Citrus Sinensis ID: 018987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAEKGTGDGVAKAPAWNSNKDLHA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEEEEccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHEEEEEEHHHHccccccHHHHHHHHHHHHHHHEHHHHEEcccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msegqkfqlgtvGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLfehkpfdpravmgFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSstqllyqscpyqalTLFIigpfldglltnknvfafkyTPYVLFFIVLSCLISVSVNFSTFLVigktspvtYQVLGHLKTCLVLAFGYvllhdpfsWRNILGILIAVIGMVLYSYCCSlesqqkasetssqlpqvkegetdplinaekgtgdgvakapawnsnkdlha
Flexible Loop (DISEMBL)
msegqkfqlgtvgALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKasetssqlpqvkegetdplinaekgtgdgvakapawnsnkdlha
Low Complexity Region (SEG)
MSEGQKFQLGTVGAlslsvissvsiviCNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFgvlngisigllnlslgfnsvgFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSlvillvgvgiATVTDlqlnvlgsvlsllavlTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAEKGTGDGVAKAPAWNSNKDLHA
Disordered region (IsUnstruct)
*******QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSL*************************************************
Disordered Region (DISOPRED)
************GALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQ****VSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS******************************************************
Disordered Region (DISEMBL)
*********GTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSL*****************EGETDPLINAEKGTGDGVAKAPAWNSNKDLHA
Disordered Region (DISPRO)
****QKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE************************************************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAEKGTGDGVAKAPAWNSNKDLHA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q8RXL8	357	Uncharacterized membrane	yes	no	1.0	0.974	0.865	1e-171
Q9SRE4	347	UDP-galactose transporter	no	no	0.870	0.873	0.386	6e-54
Q1JQ66	313	Solute carrier family 35	yes	no	0.859	0.955	0.331	2e-39
Q7Z769	313	Solute carrier family 35	yes	no	0.856	0.952	0.322	1e-33
A4IFK2	313	Solute carrier family 35	yes	no	0.856	0.952	0.325	2e-33
Q6PGC7	313	Solute carrier family 35	yes	no	0.856	0.952	0.312	6e-33
Q9C521	336	UDP-galactose transporter	no	no	0.879	0.910	0.274	1e-24
Q9SFE9	341	GDP-mannose transporter G	no	no	0.919	0.938	0.265	2e-23
Q9LFN3	351	Probable sugar phosphate/	no	no	0.896	0.888	0.252	2e-16
Q3E6T0	349	Probable sugar phosphate/	no	no	0.873	0.871	0.268	1e-15

>sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1

 Score =  600 bits (1546), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/357 (86%), Positives = 330/357 (92%), Gaps = 9/357 (2%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           MSEGQKFQLGT+GALSLSV+SSVSIVICNKALIS+LGFTFATTLTSWHLLVTFCSLHVAL
Sbjct: 1   MSEGQKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVAL 60

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
           WMK+FEHKPFDPRAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFF
Sbjct: 61  WMKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFF 120

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RKKFSR IQ SL ILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKKFKV
Sbjct: 121 RKKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKV 180

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFST
Sbjct: 181 SSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFST 240

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E
Sbjct: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIE 300

Query: 301 SQQKASETSSQLPQVKEGETDPLINAEKGT------GDGVAK---APAWNSNKDLHA 348
           +QQKASETS+QLPQ+KE E DPLI AE G+      G GV +   AP WNSNKD  A
Sbjct: 301 TQQKASETSTQLPQMKESEKDPLIAAENGSGVLSDGGGGVQQKTVAPVWNSNKDFQA 357

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRE4|UGAL2_ARATH UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1

 Score =  211 bits (537), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 198/329 (60%), Gaps = 26/329 (7%)

Query: 5   QKFQLGTVGALSLSVISSVSIVICNKALISS--LGFTFATTLTSWHLLVTF--------- 53
           +K  +  VGA +++VISSV I++ NK L+SS   GF FATTLT +H   T          
Sbjct: 8   KKSAVSDVGAWAMNVISSVGIIMANKQLMSSSGFGFGFATTLTGFHFAFTALVGMVSNAT 67

Query: 54  ---CSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIP 110
               S HV LW  L+            F ++  ISI  +N SL  NSVGFYQ++KL++IP
Sbjct: 68  GLSASKHVPLWELLW------------FSIVANISIAAMNFSLMLNSVGFYQISKLSMIP 115

Query: 111 CTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIM 170
              +LE +   K + + ++ S++++++GVGI TVTD+++N  G + +  AV +T + QI 
Sbjct: 116 VVCVLEWILHSKHYCKEVKASVMVVVIGVGICTVTDVKVNAKGFICACTAVFSTSLQQIS 175

Query: 171 TNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC 230
             ++QKK+ V S +LL ++ P QA++L I GPF+D LL+ K +  ++ T   +F I+LSC
Sbjct: 176 IGSLQKKYSVGSFELLSKTAPIQAISLLICGPFVDYLLSGKFISTYQMTYGAIFCILLSC 235

Query: 231 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGM 290
            ++V  N S +L IG+ S  ++QVLGH+KT  VL  G++L     +++NI G+ IA++GM
Sbjct: 236 ALAVFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSEMTFKNIAGMAIAIVGM 295

Query: 291 VLYSYCCSLESQQKASETSSQLPQVKEGE 319
           V+YS+   +E Q+ A  T      + E E
Sbjct: 296 VIYSWAVDIEKQRNAKSTPHGKHSMTEDE 324

UDP-galactose transporter that transports UDP-galactose, UDP-glucose and GDP-fucose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1JQ66|S35E3_DANRE Solute carrier family 35 member E3 OS=Danio rerio GN=slc35e3 PE=2 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 166/302 (54%), Gaps = 3/302 (0%)

Query: 12  VGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFD 71
           +  L ++++SS+ IV  NK +    GF    TLT  H ++T+  L +   M +F  K   
Sbjct: 15  IAGLLVNLLSSICIVFINKWIYVHYGFP-NMTLTLIHFVMTWLGLFICQKMDIFAPKSLR 73

Query: 72  PRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLS 131
           P  ++   +     +   NLSL  N++G YQ+ K+   P  I ++T+++RK FS  I+L+
Sbjct: 74  PSKILLLALSFCGFVVFTNLSLQSNTIGTYQLAKVMTTPVIIAIQTMYYRKTFSTKIKLT 133

Query: 132 LVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCP 191
           LV + +GV + +  D++ N++G + + L VL T + Q+     Q + +V+S QLLY   P
Sbjct: 134 LVPITLGVILNSYYDVRFNLMGMIFATLGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAP 193

Query: 192 YQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVT 251
             +  L ++ PF + L  +  +F   ++   LF ++LS +I+  VN S + +IG TSPVT
Sbjct: 194 MSSAFLLVLVPFFEPLTGDGGIFG-PWSFLALFMVLLSGVIAFLVNLSIYWIIGNTSPVT 252

Query: 252 YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQ 311
           Y + GH K C+ L  GYVL  DP S    LGIL  + G++ Y++   L  Q++     +Q
Sbjct: 253 YNMFGHFKFCITLLGGYVLFQDPLSLNQGLGILCTLTGILAYTH-FKLAEQEEGKSRLTQ 311

Query: 312 LP 313
            P
Sbjct: 312 RP 313

Putative transporter.

Danio rerio (taxid: 7955)

>sp|Q7Z769|S35E3_HUMAN Solute carrier family 35 member E3 OS=Homo sapiens GN=SLC35E3 PE=2 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 157/301 (52%), Gaps = 3/301 (0%)

Query: 13  GALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDP 72
             L  +++ S+ IV  NK +    GF    +LT  H +VT+  L++   + +F  K   P
Sbjct: 16  AGLLFNLLVSICIVFLNKWIYVYHGFP-NMSLTLVHFVVTWLGLYICQKLDIFAPKSLPP 74

Query: 73  RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSL 132
             ++   +     +   NLSL  N++G YQ+ K    P  I ++T  ++K FS  IQL+L
Sbjct: 75  SRLLLLALSFCGFVVFTNLSLQNNTIGTYQLAKAMTTPVIIAIQTFCYQKTFSTRIQLTL 134

Query: 133 VILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPY 192
           + + +GV + +  D++ N LG V + L VL T + Q+     Q + +V+S QLLY   P 
Sbjct: 135 IPITLGVILNSYYDVKFNFLGMVFAALGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPM 194

Query: 193 QALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTY 252
            +  L +  PF + +     +F   ++   L  ++LS +I+  VN S + +IG TSPVTY
Sbjct: 195 SSAMLLVAVPFFEPVFGEGGIFG-PWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTY 253

Query: 253 QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQL 312
            + GH K C+ L  GYVL  DP S    LGIL  + G++ Y++   L  Q+ +    +Q 
Sbjct: 254 NMFGHFKFCITLFGGYVLFKDPLSINQALGILCTLFGILAYTH-FKLSEQEGSRSKLAQR 312

Query: 313 P 313
           P
Sbjct: 313 P 313

Putative transporter.

Homo sapiens (taxid: 9606)

>sp|A4IFK2|S35E3_BOVIN Solute carrier family 35 member E3 OS=Bos taurus GN=SLC35E3 PE=2 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 160/301 (53%), Gaps = 3/301 (0%)

Query: 13  GALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDP 72
             L L+++ S+ IV  NK +    GF    +LT  H +VT+  L+V   + +F  K   P
Sbjct: 16  AGLLLNLLVSICIVFLNKWIYVHYGFP-NMSLTLVHFVVTWLGLYVCQKLDIFAPKSLPP 74

Query: 73  RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSL 132
             ++   +     +   NLSL  N++G YQ+ K    P  I+++TL ++K FS  I+L+L
Sbjct: 75  SKLLLLALSFCGFVVFTNLSLQNNTIGTYQLAKAMTTPVIIVIQTLCYKKTFSTKIRLTL 134

Query: 133 VILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPY 192
           + + +GV + +  D++ N LG+V + L VL T + Q+     Q + +V+S QLLY   P 
Sbjct: 135 IPITLGVILNSYYDVKFNFLGTVFAALGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPM 194

Query: 193 QALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTY 252
            +  L +  PF + +     +F   ++   L  ++LS +I+  VN S + +IG TSPVTY
Sbjct: 195 SSAMLLVAVPFFEPVFAEGGIFG-PWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTY 253

Query: 253 QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQL 312
            + GH K C+ L  GYVL  DP S    LG+L  + G++ Y++   L  Q+ +     Q 
Sbjct: 254 NMFGHFKFCITLFGGYVLFKDPLSINQGLGMLCTLFGILAYTH-FKLSEQEGSKSKLVQR 312

Query: 313 P 313
           P
Sbjct: 313 P 313

Putative transporter.

Bos taurus (taxid: 9913)

>sp|Q6PGC7|S35E3_MOUSE Solute carrier family 35 member E3 OS=Mus musculus GN=Slc35e3 PE=2 SV=1

 Score =  141 bits (356), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 157/301 (52%), Gaps = 3/301 (0%)

Query: 13  GALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDP 72
             L  +++ S+ IV  NK +    GF    +LT  H +VT+  L++   + +F  K    
Sbjct: 16  AGLLFNLLVSICIVFLNKWIYVHHGFP-NMSLTLVHFVVTWLGLYICQKLNIFAPKSLPL 74

Query: 73  RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSL 132
             ++   +     +   NLSL  N++G YQ+ K    P  I ++T +++K+FS  IQL+L
Sbjct: 75  SKLLLLALSFCGFVVFTNLSLQNNTIGTYQLAKAMTTPVIIAIQTFWYQKRFSVRIQLTL 134

Query: 133 VILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPY 192
           + + VGV + +  D++ + LG V + L V+ T + Q+     Q + +V+S QLLY   P 
Sbjct: 135 IPITVGVILNSYYDVKFHSLGMVFAALGVVVTSLYQVWVGAKQHELQVNSMQLLYYQAPM 194

Query: 193 QALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTY 252
            +  L +  PF + +     +F   ++   L  ++LS +I+  VN S + +IG TSPVTY
Sbjct: 195 SSAMLLVAVPFFEPVFAEGGIFG-PWSVSALLMVLLSGIIAFMVNLSIYWIIGNTSPVTY 253

Query: 253 QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQL 312
            + GH K C+ L  GY+L  DP S    LGIL  + G++ Y++   L  Q+ +     Q 
Sbjct: 254 NMFGHFKFCITLCGGYILFKDPLSVNQGLGILCTLFGILTYTH-FKLSEQEGSKSKLVQR 312

Query: 313 P 313
           P
Sbjct: 313 P 313

Putative transporter.

Mus musculus (taxid: 10090)

>sp|Q9C521|UGAL1_ARATH UDP-galactose transporter 1 OS=Arabidopsis thaliana GN=UDP-GALT1 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 154/321 (47%), Gaps = 15/321 (4%)

Query: 22  SVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPF---DP----RA 74
           +V+++I NK +   L F F  +++  H + +    ++ +  K+ + KP    DP    R 
Sbjct: 20  NVTVIIMNKWIFQKLDFKFPLSVSCVHFICSSIGAYIVI--KVLKLKPLIVVDPEDRWRR 77

Query: 75  VMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVI 134
           +     +  I+I L N+SL +  V F Q  K      T++L+ L +RK F   I  SLV 
Sbjct: 78  IFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVP 137

Query: 135 LLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQA 194
           ++ G+ + +VT+L  N+ G   +L   L T    I+  ++   +K  S   +Y   P+  
Sbjct: 138 IVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHGYKFDSINTVYYMAPFAT 197

Query: 195 LTLFIIGPFLD--GLLTNKNVFAFKYTPYVLFFIVLSC-LISVSVNFSTFLVIGKTSPVT 251
           + L I    L+  G+L+    F     P+    I+LS  +++  +NFS F VI  T+ VT
Sbjct: 198 MILGIPALLLEGSGILS---WFEAHPAPWSALIIILSSGVLAFCLNFSIFYVIHSTTAVT 254

Query: 252 YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQ 311
           + V G+LK  + +   +++  +P S+ N +G  I ++G   Y Y   + SQQ      + 
Sbjct: 255 FNVAGNLKVAVAVMVSWLIFRNPISYMNAVGCGITLVGCTFYGYVRHMLSQQTPGTPRTP 314

Query: 312 LPQVKEGETDPLINAEKGTGD 332
                + E  PL+N +K  G 
Sbjct: 315 RTPRSKMELLPLVNNDKLEGK 335

UDP-galactose transporter that transports UDP-galactose, UDP-glucose and GDP-fucose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFE9|GONS5_ARATH GDP-mannose transporter GONST5 OS=Arabidopsis thaliana GN=GONST5 PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 162/343 (47%), Gaps = 23/343 (6%)

Query: 1   MSEGQKFQLGTVGALSLSVIS----SVSIVICNKALISSLGFTFATTLTSWHLLVTFCSL 56
           M EG  ++  T+    LS++     +V+++I NK +   L F F  +++  H + +    
Sbjct: 1   MEEGSLWRQWTMFRSLLSILQWWGFNVTVIIMNKWIFQKLDFKFPLSVSCVHFICSSIGA 60

Query: 57  HVALWMKLFEHKPF---DP----RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAII 109
           ++ +  K+ + KP    DP    R +     +  I+I L N+SL +  V F Q  K    
Sbjct: 61  YIVI--KVLKLKPLIVVDPEDRWRRIFPMSFVFCINIVLGNISLRYIPVSFMQTIKSLTP 118

Query: 110 PCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQI 169
             T++L+ L +RK F   I  SLV ++ G+ + ++T+L  NV G   +L   L T    I
Sbjct: 119 ATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSITELSFNVFGFCAALFGCLATSTKTI 178

Query: 170 MTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKN----VFAFKYTPYVLFF 225
           +  ++   +K  S   +Y   P+  +   I+G  L   L  +N     F    +P+    
Sbjct: 179 LAESLLHGYKFDSINTVYYMAPFATM---ILG--LPAFLLERNGILDWFEAHPSPWSALI 233

Query: 226 IVL-SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGIL 284
           I+  S +++  +NFS F VI  T+ VT+ V G+LK  + +   +++  +P S  N +G  
Sbjct: 234 ILFNSGVLAFCLNFSIFYVIQSTTAVTFNVAGNLKVAVAVFVSWMIFRNPISPMNAVGCG 293

Query: 285 IAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAE 327
           I ++G   Y Y   + SQQ+     +      + E  PL+N +
Sbjct: 294 ITLVGCTFYGYVRHMLSQQQPGTPRTPRTPRNKMELIPLVNDK 336

GDP-mannose transporter that may be involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFN3|PT511_ARATH Probable sugar phosphate/phosphate translocator At5g11230 OS=Arabidopsis thaliana GN=At5g11230 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 169/361 (46%), Gaps = 49/361 (13%)

Query: 9   LGTVGALSLSVISSV---------------SIVICNKALISS--LGFTFATTLTSWHLLV 51
           +G  GALS SVI ++               ++++ NK ++      + F  +LT  H+  
Sbjct: 1   MGKGGALSESVIKNIVLSYSYVAIWIFLSFTVIVYNKYILDKKMYNWPFPISLTMIHM-- 58

Query: 52  TFCSLHVALWMKLFEHKPFDP---------RAVMGFGVLNGISIGLLNLSLGFNSVGFYQ 102
           +FCS    L +K+F  K  +P         R+V+  G L  +S+ L N +  + SV F Q
Sbjct: 59  SFCSTLAFLIIKVF--KFVEPVKMTRETYLRSVVPIGALYALSLWLSNSAYIYLSVSFIQ 116

Query: 103 MTKLAIIPCTIL-LETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAV 161
           M K A++P  +  +  LF ++ F  +  ++++ +  GV IA   + + +V G +L L AV
Sbjct: 117 MLK-ALMPVAVYSIGVLFKKEGFKSDTMMNMLSISFGVAIAAYGEARFDVWGVILQLGAV 175

Query: 162 LTTCVAQIMTNTI--QKKFKVSSTQLLYQSCPYQALTLFIIGPFLD-GLLTNKNVFAFKY 218
                  ++   +   K  K++    LY   P     LFI   +++  +L + + F   Y
Sbjct: 176 AFEATRLVLIQILLGDKGIKLNPITSLYYVAPCCLAFLFIPWIYVEFPVLRDTSSFHLDY 235

Query: 219 TPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWR 278
             +       +   + ++N + FL++GKTS +T  V G +K  L++AF + ++ D  +  
Sbjct: 236 AIFGA-----NSFCAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIAFSWSVIKDTVTPI 290

Query: 279 NILGILIAVIGMVLYSYC---------CSLESQQKASETSSQLPQVKEGETDPLINAEKG 329
           N+ G  IA +G+  Y++             +  Q+A E S +L + +EG+ +   N + G
Sbjct: 291 NLFGYGIAFLGVAYYNHAKLQALKAKEEEKKKIQQADEESGRLLEEREGDVEGKKNDQSG 350

Query: 330 T 330
            
Sbjct: 351 N 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6T0|PT525_ARATH Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana GN=At5g25400 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 160/332 (48%), Gaps = 28/332 (8%)

Query: 22  SVSIVICNKALISS--LGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDP------- 72
           S ++++ NK ++      + F  +LT  H+  +FCS    L +K+F  K  +P       
Sbjct: 29  SFTVIVYNKYILDKKMYDWPFPISLTMIHM--SFCSTLAFLLIKVF--KFVEPVSMSRDT 84

Query: 73  --RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTIL-LETLFFRKKFSRNIQ 129
             R+V+  G L  +S+ L N +  + SV F QM K A++P  +  +  LF ++ F     
Sbjct: 85  YLRSVVPIGALYSLSLWLSNSAYIYLSVSFIQMLK-ALMPVAVYSIGVLFKKEGFKSETM 143

Query: 130 LSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTI--QKKFKVSSTQLLY 187
           ++++ +  GV IA   + + +V G +L L AV       +M   +   K   ++    LY
Sbjct: 144 MNMLSISFGVAIAAYGEARFDVWGVILQLGAVAFEATRLVMIQILLTSKGITLNPITSLY 203

Query: 188 QSCPYQALTLFIIGPFLD-GLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGK 246
              P     LFI    ++  +L + + F F Y   ++F     C  + ++N + FL++GK
Sbjct: 204 YVAPCCLAFLFIPWIVVEFPILRDTSSFHFDY---LIFGTNSFC--AFALNLAVFLLVGK 258

Query: 247 TSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKAS 306
           TS +T  V G +K  L++AF + ++ D  +  N+ G  IA +G+  Y++      + K +
Sbjct: 259 TSALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLFGYGIAFLGVAYYNHAKLQALKAKEA 318

Query: 307 ETSSQLPQVKEGETDPLINAEKGTGDGVAKAP 338
           + ++Q  QV E ET  L+   +G   G    P
Sbjct: 319 QKTAQ--QVDE-ETGRLLEEREGNEGGRKNEP 347

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
255554489	369	UDP-glucuronic acid/UDP-N-acetylgalactos	1.0	0.943	0.903	1e-174
118483005	353	unknown [Populus trichocarpa] gi|1184890	1.0	0.985	0.889	1e-171
224145447	353	predicted protein [Populus trichocarpa]	1.0	0.985	0.886	1e-170
297848964	357	hypothetical protein ARALYDRAFT_470711 [	1.0	0.974	0.865	1e-169
22329373	357	nodulin MtN21 /EamA-like transporter pro	1.0	0.974	0.865	1e-169
238479401	353	Nucleotide/sugar transporter family prot	1.0	0.985	0.852	1e-165
334182354	353	nodulin MtN21 /EamA-like transporter pro	0.951	0.937	0.900	1e-165
297826457	353	hypothetical protein ARALYDRAFT_320800 [	1.0	0.985	0.852	1e-164
449439189	353	PREDICTED: uncharacterized membrane prot	1.0	0.985	0.864	1e-163
225434347	352	PREDICTED: uncharacterized membrane prot	1.0	0.988	0.866	1e-160

>gi|255554489|ref|XP_002518283.1| UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis] gi|223542503|gb|EEF44043.1| UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 318/352 (90%), Positives = 335/352 (95%), Gaps = 4/352 (1%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           MSE Q+FQLGTVGALSLSV+SSVSIVICNKALIS+LGFTFATTLTSWHLLVTFCSLHVAL
Sbjct: 18  MSESQRFQLGTVGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVAL 77

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
           WMK+FEHKPFD RAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFF
Sbjct: 78  WMKMFEHKPFDARAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFF 137

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RKKFSRNIQ SL ILL+GVGIATVTDLQLNVLGSVLSLLAV+TTC+AQIMTNTIQKKFKV
Sbjct: 138 RKKFSRNIQFSLTILLLGVGIATVTDLQLNVLGSVLSLLAVVTTCIAQIMTNTIQKKFKV 197

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQA+TLFIIGPFLDGLLTN NVFAFKYTP VLFFIVLSCLISVSVNFST
Sbjct: 198 SSTQLLYQSCPYQAITLFIIGPFLDGLLTNLNVFAFKYTPQVLFFIVLSCLISVSVNFST 257

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPFSWRNILGILIAVIGMVLYSYCC++E
Sbjct: 258 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFSWRNILGILIAVIGMVLYSYCCTVE 317

Query: 301 SQQKASETSSQLPQVKEGETDPLINAEKGTG---DGVA-KAPAWNSNKDLHA 348
           +QQKASETS +LP+VKEGE+DPLI  E G+G   DGV  KAP WNSNKDLHA
Sbjct: 318 NQQKASETSVKLPEVKEGESDPLIGVENGSGILADGVVPKAPVWNSNKDLHA 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483005|gb|ABK93414.1| unknown [Populus trichocarpa] gi|118489025|gb|ABK96320.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 314/353 (88%), Positives = 333/353 (94%), Gaps = 5/353 (1%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           MSEGQKFQLGTVGALSLSV+SSVSIVICNKALIS+LGFTFATTLTSWHLLVTFCSLH+AL
Sbjct: 1   MSEGQKFQLGTVGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHMAL 60

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
           WMKLFEHKPFD RAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFF
Sbjct: 61  WMKLFEHKPFDARAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFF 120

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RK+FSR+IQLSL ILL+GVGIATVTDLQLNVLGS+LSLLAVLTTCVAQIMTNTIQKKF+V
Sbjct: 121 RKQFSRSIQLSLTILLMGVGIATVTDLQLNVLGSILSLLAVLTTCVAQIMTNTIQKKFRV 180

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQALTLFI+GPFLDGLLTNKNV AFKYTP VLFFIVLSCLISVSVNFST
Sbjct: 181 SSTQLLYQSCPYQALTLFIVGPFLDGLLTNKNVLAFKYTPLVLFFIVLSCLISVSVNFST 240

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPFSWRNILGILIAV+GMVLYSYCC+LE
Sbjct: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFSWRNILGILIAVVGMVLYSYCCTLE 300

Query: 301 SQQKASETSSQLPQVKEGETDPLINAEKGTG----DGVAK-APAWNSNKDLHA 348
           +QQK +E  ++LP+VKE ETDPLI+AE GTG     GV K  P WNSNKDL A
Sbjct: 301 NQQKQNEAPAKLPEVKESETDPLISAENGTGILADGGVPKVVPLWNSNKDLDA 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145447|ref|XP_002325646.1| predicted protein [Populus trichocarpa] gi|222862521|gb|EEF00028.1| predicted protein [Populus trichocarpa]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 313/353 (88%), Positives = 332/353 (94%), Gaps = 5/353 (1%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           MSEGQKFQLGTVGALSLSV+SSVSIVICNKALIS+LGFTFATTLTSWHLLVTFCSLH+AL
Sbjct: 1   MSEGQKFQLGTVGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHMAL 60

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
           WMKLFEHKPFD RAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFF
Sbjct: 61  WMKLFEHKPFDARAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFF 120

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RK+FSR+IQLSL ILL+GVGIATVTDLQLNVLGS+LSLLAVLTTCVAQIMTNTIQKKF+V
Sbjct: 121 RKQFSRSIQLSLTILLMGVGIATVTDLQLNVLGSILSLLAVLTTCVAQIMTNTIQKKFRV 180

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQALTLFI+GPFLDGLLTNKNV AFKYTP VLFFIVLSCLISVSVNFST
Sbjct: 181 SSTQLLYQSCPYQALTLFIVGPFLDGLLTNKNVLAFKYTPLVLFFIVLSCLISVSVNFST 240

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPFSWRNILGILIAV+GMVLYSYCC+LE
Sbjct: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFSWRNILGILIAVVGMVLYSYCCTLE 300

Query: 301 SQQKASETSSQLPQVKEGETDPLINAEKGTG---DGVAK--APAWNSNKDLHA 348
           +QQK +E  ++LP+VKE ETDPLI+AE GTG   DG      P WNSNKDL A
Sbjct: 301 NQQKQNEAPAKLPEVKESETDPLISAENGTGILADGGVPNVVPLWNSNKDLDA 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848964|ref|XP_002892363.1| hypothetical protein ARALYDRAFT_470711 [Arabidopsis lyrata subsp. lyrata] gi|297338205|gb|EFH68622.1| hypothetical protein ARALYDRAFT_470711 [Arabidopsis lyrata subsp. lyrata]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 309/357 (86%), Positives = 330/357 (92%), Gaps = 9/357 (2%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           MSEGQKFQLGT+GALSLSV+SSVSIVICNKALIS+LGFTFATTLTSWHLLVTFCSLHVAL
Sbjct: 1   MSEGQKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVAL 60

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
           WMK+FEHKPFDPRAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFF
Sbjct: 61  WMKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFF 120

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RKKFSR IQ SL ILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKKFKV
Sbjct: 121 RKKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKV 180

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFST
Sbjct: 181 SSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFST 240

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E
Sbjct: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIE 300

