Citrus Sinensis ID: 018941

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI
ccccccEEcccEEEEccccHHHHHHHHHHHHHcccccccEEEEEEccccccccccccHHHHHHHHHHHHcEEEEEccccccHHHHHHHHHHcccccccHHHHHHHccEEEEEcEEEcccccccccccccEEEEEccccccccccEEEEccccEEEEEEEEccccccEEEEEEEEEccccEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHccccccccEEEEcccccEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcc
cccccEEccccEEEEEccHHHHHHHHHHHHHcccccEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEEEcccHHHHcEEEEEcccEEEEEEEEEccccccEEEEEEEEcccEEEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHH
mafqkikvanpivemdgdeMTRVFWKSIKDKLIFPFLELDIKYfdlglpnrdatddkVTVESAEATLKYNVAIkcatitpdeARVKEFVLKQMwkspngtirnilngtvfrepiicknvprlipgwtkpicigrhafgdqyratdtviqgpgklklvfvpegkdekteLEVYNFTGEGGVALSMYNTDESIRAFAEASMNtayqkkwplylSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGgyvwacknydgdvqsdFLAQGFGSLGLMTSvlvcpdgktieaeaahgtvtrhyrvhqkggetstnSIASIFAWSRGLAHRYKI
mafqkikvanpivemdgdeMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESaeatlkynvaikcatitpDEARVKEFVLkqmwkspngtirnilngtvfrepiICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTayqkkwplylSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYrvhqkggetstnsiaSIFAWSRGLAHRYKI
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI
*******VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGG*TSTNSIASIFAWSRGLA*****
***Q**K*ANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV*Q******TNSIASIFAWSRGLAHRY**
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI
***QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI
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MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query348 2.2.26 [Sep-21-2011]
P50217416 Isocitrate dehydrogenase N/A no 0.991 0.829 0.927 0.0
P50218415 Isocitrate dehydrogenase N/A no 0.991 0.831 0.930 0.0
Q40345433 Isocitrate dehydrogenase N/A no 1.0 0.803 0.913 0.0
Q06197413 Isocitrate dehydrogenase yes no 0.997 0.840 0.913 0.0
P33198421 Isocitrate dehydrogenase yes no 0.994 0.821 0.731 1e-153
Q4R502452 Isocitrate dehydrogenase N/A no 0.994 0.765 0.731 1e-153
P48735452 Isocitrate dehydrogenase yes no 0.994 0.765 0.731 1e-152
Q04467452 Isocitrate dehydrogenase yes no 0.994 0.765 0.729 1e-152
P54071452 Isocitrate dehydrogenase yes no 0.994 0.765 0.729 1e-152
P56574452 Isocitrate dehydrogenase yes no 0.994 0.765 0.726 1e-152
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/345 (92%), Positives = 331/345 (95%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           MAFQKI V NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYF LGLP+RDATDDKVTV
Sbjct: 1   MAFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+P
Sbjct: 61  ESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIP 120

Query: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
           RL+PGWTKPICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG DEKTE EVYNFTG GGV
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGV 180

Query: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
           ALSMYNTDES+R+FAEASMN A+QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK
Sbjct: 181 ALSMYNTDESVRSFAEASMNMAFQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240

Query: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
           +E AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 YEEAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHR 345
           DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHR
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHR 345
May supply 2-oxoglutarate for amino acid biosynthesis and ammonia assimilation.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Back     alignment and function description
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Back     alignment and function description
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
5764653414 NADP-isocitrate dehydrogenase [Citrus li 1.0 0.840 0.979 0.0
255575226413 NADP-specific isocitrate dehydrogenase, 1.0 0.842 0.956 0.0
213493066414 NADP-dependent isocitrate dehydrogenase 1.0 0.840 0.945 0.0
3811007412 NADP specific isocitrate dehydrogenase [ 1.0 0.844 0.951 0.0
224079726414 predicted protein [Populus trichocarpa] 1.0 0.840 0.945 0.0
2623962412 isocitrate dehydrogenase (NADP+) [Apium 1.0 0.844 0.948 0.0
1750380416 NADP-isocitrate dehydrogenase [Eucalyptu 1.0 0.836 0.942 0.0
269994009416 NADP-dependent isocitrate dehydrogenase 1.0 0.836 0.939 0.0
224135233414 predicted protein [Populus trichocarpa] 1.0 0.840 0.942 0.0
315440250412 NADP-dependent isocitric acid dehydrogen 1.0 0.844 0.936 0.0
>gi|5764653|gb|AAD51361.1|AF176669_1 NADP-isocitrate dehydrogenase [Citrus limon] Back     alignment and taxonomy information
 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/348 (97%), Positives = 346/348 (99%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV
Sbjct: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP
Sbjct: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120

