Citrus Sinensis ID: 018971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MQAGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL
Secondary Structure (PSIPRED)
cccccccEEEEEccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHccccccHHHHcccccccccccccccccEEcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHccccEEEEEccccccccEEEccccccccccccEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccHHcHcEEEEcccccccccccEEEEEEccccccEEEEcccccccccEcEEEEEEcccccccccccccccccccccccccccccccHEEEEccccccccEEEEEEEccccEEEEEccccccccEEEccccccccccccccEEEEEEEEEEccccccccccHHHHHHHHccccHHccccccccEEEEEEEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEEcccccccEEEEEEcccccccccEEEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
MQAGYANMIVSTSICACAKNVvnlggrfqgqmggnicgvtyrgpsssccfylcsgqskknyagisrtisssslnvlqpfqatcfspgltkprcnlrpltirsfigsrgsqkrHIEISLACRSMKMrllvpsqgvlpklklnagpidwpkgcasagLICGLLVCYSSskahaeaadekedgeedydlsnvkyshgkkvytdysvigipgdgrCLFRAVAHGAclragkpapsvsIQRELADDLRAKVADEFIKRReetewfiegdfdlyvsqirkphvwggepellmashvlrmpitvymhdkdaggLISIAEYGqeygkekpirVLYHGfghydalqnlgheggiskl
Flexible Loop (DISEMBL)
MQAGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCfspgltkprcnlRPLTIrsfigsrgsqkrhIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAadekedgeedydlsnvkyshgkkvyTDYSVIGIPGDGRCLFRAVAHGACLragkpapsvsiqreLADDLRAKVADEFIkrreetewfiegdfDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALqnlgheggiskl
Low Complexity Region (SEG)
MQAGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKahaeaadekedgeedydLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL
Disordered region (IsUnstruct)
****YANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYS*********************SNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNL*********
Disordered Region (DISOPRED)
***GY*N*IVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSC****************************************************************************************************************************************************VYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGL***A******GKEKPIRVLYHGFGHYDAL************
Disordered Region (DISEMBL)
MQAGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSS*****************DLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL
Disordered Region (DISPRO)
**AGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTK**CNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSS************************SHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNL*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQAGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q8LBZ4	317	OTU domain-containing pro	yes	no	0.885	0.971	0.483	7e-81
Q6GM06	294	OTU domain-containing pro	N/A	no	0.488	0.578	0.261	5e-09
Q7L8S5	288	OTU domain-containing pro	yes	no	0.370	0.447	0.324	2e-07
Q5M8L0	294	OTU domain-containing pro	yes	no	0.514	0.608	0.245	6e-06
Q8N6M0	293	OTU domain-containing pro	no	no	0.370	0.440	0.273	1e-05
Q7ZX21	513	OTU domain-containing pro	N/A	no	0.330	0.224	0.253	1e-05
Q7ZV00	293	OTU domain-containing pro	no	no	0.393	0.467	0.296	2e-05
Q96G74	571	OTU domain-containing pro	no	no	0.341	0.208	0.259	2e-05
Q640H3	518	OTU domain-containing pro	N/A	no	0.330	0.222	0.253	3e-05
Q6GL44	518	OTU domain-containing pro	no	no	0.330	0.222	0.253	5e-05

>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1

 Score =  301 bits (770), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 165/341 (48%), Positives = 215/341 (63%), Gaps = 33/341 (9%)

Query: 8   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 67
           MI  + I  C++N +++    +  +G  + GV   G S   C+ L SG S+++Y G   +
Sbjct: 2   MICYSPITTCSRNAISI----KRHLGSRLYGVVAHGSSKFSCYSLLSGLSRRHYTGFRVS 57

Query: 68  ISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRL 127
           +S+      +P  ++    GL       RP           + K  +E+S       M+ 
Sbjct: 58  VSN------RP--SSWHDKGLFGSVLINRPTV---------APKEKLEVSFLSPEANMKC 100

Query: 128 LVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK--AHAEAADEKEDGEEDYD 185
                    K++ N   +      A  G+I  LLVCYSS+   A+A+++ +K+     + 
Sbjct: 101 --------SKIESNMRNLYCYSRFAYTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHH 152

Query: 186 LSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAK 245
            S+ K+ +GK+VYTDYS+IGIPGDGRCLFR+VAHG CLR+GK AP   +QRELAD+LR +
Sbjct: 153 SSDGKFHNGKRVYTDYSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTR 212

Query: 246 VADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAG 305
           VADEFI+RR+ETEWF+EGDFD YV QIR PHVWGGEPEL MASHVL+MPITVYM D  AG
Sbjct: 213 VADEFIQRRQETEWFVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAG 272

Query: 306 GLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGIS 346
           GLISIAEYGQEYGK+ PIRVLYHGFGHYDAL  L HE   S
Sbjct: 273 GLISIAEYGQEYGKDDPIRVLYHGFGHYDAL--LLHESKAS 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 25/195 (12%)

Query: 162 VCYSSSKAHAEAADEKEDGE-----EDYDLSNVKYSHGKKVYT-----DYSVIGIPGDGR 211
           V  +  +   +AA EKE  +     E  +LS  ++   +K+       +  +  IP DG 
Sbjct: 101 VSKAQKRREKKAAQEKERDDRIAEAEIANLSGARHLESQKLAQILAERELQIRQIPSDGH 160

Query: 212 CLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD--EFIKRREETEWFIEGDFDLYV 269
           C++RA+ H      G      +++ + AD ++ +  D   F+      + + + +F  Y 
Sbjct: 161 CMYRAIEHQLN-EQGNSLTVANLRSQTADYMQKRAEDFLPFLTNSSTGDMYTQEEFQKYC 219

Query: 270 SQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY-- 327
           + I     WGG+ EL   SH+L+ PI V      A  L  +   G+EY   KPI ++Y  
Sbjct: 220 TDIVNTPAWGGQLELRALSHILKTPIEVIQ----AESLPIV--IGEEYSN-KPITLVYMR 272

Query: 328 HGFG---HYDALQNL 339
           H +G   HY++++ L
Sbjct: 273 HAYGLGEHYNSVEQL 287

Xenopus laevis (taxid: 8355)

>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 22/151 (14%)

Query: 205 GIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFI---KRREETEWFI 261
            IP DG C++RA+           + SV + R        K  DEF+      E ++ F 
Sbjct: 145 AIPADGHCMYRAIQDQLVF-----SVSVEMLRCRTASYMKKHVDEFLPFFSNPETSDSFG 199

Query: 262 EGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEK 321
             DF +Y   I +   WGG+ EL   SHVL+ PI V     D+  LI     G+EY K K
Sbjct: 200 YDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIEVI--QADSPTLI----IGEEYVK-K 252

Query: 322 PIRVLYHGFG-----HYDALQNL--GHEGGI 345
           PI ++Y  +      HY+++  L  G  GG+
Sbjct: 253 PIILVYLRYAYSLGEHYNSVTPLEAGAAGGV 283

Homo sapiens (taxid: 9606)

>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 37/216 (17%)

Query: 141 NAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGE-----EDYDLSNVKYSHGK 195
           N  P+  P+   +              +   +AA EKE  E     E  +LS  ++   +
Sbjct: 92  NEAPVQQPRQSKA------------QKRREKKAAQEKERDERIAEAEIANLSGARHLESQ 139

Query: 196 KV-----YTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD-- 248
           K+       +  +  IP DG C++RA+ H    R G      +++ + AD ++    D  
Sbjct: 140 KLARILAERELQIRQIPSDGHCMYRAIEHQLRER-GNDLTVANLRSQTADYMQNHAEDFL 198

Query: 249 EFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLI 308
            F+      + + + +F  Y + I     WGG+ EL   SH+L+  I V   +      I
Sbjct: 199 PFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAIEVIQAE---SSPI 255

Query: 309 SIAEYGQEYGKEKPIRVLY--HGFG---HYDALQNL 339
            I   G+EY   K I ++Y  H +G   HY++++ L
Sbjct: 256 VI---GEEYSS-KAITLVYMRHAYGLGEHYNSVELL 287

Xenopus tropicalis (taxid: 8364)

>sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 17/146 (11%)

Query: 202 SVIGIPGDGRCLFRAVAHGACLRAGKPAPSV-SIQRELADDLRAKVAD--EFIKRREETE 258
            +  IP DG C+++A+     L+    A +V +++ + A+ +++ V D   F+      +
Sbjct: 148 EIKQIPSDGHCMYKAIEDQ--LKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGD 205

Query: 259 WFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYG 318
            +   +F  Y   I     WGG+ EL   SH+L+ PI +     D+  +I     G+EY 
Sbjct: 206 MYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEII--QADSPPII----VGEEYS 259

Query: 319 KEKPIRVLY--HGFG---HYDALQNL 339
           K KP+ ++Y  H +G   HY+++  L
Sbjct: 260 K-KPLILVYMRHAYGLGEHYNSVTRL 284

Homo sapiens (taxid: 9606)

>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 268
           DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct: 174 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 222

Query: 269 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 328
           +++ RK +  G   E+   + +   P+ VY +  +         +G +  +++PIRV YH
Sbjct: 223 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTF----HGIQKNEDEPIRVSYH 278

Query: 329 GFGHYDALQN 338
              HY+++ N
Sbjct: 279 RNIHYNSVVN 288

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 15/152 (9%)

Query: 195 KKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD--EFIK 252
           K V     +  I  DG C++RAV H    R G       ++ + A  +R+   D   F+ 
Sbjct: 141 KLVERHLQIKEISSDGHCMYRAVEHQLTER-GLALGLKELRDQTAQYMRSHADDFMPFLT 199

Query: 253 RREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAE 312
                + +   +F+ Y S +     WGG+ EL   S VL++PI V   D      I+I  
Sbjct: 200 NPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQAD---SPCITI-- 254

Query: 313 YGQEYGKEKPIRVLY--HGFG---HYDALQNL 339
            G+EY K K I ++Y  H +G   HY++++ L
Sbjct: 255 -GEEYDKPK-ITLIYMRHAYGLGEHYNSVEPL 284

Danio rerio (taxid: 7955)

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 268
           DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct: 221 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 269

Query: 269 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 327
           +++ RK +  G   E+   + +   P+ VY +      +  I  + G    +++PIRV Y
Sbjct: 270 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSY 329

Query: 328 HGFGHYDALQN 338
           H   HY+++ N
Sbjct: 330 HRNIHYNSVVN 340

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 268
           DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct: 179 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 227

Query: 269 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 328
           +++ RK +  G   E+   + +   P+ VY +  +         +G +  +++PIRV YH
Sbjct: 228 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTF----HGIQQNEDEPIRVSYH 283

Query: 329 GFGHYDALQN 338
              HY+++ N
Sbjct: 284 RNIHYNSVVN 293

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 268
           DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct: 179 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 227

Query: 269 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 328
           +++ RK +  G   E+   + +   P+ VY +  +         +G +  +++PIRV YH
Sbjct: 228 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTF----HGIQQNEDEPIRVSYH 283