Query: 301 SQQKASETSSQLPQVKEGETDPLINAEKGT------GDGVAK---APAWNSNKDLHA 348
           +QQKASETS+QLPQ+KE E DPLI AE G+      G GV +   AP WNSNKD  A
Sbjct: 301 TQQKASETSTQLPQMKESENDPLIAAENGSGVLSDGGGGVQQKTVAPVWNSNKDFQA 357

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329373|ref|NP_172172.2| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|145323764|ref|NP_001077471.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|75158873|sp|Q8RXL8.1|Y1689_ARATH RecName: Full=Uncharacterized membrane protein At1g06890 gi|19423946|gb|AAL87295.1| unknown protein [Arabidopsis thaliana] gi|21436373|gb|AAM51356.1| unknown protein [Arabidopsis thaliana] gi|332189927|gb|AEE28048.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|332189928|gb|AEE28049.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 309/357 (86%), Positives = 330/357 (92%), Gaps = 9/357 (2%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           MSEGQKFQLGT+GALSLSV+SSVSIVICNKALIS+LGFTFATTLTSWHLLVTFCSLHVAL
Sbjct: 1   MSEGQKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVAL 60

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
           WMK+FEHKPFDPRAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFF
Sbjct: 61  WMKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFF 120

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RKKFSR IQ SL ILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKKFKV
Sbjct: 121 RKKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKV 180

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFST
Sbjct: 181 SSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFST 240

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E
Sbjct: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIE 300

Query: 301 SQQKASETSSQLPQVKEGETDPLINAEKGT------GDGVAK---APAWNSNKDLHA 348
           +QQKASETS+QLPQ+KE E DPLI AE G+      G GV +   AP WNSNKD  A
Sbjct: 301 TQQKASETSTQLPQMKESEKDPLIAAENGSGVLSDGGGGVQQKTVAPVWNSNKDFQA 357

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479401|ref|NP_001154542.1| Nucleotide/sugar transporter family protein [Arabidopsis thaliana] gi|240254554|ref|NP_180604.4| Nucleotide/sugar transporter family protein [Arabidopsis thaliana] gi|27311731|gb|AAO00831.1| putative integral membrane protein [Arabidopsis thaliana] gi|30984584|gb|AAP42755.1| At2g30460 [Arabidopsis thaliana] gi|51970474|dbj|BAD43929.1| integral membrane protein -like [Arabidopsis thaliana] gi|51970498|dbj|BAD43941.1| integral membrane protein -like [Arabidopsis thaliana] gi|51970690|dbj|BAD44037.1| integral membrane protein -like [Arabidopsis thaliana] gi|62319792|dbj|BAD93797.1| integral membrane protein -like [Arabidopsis thaliana] gi|330253296|gb|AEC08390.1| Nucleotide/sugar transporter family protein [Arabidopsis thaliana] gi|330253297|gb|AEC08391.1| Nucleotide/sugar transporter family protein [Arabidopsis thaliana]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/353 (85%), Positives = 328/353 (92%), Gaps = 5/353 (1%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           MS+ QKFQLGT+GALSLSV+SSVSIVICNKALIS+LGFTFATTLTSWHLLVTFCSLHVAL
Sbjct: 1   MSDAQKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVAL 60

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
           WMK FEHKPFDPRAV+GFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT++LET+FF
Sbjct: 61  WMKFFEHKPFDPRAVLGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVVLETIFF 120

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RK FSR IQ SLVILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKK+KV
Sbjct: 121 RKMFSRKIQFSLVILLLGVGIATVTDLQLNMLGSVLSLLAVITTCVAQIMTNTIQKKYKV 180

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFST
Sbjct: 181 SSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFST 240

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTSPVTYQVLGHLKTCLVLAFGY+LL D FSWRNILGIL+AVIGMVLYSY C+LE
Sbjct: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYLLLKDAFSWRNILGILVAVIGMVLYSYYCTLE 300

Query: 301 SQQKASETSSQLPQVKEGETDPLINAEKGTG----DGVAKA-PAWNSNKDLHA 348
           +QQKA+ETS+QLPQ+ E E DPL++AE G+G    +GV K  P WNSNKD  A
Sbjct: 301 TQQKATETSTQLPQMDENEKDPLVSAENGSGLISDNGVQKQDPVWNSNKDFQA 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182354|ref|NP_001184926.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|332189929|gb|AEE28050.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 298/331 (90%), Positives = 318/331 (96%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           MSEGQKFQLGT+GALSLSV+SSVSIVICNKALIS+LGFTFATTLTSWHLLVTFCSLHVAL
Sbjct: 1   MSEGQKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVAL 60

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
           WMK+FEHKPFDPRAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFF
Sbjct: 61  WMKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFF 120

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RKKFSR IQ SL ILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKKFKV
Sbjct: 121 RKKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKV 180

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFST
Sbjct: 181 SSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFST 240

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E
Sbjct: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIE 300

Query: 301 SQQKASETSSQLPQVKEGETDPLINAEKGTG 331
           +QQKASETS+QLPQ+KE E DPLI AE G+G
Sbjct: 301 TQQKASETSTQLPQMKESEKDPLIAAENGSG 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826457|ref|XP_002881111.1| hypothetical protein ARALYDRAFT_320800 [Arabidopsis lyrata subsp. lyrata] gi|297326950|gb|EFH57370.1| hypothetical protein ARALYDRAFT_320800 [Arabidopsis lyrata subsp. lyrata]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 301/353 (85%), Positives = 327/353 (92%), Gaps = 5/353 (1%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           MSE  KFQLGT+GALSLSV+SSVSIVICNKALIS+LGFTFATTLTSWHLLVTFCSLHVAL
Sbjct: 1   MSESHKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVAL 60

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
           WMK FEH+PFDPRAV+GFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT++LET+FF
Sbjct: 61  WMKFFEHQPFDPRAVLGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVVLETIFF 120

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RKKFSR IQ SLVILL+GVGIATVTDLQLN+LGSVLSLLAV+TTCVAQIMTNTIQKK+KV
Sbjct: 121 RKKFSRKIQFSLVILLLGVGIATVTDLQLNMLGSVLSLLAVITTCVAQIMTNTIQKKYKV 180

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFST
Sbjct: 181 SSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFST 240

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTSPVTYQVLGHLKTCLVLAFGY+LL D FSWRNILGIL+AVIGMVLYSY C+LE
Sbjct: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYLLLKDAFSWRNILGILVAVIGMVLYSYYCTLE 300

Query: 301 SQQKASETSSQLPQVKEGETDPLINAEKGTG----DGVAKA-PAWNSNKDLHA 348
           +QQKA+ETS+QLPQ+ E E DPLI+ E G+G    + V KA P WNSNKD  A
Sbjct: 301 TQQKAAETSTQLPQMDENEKDPLISVENGSGLISDNVVPKADPVWNSNKDFQA 353

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439189|ref|XP_004137369.1| PREDICTED: uncharacterized membrane protein At1g06890-like [Cucumis sativus] gi|449519480|ref|XP_004166763.1| PREDICTED: uncharacterized membrane protein At1g06890-like [Cucumis sativus]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 305/353 (86%), Positives = 325/353 (92%), Gaps = 5/353 (1%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           MS+ QKFQLGT+GALSLSV+SSVSIVICNKALIS+LGFTFATTLTSWHLLVTFCSLHVAL
Sbjct: 1   MSDSQKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVAL 60

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
            MKLFEHKPFD RAVMGFG+LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFF
Sbjct: 61  LMKLFEHKPFDARAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFF 120

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RK FS++IQ SL+ILL+GVGIATVTDLQLN LGS LSLLAVLTTCVAQIMTNTIQKKFKV
Sbjct: 121 RKMFSKSIQFSLMILLLGVGIATVTDLQLNALGSFLSLLAVLTTCVAQIMTNTIQKKFKV 180

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQALTLFI GPFLD  LT+ NVFAFKYTP VLFFIVLSCLISVSVNFST
Sbjct: 181 SSTQLLYQSCPYQALTLFIAGPFLDWCLTDLNVFAFKYTPQVLFFIVLSCLISVSVNFST 240

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTS VTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGIL+A++GMVLYSY C+LE
Sbjct: 241 FLVIGKTSAVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILVAIVGMVLYSYYCTLE 300

Query: 301 SQQKASETSS-QLPQVKEGETDPLINAEKGT---GDGVA-KAPAWNSNKDLHA 348
           SQQK++E SS QL Q KE E+DPLI+ E G    GD V  KAPAW+SNKDLHA
Sbjct: 301 SQQKSNEVSSAQLSQAKENESDPLISVENGAAILGDSVGPKAPAWSSNKDLHA 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434347|ref|XP_002267594.1| PREDICTED: uncharacterized membrane protein At1g06890 [Vitis vinifera] gi|297745769|emb|CBI15825.3| unnamed protein product [Vitis vinifera]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 305/352 (86%), Positives = 320/352 (90%), Gaps = 4/352 (1%)

Query: 1   MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
           M E Q+FQLGTVGALSLSV+SSVSIVICNKALISSLGF+FATTLTSWHLLVTFCSLHVAL
Sbjct: 1   MGESQRFQLGTVGALSLSVVSSVSIVICNKALISSLGFSFATTLTSWHLLVTFCSLHVAL 60

Query: 61  WMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120
           WMKLFEHKPFD RAVMGFG+LNG SIGLLNLSLGFNSVGFYQMTKLAIIPCT+LLETLFF
Sbjct: 61  WMKLFEHKPFDARAVMGFGILNGTSIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFF 120

Query: 121 RKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKV 180
           RK+FSR+IQLSL ILL+GVGIATVTDLQLN LGSVLSLLAV+TTC+AQIMTN IQKKFKV
Sbjct: 121 RKRFSRSIQLSLSILLLGVGIATVTDLQLNALGSVLSLLAVITTCIAQIMTNNIQKKFKV 180

Query: 181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
           SSTQLLYQSCPYQA+TLFI GPFLD LLT +NVFAFKYT  VL FIVLSCLISVSVNFST
Sbjct: 181 SSTQLLYQSCPYQAMTLFIAGPFLDWLLTKQNVFAFKYTSEVLVFIVLSCLISVSVNFST 240

Query: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
           FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIA+IGMVLYSY CS E
Sbjct: 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIALIGMVLYSYYCSRE 300

Query: 301 SQQKASETSSQLPQVKEGETDPLINAEKGTG---DG-VAKAPAWNSNKDLHA 348
            QQK SE S+Q+ Q KE ETDPLI  E G G   D  VAK PAWNSNKDL A
Sbjct: 301 GQQKPSEVSAQMAQAKESETDPLIGVENGAGILTDAVVAKVPAWNSNKDLQA 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2033097	357	AT1G06890 [Arabidopsis thalian	1.0	0.974	0.717	2.5e-129
TAIR|locus:2064316	353	AT2G30460 "AT2G30460" [Arabido	1.0	0.985	0.694	7.8e-126
TAIR|locus:504955965	342	AT2G28315 [Arabidopsis thalian	0.933	0.950	0.551	6.7e-88
TAIR|locus:2199557	348	AT1G21070 [Arabidopsis thalian	0.922	0.922	0.308	3.7e-39
TAIR|locus:2030076	347	AT1G76670 [Arabidopsis thalian	0.899	0.902	0.316	4.8e-39
TAIR|locus:2118514	335	AT4G09810 [Arabidopsis thalian	0.833	0.865	0.341	3.4e-38
TAIR|locus:2162271	350	AT5G42420 [Arabidopsis thalian	0.859	0.854	0.306	1.1e-37
TAIR|locus:2122467	337	NST-K1 "nucleotide sugar trans	0.775	0.801	0.328	2.4e-37
TAIR|locus:2009076	335	AT1G34020 [Arabidopsis thalian	0.770	0.8	0.329	9.2e-36
ZFIN|ZDB-GENE-041210-186	317	slc35e3 "solute carrier family	0.810	0.889	0.280	9.1e-29

TAIR|locus:2033097 AT1G06890 [Arabidopsis thaliana (taxid:3702)]

 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 256/357 (71%), Positives = 272/357 (76%)

Query:     1 MSEGQKFQLGTVGAXXXXXXXXXXXXXCNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
             MSEGQKFQLGT+GA             CNKALIS+LGFTFATTLTSWHLLVTFCSLHVAL
Sbjct:     1 MSEGQKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVAL 60

Query:    61 WMKLFEHKPFDPRAVMGFXXXXXXXXXXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFF 120
             WMK+FEHKPFDPRAVMGF                     FYQMTKLAIIPCT+LLETLFF
Sbjct:    61 WMKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFF 120

Query:   121 RKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKV 180
             RKKFSR IQ S          ATVTD                TTCVAQIMTNTIQKKFKV
Sbjct:   121 RKKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKV 180

Query:   181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
             SSTQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFST
Sbjct:   181 SSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFST 240

Query:   241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
             FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL DPF WRNILGIL+AVIGMV+YSY CS+E
Sbjct:   241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFDWRNILGILVAVIGMVVYSYYCSIE 300

Query:   301 SQQKASETSSQLPQVKEGETDPLINAEKGTG---DG---VAK---APAWNSNKDLHA 348
             +QQKASETS+QLPQ+KE E DPLI AE G+G   DG   V +   AP WNSNKD  A
Sbjct:   301 TQQKASETSTQLPQMKESEKDPLIAAENGSGVLSDGGGGVQQKTVAPVWNSNKDFQA 357

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2064316 AT2G30460 "AT2G30460" [Arabidopsis thaliana (taxid:3702)]

 Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
 Identities = 245/353 (69%), Positives = 268/353 (75%)

Query:     1 MSEGQKFQLGTVGAXXXXXXXXXXXXXCNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
             MS+ QKFQLGT+GA             CNKALIS+LGFTFATTLTSWHLLVTFCSLHVAL
Sbjct:     1 MSDAQKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVAL 60

Query:    61 WMKLFEHKPFDPRAVMGFXXXXXXXXXXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFF 120
             WMK FEHKPFDPRAV+GF                     FYQMTKLAIIPCT++LET+FF
Sbjct:    61 WMKFFEHKPFDPRAVLGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVVLETIFF 120

Query:   121 RKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKV 180
             RK FSR IQ S          ATVTD                TTCVAQIMTNTIQKK+KV
Sbjct:   121 RKMFSRKIQFSLVILLLGVGIATVTDLQLNMLGSVLSLLAVITTCVAQIMTNTIQKKYKV 180

Query:   181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
             SSTQLLYQSCPYQA+TLF+ GPFLDGLLTN+NVFAFKYT  V+FFIVLSCLISVSVNFST
Sbjct:   181 SSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFST 240

Query:   241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
             FLVIGKTSPVTYQVLGHLKTCLVLAFGY+LL D FSWRNILGIL+AVIGMVLYSY C+LE
Sbjct:   241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYLLLKDAFSWRNILGILVAVIGMVLYSYYCTLE 300

Query:   301 SQQKASETSSQLPQVKEGETDPLINAEKGTG----DGVAKA-PAWNSNKDLHA 348
             +QQKA+ETS+QLPQ+ E E DPL++AE G+G    +GV K  P WNSNKD  A
Sbjct:   301 TQQKATETSTQLPQMDENEKDPLVSAENGSGLISDNGVQKQDPVWNSNKDFQA 353

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:504955965 AT2G28315 [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 181/328 (55%), Positives = 218/328 (66%)

Query:     1 MSEGQKFQLGTVGAXXXXXXXXXXXXXCNKALISSLGFTFATTLTSWHLLVTFCSLHVAL 60
             M E +  Q+G +GA             CNKAL+++LGF FATTLTSWHL+VT+C+LHVA 
Sbjct:     1 MGEMKSMQMGVIGALFLSVASSVSIVICNKALMTNLGFPFATTLTSWHLMVTYCTLHVAY 60

Query:    61 WMKLFEHKPFDPRAVMGFXXXXXXXXXXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFF 120
              +  FE+KP D R V+ F                     FYQMTKLAIIP T+LLETLF 
Sbjct:    61 KLNFFENKPIDMRTVVLFGLLNGISIGLLNLSLGFNSIGFYQMTKLAIIPFTVLLETLFL 120

Query:   121 RKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKV 180
              KKFS+ I+ S          A++TD                TTCV QI+TNTIQK+  V
Sbjct:   121 NKKFSQKIKFSLFLLLVGVGIASITDLQLNFVGSVLSLLAIATTCVGQILTNTIQKRLNV 180

Query:   181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
             +STQLLYQS P+QA  LF+ GPF+D  LT+ NVF+F Y+P V+ FI LSCLI+VSVNFST
Sbjct:   181 TSTQLLYQSAPFQAAILFVSGPFVDKYLTSLNVFSFHYSPIVVGFITLSCLIAVSVNFST 240

Query:   241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
             FLVIGKTSPVTYQVLGHLKTCLVLAFGY LLHDPF+ RNI GILIAV+GM+LYSY CS+ 
Sbjct:   241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYTLLHDPFTPRNIAGILIAVLGMLLYSYFCSVA 300

Query:   301 SQQK-ASETSSQLPQVKEGETDPLINAE 327
             S+ K AS  S+ L   K+ +T PL+  E
Sbjct:   301 SKSKQASSDSTFLG--KDRDTTPLLGQE 326

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2199557 AT1G21070 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 102/331 (30%), Positives = 163/331 (49%)

Query:     2 SEGQKFQLGTVGAXXXXXXXXXXXXXCNKALISS--LGFTFATTLTSWHLLVTFCSLHV- 58
             +E +   +  VGA              NK L+SS   GF+FATTLT +H  +T     V 
Sbjct:     6 NEKKPSAVSDVGAWAMNVTSSVGIIMANKQLMSSSGFGFSFATTLTGFHFALTALVGMVS 65

Query:    59 -ALWMKLFEHKPFDPRAVMGFXXXXXXXXXXXXXXXXXXXXXFYQMTKLAIIPCTILLET 117
              A  +   +H P     ++ F                     FYQ++KL++IP   ++E 
Sbjct:    66 NATGLSASKHVPL--WELLWFSLVANISIAAMNFSLMLNSVGFYQISKLSMIPVVCVMEW 123

Query:   118 LFFRKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXXXXTTCVAQIMTNTIQKK 177
             +   K +SR ++ S           TVTD                +T + QI   ++QKK
Sbjct:   124 VLHSKHYSREVKASVMVVVVGVGICTVTDVKVNAKGFICACTAVFSTSLQQISIGSLQKK 183

Query:   178 FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVN 237
             + + S +LL ++ P QA++L I GPF+D  L+ + +  +K T   +  I+LSC ++V  N
Sbjct:   184 YSIGSFELLSKTAPIQAISLLIFGPFVDYFLSGRFISTYKMTYSAMLCILLSCALAVFCN 243

Query:   238 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 297
              S +L IG+ S  ++QVLGH+KT  VL  G+++     +++NI G+++AV+GMV+YS+  
Sbjct:   244 ISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLIFDSEMTFKNIAGMVLAVVGMVIYSWAV 303

Query:   298 SLESQQKASETSSQLPQVKEGETDPLINAEK 328
              LE Q+K    S  +P  K   T+  I   K
Sbjct:   304 ELEKQRK----SKVIPHGKHSMTEDEIKLLK 330

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2030076 AT1G76670 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 101/319 (31%), Positives = 156/319 (48%)

Query:     5 QKFQLGTVGAXXXXXXXXXXXXXCNKALISS--LGFTFATTLTSWHLLVTFCSLHV--AL 60
             +K  +  VGA              NK L+SS   GF FATTLT +H   T     V  A 
Sbjct:     8 KKSAVSDVGAWAMNVISSVGIIMANKQLMSSSGFGFGFATTLTGFHFAFTALVGMVSNAT 67

Query:    61 WMKLFEHKPFDPRAVMGFXXXXXXXXXXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFF 120
              +   +H P     ++ F                     FYQ++KL++IP   +LE +  
Sbjct:    68 GLSASKHVPL--WELLWFSIVANISIAAMNFSLMLNSVGFYQISKLSMIPVVCVLEWILH 125

Query:   121 RKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKV 180
              K + + ++ S           TVTD                +T + QI   ++QKK+ V
Sbjct:   126 SKHYCKEVKASVMVVVIGVGICTVTDVKVNAKGFICACTAVFSTSLQQISIGSLQKKYSV 185

Query:   181 SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST 240
              S +LL ++ P QA++L I GPF+D LL+ K +  ++ T   +F I+LSC ++V  N S 
Sbjct:   186 GSFELLSKTAPIQAISLLICGPFVDYLLSGKFISTYQMTYGAIFCILLSCALAVFCNISQ 245

Query:   241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300
             +L IG+ S  ++QVLGH+KT  VL  G++L     +++NI G+ IA++GMV+YS+   +E
Sbjct:   246 YLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSEMTFKNIAGMAIAIVGMVIYSWAVDIE 305

Query:   301 SQQKASETSSQLPQVKEGE 319
              Q+ A  T      + E E
Sbjct:   306 KQRNAKSTPHGKHSMTEDE 324

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005457 "GDP-fucose transmembrane transporter activity" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

GO:0005460 "UDP-glucose transmembrane transporter activity" evidence=IDA

GO:0015783 "GDP-fucose transport" evidence=IDA

GO:0015786 "UDP-glucose transport" evidence=IDA

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2118514 AT4G09810 [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 101/296 (34%), Positives = 149/296 (50%)

Query:    29 NKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFE--HKPFDPRAVMGFXXXXXXXX 86
             NKAL+++ GF+FATTLT  H   T     V   +   +  H PF    ++ F        
Sbjct:    32 NKALMATYGFSFATTLTGLHFATTTLMTLVLRCLGYIQPSHLPFTE--LLKFILFANFSI 89

Query:    87 XXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTD 146
                          FYQ+ KL++IP + LLE +F + ++SR+ +LS           TVTD
Sbjct:    90 VGMNVSLMWNSVGFYQIAKLSMIPVSCLLEVVFDKIRYSRDTKLSIGLVLVGVGVCTVTD 149

Query:   147 XXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDG 206
                             +T + Q   + +Q+K+ +SS  LL  + P QA TL I+GPFLD 
Sbjct:   150 VSVNTKGFVAAFVAVWSTALQQYYVHYLQRKYSLSSFNLLGHTAPAQAATLLIVGPFLDY 209

Query:   207 LLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAF 266
              LT+K V  + Y    + FI LSC I++  N S F+ IG+ + V++QVLGH+KT LVL  
Sbjct:   210 WLTDKRVDMYDYNSVSVMFITLSCTIAIGTNLSQFICIGRFTAVSFQVLGHMKTILVLVM 269

Query:   267 GYVLL-HDPFSWRNILGILIAVIGMVLYSYCCSLES-QQKASETSSQLPQVKEGET 320
             G+     D  +   ILG++IAV+GM+ Y    S    ++K + +     Q K G T
Sbjct:   270 GFFFFDRDGLNLHVILGMIIAVLGMIWYGNASSKPGGKEKKNYSLPTTRQQKLGAT 325

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2162271 AT5G42420 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 97/316 (30%), Positives = 161/316 (50%)

Query:    29 NKALISSLGF--TFATTLTSWHLLVTFCSLHV--ALWMKLFEHKPFDPRAVMGFXXXXXX 84
             NK L+SS GF  +FATTLT +H  +T     V  A      +H P     ++ F      
Sbjct:    33 NKQLMSSSGFAFSFATTLTGFHFALTALVGMVSNATGFSASKHVPM--WELIWFSIVANV 90

Query:    85 XXXXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATV 144
                            FYQ++KL++IP   ++E +   K++SR +++S           TV
Sbjct:    91 SIAAMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHSKRYSREVKISVVVVVVGVGICTV 150

Query:   145 TDXXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFL 204
             TD                ++ + QI+  ++QKK+ + S +LL ++ P QA +L ++GP +
Sbjct:   151 TDVKVNAKGFICACVAIFSSSLQQILIGSLQKKYSIGSFELLSKTAPIQAFSLLVVGPLV 210

Query:   205 DGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVL 264
             D LL+ K +  +  +     FI+LSC ++V  N S +L IG+ S V++QV+GH+KT  +L
Sbjct:   211 DYLLSGKFIMKYNMSSGCFLFILLSCGLAVFCNISQYLCIGRFSAVSFQVIGHMKTVCIL 270

Query:   265 AFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQ----------KASETSSQLPQ 314
               G++L     +++N+ G+++A++GMV+YS+   LE Q           K S T  +   
Sbjct:   271 TLGWLLFDSAMTFKNVAGMIVAIVGMVIYSWAMELEKQSIIAAKALNSVKHSLTEEEFEL 330

Query:   315 VKEG-ETDPLINAEKG 329
             +KEG ET    + E G
Sbjct:   331 LKEGVETTQSKDVELG 346

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2122467 NST-K1 "nucleotide sugar transporter-KT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 89/271 (32%), Positives = 139/271 (51%)

Query:    29 NKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFXXXXXXXXXX 88
             NKAL+++ GF+FATTLT  H   T        W+   +        ++ F          
Sbjct:    37 NKALMATYGFSFATTLTGLHFGTTTLLTTFLTWLGYIQPSQLPWPDLLKFVLFANFSIVG 96

Query:    89 XXXXXXXXXXXFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXX 148
                        FYQ+ KL++IP + LLE +    ++SR+ +LS           TVTD  
Sbjct:    97 MNVSLMWNSVGFYQIAKLSMIPVSCLLEVMLDNVRYSRDTKLSILLVLAGVAVCTVTDVS 156

Query:   149 XXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLL 208
                           +T + Q   + +Q+K+ + S  LL  + P QA +L ++GPFLD  L
Sbjct:   157 VNLNGFLAAAIAVWSTALQQYYVHYLQRKYSLGSFNLLAHTAPVQAASLLLVGPFLDYWL 216

Query:   209 TNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGY 268
             TN+ V A+ ++   LFF++LSC I+V  N S F+ IG+ + V++QVLGH+KT LVL  G+
Sbjct:   217 TNQRVDAYNFSFVSLFFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGF 276

Query:   269 VLL-HDPFSWRNILGILIAVIGMVLYSYCCS 298
                  +  + + +LG+LIA++GM+ Y    S
Sbjct:   277 TFFGKEGLNLQVVLGMLIAILGMIWYGNASS 307

GO:0005886 "plasma membrane" evidence=ISM

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IDA

GO:0015780 "nucleotide-sugar transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2009076 AT1G34020 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 90/273 (32%), Positives = 139/273 (50%)

Query:    29 NKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFE--HKPFDPRAVMGFXXXXXXXX 86
             NKAL+++ G++FATTLT  H   T     V   +   +  H PF    ++ F        
Sbjct:    32 NKALMATYGYSFATTLTGLHFATTTLMTLVLRCLGYIQPSHLPFTE--LLRFILFANFSI 89

Query:    87 XXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTD 146
                          FYQ+ KL++IP + LLE +F + ++SR+ +LS           TVTD
Sbjct:    90 VGMNVSLMWNSVGFYQIAKLSMIPVSCLLEMVFDKIRYSRDTKLSIGLVLVGVGVCTVTD 149

Query:   147 XXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDG 206
                             +T + Q   + +Q+K+ ++S  LL  + P QA TL ++GPFLD 
Sbjct:   150 VSVNTKGFVAAFVAVWSTALQQYYVHYLQRKYSLNSFNLLGHTAPAQAATLLVVGPFLDY 209

Query:   207 LLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAF 266
              LT K V  + Y    + FI LSC I++  N S F+ IG+ + V++QVLGH+KT LVL  
Sbjct:   210 WLTEKRVDMYDYNLVSVLFITLSCTIAIGTNLSQFICIGRFTAVSFQVLGHMKTILVLIM 269

