999999999999988887766655555677788888876322333332221
Q ss_pred CchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhH
Q 018905 119 NSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINM 198 (349)
Q Consensus 119 ~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
.....+++..+.+..+..+|+.+++....+.....+.++.++.........................++.+++.+.|.
T Consensus 80 --~~~~~~~~~~~~a~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (270)
T d2ix4a1 80 --LNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNM 157 (270)
T ss_dssp --SCSTTCCHHHHHHHHHHHHHHHHTTCCCCSHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTH
T ss_pred --hhhhhhhhhHHHHHHHHHHHHHHhhhccccccccccceEEeeccccccccchhhcchhhhccccccCcccCcccccch
Confidence 234567788888999999999999876543222456777777777777777777777777778889999999999999
Q ss_pred HHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCC
Q 018905 199 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 278 (349)
Q Consensus 199 ~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (349)
++++|++.||++||+++|+++|+|++.||++|+++|++|+||++||||+|....|..+..|..++.++......|++.|+
T Consensus 158 ~a~~is~~~~l~Gp~~~v~~aCaSsl~Ai~~A~~~l~~G~~d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~~p~~~~r 237 (270)
T d2ix4a1 158 ASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASR 237 (270)
T ss_dssp HHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCC
T ss_pred hHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHcCCCCeeccccchhhhhhhhHHHHHhcccccCCCCCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999766677888999
Q ss_pred CCCCCCCcceecceeeeEEeCChHHHHhcCCeE
Q 018905 279 PFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKI 311 (349)
Q Consensus 279 pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~ 311 (349)
|||.+++|+++||||+++|||++++|+++|++|
T Consensus 238 PFD~~a~G~v~gEGaa~~vLe~l~~A~~rG~~I 270 (270)
T d2ix4a1 238 PFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270 (270)
T ss_dssp TTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCC
T ss_pred CCCCCCCCEeeEeeEEEEEEeeHHHHHHccCCC
Confidence 999999999999999999999999999999975
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=1e-37 Score=270.60 Aligned_cols=205 Identities=25% Similarity=0.386 Sum_probs=190.9
Q ss_pred eEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCCCCc
Q 018905 41 VVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSWLNS 120 (349)
Q Consensus 41 v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~i~~ 120 (349)
|||||||+++|.|.|.++||++|++|+++++++++++ ...++.++++.++. |++..++++
T Consensus 2 VvITG~G~vsp~g~~~~~~w~~L~~G~sgi~~~~~~~--------------~~~~~~~~~~~~~~------~~~~~~~~~ 61 (208)
T d1tqyb1 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFD--------------VSRYPATLAGQIDD------FHAPDHIPG 61 (208)
T ss_dssp EEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTT--------------GGGSSCCEEECCCS------CCHHHHSCT
T ss_pred EEEEcceeECCCcCCHHHHHHHHHcCCCceecCcccC--------------chhccccccccccc------ccccccCCh
Confidence 9999999999999999999999999999999987655 34566778888876 777777888
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHH
Q 018905 121 KDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMAS 200 (349)
Q Consensus 121 ~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 200 (349)
++.+.++|.+++++.++.+||+|||+.++++. ..++++++|++.++.+..+..+..+...+.+...|+.+++.+.|+++
T Consensus 62 ~~~~~~~~~~~~~~~a~~~Al~~Ag~~~~~~~-~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a 140 (208)
T d1tqyb1 62 RLLPQTDPSTRLALTAADWALQDAKADPESLT-DYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNT 140 (208)
T ss_dssp TTGGGCCHHHHHHHHHHHHHHHHTTCCGGGSC-GGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHH
T ss_pred hHhhccccccccccccccccchhhhccccccc-ccccccccccccccccccchhhhhhcccccccccccccccccccccc
Confidence 99999999999999999999999999987774 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhcccccc
Q 018905 201 GHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT 267 (349)
Q Consensus 201 ~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~ 267 (349)
++|+..||++||+++|+++|+|++.||.+|+++|+.| +|++||||+|..++|+.+..|.+++.+++
T Consensus 141 ~~ia~~~gl~Gp~~tv~tACaS~l~Ai~~A~~~I~~G-~d~~lvGG~d~~l~p~~~~~f~~~~~lSt 206 (208)
T d1tqyb1 141 GQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST 206 (208)
T ss_dssp HHHHHHHTCCSSCEEEECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC
T ss_pred chhhhcccccceeeeccccccHHHHHHHHHHHHHHcC-CCEEEECccccccCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999 99999999999899999999999999984
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=9e-36 Score=259.70 Aligned_cols=207 Identities=28% Similarity=0.442 Sum_probs=182.0
Q ss_pred CceEEEeeceeCCCCCCHHHHHHHHHcCCCceeeCCccccccCCCcchhhccccCCCcceEEEEecCCCCCCCCCCCCC-
Q 018905 39 RRVVVTGIGMVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDSW- 117 (349)
Q Consensus 39 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fd~~~~- 117 (349)
+||+|||||+++|.|.+.++||++|++|+++|++++.++ .......+...++ ||...+
T Consensus 1 rRVvItG~G~v~p~G~~~~~~w~~L~~G~s~i~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~~~ 59 (216)
T d1tqya1 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFD--------------PSPYRSQVAAEAD-------FDPVAEG 59 (216)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSC--------------CTTSSCCEEECCC-------CCHHHHT
T ss_pred CeEEEEeceeECCCCCCHHHHHHHHHcCCCEeecCCccC--------------CCccccccccccc-------ccccccc
Confidence 589999999999999999999999999999999988754 2233334444433 555444
Q ss_pred CCchhhhccCHHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhcc------CCCCCcch
Q 018905 118 LNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRL------RRLSPFFI 191 (349)
Q Consensus 118 i~~~~~~~~~~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~ 191 (349)
+++++.+.+++.++|++.++.+||+|||+.+.+.. ..+++++++++.++.......+..+...+. ....+..+
T Consensus 60 ~~~~~~~~~~~~~~~~l~aa~~Al~dAg~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
T d1tqya1 60 FGPRELDRMDRASQFAVACAREAFAASGLDPDTLD-PARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMF 138 (216)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHTCCTTTCC-GGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTH
T ss_pred cChhhhcccCcchhhHHHHHHHHHHHhcCCccccc-cccccccccccccccchhhHHHhhhhhcccccccchhhcccccc
Confidence 89999999999999999999999999999987764 889999999999999998888888876643 34566788
Q ss_pred hhhhhhHHHHHHHHHcCCCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhcccccc
Q 018905 192 PRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT 267 (349)
Q Consensus 192 ~~~~~~~~a~~ia~~lgl~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~ 267 (349)
+..+++.++.+++..||++||+++|+++|+|++.||.+|+++|+.|++|++||||+|..++|..+.+|..+++|+.
T Consensus 139 ~~~~~~~~a~~ia~~~g~~Gp~~tv~~ACaS~~~Ai~~A~~~i~~G~~d~~ivGG~d~~l~p~~~~~F~~~~alS~ 214 (216)
T d1tqya1 139 DYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTA 214 (216)
T ss_dssp HHHSTTHHHHHHHHHHTCCSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC
T ss_pred cccCchHHHHHHHHhcCccccceeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHCCCCCc
Confidence 8889999999999999999999999999999999999999999999999999999999899999999999999984
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.54 E-value=5.1e-15 Score=126.00 Aligned_cols=78 Identities=42% Similarity=0.706 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCCeEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 271 GTPQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 271 ~~~~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
++|++.|||||.+++||++|||++++||++.++|+++|.+||++|.|++.++|+.+.+.+.+.+.++.+++++||++|
T Consensus 1 ~~P~~~~rpFD~~adG~v~gEGa~~~vL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~~~~~al~~a 78 (205)
T d1tqya2 1 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDES 78 (205)