Query: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
           RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV
Sbjct: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180

Query: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
           ALSMYNTDESIR+FAEASMNTAYQKKWPLYLSTKNTILK YDG+FKDIFQEVYEANWKSK
Sbjct: 181 ALSMYNTDESIRSFAEASMNTAYQKKWPLYLSTKNTILKNYDGKFKDIFQEVYEANWKSK 240

Query: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
           FEAAGIWYEHRLIDDMVAYALKSEGGYVWACK+YDG+VQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKDYDGNVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI 348
           DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHR K+
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKL 348

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255575226|ref|XP_002528517.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] gi|223532077|gb|EEF33886.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|213493066|dbj|BAG84436.1| NADP-dependent isocitrate dehydrogenase [Passiflora edulis] Back     alignment and taxonomy information
>gi|3811007|dbj|BAA34112.1| NADP specific isocitrate dehydrogenase [Daucus carota] Back     alignment and taxonomy information
>gi|224079726|ref|XP_002305928.1| predicted protein [Populus trichocarpa] gi|222848892|gb|EEE86439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|2623962|emb|CAA73139.1| isocitrate dehydrogenase (NADP+) [Apium graveolens] Back     alignment and taxonomy information
>gi|1750380|gb|AAB39248.1| NADP-isocitrate dehydrogenase [Eucalyptus globulus] Back     alignment and taxonomy information
>gi|269994009|dbj|BAI50641.1| NADP-dependent isocitrate dehydrogenase [Eucalyptus grandis x Eucalyptus urophylla] Back     alignment and taxonomy information
>gi|224135233|ref|XP_002327598.1| predicted protein [Populus trichocarpa] gi|222836152|gb|EEE74573.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|315440250|gb|ADU20197.1| NADP-dependent isocitric acid dehydrogenase [Pyrus pyrifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
TAIR|locus:2009759410 cICDH "cytosolic NADP+-depende 0.994 0.843 0.899 2.1e-173
TAIR|locus:2020128416 ICDH "isocitrate dehydrogenase 0.997 0.834 0.885 3e-172
TAIR|locus:2222672485 AT5G14590 [Arabidopsis thalian 0.985 0.707 0.822 8e-156
UNIPROTKB|F1PAM3422 IDH2 "Isocitrate dehydrogenase 0.994 0.819 0.731 1.1e-140
UNIPROTKB|F1SK00413 IDH2 "Isocitrate dehydrogenase 0.994 0.837 0.731 1.1e-140
UNIPROTKB|P33198421 IDH2 "Isocitrate dehydrogenase 0.994 0.821 0.731 1.1e-140
UNIPROTKB|P48735452 IDH2 "Isocitrate dehydrogenase 0.994 0.765 0.731 3.9e-140
UNIPROTKB|Q4R502452 IDH2 "Isocitrate dehydrogenase 0.994 0.765 0.731 3.9e-140
ZFIN|ZDB-GENE-031006-1429 idh1 "isocitrate dehydrogenase 0.988 0.801 0.718 6.3e-140
UNIPROTKB|Q04467452 IDH2 "Isocitrate dehydrogenase 0.994 0.765 0.729 8e-140
TAIR|locus:2009759 cICDH "cytosolic NADP+-dependent isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
 Identities = 313/348 (89%), Positives = 333/348 (95%)

Query:     1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
             MAF+KIKVANPIVEMDGDEMTRV WKSIKDKLI PF+ELDIKYFDLGLP+RDATDDKVT+
Sbjct:     1 MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLITPFVELDIKYFDLGLPHRDATDDKVTI 60

Query:    61 ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
             ESAEAT KYNVAIKCATITPDE RV EF LKQMW+SPNGTIRNILNGTVFREPIICKNVP
Sbjct:    61 ESAEATKKYNVAIKCATITPDEGRVTEFGLKQMWRSPNGTIRNILNGTVFREPIICKNVP 120

Query:   121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
             +L+PGWTKPICIGRHAFGDQYRATD VI+GPGKL + F  EGKD KTE EV+ FTGEGGV
Sbjct:   121 KLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLTMTF--EGKDGKTETEVFTFTGEGGV 178