Query: 329 GFGHYDALQN 338
              HY+++ N
Sbjct: 284 RNIHYNSVVN 293

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
359481937	340	PREDICTED: OTU domain-containing protein	0.968	0.991	0.636	1e-123
255587443	343	cysteine-type peptidase, putative [Ricin	0.977	0.991	0.595	1e-111
224139840	319	predicted protein [Populus trichocarpa]	0.908	0.990	0.618	1e-108
147779061	806	hypothetical protein VITISV_002512 [Viti	0.755	0.326	0.701	1e-107
363806736	339	uncharacterized protein LOC100810338 [Gl	0.931	0.955	0.601	2e-99
449437605	286	PREDICTED: OTU domain-containing protein	0.801	0.975	0.548	4e-90
224120200	223	predicted protein [Populus trichocarpa]	0.617	0.964	0.703	2e-85
297817112	313	hypothetical protein ARALYDRAFT_486235 [	0.867	0.964	0.495	1e-81
30694718	317	Cysteine proteinases-like protein [Arabi	0.885	0.971	0.483	4e-79
297739716	189	unnamed protein product [Vitis vinifera]	0.540	0.994	0.740	1e-77

>gi|359481937|ref|XP_003632695.1| PREDICTED: OTU domain-containing protein At3g57810-like [Vitis vinifera]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/344 (63%), Positives = 262/344 (76%), Gaps = 7/344 (2%)

Query: 8   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSK--KNYAGIS 65
           MI    I  CA+N+V L G  Q QM  +IC +  +GPSSS  FY  +G SK    +  +S
Sbjct: 1   MINCYPISTCARNIVRLSGCVQRQMSSHICSLVSQGPSSSFSFYFYTGHSKPKNTFMSVS 60

Query: 66  RTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKM 125
            T S SS+     FQ +CF  GL+K R + R LT++S IGSRG  KR + ISL C++M +
Sbjct: 61  ETFSCSSITAFHTFQGSCFYSGLSKRRGSSRSLTVKSLIGSRGPSKRSLNISLTCQNMNV 120

Query: 126 RLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK-AHAEAADEKEDGEEDY 184
           RLLVP QGVLPK+K N G + WP+GCASAGL+  LLVCYSSS+  HAE+A +KED + + 
Sbjct: 121 RLLVPKQGVLPKIKCNVGSVSWPQGCASAGLMFALLVCYSSSEPVHAESAQKKEDKKGEC 180

Query: 185 DLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRA 244
             +    SHGKKVYTDYS+ GIPGDGRCLFR+V HGACLR+GKPAPS S QRELAD+LRA
Sbjct: 181 YTN----SHGKKVYTDYSITGIPGDGRCLFRSVVHGACLRSGKPAPSASCQRELADELRA 236

Query: 245 KVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDA 304
           +V DEFI+RR ETEWFIEGDFD YVSQ+RKPHVWGGEPEL MASHVL+MPITVYM+DKD+
Sbjct: 237 EVVDEFIRRRSETEWFIEGDFDTYVSQMRKPHVWGGEPELFMASHVLQMPITVYMYDKDS 296

Query: 305 GGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL 348
           GGLI+IAEYGQEYGKE PIRVLYHGFGHY++LQ  G +G  S+L
Sbjct: 297 GGLIAIAEYGQEYGKENPIRVLYHGFGHYESLQIPGKKGAKSRL 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587443|ref|XP_002534273.1| cysteine-type peptidase, putative [Ricinus communis] gi|223525596|gb|EEF28110.1| cysteine-type peptidase, putative [Ricinus communis]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/344 (59%), Positives = 250/344 (72%), Gaps = 4/344 (1%)

Query: 8   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYA--GIS 65
           MIV + I   A+ VV L G  Q  MG  I  +   G S+SCCF  C     K+YA   IS
Sbjct: 1   MIVCSPISTYARKVVYLSGCAQ-HMGSTIFNMVSNGQSTSCCFCSCRAHLSKSYARLSIS 59

Query: 66  RTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKM 125
           +T SS S+   Q         G  K   + + +T++    +RG  K+H  +SLA +++ M
Sbjct: 60  KTFSSPSVGTCQTSNKNFSGSGSAKQSGSWQSITVKGLFNTRGPLKKHFNLSLAYQNLNM 119

Query: 126 RLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK-AHAEAADEKEDGEEDY 184
           R  +  +G+L K+K N G I W + CAS GLICGLLVCYSSS+   AEAA  ++D E++ 
Sbjct: 120 RFSLSKRGMLSKIKDNVGSISWAQECASTGLICGLLVCYSSSEPTRAEAAAREKDEEDNS 179

Query: 185 DLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRA 244
           DLS VK+SHGK+VYTDYS+ GIPGDGRCLFR+VAHGA LR GKPAPS S+QRELADDLRA
Sbjct: 180 DLSYVKFSHGKRVYTDYSITGIPGDGRCLFRSVAHGASLRTGKPAPSESLQRELADDLRA 239

Query: 245 KVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDA 304
           +VADEFI+RR+ETEWFIEGDFD YV+Q+RKPHVWGGEPEL MASHVL+MPITVYM+D++A
Sbjct: 240 RVADEFIRRRQETEWFIEGDFDTYVAQMRKPHVWGGEPELFMASHVLKMPITVYMYDQNA 299

Query: 305 GGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL 348
            GLISIAEYG+EYGK+ PIRVLYHGFGHYDALQ  G +GG  KL
Sbjct: 300 RGLISIAEYGEEYGKDNPIRVLYHGFGHYDALQIPGRKGGKPKL 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139840|ref|XP_002323302.1| predicted protein [Populus trichocarpa] gi|222867932|gb|EEF05063.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/320 (61%), Positives = 242/320 (75%), Gaps = 4/320 (1%)

Query: 32  MGGNICGVTYRGPSSSCCF--YLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLT 89
           MG  I  V   G ++SCCF  Y    +S  +   +S+T S  S++  Q  Q+ CF   LT
Sbjct: 1   MGSTILNVVSGGQTTSCCFSSYPGLSRSSYSRLSVSKTFSCPSIS-YQTIQSNCFGSVLT 59

Query: 90  KPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPK 149
           K R +L+  +++  + SRG  KR   ISL C+ M +R  V  QGVL K+  N G I W +
Sbjct: 60  KQRADLQSFSVKGVVRSRGPLKRQFNISLPCQIMNLRFSVSKQGVLSKINDNTGSISWSQ 119

Query: 150 GCASAGLICGLLVCYSSSK-AHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPG 208
           G  + G+I GLLVCYSSS+  HAEAA  K + E++ +LS++K+SHGK+VY DYS+IGIPG
Sbjct: 120 GYPTTGIIFGLLVCYSSSEPTHAEAATHKNEEEDNCNLSDIKFSHGKEVYRDYSIIGIPG 179

Query: 209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 268
           DGRCLFR+VAHGAC+R+GKPAPS ++QRELADDLR+KVADEFIKRREETEWFIEG+FD Y
Sbjct: 180 DGRCLFRSVAHGACIRSGKPAPSENLQRELADDLRSKVADEFIKRREETEWFIEGNFDTY 239

Query: 269 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 328
           VS+IRKPHVWGGEPELLMASHVL+MPITVYM DK++GGLISIAEYGQEYGKE PIR++YH
Sbjct: 240 VSRIRKPHVWGGEPELLMASHVLKMPITVYMDDKNSGGLISIAEYGQEYGKEDPIRIIYH 299

Query: 329 GFGHYDALQNLGHEGGISKL 348
           GFGHYDALQ     GG SKL
Sbjct: 300 GFGHYDALQFPRTRGGKSKL 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/268 (70%), Positives = 222/268 (82%), Gaps = 5/268 (1%)

Query: 82  TCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLN 141
           +CF  GL+K R + R LT++S IGSRG  KR + ISL C++M +RLLVP QGVLPK+K N
Sbjct: 543 SCFYSGLSKRRGSSRSLTVKSLIGSRGPSKRSLNISLTCQNMNVRLLVPKQGVLPKIKCN 602

Query: 142 AGPIDWPKGCASAGLICGLLVCYSSSK-AHAEAADEKEDGEEDYDLSNVKYSHGKKVYTD 200
            G + WP+GCASAGL+  LLVCYSSS+  HAE+A +KED + +   +    SHGKKVYTD
Sbjct: 603 VGSVSWPQGCASAGLMFALLVCYSSSEPVHAESAQKKEDKKGECYTN----SHGKKVYTD 658

Query: 201 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWF 260
           YS+ GIPGDGRCLFR+V HGACLR+GKPAPS S QRELAD+LRA+V DEFI+RR ETEWF
Sbjct: 659 YSITGIPGDGRCLFRSVVHGACLRSGKPAPSASCQRELADELRAEVVDEFIRRRSETEWF 718

Query: 261 IEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKE 320
           IEGDFD YVSQ+RKPHVWGGEPEL MASHVL+MPITVYM+DKD+GGLI+IAEYGQEYGKE
Sbjct: 719 IEGDFDTYVSQMRKPHVWGGEPELFMASHVLQMPITVYMYDKDSGGLIAIAEYGQEYGKE 778

Query: 321 KPIRVLYHGFGHYDALQNLGHEGGISKL 348
            PIRVLYHGFGHY++LQ  G +G  S+L
Sbjct: 779 NPIRVLYHGFGHYESLQIPGKKGAKSRL 806

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806736|ref|NP_001242273.1| uncharacterized protein LOC100810338 [Glycine max] gi|255645865|gb|ACU23423.1| unknown [Glycine max]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/334 (60%), Positives = 240/334 (71%), Gaps = 10/334 (2%)

Query: 8   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 67
           M +  S    + N V L GR    M  NI G+  +G S+S    L  G+S+ ++ G+S  
Sbjct: 1   MSICFSTSQSSINAVVLKGRTPLLMSSNIHGLWSQGISTSISSSLSPGKSEISHVGLSVC 60

Query: 68  ISSSSLNVL-QPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMR 126
              S   V+ Q  +        +K R N R      F  S   +KR+ EISLAC+++ MR
Sbjct: 61  TKLSCSTVMGQTIRGGFLGSCCSKQRGNPR------FFSSVVPRKRYHEISLACQTINMR 114

Query: 127 LLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVC-YSSSKAHAEAADEKEDGEEDYD 185
           LLVP Q ++ K+K N G + WP+GCAS GLI GLLVC  SS  AHAE+  E E+ ++D +
Sbjct: 115 LLVPKQNMMRKVKCNLGSVSWPRGCASVGLIFGLLVCNLSSEPAHAESHSENENRKDDCN 174

Query: 186 L--SNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLR 243
              SNVK  HGKKVYTDYSVIGIPGDGRCLFR+VA GACLR+GKP P+ SIQRELADDLR
Sbjct: 175 EYESNVKVLHGKKVYTDYSVIGIPGDGRCLFRSVARGACLRSGKPPPNESIQRELADDLR 234

Query: 244 AKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKD 303
           A+VADEFIKR+EETEWF+EGDFD YVSQIRKPHVWGGE EL +ASHVL+MPITVYM+DKD
Sbjct: 235 ARVADEFIKRKEETEWFVEGDFDTYVSQIRKPHVWGGESELFIASHVLQMPITVYMYDKD 294