T ss_dssp SCGGGCCCTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCCCCEeeEeeEEEEEEeEHHHHHHCCCceEEEEEeeEccccccccCcccccccccchhhhhHHhhh
Confidence 358899999999999999999999999999999999999999999999999999999888999999999999999875
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.41 E-value=1.4e-13 Score=115.80 Aligned_cols=73 Identities=36% Similarity=0.492 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCCcceecceeeeEEeCChHHHHhcCC-eEeEEEEeEEeeCCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 018905 273 PQEASRPFDCGRDGFVIGEGSGVLVLEELEHAKKRGA-KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQA 348 (349)
Q Consensus 273 ~~~~~~pf~~~~~G~~~gEGAaalvL~~~~~A~~~g~-~~~a~i~g~~~~~d~~~~~~p~~~g~~~~~a~~~Al~~A 348 (349)
|++.|||||.+++|+++|||++++|||++++|+++|+ +||++|.|++.++|+.+.+ +.+.+ ++++|++||++|
T Consensus 2 p~~~~rPFD~~a~G~~~gEGa~~~vLe~~~~A~~rg~~~i~a~i~g~~~~~d~~~~~-~~~~g--~~~~i~~aL~~a 75 (194)
T d1tqyb2 2 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGS-GRPAG--LERAIRLALNDA 75 (194)
T ss_dssp GGGSCCTTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTC-CCCCS--HHHHHHHHHHHH
T ss_pred CCCCcCcccCCCCCEeeEeeEEEEEEeEHHHHHhcCCceeeeeeecccccccccccc-cchhh--hhhhhhhhcccc
Confidence 6789999999999999999999999999999999997 6999999999999987653 34444 588999999875
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=99.37 E-value=2.9e-13 Score=119.44 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+..++.++|+++|+++++|+ .|++|+...... ...++.+++...|
T Consensus 27 ~~dL~~~~~~~~l~~~~i~~~~Id-----~vi~G~~~~~~~--------------------------~~n~ar~~al~ag 75 (268)
T d1m3ka1 27 AHELGATVISAVLERAGVAAGEVN-----EVILGQVLPAGE--------------------------GQNPARQAAMKAG 75 (268)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCTTS--------------------------CSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCc-----EEEEeeccccCc--------------------------chHHHhHHHHHhC
Confidence 567999999999999999999998 899998642110 1235566777777
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
+. -|.++|+..|+||+.||.+|++.|++|.+|++|+||+|++.
T Consensus 76 lp~~vpa~tv~~~C~Sg~~Ai~~Aa~~I~~G~~dvvlagG~EsmS 120 (268)
T d1m3ka1 76 VPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMS 120 (268)
T ss_dssp CCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEEST
T ss_pred CcccccceeecccCcccchHHHHHHHHHhCCCceEEeeccccccc
Confidence 74 38999999999999999999999999999999999999865
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=2.6e-12 Score=113.69 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+..++.++|+++|+++++++ .|++|+...... ....++..++...|
T Consensus 24 ~~dL~~~a~~~al~~~~i~~~~Id-----~vi~G~v~~~g~-------------------------~~~n~aR~~al~aG 73 (273)
T d1ulqa1 24 PDDLLAHALSVLVDRSGVPKEEVE-----DVYAGCANQAGE-------------------------DNRNVARMALLLAG 73 (273)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCSST-------------------------TTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-----EEEEEecccccc-------------------------ccccHHHHHHHHcC
Confidence 567899999999999999999998 999998643211 11235666777777
Q ss_pred CC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 209 FQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 209 l~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
+. -|.++|+..|+||+.||.+|++.|++|..|++|+||+|.+.
T Consensus 74 lp~~vp~~tVn~~CaSg~~Ai~~a~~~I~~G~~d~~lagG~EsmS 118 (273)
T d1ulqa1 74 FPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMS 118 (273)
T ss_dssp CCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESS
T ss_pred CCCccceEEEecccchHHHHHHHHHHHHhcCCCccceeeeccccc
Confidence 73 39999999999999999999999999999999999999854
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=99.32 E-value=2e-12 Score=113.60 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 129 FIAYALCAADEALHD-AKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 129 ~~~l~~~a~~~Al~d-Agi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
...|+..++.++|++ +|+++++|+ .|++|+...... ....++..++...