Query:   267 GYVLL-HDPFSWRNILGILIAVIGMVLYSYCCS 298
             G+     +  +   ++G++IAV+GM+ Y    S
Sbjct:   270 GFFFFGREGLNLHVVVGMIIAVLGMIWYGNASS 302

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

ZFIN|ZDB-GENE-041210-186 slc35e3 "solute carrier family 35, member E3" [Danio rerio (taxid:7955)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 80/285 (28%), Positives = 127/285 (44%)

Query:    29 NKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFXXXXXXXXXX 88
             NK +    GF    TLT  H ++T+  L +   M +F  K   P  ++            
Sbjct:    36 NKWIYVHYGFP-NMTLTLIHFVMTWLGLFICQKMDIFAPKSLRPSKILLLALSFCGFVVF 94

Query:    89 XXXXXXXXXXXFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXX 148
                         YQ+ K+   P  I ++T+++RK FS  I+L+           +  D  
Sbjct:    95 TNLSLQSNTIGTYQLAKVMTTPVIIAIQTMYYRKTFSTKIKLTLVPITLGVILNSYYDVR 154

Query:   149 XXXXXXXXXXXXXXTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLL 208
                            T + Q+     Q + +V+S QLLY   P  +  L ++ PF + L 
Sbjct:   155 FNLMGMIFATLGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAFLLVLVPFFEPLT 214

Query:   209 TNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGY 268
              +  +F   ++   LF ++LS +I+  VN S + +IG TSPVTY + GH K C+ L  GY
Sbjct:   215 GDGGIFG-PWSFLALFMVLLSGVIAFLVNLSIYWIIGNTSPVTYNMFGHFKFCITLLGGY 273

Query:   269 VLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLP 313
             VL  DP S    LGIL  + G++ Y++   L  Q++     +Q P
Sbjct:   274 VLFQDPLSLNQGLGILCTLTGILAYTHF-KLAEQEEGKSRLTQRP 317

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6PGC7	S35E3_MOUSE	No assigned EC number	0.3122	0.8563	0.9520	yes	no
A4IFK2	S35E3_BOVIN	No assigned EC number	0.3255	0.8563	0.9520	yes	no
Q1JQ66	S35E3_DANRE	No assigned EC number	0.3311	0.8591	0.9552	yes	no
Q7Z769	S35E3_HUMAN	No assigned EC number	0.3222	0.8563	0.9520	yes	no
Q8RXL8	Y1689_ARATH	No assigned EC number	0.8655	1.0	0.9747	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	5e-31
PTZ00343	350	PTZ00343, PTZ00343, triose or hexose phosphate/pho	1e-08
pfam08449	303	pfam08449, UAA, UAA transporter family	2e-08
TIGR00817	302	TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate	3e-08
COG5070	309	COG5070, VRG4, Nucleotide-sugar transporter [Carbo	2e-07
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	1e-05
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	3e-05

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score =  114 bits (287), Expect = 5e-31
 Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 6/149 (4%)

Query: 153 GSVLSLLAVLTTCVAQIMTNTIQKK---FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLT 209
           G +L+L A     +  I++  + KK    K++  +LLY   P   + L     F +G   
Sbjct: 1   GFILALAASALFALRLILSQKLLKKKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFKL 60

Query: 210 NKNV---FAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAF 266
            K +   F    T   +  ++LS +++   N S F ++G+TSP+T  V G +K  +V+  
Sbjct: 61  GKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVL 120

Query: 267 GYVLLHDPFSWRNILGILIAVIGMVLYSY 295
             ++  DP ++ NILG+ IA++G+VLYSY
Sbjct: 121 SVIIFGDPVTFLNILGLAIAILGVVLYSY 149

This family includes transporters with a specificity for triose phosphate. Length = 149

>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 11/215 (5%)

Query: 91  LSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN 150
           +S+G  +V F  + K A    T LL  LF ++  +    LSL+ ++ GV +A+V +L   
Sbjct: 133 ISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFT 192

Query: 151 VLGSVLSLLAVLTT-----CVAQIMTNTIQKKFKVSSTQL-----LYQSCPYQALTLFII 200
            L    ++L+ L +        + M N  +    ++++ +     L  S     L LF  
Sbjct: 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFE 252

Query: 201 GPFLDGLLTNKNVFAFKYTPY-VLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLK 259
           G     + TN       YT   ++F I  S +     N   F  +GK + VT+ V   LK
Sbjct: 253 GKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLK 312

Query: 260 TCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294
             +++    ++     +    LG+ +A++G +LYS
Sbjct: 313 RVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347

Length = 350

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 12/259 (4%)

Query: 49  LLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLA- 107
           L ++   L   L  K  + +    +  +       +S  L N +L + S   + + K   
Sbjct: 41  LFISLVGLLYLLLFKKLKPRKIPLKTYVLIVATFFLSSVLNNEALKYISYPTHVIFKSCK 100

Query: 108 IIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV---TDLQLNVLGSVLSLLAVLTT 164
           +IP  ++L  L + K++S    LS +++ +GV I T+    D + + L +    + +   
Sbjct: 101 LIP-VMILGILIYGKRYSSLQYLSALLITLGVIIFTLASAKDSKNSKLTTFSDNVGIALL 159

Query: 165 CVAQIM---TNTIQ----KKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFK 217
             A +M   T   Q    KK+   S ++++ S         +    +   L         
Sbjct: 160 FGALLMDALTGNTQEKLYKKYGKHSKEMMFYSHLLSLPFFLLGLLDIRTGLLFSAESFCL 219

Query: 218 YTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSW 277
             P VLF+++L+ L      F  F +I +   +T  ++  L+  + L    +L  +P + 
Sbjct: 220 RHPSVLFYLLLNSLTQYVGQFFVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTL 279

Query: 278 RNILGILIAVIGMVLYSYC 296
           +  LG L+  +G+ LY+Y 
Sbjct: 280 QQWLGTLLVFLGIFLYAYL 298

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 17/218 (7%)

Query: 90  NLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQL 149
           N+SL   +V F    K      +++L   F  ++F   + LSL+ ++ GV +A+ T+L  
Sbjct: 83  NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSF 142

Query: 150 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALT-LFIIGPFLDGLL 208
           N  G + ++++ +T     I +        +  T L      Y ++  LF++ P     +
Sbjct: 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLY----AYISIMSLFLLSPP--AFI 196

Query: 209 TNKNVFAFKYTPYVLFFIVLSCLISVSV----------NFSTFLVIGKTSPVTYQVLGHL 258
           T    F        +  + ++ + +VS+              F+++G+ SP+T+ V   +
Sbjct: 197 TEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCM 256

Query: 259 KTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296
           K  +V+    +      S + + G  IA+ G+ LYS  
Sbjct: 257 KRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294

The 6-8 TMS Triose-phosphate Transporter (TPT) Family (TC 2.A.7.9)Functionally characterized members of the TPT family are derived from the inner envelope membranes of chloroplasts and nongreen plastids of plants. However,homologues are also present in yeast. Saccharomyces cerevisiae has three functionally uncharacterized TPT paralogues encoded within its genome. Under normal physiologicalconditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi).Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into thecytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by achannel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrateconcentrations. Nongreen plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated atcarbon atom 2, particularly phosphenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be asubstrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substratespecificities overlap [Hypothetical proteins, Conserved]. Length = 302

>gnl|CDD|227402 COG5070, VRG4, Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 11/292 (3%)

Query: 21  SSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGV 80
           SS+ + + NK ++S+LGF     L +   LV    L +  +++L E +    +       
Sbjct: 17  SSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISF 76

Query: 81  LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVG 140
           L  + I   + SL + +V  Y + K   I      E LFF  + +    LS +++++   
Sbjct: 77  LLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSV 136

Query: 141 IATVTDLQ--------LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPY 192
           +AT  D Q        LN     +    + +     IM   I+         + Y +   
Sbjct: 137 VATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNL-- 194

Query: 193 QALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTY 252
            +L + +   FL    +  N+ A   +   L  + +S L SV +++ +   +  TS  TY
Sbjct: 195 LSLPILLSFSFLFEDWSPGNL-ANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTY 253

Query: 253 QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQK 304
            ++G L    +   G V    P ++ +I  IL+  +   +Y+   S + Q +
Sbjct: 254 SMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305

Length = 309

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 39/202 (19%), Positives = 64/202 (31%), Gaps = 16/202 (7%)

Query: 101 YQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA---TVTDLQLNVLGSVLS 157
            Q+T+L I   T L+           +   SL +L +GV I      +   L     V+ 
Sbjct: 28  KQVTQLKI-LSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVG 86

Query: 158 LLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFL------DGLLTNK 211
           L AVL+  ++        +K       + +       L LF +          DG L + 
Sbjct: 87  LSAVLSALLSSGFAGVYFEKILKDGDTMFWSR--NLQLPLFGLFSTFSVLLWSDGTLISN 144

Query: 212 NVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL 271
             F   Y   V    +L+    + +      V+      T   +  L   L       L 
Sbjct: 145 FGFFIGYPTAVWIVGLLNVGGGLCIG----GVVRYADNTTKSFVTALSIILSTLASVRLF 200

Query: 272 HDPFSWRNILGILIAVIGMVLY 293
               S    LG ++  +   LY
Sbjct: 201 DAKISSTFYLGAILVFLATFLY 222

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 50/288 (17%), Positives = 100/288 (34%), Gaps = 8/288 (2%)

Query: 9   LGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHK 68
           LG +  L   ++  +S +    A+ S   F FA  L      +    L +     L    
Sbjct: 7   LGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPAL 66

Query: 69  PFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFRKKFSRN 127
                 ++   +   +   LL L+L + S      +  L  +   +L   L   ++ S  
Sbjct: 67  RPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL 126

Query: 128 IQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLY 187
             L +++ L GV +  +      +L  +  LLA+    +  + T  +++  ++    L  
Sbjct: 127 QILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLSRLGPVTLAL 186

Query: 188 QSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKT 247
                  L   ++   L  L       A   +   L  + L    +       +  +   
Sbjct: 187 -------LLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLL 239

Query: 248 SPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 295
                 +L  L+       G +LL +P S   +LG  + V+G++L S 
Sbjct: 240 GASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	100.0
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	100.0
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	100.0
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.97
PLN00411	358	nodulin MtN21 family protein; Provisional	99.97
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.97
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.96
PRK11689	295	aromatic amino acid exporter; Provisional	99.96
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.96
PRK15430	296	putative chloramphenical resistance permease RarD;	99.95
PRK11272	292	putative DMT superfamily transporter inner membran	99.95
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.95
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.95
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.95
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.95
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.94
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.89
KOG1581	327	consensus UDP-galactose transporter related protei	99.87
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.87
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.87
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.87
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.86
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.85
KOG1580	337	consensus UDP-galactose transporter related protei	99.84
COG2962	293	RarD Predicted permeases [General function predict	99.84
KOG2765	416	consensus Predicted membrane protein [Function unk	99.82
KOG1582	367	consensus UDP-galactose transporter related protei	99.82
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.81
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.81
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.79
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.79
KOG2766	336	consensus Predicted membrane protein [Function unk	99.74
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.71
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.37
COG2510	140	Predicted membrane protein [Function unknown]	99.23
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.14
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.11
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.11
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.09
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.07
COG2510	140	Predicted membrane protein [Function unknown]	98.98
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.91
PRK15430	296	putative chloramphenical resistance permease RarD;	98.84
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.77
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.75
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.67
PLN00411	358	nodulin MtN21 family protein; Provisional	98.56
COG2962	293	RarD Predicted permeases [General function predict	98.35
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.35
PRK13499	345	rhamnose-proton symporter; Provisional	98.34
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.23
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.21
PRK11272	292	putative DMT superfamily transporter inner membran	98.2
PRK11689	295	aromatic amino acid exporter; Provisional	98.18
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.16
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.12
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.07
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.02
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.98
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.92
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.86
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.85
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.83
COG2076	106	EmrE Membrane transporters of cations and cationic	97.82
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.82
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.81
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.8
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.75
PRK11431	105	multidrug efflux system protein; Provisional	97.71
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.68
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.65
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.62
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.61
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	97.61
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.46
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.45
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.42
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.36
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.25
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.23
PRK11431	105	multidrug efflux system protein; Provisional	97.15
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.08
COG2076	106	EmrE Membrane transporters of cations and cationic	97.05
PRK13499	345	rhamnose-proton symporter; Provisional	96.98
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.66
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.56
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.42
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.35
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.35
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.25
KOG1581	327	consensus UDP-galactose transporter related protei	95.76
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.7
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.47
KOG2765	416	consensus Predicted membrane protein [Function unk	94.64
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	94.46
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	94.29
KOG1580	337	consensus UDP-galactose transporter related protei	93.31
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	93.06
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	92.98
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	92.47
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	92.15
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	89.57
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	89.13
PF05297	381	Herpes_LMP1: Herpesvirus latent membrane protein 1	88.31
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	87.76
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	86.76
PRK02237	109	hypothetical protein; Provisional	85.85
KOG2922	335	consensus Uncharacterized conserved protein [Funct	85.06
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	83.71

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=100.00  E-value=5.7e-36  Score=270.61  Aligned_cols=287  Identities=19%  Similarity=0.193  Sum_probs=234.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcc---ccccCCCCcchhHHHHHHHHHHH
Q 018987           10 GTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMK---LFEHKPFDPRAVMGFGVLNGISI   86 (348)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   86 (348)
                      ..+...++|++.+++.++.||++++  ++++|+.+++.|+.++.+.+.+....+   +.+.++.+++.+.+.|++++++.
T Consensus         2 ~~~~~~~~w~~~~~~~~~~NK~~l~--~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   79 (302)
T TIGR00817         2 QTGLLFGLWYFLNVYFNIYNKKLLN--VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGH   79 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3567788999999999999999998  588999999999999988776653222   22233446677888899988999


Q ss_pred             hhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHHHHHHHHHHH
Q 018987           87 GLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCV  166 (348)
Q Consensus        87 ~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~  166 (348)
                      .+.|.+++|++++.+++++++.|+++++++++++|||++++++.+++++++|+.+....+.+.+..|++++++++++|++
T Consensus        80 ~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~  159 (302)
T TIGR00817        80 VTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVS  159 (302)
T ss_pred             HHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987766667778899999999999999


Q ss_pred             HHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhccccccccc-cc--ccC-chhHHHHHHHHH-HHHHHHHHHH
Q 018987          167 AQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVF-AF--KYT-PYVLFFIVLSCL-ISVSVNFSTF  241 (348)
Q Consensus       167 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~~~~-~~~~~~~~~~  241 (348)
                      |.++.||..++++.|+.+.+.|+...+.+.++|.....++.......+ ..  ... ...+...+..+. +....+...+
T Consensus       160 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (302)
T TIGR00817       160 RNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAF  239 (302)
T ss_pred             HHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988755689999999999999988888876655422111000 00  011 112222333333 3334455667


Q ss_pred             hhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018987          242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  298 (348)
Q Consensus       242 ~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~  298 (348)
                      .++++++|++.++.++++|+++++.|++++||++|+.+++|.++++.|+.+|+..|.
T Consensus       240 ~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~  296 (302)
T TIGR00817       240 MLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA  296 (302)
T ss_pred             HHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999999999987543

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=100.00  E-value=8.6e-34  Score=260.08  Aligned_cols=287  Identities=19%  Similarity=0.217  Sum_probs=239.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccC-----CCCcchhHHHHHHH
Q 018987            8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHK-----PFDPRAVMGFGVLN   82 (348)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~   82 (348)
                      .+..+...+.|+..++..++.||++++  .+|+|++++++|++++++++.+.+..+.++.+     +.++++.++.|+++
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~  124 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCH  124 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            677788899999999999999999999  68899999999999998876655443322211     22456788889988


Q ss_pred             HHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHHHHHHH
Q 018987           83 GISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVL  162 (348)
Q Consensus        83 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~  162 (348)
                      .......+.++++++++.+++++++.|+++++++++++|||++++++.+++++++|+.+.+..+.+++..|++++++|++
T Consensus       125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~  204 (350)
T PTZ00343        125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNL  204 (350)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHH
Confidence            77777788999999999999999999999999999999999999999999999999999988888888899999999999


Q ss_pred             HHHHHHHHHHHHhhhc-----CCCHHHHHHhhhHHHHHHHHHHHHHhhcccccc------cccccccCchhHHHHHHHHH
Q 018987          163 TTCVAQIMTNTIQKKF-----KVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNK------NVFAFKYTPYVLFFIVLSCL  231 (348)
Q Consensus       163 ~~a~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  231 (348)
                      ++++|+++.|+..+++     +.++.+...+....+++.++|..+..|+.....      ...........+..++.+++
T Consensus       205 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l  284 (350)
T PTZ00343        205 GSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGV  284 (350)
T ss_pred             HHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence            9999999999988754     366777777778889999888877665421100      00001111233445666777


Q ss_pred             HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      ..++++...+.++++++|.++++.++++|++++++|++++||++|+.+++|.++++.|+.+|+..
T Consensus       285 ~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        285 WYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            77788888889999999999999999999999999999999999999999999999999999875

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=100.00  E-value=2e-34  Score=254.20  Aligned_cols=296  Identities=31%  Similarity=0.485  Sum_probs=259.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCC----CCcchhHHHHH
Q 018987            5 QKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKP----FDPRAVMGFGV   80 (348)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~   80 (348)
                      ++.......+...|.+.+++..+.||+++++++|++|++++..+...+.+........+..+.++    .+++..+++|+
T Consensus        12 ~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~   91 (316)
T KOG1441|consen   12 LKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGL   91 (316)
T ss_pred             cchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Confidence            34556666789999999999999999999999999999999998888888888877766554443    57789999999


Q ss_pred             HHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHHHHH
Q 018987           81 LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLA  160 (348)
Q Consensus        81 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s  160 (348)
                      .++++.++.|.++.++|++.+++++.++|+++.++++++.+|+++...+.++..+..|+.+++..|.++|+.|.+.++++
T Consensus        92 ~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s  171 (316)
T KOG1441|consen   92 VFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMIS  171 (316)
T ss_pred             HHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh--hhcCCCHHHHHHhhhHHHHHHHH-HHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHH
Q 018987          161 VLTTCVAQIMTNTIQ--KKFKVSSTQLLYQSCPYQALTLF-IIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVN  237 (348)
Q Consensus       161 ~~~~a~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (348)
                      .+..++++++.++..  |+++.|+.+++.|+.+++...++ |.....++... .......++...+..+ +..++++.+|
T Consensus       172 ~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~sv~~f~~N  249 (316)
T KOG1441|consen  172 NLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFLILL-LNSVLAFLLN  249 (316)
T ss_pred             HHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhHHHH-HHHHHHHHHH
Confidence            999999999999998  46789999999999999999988 66655554433 1011123333344444 4449999999


Q ss_pred             HHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccc
Q 018987          238 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQ  302 (348)
Q Consensus       238 ~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~  302 (348)
                      ...+.++.+++|++.++.+.+|.++.++.|+++|+++.|+.+..|+++.++|+.+|++.|.++++
T Consensus       250 ls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  250 LSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             HHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999988775543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-29  Score=218.13  Aligned_cols=300  Identities=23%  Similarity=0.300  Sum_probs=261.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCc---chhHHHHHH
Q 018987            5 QKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDP---RAVMGFGVL   81 (348)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~   81 (348)
                      ++.........+.|+.++..+.+.||+++++++||...++..+|++.+.+.+....+.+-.+.++.++   +++++++++
T Consensus         7 ~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~l   86 (314)
T KOG1444|consen    7 SKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLL   86 (314)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHH
Confidence            34455567889999999999999999999988888888888899999999999988877666665554   689999999


Q ss_pred             HHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHHHHHH
Q 018987           82 NGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAV  161 (348)
Q Consensus        82 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~  161 (348)
                      +.++......+++|+++++++++++..|+++++...+++|.|++...|.++....+|.......|.+++..|+.+.+...
T Consensus        87 f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~  166 (314)
T KOG1444|consen   87 FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANC  166 (314)
T ss_pred             HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHH
Q 018987          162 LTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF  241 (348)
Q Consensus       162 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (348)
                      ++.+.+.++.|+..+..+.+.+.+++|..+...+.+.....+.+++.......+.......+..+.++|+++++.++..+
T Consensus       167 ~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~  246 (314)
T KOG1444|consen  167 LTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSF  246 (314)
T ss_pred             HHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888899999999999999888877776666544111222223345677889999999999999999


Q ss_pred             hhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccccc
Q 018987          242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQK  304 (348)
Q Consensus       242 ~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~~  304 (348)
                      ++.+.+++++.++++......+.+...++.|++.++..++|..+-+.|.++|++.+.++++.+
T Consensus       247 ~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~  309 (314)
T KOG1444|consen  247 LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP  309 (314)
T ss_pred             HHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence            999999999999999666666667777777889999999999999999999999876654433

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.97  E-value=8.9e-29  Score=226.02  Aligned_cols=287  Identities=14%  Similarity=0.202  Sum_probs=213.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccc--cccCCCCc---chhHHHHHHH
Q 018987            8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKL--FEHKPFDP---RAVMGFGVLN   82 (348)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~--~~~~~~~~---~~~~~~~~~~   82 (348)
                      +.-..+++++-=+...++..+.|..++. +.+ |..+.++|+.++.+++.++.+.++  ++.++.++   ..+...+++.
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            4444556666667777778888998864 666 888999999999998887754332  22233334   3445556555


Q ss_pred             HHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHh------hccccchhhHHHHHHHhhhhheeecc-cc--------
Q 018987           83 GISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLF------FRKKFSRNIQLSLVILLVGVGIATVT-DL--------  147 (348)
Q Consensus        83 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~------l~e~~s~~~~~~~~l~~~G~~l~~~~-~~--------  147 (348)
                      .++..+.+.+++|++++.+.++.++.|++++++++++      +|||.+++++.+++++++|+.++... +.        
T Consensus        89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~  168 (358)
T PLN00411         89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP  168 (358)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence            5566688999999999999999999999999999999      69999999999999999999986531 10        


Q ss_pred             ---------------ccc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccc
Q 018987          148 ---------------QLN-VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNK  211 (348)
Q Consensus       148 ---------------~~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  211 (348)
                                     ..+ ..|+.+.++++++||+|++++|+..++++ +.....+|++.++.+...+.....++...  
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~~~~--  245 (358)
T PLN00411        169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEKNNP--  245 (358)
T ss_pred             ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHccCCc--
Confidence                           112 45999999999999999999999887542 33455666666666555544444432111  


Q ss_pred             cccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHH
Q 018987          212 NVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMV  291 (348)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~  291 (348)
                      ..+...++... ..+++.++++.+.+...++++++.+|..++++.+++|++++++|++++||++++.+++|.++++.|+.
T Consensus       246 ~~~~~~~~~~~-~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~  324 (358)
T PLN00411        246 SVWIIHFDITL-ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFY  324 (358)
T ss_pred             ccceeccchHH-HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence            11111222232 23444556665666677899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccc
Q 018987          292 LYSYCCSLE  300 (348)
Q Consensus       292 l~~~~~~~~  300 (348)
                      +.++.++++
T Consensus       325 l~~~~~~~~  333 (358)
T PLN00411        325 AVMWGKANE  333 (358)
T ss_pred             HHHhhhhhh
Confidence            987654433

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.97  E-value=1.2e-28  Score=220.57  Aligned_cols=270  Identities=19%  Similarity=0.215  Sum_probs=221.3

Q ss_pred             HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccc-----cCCCCcchhHHHHHHHHHHHhhhhhhhcccchhH
Q 018987           26 VICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFE-----HKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGF  100 (348)
Q Consensus        26 ~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~  100 (348)
                      ...+..+-+. +++.|.+.+++.++.-.++...+...|+.+     ..+.+|++++.+++++...+++.+.|++|++.+.
T Consensus        29 ~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS  107 (334)
T PF06027_consen   29 GTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTS  107 (334)
T ss_pred             HHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhH
Confidence            3455555555 788899999999988777666554333221     2356788889999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecccc---------ccchhHHHHHHHHHHHHHHHHHHH
Q 018987          101 YQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL---------QLNVLGSVLSLLAVLTTCVAQIMT  171 (348)
Q Consensus       101 ~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~v~~  171 (348)
                      ++++.++..+++++++++++|+|+++.|+.|++++++|+.+....|.         +....|++++++++++||+++|+.
T Consensus       108 ~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~  187 (334)
T PF06027_consen  108 VQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLE  187 (334)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998766431         234789999999999999999999


Q ss_pred             HHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcch
Q 018987          172 NTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVT  251 (348)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~  251 (348)
                      |+..|  +.+..+...+..+++.++..+...+.|...    .....|+...+...+..+++-+..+......++..+|+.
T Consensus       188 E~~v~--~~~~~~~lg~~Glfg~ii~~iq~~ile~~~----i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~  261 (334)
T PF06027_consen  188 EKLVK--KAPRVEFLGMLGLFGFIISGIQLAILERSG----IESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATF  261 (334)
T ss_pred             HHhcc--cCCHHHHHHHHHHHHHHHHHHHHHheehhh----hhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccce
Confidence            99998  457888999999999988877766665321    122344555566666666666666666677899999999


Q ss_pred             hhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccc
Q 018987          252 YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQ  302 (348)
Q Consensus       252 ~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~  302 (348)
                      ..+-.....+.++++++++||+++++..++|.+++++|.++|+..+.+.++
T Consensus       262 ~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  262 FNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             eehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence            999888899999999999999999999999999999999999986654433

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.96  E-value=1.9e-27  Score=214.66  Aligned_cols=275  Identities=22%  Similarity=0.282  Sum_probs=232.4

Q ss_pred             HHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHccc-cccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHH
Q 018987           25 IVICNKALISSLGFT-FATTLTSWHLLVTFCSLHVALWMKL-FEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQ  102 (348)
Q Consensus        25 ~~~~~k~~~~~~~f~-~p~~~~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  102 (348)
                      ..++++.+.+..... +|+++++.|++...+...+.....+ .++++.+++++...++++.++..+.|.+++|+|.+..+
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~   94 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQI   94 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            345666676653444 7999999999999998887765554 55667788899999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccc----c------chhHHHHHHHHHHHHHHHHHHHH
Q 018987          103 MTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQ----L------NVLGSVLSLLAVLTTCVAQIMTN  172 (348)
Q Consensus       103 ~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~----~------~~~G~~~~l~s~~~~a~~~v~~~  172 (348)
                      +++++.|+++++++.+++|+|+++++++++++..+|+++....+.+    .      ...|+++.+++.++.|++.+++|
T Consensus        95 ~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe  174 (303)
T PF08449_consen   95 VFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQE  174 (303)
T ss_pred             HHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998764321    1      12399999999999999999999


Q ss_pred             HHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhh-cccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcch
Q 018987          173 TIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLD-GLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVT  251 (348)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~  251 (348)
                      |..++++.+++++++|...++.+..++...... ++......+ ...++..+..++..++++...+...+..+++.+|++
T Consensus       175 ~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f-~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~  253 (303)
T PF08449_consen  175 KLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRF-ISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALT  253 (303)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            999999999999999999999988877666632 111111111 123445667777888888888888889999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccc
Q 018987          252 YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE  300 (348)
Q Consensus       252 ~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~  300 (348)
                      .+++..++.++++++|+++||+++++.+|+|.++++.|..+|...++|+
T Consensus       254 ~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  254 TTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            9999999999999999999999999999999999999999999887765

; GO: 0055085 transmembrane transport

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.96  E-value=5.6e-27  Score=210.92  Aligned_cols=273  Identities=18%  Similarity=0.085  Sum_probs=199.6