Query: 304 AGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQ 337
           AGGLISIAEYGQ+YGKE PIRVLYHGFGHYDAL+
Sbjct: 295 AGGLISIAEYGQKYGKENPIRVLYHGFGHYDALE 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437605|ref|XP_004136582.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus] gi|449522883|ref|XP_004168455.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus]

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 186/339 (54%), Positives = 216/339 (63%), Gaps = 60/339 (17%)

Query: 13  SICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGIS-RTISSS 71
           SI  C +N V L    + QMG NIC V  R  S+SCC Y   G S+  YA  S  TISS 
Sbjct: 5   SISICTRNAVPLN--LRTQMGSNICTVLSRRTSTSCCSY---GISRPKYADQSVTTISSC 59

Query: 72  SLNVLQPFQAT-CFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVP 130
           S N  Q FQA  C S   ++   + +  T++  I   GS+ R +EISLAC+         
Sbjct: 60  SPNTSQRFQAGGCLSTCFSRRSIDFQAFTVKDLITDGGSRGRDVEISLACK--------- 110

Query: 131 SQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGEEDYDLSNVK 190
                                                      A EK+D EE+ D S+VK
Sbjct: 111 -------------------------------------------AYEKDDNEENSDSSHVK 127

Query: 191 YSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEF 250
            SHGKKVYTDYSVIGIPGDGRCLFR+VAHGACLR+GKPAPS S+QR+LAD+LR+ VADEF
Sbjct: 128 LSHGKKVYTDYSVIGIPGDGRCLFRSVAHGACLRSGKPAPSESLQRDLADELRSNVADEF 187

Query: 251 IKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISI 310
           IKRREETEWF+EGDFD Y+S +R PHVWGGEPEL MASHVL+ PI VYM+DKD+GGLISI
Sbjct: 188 IKRREETEWFVEGDFDTYMSNMRNPHVWGGEPELFMASHVLQAPIIVYMYDKDSGGLISI 247

Query: 311 AEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEG-GISKL 348
           AEYG EYGKE PIRVLYHGFGHYDALQ   ++G G SKL
Sbjct: 248 AEYGDEYGKENPIRVLYHGFGHYDALQIPANQGVGRSKL 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120200|ref|XP_002330989.1| predicted protein [Populus trichocarpa] gi|222872919|gb|EEF10050.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/216 (70%), Positives = 180/216 (83%), Gaps = 1/216 (0%)

Query: 123 MKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK-AHAEAADEKEDGE 181
           M +R  V  +G+L K+K N G +   +   + G+  GLLVCYSSS+  HAE+A  K   E
Sbjct: 1   MALRFSVSKRGLLAKIKGNVGSVSCSQRHTTTGIFFGLLVCYSSSEPTHAESATRKNKEE 60

Query: 182 EDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADD 241
           +  + S++K+SHGK+VYTDYS+IG+PGDGRCLFR+VAHGACLR GK APS S+QRELADD
Sbjct: 61  DICNSSDIKFSHGKEVYTDYSIIGVPGDGRCLFRSVAHGACLRFGKRAPSESLQRELADD 120

Query: 242 LRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHD 301
           LR+ VADEFIKRRE+TEWFIEG+FD YVSQ+RKPHVWGGEPELLMASHVL+MPITVYMHD
Sbjct: 121 LRSNVADEFIKRREDTEWFIEGNFDTYVSQMRKPHVWGGEPELLMASHVLKMPITVYMHD 180

Query: 302 KDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQ 337
           K+A GLISIAEYGQEYG E PIRV+Y+GFGHYDALQ
Sbjct: 181 KNARGLISIAEYGQEYGVENPIRVIYNGFGHYDALQ 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817112|ref|XP_002876439.1| hypothetical protein ARALYDRAFT_486235 [Arabidopsis lyrata subsp. lyrata] gi|297322277|gb|EFH52698.1| hypothetical protein ARALYDRAFT_486235 [Arabidopsis lyrata subsp. lyrata]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 170/343 (49%), Positives = 218/343 (63%), Gaps = 41/343 (11%)

Query: 8   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 67
           MI  + I  C++N +N+    +G +G ++ GV  +G     C  L  G S+++Y G   +
Sbjct: 2   MICYSPITTCSRNAINI----KGHLGTHLYGVVAQGSYKFSCHSLLLGLSRRHYTGFRVS 57

Query: 68  ISSSSLNVLQPFQATCFSPGLTKPRC--NLRPLTIRSFIGSRGSQKRHIEISLACRSMKM 125
           +S+                   +P    + R L  RS +G     K  +E+S      KM
Sbjct: 58  VSN-------------------RPSSWHDKRLLINRSTVGP----KEKLEVSFLSPDAKM 94

Query: 126 RLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK--AHAEAADEKEDGEED 183
           +          K++ N   + W    A  G+I  LLVCYSS+   A+A+A+ +K+     
Sbjct: 95  KC--------SKIESNMRNLYWYSRFAYTGVIVSLLVCYSSTSQSAYADASRDKDANNVH 146

Query: 184 YDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLR 243
              S+ K+ +GK+VYTDYS+IGIPGDGRCLFR+VAHG CLR+GK AP   +QRELAD+LR
Sbjct: 147 NHSSHGKFHNGKRVYTDYSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELR 206

Query: 244 AKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKD 303
            KVADEFIKRR+ETEWF+EGDFD YV QIR+PHVWGGEPEL +ASHVL+MPITVYM D+ 
Sbjct: 207 TKVADEFIKRRQETEWFVEGDFDSYVRQIREPHVWGGEPELFIASHVLQMPITVYMKDEK 266

Query: 304 AGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGIS 346
           AGGLISIAEYGQEYGK+ PIRVLYHGFGHYDAL  L HE   S
Sbjct: 267 AGGLISIAEYGQEYGKDDPIRVLYHGFGHYDAL--LIHESKAS 307

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694718|ref|NP_850716.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|145332883|ref|NP_001078307.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|75155093|sp|Q8LBZ4.1|OTU_ARATH RecName: Full=OTU domain-containing protein At3g57810 gi|21555880|gb|AAM63953.1| unknown [Arabidopsis thaliana] gi|109946583|gb|ABG48470.1| At3g57810 [Arabidopsis thaliana] gi|332646184|gb|AEE79705.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|332646185|gb|AEE79706.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|407078834|gb|AFS88948.1| deubiquitinating enzyme OTU4 isoform ia [Arabidopsis thaliana]

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 165/341 (48%), Positives = 215/341 (63%), Gaps = 33/341 (9%)

Query: 8   MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 67
           MI  + I  C++N +++    +  +G  + GV   G S   C+ L SG S+++Y G   +
Sbjct: 2   MICYSPITTCSRNAISI----KRHLGSRLYGVVAHGSSKFSCYSLLSGLSRRHYTGFRVS 57

Query: 68  ISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRL 127
           +S+      +P  ++    GL       RP           + K  +E+S       M+ 
Sbjct: 58  VSN------RP--SSWHDKGLFGSVLINRPTV---------APKEKLEVSFLSPEANMKC 100

Query: 128 LVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK--AHAEAADEKEDGEEDYD 185
                    K++ N   +      A  G+I  LLVCYSS+   A+A+++ +K+     + 
Sbjct: 101 --------SKIESNMRNLYCYSRFAYTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHH 152

Query: 186 LSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAK 245
            S+ K+ +GK+VYTDYS+IGIPGDGRCLFR+VAHG CLR+GK AP   +QRELAD+LR +
Sbjct: 153 SSDGKFHNGKRVYTDYSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTR 212

Query: 246 VADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAG 305
           VADEFI+RR+ETEWF+EGDFD YV QIR PHVWGGEPEL MASHVL+MPITVYM D  AG
Sbjct: 213 VADEFIQRRQETEWFVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAG 272

Query: 306 GLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGIS 346
           GLISIAEYGQEYGK+ PIRVLYHGFGHYDAL  L HE   S
Sbjct: 273 GLISIAEYGQEYGKDDPIRVLYHGFGHYDAL--LLHESKAS 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739716|emb|CBI29898.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 143/193 (74%), Positives = 165/193 (85%), Gaps = 5/193 (2%)

Query: 157 ICGLLVCYSSSK-AHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFR 215
           +  LLVCYSSS+  HAE+A +KED + +   +    SHGKKVYTDYS+ GIPGDGRCLFR
Sbjct: 1   MFALLVCYSSSEPVHAESAQKKEDKKGECYTN----SHGKKVYTDYSITGIPGDGRCLFR 56

Query: 216 AVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKP 275
           +V HGACLR+GKPAPS S QRELAD+LRA+V DEFI+RR ETEWFIEGDFD YVSQ+RKP
Sbjct: 57  SVVHGACLRSGKPAPSASCQRELADELRAEVVDEFIRRRSETEWFIEGDFDTYVSQMRKP 116

Query: 276 HVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDA 335
           HVWGGEPEL MASHVL+MPITVYM+DKD+GGLI+IAEYGQEYGKE PIRVLYHGFGHY++
Sbjct: 117 HVWGGEPELFMASHVLQMPITVYMYDKDSGGLIAIAEYGQEYGKENPIRVLYHGFGHYES 176

Query: 336 LQNLGHEGGISKL 348
           LQ  G +G  S+L
Sbjct: 177 LQIPGKKGAKSRL 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2095748	317	AT3G57810 "AT3G57810" [Arabido	0.554	0.608	0.675	1.1e-74
TAIR|locus:504955906	234	AT2G38025 "AT2G38025" [Arabido	0.431	0.641	0.344	7e-15
ZFIN|ZDB-GENE-040426-974	293	otud6b "OTU domain containing	0.362	0.430	0.304	2.7e-07
MGI|MGI:1919451	294	Otud6b "OTU domain containing	0.359	0.425	0.288	2.5e-05
CGD|CAL0002605	323	orf19.1959 [Candida albicans (	0.367	0.396	0.283	0.00015
MGI|MGI:3644685	290	Otud6a "OTU domain containing	0.373	0.448	0.298	0.0002
UNIPROTKB|Q96G74	571	OTUD5 "OTU domain-containing p	0.341	0.208	0.259	0.00029
TAIR|locus:2099172	332	AT3G62940 [Arabidopsis thalian	0.370	0.388	0.295	0.00034
DICTYBASE|DDB_G0285907	537	DDB_G0285907 "OTU domain conta	0.333	0.216	0.305	0.00034
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.344	0.273	0.270	0.00042

TAIR|locus:2095748 AT3G57810 "AT3G57810" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
 Identities = 133/197 (67%), Positives = 150/197 (76%)

Query:   152 ASAGLICGLLVCYSSSKXXXXXXXXXXXXXXXXX--LSNVKYSHGKKVYTDYSVIGIPGD 209
             A  G+I  LLVCYSS+                     S+ K+ +GK+VYTDYS+IGIPGD
Sbjct:   117 AYTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGKRVYTDYSIIGIPGD 176

Query:   210 GRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYV 269
             GRCLFR+VAHG CLR+GK AP   +QRELAD+LR +VADEFI+RR+ETEWF+EGDFD YV
Sbjct:   177 GRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWFVEGDFDTYV 236

Query:   270 SQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHG 329
              QIR PHVWGGEPEL MASHVL+MPITVYM D  AGGLISIAEYGQEYGK+ PIRVLYHG
Sbjct:   237 RQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKDDPIRVLYHG 296

Query:   330 FGHYDALQNLGHEGGIS 346
             FGHYDAL  L HE   S
Sbjct:   297 FGHYDAL--LLHESKAS 311

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:504955906 AT2G38025 "AT2G38025" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 60/174 (34%), Positives = 84/174 (48%)

Query:   187 SNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKV 246
             S++  S   K    Y+V  + GDGRCLFRA+  G     G    +   +R+ AD+LR  V
Sbjct:    62 SSMNRSPAAKKVEKYAVDRVKGDGRCLFRALVKGMAFNKGITL-NPQRERDDADELRMAV 120

Query:   247 ADEFIKRREETEWFIEG------DFDL--YVSQIRKPHVWGGEPELLMASHVLRMPITVY 298
              +      +E E + E       D  L  +  +I +   WGGE ELL+ S + + PI VY
Sbjct:   121 KEVICNDPKEREKYKEALVAITVDESLKRFCQRIGRHDFWGGESELLVLSKLCKQPIIVY 180

Query:   299 M----HDKDAG---GLISIAEYGQEY----GKEKP----IRVLYHGFGHYDALQ 337
             +    H +  G   G I I EYG E+    GK K     +R+LY G  HYD L+
Sbjct:   181 IPEHEHGRGGGYGPGFIPIQEYGSEFRGGWGKGKTNKNVVRLLYSGRNHYDLLR 234

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 43/141 (30%), Positives = 68/141 (48%)

Query:   206 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD--EFIKRREETEWFIEG 263
             I  DG C++RAV H    R G       ++ + A  +R+   D   F+      + +   
Sbjct:   152 ISSDGHCMYRAVEHQLTER-GLALGLKELRDQTAQYMRSHADDFMPFLTNPNTGDMYTAE 210

Query:   264 DFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPI 323
             +F+ Y S +     WGG+ EL   S VL++PI V   D      I+I   G+EY K K I
Sbjct:   211 EFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQADSPC---ITI---GEEYDKPK-I 263

Query:   324 RVLY--HGFG---HYDALQNL 339
              ++Y  H +G   HY++++ L
Sbjct:   264 TLIYMRHAYGLGEHYNSVEPL 284

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1919451 Otud6b "OTU domain containing 6B" [Mus musculus (taxid:10090)]

 Score = 125 (49.1 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 41/142 (28%), Positives = 69/142 (48%)

Query:   206 IPGDGRCLFRAVAHGACLRAGKPAPSV-SIQRELADDLRAKVAD--EFIKRREETEWFIE 262
             IP DG C++ A+     LR    A +V S++R+ A+ ++    D   F+      + +  
Sbjct:   153 IPSDGHCMYGALEDQ--LREQDCALTVASLRRQTAEYMQTHSDDFLPFLTNPSTGDMYTP 210

Query:   263 GDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKP 322
              +F  Y   I     WGG+ EL   SH+L+ PI +     DA  +I     G+EY +  P
Sbjct:   211 EEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQ--ADAPPII----VGEEYPRN-P 263

Query:   323 IRVLY--HGFG---HYDALQNL 339
             + ++Y  H +G   HY+++  L
Sbjct:   264 LVLVYMRHAYGLGEHYNSVTRL 285

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0002605 orf19.1959 [Candida albicans (taxid:5476)]

 Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 42/148 (28%), Positives = 68/148 (45%)

Query:   206 IPGDGRCLFRAVAHGACLR----------AGKPAPSVSIQRELADDLRAKVADEFIKRRE 255
             I  DG CLF ++     +R            +  PS+   R+LA D      ++FI    
Sbjct:   182 IKPDGHCLFASIQDQLKVRHQDVEHLDHNGPEDVPSIDQLRKLAGDYIKSNQEDFIPFLI 241

Query:   256 ETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGG-LISIAEYG 314
             +       D D Y++++    +WG + E+L  S V   PI++YM    AG   ++I E+G
Sbjct:   242 DENTGELRDLDDYINELTTTAMWGSDMEILALSKVFNCPISIYM----AGASTLTINEHG 297

Query:   315 QEYGKEKPIRVLYHGFG---HYDALQNL 339
             Q    E  +    H FG   HY++L++L
Sbjct:   298 QL--PELKLGYYKHSFGLGEHYNSLRDL 323

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

MGI|MGI:3644685 Otud6a "OTU domain containing 6A" [Mus musculus (taxid:10090)]

 Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
 Identities = 45/151 (29%), Positives = 69/151 (45%)

Query:   206 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD--EFIKRREETEWFIEG 263
             IP DG C++RA+               S++   A  +R  + D   F    E   ++   
Sbjct:   147 IPADGHCMYRAIQDQLVFSV----TIESLRYRTAYYMRKHIDDFLPFFTEPEAGNFYTRE 202

Query:   264 DFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPI 323
             DF  Y   I     WGG+ EL   SHVL+ PI V   +      I I   G+EY + KP+
Sbjct:   203 DFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQANSPT---IVI---GEEYTR-KPV 255

Query:   324 RVLY-H---GFG-HYDALQNL---GHEGGIS 346
              ++Y H    FG HY++++ +   G  GG++
Sbjct:   256 TLVYLHYACDFGEHYNSVKPIEVAGAFGGMA 286

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q96G74 OTUD5 "OTU domain-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
 Identities = 34/131 (25%), Positives = 60/131 (45%)

Query:   209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 268
             DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct:   221 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 269

Query:   269 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 327
             +++ RK +  G   E+   + +   P+ VY +      +  I  + G    +++PIRV Y
Sbjct:   270 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSY 329

Query:   328 HGFGHYDALQN 338
             H   HY+++ N
Sbjct:   330 HRNIHYNSVVN 340

GO:0006508 "proteolysis" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IDA

GO:0070536 "protein K63-linked deubiquitination" evidence=IDA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0032496 "response to lipopolysaccharide" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

TAIR|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
 Identities = 44/149 (29%), Positives = 66/149 (44%)

Query:   202 SVIGIPGDGRCLFRAVAHGACLRAGKPAP-SVSIQRELADDLRAKVADEFIKR-REETEW 259
             +V  I  DG CL+RAV +    R+G  +P +    RE+A     +   +F+     ETE 
Sbjct:   182 TVSEIKPDGHCLYRAVENQLANRSGGASPYTYQNLREMAASYMREHKTDFLPFFLSETEG 241

Query:   260 -----FIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 314
                    E  F+ Y  ++     WG + EL   +H LR  I VY       G     E G
Sbjct:   242 DSNSGSAEERFEKYCREVESTAAWGSQLELGALTHCLRKHIKVY------SGSFPDVEMG 295

Query:   315 QEY--GKEKPIRVLYH--GFG---HYDAL 336
             +EY  G +  + + YH   FG   HY+++
Sbjct:   296 KEYRSGDDSSLMLSYHRHAFGLGEHYNSV 324

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

DICTYBASE|DDB_G0285907 DDB_G0285907 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
 Identities = 41/134 (30%), Positives = 62/134 (46%)

Query:   209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 268
             DG CLFR+VA             +   +E+ + +R K  D     R+    FI  DF  Y
Sbjct:   229 DGNCLFRSVAD-----------QIYGDQEMHNTVREKCMDYMEAERDHFSQFITEDFADY 277

Query:   269 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY- 327
             +++ R   V+G   E+   + +   PI VY    D    I+I  +G  Y    PIR+ Y 
Sbjct:   278 IARKRTDKVFGNNTEMQAMAELFNRPIEVYSKTIDP---INIF-HGS-YKGNYPIRLSYL 332

Query:   328 HGFGHYDALQNLGH 341
             HG  HYD++ +L +
Sbjct:   333 HG-NHYDSIYDLNN 345

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 117 (46.2 bits), Expect = 0.00042, P = 0.00042
 Identities = 36/133 (27%), Positives = 64/133 (48%)

Query:   206 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQ-RELADDLRAKVADEFIKRREETEWFIEGD 264
             + GDG CLFR++A        + AP+   + RE       K  D F    ++ E+     
Sbjct:    69 VAGDGNCLFRSIADQL-----QDAPNEHRKYREAICKYIEKNKDMFAPFIDDEEF---ES 120

Query:   265 FDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIR 324
             F+ Y+ ++R+   WGG  E+  AS    + IT++  D+    +++   +  E  K K I 
Sbjct:   121 FEEYIQEMREDATWGGHVEIQAASLAYNVNITIHQMDQPRWEIVN--HFPPE--KNKTIH 176

Query:   325 VLYHGFGHYDALQ 337
             + YH   HY++++
Sbjct:   177 LSYHNDEHYNSVR 189

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBZ4	OTU_ARATH	No assigned EC number	0.4838	0.8850	0.9716	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	9e-26
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	2e-05

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 99.5 bits (248), Expect = 9e-26
 Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 14/132 (10%)

Query: 207 PGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFD 266
           PGDG CLF AV+              + ++EL D+LR  V +   + RE+ E F+E D +
Sbjct: 1   PGDGNCLFHAVSDQLGD---------AGRQELHDELREAVVEYLRENREDFEKFLEEDEN 51

Query: 267 LYVSQIRKPHVWGGEPELLMASHVLRMPITVYM-HDKDAGGLISIAEYGQEYGKEKPIRV 325
            Y   I K   WGG  E+   +H+LR+PI VY          I I        K+  IR+
Sbjct: 52  EYYKWISKDGAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRL 111

Query: 326 LYHGF----GHY 333
            Y G      HY
Sbjct: 112 SYLGLEYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 4/134 (2%)

Query: 206 IPGDGRCLFRAVAHGACLR-AGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGD 264
             GDG      ++    +R         S  R  +     +++  F     + E      
Sbjct: 176 SQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVL 235

Query: 265 FDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIR 324
           +D YV+++      G   E+   + +L+ P         A   I     G  +  EK   
Sbjct: 236 WDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTN---TASPSIKCNICGTGFVGEKDYY 292

Query: 325 VLYHGFGHYDALQN 338
                 GHY+  ++
Sbjct: 293 AHALATGHYNFGED 306

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.97
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.9
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.74
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.45
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.37
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.14
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.86
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.65
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	93.11

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.7e-34  Score=273.54  Aligned_cols=292  Identities=27%  Similarity=0.313  Sum_probs=203.4