T Consensus 30 ~~dL~~~~i~~~l~r~agi~~~~Id-----~vi~G~v~~~~~-------------------------~g~n~aR~~al~a 79 (262)
T d1wdkc1 30 AEDMSAHLISKVLERNSKVDPGEVE-----DVIWGCVNQTLE-------------------------QGWNIARMASLMT 79 (262)
T ss_dssp HHHHHHHHHHHHHHHCTTSCGGGEE-----EEEEECSSBSBT-------------------------TTTTHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHee-----EEEEEeeccccc-------------------------ccccchhhhHhhh
Confidence 467899999999985 899999888 899998643210 0113456666666
Q ss_pred CCC--CCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCC
Q 018905 208 GFQ--GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 252 (349)
Q Consensus 208 gl~--Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~ 252 (349)
|+. -|.++|+..|+||+.||.+|++.|++|..|++|+||+|.+..
T Consensus 80 g~p~~vp~~tV~~~C~Sgl~Ai~~aa~~I~sG~~dvvlAgGvEsmS~ 126 (262)
T d1wdkc1 80 QIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGH 126 (262)
T ss_dssp SSCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTT
T ss_pred hcccccchhhccccccHHHHHHHHHHHHHHhhcCCceeeeccccccc
Confidence 663 399999999999999999999999999999999999997543
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=99.26 E-value=7.2e-12 Score=103.15 Aligned_cols=119 Identities=14% Similarity=0.238 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+..|+.+||+++|+++++++ .|++++..+.+ .....+..|...||
T Consensus 49 ~~~ma~~Aa~~aL~~agi~~~dId-----lli~~s~t~~~--------------------------~~p~~a~~v~~~Lg 97 (172)
T d1ub7a1 49 TSDLAFKAVEDLLRRHPGALEGVD-----AVIVATNTPDA--------------------------LFPDTAALVQARFG 97 (172)
T ss_dssp HHHHHHHHHHHHHHHSTTTTTTEE-----EEEEECSSCSE--------------------------EESCHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhhcCcccccce-----EEEEecccccc--------------------------cccchHHHHHHHhc
Confidence 568999999999999999998886 67777754332 11234556777889
Q ss_pred CCCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcce
Q 018905 209 FQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFV 288 (349)
Q Consensus 209 l~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~~ 288 (349)
.+.+++.|..+|++++.+|..|..+|++|..+.+||+++|.. +... . ++.....++
T Consensus 98 ~~~~~~di~~~C~g~~~al~~a~~~~~~~~~~~~Lvv~~e~~-S~~~----------~-------------~~d~~~~~l 153 (172)
T d1ub7a1 98 LKAFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEAL-SKII----------D-------------WNDRATAVL 153 (172)
T ss_dssp CCCEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECG-GGTS----------C-------------TTCHHHHTT
T ss_pred cCccceeehhccccHHHHHHHHhhhhhcCCcceeEEeccccc-cccc----------C-------------CCCcCeEEE
Confidence 888999999999999999999999999999999999999972 1110 0 111123456
Q ss_pred ecceeeeEEeCChH
Q 018905 289 IGEGSGVLVLEELE 302 (349)
Q Consensus 289 ~gEGAaalvL~~~~ 302 (349)
+||||+|+||++.+
T Consensus 154 fGDgAaA~ll~~~~ 167 (172)
T d1ub7a1 154 FGDGGGAAVVGKVR 167 (172)
T ss_dssp BCCEEEEEEEECCC
T ss_pred ecceeEEEEEEEcC
Confidence 89999999998754
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=5.7e-12 Score=104.03 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+.+|+.+||+++|+++++++ .+++++..+... ....+..|...||
T Consensus 51 ~~~la~~Aa~~al~~a~~~~~~Id-----~li~~s~~~~~~--------------------------~P~~a~~v~~~Lg 99 (174)
T d1hnja1 51 VSTMGFEAATRAIEMAGIEKDQIG-----LIVVATTSATHA--------------------------FPSAACQIQSMLG 99 (174)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCSCS--------------------------SSCHHHHHHHHHT
T ss_pred chHHHHHHHHHhhhhccccccccc-----EEEEecCCcccc--------------------------ccchhhhhhhccC
Confidence 567999999999999999999887 788887654321 1234567888899
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
++. +++-|..+|++++.||..|..+|++|..+.+||+++|.. +.. +. +......+