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHH
Q 018987            4 GQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNG   83 (348)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (348)
                      +++..+....+.+.|....    ...|...+  ++| |..+.++|+.++.+++.++..  +.+.++.+++..+..++.+.
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~----~~~k~~~~--~~~-P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~   72 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMV----GLIRGVSE--SLG-PVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFV   72 (295)
T ss_pred             CcchhHHHHHHHHHHHHHH----HHHHHHHc--cCC-hHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHH
Confidence            3445555556666666554    46698887  566 999999999999988876532  11222223333344444566


Q ss_pred             HHHhhhhhhhc----ccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecccc-----------c
Q 018987           84 ISIGLLNLSLG----FNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL-----------Q  148 (348)
Q Consensus        84 ~~~~~~~~al~----~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~-----------~  148 (348)
                      .+..+.+.+++    +.++..+.++.++.|+++.+++++++|||++++++.+++++++|+.++..++.           +
T Consensus        73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~  152 (295)
T PRK11689         73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIA  152 (295)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccc
Confidence            66666776665    46777889999999999999999999999999999999999999999765432           1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHH
Q 018987          149 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL  228 (348)
Q Consensus       149 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (348)
                      .+..|++++++++++||.|+++.||..+  +.++.....   ..+.+.+.+.... ++..  .    ...+...+..+.+
T Consensus       153 ~~~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~~~---~~~~~~l~~~~~~-~~~~--~----~~~~~~~~~~l~~  220 (295)
T PRK11689        153 SNPLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITLFF---ILTALALWIKYFL-SPQP--A----MVFSLPAIIKLLL  220 (295)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHH---HHHHHHHHHHHHH-hcCc--c----ccCCHHHHHHHHH
Confidence            2356999999999999999999999876  345554322   2223333322222 2111  1    1122334444555


Q ss_pred             HHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018987          229 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  297 (348)
Q Consensus       229 ~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~  297 (348)
                      .++.+...++.+++++|+.++..++.+.+++|+++++++++++||++++.+++|.++++.|+++....+
T Consensus       221 ~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        221 AAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            666676677888999999999999999999999999999999999999999999999999998876544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.96  E-value=7.8e-26  Score=203.98  Aligned_cols=277  Identities=14%  Similarity=0.161  Sum_probs=196.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHH-HHHH
Q 018987            8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLN-GISI   86 (348)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   86 (348)
                      .+...++.++|.....    ..|...+  +++ |..+.++|+.++.+.+.++.+.     ++.+++..+..+++. ....
T Consensus         6 ~l~~l~~~~~Wg~~~~----~~k~~~~--~~~-p~~~~~~R~~~a~~~l~~~~~~-----~~~~~~~~~~~g~~~~~~~~   73 (299)
T PRK11453          6 GVLALLVVVVWGLNFV----VIKVGLH--NMP-PLMLAGLRFMLVAFPAIFFVAR-----PKVPLNLLLGYGLTISFGQF   73 (299)
T ss_pred             HHHHHHHHHHHhhhHH----HHHHHHh--cCC-HHHHHHHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHHHHH
Confidence            4455566666666665    5587776  566 9999999999987766554321     122344444445533 3344


Q ss_pred             hhhhhhhcc-cchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc---cccchhHHHHHHHHHH
Q 018987           87 GLLNLSLGF-NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD---LQLNVLGSVLSLLAVL  162 (348)
Q Consensus        87 ~~~~~al~~-~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~---~~~~~~G~~~~l~s~~  162 (348)
                      .+.+.++++ .+++.+.++.++.|+++.+++++++|||++++++.+++++++|+.++..++   .+.+..|+.+++++++
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal  153 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAF  153 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHH
Confidence            566778887 688999999999999999999999999999999999999999999876532   2234579999999999


Q ss_pred             HHHHHHHHHHHHhhhcC-CCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHH-HHHHH
Q 018987          163 TTCVAQIMTNTIQKKFK-VSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVS-VNFST  240 (348)
Q Consensus       163 ~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  240 (348)
                      +|+.+.++.||..++.+ .+......+.+..+.+.........+++....... ...+...+..+++.++++.. .+..+
T Consensus       154 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~i~~t~~~~~l~  232 (299)
T PRK11453        154 SWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSL-VTIDMTTILSLMYLAFVATIVGYGIW  232 (299)
T ss_pred             HHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh-ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999865332 22233344444444333332222233221110000 11233345555555555554 44555


Q ss_pred             HhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018987          241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  297 (348)
Q Consensus       241 ~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~  297 (348)
                      ++.+++.++.+.+.+.+++|+++.+++++++||++++.+++|.++++.|+.+..+.+
T Consensus       233 ~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        233 GTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            788999999999999999999999999999999999999999999999998876544

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.95  E-value=7.1e-26  Score=203.86  Aligned_cols=278  Identities=12%  Similarity=0.086  Sum_probs=195.8

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcccc-cc---CCCCcch--
Q 018987            1 MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLF-EH---KPFDPRA--   74 (348)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~-~~---~~~~~~~--   74 (348)
                      |.++.++....+.+.++|.....    ..|.. .  +.+ |..+.++|++++.+++.++...++. +.   +..+++.  
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~----~~k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~   74 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPA----YFKLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF   74 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHH----HHHHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH
Confidence            44455556555566666655554    44764 4  455 9999999999998876665433211 11   1112332  


Q ss_pred             -hHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhH
Q 018987           75 -VMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLG  153 (348)
Q Consensus        75 -~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G  153 (348)
                       ....+++.+.+..+.+++++++|++.+.++.++.|+++++++++++|||+++++|.++++++.|+.+....+.+.    
T Consensus        75 ~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----  150 (296)
T PRK15430         75 MLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----  150 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----
Confidence             223345677789999999999999999999999999999999999999999999999999999999976433222    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHH
Q 018987          154 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS  233 (348)
Q Consensus       154 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (348)
                      ..++++++++||.|.++.||..++...+......|..+.+.....+.   .+..   ....... ....+..++..++.+
T Consensus       151 ~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~-~~~~~~~~~~~g~~t  223 (296)
T PRK15430        151 PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSS---TSHMGQN-PMSLNLLLIAAGIVT  223 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCC---cccccCC-cHHHHHHHHHHHHHH
Confidence            25688899999999999999754222233333344443333322111   1111   0001111 111234445455566


Q ss_pred             HHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018987          234 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  297 (348)
Q Consensus       234 ~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~  297 (348)
                      ...+...++++++.+|...+.+.+++|+++.+++++++||++++.+++|++++++|+.+.....
T Consensus       224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888999999999999999999999999999999999999999999999999888876543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.95  E-value=2.2e-25  Score=200.38  Aligned_cols=271  Identities=13%  Similarity=0.081  Sum_probs=201.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccc-cCCCCcchhHHHHHH-HHHHHhhhhhh
Q 018987           15 LSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFE-HKPFDPRAVMGFGVL-NGISIGLLNLS   92 (348)
Q Consensus        15 ~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~a   92 (348)
                      .++-.+.+.......|...+  +.+ |..++++|+.++.+++.++...++.+ +++.++......|.+ ......+.+.+
T Consensus        13 ~~~~~~iWg~~~~~~K~~~~--~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   89 (292)
T PRK11272         13 LFALYIIWGSTYLVIRIGVE--SWP-PLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVA   89 (292)
T ss_pred             HHHHHHHHhhHHHHHHHHhc--cCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444445567798877  555 99999999999998887765443322 223344555556654 34566777888


Q ss_pred             h-cccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc-ccccchhHHHHHHHHHHHHHHHHHH
Q 018987           93 L-GFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT-DLQLNVLGSVLSLLAVLTTCVAQIM  170 (348)
Q Consensus        93 l-~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~v~  170 (348)
                      . ++++++.+.++.++.|+++++++.+ +|||++++++.++.++++|+.+...+ +.+.+..|++++++++++||.+.++
T Consensus        90 ~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~  168 (292)
T PRK11272         90 EHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW  168 (292)
T ss_pred             HHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            8 9999999999999999999999986 69999999999999999999987643 3345567999999999999999999


Q ss_pred             HHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH-HHHHHHHHHhhhcccCc
Q 018987          171 TNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI-SVSVNFSTFLVIGKTSP  249 (348)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~a  249 (348)
                      .||..++   ++.....+....+.+.+.+.....+...      ....+...+..+++.+++ +...+..+++++++.++
T Consensus       169 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~  239 (292)
T PRK11272        169 SSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERL------TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRP  239 (292)
T ss_pred             HHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCcc------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence            9997542   2344556666667666665544332111      011122334444444444 34456677899999999


Q ss_pred             chhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018987          250 VTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  298 (348)
Q Consensus       250 ~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~  298 (348)
                      ...+.+.+++|+++.+++++++||++|+.+++|.++++.|+.+.+..++
T Consensus       240 ~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        240 ALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998765433

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.2e-29  Score=207.68  Aligned_cols=303  Identities=20%  Similarity=0.231  Sum_probs=260.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHHHHHHHHHccc-----c--ccCCCC---cchh
Q 018987            8 QLGTVGALSLSVISSVSIVICNKALISS--LGFTFATTLTSWHLLVTFCSLHVALWMKL-----F--EHKPFD---PRAV   75 (348)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~--~~f~~p~~~~~~r~~~~~~~l~~~~~~~~-----~--~~~~~~---~~~~   75 (348)
                      .-.+..+...+.+.++.+.+.||++++.  ...+.|.+++++|+++...+++...+...     .  +.-+.+   .+..
T Consensus        26 ~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~v  105 (347)
T KOG1442|consen   26 AKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQV  105 (347)
T ss_pred             hhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhh
Confidence            4445567778889999999999999986  56677999999999999999988755321     1  111222   2567


Q ss_pred             HHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc---cccchh
Q 018987           76 MGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD---LQLNVL  152 (348)
Q Consensus        76 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~---~~~~~~  152 (348)
                      .++++.+.++..+.|..++|++++.+++-+++..+|+++++++++|+|-+..-..+.+++++|.-+-+..+   ...++.
T Consensus       106 lplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~  185 (347)
T KOG1442|consen  106 LPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWI  185 (347)
T ss_pred             cchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchh
Confidence            78899999999999999999999999999999999999999999999999999999999999999988766   456789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018987          153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  232 (348)
Q Consensus       153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (348)
                      |.++++.++++-|+..+++||...+.+..-+.+.+|+...+.+..+|... ..++.+....++..+...+|.++.++|++
T Consensus       186 GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~-lnge~~~v~~~~~l~a~~Fw~~mtLsglf  264 (347)
T KOG1442|consen  186 GVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLI-LNGEFQAVVGFPHLPAIKFWILMTLSGLF  264 (347)
T ss_pred             hhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHH-HcchHHHHcCcccchHHHHHHHHHHHHHH
Confidence            99999999999999999999988877788999999999999988777654 44444444445566678899999999999


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccccccccccCC
Q 018987          233 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQ  311 (348)
Q Consensus       233 ~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~~~~~~~~~  311 (348)
                      ++..++...+-+|.++|++..+.+..+-...++++..+++|..+..-|-|-++++.|...|.+.|.++.+++.++++++
T Consensus       265 gF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~~  343 (347)
T KOG1442|consen  265 GFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSPA  343 (347)
T ss_pred             HHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999887777666555443

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.95  E-value=7.1e-26  Score=192.58  Aligned_cols=284  Identities=25%  Similarity=0.363  Sum_probs=243.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcccc-cc---CCCCcchh----HHHH
Q 018987            8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLF-EH---KPFDPRAV----MGFG   79 (348)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~-~~---~~~~~~~~----~~~~   79 (348)
                      +....+.+.+|+++++++.+.+|+.-.  .|++|++++.+|+++-.++.....+..+. .+   ...+|+..    .+.+
T Consensus        14 rV~~L~lVl~yY~~Si~Ltf~~~~~~~--~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPta   91 (349)
T KOG1443|consen   14 RVLTLALVLLYYFLSIGLTFYFKWLTK--NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTA   91 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhc--CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhh
Confidence            555666678999999999999999888  58899999999999988877776554322 22   23456544    4778


Q ss_pred             HHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHHHH
Q 018987           80 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLL  159 (348)
Q Consensus        80 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~  159 (348)
                      ++.++...+.|++++|++.+.+++.+++.++|+.+++.++--||+++.-...++++.+|+.+..+.+.+++..|.++.++
T Consensus        92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~  171 (349)
T KOG1443|consen   92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLA  171 (349)
T ss_pred             hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHH
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcC---CCHHHHHHhhhHHHHHHHHHHHHHhhccccccc--ccccccC---chhHHHHHHHHH
Q 018987          160 AVLTTCVAQIMTNTIQKKFK---VSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKN--VFAFKYT---PYVLFFIVLSCL  231 (348)
Q Consensus       160 s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~  231 (348)
                      ++++.+++..+.|.++++.+   -+|.+..++.++...+.++|....+||+.....  .+.....   ...+..+..+|.
T Consensus       172 aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~  251 (349)
T KOG1443|consen  172 ASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGL  251 (349)
T ss_pred             HHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHH
Confidence            99999999999999987543   478999999999999999999999998755321  2222222   233455667778


Q ss_pred             HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHH
Q 018987          232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY  293 (348)
Q Consensus       232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~  293 (348)
                      .++.....-+..+.+++..+.++.+..+.+.+.+.+.++.+|.++..++.|..++..|+..+
T Consensus       252 laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  252 LAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            88888888899999999999999999999999999999999999999999999999999998

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.95  E-value=1.6e-25  Score=198.22  Aligned_cols=252  Identities=15%  Similarity=0.086  Sum_probs=197.2

Q ss_pred             HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHH-HHHHHHHhhhhhhhcccchhHHHHH
Q 018987           26 VICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFG-VLNGISIGLLNLSLGFNSVGFYQMT  104 (348)
Q Consensus        26 ~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~~~~~~~l  104 (348)
                      ....|+.+++  ...|..+.+.|++.+.+++.+....+   +++.++.+....+ ++..++..+.+.|++|++++.+.++
T Consensus         5 ~~~~k~~~~~--~~~~~~~~~~r~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii   79 (260)
T TIGR00950         5 GVVIGQYLEG--QVPLYFAVFRRLIFALLLLLPLLRRR---PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL   79 (260)
T ss_pred             HHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhc---cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence            3467888873  33489999999999888877765443   3344555555555 4678888999999999999999999


Q ss_pred             HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHH
Q 018987          105 KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD-LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSST  183 (348)
Q Consensus       105 ~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~  183 (348)
                      .++.|+++++++.+++|||++++++.++.++++|+.+....+ .+.+..|++++++++++|+.+.++.|+..++.+.++.
T Consensus        80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~  159 (260)
T TIGR00950        80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELL  159 (260)
T ss_pred             HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHH
Confidence            999999999999999999999999999999999999976543 4456789999999999999999999999875544455


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH-HHHHHHHHHhhhcccCcchhhhhhhhHHHH
Q 018987          184 QLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI-SVSVNFSTFLVIGKTSPVTYQVLGHLKTCL  262 (348)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~  262 (348)
                      ....+.+..+.+.+.+.....+...    .    .+...+..++..+++ +...+..+++++++.++...+.+.+++|++
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~  231 (260)
T TIGR00950       160 QFTGWVLLLGALLLLPFAWFLGPNP----Q----ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLV  231 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCC----C----cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            5555666677766666544332111    1    122233334444444 445666778999999999999999999999


Q ss_pred             HHHHHHHhcCCCCchhhhhhHHHHHHHH
Q 018987          263 VLAFGYVLLHDPFSWRNILGILIAVIGM  290 (348)
Q Consensus       263 ~~v~s~~~~~e~~t~~~~~G~~li~~g~  290 (348)
                      +++++++++||++++.+++|.++++.|+
T Consensus       232 ~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       232 ALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999986

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.95  E-value=6e-25  Score=197.59  Aligned_cols=266  Identities=14%  Similarity=0.093  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhh
Q 018987           12 VGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNL   91 (348)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (348)
                      +..+++-.+.........|+..+  +++ |..+.++|++++.+++.++.+.++.+.++++++..+..|++.+....+.++
T Consensus        14 ~~~~~la~~~~~~~~~~~K~~~~--~~~-~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   90 (293)
T PRK10532         14 ILLLLIAMASIQSGASLAKSLFP--LVG-APGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYL   90 (293)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHH--HcC-HHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344457899988  456 899999999999988877654333333445566666778777788888899


Q ss_pred             hhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc--c-cccchhHHHHHHHHHHHHHHHH
Q 018987           92 SLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT--D-LQLNVLGSVLSLLAVLTTCVAQ  168 (348)
Q Consensus        92 al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~--~-~~~~~~G~~~~l~s~~~~a~~~  168 (348)
                      +++++|++.+.++..+.|+++++++.    ||+..  +.++.+++.|+.++...  + .+.+..|++++++++++||.|.
T Consensus        91 al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~  164 (293)
T PRK10532         91 SIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYI  164 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998763    55544  44567788998886532  1 2345679999999999999999


Q ss_pred             HHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHH-HHHHHHHhhhccc
Q 018987          169 IMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISV-SVNFSTFLVIGKT  247 (348)
Q Consensus       169 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~  247 (348)
                      +..||..++  .++... .+....+.+.+.+.....++    .    ..++...+..+++.++++. ..+..+++++++.
T Consensus       165 v~~r~~~~~--~~~~~~-~~~~~~~~~~l~~~~~~~~~----~----~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~  233 (293)
T PRK10532        165 LSGQRAGAE--HGPATV-AIGSLIAALIFVPIGALQAG----E----ALWHWSILPLGLAVAILSTALPYSLEMIALTRL  233 (293)
T ss_pred             HHHHHHhcc--CCchHH-HHHHHHHHHHHHHHHHHccC----c----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999763  455554 34455556555554433221    0    0122222333334444443 3455668999999


Q ss_pred             CcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018987          248 SPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  297 (348)
Q Consensus       248 ~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~  297 (348)
                      ++..++++.+++|+++.+++++++||++++.+++|.++++.|++.+.+..
T Consensus       234 ~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        234 PTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             ChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999987543

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.94  E-value=1.9e-25  Score=181.45  Aligned_cols=289  Identities=20%  Similarity=0.251  Sum_probs=255.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhh
Q 018987           12 VGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNL   91 (348)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (348)
                      ..+.+.|+.+++.+.+.||++++..+|+....+.+.|.+.+.+.+.+..+.+..+.+..+.+++++.+++...+.+....
T Consensus         8 ~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SK   87 (309)
T COG5070           8 LTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSK   87 (309)
T ss_pred             chHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhccc
Confidence            35678899999999999999999999999999999999999998888877665565567778899999999999999999


Q ss_pred             hhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccc-------hhHHHHHHHHHHHH
Q 018987           92 SLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN-------VLGSVLSLLAVLTT  164 (348)
Q Consensus        92 al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~-------~~G~~~~l~s~~~~  164 (348)
                      +++|++++.+++++++..|.++....+++|.|.+..+..+.++.+.......++|.+..       ..|++|+...+++.
T Consensus        88 sLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~Nclss  167 (309)
T COG5070          88 SLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSS  167 (309)
T ss_pred             ceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhH
Confidence            99999999999999999999999999999999999999999999999999998875321       35999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhh
Q 018987          165 CVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVI  244 (348)
Q Consensus       165 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  244 (348)
                      +.+.+.+|+..|-.+....+.++|....+..+++.+....|+|.+..-....  .......+.++|+++++..+...|++
T Consensus       168 aafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl--~~d~l~am~ISgl~svgiSy~saWcv  245 (309)
T COG5070         168 AAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNL--SVDSLMAMFISGLCSVGISYCSAWCV  245 (309)
T ss_pred             HHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCC--ChHHHHHHHHHHHHHhhhhhccceeE
Confidence            9999999998887788889999999999999999999999988665322222  23345678889999999999999999


Q ss_pred             cccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccc
Q 018987          245 GKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQ  302 (348)
Q Consensus       245 ~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~  302 (348)
                      +.+++++.++++.++.....+.|.++|||+.+...+..+.+-..+.++|...+.++++
T Consensus       246 rVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q  303 (309)
T COG5070         246 RVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ  303 (309)
T ss_pred             eehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999988765443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.89  E-value=4.6e-21  Score=171.44  Aligned_cols=242  Identities=16%  Similarity=0.108  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHHHHHHcc--cc--ccCCCCcchh-HHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHh
Q 018987           45 TSWHLLVTFCSLHVALWMK--LF--EHKPFDPRAV-MGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLF  119 (348)
Q Consensus        45 ~~~r~~~~~~~l~~~~~~~--~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~  119 (348)
                      ++++.....+++.++...+  ..  +..+.+++.. ...++....+..+.+.++++.+++.+..+.++.|++++++++++
T Consensus        31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~  110 (281)
T TIGR03340        31 LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT  110 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH
Confidence            4666666666666554332  11  1112223333 33455677888899999999999999999999999999999999


Q ss_pred             hccccchhhHHHHHHHhhhhheeeccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHH-HHHhhhHHHHHHH
Q 018987          120 FRKKFSRNIQLSLVILLVGVGIATVTD-LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQ-LLYQSCPYQALTL  197 (348)
Q Consensus       120 l~e~~s~~~~~~~~l~~~G~~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~l  197 (348)
                      +|||+++++|.++.+++.|+.+....+ .+.+..|+.++++++++|+.|.++.|+..+  +.++.. ...+. ..+.+..
T Consensus       111 ~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~--~~~~~~~~~~~~-~~~~~~~  187 (281)
T TIGR03340       111 LGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAAL--GVPAFYSALGYL-GIGFLAM  187 (281)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhcccccc--chhcccccHHHH-HHHHHHH
Confidence            999999999999999999999876533 234456888999999999999999887644  223221 11111 1222211


Q ss_pred             -HHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCc
Q 018987          198 -FIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFS  276 (348)
Q Consensus       198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t  276 (348)
                       .+..........  ... ...+...+..+...++.+...+..+++++++.++...+.+.+++|+++++++++++||+++
T Consensus       188 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~  264 (281)
T TIGR03340       188 GWPFLLLYLKRHG--RSM-FPYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWY  264 (281)
T ss_pred             HHHHHHHHHHHhc--cch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCcc
Confidence             222221110000  000 0111223445566666666677778999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHH
Q 018987          277 WRNILGILIAVIGMVL  292 (348)
Q Consensus       277 ~~~~~G~~li~~g~~l  292 (348)
                      ..+++|.+++++|+.+
T Consensus       265 ~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       265 LTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHhHHh
Confidence            9999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.87  E-value=8.3e-20  Score=155.92  Aligned_cols=262  Identities=19%  Similarity=0.164  Sum_probs=220.0

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHccc-cccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHH
Q 018987           36 LGFTFATTLTSWHLLVTFCSLHVALWMKL-FEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTIL  114 (348)
Q Consensus        36 ~~f~~p~~~~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i  114 (348)
                      ..|..|.++.+.|-+.+.++-..+...++ ....+.+|+++..+++...++..+.+.|++|++-+...+.+++-.+.+++
T Consensus        46 ~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml  125 (327)
T KOG1581|consen   46 ERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVML  125 (327)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence            46777999999999999999877655443 34456778899999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccchhhHHHHHHHhhhhheeeccc-c--------ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH
Q 018987          115 LETLFFRKKFSRNIQLSLVILLVGVGIATVTD-L--------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQL  185 (348)
Q Consensus       115 ~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~-~--------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~  185 (348)
                      ...++.|+|++.+++++..++.+|+.+....+ .        ..++.|+.+...+-+..++.+..++++.++++++++++
T Consensus       126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~m  205 (327)
T KOG1581|consen  126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHM  205 (327)
T ss_pred             HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHH
Confidence            99999999999999999999999999966531 1        24578999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHH
Q 018987          186 LYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLA  265 (348)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v  265 (348)
                      +++..++.++...... +..+.....-.+ ...+++.+.=+...++++...+.+.+.-+++.|+.+.+.++..+.+++++
T Consensus       206 M~~vNLf~~i~~~~~l-i~qg~~~~av~F-~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~  283 (327)
T KOG1581|consen  206 MFGVNLFSAILNGTYL-ILQGHLLPAVSF-IKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIM  283 (327)
T ss_pred             HHHHHHHHHHHHHHhh-hcCCCCchHHHH-HHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHH
Confidence            9999999998876553 232222111111 22345566666667778888889999999999999999999999999999


Q ss_pred             HHHHhcCCCCchhhhhhHHHHHHHHHHHhhhccc
Q 018987          266 FGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSL  299 (348)
Q Consensus       266 ~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~  299 (348)
                      .+.++||++.++.||.|..+++.|+.+-...+.+
T Consensus       284 lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  284 LSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            9999999999999999999998888776555544

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.87  E-value=7.3e-20  Score=152.12  Aligned_cols=249  Identities=16%  Similarity=0.148  Sum_probs=204.3

Q ss_pred             HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhh
Q 018987           28 CNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLA  107 (348)
Q Consensus        28 ~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~  107 (348)
                      ..|.++...+   |.-.+++|..++.++++.+.+.++++..+.+|+.....|++.+.++.++|.+++.+|.+.+..+..+
T Consensus        30 ~Ak~LFP~vG---~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~  106 (292)
T COG5006          30 FAKSLFPLVG---AAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFT  106 (292)
T ss_pred             HHHHHccccC---hhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhc
Confidence            4577887444   8999999999999999999887777888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc---cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHH
Q 018987          108 IIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD---LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQ  184 (348)
Q Consensus       108 ~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~  184 (348)
                      .|+.++.++.      -+.++.+.+.+.+.|+.+....+   .+.|..|..+++.++.||+.|.+..||.-+  ..+..+
T Consensus       107 GPL~vA~~~s------Rr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~  178 (292)
T COG5006         107 GPLAVALLSS------RRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR--AEHGTA  178 (292)
T ss_pred             cHHHHHHHhc------cchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc--cCCCch
Confidence            9999887654      34556666777778877755433   567899999999999999999999999875  346666


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHH-HhhhcccCcchhhhhhhhHHHHH
Q 018987          185 LLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST-FLVIGKTSPVTYQVLGHLKTCLV  263 (348)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~a~~~~~~~~~~~v~~  263 (348)
                      .+..-+..++++.+|+.....++        .-.++..+...+..++++....|.. -.++++.++.+++++..++|.++
T Consensus       179 g~a~gm~vAaviv~Pig~~~ag~--------~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~a  250 (292)
T COG5006         179 GVAVGMLVAALIVLPIGAAQAGP--------ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALA  250 (292)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcch--------hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHH
Confidence            66666677777777776533322        1234455666777777777777776 77899999999999999999999


Q ss_pred             HHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          264 LAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       264 ~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                      .+.+++++||.+|+.||.|++.++.+..-..+
T Consensus       251 Al~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l  282 (292)
T COG5006         251 ALSGLIFLGETLTLIQWLAIAAVIAASAGSTL  282 (292)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999776554

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.87  E-value=1.2e-18  Score=156.62  Aligned_cols=263  Identities=17%  Similarity=0.147  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcccc-cc-CCCCcchhHH-HHHHHHHHHhhhhhhhccc
Q 018987           20 ISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLF-EH-KPFDPRAVMG-FGVLNGISIGLLNLSLGFN   96 (348)
Q Consensus        20 ~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~al~~~   96 (348)
                      ..........|....+  ...+....+.|...+.+........++. +. .+.+++.... .++.......+.+.+++++
T Consensus        17 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (292)
T COG0697          17 LLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYT   94 (292)
T ss_pred             HHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3333334444555552  2336666667999888884444433322 11 1222223333 4557778888999999999