Query:   181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
             A++MYNTDESIRAFA+ASMNTAY+KKWPLYLSTKNTILKKYDGRFKDIFQEVYEA+WKSK
Sbjct:   179 AMAMYNTDESIRAFADASMNTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSK 238

Query:   241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
             ++AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct:   239 YDAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 298

Query:   301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI 348
             DGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHR K+
Sbjct:   299 DGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKL 346
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS;IMP
GO:0006102 "isocitrate metabolic process" evidence=IEA;IMP
GO:0008152 "metabolic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0048046 "apoplast" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=IDA;NAS
GO:0006739 "NADP metabolic process" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006970 "response to osmotic stress" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0051049 "regulation of transport" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2020128 ICDH "isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222672 AT5G14590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK00 IDH2 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P33198 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031006-1 idh1 "isocitrate dehydrogenase 1 (NADP+), soluble" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q04467 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O88844IDHC_MOUSE1, ., 1, ., 1, ., 4, 20.70910.96830.8140nono
Q4R502IDHP_MACFA1, ., 1, ., 1, ., 4, 20.73190.99420.7654N/Ano
Q5R9C5IDHC_PONAB1, ., 1, ., 1, ., 4, 20.71810.96830.8140nono
Q04467IDHP_BOVIN1, ., 1, ., 1, ., 4, 20.72910.99420.7654yesno
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.67150.98850.8410yesno
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.67150.98850.8410yesno
P41562IDHC_RAT1, ., 1, ., 1, ., 4, 20.71510.96830.8140nono
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.73190.99420.7654yesno
Q06197IDHC_SOYBN1, ., 1, ., 1, ., 4, 20.91350.99710.8401yesno
Q75JR2IDHP_DICDI1, ., 1, ., 1, ., 4, 20.67240.98270.7990yesno
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.72910.99420.7654yesno
O13294IDH2_CANTR1, ., 1, ., 1, ., 4, 20.68780.99130.8394N/Ano
Q9XSG3IDHC_BOVIN1, ., 1, ., 1, ., 4, 20.71300.98850.8309nono
Q6XUZ5IDHC_SHEEP1, ., 1, ., 1, ., 4, 20.71510.96830.8140N/Ano
P21954IDHP_YEAST1, ., 1, ., 1, ., 4, 20.69940.98560.8014yesno
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.73190.99420.8218yesno
Q40345IDHP_MEDSA1, ., 1, ., 1, ., 4, 20.91371.00.8036N/Ano
P50217IDHC_SOLTU1, ., 1, ., 1, ., 4, 20.92750.99130.8293N/Ano
P50215IDH_SPHYA1, ., 1, ., 1, ., 4, 20.67050.97980.8399N/Ano
P50218IDHC_TOBAC1, ., 1, ., 1, ., 4, 20.93040.99130.8313N/Ano
Q9Z2K9IDHC_MICME1, ., 1, ., 1, ., 4, 20.71510.96830.8140N/Ano
Q9Z2K8IDHC_MICOH1, ., 1, ., 1, ., 4, 20.71210.96830.8140N/Ano
P56574IDHP_RAT1, ., 1, ., 1, ., 4, 20.72620.99420.7654yesno
O75874IDHC_HUMAN1, ., 1, ., 1, ., 4, 20.71510.96830.8140nono
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.69250.99420.7881yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.983
4th Layer1.1.1.420.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0038019202
isocitrate dehydrogenase (NADP+) (415 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_VIII0421
hypothetical protein (1021 aa)
     •• 0.907
estExt_Genewise1_v1.C_LG_X2288
hypothetical protein (1021 aa)
     •• 0.907
estExt_fgenesh4_pg.C_LG_XVI0781
SubName- Full=Putative uncharacterized protein; (363 aa)
     •••0.900
eugene3.00280188
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (361 aa)
     •••0.900
eugene3.00050378
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (339 aa)
     •• 0.900
gw1.XIV.3318.1
aconitate hydratase 1 (EC-4.2.1.3) (897 aa)
     •  0.899
eugene3.01810009
aconitate hydratase 1 (EC-4.2.1.3) (899 aa)
     •  0.899
eugene3.00570034
aconitate hydratase 1 (EC-4.2.1.3) (899 aa)
     •  0.899
estExt_fgenesh4_pm.C_LG_IX0030
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (372 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_VII0812
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (367 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
PLN00103410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 0.0
PTZ00435413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 0.0
PLN03065483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.0
PRK08299402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 0.0
TIGR00127409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 0.0
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-144
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 1e-87
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 6e-42
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 2e-05
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 1e-04
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 4e-04
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 9e-04
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
 Score =  797 bits (2059), Expect = 0.0
 Identities = 336/348 (96%), Positives = 342/348 (98%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           MAF+KIKVANPIVEMDGDEMTRV WKSIKDKLIFPFL+LDIKYFDLGLPNRDATDDKVTV
Sbjct: 1   MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEATLKYNVAIKCATITPDEARVKEF LKQMWKSPNGTIRNILNGTVFREPIICKN+P
Sbjct: 61  ESAEATLKYNVAIKCATITPDEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIP 120