T Consensus 100 l~~~~~~di~~~C~g~~~al~~A~~~i~sg~~~~~Lvv~~e~~-S~~----------~~-------------~~d~~~~~ 155 (174)
T d1hnja1 100 IKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVL-ART----------CD-------------PTDRGTII 155 (174)
T ss_dssp CCSSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECH-HHH----------SC-------------TTCHHHHT
T ss_pred CCchhhhhhhhhhccHHHHHHHHHHHHhcCCcceeEEEeeehh-hcc----------cC-------------CCCCCeEE
Confidence 976 899999999999999999999999999999999999962 111 00 01111245
Q ss_pred eecceeeeEEeCChH
Q 018905 288 VIGEGSGVLVLEELE 302 (349)
Q Consensus 288 ~~gEGAaalvL~~~~ 302 (349)
++||||+|+||++.+
T Consensus 156 lfGDgA~A~vl~~~~ 170 (174)
T d1hnja1 156 IFGDGAGAAVLAASE 170 (174)
T ss_dssp TBCCEEEEEEEEEES
T ss_pred EeceeeEEEEEEeCC
Confidence 789999999999754
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=99.23 E-value=1.4e-11 Score=102.29 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|+++|+++||+++|+++++++ .+++++..+... ....+..+...++
T Consensus 58 ~~~ma~~Aa~~aL~~a~~~~~dId-----~li~~s~~~~~~--------------------------~p~~a~~v~~~l~ 106 (181)
T d1mzja1 58 IQVMGVAASRRALEHAGVDPAEID-----LVVVSTMTNFVH--------------------------TPPLSVAIAHELG 106 (181)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-----EEEEECSCCCCC--------------------------SSCHHHHHHHHHT
T ss_pred HHHHhHHHHHhhhhhccCChhHCe-----EEEEeccCCccc--------------------------cccHHHHHHHhhc
Confidence 577999999999999999999887 788887543321 1123455777788
Q ss_pred CCC-CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCcc
Q 018905 209 FQG-PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 287 (349)
Q Consensus 209 l~G-p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G~ 287 (349)
... +++-|..+|++++.||..|..+|++|..+.+||+++|.. +.. +. ++.....+
T Consensus 107 ~~~~~~~Dv~~~C~g~~~aL~~A~~~i~~~~~~~~LvV~~e~~-s~~----------~~-------------~~d~~~~~ 162 (181)
T d1mzja1 107 ADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERM-TDV----------ID-------------LADRSLSF 162 (181)
T ss_dssp CTTCEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEG-GGG----------SC-------------SSCTTTTT
T ss_pred CCCccceeHHhhhccHHHHHHHHhCHhhcCCCceeEEeeeccc-ccc----------CC-------------CCCcceEE
Confidence 854 889999999999999999999999999999999999962 211 00 11223466
Q ss_pred eecceeeeEEeCChH
Q 018905 288 VIGEGSGVLVLEELE 302 (349)
Q Consensus 288 ~~gEGAaalvL~~~~ 302 (349)
++||||+|+||++.+
T Consensus 163 lfGDGAaA~ll~~~~ 177 (181)
T d1mzja1 163 LFGDGAGAAVVGPSD 177 (181)
T ss_dssp TBCEEEEEEEEEEES
T ss_pred EeeeeeEEEEEEeCC
Confidence 899999999998643
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.17 E-value=6.5e-12 Score=116.30 Aligned_cols=124 Identities=11% Similarity=0.117 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
....|++.|+++||+++|+++++|+ .++++++. ++ .. + ..+.+|+..|
T Consensus 91 ~~~~la~~Aa~~aL~~ag~~~~dId-----~lI~~t~t-~~---------------------~~----P-~~a~~v~~~L 138 (372)
T d1teda_ 91 HAVPLAVDVSKRALAGLPYRAAEIG-----LLVLATST-GF---------------------IA----P-GVDVAIVKEL 138 (372)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEE-----EEEEEESS-CC---------------------CS----S-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCC-----EEEEeccC-CC---------------------CC----c-hHHHHHHhhh
Confidence 4567999999999999999998886 67777643 22 11 1 3456799999
Q ss_pred CCCCCe--eecc-cchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCC
Q 018905 208 GFQGPN--HAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGR 284 (349)
Q Consensus 208 gl~Gp~--~~v~-~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~ 284 (349)
|++... +.+. .+|++++.||..|..+|++|..+.+||+++|.+..... . .+. ++...