Q ss_pred             chhHHHHHHhhHHHHHHHHHH-HhhccccchhhHHHHHHHhhhhheeeccccccc---hhHHHHHHHHHHHHHHHHHHHH
Q 018987           97 SVGFYQMTKLAIIPCTILLET-LFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN---VLGSVLSLLAVLTTCVAQIMTN  172 (348)
Q Consensus        97 ~~~~~~~l~~~~pi~~~i~~~-l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~---~~G~~~~l~s~~~~a~~~v~~~  172 (348)
                      +++.++++.++.|+++.++++ +++|||++++++.++.+++.|+.+....+...+   ..|+.+++.++++++.+.++.|
T Consensus        95 ~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~  174 (292)
T COG0697          95 SASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVK  174 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997 777999999999999999999999988664433   5899999999999999999999


Q ss_pred             HHhhhcCCCHHHHHH-hhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHH-HHHHHHHhhhcccCcc
Q 018987          173 TIQKKFKVSSTQLLY-QSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISV-SVNFSTFLVIGKTSPV  250 (348)
Q Consensus       173 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~a~  250 (348)
                      +..   +.++..... +...  ....+..........       .......+......++++. ..++..++.+++.++.
T Consensus       175 ~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~  242 (292)
T COG0697         175 RLS---RLGPVTLALLLQLL--LALLLLLLFFLSGFG-------APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGAS  242 (292)
T ss_pred             Hhc---CCChHHHHHHHHHH--HHHHHHHHHHhcccc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            987   234444444 2222  111111111111110       1222233445555555555 4677778999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          251 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       251 ~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      ..+...+++|+.+.+++++++||+++..+++|..+++.|+.+....
T Consensus       243 ~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         243 LVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999998764

>TIGR00688 rarD rarD protein

Probab=99.87  E-value=1.3e-19  Score=160.01  Aligned_cols=243  Identities=13%  Similarity=0.098  Sum_probs=166.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-ccc-----ccCCCCcc----hhH
Q 018987            7 FQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KLF-----EHKPFDPR----AVM   76 (348)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~~-----~~~~~~~~----~~~   76 (348)
                      +....+++.++|...+.    ..|. ..  +.+ |..+.++|++++.+++.++... ++.     +.++.+++    ...
T Consensus         3 g~~~~i~a~~~wg~~~~----~~k~-~~--~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYY----YSKL-LK--PLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLL   74 (256)
T ss_pred             cHHHHHHHHHHHHHHHH----HHHH-hc--cCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHH
Confidence            45556666666666665    5576 34  455 9999999999998887665422 211     11111122    234


Q ss_pred             HHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHH
Q 018987           77 GFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVL  156 (348)
Q Consensus        77 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~  156 (348)
                      ..+++.+.+..+.++++++++++.++++.++.|+++++++++++|||++++++.+++++++|+.+...++.+.+    .+
T Consensus        75 ~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~  150 (256)
T TIGR00688        75 LCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WE  150 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HH
Confidence            45667788899999999999999999999999999999999999999999999999999999998754322211    46


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHH
Q 018987          157 SLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSV  236 (348)
Q Consensus       157 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (348)
                      +++++++|+.|.+..||..+ +  +..+...+. ........+.. ...++.. ...   ......|..++..++++...
T Consensus       151 ~l~aa~~~a~~~i~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~-~~~~~~~-~~~---~~~~~~~~~l~~~g~~t~i~  221 (256)
T TIGR00688       151 ALVLAFSFTAYGLIRKALKN-T--DLAGFCLET-LSLMPVAIYYL-LQTDFAT-VQQ---TNPFPIWLLLVLAGLITGTP  221 (256)
T ss_pred             HHHHHHHHHHHHHHHhhcCC-C--CcchHHHHH-HHHHHHHHHHH-HHhccCc-ccc---cCchhHHHHHHHHHHHHHHH
Confidence            78899999999999999754 2  222222111 11111111111 1111111 000   01111344555666677777


Q ss_pred             HHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHh
Q 018987          237 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVL  270 (348)
Q Consensus       237 ~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~  270 (348)
                      +.....++|+.++...+...+++|+++.+++.++
T Consensus       222 ~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       222 LLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            8888999999999999999999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.86  E-value=8.4e-19  Score=154.00  Aligned_cols=286  Identities=19%  Similarity=0.174  Sum_probs=225.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHccc---ccc--CC---------CCcch
Q 018987           10 GTVGALSLSVISSVSIVICNKALISSLGFTF-ATTLTSWHLLVTFCSLHVALWMKL---FEH--KP---------FDPRA   74 (348)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~-p~~~~~~r~~~~~~~l~~~~~~~~---~~~--~~---------~~~~~   74 (348)
                      .....++...+...++.++.|+.-.+.++++ |.+..+.--++-.+++........   .++  +.         .+..+
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            4455666677888888889999887655555 888887777777776666543321   011  11         12235


Q ss_pred             hHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc---c-----
Q 018987           75 VMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT---D-----  146 (348)
Q Consensus        75 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~---~-----  146 (348)
                      +.+.+++|.+++.+.+.++.+.+++++++..++..+.|+++++++++||.+++||.++++.+.|+.+....   +     
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~  174 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS  174 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence            66678899999999999999999999999999999999999999999999999999999999999997621   1     


Q ss_pred             ---cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhH
Q 018987          147 ---LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVL  223 (348)
Q Consensus       147 ---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (348)
                         .+..+.|....+.++.+.++..+|.+|++|+.+.+-+..+.....++.+..+......++.......+-..++...|
T Consensus       175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw  254 (345)
T KOG2234|consen  175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVW  254 (345)
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHH
Confidence               23347899999999999999999999999987888887777777788877766555555433322334455666777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhccc
Q 018987          224 FFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSL  299 (348)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~  299 (348)
                      .+++..++.+    ......+|+.+-...+....+..+++.+.|+.++|.++|....+|..+++.++.+|...+.+
T Consensus       255 ~vVl~~a~gG----Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~  326 (345)
T KOG2234|consen  255 LVVLLNAVGG----LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR  326 (345)
T ss_pred             HHHHHHhccc----hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence            7777777777    33445589999999999999999999999999999999999999999999999999954443

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.85  E-value=1.6e-19  Score=151.97  Aligned_cols=283  Identities=19%  Similarity=0.258  Sum_probs=215.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-----cCCchHHHHHHHHHHHHHHHHHHHHHcccccc----------------CCCCcch
Q 018987           16 SLSVISSVSIVICNKALISS-----LGFTFATTLTSWHLLVTFCSLHVALWMKLFEH----------------KPFDPRA   74 (348)
Q Consensus        16 ~~~~~~~~~~~~~~k~~~~~-----~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~----------------~~~~~~~   74 (348)
                      ++....+..++++.||.=+.     .+|+.|...+..-++--+.++..+...+.+..                ++.+...
T Consensus         9 ~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~l   88 (372)
T KOG3912|consen    9 LIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVL   88 (372)
T ss_pred             hhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcce
Confidence            45567777888999998653     56888888885555544444444433322111                1223344


Q ss_pred             hHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc--------
Q 018987           75 VMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--------  146 (348)
Q Consensus        75 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~--------  146 (348)
                      +++.++|...+..+.+.++.+++++.+|+++....||+.+++.-+++++++.+||+++.....|++++...|        
T Consensus        89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~  168 (372)
T KOG3912|consen   89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPY  168 (372)
T ss_pred             ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCc
Confidence            566799999999999999999999999999999999999999999999999999999999999999976642        


Q ss_pred             --cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhccccc------c-c---cc
Q 018987          147 --LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTN------K-N---VF  214 (348)
Q Consensus       147 --~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~-~---~~  214 (348)
                        .+.-..|+.+.+++-+.-|.+.++.+|..++.+++|.+...|...++.+++-.+.......+..      + .   .+
T Consensus       169 ~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~  248 (372)
T KOG3912|consen  169 TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDW  248 (372)
T ss_pred             cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhH
Confidence              1233679999999999999999999999999999999999999999977765444333221111      0 0   00


Q ss_pred             -----ccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHH
Q 018987          215 -----AFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIG  289 (348)
Q Consensus       215 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g  289 (348)
                           .....+..........+....+|+......|..++++-.+...++..+..+++..+..|.++..|+.|..+.+.|
T Consensus       249 ~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~G  328 (372)
T KOG3912|consen  249 GDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMG  328 (372)
T ss_pred             HHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 011122222223333333344677778888999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcc
Q 018987          290 MVLYSYCCS  298 (348)
Q Consensus       290 ~~l~~~~~~  298 (348)
                      +.+|+-.-.
T Consensus       329 i~lY~~il~  337 (372)
T KOG3912|consen  329 IILYNQILF  337 (372)
T ss_pred             HHHHHHHHh
Confidence            999986543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.84  E-value=7.1e-20  Score=150.35  Aligned_cols=255  Identities=16%  Similarity=0.230  Sum_probs=211.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHccc-cccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHH
Q 018987           37 GFTFATTLTSWHLLVTFCSLHVALWMKL-FEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILL  115 (348)
Q Consensus        37 ~f~~p~~~~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~  115 (348)
                      .|.+.+.+.++|+....++.-+....++ .+..+.+-+.+...++.|.+.+...|.|++|+|-+...+-++..||-++++
T Consensus        49 ~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMil  128 (337)
T KOG1580|consen   49 KFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL  128 (337)
T ss_pred             eehHHHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence            4778889999999998888766654433 344445556666778899999999999999999999999999999999999


Q ss_pred             HHHhhccccchhhHHHHHHHhhhhheeecccc-------ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHh
Q 018987          116 ETLFFRKKFSRNIQLSLVILLVGVGIATVTDL-------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQ  188 (348)
Q Consensus       116 ~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~-------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~  188 (348)
                      +.++.|+++.++++.+++++++|+++.-..+.       .....|-++.+++--..++....++|+.+.+.....+++++
T Consensus       129 GVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~  208 (337)
T KOG1580|consen  129 GVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFY  208 (337)
T ss_pred             ehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHH
Confidence            99999999999999999999999999766421       22357999999999999999999999988777788899999


Q ss_pred             hhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHH
Q 018987          189 SCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGY  268 (348)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~  268 (348)
                      +.+++.+.+.....+ .|+......+ ..-.+..++-+...++.+.+.++..+..+...+|.+-+++...+..++++.|.
T Consensus       209 ~NlwStL~Lg~g~lf-TGElweF~yF-~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SV  286 (337)
T KOG1580|consen  209 TNLWSTLYLGAGLLF-TGELWEFFYF-VQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISV  286 (337)
T ss_pred             HHHHHHHHhhhhhee-hhhHHHHHHH-HHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHH
Confidence            999999886654433 2222111111 22346667777778888888899999999999999999999999999999999


Q ss_pred             HhcCCCCchhhhhhHHHHHHHHHHH
Q 018987          269 VLLHDPFSWRNILGILIAVIGMVLY  293 (348)
Q Consensus       269 ~~~~e~~t~~~~~G~~li~~g~~l~  293 (348)
                      ++|+++++.+||+|.++++.|...=
T Consensus       287 llf~npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  287 LLFNNPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             HHhcCcCcHHHHHHHHHHHHHhhhH
Confidence            9999999999999999999997653

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.84  E-value=6.2e-18  Score=144.53  Aligned_cols=278  Identities=17%  Similarity=0.153  Sum_probs=211.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-ccc-c--cCCCCcc---hhHH
Q 018987            5 QKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KLF-E--HKPFDPR---AVMG   77 (348)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~~-~--~~~~~~~---~~~~   77 (348)
                      +++.+..+.+-++|+..-.    ..|.+-.   .+ +..+.+.|.+-+..+....... |+. +  .-.++++   .+..
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~----y~kll~~---~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l   77 (293)
T COG2962           6 RKGILLALLAYLLWGLLPL----YFKLLEP---LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLAL   77 (293)
T ss_pred             cchhHHHHHHHHHHHHHHH----HHHHHcc---CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHH
Confidence            4567777777777776654    5565543   34 7889999999988877765432 211 1  1122233   3334


Q ss_pred             HHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHH
Q 018987           78 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLS  157 (348)
Q Consensus        78 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~  157 (348)
                      .++....+...+.||.++-.+-.+.+-....|++.++++++++|||+++.||++++++.+|+....+...+.++....++
T Consensus        78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la  157 (293)
T COG2962          78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALA  157 (293)
T ss_pred             HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            46677788888899999988778888888899999999999999999999999999999999999998888998777766


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHH
Q 018987          158 LLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVN  237 (348)
Q Consensus       158 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (348)
                          ++|++|...-|+.    ++|+.+-.......-.+..+......+...+    +....+...+.+++..|+++..--
T Consensus       158 ----~sf~~Ygl~RK~~----~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~----~~~~~~~~~~~LLv~aG~vTavpL  225 (293)
T COG2962         158 ----LSFGLYGLLRKKL----KVDALTGLTLETLLLLPVALIYLLFLADSGQ----FLQQNANSLWLLLVLAGLVTAVPL  225 (293)
T ss_pred             ----HHHHHHHHHHHhc----CCchHHhHHHHHHHHhHHHHHHHHHHhcCch----hhhcCCchHHHHHHHhhHHHHHHH
Confidence                8999999887666    6677777766655544444443333332211    122234556678888999998877


Q ss_pred             HHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccc
Q 018987          238 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQ  302 (348)
Q Consensus       238 ~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~  302 (348)
                      .....+-|+.+=.+.+++.|++|....+++++++||+++..+.+..+.+.+|..+|....-++.+
T Consensus       226 ~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r  290 (293)
T COG2962         226 LLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTAR  290 (293)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77788899999999999999999999999999999999999999999999999999887654433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.82  E-value=1.3e-18  Score=152.57  Aligned_cols=218  Identities=18%  Similarity=0.159  Sum_probs=181.6

Q ss_pred             HHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecccc--------ccc
Q 018987           79 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL--------QLN  150 (348)
Q Consensus        79 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~--------~~~  150 (348)
                      +.+..+.++..|.|+.+++++..+++.+++-+|+.+++.++..||++..+.+++.+.++|+++...++.        +..
T Consensus       166 c~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~  245 (416)
T KOG2765|consen  166 CPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRP  245 (416)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccch
Confidence            334455777889999999999999999999999999999999999999999999999999999887632        234


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHH
Q 018987          151 VLGSVLSLLAVLTTCVAQIMTNTIQKKF--KVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL  228 (348)
Q Consensus       151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (348)
                      ..|.++++++++.||.|.++.||...++  ++|......+..++..+++-|...+.+..  ..+.++.+....+..++..
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~--~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF--GEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh--ccCcccCCCCceeEeeeHh
Confidence            7899999999999999999999988765  56776677777777777776666555533  2223444444445556666


Q ss_pred             HHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018987          229 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  298 (348)
Q Consensus       229 ~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~  298 (348)
                      +.+.+++.-|.+.++.-.++|+.+++-..++...+++.+.++-+.++|+.+++|.+.+++|.+..++...
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence            7777788899999999999999999999999999999999999999999999999999999999876543

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.82  E-value=1e-18  Score=146.44  Aligned_cols=292  Identities=16%  Similarity=0.142  Sum_probs=238.5

Q ss_pred             cchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHH
Q 018987            5 QKFQLGTVGA-LSLSVISSVSIVICNKALISSLGFT-FATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLN   82 (348)
Q Consensus         5 ~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~f~-~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (348)
                      +++++.+-+. .....+..+..-.+..++++..+|+ +.|.+|+.|+++-..+..+......-+++..+||.+..++.+.
T Consensus        37 ~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t  116 (367)
T KOG1582|consen   37 DKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLT  116 (367)
T ss_pred             cCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhh
Confidence            3444444432 2344555666777889999998998 7999999999987776666554444455667899999999999


Q ss_pred             HHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc----cccchhHHHHHH
Q 018987           83 GISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD----LQLNVLGSVLSL  158 (348)
Q Consensus        83 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~----~~~~~~G~~~~l  158 (348)
                      ...+.+.+-++.|++-+...+++++..+-+++.+.++-+.|+...++.+..+..+|+++....|    .+++..|+++.-
T Consensus       117 ~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIs  196 (367)
T KOG1582|consen  117 VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMIS  196 (367)
T ss_pred             hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999987654    467889999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHH
Q 018987          159 LAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNF  238 (348)
Q Consensus       159 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (348)
                      .+-++.|+-..++++.+++++-+..++++|....+.+.++..... .++..+...+-.++........++-...+++...
T Consensus       197 gALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvl-Tge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~  275 (367)
T KOG1582|consen  197 GALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVL-TGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIV  275 (367)
T ss_pred             HHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHh-cccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHH
Confidence            999999999999999999888888999999988888877654433 3333322223333444456666666777777677


Q ss_pred             HHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018987          239 STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  297 (348)
Q Consensus       239 ~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~  297 (348)
                      .....++..+|..++.+...+..+++++|+++|..++|....-|..+++.|+.+-.+.+
T Consensus       276 ~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  276 FVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            77788999999999999999999999999999999999999999999999999876665

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.81  E-value=1.1e-20  Score=157.93  Aligned_cols=274  Identities=14%  Similarity=0.112  Sum_probs=207.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcccccc-CCCCcc-hhHHHHHHHHH
Q 018987            7 FQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEH-KPFDPR-AVMGFGVLNGI   84 (348)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~   84 (348)
                      .+....+..+- .+++.++.+..|.+-.    + |..+.-.|++.-.++..++...++... .+...| .+++-|+....
T Consensus        36 p~~gl~l~~vs-~ff~~~~vv~t~~~e~----~-p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~t  109 (346)
T KOG4510|consen   36 PNLGLLLLTVS-YFFNSCMVVSTKVLEN----D-PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFT  109 (346)
T ss_pred             CccCceehhhH-HHHhhHHHhhhhhhcc----C-hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhh
Confidence            33444444444 5666666666554443    2 788888886666666555544332221 233333 44455777777


Q ss_pred             HHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc--------------cccc
Q 018987           85 SIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--------------LQLN  150 (348)
Q Consensus        85 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~--------------~~~~  150 (348)
                      +..+.+++++|.+.+.+.++..++|.++.+++++++|||+++.+.++..+.+.|++++....              .+.+
T Consensus       110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~  189 (346)
T KOG4510|consen  110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYD  189 (346)
T ss_pred             HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccccc
Confidence            78888999999999999999999999999999999999999999999999999999987621              1234


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018987          151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC  230 (348)
Q Consensus       151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (348)
                      ..|.+.++.+++.-|.-.++.|++-|  +.+..-.+.|....+.+..++......       .+..++...-+++++..|
T Consensus       190 ~~gt~aai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig-------~~~lP~cgkdr~l~~~lG  260 (346)
T KOG4510|consen  190 IPGTVAAISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIG-------AVQLPHCGKDRWLFVNLG  260 (346)
T ss_pred             CCchHHHHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhcc-------ceecCccccceEEEEEeh
Confidence            56888888888888888888898877  567766677776666666554433222       233344444566778889


Q ss_pred             HHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          231 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       231 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                      ++++..+......+++-.|...++..+...+++.++..++|||.+|++.|.|.++++.+.++...
T Consensus       261 vfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~  325 (346)
T KOG4510|consen  261 VFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL  325 (346)
T ss_pred             hhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888887766543

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.81  E-value=1.4e-18  Score=150.75  Aligned_cols=212  Identities=20%  Similarity=0.217  Sum_probs=173.5

Q ss_pred             CCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecccc--
Q 018987           70 FDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL--  147 (348)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~--  147 (348)
                      ++..++.+.+++|.+++.+.+.++++++++.+++++++..+++++++++++|+|++++||.++.+.+.|+.+....+.  
T Consensus        15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            344567778899999999999999999999999999999999999999999999999999999999999999765221  


Q ss_pred             ---------------ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhccccccc
Q 018987          148 ---------------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKN  212 (348)
Q Consensus       148 ---------------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  212 (348)
                                     +....|+++.++++++.++..|+.||.+|+.+.+.+....+...++.+..++.....++....+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~  174 (244)
T PF04142_consen   95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISES  174 (244)
T ss_pred             cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccC
Confidence                           11358999999999999999999999999888888888888888888777666554443322222


Q ss_pred             ccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHH
Q 018987          213 VFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILI  285 (348)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~l  285 (348)
                      .+-..++...|..+...++.+    ......+|+.+...-+....+..+++.+.++.+||.++|....+|..+
T Consensus       175 g~f~G~~~~~~~~i~~~a~gG----llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~  243 (244)
T PF04142_consen  175 GFFHGYSWWVWIVIFLQAIGG----LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL  243 (244)
T ss_pred             CchhhcchHHHHHHHHHHHhh----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence            233344555555566566555    344556899999999999999999999999999999999999999765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.79  E-value=6.8e-17  Score=144.69  Aligned_cols=261  Identities=15%  Similarity=0.118  Sum_probs=187.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHH----HHHHHH
Q 018987            8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMG----FGVLNG   83 (348)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~   83 (348)
                      .+...++.+.|...++.    .|.+.   +++.++.+   |+.++.+++..+....+.+  +.+.+..+.    .|+...
T Consensus         3 ~l~~lia~~~wGs~g~~----~k~~~---g~~~~~~~---~~~~g~l~~~~~~~~~~~~--~~~~~~~~~~g~l~G~~w~   70 (290)
T TIGR00776         3 ILIALIPALFWGSFVLI----NVKIG---GGPYSQTL---GTTFGALILSIAIAIFVLP--EFWALSIFLVGLLSGAFWA   70 (290)
T ss_pred             hHHHHHHHHHHhhhHHH----HhccC---CCHHHHHH---HHHHHHHHHHHHHHHHhCC--cccccHHHHHHHHHHHHHH
Confidence            34556677777777764    35444   45544443   6777777766654332221  122233333    345577


Q ss_pred             HHHhhhhhhhcccchhHHHHHHh-hHHHHHHHHHHHhhccccchhh----HHHHHHHhhhhheeeccccc-------cc-
Q 018987           84 ISIGLLNLSLGFNSVGFYQMTKL-AIIPCTILLETLFFRKKFSRNI----QLSLVILLVGVGIATVTDLQ-------LN-  150 (348)
Q Consensus        84 ~~~~~~~~al~~~~~~~~~~l~~-~~pi~~~i~~~l~l~e~~s~~~----~~~~~l~~~G~~l~~~~~~~-------~~-  150 (348)
                      ..+.+.+.+.++++++.+..+.+ ..+++..+.+.+++|||.++++    ..+++++++|+.+....+.+       .+ 
T Consensus        71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~  150 (290)
T TIGR00776        71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNF  150 (290)
T ss_pred             hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccch
Confidence            77799999999999999988888 8888999999999999999999    99999999999997653211       33 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhH---HHHHHHHHHHHHhhcccccccccccccCchhHHHHH
Q 018987          151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCP---YQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIV  227 (348)
Q Consensus       151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (348)
                      ..|++++++++++|+.|.+..|+.    +.++.+..+.+..   .+.+...+..  .+    . ...   ..... +...
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~--~~----~-~~~---~~~~~-~~~~  215 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH--IL----A-KPL---KKYAI-LLNI  215 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH--hc----c-cch---HHHHH-HHHH
Confidence            679999999999999999999976    3577777444332   2332222111  00    0 001   11222 3334


Q ss_pred             HHHHHHHHHHHHHHhhhc-ccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhh----hhHHHHHHHHHHHhh
Q 018987          228 LSCLISVSVNFSTFLVIG-KTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMVLYSY  295 (348)
Q Consensus       228 ~~~~~~~~~~~~~~~~i~-~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~----~G~~li~~g~~l~~~  295 (348)
                      ..|++....+..++...+ +.++...+++..++|+.+++.+++++||+.++.++    +|.++++.|+.+...
T Consensus       216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            477777666777778888 99999999999999999999999999999999999    999999999988654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.79  E-value=2.2e-18  Score=144.93  Aligned_cols=272  Identities=15%  Similarity=0.201  Sum_probs=208.6

Q ss_pred             HHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcc-cchhHHHHHH
Q 018987           27 ICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGF-NSVGFYQMTK  105 (348)
Q Consensus        27 ~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~l~  105 (348)
                      ..-..+.+. +-..-..+|+.|+++-..-.++....-...+++.+.+.+...-..+...+.++|+++++ +|.+.-.+++
T Consensus        20 v~lE~L~~~-~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfR   98 (330)
T KOG1583|consen   20 VFLELLVRN-EPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFR   98 (330)
T ss_pred             HHHHHHHHh-CCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEe
Confidence            344555553 33346788999988876655554321122235677787877777777888999999988 9999999999


Q ss_pred             hhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc---cc---------c---cc----hhHHHHHHHHHHHHHH
Q 018987          106 LAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT---DL---------Q---LN----VLGSVLSLLAVLTTCV  166 (348)
Q Consensus       106 ~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~---~~---------~---~~----~~G~~~~l~s~~~~a~  166 (348)
                      +..++.++++++++.|+|++.+|+.+++++.+|++++...   |.         +   .+    ..|+.+...+.+..|.
T Consensus        99 sgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~  178 (330)
T KOG1583|consen   99 SGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAY  178 (330)
T ss_pred             cCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999997652   11         0   01    3689999999999999


Q ss_pred             HHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHH-HHhhcc---cccc----cccccccCchhHHHHHHHHHHHHHHHH
Q 018987          167 AQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIG-PFLDGL---LTNK----NVFAFKYTPYVLFFIVLSCLISVSVNF  238 (348)
Q Consensus       167 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (348)
                      ..+++|+..++++-++-+.++|.........+... .+...+   ...+    ...... -+..|+.++++++..+...-
T Consensus       179 mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~-vP~~~~yLl~n~L~Qy~Cik  257 (330)
T KOG1583|consen  179 MGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFK-VPSMWVYLLFNVLTQYFCIK  257 (330)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcc-ccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987776544332 111111   0010    111112 35566777777777766655


Q ss_pred             HHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccc
Q 018987          239 STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE  300 (348)
Q Consensus       239 ~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~  300 (348)
                      ..+..-.++++++.+++-.++..++.++|.+.|+++++++.|+|..+++.|.++|.....+.
T Consensus       258 gVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~  319 (330)
T KOG1583|consen  258 GVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHP  319 (330)
T ss_pred             hhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            55777788999999999999999999999999999999999999999999999998765543

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.74  E-value=1.4e-18  Score=144.55  Aligned_cols=260  Identities=14%  Similarity=0.158  Sum_probs=204.4

Q ss_pred             HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHH
Q 018987           25 IVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMT  104 (348)
Q Consensus        25 ~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l  104 (348)
                      ..+.+.++-.. +.+.|...++..+..-.++..++...|+ +.-+..|++++++++...=.+++...|.||++....+.+
T Consensus        33 ~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lL  110 (336)
T KOG2766|consen   33 TAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR-KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLL  110 (336)
T ss_pred             chhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh-HHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHH
Confidence            45666766664 4677999998888887777776655443 333456777888888888888888999999999999999


Q ss_pred             HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc--------cccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018987          105 KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--------LQLNVLGSVLSLLAVLTTCVAQIMTNTIQK  176 (348)
Q Consensus       105 ~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~--------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~  176 (348)
                      .+...+.+.+++|+++|.|+.+.++.|++++++|+.+++..|        .+....|+++.++++-+||..++..+.+.|
T Consensus       111 Dcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk  190 (336)
T KOG2766|consen  111 DCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK  190 (336)
T ss_pred             HHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHh
Confidence            999999999999999999999999999999999999987744        234468999999999999999999999999


Q ss_pred             hcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhh
Q 018987          177 KFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLG  256 (348)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~  256 (348)
                        +.|..+++....++++++..+= ++.+...    .....|+... ...+...++-+..+...-..+|..+++...+--
T Consensus       191 --n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~----~~tl~w~~~i-~~yl~f~L~MFllYsl~pil~k~~~aT~~nlsl  262 (336)
T KOG2766|consen  191 --NADRVELMGFLGLFGAIISAIQ-FIFERHH----VSTLHWDSAI-FLYLRFALTMFLLYSLAPILIKTNSATMFNLSL  262 (336)
T ss_pred             --cCcHHHHHHHHHHHHHHHHHHH-Hhhhccc----eeeEeehHHH-HHHHHHHHHHHHHHHhhHHheecCCceEEEhhH
Confidence              7899999999999999887654 3343221    1223333222 222223334444444446778999999999888


Q ss_pred             hhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          257 HLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       257 ~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      .....+++++  ..||-+.+|...+..+.+..|.++|..+
T Consensus       263 LTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r  300 (336)
T KOG2766|consen  263 LTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR  300 (336)
T ss_pred             hHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence            8889999998  6778889999999999999999999543

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.71  E-value=2e-16  Score=128.44  Aligned_cols=143  Identities=31%  Similarity=0.574  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh-----cCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccc-----cCchh
Q 018987          153 GSVLSLLAVLTTCVAQIMTNTIQKK-----FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFK-----YTPYV  222 (348)
Q Consensus       153 G~~~~l~s~~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~  222 (348)
                      |.++++.++++.|+++++.|+..++     ++.++.++++|+.+.+.+.+++..+..|++..........     .....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            7899999999999999999999987     5899999999999999999999988888765333222111     14567


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          223 LFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                      +..++..|++++..++..+.++++++|++.++.+.+|.+..++.|+++|||++|+.+++|+++.+.|+++|++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999874

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00803 nst UDP-galactose transporter

Probab=99.37  E-value=5.4e-12  Score=108.93  Aligned_cols=194  Identities=19%  Similarity=0.107  Sum_probs=127.4

Q ss_pred             cchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec--------------------ccc-------c
Q 018987           96 NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV--------------------TDL-------Q  148 (348)
Q Consensus        96 ~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~--------------------~~~-------~  148 (348)
                      ++.+.....++..++++++......++|++..|+++.++...|++....                    ++.       +
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g   81 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG   81 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence            3556677777888888888888888888778888888887777764221                    111       2


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHH
Q 018987          149 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL  228 (348)
Q Consensus       149 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (348)
                      ....|....+.+.++.++..+++++..|+++...+........++.+.........+........+...++...+..++ 
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  160 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGL-  160 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHH-
Confidence            3467888888899999999999999877554433333333333333321111111111111111111122222333333 


Q ss_pred             HHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHH
Q 018987          229 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY  293 (348)
Q Consensus       229 ~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~  293 (348)
                      ....+   .....+.+|+.++...++...++++++.++|+++|||+++..++.|..+++.|+.+|
T Consensus       161 ~~a~~---~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       161 LNVGG---GLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHhc---CceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            22222   355678899999999999999999999999999999999999999999999997765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.23  E-value=1.3e-10  Score=87.19  Aligned_cols=135  Identities=19%  Similarity=0.205  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018987          153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  232 (348)
Q Consensus       153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (348)
                      ..++++++++++++..++.|--.+  ++||...+.........++.........+....     ..++..|..++++|+.
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~-----~~~~k~~lflilSGla   76 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGG-----EIGPKSWLFLILSGLA   76 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceeccc-----ccCcceehhhhHHHHH
Confidence            468899999999999999999888  677777777666666665555444433222211     1344556788889999


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018987          233 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  294 (348)
Q Consensus       233 ~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~  294 (348)
                      +....+.+|++++...+.....+.-..+++++++|+++++|++|..+++|++++.+|.++..
T Consensus        77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999999999999999999999987643

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.14  E-value=3.9e-10  Score=87.85  Aligned_cols=124  Identities=20%  Similarity=0.377  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH-HHHHHHHH
Q 018987          162 LTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI-SVSVNFST  240 (348)
Q Consensus       162 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  240 (348)
                      ++||.+.++.|+..+  +.|+.....+....+.+ +++.....+...  .    ...+...+......+++ ....+...
T Consensus         1 ~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLK--KISPLSITFWRFLIAGI-LLILLLILGRKP--F----KNLSPRQWLWLLFLGLLGTALAYLLY   71 (126)
T ss_pred             ceeeeHHHHHHHHhc--cCCHHHHHHHHHHHHHH-HHHHHHhhcccc--c----cCCChhhhhhhhHhhccceehHHHHH
Confidence            468999999999988  47999999999998887 555555544322  0    11112222333333434 56667778


Q ss_pred             HhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018987          241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  294 (348)
Q Consensus       241 ~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~  294 (348)
                      +.++++.++...+.+..++|+++.++++++++|++++.+++|.++++.|+++..
T Consensus        72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.11  E-value=3.3e-10  Score=88.24  Aligned_cols=114  Identities=17%  Similarity=0.263  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-cc---cccCCCCcchhHHHHHH-HHHHHhhhhhhhcccchh
Q 018987           25 IVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KL---FEHKPFDPRAVMGFGVL-NGISIGLLNLSLGFNSVG   99 (348)
Q Consensus        25 ~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~   99 (348)
                      ....+|...+  ++| |...+++|+..+.+ +.++... ++   .+.++.++......+++ ..++..+.+.++++++++
T Consensus         6 ~~~~~k~~~~--~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   81 (126)
T PF00892_consen    6 YSVFSKKLLK--KIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISAS   81 (126)
T ss_pred             HHHHHHHHhc--cCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchh
Confidence            3457788887  455 89999999999997 4443322 21   22233344455555655 578889999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhee
Q 018987          100 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA  142 (348)
Q Consensus       100 ~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~  142 (348)
                      .++++.++.|+++.+++++++||+++++++.++.++++|+.+.
T Consensus        82 ~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   82 IVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.11  E-value=1.6e-08  Score=87.80  Aligned_cols=205  Identities=19%  Similarity=0.187  Sum_probs=150.2

Q ss_pred             hhHHHHHHHHHHHhhhhhhhcccchhHHHHHH-hhHHHHHHHHHHHhhccccchhhHH----HHHHHhhhhheeeccccc
Q 018987           74 AVMGFGVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQL----SLVILLVGVGIATVTDLQ  148 (348)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~l~l~e~~s~~~~~----~~~l~~~G~~l~~~~~~~  148 (348)
                      .-+..|++..++...++.+++++.++.+.=+. ..+-+.+.+.+++++||..+..++.    +++++++|+.+.+..|.+
T Consensus        47 ~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~  126 (269)
T PF06800_consen   47 VAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK  126 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence            33445788899999999999998887754444 4566778899999999999877765    788889999998775422


Q ss_pred             --------cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCc
Q 018987          149 --------LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTP  220 (348)
Q Consensus       149 --------~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  220 (348)
                              ....|+...+++.+.|..|.+..|..    +.|+++..+=++.-..+..+.+.....     ....    +.
T Consensus       127 ~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~~-----~~~~----~k  193 (269)
T PF06800_consen  127 SDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFSK-----KPFF----EK  193 (269)
T ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhccc-----cccc----cc
Confidence                    12469999999999999999997774    668887776443322222222222111     0011    11


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchh----hhhhHHHHHHHHHH
Q 018987          221 YVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWR----NILGILIAVIGMVL  292 (348)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~----~~~G~~li~~g~~l  292 (348)
                       ..+.-+..|++-...+..++...++.+....-.++-+..+++.+.+.+++||+-+..    .++|.+++++|.++
T Consensus       194 -~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  194 -KSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             -chHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence             124456677777788888888899999999999999999999999999999987765    55688888887654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.09  E-value=1.5e-09  Score=87.58  Aligned_cols=215  Identities=13%  Similarity=0.057  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc--cccchhHH
Q 018987           77 GFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--LQLNVLGS  154 (348)
Q Consensus        77 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~--~~~~~~G~  154 (348)
                      +.+++....++.+..+++.++++.++.+.....-|+.+++++.+|+|+...++++..+++.|++++.+.|  ....+.|+
T Consensus        58 PF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi  137 (290)
T KOG4314|consen   58 PFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGI  137 (290)
T ss_pred             ceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhH
Confidence            3455666777888899999999999999999999999999999999999999999999999999988643  56679999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHH----H-HhhcccccccccccccCchhHHHHHHH
Q 018987          155 VLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIG----P-FLDGLLTNKNVFAFKYTPYVLFFIVLS  229 (348)
Q Consensus       155 ~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (348)
                      .+++.++...|+|-|.-|+....  .+--+...+++..+..-+....    . .+.+ .+..+.+...+    |..+...
T Consensus       138 ~~AV~SA~~aAlYKV~FK~~iGn--An~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~-VE~~qsFA~~P----WG~l~G~  210 (290)
T KOG4314|consen  138 ACAVGSAFMAALYKVLFKMFIGN--ANFGDAAHFMSCLGFFNLCFISFPALILAFTG-VEHLQSFAAAP----WGCLCGA  210 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHHhhhHHHHHHhc-hHHHHHHhhCC----chhhhhH
Confidence            99999999999999999998873  3333444444444444332211    1 1111 11111111122    2344444


Q ss_pred             HHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018987          230 CLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  298 (348)
Q Consensus       230 ~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~  298 (348)
                      .......++.....+....|...++-..........++.++-+-.++.....|..++++|.++.-....
T Consensus       211 A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d  279 (290)
T KOG4314|consen  211 AGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED  279 (290)
T ss_pred             HHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence            555556677777777888888888777777777888887655558889999999999999988765443

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.07  E-value=9.3e-10  Score=84.31  Aligned_cols=102  Identities=20%  Similarity=0.241  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHccc-c-----ccCCCCcchhHHHHHHHH-HHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHH
Q 018987           46 SWHLLVTFCSLHVALWMKL-F-----EHKPFDPRAVMGFGVLNG-ISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETL  118 (348)
Q Consensus        46 ~~r~~~~~~~l~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l  118 (348)
                      ++|+..+.+++..+...++ .     ..++.++..++..+++.. .+..+.++|+++.+ +....+.++.|+++++++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            4788888888877654322 1     122344555556676554 88899999999999 58889999999999999999


Q ss_pred             hhccccchhhHHHHHHHhhhhheeeccccc
Q 018987          119 FFRKKFSRNIQLSLVILLVGVGIATVTDLQ  148 (348)
Q Consensus       119 ~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~  148 (348)
                      ++|||++++++.+++++++|++++.+++.+
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999998887643

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.98  E-value=8.9e-09  Score=77.37  Aligned_cols=117  Identities=17%  Similarity=0.191  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-ccccc----CCCCcchhHHHHHHHHHHHhhhhhhhcccchh
Q 018987           25 IVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KLFEH----KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVG   99 (348)
Q Consensus        25 ~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~   99 (348)
                      ..+..|.-.+  +.+ |.+.+..|.++..+++..+... ++.+.    .++.|.-+..-|+..+++..+++.|++...++
T Consensus        18 ~~iF~KIGl~--~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as   94 (140)
T COG2510          18 TPIFAKIGLE--GVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKAS   94 (140)
T ss_pred             HHHHHHHhcc--ccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcc
Confidence            3567788887  445 9999999999998888876543 33322    23344444555778889999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018987          100 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV  144 (348)
Q Consensus       100 ~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~  144 (348)
                      ...-+..+.|+++++++++++|||+|..+|++++++.+|.++.+.
T Consensus        95 ~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          95 RVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             eEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999999999999998753

>TIGR00688 rarD rarD protein

Probab=98.91  E-value=3e-08  Score=87.48  Aligned_cols=140  Identities=14%  Similarity=0.146  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHH
Q 018987          152 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL  231 (348)
Q Consensus       152 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (348)
                      .|..+.++++++|+...+..|. ..  +.++.++.++...++.+.+++.......................+......++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence            4889999999999999999997 34  58999999999998887766544332211000000110011122345566666


Q ss_pred             HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018987          232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  294 (348)
Q Consensus       232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~  294 (348)
                      +........+.+++++++.+++++.+..|+++.+++.++++|+++..+++|..+.++|+.+..
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            666777888999999999999999999999999999999999999999999999999988653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.84  E-value=9.5e-08  Score=86.15  Aligned_cols=141  Identities=13%  Similarity=0.205  Sum_probs=107.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHH
Q 018987          148 QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIV  227 (348)
Q Consensus       148 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (348)
                      +....|.++.++++++|+...++.|.. .  +.+|.++.++...++.+.+++......+.......  . .+...+....
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~-~~~~~~~~~~   77 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--I-QTPQKIFMLA   77 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--H-cCHHHHHHHH
Confidence            345679999999999999999999764 4  68999999999998887666544322211110000  0 0112223334


Q ss_pred             HHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018987          228 LSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  294 (348)
Q Consensus       228 ~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~  294 (348)
                      .+++.....+...++++++.++...+++.+..|++..++++++++|+++..+++|.++.++|+++..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            5555565667788999999999999999999999999999999999999999999999999998764

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.77  E-value=2.6e-07  Score=82.74  Aligned_cols=133  Identities=14%  Similarity=0.139  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHH
Q 018987          154 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS  233 (348)
Q Consensus       154 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (348)
                      ..+.+.+++++|.+.+..|+..++  .++.  ..+......+.+.|........    ..+.. .+...+..++..++..
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~   73 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYLAQ----VGWSR-LPATFWLLLAISAVAN   73 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhccc----CCCCC-cchhhHHHHHHHHHHH
Confidence            568899999999999999988773  2333  3444455555555544322100    01111 1223344566677777


Q ss_pred             HHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          234 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       234 ~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                      ..+....+.+.++.++...+.+.+..|+++.++++++++|+++..+++|.++++.|+.+...
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            77788889999999999999999999999999999999999999999999999999987654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.75  E-value=3.3e-07  Score=82.13  Aligned_cols=206  Identities=14%  Similarity=0.175  Sum_probs=120.0

Q ss_pred             HHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccc----cc-----
Q 018987           80 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQ----LN-----  150 (348)
Q Consensus        80 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~----~~-----  150 (348)
                      +.+.++..+...|+.+.|.+..+-+.....++.++++..++|||++++++.|..+++.|..++.....+    .+     
T Consensus        58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~  137 (300)
T PF05653_consen   58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELI  137 (300)
T ss_pred             HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHH
Confidence            366778888899999999999999999999999999999999999999999999999999986542211    11     


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHH------HHHHhhcccccccccccc
Q 018987          151 -------VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFI------IGPFLDGLLTNKNVFAFK  217 (348)
Q Consensus       151 -------~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~  217 (348)
                             +..+...... +...+.....+|..+ +     .+..|...++.+...-      ..............  + 
T Consensus       138 ~~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~-~-----~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~--f-  207 (300)
T PF05653_consen  138 ALLSQPGFLVYFILVLV-LILILIFFIKPRYGR-R-----NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQ--F-  207 (300)
T ss_pred             HHhcCcceehhHHHHHH-HHHHHHHhhcchhcc-c-----ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchh--h-
Confidence                   1112111111 111222222222211 1     1122222222111100      00011100011111  1 


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhH-HHHHHHHHHHhcCC--CCch----hhhhhHHHHHHHH
Q 018987          218 YTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLK-TCLVLAFGYVLLHD--PFSW----RNILGILIAVIGM  290 (348)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~-~v~~~v~s~~~~~e--~~t~----~~~~G~~li~~g~  290 (348)
                      .++..|.+++...++...-.+..++++++.++.....+.+.- ...+++-|.++|+|  +.++    ....|..+++.|+
T Consensus       208 ~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV  287 (300)
T PF05653_consen  208 TYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGV  287 (300)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence            223334444433334344444558899999987776655544 55777788888988  4555    4566778888888


Q ss_pred             HHHhh
Q 018987          291 VLYSY  295 (348)
Q Consensus       291 ~l~~~  295 (348)
                      .+.+.
T Consensus       288 ~lL~~  292 (300)
T PF05653_consen  288 FLLSS  292 (300)
T ss_pred             heeec
Confidence            77654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.67  E-value=9.2e-07  Score=78.13  Aligned_cols=121  Identities=19%  Similarity=0.149  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCC--CCcchhHHHHH-HHHHHHhhhhhhhcc
Q 018987           19 VISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKP--FDPRAVMGFGV-LNGISIGLLNLSLGF   95 (348)
Q Consensus        19 ~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~al~~   95 (348)
                      .+......+..|....+.+.+ +.....+|+.++.+++.+.......+...  .++...+..++ ...+...+.++++++
T Consensus       137 ~~~~a~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  215 (260)
T TIGR00950       137 GISFALGTVLYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTL  215 (260)
T ss_pred             HHHHHHHHHHHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333334445667776643322 44555578898888887765543222211  12223344555 456788889999999


Q ss_pred             cchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhh
Q 018987           96 NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVG  140 (348)
Q Consensus        96 ~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~  140 (348)
                      .+++.+.++.++.|+++++++++++||+++..++.|..+++.|++
T Consensus       216 ~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       216 VDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999864

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.56  E-value=2.4e-06  Score=78.67  Aligned_cols=139  Identities=12%  Similarity=0.131  Sum_probs=108.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018987          151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC  230 (348)
Q Consensus       151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (348)
                      ..-+..++...++|+.+.++.|...+ .++++....++-..++++.++++....+....    .+. .+...+..+...|
T Consensus        12 ~~~~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~----~~~-~~~~~~~~l~l~g   85 (358)
T PLN00411         12 AVFLTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS----LPP-LSVSILSKIGLLG   85 (358)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc----cCc-chHHHHHHHHHHH
Confidence            34566778888999999999999986 68999999999999988888777654432110    000 1111234445566


Q ss_pred             HHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHh------cCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          231 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVL------LHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       231 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~------~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                      ++++.++...+..++++++..++++.+..|+++.++++++      ++|+++..+++|.++.++|+.+...
T Consensus        86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            6665566677889999999999999999999999999999      6999999999999999999987654

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.35  E-value=1.3e-05  Score=69.51  Aligned_cols=142  Identities=13%  Similarity=0.170  Sum_probs=112.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHH
Q 018987          149 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL  228 (348)
Q Consensus       149 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (348)
                      .+..|+++++.+-+.|++.-.+.|-+.   ..++.++..+...++...++........+....   +...++..+.....
T Consensus         4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~---~~~~~p~~~~~~~l   77 (293)
T COG2962           4 DSRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELK---QLLKQPKTLLMLAL   77 (293)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHhCcHHHHHHHH
Confidence            346799999999999999999988873   578999999999999888776665554433222   22334545566666


Q ss_pred             HHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          229 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       229 ~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      +++.-..-.....++........++.-.+++|++.++.|.++++|+++..|++..++..+|+..-.+.
T Consensus        78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            66555555555578999999999999999999999999999999999999999999999999875554

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.35  E-value=2e-06  Score=65.23  Aligned_cols=64  Identities=16%  Similarity=0.089  Sum_probs=59.9

Q ss_pred             HHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheee
Q 018987           80 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT  143 (348)
Q Consensus        80 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~  143 (348)
                      +++++...+...+++.+|.+.+..+.++.++++.+++++++|||++.+++.++.++++|++++.
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4678888999999999999999999999999999999999999999999999999999998764

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.34  E-value=0.00053  Score=62.27  Aligned_cols=221  Identities=12%  Similarity=0.042  Sum_probs=136.1

Q ss_pred             hhHHHHHHHHHHHhhhhhhhcccchhHHH-HHHhhHHHHHHHHHHHhhcccc---c----hhhHHHHHHHhhhhheeec-
Q 018987           74 AVMGFGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFRKKF---S----RNIQLSLVILLVGVGIATV-  144 (348)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pi~~~i~~~l~l~e~~---s----~~~~~~~~l~~~G~~l~~~-  144 (348)
                      ..++.|++..+++..+..+.+++.++... +-..++-+...++..++++|-.   +    ..-..+++++++|+.+... 
T Consensus        75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            44455778888999999999999988844 4445667788888888888654   2    2366788888999999776 


Q ss_pred             ---ccc---------ccchhHHHHHHHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHhhhH---HHHHHHHH-HH
Q 018987          145 ---TDL---------QLNVLGSVLSLLAVLTTCVAQI-------MTNTIQKKFKVSSTQLLYQSCP---YQALTLFI-IG  201 (348)
Q Consensus       145 ---~~~---------~~~~~G~~~~l~s~~~~a~~~v-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~-~~  201 (348)
                         .|.         .....|+++.+++.+.++.|+.       ..+...+ .+.++.....-+..   .+..+.-. ..
T Consensus       155 g~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~~~~~lp~~~~~~~G~~~~n~~~~  233 (345)
T PRK13499        155 GQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDPLYAALPSYVVIMGGGAITNLGFC  233 (345)
T ss_pred             hhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence               332         1225799999999999999994       3333211 34555544332222   22211111 00


Q ss_pred             HHhhccccc-ccccccccC----chhHHHHHHHHHHHHHHHHHHHhhhcccCcchhh----hhhhhHHHHHHHHHHHhcC
Q 018987          202 PFLDGLLTN-KNVFAFKYT----PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQ----VLGHLKTCLVLAFGYVLLH  272 (348)
Q Consensus       202 ~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~----~~~~~~~v~~~v~s~~~~~  272 (348)
                      ......... ....+....    ..-.......|+.-+..++.+....++.+.....    +...+..+++.+.+. +++
T Consensus       234 ~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lk  312 (345)
T PRK13499        234 FIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLK  312 (345)
T ss_pred             HHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhh
Confidence            110000010 001111111    1223344566666666666666666666444333    334677789999998 599


Q ss_pred             CCCc------hhhhhhHHHHHHHHHHHhhh
Q 018987          273 DPFS------WRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       273 e~~t------~~~~~G~~li~~g~~l~~~~  296 (348)
                      |.-+      ...++|++++++|..+....
T Consensus       313 E~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        313 EWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             hccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            9777      57789999999998886553

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.23  E-value=4.6e-05  Score=59.34  Aligned_cols=119  Identities=18%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHH
Q 018987          152 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL  231 (348)
Q Consensus       152 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (348)
                      .|+++.+.+.++.+...++.|+-.++.+..+.  ....  ...   +  ....              ++  ...+..+.+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~--~~~~--~~~---~--~~~~--------------~p--~~~i~lgl~   56 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSH--AWDF--IAA---L--LAFG--------------LA--LRAVLLGLA   56 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccc--hhHH--HHH---H--HHHh--------------cc--HHHHHHHHH
Confidence            47889999999999999999998775432111  1100  000   0  0000              00  001222222


Q ss_pred             HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHH--hcCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYV--LLHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~--~~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                      +.....+....++++.+...+..+....++...+.++.  +|||++|+.+++|.+++++|+++.+.
T Consensus        57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            22233455678899999998888888887777777774  89999999999999999999999764

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.21  E-value=3.4e-05  Score=69.49  Aligned_cols=115  Identities=7%  Similarity=-0.024  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcc---hhHHHHH-HHHHHHhhhhhhhcccchhH
Q 018987           25 IVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPR---AVMGFGV-LNGISIGLLNLSLGFNSVGF  100 (348)
Q Consensus        25 ~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~al~~~~~~~  100 (348)
                      ..+..|...+  +.+ |.... +..+++.+++.+....... ....++.   ..+..++ +..+...++++++++++++.
T Consensus       163 ~~v~~r~~~~--~~~-~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~  237 (293)
T PRK10532        163 YILSGQRAGA--EHG-PATVA-IGSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRT  237 (293)
T ss_pred             HHHHHHHHhc--cCC-chHHH-HHHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhH
Confidence            4455566655  333 55555 4455555555554332211 1112222   2234455 45677788899999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018987          101 YQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV  144 (348)
Q Consensus       101 ~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~  144 (348)
                      +.++.++.|++..++++++++|+++..++.|..+++.|.+....
T Consensus       238 as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        238 FGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999988654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.20  E-value=6.4e-05  Score=67.65  Aligned_cols=130  Identities=12%  Similarity=-0.046  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHH
Q 018987          154 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS  233 (348)
Q Consensus       154 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (348)
                      ....+.-.+.|+...+..|....  +.+|....++....+++.+++.........     .   ... .+......|.+.
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-----~---~~~-~~~~~~~~g~~~   78 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGHPL-----P---TLR-QWLNAALIGLLL   78 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-----C---cHH-HHHHHHHHHHHH
Confidence            34566778999999999998777  789999999999988888776543321110     0   111 122233344333


Q ss_pred             -HHHHHHHHhhh-cccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          234 -VSVNFSTFLVI-GKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       234 -~~~~~~~~~~i-~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                       ...+...+... ++.++...+++.++.|+++.+++.+ ++|+++..+++|..+.++|+.+...
T Consensus        79 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         79 LAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence             23344555666 8889999999999999999999975 7999999999999999999888654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.18  E-value=5.8e-05  Score=68.03  Aligned_cols=130  Identities=14%  Similarity=0.216  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHH
Q 018987          152 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL  231 (348)
Q Consensus       152 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (348)
                      .++++.+.++++|+...+..|...+  +.+|.....+....+.+.+.+..   . ...    .. ..+.   ...+.+++
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~--~~~P~~~~~~R~~~a~l~l~~~~---~-~~~----~~-~~~~---~~~~~~~l   69 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSE--SLGPVGGAAMIYSVSGLLLLLTV---G-FPR----LR-QFPK---RYLLAGGL   69 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHHHHc---c-ccc----cc-cccH---HHHHHHhH
Confidence            4677899999999999999998877  68999999988877777665432   1 110    00 1111   12223333


Q ss_pred             HHHHHHHHHHhhh----cccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          232 ISVSVNFSTFLVI----GKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       232 ~~~~~~~~~~~~i----~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                      ....+....+...    +..++...+++.++.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus        70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~  137 (295)
T PRK11689         70 LFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG  137 (295)
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence            3333333334433    456778889999999999999999999999999999999999999987653

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.16  E-value=7.9e-05  Score=60.07  Aligned_cols=119  Identities=18%  Similarity=0.100  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhh-----cCCchHHHHHHHHHHHHHHHHHHHHHcc-ccc-------cCC--C--C---cchhHHHHHHHH
Q 018987           24 SIVICNKALISS-----LGFTFATTLTSWHLLVTFCSLHVALWMK-LFE-------HKP--F--D---PRAVMGFGVLNG   83 (348)
Q Consensus        24 ~~~~~~k~~~~~-----~~f~~p~~~~~~r~~~~~~~l~~~~~~~-~~~-------~~~--~--~---~~~~~~~~~~~~   83 (348)
                      .-.+..|..+++     .+.+ |..+..+....+.+++.+..... ..+       ..+  .  +   +..++..+++..
T Consensus        14 l~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (153)
T PF03151_consen   14 LRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAF   92 (153)
T ss_pred             HHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHH
Confidence            334455666665     3555 78888788888888877764322 111       011  0  1   112333466677


Q ss_pred             HHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheee
Q 018987           84 ISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT  143 (348)
Q Consensus        84 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~  143 (348)
                      +.+...+..++++++-..+++.....+.+.++++++++|+++..++.|+++.++|..+-.
T Consensus        93 ~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   93 LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            788888999999999999999999999999999999999999999999999999998754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.12  E-value=0.00012  Score=66.16  Aligned_cols=125  Identities=14%  Similarity=0.105  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHH
Q 018987          154 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS  233 (348)
Q Consensus       154 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (348)
                      .++.++++++|+...+..|...+  +.+|....++....+++.+++..   ..   ...      +   +..+...++..
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~~---~~---~~~------~---~~~~~~~g~~~   68 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFFV---AR---PKV------P---LNLLLGYGLTI   68 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHh---cC---CCC------c---hHHHHHHHHHH
Confidence            35688999999999999998877  68999999999877665544322   10   000      0   11222233332


Q ss_pred             HH-HHHHHHhhhcc-cCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          234 VS-VNFSTFLVIGK-TSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       234 ~~-~~~~~~~~i~~-~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                      .. .....+...++ .++...+++.+..|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus        69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            22 22233556666 5778889899999999999999999999999999999999999887653