Q ss_pred             eEEeeeccccccceEEecccccccccceeeeeeecCCCceeeeecccCcccccccceeEEeecCCccccccccccccccc
Q 018971            8 MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPG   87 (348)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   87 (348)
                      |++..++..|.+|...|.    +|-+.+-......+..+..|.+.. ++.|+.|.+....++.   -+-|++++.+++..
T Consensus         2 ~~~~~~~~~~~~~e~iLa----RHr~E~keLq~ki~~mKk~a~k~~-k~~rK~~~~~~~~le~---el~qkH~kEL~~~~   73 (302)
T KOG2606|consen    2 MTCMDSEQDEESNEEILA----RHRRERKELQAKITSMKKAAPKGN-KKKRKELTEDIAKLEK---ELSQKHKKELEKLK   73 (302)
T ss_pred             cCCccchhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHHh---HHHHHHHHHHHhhc
Confidence            677889999999999998    999999999999999999998887 8999999985555544   24579999999999


Q ss_pred             ccccCCCCCCcceeeeeecccccceeeeeeecccceeeeecccCCCcccccccCcccccCCCCCCcccceeeeeeecCcc
Q 018971           88 LTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSS  167 (348)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (348)
                      +...              +...++....-|+..+..+|.++-  .+-.+. ..+.+.-|-..+-.-.....-..++.++.
T Consensus        74 ~~~~--------------~e~~~~e~~~~s~l~~~a~~~~~~--~ee~P~-~sKa~k~r~k~r~e~r~~e~~~~~e~~~~  136 (302)
T KOG2606|consen   74 LINE--------------SEVTPKENLIESVLSPIANMSLEN--KEETPR-QSKARKRREKKRKEERKREAEKIAEEESL  136 (302)
T ss_pred             ccCc--------------cccCccccchhhhhcccccccccc--cccCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9887              456677778888888888876432  110000 01111111111111111111122222221


Q ss_pred             hhhhhhcccccCCCCccccccccccccccccCCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHH
Q 018971          168 KAHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVA  247 (348)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vv  247 (348)
                      .   -.+..+       ..+..+ .....-.++|.+++||+||+|||+||+|||..+++...+.+.||++.+++||.++.
T Consensus       137 ~---~~~~~k-------~~E~~k-~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~  205 (302)
T KOG2606|consen  137 S---NQADAK-------SMEKEK-LAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVE  205 (302)
T ss_pred             h---cCCchh-------hhHHHH-HHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            0   001110       011111 12233346899999999999999999999999877767767777667777777665


Q ss_pred             HHHhcChhhhhhcccc--CHHHHHHHhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEE
Q 018971          248 DEFIKRREETEWFIEG--DFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRV  325 (348)
Q Consensus       248 dy~~~n~e~fe~fie~--dfd~Y~~~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~L  325 (348)
                      |++--..+..++++.+  +|++||++|++++.|||++||.|+|++|++||.||+.+.      .+.+||++|++++||.|
T Consensus       206 df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~------p~~~~geey~kd~pL~l  279 (302)
T KOG2606|consen  206 DFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADG------PILEYGEEYGKDKPLIL  279 (302)
T ss_pred             HhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCC------CceeechhhCCCCCeee
Confidence            5442223334444433  799999999999999999999999999999999999752      25789999987899999


Q ss_pred             EEc----CCC-cceeeecCCC
Q 018971          326 LYH----GFG-HYDALQNLGH  341 (348)
Q Consensus       326 sYh----g~g-HYDSL~~~~~  341 (348)
                      +||    +.| ||||+.+..+
T Consensus       280 vY~rH~y~LGeHYNS~~~~~n  300 (302)
T KOG2606|consen  280 VYHRHAYGLGEHYNSVTPLKN  300 (302)
T ss_pred             ehHHhHHHHHhhhcccccccc
Confidence            996    344 9999987654

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.90  E-value=5.5e-24  Score=176.08  Aligned_cols=112  Identities=39%  Similarity=0.689  Sum_probs=88.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHh-cChhhhhhccccCHHHHHHHhhCCCCcCCHHHHH
Q 018971          207 PGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFI-KRREETEWFIEGDFDLYVSQIRKPHVWGGEPELL  285 (348)
Q Consensus       207 pGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~-~n~e~fe~fie~dfd~Y~~~M~k~gtWGG~iEL~  285 (348)
                      ||||||||||||+||+...+.       .+..|.+||+.+++||+ .+++.|++|++++      +|+++++|||++||+
T Consensus         1 pgDGnClF~Avs~~l~~~~~~-------~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~   67 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGG-------SEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQ   67 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SS-------STTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHH
T ss_pred             CCCccHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHH
Confidence            799999999999999954311       13578999999999999 9999999998766      999999999999999


Q ss_pred             HHHHhcCCCEEEEeecCCCCCceEEEEcCC---CCCCCCeEEEEEcC-----CCcc
Q 018971          286 MASHVLRMPITVYMHDKDAGGLISIAEYGQ---EYGKEKPIRVLYHG-----FGHY  333 (348)
Q Consensus       286 ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~---e~~~~~pI~LsYhg-----~gHY  333 (348)
                      |+|++|+++|+||+...  +......++..   .....++|.|.|++     .+||
T Consensus        68 a~a~~~~~~I~v~~~~~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   68 ALANVLNRPIIVYSSSD--GDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             HHHHHHTSEEEEECETT--TBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             HHHHHhCCeEEEEEcCC--CCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            99999999999998732  22222333322   22356899999997     7798

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3e-18  Score=162.29  Aligned_cols=126  Identities=25%  Similarity=0.384  Sum_probs=109.4

Q ss_pred             CcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhh-hhccccCHHHHHHHhhCCCCc
Q 018971          200 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDLYVSQIRKPHVW  278 (348)
Q Consensus       200 gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~f-e~fie~dfd~Y~~~M~k~gtW  278 (348)
                      -+.++.||.|+.|||+||+..+....+.          -..+||+.++.....|++.| +++++..-.+||+||+++..|
T Consensus       109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~----------~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsW  178 (307)
T KOG3288|consen  109 VLSRRVVPDDNSCLFTAIAYVIFKQVSN----------RPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSW  178 (307)
T ss_pred             eeEEEeccCCcchhhhhhhhhhcCccCC----------CcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHcccccc
Confidence            4788999999999999999988743221          12689999999999999987 688999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCC
Q 018971          279 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH  341 (348)
Q Consensus       279 GG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~~~~~  341 (348)
                      ||.+||..||+.|++.|.|+..+  +   ..|..||++.+....+.|.|.|. |||+|.+...
T Consensus       179 GGaIElsILS~~ygveI~vvDiq--t---~rid~fged~~~~~rv~llydGI-HYD~l~m~~~  235 (307)
T KOG3288|consen  179 GGAIELSILSDYYGVEICVVDIQ--T---VRIDRFGEDKNFDNRVLLLYDGI-HYDPLAMNEF  235 (307)
T ss_pred             CceEEeeeehhhhceeEEEEecc--e---eeehhcCCCCCCCceEEEEeccc-ccChhhhccC
Confidence            99999999999999999999764  2   35789998876788999999998 9999988654

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.45  E-value=8.9e-13  Score=123.22  Aligned_cols=98  Identities=22%  Similarity=0.334  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhcChhhhhhccc----cCHHHHH-HHhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCC-CCCceEEEE
Q 018971          239 ADDLRAKVADEFIKRREETEWFIE----GDFDLYV-SQIRKPHVWGGEPELLMASHVLRMPITVYMHDKD-AGGLISIAE  312 (348)
Q Consensus       239 h~eLR~~vvdy~~~n~e~fe~fie----~dfd~Y~-~~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~-s~g~i~I~~  312 (348)
                      ...+|-.+..||..|.++|++|++    .++++|| +.+...+.-.+++.+.|||++|+++|.|+..|+. ++..+....
T Consensus       139 V~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~  218 (244)
T PF10275_consen  139 VIFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHE  218 (244)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEE
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCcccccc
Confidence            346777778888888899999997    5699999 5777789999999999999999999999999975 444455566


Q ss_pred             cCCCC-CCCCeEEEEEcCCCcceeee
Q 018971          313 YGQEY-GKEKPIRVLYHGFGHYDALQ  337 (348)
Q Consensus       313 ~G~e~-~~~~pI~LsYhg~gHYDSL~  337 (348)
                      +.++. +..+.|.|+|.. ||||.|.
T Consensus       219 ~~~~~~~~~~~i~LLyrp-gHYdIly  243 (244)
T PF10275_consen  219 FPPDNESQEPQITLLYRP-GHYDILY  243 (244)
T ss_dssp             ES-SSTTSS-SEEEEEET-BEEEEEE
T ss_pred             CCCccCCCCCEEEEEEcC-Ccccccc
Confidence            64322 246789999997 4999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.7e-13  Score=135.13  Aligned_cols=128  Identities=22%  Similarity=0.263  Sum_probs=96.9

Q ss_pred             ccCCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhhCCC
Q 018971          197 VYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPH  276 (348)
Q Consensus       197 ~~~gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fie~dfd~Y~~~M~k~g  276 (348)
                      ...||.++.|..||||+|||+|+|++.+           ++.|++.|++++|++..+++.|+-|+.++|.+|+.++++++
T Consensus       214 ~~~g~e~~Kv~edGsC~fra~aDQvy~d-----------~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~  282 (371)
T KOG2605|consen  214 KHFGFEYKKVVEDGSCLFRALADQVYGD-----------DEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADG  282 (371)
T ss_pred             HHhhhhhhhcccCCchhhhccHHHhhcC-----------HHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCC
Confidence            3358999999999999999999999953           57899999999999999999999999999999999999999


Q ss_pred             CcCCHHHHHHHHH---hcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecC
Q 018971          277 VWGGEPELLMASH---VLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNL  339 (348)
Q Consensus       277 tWGG~iEL~ALA~---ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~~~  339 (348)
                      .||+++|+||+|.   ....++.+.+....  -.+.+.+-.++  ....+++.|.-.-||+..+..
T Consensus       283 ~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t--~~~~~~~~~~~--~~~~~~~n~~~~~h~~~~~~~  344 (371)
T KOG2605|consen  283 EPGNHIEQQAAADIYEEIEKPLNITSFKDT--CYIQTPPAIEE--SVKMEKYNFWVEVHYNTARHS  344 (371)
T ss_pred             CCcchHHHhhhhhhhhhccccceeeccccc--ceeccCccccc--chhhhhhcccchhhhhhcccc
Confidence            9999999999995   55666666665321  11111111111  122233444333399988764

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=2.2e-10  Score=107.75  Aligned_cols=99  Identities=19%  Similarity=0.239  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHHHhhC-CCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEc
Q 018971          237 ELADDLRAKVADEFIKRREETEWFIEG--DFDLYVSQIRK-PHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY  313 (348)
Q Consensus       237 ~~h~eLR~~vvdy~~~n~e~fe~fie~--dfd~Y~~~M~k-~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~  313 (348)
                      ....+||-.+..+++.+.|.|+||+++  ++++||++--. ...=.||++|.||++++++.|+|-..|+.+++...-+.|
T Consensus       154 yiV~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~f  233 (256)
T KOG3991|consen  154 YIVMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDF  233 (256)
T ss_pred             HHHHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcC
Confidence            345678888888888999999999976  79999986433 366799999999999999999999999876543322333


Q ss_pred             CCCCCCCCeEEEEEcCCCcceeeec
Q 018971          314 GQEYGKEKPIRVLYHGFGHYDALQN  338 (348)
Q Consensus       314 G~e~~~~~pI~LsYhg~gHYDSL~~  338 (348)
                      -+  +..+.|.|+|.- ||||.|..
T Consensus       234 pe--~s~P~I~LLYrp-GHYdilY~  255 (256)
T KOG3991|consen  234 PE--ASAPEIYLLYRP-GHYDILYK  255 (256)
T ss_pred             cc--ccCceEEEEecC-CccccccC
Confidence            22  346779999985 59999864

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=4.6e-10  Score=108.48  Aligned_cols=125  Identities=15%  Similarity=0.046  Sum_probs=83.8

Q ss_pred             CcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhcc-c------cCHHHHHHHh
Q 018971          200 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFI-E------GDFDLYVSQI  272 (348)
Q Consensus       200 gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fi-e------~dfd~Y~~~M  272 (348)
                      .+.--+++|||+|+|-+|++||..+.-    .-.+  +....+|-.-..|...+.+.|..+. +      .+|++|+.+|
T Consensus       170 ~i~k~d~~~dG~ieia~iS~~l~v~i~----~Vdv--~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~  243 (306)
T COG5539         170 WIVKPDSQGDGCIEIAIISDQLPVRIH----VVDV--DKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEV  243 (306)
T ss_pred             hhhccccCCCceEEEeEeccccceeee----eeec--chhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhh
Confidence            455568999999999999999975421    0111  1113344443444444455665553 1      3699999999


Q ss_pred             hCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEE--c--CCCcceeee
Q 018971          273 RKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY--H--GFGHYDALQ  337 (348)
Q Consensus       273 ~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsY--h--g~gHYDSL~  337 (348)
                      +.+..||+.+|+++||++|++|++++...    ++  +.+|+.= +.+...-+.|  |  +.||||+++
T Consensus       244 ~~~a~~g~~~ei~qLas~lk~~~~~~nT~----~~--~ik~n~c-~~~~~~e~~~~~Ha~a~GH~n~~~  305 (306)
T COG5539         244 LFDASDGITIEIQQLASLLKNPHYYTNTA----SP--SIKCNIC-GTGFVGEKDYYAHALATGHYNFGE  305 (306)
T ss_pred             cccccccchHHHHHHHHHhcCceEEeecC----Cc--eEEeecc-ccccchhhHHHHHHHhhcCccccC
Confidence            99999999999999999999999999854    22  2344422 1222344555  4  567999874

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=9.2e-09  Score=99.58  Aligned_cols=114  Identities=28%  Similarity=0.282  Sum_probs=94.8

Q ss_pred             EeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhcc-ccCHHHHHHHhhCCCCcC-CH
Q 018971          204 IGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFI-EGDFDLYVSQIRKPHVWG-GE  281 (348)
Q Consensus       204 ~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fi-e~dfd~Y~~~M~k~gtWG-G~  281 (348)
                      .+.-.|..|+|+|.+..++.             ....+||+.|.-+..+|+|.|.+.+ +-+.-+|++++.++..|| |+
T Consensus       115 ~p~~~d~srl~q~~~~~l~~-------------asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~  181 (306)
T COG5539         115 MPGQDDNSRLFQAERYSLRD-------------ASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGC  181 (306)
T ss_pred             CCCCCchHHHHHHHHhhhhh-------------hhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCce
Confidence            34446899999999988762             2578999999999999999997765 568999999999999999 99


Q ss_pred             HHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeee
Q 018971          282 PELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQ  337 (348)
Q Consensus       282 iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~  337 (348)
                      +|+.++++.|++.|+|...+.+     ....|++.. ....+.+.|.|. |||...
T Consensus       182 ieia~iS~~l~v~i~~Vdv~~~-----~~dr~~~~~-~~q~~~i~f~g~-hfD~~t  230 (306)
T COG5539         182 IEIAIISDQLPVRIHVVDVDKD-----SEDRYNSHP-YVQRISILFTGI-HFDEET  230 (306)
T ss_pred             EEEeEeccccceeeeeeecchh-----HHhhccCCh-hhhhhhhhhccc-ccchhh
Confidence            9999999999999999988744     245677553 346688999987 999876

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.11  E-value=0.37  Score=40.37  Aligned_cols=95  Identities=19%  Similarity=0.290  Sum_probs=57.3

Q ss_pred             eCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhhC--CCCcCCHHH
Q 018971          206 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRK--PHVWGGEPE  283 (348)
Q Consensus       206 IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fie~dfd~Y~~~M~k--~gtWGG~iE  283 (348)
                      +..|+|||--||+.+|...           -+..+.+.+       ++.        ...+.|+.++++  |.+|-+   
T Consensus         3 ~sR~NNCLVVAis~~L~~T-----------~e~l~~~M~-------An~--------~~i~~y~~W~r~~~~STW~D---   53 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGVT-----------LEKLDNLMQ-------ANV--------STIKKYHTWLRKKRPSTWDD---   53 (104)
T ss_pred             ccCCCCeEeehHHHHhcch-----------HHHHHHHHH-------hhH--------HHHHHHHHHHhcCCCCcHHH---
Confidence            5679999999999988621           011122222       121        245778877765  789944   


Q ss_pred             HHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEE----cCCCccee
Q 018971          284 LLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY----HGFGHYDA  335 (348)
Q Consensus       284 L~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsY----hg~gHYDS  335 (348)
                      ..++|+.+++.|+|--....  + ..+..+++..   ....++|    .+.|||-+
T Consensus        54 C~mFA~~LkVsm~vkV~~~~--~-~~l~~~~d~~---~s~v~~~~~~Ke~dGHF~a  103 (104)
T PF05415_consen   54 CRMFADALKVSMQVKVLSDK--P-YDLLYFVDGA---VSVVTLHLEGKESDGHFIA  103 (104)
T ss_pred             HHHHHHhheeEEEEEEcCCC--C-ceeeEeecCc---cceehhhhhccccCCceec
Confidence            57899999999988665422  1 2344455433   2334444    27789864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		9e-07
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		1e-05
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		6e-05

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 268
           DG CLFRAVA             V   +++ + +R    D  +K  +    ++  DF  Y
Sbjct: 54  DGACLFRAVA-----------DQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 102
Query: 269 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 327
           +++ RK +  G   E+   + +   P+ VY +      +  I  + G    +++PIRV Y
Sbjct: 103 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSY 162
Query: 328 HGFGHYDALQN 338
           H   HY+++ N
Sbjct: 163 HRNIHYNSVVN 173

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 268
           DG CLFRAVA             V   ++  + +R    D   K  +    ++  DF  Y
Sbjct: 54  DGACLFRAVA-----------DQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTY 102
Query: 269 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 327
           +++ RK +  G   E    +     P+ VY +      +  I  + G    +++PIRV Y
Sbjct: 103 INRKRKNNCHGNHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSY 162
Query: 328 HGFGHYDALQN 338
           H   HY+++ N
Sbjct: 163 HRNIHYNSVVN 173

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 268
           DG CLFRAVA     +         + R+   D   K AD F         ++  DF  Y
Sbjct: 67  DGACLFRAVAD----QVYGDQDXHEVVRKHCXDYLXKNADYFSN-------YVTEDFTTY 115
Query: 269 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 328
           +++ RK +  G   E    +     P+ VY +  +         +G    +++PIRV YH
Sbjct: 116 INRKRKNNCHGNHIEXQAXAEXYNRPVEVYQYSTEPINTF----HGIHQNEDEPIRVSYH 171
Query: 329 GFGHYDALQN 338
              HY+++ N
Sbjct: 172 RNIHYNSVVN 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	7e-38
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	5e-34
3pfy_A	185	OTU domain-containing protein 5; structural genomi	9e-31
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	7e-27
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	2e-08
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	1e-04

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  132 bits (334), Expect = 7e-38
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 9/147 (6%)

Query: 201 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWF 260
           + ++  PGDG C + ++A        K   S    + L +    K   E     E     
Sbjct: 31  FEIVRQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRLTESAARKYYQE-----EPEARL 83

Query: 261 IEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKE 320
           +    + Y+ ++   + WG   E  M +  + + I ++        + +  ++G      
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDVF- 141

Query: 321 KPIRVLYHGFGHYDALQNLGHEGGISK 347
             + +L+ G  H+DAL+ L      ++
Sbjct: 142 TAVNLLHSGQTHFDALRILPQFETDTR 168

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score =  124 bits (311), Expect = 5e-34
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 201 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWF 260
           + ++  PGDG C + ++A        K   S    + L        A ++ +  E     
Sbjct: 31  FEIVRQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRL----TESAARKYYQE-EPEARL 83

Query: 261 IEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKE 320
           +    + Y+ ++   + WG   E  M +  + + I ++     A   +       +    
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIW--TVAASDEVEAGIKFGDGDVF 141

Query: 321 KPIRVLYHGFGHYDALQNLGHEGGISK 347
             + +L+ G  H+DAL+ L      ++
Sbjct: 142 TAVNLLHSGQTHFDALRILPQFETDTR 168

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  114 bits (286), Expect = 9e-31
 Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 16/179 (8%)

Query: 164 YSSSKAHAEAADEKE-DGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGAC 222
           Y+S   +  AA   E       +     +    +    + +  +  DG CLFRAVA    
Sbjct: 21  YNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQ-- 78

Query: 223 LRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEP 282
                    V   +++ + +R    D  +K  +    ++  DF  Y+++ RK +  G   
Sbjct: 79  ---------VYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHI 129

Query: 283 ELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH 341
           E+   + +   P+ VY +  +         +G    +++PIRV YH   HY+++ N   
Sbjct: 130 EMQAMAEMYNRPVEVYQYSTEPINTF----HGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score =  104 bits (261), Expect = 7e-27
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 20/133 (15%)

Query: 206 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE-TEWFIEGD 264
           +  D  CLF A+A+   +           +++   DLR  V+ E +    +  +  ++  
Sbjct: 25  VLDDNSCLFHAIAY--GIF----------KQDSVRDLREMVSKEVLNNPVKFNDAILDKP 72

Query: 265 FDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIR 324
              Y   I K   WGG  E+ + S  L + I V   D      + I ++ ++      I 
Sbjct: 73  NKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDA-----VKIEKFNEDKFD-NYIL 126

Query: 325 VLYHGFGHYDALQ 337
           +L++G  HYD+L 
Sbjct: 127 ILFNG-IHYDSLT 138

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 242 LRAKVADEFIKRREETEWFIEGD--FDLYVSQ-IRKPHVWGGEPELLMASHVLRMPITVY 298
           LR   +    +  +  E FIEG      +  Q +           ++  +  L + I V 
Sbjct: 138 LRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVE 197

Query: 299 MHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDAL 336
             D+  GG  +   + +  G E  + +LY   GHYD L
Sbjct: 198 YMDRGEGGTTNPHIFPE--GSEPKVYLLYRP-GHYDIL 232

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens} Length = 454

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 40/160 (25%)

Query: 208 GDGRCLFRAVAHGACLRA-GKPAPSVSIQRELADDLRAKVADEFIKRR------------ 254
             G CL             G       +++ L D L       +   R            
Sbjct: 196 TAGDCLL----DSVLQATWGIYDKDSVLRKALHDSLHD--CSHWFYTRWKDWESWYSQSF 249

Query: 255 ------EETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVY---MHDKDAG 305
                  E +W  + D+   +S   +P     +  + + +H+LR PI VY    +    G
Sbjct: 250 GLHFSLREEQW--QEDWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRG 307

Query: 306 GLISIAEYG---------QEYGKEKPIRVLYHGFGHYDAL 336
             +    +          Q +  + PI + Y   GH+ AL
Sbjct: 308 ETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHFSAL 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.97
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.87
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.78
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.77
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.76
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.66
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.27
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	96.18

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=1.3e-35  Score=268.19  Aligned_cols=140  Identities=24%  Similarity=0.419  Sum_probs=102.6

Q ss_pred             ccccccccccccCCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhccccCHH
Q 018971          187 SNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFD  266 (348)
Q Consensus       187 ~~~~~~~g~~~~~gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fie~dfd  266 (348)
                      ....|...+....||.+++||+|||||||||++||+.+           ++.|.+||+.+++||++|+++|++|++++|+
T Consensus        45 ~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~-----------~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e  113 (185)
T 3pfy_A           45 QEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGD-----------QDMHEVVRKHCMDYLMKNADYFSNYVTEDFT  113 (185)
T ss_dssp             HHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSC-----------GGGHHHHHHHHHHHHHHTHHHHTTCC-----
T ss_pred             HHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            34457777777789999999999999999999999942           3568999999999999999999999999999


Q ss_pred             HHHHHhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCC
Q 018971          267 LYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH  341 (348)
Q Consensus       267 ~Y~~~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~~~~~  341 (348)
                      +||++|+++++|||++||+|||++|+++|.||+.+..   ++.+. .|.+....+||+|+||+.+|||||++|.+
T Consensus       114 ~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~---~i~i~-~g~~~~~~~~I~L~Y~~~~HYnSv~~p~~  184 (185)
T 3pfy_A          114 TYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTE---PINTF-HGIHQNEDEPIRVSYHRNIHYNSVVNPNK  184 (185)
T ss_dssp             ------------CCHHHHHHHHHHHTSCEEEESSCSS---CSEEE-CTTSCCTTSCEEEEEETTTEEEEEECC--
T ss_pred             HHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCC---CeEEe-cCccCCCCCEEEEEECCCCCcccccCCCC
Confidence            9999999999999999999999999999999997522   33332 25444457899999998889999998864

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.97  E-value=1.4e-32  Score=252.29  Aligned_cols=121  Identities=28%  Similarity=0.437  Sum_probs=106.8

Q ss_pred             CCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhh-hhccccCHHHHHHHhhCCCC
Q 018971          199 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDLYVSQIRKPHV  277 (348)
Q Consensus       199 ~gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~f-e~fie~dfd~Y~~~M~k~gt  277 (348)
                      .+|.+++||+||||||||||+|| ..           ++.|.+||+.+++||++|+++| +.|++++|++||++|+++++
T Consensus        18 ~~l~~~~i~~DGnCLFrAva~qL-~~-----------~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~   85 (212)
T 3by4_A           18 NVLSVHPVLDDNSCLFHAIAYGI-FK-----------QDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMES   85 (212)
T ss_dssp             SEEEEECCCCSTTHHHHHHHHHH-HS-----------SCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTS
T ss_pred             CCeEEEEeCCCCchHHHHHHHHh-CC-----------chHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCE
Confidence            46899999999999999999999 42           1347899999999999999999 47788999999999999999


Q ss_pred             cCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeec
Q 018971          278 WGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQN  338 (348)
Q Consensus       278 WGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~~  338 (348)
                      |||++||+|||++|+++|.||+.+   ++  .+..||++. ..++|+|+|++ +|||||+.
T Consensus        86 WGg~iEL~Als~~~~~~I~V~~~~---~~--~~~~~~~~~-~~~~I~L~Y~g-~HYdsl~~  139 (212)
T 3by4_A           86 WGGAIEIGIISDALAVAIYVVDID---AV--KIEKFNEDK-FDNYILILFNG-IHYDSLTM  139 (212)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEEETT---TT--EEEEESTTT-CSEEEEEEECS-SCEEEEEE
T ss_pred             EccHHHHHHHHHHHCCCEEEEECC---CC--CeEEeCCCC-CCCeEEEEEcC-CcceEEec
Confidence            999999999999999999999974   22  356788775 56899999996 59999987

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.97  E-value=3e-31  Score=239.28  Aligned_cols=139  Identities=17%  Similarity=0.296  Sum_probs=113.0

Q ss_pred             CCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhhCCCCc
Q 018971          199 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVW  278 (348)
Q Consensus       199 ~gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fie~dfd~Y~~~M~k~gtW  278 (348)
                      .+|.+.+||||||||||||++||+.+  .+.+.   .+..|.+||+.+++||++|+++  .+++++|++||++|+++++|
T Consensus        29 ~~~~v~rv~gDGnCLFrAva~qL~~~--~~~~~---~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~W  101 (185)
T 3phx_A           29 DYFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEW  101 (185)
T ss_dssp             HHEEEECCCSSTTHHHHHHHHHHSTT--CCTTT---HHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCC
T ss_pred             cCeEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCcc
Confidence            45889999999999999999999842  12111   1355999999999999999988  45789999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCCCCCCC
Q 018971          279 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGIS  346 (348)
Q Consensus       279 GG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~~~~~~~~~~  346 (348)
                      ||++||+|+|++|+++|+||+.+.+. .++.+..||++. ..++|+|+|++.+|||+|+....+.+..
T Consensus       102 Gg~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~-~~~~I~L~Y~g~~HYdsl~~~~~~~~~~  167 (185)
T 3phx_A          102 GSTLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGD-VFTAVNLLHSGQTHFDALRILPQFETDT  167 (185)
T ss_dssp             CBHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCC-TTTSEEEEEETTTEEEEEEECGGGC---
T ss_pred             CcHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCC-CCCEEEEEECCCcCchhceECCCCCCCC
Confidence            99999999999999999999987542 234577888765 3689999999977999999977666554

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.97  E-value=1.5e-30  Score=240.55  Aligned_cols=139  Identities=17%  Similarity=0.293  Sum_probs=116.1

Q ss_pred             CCcEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhccccCHHHHHHHhhCCCCc
Q 018971          199 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVW  278 (348)
Q Consensus       199 ~gL~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fie~dfd~Y~~~M~k~gtW  278 (348)
                      .+|.+++||||||||||||++||+.+  .+.+  . .+..|.+||+.+++||++|+++  .+++++|++||++|+++++|
T Consensus        29 ~~~~V~rvpgDGnCLFrAVs~qL~~~--~~~~--~-~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~W  101 (219)
T 3phu_A           29 DYFEIVRQPGDGNCFYHSIAELTMPN--KTDH--S-YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEW  101 (219)
T ss_dssp             HHEEEECCCCSSCHHHHHHHHHHCTT--CCTT--T-HHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCC
T ss_pred             cceEEEccCCCCchHHHHHHHHHhCC--Cccc--h-hhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCcc
Confidence            45889999999999999999999842  1211  1 1345999999999999999998  45789999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeeecCCCCCCCC
Q 018971          279 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGIS  346 (348)
Q Consensus       279 GG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~~~~~~~~~~  346 (348)
                      ||++||+|+|++|+++|+||+.+.+ +..+.+..||++.. .++|+|+|++.+|||+|++...+.+..
T Consensus       102 GG~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge~~~-~~~I~L~Y~g~~HYdSL~~~~d~~~~~  167 (219)
T 3phu_A          102 GSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDV-FTAVNLLHSGQTHFDALRILPQFETDT  167 (219)
T ss_dssp             CCHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESSCCT-TTSEEEEEETTTEEEEEEECTTTCCSC
T ss_pred             CCHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecCCCC-CCeEEEEECCCcCchhheECCCCCCCC
Confidence            9999999999999999999998743 23455778987753 689999999977999999977766544

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.87  E-value=9.8e-22  Score=182.69  Aligned_cols=99  Identities=15%  Similarity=0.215  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 018971          238 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG  314 (348)
Q Consensus       238 ~h~eLR~~vvdy~~~n~e~fe~fie~--dfd~Y~~-~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G  314 (348)
                      ....||..++.||+.|+++|+||+++  +|++||+ .++.+++|||++||+|||++|+++|.|++.|.+. +.+....|.
T Consensus       131 iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~  209 (234)
T 1tff_A          131 IVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFP  209 (234)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCC
T ss_pred             HHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCC
Confidence            45679999999999999999999976  7999999 8999999999999999999999999999987653 223334454


Q ss_pred             CCCCCCCeEEEEEcCCCcceeeecCC
Q 018971          315 QEYGKEKPIRVLYHGFGHYDALQNLG  340 (348)
Q Consensus       315 ~e~~~~~pI~LsYhg~gHYDSL~~~~  340 (348)
                      ++  ..+.|+|+|++ ||||+|+..+
T Consensus       210 ~~--~~~~I~LlY~p-gHYdily~~~  232 (234)
T 1tff_A          210 EA--ATPSVYLLYKT-SHYNILYAAD  232 (234)
T ss_dssp             CC--SSCSEEEEEET-TEEEEEEECC
T ss_pred             CC--CCCeEEEEECC-CCceecccCC
Confidence            32  35679999997 5999998653

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.78  E-value=1.6e-18  Score=165.70  Aligned_cols=103  Identities=16%  Similarity=0.107  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEE-
Q 018971          237 ELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAE-  312 (348)
Q Consensus       237 ~~h~eLR~~vvdy~~~n~e~fe~fie~--dfd~Y~~-~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~-  312 (348)
                      .....||..++.||+.|+++|+||+.+  ++++||+ +|+.+++|||++||+|||++|+++|.|...|+..+..+..+. 
T Consensus       168 ~iv~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~  247 (284)
T 4dhi_B          168 YILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYD  247 (284)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEE
T ss_pred             HHHHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCccccc
Confidence            345689999999999999999999965  7999998 899999999999999999999999999999876544333334 


Q ss_pred             cCCCC-CCCCeEEEEEcCCCcceeeecCC
Q 018971          313 YGQEY-GKEKPIRVLYHGFGHYDALQNLG  340 (348)
Q Consensus       313 ~G~e~-~~~~pI~LsYhg~gHYDSL~~~~  340 (348)
                      |.++. ...+.|+|+|.. ||||.|+..+
T Consensus       248 fp~~~~~~~p~I~LLYrp-gHYDILY~~~  275 (284)
T 4dhi_B          248 IPSDDQQIAPEITLLYRP-GHYDVIYKKD  275 (284)
T ss_dssp             ESCCCSCCCCSEEEEEET-TEEEEEEECC
T ss_pred             CCCCCCCCCCEEEEeecC-CCccccccCC
Confidence            52221 123569999998 5999997654

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.77  E-value=2.4e-18  Score=170.35  Aligned_cols=97  Identities=23%  Similarity=0.335  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 018971          238 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG  314 (348)
Q Consensus       238 ~h~eLR~~vvdy~~~n~e~fe~fie~--dfd~Y~~-~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G  314 (348)
                      ....||..+..||+.|+++|++|+++  ++++||+ +|...++|||++||+|||+.|+++|.|+..|+..++.+....|.
T Consensus       299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~  378 (399)
T 4ddg_A          299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP  378 (399)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT
T ss_pred             HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC
Confidence            45679999999999999999999976  6999999 99999999999999999999999999999887544445555664


Q ss_pred             CCCCCCCeEEEEEcCCCcceeee
Q 018971          315 QEYGKEKPIRVLYHGFGHYDALQ  337 (348)
Q Consensus       315 ~e~~~~~pI~LsYhg~gHYDSL~  337 (348)
                      ++  ..+.|+|+|.. ||||.|+
T Consensus       379 ~~--~~~~I~LLYrP-gHYDiLY  398 (399)
T 4ddg_A          379 EG--SEPKVYLLYRP-GHYDILY  398 (399)
T ss_dssp             TT--CCCCCEEEEET-BEEEEEE
T ss_pred             CC--CCCEEEEEEcC-CccccCC
Confidence            32  45789999976 5999986

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.76  E-value=2.5e-18  Score=159.52  Aligned_cols=114  Identities=20%  Similarity=0.270  Sum_probs=98.1

Q ss_pred             CCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhhhcccc--CHHHHHH-HhhCCCCcCCHHHHH
Q 018971          209 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELL  285 (348)
Q Consensus       209 DGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe~fie~--dfd~Y~~-~M~k~gtWGG~iEL~  285 (348)
                      ||+||++++.+|...            ......||..+++||+.|+++|+||+++  +|++||+ .++.+++|||++||+
T Consensus       117 ~~~~L~~~fndq~~s------------~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~  184 (234)
T 2zfy_A          117 SVADLLASFNDQSTS------------DYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHII  184 (234)
T ss_dssp             CHHHHHHHHTSHHHH------------HHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHH
T ss_pred             CHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHH
Confidence            999999999999752            2568899999999999999999999976  7999997 699999999999999


Q ss_pred             HHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCcceeee
Q 018971          286 MASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQ  337 (348)
Q Consensus       286 ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~e~~~~~pI~LsYhg~gHYDSL~  337 (348)
                      |||++|+++|.|++.|...++.+....|+++  ..++|+|+|+. ||||+|.
T Consensus       185 ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~--~~p~I~LlY~p-gHYdiLy  233 (234)
T 2zfy_A          185 ALAQALSVSIQVEYMDRGEGGTTNPHIFPEG--SEPKVYLLYRP-GHYDILY  233 (234)
T ss_dssp             HHHHHHTCCEEEEECC-CCSSCCEEEEESTT--CCCSEEEEEET-TEEEEEE
T ss_pred             HHHHHhCCCEEEEEcCCCCCCcccceeCCCC--CCCeEEEEECC-CCcccCC
Confidence            9999999999999998765444556677653  45789999996 5999996

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.66  E-value=1.1e-07  Score=93.76  Aligned_cols=140  Identities=20%  Similarity=0.334  Sum_probs=88.5

Q ss_pred             cEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhh----hhhc-------c----ccCH
Q 018971          201 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE----TEWF-------I----EGDF  265 (348)
Q Consensus       201 L~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~----fe~f-------i----e~df  265 (348)
                      |....+.||||||.+|++..++   |-++.+..+|+.++.-||+.....|+.+...    ...|       .    ..+|
T Consensus       112 L~pL~t~GDGnCLLHAvSqamW---Gv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW  188 (390)
T 3dkb_A          112 LVALKTNGDGNCLMHATSQYMW---GVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEW  188 (390)
T ss_dssp             EEEBCCCCSSCHHHHHHHHHHH---SSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHH
T ss_pred             eEEEEecCCCchHHHHHhHHhc---CCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHH
Confidence            5557889999999999999999   7677788889989988887543334332211    1111       1    2356


Q ss_pred             HHHHHHhhCCCC-------c--CCHHHHHHHHHhcCCCEEEEeec--C--CCCCceEEEEcCC---------CCCCCCeE
Q 018971          266 DLYVSQIRKPHV-------W--GGEPELLMASHVLRMPITVYMHD--K--DAGGLISIAEYGQ---------EYGKEKPI  323 (348)
Q Consensus       266 d~Y~~~M~k~gt-------W--GG~iEL~ALA~ll~~~I~Vy~~d--~--~s~g~i~I~~~G~---------e~~~~~pI  323 (348)
                      ++-++....+..       +  =-++=+.+||++++|||+||...  +  ..++.+....|+.         +.=...||
T Consensus       189 ~~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI  268 (390)
T 3dkb_A          189 DNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPI  268 (390)
T ss_dssp             HHHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCE
T ss_pred             HHHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCce
Confidence            665655443321       1  12556899999999999999632  1  1122222222332         11126799


Q ss_pred             EEEEcCCCcceeeecCCCCCC
Q 018971          324 RVLYHGFGHYDALQNLGHEGG  344 (348)
Q Consensus       324 ~LsYhg~gHYDSL~~~~~~~~  344 (348)
                      .|+|+. |||.+|+.-...++
T Consensus       269 ~LgY~s-~HFsaLV~me~~~~  288 (390)
T 3dkb_A          269 VLGYDS-HHFVPLVTLKDSGP  288 (390)
T ss_dssp             EEEECS-SCEEEEEEBCSSSS
T ss_pred             EEEecc-CceeeeeecccCCC
Confidence            999998 59999988654443

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.27  E-value=3.6e-06  Score=84.26  Aligned_cols=137  Identities=23%  Similarity=0.377  Sum_probs=92.2

Q ss_pred             cEEEeeCCCCchhhHHHHHhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHhcChhhhh---------hcc--c----cCH
Q 018971          201 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE---------WFI--E----GDF  265 (348)
Q Consensus       201 L~I~~IpGDGNCLFRAVS~QL~~~~G~~~~~~~lrr~~h~eLR~~vvdy~~~n~e~fe---------~fi--e----~df  265 (348)
                      |..-...||||||-+|++..|+   |-++.+..||+.+++.|++.- ..|..+...+|         .|.  +    .+|
T Consensus       189 L~pL~t~GDGNCLLHAvSqamW---GV~DrdlvLRkaL~~~L~~~~-~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW  264 (454)
T 3zrh_A          189 LYALWNRTAGDCLLDSVLQATW---GIYDKDSVLRKALHDSLHDCS-HWFYTRWKDWESWYSQSFGLHFSLREEQWQEDW  264 (454)
T ss_dssp             EEEBCCCCSSCHHHHHHHHTTT---SSCCGGGHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred             eeEeeecCCCccHHHHHHHHhh---cccCCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhcCCcccccHHHHHHHH
Confidence            4456889999999999999999   777788889988999888643 23444433211         121  2    357


Q ss_pred             HHHHHHhhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCC---CCceEEEEcCCCC---------CCCCeEEEEEcCCCcc
Q 018971          266 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDA---GGLISIAEYGQEY---------GKEKPIRVLYHGFGHY  333 (348)
Q Consensus       266 d~Y~~~M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s---~g~i~I~~~G~e~---------~~~~pI~LsYhg~gHY  333 (348)
                      +.-++..+.||.==-++=+.+||++++|||+||....-.   ++.+....|+.=|         =...||.|.|+. |||
T Consensus       265 ~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHF  343 (454)
T 3zrh_A          265 AFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHF  343 (454)
T ss_dssp             HHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEE
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cce
Confidence            777777777876555666899999999999999843110   1111111222111         125799999997 499


Q ss_pred             eeeecCCCC
Q 018971          334 DALQNLGHE  342 (348)
Q Consensus       334 DSL~~~~~~  342 (348)
                      .+|..-..+
T Consensus       344 saLV~~~~~  352 (454)
T 3zrh_A          344 SALVAMEND  352 (454)
T ss_dssp             EEEEEBCCC
T ss_pred             eeeeecccc
Confidence            999886554

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=96.18  E-value=0.014  Score=53.88  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=19.0

Q ss_pred             EEEeeCCCCchhhHHHHHhhh
Q 018971          202 SVIGIPGDGRCLFRAVAHGAC  222 (348)
Q Consensus       202 ~I~~IpGDGNCLFRAVS~QL~  222 (348)
                      .++.|.|||||+|||++.+..
T Consensus        44 ~~R~vRgDGNCFyRaf~f~yl   64 (234)
T 2zfy_A           44 YIRKTRPDGNCFYRAFGFSHL   64 (234)
T ss_dssp             EEECBCCSSCHHHHHHHHHHH
T ss_pred             ceeeccCCccHHHHHHHHHHH
Confidence            568999999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	2e-13

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 2e-13
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 242 LRAKVADEFIKRREETEWFIEGDFDL---YVSQIRKPHVWGGEPELLMASHVLRMPITVY 298
           LR   +     R +    FI+ + D+      ++          ++   S  L + + V 
Sbjct: 129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVE 188

Query: 299 MHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDAL 336
             D+       +  +         + +LY    HY+ L
Sbjct: 189 YVDEMDTA---LNHHVFPEAATPSVYLLYKT-SHYNIL 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.82

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.7e-20  Score=167.98  Aligned_cols=98  Identities=15%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhcChhhhhhcccc--CHHHHHHH-hhCCCCcCCHHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCC
Q 018971          239 ADDLRAKVADEFIKRREETEWFIEG--DFDLYVSQ-IRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQ  315 (348)
Q Consensus       239 h~eLR~~vvdy~~~n~e~fe~fie~--dfd~Y~~~-M~k~gtWGG~iEL~ALA~ll~~~I~Vy~~d~~s~g~i~I~~~G~  315 (348)
                      ...+|..++.||+.|+++|.+|+++  ++++||.+ |.++++|||++||+|+|++|+++|+|+..+.+. +.+....+++
T Consensus       126 v~~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~-~~~~~~~~~~  204 (228)
T d1tffa_         126 VQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFPE  204 (228)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCC
T ss_pred             HHHHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCC-CccccccCCC
Confidence            3468999999999999999999964  69999985 899999999999999999999999999988653 2333334443


Q ss_pred             CCCCCCeEEEEEcCCCcceeeecCC
Q 018971          316 EYGKEKPIRVLYHGFGHYDALQNLG  340 (348)
Q Consensus       316 e~~~~~pI~LsYhg~gHYDSL~~~~  340 (348)
                      +  ..++|+|+|.+ ||||.|+..+
T Consensus       205 ~--~~~~I~Lly~p-gHYdiLY~~~  226 (228)
T d1tffa_         205 A--ATPSVYLLYKT-SHYNILYAAD  226 (228)
T ss_dssp             C--SSCSEEEEEET-TEEEEEEECC
T ss_pred             C--CCCEEEEEeCC-CCcccCccCC
Confidence            3  45789999987 6999998764