T Consensus 139 Gl~~~~~~~~~~~~gC~g~~~aL~~A~~~l~sg~~~~~LVV~~E~~s~~~~----------~------~d~----~~~~~ 198 (372)
T d1teda_ 139 GLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNAV----------F------ADD----INDVV 198 (372)
T ss_dssp TCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGGGCC----------C------CSS----HHHHH
T ss_pred ccCCceeEeeccccCccHHHHHHHHHHHHHhcCCCccceeeeehhhccccc----------C------CCc----chhhh
Confidence 997643 3343 48999999999999999999999999999996221100 0 000 00001
Q ss_pred CcceecceeeeEEeCChHH
Q 018905 285 DGFVIGEGSGVLVLEELEH 303 (349)
Q Consensus 285 ~G~~~gEGAaalvL~~~~~ 303 (349)
..+++||||+|+||++.+.
T Consensus 199 ~~~lfGDGAaA~ll~~~~~ 217 (372)
T d1teda_ 199 IHSLFGDGCAALVIGASQV 217 (372)
T ss_dssp HHHHBCEEEEEEEEEEECT
T ss_pred hhhhhcccceeEEeccCCc
Confidence 2346899999999986543
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=6.3e-11 Score=104.12 Aligned_cols=92 Identities=18% Similarity=0.123 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHC----CCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHH
Q 018905 129 FIAYALCAADEALHDA----KWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVS 204 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dA----gi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia 204 (349)
...|+..++.++++++ ++++++++ .|++|+..... ....++.+++
T Consensus 35 ~~~L~~~~i~~~l~r~~~~~~idp~~Id-----~vi~G~v~~~g--------------------------~~~~~aR~~a 83 (269)
T d1afwa1 35 TDYLLYNFLNEFIGRFPEPLRADLNLIE-----EVACGNVLNVG--------------------------AGATEHRAAC 83 (269)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHTCGGGCC-----CEEEECSSSBG--------------------------GGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccCChhhcC-----EEEeccccccc--------------------------cccccchhhh
Confidence 4668888889998754 68888887 89999854211 1224567777
Q ss_pred HHcCC--CCCeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCC
Q 018905 205 MKYGF--QGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 251 (349)
Q Consensus 205 ~~lgl--~Gp~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~ 251 (349)
...|+ +-|.++|+..|+||++||.+|++.|++|..|++|+||+|.+.
T Consensus 84 l~aglp~~vpa~tVnr~CaSg~~Ai~~Aa~~I~~G~~divlagG~EsmS 132 (269)
T d1afwa1 84 LASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMT 132 (269)
T ss_dssp HHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHH
T ss_pred hhccccccccchhccccchHHHHHHHHHHHHHhhccccceeeeeccccc
Confidence 77777 459999999999999999999999999999999999999853
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.10 E-value=4.3e-11 Score=100.89 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
....|+..|+++||+++|+++++++ .++++++.+. . ++ ..+..+...+
T Consensus 74 ~a~~la~~Aa~~aL~~ag~~~~dId-----~lI~~s~t~~----------------------~----~P-~~aa~v~~~l 121 (200)
T d1u0ma1 74 EAKSRVPAVIQRALDDAELLATDID-----VIIYVSCTGF----------------------M----MP-SLTAWLINEM 121 (200)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCS-----EEEEECSSSC----------------------C----SS-CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCChhhhh-----eEEEeccCCC----------------------C----cc-hhHHHHHHHH
Confidence 3567999999999999999999988 7777775421 1 12 2455788889
Q ss_pred CCCC--Ceeec-ccchhhHHHHHHHHHHHHHcCCCCEEEEeecCC
Q 018905 208 GFQG--PNHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTES 249 (349)
Q Consensus 208 gl~G--p~~~v-~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~ 249 (349)
++.. +.+.+ ..+|++++.+|..|..+|++|..+.+||+++|.
T Consensus 122 g~~~~~~~~~i~~~gC~g~~~al~~A~~~l~~~~~~~vLvv~~e~ 166 (200)
T d1u0ma1 122 GFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEF 166 (200)
T ss_dssp TCCTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred hcCCCeeEeccccchhhHHHHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 9876 45555 579999999999999999999999999999996
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.98 E-value=1.5e-09 Score=93.37 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHc
Q 018905 128 RFIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKY 207 (349)
Q Consensus 128 ~~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 207 (349)
....|+..|+.+||+++|+++++|+ .|+++++.+.. . +.. ...+...+
T Consensus 101 ~~~~la~~Aa~~aL~~a~~~~~dId-----~lI~~t~t~~~----------------------~----p~~-~a~~~~~l 148 (235)
T d1bi5a1 101 EVPRLGKEAAVKAIKEWGQPKSKIT-----HLIVCTTSGVD----------------------M----PGA-DYQLTKLL 148 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCSCGGGCC-----EEEEEESSCCC----------------------S----SCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChhHCc-----EEEEecccCCc----------------------c----Ccc-HHHHHHHH
Confidence 4567999999999999999999988 88888865421 1 112 22344555
Q ss_pred CCCCC--ee-ecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCC
Q 018905 208 GFQGP--NH-AAVTACATGAHSIGDAARMIQFGDSDVMVAGGTES 249 (349)
Q Consensus 208 gl~Gp--~~-~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~ 249 (349)
++... .+ .+..+|++++.+|..|..+|++|..+.+||+++|.
T Consensus 149 ~~~~~~~~~~~~~~~C~g~~~al~~A~~~i~~~~~~~vLvV~~E~ 193 (235)
T d1bi5a1 149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEV 193 (235)
T ss_dssp TCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEEC
T ss_pred hcCCCceEEeeecCccchHHHHHHHHHHHHHcCCCCeEEEEEeee
Confidence 55443 23 34678999999999999999999999999999997
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=98.84 E-value=1e-09 Score=89.49 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCceEEEEeCCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhHHHHHHHHHcC
Q 018905 129 FIAYALCAADEALHDAKWLPSDQGQKERTGVSIGGGIGSISDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYG 208 (349)
Q Consensus 129 ~~~l~~~a~~~Al~dAgi~~~~~~~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 208 (349)
...|++.|+++||++.+ +++++ -+++++..+.. .....+..+...++
T Consensus 50 ~~~ma~~Aa~~al~~~~--~~~id-----~li~~t~~~~~--------------------------~~p~~a~~v~~~lg 96 (166)
T d1xpma1 50 IVSMGANAAKDIITDED--KKKIG-----MVIVATESAVD--------------------------AAKAAAVQIHNLLG 96 (166)
T ss_dssp HHHHHHHHHHTTCCHHH--HHHEE-----EEEEECSSCSB--------------------------SSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcccc--CCCCC-----eEEEecccccc--------------------------ccchhHHHHHHhhc
Confidence 45689999998886643 33443 45555543321 11234566778888
Q ss_pred CCC--CeeecccchhhHHHHHHHHHHHHHcCCCCEEEEeecCCCCChHHHHHHHhccccccccCCCCCCCCCCCCCCCCc
Q 018905 209 FQG--PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 286 (349)
Q Consensus 209 l~G--p~~~v~~acaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pf~~~~~G 286 (349)
+.. .++.+..+|++++.||..|..+|++|..+.+||+++|..... ++ ...-
T Consensus 97 ~~~~~~~~dv~~~C~g~~~al~~A~~~i~~~~~~~alvV~sd~~~~~--------------------------~~-~~~~ 149 (166)
T d1xpma1 97 IQPFARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTARYG--------------------------LN-SGGE 149 (166)
T ss_dssp CCSSCEEEEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEEECCC--------------------------TT-CSSG
T ss_pred cccceEEeeecccHHHHHHHHHHHhhHHhcCCCCeEEEEEEceEecc--------------------------CC-CCCC
Confidence 865 678899999999999999999999999999999999851110 00 0122
Q ss_pred ceecceeeeEEeCC
Q 018905 287 FVIGEGSGVLVLEE 300 (349)
Q Consensus 287 ~~~gEGAaalvL~~ 300 (349)
+++||||+|+||++
T Consensus 150 ~~fGDGA~A~ll~~ 163 (166)
T d1xpma1 150 PTQGAGAVAMVIAH 163 (166)
T ss_dssp GGCEEEEEEEEEEE
T ss_pred ccCCCeeEEEEEec
Confidence 56899999999986
|