Query: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
           RL+PGWTKPICIGRHAFGDQYRATD VI+GPGKLKLVFVPEGKDEKTELEVYNFTG GGV
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKTELEVYNFTGAGGV 180

Query: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
           ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA WKSK
Sbjct: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSK 240

Query: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
           FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI 348
           DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHR K+
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKL 348

Length = 410
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 348
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
KOG1526422 consensus NADP-dependent isocitrate dehydrogenase 100.0
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 95.02
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 94.36
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.29
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.28
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.19
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 94.08
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 94.06
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 93.97
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 93.91
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 93.81
PF03971 735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 92.99
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 91.86
TIGR00178 741 monomer_idh isocitrate dehydrogenase, NADP-depende 90.72
COG2838 744 Icd Monomeric isocitrate dehydrogenase [Energy pro 80.6
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-106  Score=774.88  Aligned_cols=295  Identities=20%  Similarity=0.194  Sum_probs=266.6

Q ss_pred             ccccEEEECCCCchHHHHHHHHHHHhcC---CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchh
Q 018941            8 VANPIVEMDGDEMTRVFWKSIKDKLIFP---FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR   84 (348)
Q Consensus         8 m~~~I~vi~GDGIGpEv~~~~~~~~~~~---~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~   84 (348)
                      |+++|++|||||||||||+++++++.+.   +++|+|+++++|.++|++||.++|++|+++|+++||+||||+++|....
T Consensus         2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~   81 (348)
T COG0473           2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP   81 (348)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence            5689999999999999999999765444   3899999999999999999999999999999999999999999994321


Q ss_pred             hhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC--CCCEEEEecccCccccccceeeeCCCceeeeeecCC
Q 018941           85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG  162 (348)
Q Consensus        85 ~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~--~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~  162 (348)
                      .     ..+.+|++++|||+||||||+||+  |++|++++..  ++|||||||||||+|+|.+++...++          
T Consensus        82 ~-----~~~~~~~ll~lRk~l~lyANlRP~--k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~----------  144 (348)
T COG0473          82 L-----PRPERGLLLALRKELDLYANLRPA--KSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGG----------  144 (348)
T ss_pred             C-----CCcccchHHHHHHhcCceeeeeec--ccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCC----------
Confidence            1     124567889999999999999998  7888887765  47999999999999999876311110          


Q ss_pred             CCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 018941          163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF  241 (348)
Q Consensus       163 g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~  241 (348)
                                     +.++++++|||.++|||+|+|||+|++| +||||+|||+|||+.++++|+++|+||+ ++|    
T Consensus       145 ---------------eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~y----  204 (348)
T COG0473         145 ---------------EVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEY----  204 (348)
T ss_pred             ---------------eEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcC----
Confidence                           1356789999999999999999999999 6999999999999999999999999999 799    


Q ss_pred             cCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcc
Q 018941          242 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV  320 (348)
Q Consensus       242 ~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~  320 (348)
                        |||+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+||||+|++..++||||+||||||    
T Consensus       205 --Pdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPD----  278 (348)
T COG0473         205 --PDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPD----  278 (348)
T ss_pred             --CCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCccc----
Confidence              999999999999999999999999 9999999999999999999999999999999984326999999999999    


Q ss_pred             cccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941          321 HQKGGETSTNSIASIFAWSRGLAHRYK  347 (348)
Q Consensus       321 ~iaGk~i~ANP~a~IlS~ammL~~lg~  347 (348)
                       |||||| |||+|+|||++|||+|+|+
T Consensus       279 -IAGkgi-ANPiA~IlS~aMML~~~g~  303 (348)
T COG0473         279 -IAGKGI-ANPIATILSAAMMLRHLGE  303 (348)
T ss_pred             -ccCCCc-cChHHHHHHHHHHHHHhCC
Confidence             999999 9999999999999999986