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.07  E-value=0.00016  Score=66.74  Aligned_cols=134  Identities=13%  Similarity=0.069  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCC-HHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018987          154 SVLSLLAVLTTCVAQIMTNTIQKKFKVS-STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  232 (348)
Q Consensus       154 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (348)
                      ..++++-=.+...++++.|...+  ..+ |+.+..+....+.+...+...  .+....++   .......+..++..|++
T Consensus        51 ~~~~~~wy~~s~~~~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~--~~~~~~~~---~~~~~~~~~~llp~gl~  123 (350)
T PTZ00343         51 ALLFLTWYALNVLYVVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWA--TGFRKIPR---IKSLKLFLKNFLPQGLC  123 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHH--hCCCCCCC---CCCHHHHHHHHHHHHHH
Confidence            33443333444556888888887  467 999999998888766544322  11111111   11111233455666666


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018987          233 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  294 (348)
Q Consensus       233 ~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~  294 (348)
                      ....+...+.+++++++..++++...+|+++++++.++++|+++..++.|+++++.|+.+..
T Consensus       124 ~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        124 HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            66556666788999999999999999999999999999999999999999999999998864

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.02  E-value=6.5e-05  Score=57.36  Aligned_cols=71  Identities=17%  Similarity=0.344  Sum_probs=58.8

Q ss_pred             HHHHHHHHH-HHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018987          226 IVLSCLISV-SVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  297 (348)
Q Consensus       226 ~~~~~~~~~-~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~  297 (348)
                      .+..|+++. ..+...+.+.++.++ ..+.+..+.|+++.+++.++++|+++..+++|.+++++|+++....+
T Consensus        37 ~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   37 LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            333344443 556667888999885 78899999999999999999999999999999999999999987643

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.98  E-value=0.00027  Score=63.94  Aligned_cols=121  Identities=12%  Similarity=0.088  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhh
Q 018987          165 CVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVI  244 (348)
Q Consensus       165 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  244 (348)
                      ...+++.|...++ -..|..+..+....+.+...+...  .+... ...    .+..-+..+...|++........+.++
T Consensus        15 ~~~~~~NK~~l~~-~~~P~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~l   86 (302)
T TIGR00817        15 VYFNIYNKKLLNV-FPYPYFKTLISLAVGSLYCLLSWS--SGLPK-RLK----ISSALLKLLLPVAIVHTIGHVTSNVSL   86 (302)
T ss_pred             HHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHHHHH--hCCCC-CCC----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677777773 246778888777766655443311  11111 111    112233445556666666667778999


Q ss_pred             cccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHH
Q 018987          245 GKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY  293 (348)
Q Consensus       245 ~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~  293 (348)
                      +++++...+++....|+++.+++.++++|+++..+++|.+++++|+.+.
T Consensus        87 ~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        87 SKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999764

specificities overlap.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.92  E-value=0.00014  Score=65.25  Aligned_cols=129  Identities=15%  Similarity=0.115  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018987          153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  232 (348)
Q Consensus       153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (348)
                      |++++++++++|+...+..|+..   +.++.+...  ...+.+...........+   .     ......+..-..+|+.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~~--~~~g~l~~~~~~~~~~~~---~-----~~~~~~~~~g~l~G~~   68 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG---GGPYSQTLG--TTFGALILSIAIAIFVLP---E-----FWALSIFLVGLLSGAF   68 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC---CCHHHHHHH--HHHHHHHHHHHHHHHhCC---c-----ccccHHHHHHHHHHHH
Confidence            67899999999999999998874   445554442  233443333222222110   0     1224455566667777


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhhh-hHHHHHHHHHHHhcCCCCchhh----hhhHHHHHHHHHHHh
Q 018987          233 SVSVNFSTFLVIGKTSPVTYQVLGH-LKTCLVLAFGYVLLHDPFSWRN----ILGILIAVIGMVLYS  294 (348)
Q Consensus       233 ~~~~~~~~~~~i~~~~a~~~~~~~~-~~~v~~~v~s~~~~~e~~t~~~----~~G~~li~~g~~l~~  294 (348)
                      -...++.++.++++.+...+-.+.+ +.+++..+++.+++||+.+..+    ++|.+++++|+.+..
T Consensus        69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            7777889999999999888877777 8888999999999999999999    999999999988864

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.86  E-value=0.00073  Score=53.34  Aligned_cols=132  Identities=20%  Similarity=0.252  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018987          153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  232 (348)
Q Consensus       153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (348)
                      ..++++.+.++-+.+..+.-++.++.+ +|+...+.....+.+.+.......+.. ......    .  .-++...+|++
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~----~--~p~w~~lGG~l   73 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLASLS----S--VPWWAYLGGLL   73 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhc----c--CChHHhccHHH
Confidence            357888999999999999999988544 688888888888888877666655533 111111    1  11344458999


Q ss_pred             HHHHHHHHHhhhcccCcchhhhhhhhHHH-HHHHHHHH-hc---CCCCchhhhhhHHHHHHHHHH
Q 018987          233 SVSVNFSTFLVIGKTSPVTYQVLGHLKTC-LVLAFGYV-LL---HDPFSWRNILGILIAVIGMVL  292 (348)
Q Consensus       233 ~~~~~~~~~~~i~~~~a~~~~~~~~~~~v-~~~v~s~~-~~---~e~~t~~~~~G~~li~~g~~l  292 (348)
                      +..+.......+++.++..+......-.+ .+.+++.+ +|   .+++++.+++|.+++++|+.+
T Consensus        74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            98888888899999999988877776655 55677875 33   458999999999999999863

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.85  E-value=7.1e-05  Score=58.27  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=62.6

Q ss_pred             hHHHH-HHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHH--hhccccchhhHHHHHHHhhhhheeeccc
Q 018987           75 VMGFG-VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETL--FFRKKFSRNIQLSLVILLVGVGIATVTD  146 (348)
Q Consensus        75 ~~~~~-~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l--~l~e~~s~~~~~~~~l~~~G~~l~~~~~  146 (348)
                      ++..+ +++.+...+.+.+++..|.+.+.-+.+..++++.+.++.  ++||+++..++.|+.++++|+.+....+
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            34444 488999999999999999999999989888888888874  8999999999999999999999977543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=5.7e-05  Score=66.37  Aligned_cols=204  Identities=11%  Similarity=0.115  Sum_probs=124.6

Q ss_pred             HHHHH-HHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecccccc-----
Q 018987           76 MGFGV-LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQL-----  149 (348)
Q Consensus        76 ~~~~~-~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~-----  149 (348)
                      +..|+ .+.++-..++.|+.+.|.+..+-+.++..+..++++..+++||++..-.+|.+++++|..+++....+.     
T Consensus        67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t  146 (335)
T KOG2922|consen   67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIES  146 (335)
T ss_pred             HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccccc
Confidence            33444 777888999999999999999999999999999999999999999999999999999999987643211     


Q ss_pred             -----------chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHH----------HHhhccc
Q 018987          150 -----------NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIG----------PFLDGLL  208 (348)
Q Consensus       150 -----------~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~  208 (348)
                                 .++.+...++-.++  +-..+.+   ++++  ..+++.|...++.+..+-..          ..+.+..
T Consensus       147 ~~el~~~~~~~~Fliy~~~iil~~~--il~~~~~---p~~g--~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~  219 (335)
T KOG2922|consen  147 VEEVWELATEPGFLVYVIIIILIVL--ILIFFYA---PRYG--QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN  219 (335)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHH--HHheeec---cccc--ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc
Confidence                       11111111111111  1111111   1111  22445555555544321111          1112111


Q ss_pred             ccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhH-HHHHHHHHHHhcCC--CCch----hhhh
Q 018987          209 TNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLK-TCLVLAFGYVLLHD--PFSW----RNIL  281 (348)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~-~v~~~v~s~~~~~e--~~t~----~~~~  281 (348)
                      +    .   ..+..|.+++....+...-....+++++..++...+.+.++- ..+++..|.++|.|  ..+.    ....
T Consensus       220 q----l---~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~  292 (335)
T KOG2922|consen  220 Q----L---FYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELC  292 (335)
T ss_pred             c----c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            1    1   112233333333333333334447888888877776666644 66778888999988  3443    4567


Q ss_pred             hHHHHHHHHHHH
Q 018987          282 GILIAVIGMVLY  293 (348)
Q Consensus       282 G~~li~~g~~l~  293 (348)
                      |...++.|+.+.
T Consensus       293 Gf~ti~~G~flL  304 (335)
T KOG2922|consen  293 GFVTIFLGIFLL  304 (335)
T ss_pred             hHHHhhheeeEe
Confidence            788888887775

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.82  E-value=0.00026  Score=52.30  Aligned_cols=73  Identities=27%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             cchhHHHHHHHHHHHhhhhhhhcccchhH-HHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018987           72 PRAVMGFGVLNGISIGLLNLSLGFNSVGF-YQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV  144 (348)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~  144 (348)
                      +...+..-+++.++..+...+++++|.+. +.+-.....+.+++.+++++||+.+..+++++.+++.|++....
T Consensus        30 ~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          30 LWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            34444455688888899999999999999 45555566778889999999999999999999999999987543

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.82  E-value=0.00034  Score=52.49  Aligned_cols=68  Identities=15%  Similarity=0.050  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHhhhhhhhcccchhHHHHH-HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhee
Q 018987           75 VMGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA  142 (348)
Q Consensus        75 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~  142 (348)
                      ....-+++.++.++...+++++|.+.+..+ .....+.+++.+++++||+++..++.++.++++|++..
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            334455788888999999999999995554 45677888899999999999999999999999999874

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.81  E-value=0.00028  Score=53.94  Aligned_cols=71  Identities=17%  Similarity=0.126  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHHhhhhhhhcccchhHHHHHH-hhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018987           74 AVMGFGVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV  144 (348)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~  144 (348)
                      .....-++++++.++...+++++|.+.+..+- ....+.+++.+.++++|+++..+++++.++++|++....
T Consensus        32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            34445568888999999999999999976664 688899999999999999999999999999999998754

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.80  E-value=0.00058  Score=61.78  Aligned_cols=126  Identities=19%  Similarity=0.204  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhhhcCCC--HHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHH
Q 018987          164 TCVAQIMTNTIQKKFKVS--STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF  241 (348)
Q Consensus       164 ~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (348)
                      +..+.+++|++.++....  +..+++.+.....+...+........     .    .....+.-....+++........+
T Consensus        12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~   82 (303)
T PF08449_consen   12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-----K----SRKIPLKKYAILSFLFFLASVLSN   82 (303)
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-----C----CCcChHHHHHHHHHHHHHHHHHHH
Confidence            344678889988765545  77777776666665544433322200     0    011112223334455556667778


Q ss_pred             hhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018987          242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  298 (348)
Q Consensus       242 ~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~  298 (348)
                      .++++.+..+..+....+++...+.+.++++++.+..++.+..++.+|+.+....+.
T Consensus        83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~  139 (303)
T PF08449_consen   83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDS  139 (303)
T ss_pred             HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccc
Confidence            889999999999999999999999999999999999999999999999999887544

; GO: 0055085 transmembrane transport

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.75  E-value=0.00021  Score=54.23  Aligned_cols=59  Identities=20%  Similarity=0.184  Sum_probs=52.1

Q ss_pred             HHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018987          236 VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  294 (348)
Q Consensus       236 ~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~  294 (348)
                      ..+....++++.+...+..+-.+.++.+.+.|+++|||++|+.+++|.++++.|+++..
T Consensus        50 ~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         50 AMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            34555677899999988888889999999999999999999999999999999988754

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.71  E-value=0.00052  Score=51.20  Aligned_cols=69  Identities=14%  Similarity=0.002  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHhhhhhhhcccchhHHHHHH-hhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheee
Q 018987           75 VMGFGVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT  143 (348)
Q Consensus        75 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~  143 (348)
                      ....-+++..+.++...+++.+|.+.+..+- ....+.+++.+++++||++|+.++.++.++++|++...
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            3344558888889999999999999955554 47788889999999999999999999999999998864

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.68  E-value=0.0011  Score=60.29  Aligned_cols=139  Identities=21%  Similarity=0.300  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018987          152 LGSVLSLLAVLTTCVAQIMTNTIQKK-FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC  230 (348)
Q Consensus       152 ~G~~~~l~s~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (348)
                      .+.+++-.-++|-+..++..+.+.++ .+.+..+. ++....-.++..+....-.+.    +.+....... ++.-++.+
T Consensus        13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs-~~~Y~~l~~vy~~~~~~r~~~----~~~~~~~~~~-~w~y~lla   86 (334)
T PF06027_consen   13 IVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQS-FFNYVLLALVYTPILLYRRGF----KKWLKVLKRP-WWKYFLLA   86 (334)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHH-HHHHHHHHHHHhhhhhhcccc----ccchhhcchh-HHHHHHHH
Confidence            45555555566666666666666554 23333333 333332222222222211111    1111111111 22333346


Q ss_pred             HHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          231 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       231 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      ++=+..++....+.++++.+...++.....+++.++|++++++++++.+++|+.+++.|+.+....
T Consensus        87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen   87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence            777788999999999999999999999999999999999999999999999999999998886654

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.65  E-value=0.00065  Score=51.23  Aligned_cols=69  Identities=19%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhhhhhhhcccchhHHHHHH-hhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018987           76 MGFGVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV  144 (348)
Q Consensus        76 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~  144 (348)
                      +..-+++.++..+...+++.+|.+.+..+. ....+.+++.+++++||+++..++.++.++++|++....
T Consensus        34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            344558888888899999999999977664 467888899999999999999999999999999998754

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.62  E-value=1.3e-05  Score=67.53  Aligned_cols=204  Identities=16%  Similarity=0.188  Sum_probs=139.0

Q ss_pred             HHHHHHHHHhhhhhhhcccchhHHHHHHh-hHHHHHHHHHHHhhccccchhhH----HHHHHHhhhhheeecccc-----
Q 018987           78 FGVLNGISIGLLNLSLGFNSVGFYQMTKL-AIIPCTILLETLFFRKKFSRNIQ----LSLVILLVGVGIATVTDL-----  147 (348)
Q Consensus        78 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~-~~pi~~~i~~~l~l~e~~s~~~~----~~~~l~~~G~~l~~~~~~-----  147 (348)
                      .|.+..++...++.+.+++.++.+.-+.. +.-+-+.+++++.+||..+..+.    .+++++++|+.+-++.|.     
T Consensus        65 sG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~  144 (288)
T COG4975          65 SGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE  144 (288)
T ss_pred             hhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence            35677778888899999988887654443 44566678999999999987764    568888999999887542     


Q ss_pred             ---ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHH
Q 018987          148 ---QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLF  224 (348)
Q Consensus       148 ---~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (348)
                         +....|+...+.+.+.|-.|.+..|..    +.|.++...-+..    .+............     +...+... +
T Consensus       145 ~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqAi----GMv~~ali~~~~~~-----~~~~~K~t-~  210 (288)
T COG4975         145 ENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQAI----GMVIGALILGFFKM-----EKRFNKYT-W  210 (288)
T ss_pred             cChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHHHH----HHHHHHHHHhhccc-----ccchHHHH-H
Confidence               112468888899999999999987776    4566655543332    12222222211000     01112222 3


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhh----hhhHHHHHHHHHHHhh
Q 018987          225 FIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRN----ILGILIAVIGMVLYSY  295 (348)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~----~~G~~li~~g~~l~~~  295 (348)
                      .-...|+.-...|...+.+.++.+-.+.=.++-+..+++++-+.++++|+-|..+    ++|++++++|..+...
T Consensus       211 ~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~  285 (288)
T COG4975         211 LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence            4455677777777888777777776666566667788899999999999988765    5677888888766544

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.61  E-value=0.0029  Score=56.41  Aligned_cols=141  Identities=21%  Similarity=0.107  Sum_probs=96.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHH
Q 018987          150 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLS  229 (348)
Q Consensus       150 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (348)
                      ...+....+..++.|+......+....+ ..+......+..........+... .. ...   ...  .....+...+..
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~~--~~~~~~~~~~~~   76 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLL-LE-PRG---LRP--ALRPWLLLLLLA   76 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHH-hh-ccc---ccc--cccchHHHHHHH
Confidence            3457788888889999999988888763 244555544444434433211111 11 000   000  011133455556


Q ss_pred             HHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHH-HhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018987          230 CLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGY-VLLHDPFSWRNILGILIAVIGMVLYSYCCS  298 (348)
Q Consensus       230 ~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~-~~~~e~~t~~~~~G~~li~~g~~l~~~~~~  298 (348)
                      ++.........+..++++++...+.+.+..|++..+++. ++++|+++..++.|..+.+.|+.+......
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~  146 (292)
T COG0697          77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG  146 (292)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence            666666667778889999999999999999999999996 777999999999999999999988765443

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=97.61  E-value=0.00018  Score=62.38  Aligned_cols=132  Identities=16%  Similarity=0.212  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018987          153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI  232 (348)
Q Consensus       153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (348)
                      |++.+++|+++++...|=.||.-.   .|++-.+.+++....+.........+             .+.+..+..++|.+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~---gDg~~fQw~~~~~i~~~g~~v~~~~~-------------~p~f~p~amlgG~l   64 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDT---GDGFFFQWVMCSGIFLVGLVVNLILG-------------FPPFYPWAMLGGAL   64 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccC---CCcHHHHHHHHHHHHHHHHHHHHhcC-------------CCcceeHHHhhhhh
Confidence            678889999999998888777633   36776666665444333333222211             11123456667777


Q ss_pred             HHHHHHHHHhhhcccCc-chhhhhhhhHHHHHHHHHHH-hcCCC-----CchhhhhhHHHHHHHHHHHhhhcccc
Q 018987          233 SVSVNFSTFLVIGKTSP-VTYQVLGHLKTCLVLAFGYV-LLHDP-----FSWRNILGILIAVIGMVLYSYCCSLE  300 (348)
Q Consensus       233 ~~~~~~~~~~~i~~~~a-~~~~~~~~~~~v~~~v~s~~-~~~e~-----~t~~~~~G~~li~~g~~l~~~~~~~~  300 (348)
                      -...|....-++|..+= ....+.+...-+.+...+-+ +||++     -++.+.+|.+++++|..+|...|...
T Consensus        65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            76677777777887662 33345555666666666654 66553     45789999999999999998876644

The region concerned is approximately 280 residues long.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.46  E-value=0.0044  Score=46.52  Aligned_cols=58  Identities=16%  Similarity=0.282  Sum_probs=48.0

Q ss_pred             HHHHHhhhcccCcchh-hhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018987          237 NFSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  294 (348)
Q Consensus       237 ~~~~~~~i~~~~a~~~-~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~  294 (348)
                      .+....++|+.+-..+ ++...+..+.+.+.+.++|+|++|+.+++|+.+++.|++..+
T Consensus        49 f~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         49 FSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            3444666777765443 777778888999999999999999999999999999998865

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.45  E-value=0.0011  Score=50.62  Aligned_cols=60  Identities=17%  Similarity=0.210  Sum_probs=48.5

Q ss_pred             HHHHHhhhcccCcchh-hhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          237 NFSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       237 ~~~~~~~i~~~~a~~~-~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      .+....++|+.+-..+ ++...+..+.+.++++++|||++|+.+++|+.++++|++..+..
T Consensus        44 f~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         44 YIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            3445666777765544 55567888899999999999999999999999999999887543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.42  E-value=0.0014  Score=47.91  Aligned_cols=59  Identities=20%  Similarity=0.116  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHhhhhhhhcccchhHHH-HHHhhHHHHHHHHHHHhhccccchhhHHHHHHH
Q 018987           77 GFGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFRKKFSRNIQLSLVIL  135 (348)
Q Consensus        77 ~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~  135 (348)
                      ..-.+++++..+...+++++|.+.+. +......+.+.+.+.+++||++|..|+.++.++
T Consensus        34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            33448888889999999999999964 455688999999999999999999999998764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.36  E-value=0.0018  Score=48.88  Aligned_cols=59  Identities=7%  Similarity=0.189  Sum_probs=48.2

Q ss_pred             HHHHhhhcccCcchh-hhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          238 FSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       238 ~~~~~~i~~~~a~~~-~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      +....++|+.+-..+ ++...+..+.++++++++|+|++++.+++|+.++++|++..+..
T Consensus        45 ~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            334566777765544 55677788899999999999999999999999999999998654

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.25  E-value=0.015  Score=45.99  Aligned_cols=137  Identities=16%  Similarity=0.123  Sum_probs=95.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018987          151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC  230 (348)
Q Consensus       151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (348)
                      .+..+..+.+.++-..+.-+.-++.+..+ +|..........+.+.+.......++.....    ....  .-++..++|
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a----~~~~--~pwW~~~GG   76 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLA----AVAS--APWWAWIGG   76 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchh----hccC--CchHHHHcc
Confidence            45678889999999999999999888443 6777777777777777776666544333222    1111  123555677


Q ss_pred             HHHHHHHHHHHhhhcccCcchhhhhhhhH-HHHHHHHHHHhc-C---CCCchhhhhhHHHHHHHHHHHh
Q 018987          231 LISVSVNFSTFLVIGKTSPVTYQVLGHLK-TCLVLAFGYVLL-H---DPFSWRNILGILIAVIGMVLYS  294 (348)
Q Consensus       231 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~-~v~~~v~s~~~~-~---e~~t~~~~~G~~li~~g~~l~~  294 (348)
                      +++..+-........+.+++.+..+-... -+.+.+++.+=+ |   .+++...++|..++++|+++.+
T Consensus        77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238          77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            88877777778888888887776555544 445566665533 3   4799999999999999966654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.23  E-value=0.0077  Score=52.72  Aligned_cols=100  Identities=10%  Similarity=0.001  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhh
Q 018987           41 ATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF  120 (348)
Q Consensus        41 p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l  120 (348)
                      |+...+=|.+-..+...++....+.+.+++..++-+..|+++...+.+...+.+....+.+..+.++.++...+.+.+++
T Consensus       164 ~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il  243 (269)
T PF06800_consen  164 GWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFIL  243 (269)
T ss_pred             hhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEE
Confidence            55555444444333333333322233333334455667889999999999999999999999999999999999999999


Q ss_pred             ccccchhhHH----HHHHHhhhhh
Q 018987          121 RKKFSRNIQL----SLVILLVGVG  140 (348)
Q Consensus       121 ~e~~s~~~~~----~~~l~~~G~~  140 (348)
                      ||+-+++++.    ++.++++|.+
T Consensus       244 ~E~Kt~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  244 KEKKTKKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             EecCchhhHHHHHHHHHHHHHhhh
Confidence            9999888665    3444444443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.15  E-value=0.0038  Score=46.63  Aligned_cols=59  Identities=19%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             HHHHHhhhcccCcch-hhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          237 NFSTFLVIGKTSPVT-YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       237 ~~~~~~~i~~~~a~~-~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                      .+....++|+.+-.. .++...+..+.+.++++++|+|++|+.+++|+.+++.|++..+.
T Consensus        43 f~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         43 MALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            344456677766544 47888888999999999999999999999999999999998754

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.08  E-value=0.0021  Score=56.05  Aligned_cols=75  Identities=27%  Similarity=0.404  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018987          224 FFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS  298 (348)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~  298 (348)
                      ......+++-...+...+.++++.+|.+..++...+.+++.+++.++++++++..||+++.+.++|+.+......
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~   92 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS   92 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence            344456666667778888999999999999999999999999999999999999999999999999998765443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.05  E-value=0.0047  Score=45.70  Aligned_cols=59  Identities=14%  Similarity=0.232  Sum_probs=49.4

Q ss_pred             HHHHhhhcccCcch-hhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          238 FSTFLVIGKTSPVT-YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       238 ~~~~~~i~~~~a~~-~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      +....++|+.+-.. .++...+-.+.+.+.++++|+|+.++.+++|+.++++|++..+..
T Consensus        45 ~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          45 YLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            34456678866544 488888889999999999999999999999999999999987754

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.98  E-value=0.0077  Score=54.85  Aligned_cols=140  Identities=14%  Similarity=0.059  Sum_probs=91.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhccccccc--ccccccCchhHHHHHH
Q 018987          151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKN--VFAFKYTPYVLFFIVL  228 (348)
Q Consensus       151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  228 (348)
                      ..|+++++++++||+...+=+|| .|   .-+++.. |. ..+....+ ..++..+....+.  ....+.+...+....+
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~k---~w~wE~~-W~-v~gi~~wl-~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-VK---KWSWETM-WS-VGGIFSWL-ILPWLIAALLLPDFWAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-cC---CCchhHH-HH-HHHHHHHH-HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence            57999999999999999888877 33   2344444 43 22222211 1221111000010  1112245566778888


Q ss_pred             HHHHHHHHHHHHHhhhcccCcchh-hhhhhhHHHHHHHHHHHhcCCCC---c----hhhhhhHHHHHHHHHHHhhhc
Q 018987          229 SCLISVSVNFSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPF---S----WRNILGILIAVIGMVLYSYCC  297 (348)
Q Consensus       229 ~~~~~~~~~~~~~~~i~~~~a~~~-~~~~~~~~v~~~v~s~~~~~e~~---t----~~~~~G~~li~~g~~l~~~~~  297 (348)
                      +|++-...+...+..+|+.+-... .+...+.-+.+++++.+++||-.   +    ...++|.+++++|+++..++-
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag  155 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG  155 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888889999999999875554 44555777888999999998743   2    357789999999999987743

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.66  E-value=0.00036  Score=59.71  Aligned_cols=135  Identities=14%  Similarity=0.162  Sum_probs=86.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018987          151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC  230 (348)
Q Consensus       151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (348)
                      ..|..+..++ ..+....++.++...   .+|.++....++.-.++..|.......+..      .+.....  +++.=|
T Consensus        37 ~~gl~l~~vs-~ff~~~~vv~t~~~e---~~p~e~a~~r~l~~mlit~pcliy~~~~v~------gp~g~R~--~LiLRg  104 (346)
T KOG4510|consen   37 NLGLLLLTVS-YFFNSCMVVSTKVLE---NDPMELASFRLLVRMLITYPCLIYYMQPVI------GPEGKRK--WLILRG  104 (346)
T ss_pred             ccCceehhhH-HHHhhHHHhhhhhhc---cChhHhhhhhhhhehhhhheEEEEEeeeee------cCCCcEE--EEEeeh
Confidence            4577777777 555566666666543   355555544433333333333332222210      0111111  122234


Q ss_pred             HHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018987          231 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  297 (348)
Q Consensus       231 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~  297 (348)
                      +.++......+++.++.+-..+.++....|++++++++.+++|+.|....+|..+.+.|+++.....
T Consensus       105 ~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  105 FMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             hhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            4444445556777888888889999999999999999999999999999999999999999876443

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.56  E-value=0.0073  Score=54.33  Aligned_cols=117  Identities=15%  Similarity=0.233  Sum_probs=80.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHH
Q 018987          150 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLS  229 (348)
Q Consensus       150 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (348)
                      ...|..+++.++++.+...+++|+-.++.+.....--.     .                   ..+...++.+|.-++ .
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-----~-------------------~~~~l~~~~W~~G~~-~   59 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-----G-------------------GRSYLRRPLWWIGLL-L   59 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----h-------------------hhHHHhhHHHHHHHH-H
Confidence            46799999999999999999999976543221110000     0                   000001111112222 2


Q ss_pred             HHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018987          230 CLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  294 (348)
Q Consensus       230 ~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~  294 (348)
                      ...+   ....+.+....++...+.++.+..++..+++..+++|+++...+.|..+++.|..+..
T Consensus        60 ~~~g---~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   60 MVLG---EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             Hhcc---hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            2223   2344556778888888999999999999999999999999999999999999987754

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.42  E-value=0.049  Score=46.66  Aligned_cols=95  Identities=9%  Similarity=0.017  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHccccccCCCCcchhHHH----HHHH-HHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHh
Q 018987           45 TSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGF----GVLN-GISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLF  119 (348)
Q Consensus        45 ~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~  119 (348)
                      +..-|.++.++.+++-.-. -.. ....+.+++.    +++. .+.+.+...++..+|...+.++.+..|.+.++.++++
T Consensus       180 ~a~gm~vAaviv~Pig~~~-ag~-~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~  257 (292)
T COG5006         180 VAVGMLVAALIVLPIGAAQ-AGP-ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF  257 (292)
T ss_pred             HHHHHHHHHHHHhhhhhhh-cch-hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH
Confidence            3366777777666653311 111 1112233333    3322 3466777899999999999999999999999999999


Q ss_pred             hccccchhhHHHHHHHhhhhhe
Q 018987          120 FRKKFSRNIQLSLVILLVGVGI  141 (348)
Q Consensus       120 l~e~~s~~~~~~~~l~~~G~~l  141 (348)
                      +||+++..||.++..++.+..=
T Consensus       258 L~e~ls~~qwlaI~~ViaAsaG  279 (292)
T COG5006         258 LGETLTLIQWLAIAAVIAASAG  279 (292)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999988877663

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.35  E-value=0.011  Score=44.55  Aligned_cols=68  Identities=22%  Similarity=0.164  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhhhhhhhcccchhHHHHH-HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheee
Q 018987           76 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT  143 (348)
Q Consensus        76 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~  143 (348)
                      ...=+++..+...+++.+...+.+.+.-+ +++.-++|++.++++.+|..+++++.++++++.|+.+++
T Consensus        45 ~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv  113 (113)
T PF10639_consen   45 IIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence            33334666777888889999998885555 688889999999998888889999999999999998763

Many members are annotated as potential transmembrane proteins.

>TIGR00803 nst UDP-galactose transporter

Probab=96.35  E-value=0.097  Score=44.94  Aligned_cols=68  Identities=16%  Similarity=0.107  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhe
Q 018987           74 AVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGI  141 (348)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l  141 (348)
                      ..+...++......+..+.++|.+.....+.....++++.+++.++++++++..++.+..+.+.|+.+
T Consensus       154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            34444556677778889999999999999999999999999999999999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.25  E-value=0.28  Score=38.67  Aligned_cols=113  Identities=16%  Similarity=0.098  Sum_probs=77.1

Q ss_pred             HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcccc-cc---CCCCcchhHHHHHHHHHHHhhhhhhhcccchhHH
Q 018987           26 VICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLF-EH---KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFY  101 (348)
Q Consensus        26 ~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  101 (348)
                      ..+|-.+-+..+  +|+.-++..+..+.+.+.++....+. +.   ++.+ ++.+..|++......+.......+.++..
T Consensus        17 ~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG~~~V~~~~~~vp~lG~~~~   93 (138)
T PF04657_consen   17 AAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLGVFFVLSNIILVPRLGAALT   93 (138)
T ss_pred             HHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHHHHHHHHHHHHhhhhhHHHH
Confidence            344444444323  48999999999999988877554332 21   1222 33334677778888888888899888886


Q ss_pred             HHHHhh-HHHHHHHHHHH----hhccccchhhHHHHHHHhhhhhe
Q 018987          102 QMTKLA-IIPCTILLETL----FFRKKFSRNIQLSLVILLVGVGI  141 (348)
Q Consensus       102 ~~l~~~-~pi~~~i~~~l----~l~e~~s~~~~~~~~l~~~G~~l  141 (348)
                      ..+.-. +.+...++..+    .-|++++.+|..++.+.++|+.+
T Consensus        94 ~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   94 TILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            655443 44455566664    45788999999999999999864

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.76  E-value=0.11  Score=45.77  Aligned_cols=134  Identities=9%  Similarity=0.001  Sum_probs=96.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-ccc-------ccCCCCcchhHHH
Q 018987            7 FQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KLF-------EHKPFDPRAVMGF   78 (348)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~~-------~~~~~~~~~~~~~   78 (348)
                      .....+..+..+..+=...+-..+.++.+++.+ ++.+.++-=+...+........ +..       +..+.-+++++..
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVS-SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHH
Confidence            355566666666666666666777788876666 5555555444444444443221 111       1123335788888


Q ss_pred             HHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhe
Q 018987           79 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGI  141 (348)
Q Consensus        79 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l  141 (348)
                      +.+.+.+..+.++.++.-.+=..+++..+-=++.+.++.+.++.+.+..||.++.+.++|+.+
T Consensus       248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            999999999998888776666677777788899999999999999999999999999998876

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.70  E-value=0.55  Score=42.49  Aligned_cols=140  Identities=12%  Similarity=0.135  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh--cCCCHHHHHHhhhHHHHHHHHHHHHHhh-----cccccccccccccCchhHHHH
Q 018987          154 SVLSLLAVLTTCVAQIMTNTIQKK--FKVSSTQLLYQSCPYQALTLFIIGPFLD-----GLLTNKNVFAFKYTPYVLFFI  226 (348)
Q Consensus       154 ~~~~l~s~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  226 (348)
                      .+..+...+-.+......|...++  .+..+.+..+..=..-.++.+.....-+     .+........+..+.+. .-+
T Consensus        17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-lk~   95 (345)
T KOG2234|consen   17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRET-LKV   95 (345)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHH-HHH
Confidence            334444445555555555554432  2456666665544443333332222221     11111111111111123 233


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018987          227 VLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS  294 (348)
Q Consensus       227 ~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~  294 (348)
                      ....++-..-|...+....+.+|.+..+...++...+.+++.++++++++..||...++...|+.+.+
T Consensus        96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            33444555556677888999999999999999999999999999999999999999999999999876

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.47  E-value=0.05  Score=39.76  Aligned_cols=49  Identities=20%  Similarity=0.175  Sum_probs=27.5

Q ss_pred             HHHHhhhcccCcchh-hhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHH
Q 018987          238 FSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIA  286 (348)
Q Consensus       238 ~~~~~~i~~~~a~~~-~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li  286 (348)
                      +....++|+.+...+ ++...+..+...+.|.++|||++|+.+++|+.++
T Consensus        44 ~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   44 YFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            445667888776655 6667788899999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.64  E-value=0.048  Score=49.36  Aligned_cols=76  Identities=13%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccc
Q 018987          225 FIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE  300 (348)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~  300 (348)
                      ..++-|.+-+..++....++++++....++++...-+++..++.++-+|++|+...++..+.+.|+++.++...++
T Consensus       161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            3344455566678888888999999999999999999999999999999999999999999999999988765544

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=94.46  E-value=0.11  Score=46.91  Aligned_cols=134  Identities=17%  Similarity=0.078  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHHH-HHHHccccccC------CCCc--chhHH
Q 018987            9 LGTVGALSLSVISSVSIVICNKALIS--SLGFTFATTLTSWHLLVTFCSLH-VALWMKLFEHK------PFDP--RAVMG   77 (348)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~k~~~~--~~~f~~p~~~~~~r~~~~~~~l~-~~~~~~~~~~~------~~~~--~~~~~   77 (348)
                      .+.+.+++ +.+....-.+..|.+++  +.+.+ +..+..+..-++.+.+. ++.........      ..+.  ..+..
T Consensus       163 ~G~i~a~~-s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (316)
T KOG1441|consen  163 FGFISAMI-SNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL  240 (316)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence            33344444 44444445566677774  34455 67777777777777777 55433211111      1111  12333


Q ss_pred             HHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018987           78 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV  144 (348)
Q Consensus        78 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~  144 (348)
                      .+++..+.+...+..+..+++=..++....--+++...++++++++.+..+..|.++.+.|+.+-..
T Consensus       241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            4567777778888899999999999999888888889999999999999999999999999988654

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=94.29  E-value=0.26  Score=37.20  Aligned_cols=108  Identities=18%  Similarity=0.182  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHH
Q 018987          159 LAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNF  238 (348)
Q Consensus       159 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (348)
                      +-+++|+..+-+.||-.++.+........+   -....     .+.              ++..+...+.+-..+.    
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~~~~---~~~~~-----Ll~--------------n~~y~ipf~lNq~GSv----   56 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKASLQLL---QEIKF-----LLL--------------NPKYIIPFLLNQSGSV----   56 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccchHHHH---HHHHH-----HHH--------------hHHHHHHHHHHHHHHH----
Confidence            346889999999999876432222221111   11111     100              1112233444444442    


Q ss_pred             HHHhhhcccCcchhhhh-hhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHH
Q 018987          239 STFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVL  292 (348)
Q Consensus       239 ~~~~~i~~~~a~~~~~~-~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l  292 (348)
                      .++..+++.+-..+..+ +.+.-+++.+.++++.+|..+...++|+++++.|+.+
T Consensus        57 ~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   57 LFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            23334566665555444 6788899999998888888899999999999999754

Many members are annotated as potential transmembrane proteins.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.31  E-value=0.44  Score=40.50  Aligned_cols=66  Identities=20%  Similarity=0.302  Sum_probs=56.5

Q ss_pred             HHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhccccc
Q 018987          236 VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES  301 (348)
Q Consensus       236 ~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~  301 (348)
                      .....+.++++.+-.+.-+-...+|+-..+++.++.+.+.+|.......+|++|+.++.+.++|..
T Consensus        98 AMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~  163 (337)
T KOG1580|consen   98 AMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG  163 (337)
T ss_pred             HHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC
Confidence            455557888888877777888899999999999999999999999999999999999998655443

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.06  E-value=3.7  Score=32.65  Aligned_cols=104  Identities=13%  Similarity=0.055  Sum_probs=63.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHcccccc-----CCCCcchhHHHHHHHHHHHhhhhhhhcccchhH-HHHHHhhHHHHH
Q 018987           39 TFATTLTSWHLLVTFCSLHVALWMKLFEH-----KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGF-YQMTKLAIIPCT  112 (348)
Q Consensus        39 ~~p~~~~~~r~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~l~~~~pi~~  112 (348)
                      .+|..-.+..+..+.+++..+...+...+     .+.+|+ .+..|++.+............+.++. ..+.-..+.+..
T Consensus        32 ~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW-~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~g  110 (150)
T COG3238          32 GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWW-AWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMG  110 (150)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchH-HHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHH
Confidence            45899999999998888777655432211     112333 33334455444444445555555554 344444555555


Q ss_pred             HHHHHHhh----ccccchhhHHHHHHHhhhhheee
Q 018987          113 ILLETLFF----RKKFSRNIQLSLVILLVGVGIAT  143 (348)
Q Consensus       113 ~i~~~l~l----~e~~s~~~~~~~~l~~~G~~l~~  143 (348)
                      .++..+=+    +++++..++.++++.++|+.+..
T Consensus       111 lliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238         111 LLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             HHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            55555433    47789999999999999965543

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=92.98  E-value=7  Score=35.53  Aligned_cols=220  Identities=15%  Similarity=0.118  Sum_probs=122.1

Q ss_pred             chhHHHHHHHHHHHhhhhhhhcccchhHH-HHHHhhHHHHHHHHHHHhh-------ccccchhhHHHHHHHhhhhheeec
Q 018987           73 RAVMGFGVLNGISIGLLNLSLGFNSVGFY-QMTKLAIIPCTILLETLFF-------RKKFSRNIQLSLVILLVGVGIATV  144 (348)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~-~~l~~~~pi~~~i~~~l~l-------~e~~s~~~~~~~~l~~~G~~l~~~  144 (348)
                      ......|++..++...+-.+.+|+..+.. .+...++..+-.++-.++.       .++-....++++++.++|+.+...
T Consensus        74 ~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~  153 (344)
T PF06379_consen   74 FWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK  153 (344)
T ss_pred             HHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence            34455677777777777888899777763 3333344444444433333       334456789999999999999765


Q ss_pred             cc-----------cccc-hhHHHHHHHHHHHHHHHHHHHHHHh------hhcCCCHHHHHH--h--hhHHHHHHHHHHHH
Q 018987          145 TD-----------LQLN-VLGSVLSLLAVLTTCVAQIMTNTIQ------KKFKVSSTQLLY--Q--SCPYQALTLFIIGP  202 (348)
Q Consensus       145 ~~-----------~~~~-~~G~~~~l~s~~~~a~~~v~~~~~~------~~~~~~~~~~~~--~--~~~~~~~~l~~~~~  202 (348)
                      .+           .+++ ..|++.++++.+..|..+.-.+.-.      .+.+.++.....  |  ...-+.+..+....
T Consensus       154 AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~  233 (344)
T PF06379_consen  154 AGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCL  233 (344)
T ss_pred             HHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHH
Confidence            21           1223 4699999999999999888765421      112334432221  1  11112233333332


Q ss_pred             Hhhcccccc---cccccccC--chhHHHHHHHHHHHHHHHHHHHhhhcccC----cchhhhhhhhHHHHHHHHHHHhcCC
Q 018987          203 FLDGLLTNK---NVFAFKYT--PYVLFFIVLSCLISVSVNFSTFLVIGKTS----PVTYQVLGHLKTCLVLAFGYVLLHD  273 (348)
Q Consensus       203 ~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----a~~~~~~~~~~~v~~~v~s~~~~~e  273 (348)
                      .........   .++....+  ..=+......|+.-+...+.+-..-.+.+    .....+.+.+..+++-+.+. +++|
T Consensus       234 ~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl-~lkE  312 (344)
T PF06379_consen  234 ILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL-ILKE  312 (344)
T ss_pred             HHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            221110110   11111111  12234444455555554444433333333    55667888888888888886 4666


Q ss_pred             ------CCchhhhhhHHHHHHHHHHH
Q 018987          274 ------PFSWRNILGILIAVIGMVLY  293 (348)
Q Consensus       274 ------~~t~~~~~G~~li~~g~~l~  293 (348)
                            +.-..-+.|+++++.++.+.
T Consensus       313 WKg~s~kt~~vl~~G~~vlI~s~~iv  338 (344)
T PF06379_consen  313 WKGASKKTIRVLVLGIAVLILSVVIV  338 (344)
T ss_pred             hccCCcccHHHHHHHHHHHHHHHHHH
Confidence                  23345577888888887664

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=92.47  E-value=2.1  Score=38.72  Aligned_cols=145  Identities=10%  Similarity=0.062  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018987          151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC  230 (348)
Q Consensus       151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (348)
                      ..|+++-.+++++.+.+.+=.||..+    =.++.......+-+.+.+|.....-..++..+... ..+...+....+.|
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkvk~----WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~-~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKVKG----WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYS-ATPASTLFWTFLFG   80 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH-hCChhHHHHHHHHH
Confidence            57999999999999998887777632    34444333222222223443332221111111111 12223444555555


Q ss_pred             HHHHHHHHHHHhhhcccC-cchhhhhhhhHHHHHHHHHHHhcC-------CCCchhhhhhHHHHHHHHHHHhhhcccc
Q 018987          231 LISVSVNFSTFLVIGKTS-PVTYQVLGHLKTCLVLAFGYVLLH-------DPFSWRNILGILIAVIGMVLYSYCCSLE  300 (348)
Q Consensus       231 ~~~~~~~~~~~~~i~~~~-a~~~~~~~~~~~v~~~v~s~~~~~-------e~~t~~~~~G~~li~~g~~l~~~~~~~~  300 (348)
                      +.-.......-..+|+.+ +...++.--+..++..++--++.+       ++-....++|.+++++|+.+..+.-.+|
T Consensus        81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~K  158 (344)
T PF06379_consen   81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMK  158 (344)
T ss_pred             HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhh
Confidence            555555555566678866 233444444555555555444432       2333477899999999999877664433

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=92.15  E-value=0.22  Score=42.67  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHH
Q 018987          152 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL  231 (348)
Q Consensus       152 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (348)
                      .+++++++=++.|+..-....|.    +-+|.+...-+.+-+.++.+....+..          ...+...+..-..+|.
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~----GG~p~qQ~lGtT~GALifaiiv~~~~~----------p~~T~~~~iv~~isG~   67 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKF----GGKPYQQTLGTTLGALIFAIIVFLFVS----------PELTLTIFIVGFISGA   67 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeec----CCChhHhhhhccHHHHHHHHHHheeec----------CccchhhHHHHHHhhh
Confidence            35678888889998877766555    334554444333333333222222211          1123334556666777


Q ss_pred             HHHHHHHHHHhhhcccCcchhhhhhh-hHHHHHHHHHHHhcCCCCchhhh----hhHHHHHHHHHHHhh
Q 018987          232 ISVSVNFSTFLVIGKTSPVTYQVLGH-LKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMVLYSY  295 (348)
Q Consensus       232 ~~~~~~~~~~~~i~~~~a~~~~~~~~-~~~v~~~v~s~~~~~e~~t~~~~----~G~~li~~g~~l~~~  295 (348)
                      +-...+...+++++..+...+..++. .+-+-+.+++.++|||..+..++    +..+++++|+.+..+
T Consensus        68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~  136 (288)
T COG4975          68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSK  136 (288)
T ss_pred             HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeee
Confidence            77777778899999988888776665 45566789999999998887654    345566666665443

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=89.57  E-value=0.43  Score=42.20  Aligned_cols=135  Identities=13%  Similarity=0.058  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhc-cc----cccccc--ccccCchhHHHHHHHH
Q 018987          158 LLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDG-LL----TNKNVF--AFKYTPYVLFFIVLSC  230 (348)
Q Consensus       158 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~----~~~~~~--~~~~~~~~~~~~~~~~  230 (348)
                      +++.+||+.+-..+|-..++.+.+  +..+|-...+.++...+.-+..| ..    ..+..+  -.+.++..+.....+|
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR~~--qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG   79 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGRLP--QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG   79 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCCcc--ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence            456788888888777776533222  23444444444333222222211 11    111111  1233444556677777


Q ss_pred             HHHHHHHHHHHhhhcccCcchhhhh-hhhHHHHHHHHHHHhcCCCCc--hhhhhhHHHHHHHHHHHhh
Q 018987          231 LISVSVNFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFS--WRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       231 ~~~~~~~~~~~~~i~~~~a~~~~~~-~~~~~v~~~v~s~~~~~e~~t--~~~~~G~~li~~g~~l~~~  295 (348)
                      ++--+.+.....++...+-..+-.+ ..+..++++++-++ .+.+..  ..-+.|.+++++++++-..
T Consensus        80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~  146 (336)
T PF07168_consen   80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA  146 (336)
T ss_pred             HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence            7777777777666555542221111 11223334444432 344443  3556688888888776433

Transport is dependent on glucose and a proton gradient [].

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=89.13  E-value=6.2  Score=33.52  Aligned_cols=123  Identities=15%  Similarity=0.068  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-cccccCC------CC-cchhHHHHHHHHHHHhhh
Q 018987           18 SVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KLFEHKP------FD-PRAVMGFGVLNGISIGLL   89 (348)
Q Consensus        18 ~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~~~~~~------~~-~~~~~~~~~~~~~~~~~~   89 (348)
                      -+..+....+.+|....--.|. -..-.++.=+++..++..+... ...++.+      .+ ...+++-|++.....++.
T Consensus       163 NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~s  241 (309)
T COG5070         163 NCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCS  241 (309)
T ss_pred             hhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhcc
Confidence            3444555555556554432333 3444557777777666665432 2222221      11 224555677888888888


Q ss_pred             hhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhe
Q 018987           90 NLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGI  141 (348)
Q Consensus        90 ~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l  141 (348)
                      -|..+-++...+.++..+.-...++.+.++++++.+...+.++++++...++
T Consensus       242 aWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~i  293 (309)
T COG5070         242 AWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI  293 (309)
T ss_pred             ceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888776655444

>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)

Probab=88.31  E-value=0.14  Score=44.41  Aligned_cols=92  Identities=12%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             cchhHHHHHHhhHHHHHH-HHHHHhhcccc-chhhHHHHHHHhhhhheeecc--ccccchhHHHHHHHHHHHHHHHHHHH
Q 018987           96 NSVGFYQMTKLAIIPCTI-LLETLFFRKKF-SRNIQLSLVILLVGVGIATVT--DLQLNVLGSVLSLLAVLTTCVAQIMT  171 (348)
Q Consensus        96 ~~~~~~~~l~~~~pi~~~-i~~~l~l~e~~-s~~~~~~~~l~~~G~~l~~~~--~~~~~~~G~~~~l~s~~~~a~~~v~~  171 (348)
                      .+-+-.+++.++..+.++ ++-..++|+|+ -+.-.+|++++++-+.++..-  ..+.-++|+++.+++.+..-.-..|+
T Consensus        47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym  126 (381)
T PF05297_consen   47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYM  126 (381)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445566666655444 34445566664 788888888888777775442  23445678766655544433333333


Q ss_pred             HHHhhhcCCCHHHHHHh
Q 018987          172 NTIQKKFKVSSTQLLYQ  188 (348)
Q Consensus       172 ~~~~~~~~~~~~~~~~~  188 (348)
                      . +.++++.+-|+++.+
T Consensus       127 ~-lLr~~GAs~WtiLaF  142 (381)
T PF05297_consen  127 W-LLRELGASFWTILAF  142 (381)
T ss_dssp             -----------------
T ss_pred             H-HHHHhhhHHHHHHHH
Confidence            3 556678888877654

LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.76  E-value=20  Score=32.21  Aligned_cols=136  Identities=11%  Similarity=0.137  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH-HHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHH
Q 018987          153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQL-LYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL  231 (348)
Q Consensus       153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (348)
                      ....++..+++..+..+..|.....++.+..-. ..++...+.+.+...-.. . ..+.+ .++  +.  ...-..-..+
T Consensus        13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~-lv~~~-~l~--~~--~~kk~~P~~~   85 (314)
T KOG1444|consen   13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-G-LVNFR-PLD--LR--TAKKWFPVSL   85 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-c-eeecC-CcC--hH--HHHHHccHHH
Confidence            456666667777778888888777677665533 345555555554433221 1 11100 111  10  0001111112


Q ss_pred             HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018987          232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY  295 (348)
Q Consensus       232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~  295 (348)
                      +-++..+.....+++.+-....++....++...+...++++.+++...+.....+++|...+..
T Consensus        86 lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~  149 (314)
T KOG1444|consen   86 LFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF  149 (314)
T ss_pred             HHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence            2222233446678999999999999999999999999999999999999999999999877543

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=86.76  E-value=0.39  Score=39.65  Aligned_cols=62  Identities=23%  Similarity=0.376  Sum_probs=55.9

Q ss_pred             HHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          235 SVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       235 ~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      +.+|.+..++++.+|+.++.+...+..+..+.++++++|++....++..++.+.|+++..+.
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~  126 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA  126 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence            34788888999999999999999999999999999999999999999999999998876643

>PRK02237 hypothetical protein; Provisional

Probab=85.85  E-value=6.3  Score=29.28  Aligned_cols=47  Identities=19%  Similarity=0.268  Sum_probs=40.6

Q ss_pred             chhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          250 VTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       250 ~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      -..+..+-+-.+.++++.+.+-+++++...++|..++++|+.+..+.
T Consensus        60 RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~  106 (109)
T PRK02237         60 RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA  106 (109)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence            44567777888899999999999999999999999999999877554

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.06  E-value=0.24  Score=44.16  Aligned_cols=121  Identities=15%  Similarity=0.238  Sum_probs=81.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHH
Q 018987          148 QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIV  227 (348)
Q Consensus       148 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (348)
                      +.+..|.++++.+++..+....+.||..++.+.  ..                .  ..    ......+...+ .||.-.
T Consensus        17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~--~~----------------~--ra----~~gg~~yl~~~-~Ww~G~   71 (335)
T KOG2922|consen   17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA--SG----------------L--RA----GEGGYGYLKEP-LWWAGM   71 (335)
T ss_pred             cCceeeeeehhhccEEEeeehhhhHHHHHHHhh--hc----------------c--cc----cCCCcchhhhH-HHHHHH
Confidence            445779999999999999999988887764211  00                0  00    11111111121 233333


Q ss_pred             HHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          228 LSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       228 ~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      +.-..+   ....+.+....++.-.+.++.+..+...+++..+++|+++....+|++++++|.......
T Consensus        72 ltm~vG---ei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   72 LTMIVG---EIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHH---hHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            333333   333344566778888899999999999999999999999999999999999997765543

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=83.71  E-value=5.8  Score=29.38  Aligned_cols=48  Identities=15%  Similarity=0.277  Sum_probs=41.2

Q ss_pred             chhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018987          250 VTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC  297 (348)
Q Consensus       250 ~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~  297 (348)
                      -..+..+-+-.+.+++.++.+-+++|+...++|..++++|+.+..+..
T Consensus        58 RvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   58 RVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             hHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            445677778888999999999999999999999999999998876543

; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 41/268 (15%), Positives = 73/268 (27%), Gaps = 75/268 (27%)

Query: 68  KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQM-----TKLAIIPCTILLETLFFRK 122
           + F    V        +   LL L    N V    +     T +A+  C     +   + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVC----LSYKVQC 178

Query: 123 KFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSS 182
           K    I        + +      +          ++L +L   + QI  N   +    S+
Sbjct: 179 KMDFKI------FWLNLKNCNSPE----------TVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 183 TQLLYQSCPYQALTLFIIGPFLDGLLT-----NKNVF-AFKYTPYVLFFIVLSCLISVSV 236
            +L   S   +   L    P+ + LL      N   + AF           LSC I    
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----------LSCKI---- 268

Query: 237 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296
                L+  +   VT  +     T + L           +   +  +L+  +        
Sbjct: 269 -----LLTTRFKQVTDFLSAATTTHISL----DHHSMTLTPDEVKSLLLKYLDC------ 313

Query: 297 CSLESQQKASETSSQLP-QVKEGETDPL 323
                          LP +V     +P 
Sbjct: 314 -----------RPQDLPREVLTT--NPR 328

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.83
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.5
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.39
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.28

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.83  E-value=5.3e-09  Score=81.10  Aligned_cols=65  Identities=6%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhhhcccCcchhhhh-hhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          232 ISVSVNFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       232 ~~~~~~~~~~~~i~~~~a~~~~~~-~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      +..+..+....++|+.++..+..+ ..+.|++++++++++|+|++|+.+++|++++++|+++.+..
T Consensus        39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            344445667888999999988887 89999999999999999999999999999999999998753

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.50  E-value=8.8e-07  Score=66.14  Aligned_cols=71  Identities=20%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHhhhhhhhcccchhHHHHH-HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc
Q 018987           76 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD  146 (348)
Q Consensus        76 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~  146 (348)
                      +...+++.++..+...++++.|.+.+..+ ....|+++++++++++||+++..++.++.+++.|+.+....+
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            33345788889999999999999998887 899999999999999999999999999999999999876543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.39  E-value=5.6e-07  Score=69.67  Aligned_cols=70  Identities=20%  Similarity=0.196  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhhhhhhhcccchhHHHHH-HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc
Q 018987           76 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT  145 (348)
Q Consensus        76 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~  145 (348)
                      +...++++++..+.+.+++++|++.+..+ .+..|++++++++++++|+++..+++|++++++|+++....
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            33445888899999999999999998887 89999999999999999999999999999999999997653

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.28  E-value=1.6e-05  Score=59.29  Aligned_cols=64  Identities=6%  Similarity=0.149  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhhhcccCcchhhhh-hhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018987          233 SVSVNFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC  296 (348)
Q Consensus       233 ~~~~~~~~~~~i~~~~a~~~~~~-~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~  296 (348)
                      .....+....++|+.+...+..+ ..+.|+.+.+.++++|||++|+.+++|+.+++.|++..+..
T Consensus        40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            33345566778999998888777 89999999999999999999999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00