>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-154
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-150
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 1e-150
3inm_A425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-150
3map_A422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 1e-150
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 1e-149
3us8_A427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 1e-145
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 1e-143
4hcx_A409 Structure Of Icdh-1 From M.tuberculosis Complexed W 1e-138
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 1e-112
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 1e-106
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 7e-96
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  542 bits (1396), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 254/347 (73%), Positives = 290/347 (83%), Gaps = 1/347 (0%)
Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60
Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120
Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 181
           L+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV 
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVG 179
Query: 182 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241
           + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239
Query: 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301
           +   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299
Query: 302 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI 348
           GKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR K+
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKL 346
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 1e-172
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 1e-171
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 1e-168
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 1e-165
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 1e-165
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 1e-159
1itw_A 741 Isocitrate dehydrogenase; greece KEY motif, oxidor 4e-16
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 2e-15
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 1e-04
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 1e-06
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 2e-06
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 5e-06
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 2e-05
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 2e-05
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 2e-05
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 7e-05
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 1e-04
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 1e-04
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 2e-04
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 8e-04
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
 Score =  484 bits (1246), Expect = e-172
 Identities = 254/347 (73%), Positives = 290/347 (83%), Gaps = 1/347 (0%)

Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60

Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120

Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 181
           L+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV 
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVG 179

Query: 182 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241
           + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239

Query: 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301
           +   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299

Query: 302 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYKI 348
           GKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR K+
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKL 346
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 94.73
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 94.72
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 94.6
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 94.52
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 93.92
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 92.91
1itw_A 741 Isocitrate dehydrogenase; greece KEY motif, oxidor 92.89
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=1e-108  Score=824.34  Aligned_cols=344  Identities=72%  Similarity=1.182  Sum_probs=309.4

Q ss_pred             ccccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCC
Q 018941            2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD   81 (348)
Q Consensus         2 ~~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~   81 (348)
                      .|+||||+++|++|||||||||||+++++++..++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.
T Consensus        23 ~~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~  102 (427)
T 3us8_A           23 MMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPD  102 (427)
T ss_dssp             --CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred             ccccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCC
Confidence            47899999999999999999999999998777778999999999999999999999999999999999999999999998


Q ss_pred             chhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecC
Q 018941           82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE  161 (348)
Q Consensus        82 ~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~  161 (348)
                      ..+++++.+.++|+|+|++|||+||||+|+||+.++++|++.+++++|||||||||||+|+|+|+++.+++..++.|.++
T Consensus       103 ~~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~  182 (427)
T 3us8_A          103 EGRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGE  182 (427)
T ss_dssp             HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred             ccccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecc
Confidence            76666777778899999999999999999999866899988877889999999999999999999877677666666655


Q ss_pred             CCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 018941          162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF  241 (348)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~  241 (348)
                      .| ......++++++ .+++++++|||+++|||+|+||+||++|++|||+|||+||||.|||+|+++|+|||+++|.++|
T Consensus       183 ~G-~~~~~~~~~~~~-~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~  260 (427)
T 3us8_A          183 DG-QTIEHDVYDAPG-AGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQF  260 (427)
T ss_dssp             TS-CEEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred             cc-ccccccccccCC-CcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCcccc
Confidence            44 111112223332 3466788899999999999999999999999999999999999999999999999955997777


Q ss_pred             cCCCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCccc
Q 018941          242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH  321 (348)
Q Consensus       242 ~~p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~  321 (348)
                      .+|+|+++++|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+|||||||++++
T Consensus       261 ~~~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~  340 (427)
T 3us8_A          261 KAEKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQH  340 (427)
T ss_dssp             HHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH
T ss_pred             CCCCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchh
Confidence            77899999999999999999999999999999999999999999999999999999998753499999999999999999


Q ss_pred             ccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941          322 QKGGETSTNSIASIFAWSRGLAHRYK  347 (348)
Q Consensus       322 iaGk~i~ANP~a~IlS~ammL~~lg~  347 (348)
                      |||||++|||+|+|||++|||+|||+
T Consensus       341 iAGk~i~ANP~A~IlS~ammL~hlG~  366 (427)
T 3us8_A          341 QKGEETSTNSIASIFAWTRGLAHRAK  366 (427)
T ss_dssp             HTTCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceeCHHHHHHHHHHHHHHhcc
Confidence            99999889999999999999999985
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 348
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-114
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-114
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 9e-34
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 2e-27
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 7e-25
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-21
d1itwa_ 740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 6e-21
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 6e-20
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 3e-18
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-15
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  335 bits (860), Expect = e-114
 Identities = 253/346 (73%), Positives = 288/346 (83%), Gaps = 1/346 (0%)

Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60

Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120

Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 181
           L+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF    GV 
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAG-GVG 179

Query: 182 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241
           + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239

Query: 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301
           +   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299

Query: 302 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347
           GKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR K
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGK 345
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1itwa_ 740 Monomeric isocitrate dehydrogenase {Azotobacter vi 98.18
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 96.08
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.6e-95  Score=708.99  Aligned_cols=294  Identities=17%  Similarity=0.148  Sum_probs=262.8

Q ss_pred             ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhHHH
Q 018941           10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV   89 (348)
Q Consensus        10 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~~   89 (348)
                      ++|++|||||||||||+++++++.+...+++|+++++|+++|+++|+++|++|+++|+++|++|+||+++|.....    
T Consensus         2 ~kI~vlpGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~G~~lp~et~~~~~~~daiL~G~vg~p~~~~~----   77 (337)
T d1w0da_           2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPSG----   77 (337)
T ss_dssp             CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCTT----
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHhhCCcEEEEEeeehhhHHhhCCcCcHHHHHHHHhCCeEEECCCCCCCCCCc----
Confidence            4799999999999999999976656678999999999999999999999999999999999999999999853211    


Q ss_pred             hhhcCCCcchHHhhhcCceEEeecccccCCCCCCCC----CCCCEEEEecccCccccccceeeeCCCceeeeeecCCCCc
Q 018941           90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG----WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDE  165 (348)
Q Consensus        90 l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~----~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~  165 (348)
                        ....|+++.||++||||+|+||+  +.+|++..+    .++|+|||||||||+|+|.++... ++.            
T Consensus        78 --~~~~~~~l~LR~~ldlyaniRP~--r~~~g~~~~~~~~~~vD~vivREnteG~Y~g~~~~~~-~~~------------  140 (337)
T d1w0da_          78 --VLERGLLLRLRFELDHHINLRPA--RLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIR-VGT------------  140 (337)
T ss_dssp             --HHHHHTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEES-TTS------------
T ss_pred             --ccccchHHHHHHHhcccceeeeE--eecCccccccccCCCcCeeeHhhhhcCccccCCCeee-cCC------------
Confidence              12357889999999999999998  566655433    247999999999999999887542 221            


Q ss_pred             cchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCC
Q 018941          166 KTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG  245 (348)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~  245 (348)
                                .++.+...+++|+.+++||+|+||+||++|+++||+|||+|||+.++|+|+++++|++ ++|      |+
T Consensus       141 ----------~~~~a~~~~~~t~~~~~Ri~~~Af~~A~~~r~~Vt~v~KaNv~~~t~g~f~~~~~~va-~~y------p~  203 (337)
T d1w0da_         141 ----------PNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVG-ECY------PD  203 (337)
T ss_dssp             ----------TTCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHH-TTC------TT
T ss_pred             ----------CceEEEEEEeecchheeehhhhhhhHhhccCceEEEEECcchhhhhHHHHHHHHHHHh-hcC------Cc
Confidence                      0123556789999999999999999999999999999999999999999999999998 699      99


Q ss_pred             ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCC-ceeeecCCcccCCCCccccc
Q 018941          246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQK  323 (348)
Q Consensus       246 I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~-~~~fEp~HGSApd~~~~~ia  323 (348)
                      |++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++. .+||||+||||||     ||
T Consensus       204 i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~~a~fEp~HGsApd-----ia  278 (337)
T d1w0da_         204 VEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPD-----IA  278 (337)
T ss_dssp             SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGG-----GT
T ss_pred             chhhhhhHHHHHHHHHhcccccceeeccHHHHHHHHHHHHHhcCCcccCCccccccccccceecccccCchhh-----hc
Confidence            9999999999999999999999 999999999999999999999999999999998752 5899999999999     99


Q ss_pred             CCCCCcChhHHHHHHHHHHHhhhc
Q 018941          324 GGETSTNSIASIFAWSRGLAHRYK  347 (348)
Q Consensus       324 Gk~i~ANP~a~IlS~ammL~~lg~  347 (348)
                      |||+ |||+|||||++|||+|||+
T Consensus       279 Gk~i-ANP~a~IlS~amML~~lg~  301 (337)
T d1w0da_         279 GQGI-ADPTAAIMSVALLLSHLGE  301 (337)
T ss_dssp             TSSC-SCCHHHHHHHHHHHHHTTC
T ss_pred             CCCc-cCcHHHHHHHHHHHHHcCC
Confidence            9999 9999999999999999985
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure